Citrus Sinensis ID: 046467

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180---
Protein Sequence
MASASSVSRLVVIIILINVGAISDATISVTTSAAGLLSSPIQLEREALLATGWWVNNWATTGNYTSDHCKWTGISCNSAGSVIGVSLLWYENDNIIGELGRFKFSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIFYKIVLMLSAGVCFYNAEEVCAVRT
Secondary Structure (PSIPRED)
cccccHHHHHHHHHHHHHHHHHHHHHccccccHHHHHcccccHHHHHHHHcccccccccccccccccccccccEEEcccccEEEEEEccccccccEEEEccccccccccccEEEccccccccccccccccccccccEEEcccccccccccHHHHHcHHHHHHHHccccccEEcccHHHHcccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHccccccccccccccccccccEEEEEEcccccEEEEEEcccccccccEcccccccccccccEEEEccccccccccccHHHHcccccEEEEccccccccccccHHHHHHHHHHHHHHccccccccccHHEEEEcc
Coil and Loop (DISEMBL)
MASASSVSRLVVIIILINVGAISDATISVTTSaagllsspIQLEREALLATGwwvnnwattgnytsdhckwtgiscnsagsVIGVSLLWYENDNIIGElgrfkfscfpnlrsfkirsnyllsgsipseiTVLSTIRTLEltsnnltgklpnftVTYYIFYKIVLMLSAGvcfynaeevcavrt
Flexible Loop (DISEMBL)
MASASSVSRLVVIIILINVGAISDATISVTTSAAGLLSSPIQLEREALLATGWWVNNWATTGNYTSDHCKWTGISCNSAGSVIGVSLLWYENDNIIGELGRFKFSCFPNLRSFKIRSnyllsgsipSEITVLSTIRTLEltsnnltgklpnFTVTYYIFYKIVLMLSAGVCFYNAEEVCAVRT
Low Complexity Region (SEG)
MasassvsrlvviiilinvgaisDATISVTTSAAGLLSSPIQLEREALLATGWWVNNWATTGNYTSDHCKWTGISCNSAGSVIGVSLLWYENDNIIGELGRFKFSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIFYKIVLMLSAGVCFYNAEEVCAVRT
Disordered region (IsUnstruct)
********RLVVIIILINVGAISDATISVTTSAAGLLSSPIQLEREALLATGWWVNNWATTGNYTSDHCKWTGISCNSAGSVIGVSLLWYENDNIIGELGRFKFSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIFYKIVLMLSAGVCFYNAEEVCAV**
Disordered Region (DISOPRED)
******V*RLVVIIILINVGAISDATISVTTSAAGLLSSPI*****ALLATGWWVNNWATTGNYTSDHCKWTGISCNSAGSVIGVSLLWYENDNIIGELGRFKFSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIFYKIVLMLSAGVCFYNAEEVCAVR*
Disordered Region (DISEMBL)
********RLVVIIILINVGAISDATISVTTSAAGLLSSPIQLEREALLATGWWVNNWATTGNYTSDHCKWTGISCNSAGSVIGVSLLWYENDNIIGELGRFKFSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIFYKIVLMLSAGVCFYNAEEVCAVRT
Disordered Region (DISPRO)
***ASSVSRLVVIIILINVGAISDATISVTTSAAGLLSSPIQLEREALLATGWWVNNWATTGNYTSDHCKWTGISCNSAGSVIGVSLLWYENDNIIGELGRFKFSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIFYKIVLMLSAGVCFYNAEEVCAVRT
Transmembrane Helix (TMHMM)
iiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MASASSVSRLVVIIILINVGAISDATISVTTSAAGLLSSPIQLEREALLATGWWVNNWATTGNYTSDHCKWTGISCNSAGSVIGVSLLWYENDNIIGELGRFKFSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIFYKIVLMLSAGVCFYNAEEVCAVRT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	183	2.2.26 [Sep-21-2011]
Q9LVM0	654	Probable inactive recepto	yes	no	0.606	0.169	0.323	2e-07
Q94F62	615	BRASSINOSTEROID INSENSITI	no	no	0.426	0.126	0.349	4e-06
Q8RY65	635	Protein NSP-INTERACTING K	no	no	0.491	0.141	0.37	4e-06
Q9C9Y8	640	Probable inactive recepto	no	no	0.628	0.179	0.343	1e-05
Q0WVM4	634	Probable LRR receptor-lik	no	no	0.584	0.168	0.327	2e-05
Q9SUQ3	638	Probable inactive recepto	no	no	0.491	0.141	0.376	3e-05
Q9LP24	1120	Probable leucine-rich rep	no	no	0.530	0.086	0.345	3e-05
Q8VYT3	648	Probable LRR receptor-lik	no	no	0.584	0.165	0.303	3e-05
Q9ZVR7	1008	Phytosulfokine receptor 1	no	no	0.475	0.086	0.343	5e-05
Q8LPS5	601	Somatic embryogenesis rec	no	no	0.535	0.163	0.307	5e-05

>sp|Q9LVM0|Y5830_ARATH Probable inactive receptor kinase At5g58300 OS=Arabidopsis thaliana GN=At5g58300 PE=1 SV=1

 Score = 55.8 bits (133), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 44/136 (32%), Positives = 69/136 (50%), Gaps = 25/136 (18%)

Query: 29  VTTSAAGLLSSPIQLEREALLATGWWVN-----NWATTGNYTSDHCK-WTGISCNSAGSV 82
           VTT+      + +  +R+ALLA    V      NW    N T+  CK W G++C S G+ 
Sbjct: 33  VTTTFCSYAIADLNSDRQALLAFAASVPHLRRLNW----NSTNHICKSWVGVTCTSDGTS 88

Query: 83  I------GVSLLWYENDNIIGELGRFKFSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIR 136
           +      G+ LL     N +G+L         +LR   +RSN LLSG++P +I  L ++ 
Sbjct: 89  VHALRLPGIGLLGPIPPNTLGKL--------ESLRILSLRSN-LLSGNLPPDIHSLPSLD 139

Query: 137 TLELTSNNLTGKLPNF 152
            + L  NN +G++P+F
Sbjct: 140 YIYLQHNNFSGEVPSF 155

Arabidopsis thaliana (taxid: 3702)

>sp|Q94F62|BAK1_ARATH BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 OS=Arabidopsis thaliana GN=BAK1 PE=1 SV=2

 Score = 51.2 bits (121), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 29/83 (34%), Positives = 49/83 (59%), Gaps = 5/83 (6%)

Query: 69  CKWTGISCNSAGSVIGVSLLWYENDNIIGELGRFKFSCFPNLRSFKIRSNYLLSGSIPSE 128
           C W  ++CNS  SV  V L    N N+ G+L   +    PNL+  ++ SN + +G+IP +
Sbjct: 57  CTWFHVTCNSDNSVTRVDL---GNANLSGQL-VMQLGQLPNLQYLELYSNNI-TGTIPEQ 111

Query: 129 ITVLSTIRTLELTSNNLTGKLPN 151
           +  L+ + +L+L  NNL+G +P+
Sbjct: 112 LGNLTELVSLDLYLNNLSGPIPS 134

Dual specificity kinase acting on both serine/threonine-and tyrosine-containing substrates. Controls the expression of genes associated with innate immunity in the absence of pathogens or elicitors. Involved in brassinosteroid (BR) signal transduction. Phosphorylates BRI1. May be involved in changing the equilibrium between plasma membrane-located BRI1 homodimers and endocytosed BRI1-BAK1 heterodimers. Interaction with MSBP1 stimulates the endocytosis of BAK1 and suppresses brassinosteroid signaling. Acts in pathogen-associated molecular pattern (PAMP)-triggered immunity (PTI) via its interaction with FLS2 and the phosphorylation of BIK1. Involved in programmed cell death (PCD) control. Positively regulates the BR-dependent plant growth pathway and negatively regulates the BR-independent cell-death pathway.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q8RY65|NIK2_ARATH Protein NSP-INTERACTING KINASE 2 OS=Arabidopsis thaliana GN=NIK2 PE=1 SV=1

 Score = 50.8 bits (120), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 37/100 (37%), Positives = 57/100 (57%), Gaps = 10/100 (10%)

Query: 57  NWATTGNYTSDHCKWTGISCNSAGSVIGVSLLWYENDNIIGELGRFKFSCFPNLRSFKIR 116
           NW  T     D C W  I+C S G VI    L   + N+ G L         NL++  ++
Sbjct: 62  NWDDTA---VDPCSWNMITC-SDGFVI---RLEAPSQNLSGTLSS-SIGNLTNLQTVLLQ 113

Query: 117 SNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTY 156
           +NY+ +G+IP EI  L  ++TL+L++NN TG++P FT++Y
Sbjct: 114 NNYI-TGNIPHEIGKLMKLKTLDLSTNNFTGQIP-FTLSY 151

Involved in defense response to geminivirus infection (By similarity). Phosphorylates RPL10A in vitro.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9C9Y8|Y3868_ARATH Probable inactive receptor kinase At3g08680 OS=Arabidopsis thaliana GN=At3g08680 PE=1 SV=1

 Score = 49.7 bits (117), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/128 (34%), Positives = 61/128 (47%), Gaps = 13/128 (10%)

Query: 29  VTTSAAGLLSSPIQLEREALLATGWWVN-----NWATTGNYTSDHC-KWTGISCNSAGSV 82
           VTT  +  LS+ I+ +++ALL     V      NW    N T   C  WTGI+C+   + 
Sbjct: 13  VTTFVSRCLSADIESDKQALLEFASLVPHSRKLNW----NSTIPICASWTGITCSKNNAR 68

Query: 83  IGVSLLWYENDNIIGELGRFKFSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTS 142
             V+ L      + G L    F     LR   +RSN+L  G+IPS I  L  IR+L    
Sbjct: 69  --VTALRLPGSGLYGPLPEKTFEKLDALRIISLRSNHL-QGNIPSVILSLPFIRSLYFHE 125

Query: 143 NNLTGKLP 150
           NN +G +P
Sbjct: 126 NNFSGTIP 133

Arabidopsis thaliana (taxid: 3702)

>sp|Q0WVM4|Y2239_ARATH Probable LRR receptor-like serine/threonine-protein kinase At2g23950 OS=Arabidopsis thaliana GN=At2g23950 PE=2 SV=1

 Score = 48.9 bits (115), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/122 (32%), Positives = 61/122 (50%), Gaps = 15/122 (12%)

Query: 36  LLSSPIQLEREALLATGWWVN-------NWATTGNYTSDHCKWTGISCNSAGSVIGVSLL 88
           L S P   E EAL+     ++       NW     ++ D C WT ISC+S   VIG   L
Sbjct: 26  LSSEPRNPEVEALINIKNELHDPHGVFKNW---DEFSVDPCSWTMISCSSDNLVIG---L 79

Query: 89  WYENDNIIGELGRFKFSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGK 148
              + ++ G L         NLR   +++N + SG IP EI  L  ++TL+L++N  +G+
Sbjct: 80  GAPSQSLSGTLSG-SIGNLTNLRQVSLQNNNI-SGKIPPEICSLPKLQTLDLSNNRFSGE 137

Query: 149 LP 150
           +P
Sbjct: 138 IP 139

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9SUQ3|Y4374_ARATH Probable inactive receptor kinase At4g23740 OS=Arabidopsis thaliana GN=At4g23740 PE=1 SV=1

 Score = 48.5 bits (114), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 38/101 (37%), Positives = 51/101 (50%), Gaps = 11/101 (10%)

Query: 57  NWATTGNYTSDHCK-WTGISCNSAGS-VIGVSLLWYENDNIIGELGRFKFSCFPNLRSFK 114
           NW    N TS  C  WTG++CN  GS +I V L       + G++     S    LR   
Sbjct: 47  NW----NETSQVCNIWTGVTCNQDGSRIIAVRLPGV---GLNGQIPPNTISRLSALRVLS 99

Query: 115 IRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLP-NFTV 154
           +RSN L+SG  P +   L  +  L L  NNL+G LP +F+V
Sbjct: 100 LRSN-LISGEFPKDFVELKDLAFLYLQDNNLSGPLPLDFSV 139

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LP24|Y1571_ARATH Probable leucine-rich repeat receptor-like protein kinase At1g35710 OS=Arabidopsis thaliana GN=At1g35710 PE=2 SV=1

 Score = 48.1 bits (113), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 38/110 (34%), Positives = 56/110 (50%), Gaps = 13/110 (11%)

Query: 54  WVNNWATTGNYTSDHCKWTGISCNSAGSVIGVSLLWYENDNIIGELGRFKFSCFPNLRSF 113
           WV++  T  +++     W G+SCNS GS+  ++L    N  I G    F F    NL   
Sbjct: 53  WVHDANTNTSFSC--TSWYGVSCNSRGSIEELNL---TNTGIEGTFQDFPFISLSNLAYV 107

Query: 114 KIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGK-------LPNFTVTY 156
            +  N LLSG+IP +   LS +   +L++N+LTG+       L N TV Y
Sbjct: 108 DLSMN-LLSGTIPPQFGNLSKLIYFDLSTNHLTGEISPSLGNLKNLTVLY 156

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q8VYT3|Y4052_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g30520 OS=Arabidopsis thaliana GN=At4g30520 PE=2 SV=1

 Score = 48.1 bits (113), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 37/122 (30%), Positives = 59/122 (48%), Gaps = 15/122 (12%)

Query: 36  LLSSPIQLEREALLA-------TGWWVNNWATTGNYTSDHCKWTGISCNSAGSVIGVSLL 88
           L S P   E EAL++           +NNW     ++ D C W  I+C+    VIG   L
Sbjct: 29  LSSEPRNPEVEALISIRNNLHDPHGALNNW---DEFSVDPCSWAMITCSPDNLVIG---L 82

Query: 89  WYENDNIIGELGRFKFSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGK 148
              + ++ G L         NLR   +++N + SG IP E+  L  ++TL+L++N  +G 
Sbjct: 83  GAPSQSLSGGLSE-SIGNLTNLRQVSLQNNNI-SGKIPPELGFLPKLQTLDLSNNRFSGD 140

Query: 149 LP 150
           +P
Sbjct: 141 IP 142

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9ZVR7|PSKR1_ARATH Phytosulfokine receptor 1 OS=Arabidopsis thaliana GN=PSKR1 PE=2 SV=4

 Score = 47.4 bits (111), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 34/99 (34%), Positives = 53/99 (53%), Gaps = 12/99 (12%)

Query: 54  WVNNWATTGNYTSDHCKWTGISCNS--AGSVIGVSLLWYENDNIIGELGRFKFSCFPNLR 111
           W+N+ ++T     D C WTGI+CNS   G VI + L    N  + G+L          +R
Sbjct: 53  WINSSSST-----DCCNWTGITCNSNNTGRVIRLEL---GNKKLSGKLSE-SLGKLDEIR 103

Query: 112 SFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLP 150
              +  N++   SIP  I  L  ++TL+L+SN+L+G +P
Sbjct: 104 VLNLSRNFI-KDSIPLSIFNLKNLQTLDLSSNDLSGGIP 141

Phytosulfokine receptor with a serine/threonine-protein kinase activity. Regulates, in response to phytosulfokine binding, a signaling cascade involved in plant cell differentiation, organogenesis, somatic embryogenesis, cellular proliferation and plant growth. Not involved in PSY perception.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q8LPS5|SERK5_ARATH Somatic embryogenesis receptor kinase 5 OS=Arabidopsis thaliana GN=SERK5 PE=1 SV=2

 Score = 47.4 bits (111), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 32/104 (30%), Positives = 58/104 (55%), Gaps = 6/104 (5%)

Query: 49  LATGWWVNNWATTGNYTS-DHCKWTGISCNSAGSVIGVSLLWYENDNIIGELGRFKFSCF 107
           L++G   NN   + N T    C W  ++CN+  SV  + L    + N+ GEL   + +  
Sbjct: 38  LSSGDHTNNILQSWNATHVTPCSWFHVTCNTENSVTRLDL---GSANLSGELVP-QLAQL 93

Query: 108 PNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPN 151
           PNL+  ++ +N + +G IP E+  L  + +L+L +NN++G +P+
Sbjct: 94  PNLQYLELFNNNI-TGEIPEELGDLMELVSLDLFANNISGPIPS 136

Serine/threonine-kinase of unknown function.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	183
224065665	847	predicted protein [Populus trichocarpa]	0.551	0.119	0.448	8e-16
224110038	964	predicted protein [Populus trichocarpa]	0.551	0.104	0.448	1e-15
359488981	757	PREDICTED: probable LRR receptor-like se	0.737	0.178	0.381	6e-15
224065673	964	predicted protein [Populus trichocarpa]	0.765	0.145	0.366	7e-15
296082880	1188	unnamed protein product [Vitis vinifera]	0.524	0.080	0.448	1e-14
225452749	783	PREDICTED: probable LRR receptor-like se	0.524	0.122	0.448	1e-14
147791263	483	hypothetical protein VITISV_004487 [Viti	0.688	0.260	0.393	1e-14
224110020	1048	predicted protein [Populus trichocarpa]	0.551	0.096	0.439	1e-14
225452751	878	PREDICTED: probable leucine-rich repeat	0.726	0.151	0.381	2e-14
224110024	827	predicted protein [Populus trichocarpa]	0.551	0.122	0.435	1e-13

>gi|224065665|ref|XP_002301910.1| predicted protein [Populus trichocarpa] gi|222843636|gb|EEE81183.1| predicted protein [Populus trichocarpa]

 Score = 89.0 bits (219), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 48/107 (44%), Positives = 66/107 (61%), Gaps = 6/107 (5%)

Query: 44  EREALLATGWWVNNWATTGNYTSDHCKWTGISCNSAGSVIGVSLLWYENDNIIGELGRFK 103
           E +ALL +GWW    +   N TS  CKWTGI C+ AGS+  +S    E   +  + G+  
Sbjct: 43  EGKALLESGWW----SDYRNLTSHRCKWTGIVCDRAGSITDISP-PPEFLKVGNKFGKMN 97

Query: 104 FSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLP 150
           FSCF NL    + +N+ LSGSIP +I++L  +R L L+SNNL G+LP
Sbjct: 98  FSCFSNLARLHL-ANHELSGSIPPQISILPQLRYLNLSSNNLAGELP 143

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224110038|ref|XP_002333164.1| predicted protein [Populus trichocarpa] gi|222835017|gb|EEE73466.1| predicted protein [Populus trichocarpa]

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 48/107 (44%), Positives = 66/107 (61%), Gaps = 6/107 (5%)

Query: 44  EREALLATGWWVNNWATTGNYTSDHCKWTGISCNSAGSVIGVSLLWYENDNIIGELGRFK 103
           E +ALL +GWW    +   N TS  CKWTGI C+ AGS+  +S    E   +  + G+  
Sbjct: 43  EGKALLESGWW----SDYSNLTSHRCKWTGIVCDGAGSITKISP-PPEFLKVGNKFGKMN 97

Query: 104 FSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLP 150
           FSCF NL    + +N+ LSGSIP +I++L  +R L L+SNNL G+LP
Sbjct: 98  FSCFSNLVRLHL-ANHELSGSIPPQISILPQLRYLNLSSNNLAGELP 143

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359488981|ref|XP_002275364.2| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850-like [Vitis vinifera]

 Score = 85.9 bits (211), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 58/152 (38%), Positives = 82/152 (53%), Gaps = 17/152 (11%)

Query: 13  IIILINVGAISDATISVTTSAAGLLSSPIQ--LEREALLATGWWVNNWATTGNYTSDHCK 70
           +II   V  ++   + +  S A  +SSP     E EAL +TGWW        N TS HC 
Sbjct: 5   VIISTAVVIVTSTMMMMLFSLAKAISSPSSSTDEAEALRSTGWW--------NSTSAHCH 56

Query: 71  WTGISCNSAGSVIGVSLLWYENDNIIGELGRFKFSCFPNLRSFKIRSNYLLSGSIPSEIT 130
           W G+ CN+AG V G++L  Y +   +GEL + +FS FP+L    + S   L+GSIP +I 
Sbjct: 57  WDGVYCNNAGRVTGIAL--YGSGKELGELSKLEFSSFPSLVELNL-SACGLNGSIPHQIG 113

Query: 131 VLSTIRTLELTSNNLTGKLP----NFTVTYYI 158
            L+ +  L L  NNLTG++P    N T   Y+
Sbjct: 114 TLTQLTVLSLHDNNLTGEIPLSLANLTQLLYL 145

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224065673|ref|XP_002301914.1| predicted protein [Populus trichocarpa] gi|222843640|gb|EEE81187.1| predicted protein [Populus trichocarpa]

 Score = 85.9 bits (211), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 56/153 (36%), Positives = 84/153 (54%), Gaps = 13/153 (8%)

Query: 1   MASASSVSRLVVII---ILINVGAISDATISVTTSAAGLLSSPIQLEREALLATGWWVNN 57
           MAS     +L+ I+   I ++   +S   +      + LL+S    E +AL+ +GWW   
Sbjct: 1   MASIDYEPKLLAILSTSIFLSSIFVSSTGLVAALDDSALLAS----EGKALVESGWW--- 53

Query: 58  WATTGNYTSDHCKWTGISCNSAGSVIGVSLLWYENDNIIGELGRFKFSCFPNLRSFKIRS 117
            +   N TS  C WTGI C+ AGS+  +S    E   +  + G+  FSCF NL    + +
Sbjct: 54  -SDYSNLTSHRCNWTGIVCDGAGSITKISP-PPEFLKVGNKFGKMNFSCFSNLVRLHL-A 110

Query: 118 NYLLSGSIPSEITVLSTIRTLELTSNNLTGKLP 150
           N+ LSGSIP +I++L  +R L L+SNNL G+LP
Sbjct: 111 NHELSGSIPPQISILPQLRYLNLSSNNLAGELP 143

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296082880|emb|CBI22181.3| unnamed protein product [Vitis vinifera]

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 48/107 (44%), Positives = 64/107 (59%), Gaps = 11/107 (10%)

Query: 44  EREALLATGWWVNNWATTGNYTSDHCKWTGISCNSAGSVIGVSLLWYENDNIIGELGRFK 103
           E EAL +TGWW        N TS HC W G+ CN+AG V G++L  Y +   +GEL +  
Sbjct: 78  EAEALRSTGWW--------NSTSAHCHWDGVFCNNAGRVTGIAL--YGSGKELGELSKLD 127

Query: 104 FSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLP 150
           FS FP+L    + S+  L+GSIP +I  L+ +  L L  NNLTG+LP
Sbjct: 128 FSSFPSLVELSL-SDCGLNGSIPHQIGTLTQLTYLSLGLNNLTGELP 173

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225452749|ref|XP_002277477.1| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850-like [Vitis vinifera]

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 48/107 (44%), Positives = 64/107 (59%), Gaps = 11/107 (10%)

Query: 44  EREALLATGWWVNNWATTGNYTSDHCKWTGISCNSAGSVIGVSLLWYENDNIIGELGRFK 103
           E EAL +TGWW        N TS HC W G+ CN+AG V G++L  Y +   +GEL +  
Sbjct: 40  EAEALRSTGWW--------NSTSAHCHWDGVFCNNAGRVTGIAL--YGSGKELGELSKLD 89

Query: 104 FSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLP 150
           FS FP+L    + S+  L+GSIP +I  L+ +  L L  NNLTG+LP
Sbjct: 90  FSSFPSLVELSL-SDCGLNGSIPHQIGTLTQLTYLSLGLNNLTGELP 135

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147791263|emb|CAN76838.1| hypothetical protein VITISV_004487 [Vitis vinifera]

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 59/150 (39%), Positives = 81/150 (54%), Gaps = 24/150 (16%)

Query: 22  ISDATISVTT-------SAAGLLSSPIQ--LEREALLATGWWVNNWATTGNYTSDHCKWT 72
           IS A + VT+       S A  +SSP     E EAL +TGWW        N TS HC W 
Sbjct: 7   ISTAVVIVTSTMMMMLFSLAKAISSPSSSTDEAEALRSTGWW--------NSTSAHCHWD 58

Query: 73  GISCNSAGSVIGVSLLWYENDNIIGELGRFKFSCFPNLRSFKIRSNYLLSGSIPSEITVL 132
           G+ CN+AG V G++L  Y +   +GEL + +FS FP+L    + +   L+GSIP +I  L
Sbjct: 59  GVYCNNAGRVTGIAL--YGSGKELGELSKLEFSSFPSLVELNLXA-CGLNGSIPHQIGTL 115

Query: 133 STIRTLELTSNNLTGKLP----NFTVTYYI 158
           + +  L L  NNLTG++P    N T   Y+
Sbjct: 116 TQLTVLSLHDNNLTGEIPLSLANLTQLLYL 145

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224110020|ref|XP_002333160.1| predicted protein [Populus trichocarpa] gi|222835013|gb|EEE73462.1| predicted protein [Populus trichocarpa]

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 47/107 (43%), Positives = 65/107 (60%), Gaps = 6/107 (5%)

Query: 44  EREALLATGWWVNNWATTGNYTSDHCKWTGISCNSAGSVIGVSLLWYENDNIIGELGRFK 103
           E +ALL +GWW    +   N TS  CKWTGI C+ AGS+  +S    E   +  + G+  
Sbjct: 43  EGKALLESGWW----SDYSNLTSHRCKWTGIVCDRAGSITEISP-PPEFLKVGNKFGKMN 97

Query: 104 FSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLP 150
           FSCF NL    + +N+ LSGSIP +I++L  +R L L+SN L G+LP
Sbjct: 98  FSCFSNLVRLHL-ANHELSGSIPHQISILPQLRYLNLSSNYLAGELP 143

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225452751|ref|XP_002277606.1| PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710-like [Vitis vinifera]

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 58/152 (38%), Positives = 86/152 (56%), Gaps = 19/152 (12%)

Query: 1   MASASSVSRLVVIIILINVGAISDATISVTTSAAGLLSSPIQ--LEREALLATGWWVNNW 58
           MAS+  +S  VV++ + ++  I      +  S A  LSSP     E EAL +TGWW    
Sbjct: 1   MASSIIISPAVVVVTITSIMMI------MLFSLANALSSPSSSTDEAEALRSTGWW---- 50

Query: 59  ATTGNYTSDHCKWTGISCNSAGSVIGVSLLWYENDNIIGELGRFKFSCFPNLRSFKIRSN 118
               N TS HC W G+ CN+AG V  ++  ++++   +GEL + +FS FP+L    + S+
Sbjct: 51  ----NSTSAHCNWDGVYCNNAGRVTQIA--FFDSGKKLGELSKLEFSSFPSLVELFL-SD 103

Query: 119 YLLSGSIPSEITVLSTIRTLELTSNNLTGKLP 150
             L+GSIP +I  L+ +  L L  NNLTG+LP
Sbjct: 104 CGLNGSIPHQIGTLTQLIILYLPLNNLTGELP 135

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224110024|ref|XP_002333161.1| predicted protein [Populus trichocarpa] gi|222835014|gb|EEE73463.1| predicted protein [Populus trichocarpa]

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 47/108 (43%), Positives = 64/108 (59%), Gaps = 7/108 (6%)

Query: 44  EREALLATGWWVNNWATTGNYTSDHCK-WTGISCNSAGSVIGVSLLWYENDNIIGELGRF 102
           E +ALL +GWW    +   N TS  CK W GI CN AGS+  +S    E   +  + G+ 
Sbjct: 43  EVKALLESGWW----SQYSNLTSHRCKYWPGIFCNRAGSITKISP-PPEFLKVGNKFGKM 97

Query: 103 KFSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLP 150
            FSCF NL    +  N+ L+GSIP +I++L  +R L L+SNNL G+LP
Sbjct: 98  NFSCFSNLVRLHL-PNHELNGSIPPQISILPQLRYLNLSSNNLAGELP 144

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	183
TAIR|locus:2049108	744	AT2G15300 [Arabidopsis thalian	0.617	0.151	0.279	4.1e-08
TAIR|locus:2051628	1008	PSKR1 "phytosulfokin receptor	0.475	0.086	0.343	4.2e-08
TAIR|locus:2077898	640	AT3G08680 [Arabidopsis thalian	0.650	0.185	0.338	5e-08
TAIR|locus:2161308	654	AT5G58300 [Arabidopsis thalian	0.661	0.185	0.309	5.2e-08
TAIR|locus:2182870	1192	EMS1 "EXCESS MICROSPOROCYTES1"	0.612	0.093	0.325	5.3e-08
TAIR|locus:2163665	895	MOL1 "MORE LATERAL GROWTH1" [A	0.513	0.105	0.306	7.8e-08
TAIR|locus:2058598	773	AT2G23300 [Arabidopsis thalian	0.453	0.107	0.337	1.1e-07
TAIR|locus:2061466	634	AT2G23950 [Arabidopsis thalian	0.469	0.135	0.340	1.3e-07
TAIR|locus:2011339	1120	AT1G35710 [Arabidopsis thalian	0.677	0.110	0.318	2.1e-07
TAIR|locus:2128414	638	AT4G23740 [Arabidopsis thalian	0.491	0.141	0.376	2.2e-07

TAIR|locus:2049108 AT2G15300 [Arabidopsis thaliana (taxid:3702)]

 Score = 124 (48.7 bits), Expect = 4.1e-08, Sum P(2) = 4.1e-08
 Identities = 36/129 (27%), Positives = 60/129 (46%)

Query:    28 SVTTSAAGLLSSPIQLEREALLATGWWVNNWATTGNYTSDH-CKWTGISCNSAG-----S 81
             ++ T    LLS    +  + LL     + NW    NY  +  C WTG++C   G      
Sbjct:    23 ALNTDGVALLSFKYSILNDPLLV----LRNW----NYDDETPCSWTGVTCTELGIPNTPD 74

Query:    82 VIGVSLLWYENDNIIGELGRFKFSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELT 141
             +  V+ L   N  ++G +    FS   +LR   +  N+   GS+P  ++  S +R L L 
Sbjct:    75 MFRVTSLVLPNKQLLGSVSPDLFSIL-HLRILDLSDNFF-HGSLPDSVSNASELRILSLG 132

Query:   142 SNNLTGKLP 150
             +N ++G+LP
Sbjct:   133 NNKVSGELP 141

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2051628 PSKR1 "phytosulfokin receptor 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 129 (50.5 bits), Expect = 4.2e-08, Sum P(2) = 4.2e-08
 Identities = 34/99 (34%), Positives = 53/99 (53%)

Query:    54 WVNNWATTGNYTSDHCKWTGISCNS--AGSVIGVSLLWYENDNIIGELGRFKFSCFPNLR 111
             W+N+ ++T     D C WTGI+CNS   G VI + L    N  + G+L          +R
Sbjct:    53 WINSSSST-----DCCNWTGITCNSNNTGRVIRLEL---GNKKLSGKLSE-SLGKLDEIR 103

Query:   112 SFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLP 150
                +  N++   SIP  I  L  ++TL+L+SN+L+G +P
Sbjct:   104 VLNLSRNFI-KDSIPLSIFNLKNLQTLDLSSNDLSGGIP 141

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS;IDA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0001653 "peptide receptor activity" evidence=IMP;IDA

GO:0009611 "response to wounding" evidence=IGI

GO:0004383 "guanylate cyclase activity" evidence=IDA

GO:0045087 "innate immune response" evidence=IMP

GO:0031347 "regulation of defense response" evidence=IGI

TAIR|locus:2077898 AT3G08680 [Arabidopsis thaliana (taxid:3702)]

 Score = 135 (52.6 bits), Expect = 5.0e-08, P = 5.0e-08
 Identities = 42/124 (33%), Positives = 61/124 (49%)

Query:    29 VTTSAAGLLSSPIQLEREALLATGWWV-NNWATTGNYTSDHC-KWTGISCNSAGSVIGVS 86
             VTT  +  LS+ I+ +++ALL     V ++     N T   C  WTGI+C+   +   V+
Sbjct:    13 VTTFVSRCLSADIESDKQALLEFASLVPHSRKLNWNSTIPICASWTGITCSKNNA--RVT 70

Query:    87 LLWYENDNIIGELGRFKFSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLT 146
              L      + G L    F     LR   +RSN+L  G+IPS I  L  IR+L    NN +
Sbjct:    71 ALRLPGSGLYGPLPEKTFEKLDALRIISLRSNHL-QGNIPSVILSLPFIRSLYFHENNFS 129

Query:   147 GKLP 150
             G +P
Sbjct:   130 GTIP 133

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=ISS

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005576 "extracellular region" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009505 "plant-type cell wall" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0006084 "acetyl-CoA metabolic process" evidence=RCA

GO:0007020 "microtubule nucleation" evidence=RCA

GO:0007389 "pattern specification process" evidence=RCA

GO:0008361 "regulation of cell size" evidence=RCA

GO:0009664 "plant-type cell wall organization" evidence=RCA

GO:0009926 "auxin polar transport" evidence=RCA

GO:0010015 "root morphogenesis" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

GO:0016126 "sterol biosynthetic process" evidence=RCA

GO:0016132 "brassinosteroid biosynthetic process" evidence=RCA

GO:0040007 "growth" evidence=RCA

GO:0042545 "cell wall modification" evidence=RCA

TAIR|locus:2161308 AT5G58300 [Arabidopsis thaliana (taxid:3702)]

 Score = 135 (52.6 bits), Expect = 5.2e-08, P = 5.2e-08
 Identities = 39/126 (30%), Positives = 64/126 (50%)

Query:    29 VTTSAAGLLSSPIQLEREALLATGWWVNNWATTG-NYTSDHCK-WTGISCNSAGSVIGVS 86
             VTT+      + +  +R+ALLA    V +      N T+  CK W G++C S G+   V 
Sbjct:    33 VTTTFCSYAIADLNSDRQALLAFAASVPHLRRLNWNSTNHICKSWVGVTCTSDGT--SVH 90

Query:    87 LLWYENDNIIGELGRFKFSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLT 146
              L      ++G +         +LR   +RSN LLSG++P +I  L ++  + L  NN +
Sbjct:    91 ALRLPGIGLLGPIPPNTLGKLESLRILSLRSN-LLSGNLPPDIHSLPSLDYIYLQHNNFS 149

Query:   147 GKLPNF 152
             G++P+F
Sbjct:   150 GEVPSF 155

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=ISS

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0010075 "regulation of meristem growth" evidence=RCA

TAIR|locus:2182870 EMS1 "EXCESS MICROSPOROCYTES1" [Arabidopsis thaliana (taxid:3702)]

 Score = 138 (53.6 bits), Expect = 5.3e-08, P = 5.3e-08
 Identities = 41/126 (32%), Positives = 68/126 (53%)

Query:    25 ATISVTTSAAGLLSSPIQLEREALLATGWWVNNWATTGNYTSDHCKWTGISCNSAGSVIG 84
             A + +++    L+S    LE  +LL++ W V++ A+       HC W G++C   G V  
Sbjct:    19 AIVDLSSETTSLISFKRSLENPSLLSS-WNVSSSAS-------HCDWVGVTC-LLGRVNS 69

Query:    85 VSLLWYENDNIIGELGRFKFSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNN 144
             +SL    + ++ G++ + + S   NLR   +  N   SG IP EI  L  ++TL+L+ N+
Sbjct:    70 LSL---PSLSLRGQIPK-EISSLKNLRELCLAGNQF-SGKIPPEIWNLKHLQTLDLSGNS 124

Query:   145 LTGKLP 150
             LTG LP
Sbjct:   125 LTGLLP 130

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009556 "microsporogenesis" evidence=IMP

GO:0010234 "tapetal cell fate specification" evidence=IMP

GO:0016020 "membrane" evidence=IDA

GO:0019199 "transmembrane receptor protein kinase activity" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2163665 MOL1 "MORE LATERAL GROWTH1" [Arabidopsis thaliana (taxid:3702)]

 Score = 135 (52.6 bits), Expect = 7.8e-08, P = 7.8e-08
 Identities = 31/101 (30%), Positives = 54/101 (53%)

Query:    53 WWVNNWATTGNYTSDHCKWTGISCN-SAGSVIGVSLLWYENDNIIGELGRFKFSCFPNLR 111
             W++N    + N  +  C W+G+ CN ++ SV+ V L    + N+ G L   +F  F  L 
Sbjct:    49 WFINTPEVSDNLVAC-CSWSGVRCNQNSTSVVSVDL---SSKNLAGSLSGKEFLVFTELL 104

Query:   112 SFKIRSNYLLSGSIPSEITV-LSTIRTLELTSNNLTGKLPN 151
                I  N   SG  P+EI   ++ +R+L+++ NN +G+ P+
Sbjct:   105 ELNISDNSF-SGEFPAEIFFNMTNLRSLDISRNNFSGRFPD 144

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:2000604 "negative regulation of secondary growth" evidence=IMP

TAIR|locus:2058598 AT2G23300 [Arabidopsis thaliana (taxid:3702)]

 Score = 133 (51.9 bits), Expect = 1.1e-07, P = 1.1e-07
 Identities = 30/89 (33%), Positives = 50/89 (56%)

Query:    63 NYTSDH-CKWTGISCNSAGSVIGVSLLWYENDNIIGELGRFKFSCFPNLRSFKIRSNYLL 121
             NY  D+ C W G+ CN+   V+ +SL    N N++G +         NL+S  + SN  L
Sbjct:    57 NYDHDNPCSWRGVLCNNDSRVVTLSL---PNSNLVGSIPS-DLGFLQNLQSLNL-SNNSL 111

Query:   122 SGSIPSEITVLSTIRTLELTSNNLTGKLP 150
             +GS+P E      +R L+L++N ++G++P
Sbjct:   112 NGSLPVEFFAADKLRFLDLSNNLISGEIP 140

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005576 "extracellular region" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2061466 AT2G23950 [Arabidopsis thaliana (taxid:3702)]

 Score = 131 (51.2 bits), Expect = 1.3e-07, P = 1.3e-07
 Identities = 32/94 (34%), Positives = 51/94 (54%)

Query:    57 NWATTGNYTSDHCKWTGISCNSAGSVIGVSLLWYENDNIIGELGRFKFSCFPNLRSFKIR 116
             NW     ++ D C WT ISC+S   VIG+      + ++ G L         NLR   ++
Sbjct:    54 NW---DEFSVDPCSWTMISCSSDNLVIGLGA---PSQSLSGTLSG-SIGNLTNLRQVSLQ 106

Query:   117 SNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLP 150
             +N + SG IP EI  L  ++TL+L++N  +G++P
Sbjct:   107 NNNI-SGKIPPEICSLPKLQTLDLSNNRFSGEIP 139

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0010075 "regulation of meristem growth" evidence=RCA

TAIR|locus:2011339 AT1G35710 [Arabidopsis thaliana (taxid:3702)]

 Score = 132 (51.5 bits), Expect = 2.1e-07, P = 2.1e-07
 Identities = 44/138 (31%), Positives = 67/138 (48%)

Query:    28 SVTTSAAGLLSSPIQLEREALLATGWWVNNWATTGNY-TSDHC-KWTGISCNSAGSVIGV 85
             S++ SA  +  +   L+ ++       +++W    N  TS  C  W G+SCNS GS+  +
Sbjct:    24 SISASAT-IAEANALLKWKSTFTNSSKLSSWVHDANTNTSFSCTSWYGVSCNSRGSIEEL 82

Query:    86 SLLWYENDNIIGELGRFKFSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNL 145
             +L    N  I G    F F    NL    +  N LLSG+IP +   LS +   +L++N+L
Sbjct:    83 NLT---NTGIEGTFQDFPFISLSNLAYVDLSMN-LLSGTIPPQFGNLSKLIYFDLSTNHL 138

Query:   146 TGK-------LPNFTVTY 156
             TG+       L N TV Y
Sbjct:   139 TGEISPSLGNLKNLTVLY 156

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=ISS

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0000165 "MAPK cascade" evidence=RCA

GO:0009814 "defense response, incompatible interaction" evidence=RCA

TAIR|locus:2128414 AT4G23740 [Arabidopsis thaliana (taxid:3702)]

 Score = 129 (50.5 bits), Expect = 2.2e-07, P = 2.2e-07
 Identities = 38/101 (37%), Positives = 51/101 (50%)

Query:    57 NWATTGNYTSDHCK-WTGISCNSAGS-VIGVSLLWYENDNIIGELGRFKFSCFPNLRSFK 114
             NW    N TS  C  WTG++CN  GS +I V L       + G++     S    LR   
Sbjct:    47 NW----NETSQVCNIWTGVTCNQDGSRIIAVRL---PGVGLNGQIPPNTISRLSALRVLS 99

Query:   115 IRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLP-NFTV 154
             +RSN L+SG  P +   L  +  L L  NNL+G LP +F+V
Sbjct:   100 LRSN-LISGEFPKDFVELKDLAFLYLQDNNLSGPLPLDFSV 139

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=ISS

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0010075 "regulation of meristem growth" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	183
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-10
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	0.004

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 59.5 bits (144), Expect = 1e-10
 Identities = 33/99 (33%), Positives = 56/99 (56%), Gaps = 10/99 (10%)

Query: 54  WVNNWATTGNYTSDHCKWTGISCNSAGSVIGVSLLWYENDNIIGELGRFKFSCFPNLRSF 113
           +++NW    N ++D C W GI+CN++  V+ + L      NI G++    F   P +++ 
Sbjct: 47  YLSNW----NSSADVCLWQGITCNNSSRVVSIDL---SGKNISGKISSAIFR-LPYIQTI 98

Query: 114 KIRSNYLLSGSIPSEITVLS-TIRTLELTSNNLTGKLPN 151
            + +N  LSG IP +I   S ++R L L++NN TG +P 
Sbjct: 99  NLSNNQ-LSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR 136

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 37.1 bits (86), Expect = 0.004
 Identities = 19/43 (44%), Positives = 25/43 (58%), Gaps = 4/43 (9%)

Query: 121 LSGSIPSEITVLSTIRTLELTSNNLTGKLP----NFTVTYYIF 159
           LSG IP EI  L+++  L+L  NNLTG +P    N     Y+F
Sbjct: 224 LSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLF 266

Length = 968

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	183
PLN03150	623	hypothetical protein; Provisional	99.66
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.62
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.03
PLN03150	623	hypothetical protein; Provisional	99.01
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.92
KOG0472	565	consensus Leucine-rich repeat protein [Function un	98.46
KOG0617	264	consensus Ras suppressor protein (contains leucine	98.43
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.18
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.16
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.14
KOG0472	565	consensus Leucine-rich repeat protein [Function un	98.03
KOG0617	264	consensus Ras suppressor protein (contains leucine	97.84
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	97.84
PF08263	43	LRRNT_2: Leucine rich repeat N-terminal domain; In	97.79
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	97.79
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	97.77
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	97.75
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	97.7
PLN03210	1153	Resistant to P. syringae 6; Provisional	97.57
PLN03210	1153	Resistant to P. syringae 6; Provisional	97.5
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	97.49
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	97.48
KOG4237	498	consensus Extracellular matrix protein slit, conta	97.35
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	97.26
KOG4237	498	consensus Extracellular matrix protein slit, conta	97.26
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	97.24
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	97.17
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	97.16
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	97.16
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	97.16
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	97.11
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	97.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	96.98
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	96.9
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	96.87
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	96.83
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	96.8
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	96.55
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	96.45
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	96.4
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.36
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	96.27
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.2
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	95.98
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	95.81
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	95.79
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	95.48
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	95.11
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	94.67
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	94.35
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	94.31
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	93.26
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	93.23
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	93.02
smart00370	26	LRR Leucine-rich repeats, outliers.	93.02
KOG2982	418	consensus Uncharacterized conserved protein [Funct	91.97
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	91.47
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	90.45
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	88.57
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	87.82
KOG0473	326	consensus Leucine-rich repeat protein [Function un	87.49
KOG2982	418	consensus Uncharacterized conserved protein [Funct	85.05
KOG2123	388	consensus Uncharacterized conserved protein [Funct	84.91
smart00365	26	LRR_SD22 Leucine-rich repeat, SDS22-like subfamily	84.57
smart00364	26	LRR_BAC Leucine-rich repeats, bacterial type.	83.53
smart00368	28	LRR_RI Leucine rich repeat, ribonuclease inhibitor	80.2

>PLN03150 hypothetical protein; Provisional

Probab=99.66  E-value=2.2e-16  Score=143.33  Aligned_cols=128  Identities=20%  Similarity=0.244  Sum_probs=102.7

Q ss_pred             CCCCchhHHHHHHHHcCCCCCCCCCCCCCCCCCCC-----ccccceeCC---C--CCEEEEEeCccC-CCcccCCcCCcc
Q 046467           35 GLLSSPIQLEREALLATGWWVNNWATTGNYTSDHC-----KWTGISCNS---A--GSVIGVSLLWYE-NDNIIGELGRFK  103 (183)
Q Consensus        35 ~~~~~~l~~~~~~l~~~~~~~~~~~~~~W~~~~~C-----~w~gv~C~~---~--~~v~~L~l~~l~-~g~l~~~~g~l~  103 (183)
                      ..+..+++.+|..+....       ..+|++ ++|     .|.|+.|..   .  ..++.|+|.+.+ .|.+|..     
T Consensus       371 ~~~~~aL~~~k~~~~~~~-------~~~W~g-~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~g~ip~~-----  437 (623)
T PLN03150        371 LEEVSALQTLKSSLGLPL-------RFGWNG-DPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPND-----  437 (623)
T ss_pred             chHHHHHHHHHHhcCCcc-------cCCCCC-CCCCCcccccccceeeccCCCCceEEEEEECCCCCccccCCHH-----
Confidence            344556666666552211       236865 455     699999953   1  248888888543 5666655     


Q ss_pred             CCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCccccccccEEEcccCCcccccCCc
Q 046467          104 FSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIFYKIVLMLSAGVCFYNAE  176 (183)
Q Consensus       104 ~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~~~~~~~~e  176 (183)
                      ++++++|+.|+|++|+ ++|.+|+.++.+++|+.|+|++|+++|.+|..++++++|+.|+|++|+++|.+|.+
T Consensus       438 i~~L~~L~~L~Ls~N~-l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~  509 (623)
T PLN03150        438 ISKLRHLQSINLSGNS-IRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAA  509 (623)
T ss_pred             HhCCCCCCEEECCCCc-ccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChH
Confidence            7788999999999999 99999999999999999999999999999999999999999999999999998864

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.62  E-value=1.2e-15  Score=143.95  Aligned_cols=129  Identities=22%  Similarity=0.319  Sum_probs=82.0

Q ss_pred             CCCchhHHHHHHHHcCCCCCCCCCCCCCC-CCCCCccccceeCCCCCEEEEEeCccC-CCcccCCcCCccCCCCCCCcEE
Q 046467           36 LLSSPIQLEREALLATGWWVNNWATTGNY-TSDHCKWTGISCNSAGSVIGVSLLWYE-NDNIIGELGRFKFSCFPNLRSF  113 (183)
Q Consensus        36 ~~~~~l~~~~~~l~~~~~~~~~~~~~~W~-~~~~C~w~gv~C~~~~~v~~L~l~~l~-~g~l~~~~g~l~~~~l~~L~~L  113 (183)
                      .|..++.++++++.+..     ..+.+|+ ..++|.|.|+.|+..++|+.|++.+.. .|.++..     +..+++|++|
T Consensus        29 ~~~~~l~~~~~~~~~~~-----~~~~~w~~~~~~c~w~gv~c~~~~~v~~L~L~~~~i~~~~~~~-----~~~l~~L~~L   98 (968)
T PLN00113         29 EELELLLSFKSSINDPL-----KYLSNWNSSADVCLWQGITCNNSSRVVSIDLSGKNISGKISSA-----IFRLPYIQTI   98 (968)
T ss_pred             HHHHHHHHHHHhCCCCc-----ccCCCCCCCCCCCcCcceecCCCCcEEEEEecCCCccccCChH-----HhCCCCCCEE
Confidence            56678888888874322     2267784 678999999999987899999998542 4444433     4455555555


Q ss_pred             eccCCCCccccCCcccc-CCCC----------------------CCEEEccCCccccCCCCCccccccccEEEcccCCcc
Q 046467          114 KIRSNYLLSGSIPSEIT-VLST----------------------IRTLELTSNNLTGKLPNFTVTYYIFYKIVLMLSAGV  170 (183)
Q Consensus       114 ~ls~N~~l~G~iP~~~~-~l~~----------------------L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~~~  170 (183)
                      ++++|+ ++|.+|..+. .+++                      |++|++++|.++|.+|..++++++|++|+|++|++.
T Consensus        99 ~Ls~n~-~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~  177 (968)
T PLN00113         99 NLSNNQ-LSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLV  177 (968)
T ss_pred             ECCCCc-cCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCccc
Confidence            555555 5555555433 4444                      555555555555555656666666666666666666


Q ss_pred             cccCC
Q 046467          171 CFYNA  175 (183)
Q Consensus       171 ~~~~~  175 (183)
                      +.+|.
T Consensus       178 ~~~p~  182 (968)
T PLN00113        178 GKIPN  182 (968)
T ss_pred             ccCCh
Confidence            55553

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.03  E-value=2.7e-10  Score=107.76  Aligned_cols=72  Identities=21%  Similarity=0.314  Sum_probs=63.0

Q ss_pred             CCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCccccccccEEEcccCCcccccCCc
Q 046467          104 FSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIFYKIVLMLSAGVCFYNAE  176 (183)
Q Consensus       104 ~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~~~~~~~~e  176 (183)
                      +.++++|++|++++|. ++|.+|..+..+++|++|||++|+++|.+|..+.++++|+.|++++|++.|.+|.+
T Consensus       519 ~~~l~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~  590 (968)
T PLN00113        519 LSSCKKLVSLDLSHNQ-LSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPST  590 (968)
T ss_pred             HcCccCCCEEECCCCc-ccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCc
Confidence            6678888888998888 88888888888889999999999999999988888889999999999988888765

>PLN03150 hypothetical protein; Provisional

Probab=99.01  E-value=5e-10  Score=101.97  Aligned_cols=95  Identities=22%  Similarity=0.348  Sum_probs=80.4

Q ss_pred             CCEEEEEeCccC-CCcccCCcCCccCCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCcccc-c
Q 046467           80 GSVIGVSLLWYE-NDNIIGELGRFKFSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTY-Y  157 (183)
Q Consensus        80 ~~v~~L~l~~l~-~g~l~~~~g~l~~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l-~  157 (183)
                      .+++.|++.+.. .|.+|..     ++.+++|+.|++++|+ ++|.+|+.++++++|++|+|++|+|+|.+|..++.. .
T Consensus       442 ~~L~~L~Ls~N~l~g~iP~~-----~~~l~~L~~LdLs~N~-lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~  515 (623)
T PLN03150        442 RHLQSINLSGNSIRGNIPPS-----LGSITSLEVLDLSYNS-FNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLL  515 (623)
T ss_pred             CCCCEEECCCCcccCcCChH-----HhCCCCCCEEECCCCC-CCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccc
Confidence            356677776432 4566655     7889999999999999 999999999999999999999999999999998864 5


Q ss_pred             cccEEEcccCCcccccCCccccc
Q 046467          158 IFYKIVLMLSAGVCFYNAEEVCA  180 (183)
Q Consensus       158 ~L~~L~L~~n~~~~~~~~e~~~~  180 (183)
                      ++..+++..|+..|-.|....|.
T Consensus       516 ~~~~l~~~~N~~lc~~p~l~~C~  538 (623)
T PLN03150        516 HRASFNFTDNAGLCGIPGLRACG  538 (623)
T ss_pred             cCceEEecCCccccCCCCCCCCc
Confidence            77899999999999888766673

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.92  E-value=1.2e-09  Score=69.81  Aligned_cols=61  Identities=28%  Similarity=0.335  Sum_probs=54.1

Q ss_pred             CCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCccccccccEEEcccCCc
Q 046467          108 PNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIFYKIVLMLSAG  169 (183)
Q Consensus       108 ~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~~  169 (183)
                      ++|++|++++|+ ++..-+..+..+++|++|++++|+++.--|..+..+++|++|++++|++
T Consensus         1 p~L~~L~l~~n~-l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNK-LTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSST-ESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCC-CCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            478999999999 9965456789999999999999999976677899999999999999974

...

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=98.46  E-value=6.9e-08  Score=82.84  Aligned_cols=83  Identities=16%  Similarity=0.205  Sum_probs=66.3

Q ss_pred             CEEEEEeCccCCCcccCCcCCccCCCCCCCcEEeccCCCCcc----------------------ccCCcc-ccCCCCCCE
Q 046467           81 SVIGVSLLWYENDNIIGELGRFKFSCFPNLRSFKIRSNYLLS----------------------GSIPSE-ITVLSTIRT  137 (183)
Q Consensus        81 ~v~~L~l~~l~~g~l~~~~g~l~~~~l~~L~~L~ls~N~~l~----------------------G~iP~~-~~~l~~L~~  137 (183)
                      +++-|++++.--+.+|.+     ++.+..||.||++.|+ |.                      |.+|+. +.++.+|.+
T Consensus       436 kLt~L~L~NN~Ln~LP~e-----~~~lv~Lq~LnlS~Nr-Fr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~t  509 (565)
T KOG0472|consen  436 KLTFLDLSNNLLNDLPEE-----MGSLVRLQTLNLSFNR-FRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTT  509 (565)
T ss_pred             cceeeecccchhhhcchh-----hhhhhhhheecccccc-cccchHHHhhHHHHHHHHhccccccccChHHhhhhhhcce
Confidence            455566664324566666     6677789999999887 54                      334444 788999999


Q ss_pred             EEccCCccccCCCCCccccccccEEEcccCCcc
Q 046467          138 LELTSNNLTGKLPNFTVTYYIFYKIVLMLSAGV  170 (183)
Q Consensus       138 L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~~~  170 (183)
                      ||+.+|.+. .||+.++++++|++|.|++|+|+
T Consensus       510 LDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  510 LDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             eccCCCchh-hCChhhccccceeEEEecCCccC
Confidence            999999998 89999999999999999999998

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=98.43  E-value=1.2e-08  Score=78.88  Aligned_cols=83  Identities=17%  Similarity=0.236  Sum_probs=62.1

Q ss_pred             CCEEEEEeCccCCCcccCCcCCccCCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCccccccc
Q 046467           80 GSVIGVSLLWYENDNIIGELGRFKFSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIF  159 (183)
Q Consensus        80 ~~v~~L~l~~l~~g~l~~~~g~l~~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L  159 (183)
                      ..++.|.+++..--.+|+.     +..+.+|+.|++++|+ +. .+|..+..+++|+.|+++-|++. .+|..+|++|.|
T Consensus        33 s~ITrLtLSHNKl~~vppn-----ia~l~nlevln~~nnq-ie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~l  104 (264)
T KOG0617|consen   33 SNITRLTLSHNKLTVVPPN-----IAELKNLEVLNLSNNQ-IE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPAL  104 (264)
T ss_pred             hhhhhhhcccCceeecCCc-----HHHhhhhhhhhcccch-hh-hcChhhhhchhhhheecchhhhh-cCccccCCCchh
Confidence            3567777765433445555     6677788888888888 77 67888888888888888888887 678888888888


Q ss_pred             cEEEcccCCcc
Q 046467          160 YKIVLMLSAGV  170 (183)
Q Consensus       160 ~~L~L~~n~~~  170 (183)
                      +.|+|.-||++
T Consensus       105 evldltynnl~  115 (264)
T KOG0617|consen  105 EVLDLTYNNLN  115 (264)
T ss_pred             hhhhccccccc
Confidence            88888777776

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.18  E-value=2.4e-06  Score=54.34  Aligned_cols=60  Identities=28%  Similarity=0.442  Sum_probs=46.3

Q ss_pred             CEEEEEeCccCCCcccCCcCCccCCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCcc
Q 046467           81 SVIGVSLLWYENDNIIGELGRFKFSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNL  145 (183)
Q Consensus        81 ~v~~L~l~~l~~g~l~~~~g~l~~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l  145 (183)
                      +++.|++.+.+-..+|...    |..+++|++|++++|. ++..-|..|..+++|++|++++|++
T Consensus         2 ~L~~L~l~~n~l~~i~~~~----f~~l~~L~~L~l~~N~-l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDS----FSNLPNLETLDLSNNN-LTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TESEEEETSSTESEECTTT----TTTGTTESEEEETSSS-ESEEETTTTTTSTTESEEEETSSSB
T ss_pred             cCcEEECCCCCCCccCHHH----HcCCCCCCEeEccCCc-cCccCHHHHcCCCCCCEEeCcCCcC
Confidence            3556666643223343221    7889999999999999 9977777899999999999999975

...

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.16  E-value=1.3e-06  Score=52.41  Aligned_cols=36  Identities=28%  Similarity=0.620  Sum_probs=21.3

Q ss_pred             CCcEEeccCCCCccccCCccccCCCCCCEEEccCCccc
Q 046467          109 NLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLT  146 (183)
Q Consensus       109 ~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~  146 (183)
                      +|++|++++|+ ++ .+|+.+++|++|++|++++|+++
T Consensus         2 ~L~~L~l~~N~-i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQ-IT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS--S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCC-Cc-ccCchHhCCCCCCEEEecCCCCC
Confidence            56666666666 66 45555666666666666666655

...

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.14  E-value=2.1e-06  Score=51.49  Aligned_cols=39  Identities=18%  Similarity=0.167  Sum_probs=33.8

Q ss_pred             CCCCEEEccCCccccCCCCCccccccccEEEcccCCcccc
Q 046467          133 STIRTLELTSNNLTGKLPNFTVTYYIFYKIVLMLSAGVCF  172 (183)
Q Consensus       133 ~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~~~~~  172 (183)
                      ++|++|++++|+++ .+|++++++++|+.|++++|+++-.
T Consensus         1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~i   39 (44)
T PF12799_consen    1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISDI   39 (44)
T ss_dssp             TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSBE
T ss_pred             CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCCC
Confidence            47999999999999 7998899999999999999998854

...

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=98.03  E-value=2e-06  Score=74.10  Aligned_cols=63  Identities=22%  Similarity=0.345  Sum_probs=57.4

Q ss_pred             CCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCccccccccEEEcccCCcc
Q 046467          104 FSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIFYKIVLMLSAGV  170 (183)
Q Consensus       104 ~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~~~  170 (183)
                      ..+++++..||+.+|+ ++ ..|+++..+++|+.||+|+|.++ .+|.++|++ .|+.|.+.+|++.
T Consensus       248 ~~~L~~l~vLDLRdNk-lk-e~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlr  310 (565)
T KOG0472|consen  248 LKHLNSLLVLDLRDNK-LK-EVPDEICLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLR  310 (565)
T ss_pred             hcccccceeeeccccc-cc-cCchHHHHhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchH
Confidence            4588999999999999 98 79999999999999999999999 489999999 8999999999875

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=97.84  E-value=7.3e-07  Score=69.11  Aligned_cols=64  Identities=25%  Similarity=0.338  Sum_probs=31.0

Q ss_pred             CCCCCCCcEEeccCCCCccc-cCCccccCCCCCCEEEccCCccccCCCCCccccccccEEEcccCCc
Q 046467          104 FSCFPNLRSFKIRSNYLLSG-SIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIFYKIVLMLSAG  169 (183)
Q Consensus       104 ~~~l~~L~~L~ls~N~~l~G-~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~~  169 (183)
                      |+.++.|+.||++.|+ ++- .+|..|..++.|+.|+|++|.|. -+|+.++++++|+.|.+..|.+
T Consensus        98 fgs~p~levldltynn-l~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndl  162 (264)
T KOG0617|consen   98 FGSFPALEVLDLTYNN-LNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDL  162 (264)
T ss_pred             cCCCchhhhhhccccc-cccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCch
Confidence            4555555555555555 432 23444444444444455555444 3444455555555554444443

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=97.84  E-value=2.3e-05  Score=60.66  Aligned_cols=65  Identities=17%  Similarity=0.234  Sum_probs=27.9

Q ss_pred             CCCCCCCcEEeccCCCCccccCCccc-cCCCCCCEEEccCCccccCCC-CCccccccccEEEcccCCcc
Q 046467          104 FSCFPNLRSFKIRSNYLLSGSIPSEI-TVLSTIRTLELTSNNLTGKLP-NFTVTYYIFYKIVLMLSAGV  170 (183)
Q Consensus       104 ~~~l~~L~~L~ls~N~~l~G~iP~~~-~~l~~L~~L~Ls~N~l~G~iP-~~l~~l~~L~~L~L~~n~~~  170 (183)
                      +..+++|+.|++++|+ ++ .+++.+ ..+++|++|++++|++..--- ..+..+++|+.|+|.+|+..
T Consensus        60 l~~L~~L~~L~L~~N~-I~-~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~  126 (175)
T PF14580_consen   60 LPGLPRLKTLDLSNNR-IS-SISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC  126 (175)
T ss_dssp             ----TT--EEE--SS-----S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred             ccChhhhhhcccCCCC-CC-ccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence            5667888888888888 77 355444 357888888888888864211 34667888888888888775

>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=97.79  E-value=6.6e-06  Score=48.90  Aligned_cols=37  Identities=19%  Similarity=0.389  Sum_probs=23.4

Q ss_pred             CCchhHHHHHHHHcCCCCCCCCCCCCCCC---CCCCccccceeC
Q 046467           37 LSSPIQLEREALLATGWWVNNWATTGNYT---SDHCKWTGISCN   77 (183)
Q Consensus        37 ~~~~l~~~~~~l~~~~~~~~~~~~~~W~~---~~~C~w~gv~C~   77 (183)
                      |..+|+++|+++...+.    ..+.+|+.   .++|.|.||.|+
T Consensus         4 d~~aLl~~k~~l~~~~~----~~l~~W~~~~~~~~C~W~GV~Cd   43 (43)
T PF08263_consen    4 DRQALLAFKKSLNNDPS----GVLSSWNPSSDSDPCSWSGVTCD   43 (43)
T ss_dssp             HHHHHHHHHHCTT-SC-----CCCTT--TT--S-CCCSTTEEE-
T ss_pred             HHHHHHHHHHhcccccC----cccccCCCcCCCCCeeeccEEeC
Confidence            45678888888765332    23788953   699999999995

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=97.79  E-value=4.6e-06  Score=75.51  Aligned_cols=84  Identities=17%  Similarity=0.193  Sum_probs=65.0

Q ss_pred             CEEEEEeCccCCCcccCCcCCccCCCCCCCcEEeccCCCCccccCCcc-ccCCCCCCEEEccCCccccCCCCCccccccc
Q 046467           81 SVIGVSLLWYENDNIIGELGRFKFSCFPNLRSFKIRSNYLLSGSIPSE-ITVLSTIRTLELTSNNLTGKLPNFTVTYYIF  159 (183)
Q Consensus        81 ~v~~L~l~~l~~g~l~~~~g~l~~~~l~~L~~L~ls~N~~l~G~iP~~-~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L  159 (183)
                      .++-|++++.+-..+|..     +-.-+++.+|+||+|+ +. +||.. +.+++.|-+||||+|++. .+|+++.++..|
T Consensus       104 dLt~lDLShNqL~EvP~~-----LE~AKn~iVLNLS~N~-Ie-tIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~L  175 (1255)
T KOG0444|consen  104 DLTILDLSHNQLREVPTN-----LEYAKNSIVLNLSYNN-IE-TIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSML  175 (1255)
T ss_pred             cceeeecchhhhhhcchh-----hhhhcCcEEEEcccCc-cc-cCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhh
Confidence            455566654333344433     5566778899999999 87 68865 578999999999999997 799999999999


Q ss_pred             cEEEcccCCcccc
Q 046467          160 YKIVLMLSAGVCF  172 (183)
Q Consensus       160 ~~L~L~~n~~~~~  172 (183)
                      ++|.|++|++--|
T Consensus       176 qtL~Ls~NPL~hf  188 (1255)
T KOG0444|consen  176 QTLKLSNNPLNHF  188 (1255)
T ss_pred             hhhhcCCChhhHH
Confidence            9999999987644

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=97.77  E-value=2.7e-05  Score=60.30  Aligned_cols=65  Identities=12%  Similarity=0.210  Sum_probs=29.6

Q ss_pred             CC-CCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCc-cccccccEEEcccCCcccc
Q 046467          104 FS-CFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFT-VTYYIFYKIVLMLSAGVCF  172 (183)
Q Consensus       104 ~~-~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l-~~l~~L~~L~L~~n~~~~~  172 (183)
                      ++ .+.+|+.|++++|. ++. ++ .+..++.|++|++++|+++ .++..+ ..+++|+.|+|++|++...
T Consensus        37 L~~~l~~L~~L~Ls~N~-I~~-l~-~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~L~L~~N~I~~l  103 (175)
T PF14580_consen   37 LGATLDKLEVLDLSNNQ-ITK-LE-GLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQELYLSNNKISDL  103 (175)
T ss_dssp             --TT-TT--EEE-TTS---S---T-T----TT--EEE--SS----S-CHHHHHH-TT--EEE-TTS---SC
T ss_pred             hhhhhcCCCEEECCCCC-Ccc-cc-CccChhhhhhcccCCCCCC-ccccchHHhCCcCCEEECcCCcCCCh
Confidence            44 57899999999999 884 44 5778999999999999999 566555 3689999999999999754

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=97.75  E-value=9.4e-06  Score=73.56  Aligned_cols=65  Identities=28%  Similarity=0.341  Sum_probs=48.2

Q ss_pred             CCCCCCCcEEeccCCCCc-cccCCccccCCCCCCEEEccCCccccCCCCCccccccccEEEcccCCcc
Q 046467          104 FSCFPNLRSFKIRSNYLL-SGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIFYKIVLMLSAGV  170 (183)
Q Consensus       104 ~~~l~~L~~L~ls~N~~l-~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~~~  170 (183)
                      +..+++|+.+.+..|+ + +..||+.+..+..|..||||+|++. .+|..+-.-+++-.|+|++|++-
T Consensus        74 Ls~Lp~LRsv~~R~N~-LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie  139 (1255)
T KOG0444|consen   74 LSDLPRLRSVIVRDNN-LKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE  139 (1255)
T ss_pred             hccchhhHHHhhhccc-cccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc
Confidence            5567777777777776 5 3347777778888888888888887 67777777777777777777764

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=97.70  E-value=3.5e-05  Score=71.97  Aligned_cols=61  Identities=20%  Similarity=0.164  Sum_probs=45.7

Q ss_pred             CCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCccccccccEEEcccCCcccccC
Q 046467          108 PNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIFYKIVLMLSAGVCFYN  174 (183)
Q Consensus       108 ~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~~~~~~~  174 (183)
                      ++|+.|++++|. +++ +|..   ..+|+.|++++|+++ .||..+.++++|+.|+|++|++++..+
T Consensus       402 s~L~~LdLS~N~-Lss-IP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~  462 (788)
T PRK15387        402 SELKELMVSGNR-LTS-LPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTL  462 (788)
T ss_pred             cCCCEEEccCCc-CCC-CCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHH
Confidence            355666666666 663 5543   245677888888887 789899999999999999999997744

>PLN03210 Resistant to P

Probab=97.57  E-value=0.00022  Score=69.47  Aligned_cols=64  Identities=20%  Similarity=0.257  Sum_probs=38.6

Q ss_pred             CCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCccccccccEEEcccCCc
Q 046467          104 FSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIFYKIVLMLSAG  169 (183)
Q Consensus       104 ~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~~  169 (183)
                      +..+++|+.|++++|. .-..+|..++++++|+.|++++|+.-+.+|..+ ++++|+.|+|+++..
T Consensus       653 ls~l~~Le~L~L~~c~-~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~  716 (1153)
T PLN03210        653 LSMATNLETLKLSDCS-SLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSR  716 (1153)
T ss_pred             cccCCcccEEEecCCC-CccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCC
Confidence            4455666666666665 445666666666666666666655555666544 555666666555443

syringae 6; Provisional

>PLN03210 Resistant to P

Probab=97.50  E-value=0.00029  Score=68.73  Aligned_cols=71  Identities=14%  Similarity=0.208  Sum_probs=58.5

Q ss_pred             CCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCccccccccEEEcccCCcccccCCc
Q 046467          104 FSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIFYKIVLMLSAGVCFYNAE  176 (183)
Q Consensus       104 ~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~~~~~~~~e  176 (183)
                      +..+++|+.|++++++ ..+.+|. +..+++|++|+|++|.....+|.+++++++|+.|+++.++....+|..
T Consensus       630 ~~~l~~Lk~L~Ls~~~-~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~  700 (1153)
T PLN03210        630 VHSLTGLRNIDLRGSK-NLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTG  700 (1153)
T ss_pred             cccCCCCCEEECCCCC-CcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCc
Confidence            5578889999998876 5567774 788899999999998877889999999999999999887766666654

syringae 6; Provisional

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=97.49  E-value=1.2e-05  Score=75.16  Aligned_cols=63  Identities=19%  Similarity=0.262  Sum_probs=44.9

Q ss_pred             CCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCccccccccEEEcccCCcc
Q 046467          104 FSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIFYKIVLMLSAGV  170 (183)
Q Consensus       104 ~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~~~  170 (183)
                      +.++..|+.|+||+|. ++ .+|..+.+++.|++|...+|++. .+| ++.++++|+.+|+++|+++
T Consensus       403 ~~kle~LeeL~LSGNk-L~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~  465 (1081)
T KOG0618|consen  403 LRKLEELEELNLSGNK-LT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLS  465 (1081)
T ss_pred             HhchHHhHHHhcccch-hh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhh
Confidence            5566777777777777 77 57777777777777777777766 455 6777777777777777766

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=97.48  E-value=2.2e-05  Score=70.53  Aligned_cols=65  Identities=12%  Similarity=0.079  Sum_probs=41.6

Q ss_pred             CCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCccccccccEEEcccCCc
Q 046467          104 FSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIFYKIVLMLSAG  169 (183)
Q Consensus       104 ~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~~  169 (183)
                      +-.|+.|+.|++|+|. +.-..++.|.-+++|++|||++|+++---|.++.-+.+|+.|+|++|..
T Consensus       289 lfgLt~L~~L~lS~Na-I~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi  353 (873)
T KOG4194|consen  289 LFGLTSLEQLDLSYNA-IQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSI  353 (873)
T ss_pred             ccccchhhhhccchhh-hheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccch
Confidence            4456677777777777 7766677777777777777777777743334444455555555555443

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=97.35  E-value=4.5e-05  Score=65.60  Aligned_cols=68  Identities=25%  Similarity=0.353  Sum_probs=44.4

Q ss_pred             CCCCCCCcEEeccCCCCccccCCccccC------------------------CCCCCEEEccCCccccCCCCCccccccc
Q 046467          104 FSCFPNLRSFKIRSNYLLSGSIPSEITV------------------------LSTIRTLELTSNNLTGKLPNFTVTYYIF  159 (183)
Q Consensus       104 ~~~l~~L~~L~ls~N~~l~G~iP~~~~~------------------------l~~L~~L~Ls~N~l~G~iP~~l~~l~~L  159 (183)
                      |..|++|+.|++++|. +++.-+..|..                        ++.|++|+|.+|+++---|..+..+.+|
T Consensus       270 f~~L~~L~~lnlsnN~-i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l  348 (498)
T KOG4237|consen  270 FKKLPNLRKLNLSNNK-ITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSL  348 (498)
T ss_pred             HhhcccceEeccCCCc-cchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEeccccccccee
Confidence            7788888888888888 88765555554                        4555556666666655555555555666


Q ss_pred             cEEEcccCCcccc
Q 046467          160 YKIVLMLSAGVCF  172 (183)
Q Consensus       160 ~~L~L~~n~~~~~  172 (183)
                      .+|+|..|+|.|-
T Consensus       349 ~~l~l~~Np~~Cn  361 (498)
T KOG4237|consen  349 STLNLLSNPFNCN  361 (498)
T ss_pred             eeeehccCcccCc
Confidence            6666666666554

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=97.26  E-value=6.8e-05  Score=70.17  Aligned_cols=83  Identities=18%  Similarity=0.240  Sum_probs=64.8

Q ss_pred             EEEEEeCccCCCcccCCcCCccCCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCccccccccE
Q 046467           82 VIGVSLLWYENDNIIGELGRFKFSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIFYK  161 (183)
Q Consensus        82 v~~L~l~~l~~g~l~~~~g~l~~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~  161 (183)
                      +.+|++++...+.+|-.     +..+.+|+.|+++.|. +. ..|.+..++++|+++.|..|.+. ..|.++..+++|+.
T Consensus        47 L~~l~lsnn~~~~fp~~-----it~l~~L~~ln~s~n~-i~-~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~  118 (1081)
T KOG0618|consen   47 LKSLDLSNNQISSFPIQ-----ITLLSHLRQLNLSRNY-IR-SVPSSCSNMRNLQYLNLKNNRLQ-SLPASISELKNLQY  118 (1081)
T ss_pred             eEEeeccccccccCCch-----hhhHHHHhhcccchhh-Hh-hCchhhhhhhcchhheeccchhh-cCchhHHhhhcccc
Confidence            56677776545666644     6777888888888887 66 67888888888888888888887 68888888888888


Q ss_pred             EEcccCCcccc
Q 046467          162 IVLMLSAGVCF  172 (183)
Q Consensus       162 L~L~~n~~~~~  172 (183)
                      |+++.|+|.=+
T Consensus       119 LdlS~N~f~~~  129 (1081)
T KOG0618|consen  119 LDLSFNHFGPI  129 (1081)
T ss_pred             cccchhccCCC
Confidence            88888888754

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=97.26  E-value=5.5e-05  Score=65.11  Aligned_cols=85  Identities=20%  Similarity=0.257  Sum_probs=61.5

Q ss_pred             CEEEEEeCccCCCcccCCcCCccCCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEc-cCCccccCCCC-Ccccccc
Q 046467           81 SVIGVSLLWYENDNIIGELGRFKFSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLEL-TSNNLTGKLPN-FTVTYYI  158 (183)
Q Consensus        81 ~v~~L~l~~l~~g~l~~~~g~l~~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~L-s~N~l~G~iP~-~l~~l~~  158 (183)
                      ..+.|+|+..+-..||+.    .|..+++|+.|||+.|+ ++-.-|+.|..+.+|..|-+ ++|+++ .+|. .++.+.+
T Consensus        68 ~tveirLdqN~I~~iP~~----aF~~l~~LRrLdLS~N~-Is~I~p~AF~GL~~l~~Lvlyg~NkI~-~l~k~~F~gL~s  141 (498)
T KOG4237|consen   68 ETVEIRLDQNQISSIPPG----AFKTLHRLRRLDLSKNN-ISFIAPDAFKGLASLLSLVLYGNNKIT-DLPKGAFGGLSS  141 (498)
T ss_pred             cceEEEeccCCcccCChh----hccchhhhceecccccc-hhhcChHhhhhhHhhhHHHhhcCCchh-hhhhhHhhhHHH
Confidence            457777774322333322    18899999999999999 99888899999988877755 448888 5664 5778888


Q ss_pred             ccEEEcccCCccc
Q 046467          159 FYKIVLMLSAGVC  171 (183)
Q Consensus       159 L~~L~L~~n~~~~  171 (183)
                      |+.|.+-.|...|
T Consensus       142 lqrLllNan~i~C  154 (498)
T KOG4237|consen  142 LQRLLLNANHINC  154 (498)
T ss_pred             HHHHhcChhhhcc
Confidence            8877765555554

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=97.24  E-value=0.00069  Score=63.33  Aligned_cols=35  Identities=14%  Similarity=0.137  Sum_probs=19.7

Q ss_pred             CCCEEEccCCccccCCCCCccccccccEEEcccCCccc
Q 046467          134 TIRTLELTSNNLTGKLPNFTVTYYIFYKIVLMLSAGVC  171 (183)
Q Consensus       134 ~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~~~~  171 (183)
                      +|++|++++|+++ .+|..+.  ++|+.|+|++|++..
T Consensus       263 ~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~  297 (754)
T PRK15370        263 ALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRT  297 (754)
T ss_pred             CCCEEECcCCccC-ccccccC--CCCcEEECCCCcccc
Confidence            4555566655555 3555443  356666666666553

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=97.17  E-value=0.00015  Score=68.86  Aligned_cols=68  Identities=22%  Similarity=0.317  Sum_probs=59.1

Q ss_pred             CCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCccccccccEEEcccCCccccc
Q 046467          104 FSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIFYKIVLMLSAGVCFY  173 (183)
Q Consensus       104 ~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~~~~~~  173 (183)
                      |..++.|++||+++|. =-+.+|.+++++-+|++|+++...++ .+|..++++..|.+|+++.+.-..++
T Consensus       567 f~~m~~LrVLDLs~~~-~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~  634 (889)
T KOG4658|consen  567 FRSLPLLRVLDLSGNS-SLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESI  634 (889)
T ss_pred             HhhCcceEEEECCCCC-ccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccc
Confidence            6678999999999887 55689999999999999999999998 89999999999999999877655444

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=97.16  E-value=7.3e-05  Score=61.61  Aligned_cols=89  Identities=16%  Similarity=0.091  Sum_probs=59.5

Q ss_pred             CCEEEEEeCccCC-CcccCCcCCccCCCCCCCcEEeccCCCCccc----cCCccccCC-CCCCEEEccCCccccCCC---
Q 046467           80 GSVIGVSLLWYEN-DNIIGELGRFKFSCFPNLRSFKIRSNYLLSG----SIPSEITVL-STIRTLELTSNNLTGKLP---  150 (183)
Q Consensus        80 ~~v~~L~l~~l~~-g~l~~~~g~l~~~~l~~L~~L~ls~N~~l~G----~iP~~~~~l-~~L~~L~Ls~N~l~G~iP---  150 (183)
                      ..++.|++.+... +..+..+..+ ... ++|++|++++|+ +++    .+...+..+ ++|++|++++|++++..+   
T Consensus        81 ~~L~~L~l~~~~~~~~~~~~~~~l-~~~-~~L~~L~ls~~~-~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~  157 (319)
T cd00116          81 CGLQELDLSDNALGPDGCGVLESL-LRS-SSLQELKLNNNG-LGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEAL  157 (319)
T ss_pred             CceeEEEccCCCCChhHHHHHHHH-hcc-CcccEEEeeCCc-cchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHH
Confidence            4778888874421 1122221111 112 559999999999 873    344456667 889999999999986433   


Q ss_pred             -CCccccccccEEEcccCCccc
Q 046467          151 -NFTVTYYIFYKIVLMLSAGVC  171 (183)
Q Consensus       151 -~~l~~l~~L~~L~L~~n~~~~  171 (183)
                       ..+..+++|+.|+++.|++.+
T Consensus       158 ~~~~~~~~~L~~L~l~~n~l~~  179 (319)
T cd00116         158 AKALRANRDLKELNLANNGIGD  179 (319)
T ss_pred             HHHHHhCCCcCEEECcCCCCch
Confidence             345567789999999998874

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=97.16  E-value=0.00012  Score=65.51  Aligned_cols=63  Identities=21%  Similarity=0.312  Sum_probs=51.4

Q ss_pred             CCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCccccccccEEEcccCCcc
Q 046467          104 FSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIFYKIVLMLSAGV  170 (183)
Q Consensus       104 ~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~~~  170 (183)
                      ++.+.+|+.|++..|+ +. .+|++++.|+ |..||+|.|+++ .||-.+.+|+.|++|.|.+|++-
T Consensus       185 l~~l~slr~l~vrRn~-l~-~lp~El~~Lp-Li~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq  247 (722)
T KOG0532|consen  185 LGYLTSLRDLNVRRNH-LE-DLPEELCSLP-LIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ  247 (722)
T ss_pred             hhhHHHHHHHHHhhhh-hh-hCCHHHhCCc-eeeeecccCcee-ecchhhhhhhhheeeeeccCCCC
Confidence            5666777777777777 66 5777777444 888999999998 79999999999999999999875

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=97.16  E-value=0.00027  Score=60.58  Aligned_cols=65  Identities=22%  Similarity=0.353  Sum_probs=45.4

Q ss_pred             CCCCC-CCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCccccccccEEEcccCCccc
Q 046467          104 FSCFP-NLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIFYKIVLMLSAGVC  171 (183)
Q Consensus       104 ~~~l~-~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~~~~  171 (183)
                      ...+. +|+.|++++|. +. .+|..++.++.|+.|++++|+++ .+|...+..++|+.|+++.|++.-
T Consensus       135 ~~~~~~nL~~L~l~~N~-i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls~N~i~~  200 (394)
T COG4886         135 IGLLKSNLKELDLSDNK-IE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKISD  200 (394)
T ss_pred             cccchhhcccccccccc-hh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhheeccCCcccc
Confidence            34443 67777777777 66 56666777777777777777777 566666677777777777777653

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=97.11  E-value=0.0013  Score=61.49  Aligned_cols=60  Identities=28%  Similarity=0.436  Sum_probs=39.0

Q ss_pred             CCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCccccccccEEEcccCCcccccCC
Q 046467          108 PNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIFYKIVLMLSAGVCFYNA  175 (183)
Q Consensus       108 ~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~~~~~~~~  175 (183)
                      ++|+.|++++|+ |+ .+|..+.  ..|+.|+|++|++. .||..+.  ++|+.|+|++|++.. +|.
T Consensus       220 ~nL~~L~Ls~N~-Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~~-LP~  279 (754)
T PRK15370        220 GNIKTLYANSNQ-LT-SIPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLDLFHNKISC-LPE  279 (754)
T ss_pred             cCCCEEECCCCc-cc-cCChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEECcCCccCc-ccc
Confidence            356666666666 66 4555442  35777777777776 6666554  478888888888773 443

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=97.00  E-value=0.00022  Score=36.19  Aligned_cols=20  Identities=35%  Similarity=0.566  Sum_probs=12.7

Q ss_pred             CCEEEccCCccccCCCCCccc
Q 046467          135 IRTLELTSNNLTGKLPNFTVT  155 (183)
Q Consensus       135 L~~L~Ls~N~l~G~iP~~l~~  155 (183)
                      |++|||++|+|+ .||+++++
T Consensus         2 L~~Ldls~n~l~-~ip~~~~~   21 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPSSFSN   21 (22)
T ss_dssp             ESEEEETSSEES-EEGTTTTT
T ss_pred             ccEEECCCCcCE-eCChhhcC
Confidence            566666666666 66665544

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=96.98  E-value=0.00038  Score=62.81  Aligned_cols=65  Identities=18%  Similarity=0.178  Sum_probs=36.8

Q ss_pred             CCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCccccccccEEEcccCCcc
Q 046467          104 FSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIFYKIVLMLSAGV  170 (183)
Q Consensus       104 ~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~~~  170 (183)
                      |-++++|+.+++..|. ++ .||...+....|+.|+|.+|.++..--.++.-++.|+.|||+.|.++
T Consensus        98 f~nl~nLq~v~l~~N~-Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is  162 (873)
T KOG4194|consen   98 FYNLPNLQEVNLNKNE-LT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLIS  162 (873)
T ss_pred             HhcCCcceeeeeccch-hh-hcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhh
Confidence            4566666666666666 65 46655555555655555555555333344555555555555555554

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=96.90  E-value=9.1e-05  Score=55.53  Aligned_cols=82  Identities=18%  Similarity=0.226  Sum_probs=53.5

Q ss_pred             CCEEEEEeCccCCCcccCCcCCccCCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCccccccc
Q 046467           80 GSVIGVSLLWYENDNIIGELGRFKFSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIF  159 (183)
Q Consensus        80 ~~v~~L~l~~l~~g~l~~~~g~l~~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L  159 (183)
                      .+++.+++++...-.+|..+    -..++.++.|++++|. ++ .+|.++..++.|+.|+++.|.|. ..|..+..+.+|
T Consensus        53 ~el~~i~ls~N~fk~fp~kf----t~kf~t~t~lNl~~ne-is-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l  125 (177)
T KOG4579|consen   53 YELTKISLSDNGFKKFPKKF----TIKFPTATTLNLANNE-IS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKL  125 (177)
T ss_pred             ceEEEEecccchhhhCCHHH----hhccchhhhhhcchhh-hh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhH
Confidence            35666777654334444331    1244567777788887 77 57777878888888888888777 566666667777


Q ss_pred             cEEEcccCC
Q 046467          160 YKIVLMLSA  168 (183)
Q Consensus       160 ~~L~L~~n~  168 (183)
                      .+|+...|.
T Consensus       126 ~~Lds~~na  134 (177)
T KOG4579|consen  126 DMLDSPENA  134 (177)
T ss_pred             HHhcCCCCc
Confidence            777655443

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=96.87  E-value=0.00014  Score=54.54  Aligned_cols=66  Identities=18%  Similarity=0.205  Sum_probs=56.6

Q ss_pred             CCCCCCCcEEeccCCCCccccCCcccc-CCCCCCEEEccCCccccCCCCCccccccccEEEcccCCcccc
Q 046467          104 FSCFPNLRSFKIRSNYLLSGSIPSEIT-VLSTIRTLELTSNNLTGKLPNFTVTYYIFYKIVLMLSAGVCF  172 (183)
Q Consensus       104 ~~~l~~L~~L~ls~N~~l~G~iP~~~~-~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~~~~~  172 (183)
                      +....+|+.+++++|. |. .+|+.+. ..+.+++|++++|.++ .+|.++..++.|+.|+++.|.+.-+
T Consensus        49 l~~~~el~~i~ls~N~-fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~~~  115 (177)
T KOG4579|consen   49 LSKGYELTKISLSDNG-FK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLNAE  115 (177)
T ss_pred             HhCCceEEEEecccch-hh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccccc
Confidence            4556688889999999 98 5777664 4568999999999999 7999999999999999999998755

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=96.83  E-value=0.00042  Score=57.08  Aligned_cols=64  Identities=14%  Similarity=0.191  Sum_probs=29.2

Q ss_pred             CCCCCcEEeccCCCCcccc----CCccccCCCCCCEEEccCCccccC----CCCCccccccccEEEcccCCcc
Q 046467          106 CFPNLRSFKIRSNYLLSGS----IPSEITVLSTIRTLELTSNNLTGK----LPNFTVTYYIFYKIVLMLSAGV  170 (183)
Q Consensus       106 ~l~~L~~L~ls~N~~l~G~----iP~~~~~l~~L~~L~Ls~N~l~G~----iP~~l~~l~~L~~L~L~~n~~~  170 (183)
                      .+.+|+.|++++|. +++.    ++..+..++.|++|++++|.+++.    ++..+.++++|+.|++++|++.
T Consensus       163 ~~~~L~~L~l~~n~-l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~  234 (319)
T cd00116         163 ANRDLKELNLANNG-IGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLT  234 (319)
T ss_pred             hCCCcCEEECcCCC-CchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCc
Confidence            33445555555555 5421    222333344555555555555422    1222334455555555555443

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=96.80  E-value=0.00064  Score=64.60  Aligned_cols=63  Identities=19%  Similarity=0.234  Sum_probs=56.6

Q ss_pred             CCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCccccccccEEEcccCC
Q 046467          104 FSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIFYKIVLMLSA  168 (183)
Q Consensus       104 ~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~  168 (183)
                      ++.|-+||+|+++... ++ .+|..+++++.|.+|++..+.....+|.-...+++|++|.+....
T Consensus       591 I~~Li~LryL~L~~t~-I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~  653 (889)
T KOG4658|consen  591 IGELVHLRYLDLSDTG-IS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA  653 (889)
T ss_pred             HhhhhhhhcccccCCC-cc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccc
Confidence            8889999999999999 88 799999999999999999998777777766779999999997665

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=96.55  E-value=0.00067  Score=58.12  Aligned_cols=62  Identities=24%  Similarity=0.406  Sum_probs=52.1

Q ss_pred             CCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCccccccccEEEcccCC
Q 046467          104 FSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIFYKIVLMLSA  168 (183)
Q Consensus       104 ~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~  168 (183)
                      +..++.|+.|++++|+ ++ .+|...+.++.|+.|++++|+++ .+|..+.....|+.+.+..|+
T Consensus       159 ~~~l~~L~~L~l~~N~-l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~  220 (394)
T COG4886         159 LRNLPNLKNLDLSFND-LS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNS  220 (394)
T ss_pred             hhccccccccccCCch-hh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCc
Confidence            6788899999999999 88 67877778888999999999998 788877677778888888884

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=96.45  E-value=0.0073  Score=56.77  Aligned_cols=60  Identities=23%  Similarity=0.242  Sum_probs=35.1

Q ss_pred             CCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCC---Ccc--------------ccccccEEEcccCCc
Q 046467          107 FPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPN---FTV--------------TYYIFYKIVLMLSAG  169 (183)
Q Consensus       107 l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~---~l~--------------~l~~L~~L~L~~n~~  169 (183)
                      +++|++|++++|+ ++ .+|..   .++|+.|++++|.++ .+|.   .+.              ..++|+.|+|++|++
T Consensus       241 p~~Lk~LdLs~N~-Lt-sLP~l---p~sL~~L~Ls~N~L~-~Lp~lp~~L~~L~Ls~N~Lt~LP~~p~~L~~LdLS~N~L  314 (788)
T PRK15387        241 PPELRTLEVSGNQ-LT-SLPVL---PPGLLELSIFSNPLT-HLPALPSGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQL  314 (788)
T ss_pred             CCCCcEEEecCCc-cC-cccCc---ccccceeeccCCchh-hhhhchhhcCEEECcCCccccccccccccceeECCCCcc
Confidence            4677888888887 77 45643   244555555555554 2222   111              136777788877777


Q ss_pred             ccc
Q 046467          170 VCF  172 (183)
Q Consensus       170 ~~~  172 (183)
                      .+.
T Consensus       315 ~~L  317 (788)
T PRK15387        315 ASL  317 (788)
T ss_pred             ccC
Confidence            754

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=96.40  E-value=0.001  Score=55.90  Aligned_cols=37  Identities=24%  Similarity=0.492  Sum_probs=15.4

Q ss_pred             CCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccc
Q 046467          107 FPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLT  146 (183)
Q Consensus       107 l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~  146 (183)
                      +++++.|++|.|. +. .+ .++..+.+|+.||||+|.++
T Consensus       306 ~Pkir~L~lS~N~-i~-~v-~nLa~L~~L~~LDLS~N~Ls  342 (490)
T KOG1259|consen  306 APKLRRLILSQNR-IR-TV-QNLAELPQLQLLDLSGNLLA  342 (490)
T ss_pred             ccceeEEeccccc-ee-ee-hhhhhcccceEeecccchhH
Confidence            3344444444444 33 11 12344444444444444443

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.36  E-value=0.0013  Score=33.24  Aligned_cols=22  Identities=41%  Similarity=0.609  Sum_probs=18.5

Q ss_pred             CCcEEeccCCCCccccCCccccCC
Q 046467          109 NLRSFKIRSNYLLSGSIPSEITVL  132 (183)
Q Consensus       109 ~L~~L~ls~N~~l~G~iP~~~~~l  132 (183)
                      +|++||+++|+ ++ .||++|++|
T Consensus         1 ~L~~Ldls~n~-l~-~ip~~~~~l   22 (22)
T PF00560_consen    1 NLEYLDLSGNN-LT-SIPSSFSNL   22 (22)
T ss_dssp             TESEEEETSSE-ES-EEGTTTTT-
T ss_pred             CccEEECCCCc-CE-eCChhhcCC
Confidence            58999999999 99 899887654

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=96.27  E-value=0.0016  Score=54.73  Aligned_cols=63  Identities=13%  Similarity=0.175  Sum_probs=54.8

Q ss_pred             CCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCccccccccEEEcccCCcc
Q 046467          104 FSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIFYKIVLMLSAGV  170 (183)
Q Consensus       104 ~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~~~  170 (183)
                      +.....|+.+|||+|. ++ .|.++..-.++++.|++|+|.+. .+- .+..+++|+.|+|+.|-++
T Consensus       280 ~dTWq~LtelDLS~N~-I~-~iDESvKL~Pkir~L~lS~N~i~-~v~-nLa~L~~L~~LDLS~N~Ls  342 (490)
T KOG1259|consen  280 ADTWQELTELDLSGNL-IT-QIDESVKLAPKLRRLILSQNRIR-TVQ-NLAELPQLQLLDLSGNLLA  342 (490)
T ss_pred             cchHhhhhhccccccc-hh-hhhhhhhhccceeEEecccccee-eeh-hhhhcccceEeecccchhH
Confidence            5566789999999999 88 68888888999999999999997 344 4889999999999999876

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.20  E-value=0.003  Score=51.56  Aligned_cols=64  Identities=16%  Similarity=0.233  Sum_probs=50.1

Q ss_pred             CCCCCCCcEEeccCC--CCccccCCccccCCCCCCEEEccCCccccCCCCCcc---ccccccEEEcccCCcc
Q 046467          104 FSCFPNLRSFKIRSN--YLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTV---TYYIFYKIVLMLSAGV  170 (183)
Q Consensus       104 ~~~l~~L~~L~ls~N--~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~---~l~~L~~L~L~~n~~~  170 (183)
                      +..|++|+.|.++.|  + .++.++.-...+++|++|+++.|++.  +++.+.   .+.+|..|+++.+.-.
T Consensus        61 ~P~Lp~LkkL~lsdn~~~-~~~~l~vl~e~~P~l~~l~ls~Nki~--~lstl~pl~~l~nL~~Ldl~n~~~~  129 (260)
T KOG2739|consen   61 FPKLPKLKKLELSDNYRR-VSGGLEVLAEKAPNLKVLNLSGNKIK--DLSTLRPLKELENLKSLDLFNCSVT  129 (260)
T ss_pred             CCCcchhhhhcccCCccc-ccccceehhhhCCceeEEeecCCccc--cccccchhhhhcchhhhhcccCCcc
Confidence            677889999999999  6 77777777777899999999999997  355444   5667778887766543

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=95.98  E-value=0.0013  Score=59.16  Aligned_cols=59  Identities=22%  Similarity=0.305  Sum_probs=47.4

Q ss_pred             CcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCccccccccEEEcccCCccc
Q 046467          110 LRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIFYKIVLMLSAGVC  171 (183)
Q Consensus       110 L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~~~~  171 (183)
                      |+.|-+++|+ ++ .+|++++.+..|..||.+.|++. .+|++++.+.+|+.|++..|++.=
T Consensus       145 Lkvli~sNNk-l~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~~  203 (722)
T KOG0532|consen  145 LKVLIVSNNK-LT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLED  203 (722)
T ss_pred             ceeEEEecCc-cc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhhh
Confidence            6777777777 66 68888887788888888888887 688888888888888888888763

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=95.81  E-value=0.016  Score=46.10  Aligned_cols=64  Identities=19%  Similarity=0.312  Sum_probs=49.8

Q ss_pred             CCCCCCCcEEeccCCCCccccCCcccc-CCCCCCEEEccCCccccCCC--CCccccccccEEEcccCCcc
Q 046467          104 FSCFPNLRSFKIRSNYLLSGSIPSEIT-VLSTIRTLELTSNNLTGKLP--NFTVTYYIFYKIVLMLSAGV  170 (183)
Q Consensus       104 ~~~l~~L~~L~ls~N~~l~G~iP~~~~-~l~~L~~L~Ls~N~l~G~iP--~~l~~l~~L~~L~L~~n~~~  170 (183)
                      +..+++|+.|.+++|+ ++- |-+.+. -+..|+.|.|.+|++. .+-  ..+..+|+|++|.+-.|+..
T Consensus        60 lp~l~rL~tLll~nNr-It~-I~p~L~~~~p~l~~L~LtnNsi~-~l~dl~pLa~~p~L~~Ltll~Npv~  126 (233)
T KOG1644|consen   60 LPHLPRLHTLLLNNNR-ITR-IDPDLDTFLPNLKTLILTNNSIQ-ELGDLDPLASCPKLEYLTLLGNPVE  126 (233)
T ss_pred             CCCccccceEEecCCc-cee-eccchhhhccccceEEecCcchh-hhhhcchhccCCccceeeecCCchh
Confidence            6788999999999999 985 444444 4577999999999885 222  23778999999999888754

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=95.79  E-value=0.0062  Score=52.94  Aligned_cols=73  Identities=16%  Similarity=0.189  Sum_probs=44.8

Q ss_pred             CCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCccccccccEEEcccCCcccccC--Ccccccc
Q 046467          104 FSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIFYKIVLMLSAGVCFYN--AEEVCAV  181 (183)
Q Consensus       104 ~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~~~~~~~--~e~~~~~  181 (183)
                      +..+++|++|++++|. ++...+  +..++.|+.|++++|.++ .++ .+..+++|+.++++.|.+.-.-+  .|..+.+
T Consensus       114 l~~~~~L~~L~ls~N~-I~~i~~--l~~l~~L~~L~l~~N~i~-~~~-~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l  188 (414)
T KOG0531|consen  114 LSSLVNLQVLDLSFNK-ITKLEG--LSTLTLLKELNLSGNLIS-DIS-GLESLKSLKLLDLSYNRIVDIENDELSELISL  188 (414)
T ss_pred             hhhhhcchheeccccc-cccccc--hhhccchhhheeccCcch-hcc-CCccchhhhcccCCcchhhhhhhhhhhhccch
Confidence            3456777777777777 664322  445556777777777776 232 35557777777777777665444  3444443

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=95.48  E-value=0.0045  Score=53.82  Aligned_cols=69  Identities=17%  Similarity=0.171  Sum_probs=54.3

Q ss_pred             CCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCccccccccEEEcccCCcccccCCc
Q 046467          104 FSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIFYKIVLMLSAGVCFYNAE  176 (183)
Q Consensus       104 ~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~~~~~~~~e  176 (183)
                      +..+++|+.+++.+|. +.. |...+..+.+|++|++++|.++...+  +..++.|+.|++++|.+..+-..+
T Consensus        91 l~~~~~l~~l~l~~n~-i~~-i~~~l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~l~~N~i~~~~~~~  159 (414)
T KOG0531|consen   91 LSKLKSLEALDLYDNK-IEK-IENLLSSLVNLQVLDLSFNKITKLEG--LSTLTLLKELNLSGNLISDISGLE  159 (414)
T ss_pred             cccccceeeeeccccc-hhh-cccchhhhhcchheeccccccccccc--hhhccchhhheeccCcchhccCCc
Confidence            5677889999999999 884 44447789999999999999985433  677778999999999988554333

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=95.11  E-value=0.003  Score=58.48  Aligned_cols=68  Identities=21%  Similarity=0.317  Sum_probs=41.6

Q ss_pred             CCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCC-ccccccccEEEcccCCcccccCCc
Q 046467          104 FSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNF-TVTYYIFYKIVLMLSAGVCFYNAE  176 (183)
Q Consensus       104 ~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~-l~~l~~L~~L~L~~n~~~~~~~~e  176 (183)
                      +--++.|+.|||+.|+ |+..  +.+..|.+|++|||++|.++ .+|.- ...+. |+.|+|++|.+.--.+.|
T Consensus       183 Lqll~ale~LnLshNk-~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~lrnN~l~tL~gie  251 (1096)
T KOG1859|consen  183 LQLLPALESLNLSHNK-FTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLLNLRNNALTTLRGIE  251 (1096)
T ss_pred             HHHHHHhhhhccchhh-hhhh--HHHHhcccccccccccchhc-cccccchhhhh-heeeeecccHHHhhhhHH
Confidence            3345677788888888 7632  26777888888888888887 56641 11222 555555555544433333

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=94.67  E-value=0.0023  Score=59.28  Aligned_cols=66  Identities=20%  Similarity=0.276  Sum_probs=37.5

Q ss_pred             CCCCCCCcEEeccCCCCccccCCc----------------------cccCCCCCCEEEccCCccccCCC-CCcccccccc
Q 046467          104 FSCFPNLRSFKIRSNYLLSGSIPS----------------------EITVLSTIRTLELTSNNLTGKLP-NFTVTYYIFY  160 (183)
Q Consensus       104 ~~~l~~L~~L~ls~N~~l~G~iP~----------------------~~~~l~~L~~L~Ls~N~l~G~iP-~~l~~l~~L~  160 (183)
                      +..+++|+.|||+.|. +. .+|.                      .+.++++|+.||+++|-+.+.-- ..+..+..|+
T Consensus       205 Lr~l~~LkhLDlsyN~-L~-~vp~l~~~gc~L~~L~lrnN~l~tL~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~  282 (1096)
T KOG1859|consen  205 LRRLPKLKHLDLSYNC-LR-HVPQLSMVGCKLQLLNLRNNALTTLRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLI  282 (1096)
T ss_pred             HHhcccccccccccch-hc-cccccchhhhhheeeeecccHHHhhhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHH
Confidence            5677888889999888 77 4553                      12334555555555555544321 1233455555


Q ss_pred             EEEcccCCccc
Q 046467          161 KIVLMLSAGVC  171 (183)
Q Consensus       161 ~L~L~~n~~~~  171 (183)
                      .|+|.+|++.|
T Consensus       283 ~L~LeGNPl~c  293 (1096)
T KOG1859|consen  283 VLWLEGNPLCC  293 (1096)
T ss_pred             HHhhcCCcccc
Confidence            55555555544

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=94.35  E-value=0.012  Score=51.43  Aligned_cols=47  Identities=21%  Similarity=0.163  Sum_probs=21.1

Q ss_pred             CCCCCEEEccCCccccCCC--CCccccccccEEEcccCCcc--cccCCcccc
Q 046467          132 LSTIRTLELTSNNLTGKLP--NFTVTYYIFYKIVLMLSAGV--CFYNAEEVC  179 (183)
Q Consensus       132 l~~L~~L~Ls~N~l~G~iP--~~l~~l~~L~~L~L~~n~~~--~~~~~e~~~  179 (183)
                      ++.|++|||++|++- ..|  ...+.++.|..|+++.+...  -++|.|+.|
T Consensus       245 ~~~L~~LdLs~N~li-~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~  295 (505)
T KOG3207|consen  245 LQTLQELDLSNNNLI-DFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLD  295 (505)
T ss_pred             hhHHhhccccCCccc-ccccccccccccchhhhhccccCcchhcCCCccchh
Confidence            444555555555543 122  23444445554444444444  234444443

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=94.31  E-value=0.026  Score=26.64  Aligned_cols=13  Identities=54%  Similarity=0.876  Sum_probs=5.6

Q ss_pred             CCCEEEccCCccc
Q 046467          134 TIRTLELTSNNLT  146 (183)
Q Consensus       134 ~L~~L~Ls~N~l~  146 (183)
                      +|++|+|++|+|+
T Consensus         2 ~L~~L~l~~n~L~   14 (17)
T PF13504_consen    2 NLRTLDLSNNRLT   14 (17)
T ss_dssp             T-SEEEETSS--S
T ss_pred             ccCEEECCCCCCC
Confidence            4555566655554

...

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=93.26  E-value=0.066  Score=43.80  Aligned_cols=62  Identities=18%  Similarity=0.157  Sum_probs=44.2

Q ss_pred             CCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCC--ccccCCCCCccccccccEEEcccCCcc
Q 046467          106 CFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSN--NLTGKLPNFTVTYYIFYKIVLMLSAGV  170 (183)
Q Consensus       106 ~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N--~l~G~iP~~l~~l~~L~~L~L~~n~~~  170 (183)
                      .+..|+.+++.+-. ++-.  ..+-.+++|++|.+|.|  ..++.++.-.-.+|+|++++|+.|...
T Consensus        41 ~~~~le~ls~~n~g-ltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~  104 (260)
T KOG2739|consen   41 EFVELELLSVINVG-LTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK  104 (260)
T ss_pred             cccchhhhhhhccc-eeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence            34445555554444 4411  22446789999999999  777777776777899999999999876

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=93.23  E-value=0.11  Score=41.36  Aligned_cols=60  Identities=15%  Similarity=0.155  Sum_probs=47.6

Q ss_pred             CCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCcc-ccccccEEEcccCCcc
Q 046467          107 FPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTV-TYYIFYKIVLMLSAGV  170 (183)
Q Consensus       107 l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~-~l~~L~~L~L~~n~~~  170 (183)
                      +.....+|+++|. +-  --+.+..+.+|++|.+++|+++ .|-+.+. -+++|+.|.|.+|++.
T Consensus        41 ~d~~d~iDLtdNd-l~--~l~~lp~l~rL~tLll~nNrIt-~I~p~L~~~~p~l~~L~LtnNsi~  101 (233)
T KOG1644|consen   41 LDQFDAIDLTDND-LR--KLDNLPHLPRLHTLLLNNNRIT-RIDPDLDTFLPNLKTLILTNNSIQ  101 (233)
T ss_pred             ccccceecccccc-hh--hcccCCCccccceEEecCCcce-eeccchhhhccccceEEecCcchh
Confidence            4567789999998 64  2245667899999999999999 4555566 4678999999999887

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=93.02  E-value=0.083  Score=27.32  Aligned_cols=19  Identities=37%  Similarity=0.649  Sum_probs=11.4

Q ss_pred             CCCCEEEccCCccccCCCCC
Q 046467          133 STIRTLELTSNNLTGKLPNF  152 (183)
Q Consensus       133 ~~L~~L~Ls~N~l~G~iP~~  152 (183)
                      ++|++|+|++|+++ .||+.
T Consensus         2 ~~L~~L~L~~N~l~-~lp~~   20 (26)
T smart00369        2 PNLRELDLSNNQLS-SLPPG   20 (26)
T ss_pred             CCCCEEECCCCcCC-cCCHH
Confidence            45666666666666 45543

>smart00370 LRR Leucine-rich repeats, outliers

Probab=93.02  E-value=0.083  Score=27.32  Aligned_cols=19  Identities=37%  Similarity=0.649  Sum_probs=11.4

Q ss_pred             CCCCEEEccCCccccCCCCC
Q 046467          133 STIRTLELTSNNLTGKLPNF  152 (183)
Q Consensus       133 ~~L~~L~Ls~N~l~G~iP~~  152 (183)
                      ++|++|+|++|+++ .||+.
T Consensus         2 ~~L~~L~L~~N~l~-~lp~~   20 (26)
T smart00370        2 PNLRELDLSNNQLS-SLPPG   20 (26)
T ss_pred             CCCCEEECCCCcCC-cCCHH
Confidence            45666666666666 45543

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.97  E-value=0.1  Score=44.01  Aligned_cols=67  Identities=18%  Similarity=0.131  Sum_probs=49.6

Q ss_pred             CCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCC-CCccccccccEEEcccCCccc
Q 046467          104 FSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLP-NFTVTYYIFYKIVLMLSAGVC  171 (183)
Q Consensus       104 ~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP-~~l~~l~~L~~L~L~~n~~~~  171 (183)
                      +.++++|+.|+++.|. ++..|-..-..+++|++|-|.+..+.-+-- ..+..+|.++.|.++.|++.=
T Consensus        93 le~lP~l~~LNls~N~-L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq  160 (418)
T KOG2982|consen   93 LEQLPALTTLNLSCNS-LSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQ  160 (418)
T ss_pred             HhcCccceEeeccCCc-CCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhh
Confidence            5688889999999998 886665443567888888888776654433 345678888888888887763

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=91.47  E-value=0.061  Score=50.15  Aligned_cols=62  Identities=19%  Similarity=0.249  Sum_probs=31.2

Q ss_pred             CCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCcccc-CCCCCccccccccEEEcccCC
Q 046467          104 FSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTG-KLPNFTVTYYIFYKIVLMLSA  168 (183)
Q Consensus       104 ~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G-~iP~~l~~l~~L~~L~L~~n~  168 (183)
                      ..++++|.+||+|+.+ ++- + ..++++++|+.|.+-+=.|.- ..=..+.+|++|+.||+|...
T Consensus       169 c~sFpNL~sLDIS~Tn-I~n-l-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~  231 (699)
T KOG3665|consen  169 CASFPNLRSLDISGTN-ISN-L-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDK  231 (699)
T ss_pred             hhccCccceeecCCCC-ccC-c-HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccc
Confidence            3455566666666655 442 1 335555666655554433321 111245566666666665443

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=90.45  E-value=0.15  Score=44.88  Aligned_cols=64  Identities=16%  Similarity=0.219  Sum_probs=43.8

Q ss_pred             CCCCCCcEEeccCCCCccccCC--ccccCCCCCCEEEccCCccccC-CCCC-----ccccccccEEEcccCCcc
Q 046467          105 SCFPNLRSFKIRSNYLLSGSIP--SEITVLSTIRTLELTSNNLTGK-LPNF-----TVTYYIFYKIVLMLSAGV  170 (183)
Q Consensus       105 ~~l~~L~~L~ls~N~~l~G~iP--~~~~~l~~L~~L~Ls~N~l~G~-iP~~-----l~~l~~L~~L~L~~n~~~  170 (183)
                      ..+..|+.|||++|+ +- ..+  ...+.++.|..|+++.+.+..- +|+.     ...+++|++|++.+|+.+
T Consensus       243 ~i~~~L~~LdLs~N~-li-~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~  314 (505)
T KOG3207|consen  243 KILQTLQELDLSNNN-LI-DFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIR  314 (505)
T ss_pred             hhhhHHhhccccCCc-cc-ccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccc
Confidence            345678888888888 54 234  4467788888888888776532 2332     356788888888888874

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=88.57  E-value=0.038  Score=28.14  Aligned_cols=15  Identities=33%  Similarity=0.658  Sum_probs=6.7

Q ss_pred             CCCCEEEccCCcccc
Q 046467          133 STIRTLELTSNNLTG  147 (183)
Q Consensus       133 ~~L~~L~Ls~N~l~G  147 (183)
                      ++|++|+|++|.+++
T Consensus         2 ~~L~~L~l~~n~i~~   16 (24)
T PF13516_consen    2 PNLETLDLSNNQITD   16 (24)
T ss_dssp             TT-SEEE-TSSBEHH
T ss_pred             CCCCEEEccCCcCCH
Confidence            345555555555543

...

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=87.82  E-value=0.2  Score=46.74  Aligned_cols=90  Identities=12%  Similarity=0.086  Sum_probs=51.9

Q ss_pred             ceeCCCCCEEEEEeCccCCCcccCCcCCccCCCCCCCcEEeccCCCCccc-cCCccccCCCCCCEEEccCCccccCC--C
Q 046467           74 ISCNSAGSVIGVSLLWYENDNIIGELGRFKFSCFPNLRSFKIRSNYLLSG-SIPSEITVLSTIRTLELTSNNLTGKL--P  150 (183)
Q Consensus        74 v~C~~~~~v~~L~l~~l~~g~l~~~~g~l~~~~l~~L~~L~ls~N~~l~G-~iP~~~~~l~~L~~L~Ls~N~l~G~i--P  150 (183)
                      ..|.+..++..||+++-+-..+   -|   +++|++|+.|.+.+=. |.- ..-..+.+|++|+.||+|+......-  .
T Consensus       167 ~lc~sFpNL~sLDIS~TnI~nl---~G---IS~LknLq~L~mrnLe-~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii  239 (699)
T KOG3665|consen  167 QLCASFPNLRSLDISGTNISNL---SG---ISRLKNLQVLSMRNLE-FESYQDLIDLFNLKKLRVLDISRDKNNDDTKII  239 (699)
T ss_pred             HHhhccCccceeecCCCCccCc---HH---HhccccHHHHhccCCC-CCchhhHHHHhcccCCCeeeccccccccchHHH
Confidence            4455666677777664311111   11   6777788877766655 331 22235677888888888887654321  1


Q ss_pred             C----CccccccccEEEcccCCcc
Q 046467          151 N----FTVTYYIFYKIVLMLSAGV  170 (183)
Q Consensus       151 ~----~l~~l~~L~~L~L~~n~~~  170 (183)
                      .    .-..+|+|+.||.+.+...
T Consensus       240 ~qYlec~~~LpeLrfLDcSgTdi~  263 (699)
T KOG3665|consen  240 EQYLECGMVLPELRFLDCSGTDIN  263 (699)
T ss_pred             HHHHHhcccCccccEEecCCcchh
Confidence            1    1123778888887766544

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=87.49  E-value=0.012  Score=47.91  Aligned_cols=83  Identities=14%  Similarity=0.020  Sum_probs=64.8

Q ss_pred             CCEEEEEeCccCCCcccCCcCCccCCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCccccccc
Q 046467           80 GSVIGVSLLWYENDNIIGELGRFKFSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIF  159 (183)
Q Consensus        80 ~~v~~L~l~~l~~g~l~~~~g~l~~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L  159 (183)
                      .+++-||++....-.+...     +..+++|..|+++.|. +. .+|..+++...+..+++..|+.+ ..|.+.+..+.+
T Consensus        42 kr~tvld~~s~r~vn~~~n-----~s~~t~~~rl~~sknq-~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~  113 (326)
T KOG0473|consen   42 KRVTVLDLSSNRLVNLGKN-----FSILTRLVRLDLSKNQ-IK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHP  113 (326)
T ss_pred             ceeeeehhhhhHHHhhccc-----hHHHHHHHHHhccHhh-Hh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCc
Confidence            4677777762211111111     5667888999999998 76 78999999999999999999988 799999999999


Q ss_pred             cEEEcccCCcc
Q 046467          160 YKIVLMLSAGV  170 (183)
Q Consensus       160 ~~L~L~~n~~~  170 (183)
                      +++++-.|.+.
T Consensus       114 k~~e~k~~~~~  124 (326)
T KOG0473|consen  114 KKNEQKKTEFF  124 (326)
T ss_pred             chhhhccCcch
Confidence            99999988865

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=85.05  E-value=0.4  Score=40.60  Aligned_cols=64  Identities=17%  Similarity=0.277  Sum_probs=47.9

Q ss_pred             CCCCCcEEeccCCCCcccc--CCccccCCCCCCEEEccCCccccCCCCCccccccccEEEcccCCcc
Q 046467          106 CFPNLRSFKIRSNYLLSGS--IPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIFYKIVLMLSAGV  170 (183)
Q Consensus       106 ~l~~L~~L~ls~N~~l~G~--iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~~~  170 (183)
                      ..++++.+||.+|. ++..  |-.-+.+++.|++|+|+.|.++..|-..-....+|++|-|.+.-++
T Consensus        69 ~~~~v~elDL~~N~-iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~  134 (418)
T KOG2982|consen   69 SVTDVKELDLTGNL-ISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLS  134 (418)
T ss_pred             Hhhhhhhhhcccch-hccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCC
Confidence            46788999999999 7632  2223568999999999999999777654456678888887655443

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=84.91  E-value=0.052  Score=45.39  Aligned_cols=58  Identities=19%  Similarity=0.221  Sum_probs=35.2

Q ss_pred             CCCCCCCcEEeccCCCCccccCCc--cccCCCCCCEEEccCCccccCCCCC-----ccccccccEEE
Q 046467          104 FSCFPNLRSFKIRSNYLLSGSIPS--EITVLSTIRTLELTSNNLTGKLPNF-----TVTYYIFYKIV  163 (183)
Q Consensus       104 ~~~l~~L~~L~ls~N~~l~G~iP~--~~~~l~~L~~L~Ls~N~l~G~iP~~-----l~~l~~L~~L~  163 (183)
                      +..+++|+.|+|..|. +.. +.+  -+.++++|+.|.|..|.-.|.-+..     +.-+|+|+.||
T Consensus        59 l~rCtrLkElYLRkN~-I~s-ldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   59 LQRCTRLKELYLRKNC-IES-LDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             HHHHHHHHHHHHHhcc-ccc-HHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence            5566677777777776 442 221  2456666777777777777666643     33466666665

>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily

Probab=84.57  E-value=0.87  Score=23.92  Aligned_cols=15  Identities=27%  Similarity=0.645  Sum_probs=10.4

Q ss_pred             CCCCCEEEccCCccc
Q 046467          132 LSTIRTLELTSNNLT  146 (183)
Q Consensus       132 l~~L~~L~Ls~N~l~  146 (183)
                      +++|++|++++|+++
T Consensus         1 L~~L~~L~L~~NkI~   15 (26)
T smart00365        1 LTNLEELDLSQNKIK   15 (26)
T ss_pred             CCccCEEECCCCccc
Confidence            356777777777764

>smart00364 LRR_BAC Leucine-rich repeats, bacterial type

Probab=83.53  E-value=0.82  Score=24.08  Aligned_cols=17  Identities=35%  Similarity=0.776  Sum_probs=11.5

Q ss_pred             CCCEEEccCCccccCCCC
Q 046467          134 TIRTLELTSNNLTGKLPN  151 (183)
Q Consensus       134 ~L~~L~Ls~N~l~G~iP~  151 (183)
                      .|++|++++|+|+ .+|+
T Consensus         3 ~L~~L~vs~N~Lt-~LPe   19 (26)
T smart00364        3 SLKELNVSNNQLT-SLPE   19 (26)
T ss_pred             ccceeecCCCccc-cCcc
Confidence            4677777777776 4554

>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type

Probab=80.20  E-value=1.5  Score=23.16  Aligned_cols=14  Identities=36%  Similarity=0.712  Sum_probs=9.2

Q ss_pred             CCCCEEEccCCccc
Q 046467          133 STIRTLELTSNNLT  146 (183)
Q Consensus       133 ~~L~~L~Ls~N~l~  146 (183)
                      +.|++|||++|.+.
T Consensus         2 ~~L~~LdL~~N~i~   15 (28)
T smart00368        2 PSLRELDLSNNKLG   15 (28)
T ss_pred             CccCEEECCCCCCC
Confidence            35677777777664

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	183
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-12
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	7e-05
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-04
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-04
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-11
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-06
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-06
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-06
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	7e-06
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-05
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-05
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	7e-05
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	7e-05
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	9e-05
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-04
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-04
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-04
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-04
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	9e-04
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-06
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-05
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-04
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	8e-04

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 63.7 bits (156), Expect = 1e-12
 Identities = 24/102 (23%), Positives = 39/102 (38%), Gaps = 13/102 (12%)

Query: 57  NWATTGNYTSDHCKWTGISCNSAGSVIGVSLLWYENDNIIG------ELGRFKFSCFPNL 110
           +W  T +    +  W G+ C++      V+ L     N+         L        P L
Sbjct: 26  SWLPTTDCC--NRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANL-----PYL 78

Query: 111 RSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNF 152
               I     L G IP  I  L+ +  L +T  N++G +P+F
Sbjct: 79  NFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDF 120

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 41.0 bits (97), Expect = 7e-05
 Identities = 9/44 (20%), Positives = 14/44 (31%), Gaps = 1/44 (2%)

Query: 109 NLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNF 152
           NL    +  N +L G            + + L  N+L   L   
Sbjct: 198 NLAFVDLSRN-MLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKV 240

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 40.6 bits (96), Expect = 1e-04
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 2/44 (4%)

Query: 108 PNLRSFKIRSNYLLSGSIPSEITVLSTIRT-LELTSNNLTGKLP 150
           PNL       N + SG+IP      S + T + ++ N LTGK+P
Sbjct: 149 PNLVGITFDGNRI-SGAIPDSYGSFSKLFTSMTISRNRLTGKIP 191

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 39.8 bits (94), Expect = 2e-04
 Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 12/69 (17%)

Query: 96  IGELGRFKFSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLP----- 150
           +G++G  K     NL    +R+N +  G++P  +T L  + +L ++ NNL G++P     
Sbjct: 237 LGKVGLSK-----NLNGLDLRNNRI-YGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNL 290

Query: 151 -NFTVTYYI 158
             F V+ Y 
Sbjct: 291 QRFDVSAYA 299

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 61.1 bits (149), Expect = 2e-11
 Identities = 17/120 (14%), Positives = 43/120 (35%), Gaps = 28/120 (23%)

Query: 44  EREALLA-----------TGWWVNNWATTGNYTSDHCKWTGISCNSAGSVIGVSLLWYEN 92
           E   L++             W         +   + C + G++C     V  + L    +
Sbjct: 13  EIHQLISFKDVLPDKNLLPDW---------SSNKNPCTFDGVTCRD-DKVTSIDLS---S 59

Query: 93  DNIIGELGRF--KFSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLP 150
             +                L S  + ++++ +GS+       +++ +L+L+ N+L+G + 
Sbjct: 60  KPLNVGFSAVSSSLLSLTGLESLFLSNSHI-NGSVS-GFKCSASLTSLDLSRNSLSGPVT 117

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 46.1 bits (110), Expect = 2e-06
 Identities = 18/45 (40%), Positives = 27/45 (60%), Gaps = 1/45 (2%)

Query: 107 FPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPN 151
              LR  K+  N +L G IP E+  + T+ TL L  N+LTG++P+
Sbjct: 441 LSKLRDLKLWLN-MLEGEIPQELMYVKTLETLILDFNDLTGEIPS 484

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 45.7 bits (109), Expect = 2e-06
 Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 1/57 (1%)

Query: 94  NIIGELGRFKFSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLP 150
              GE+  F       L    +  N+   G++P      S + +L L+SNN +G+LP
Sbjct: 280 KFTGEIPDFLSGACDTLTGLDLSGNHF-YGAVPPFFGSCSLLESLALSSNNFSGELP 335

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 44.5 bits (106), Expect = 6e-06
 Identities = 12/49 (24%), Positives = 20/49 (40%), Gaps = 1/49 (2%)

Query: 104 FSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNF 152
                 L+   I  N L SG     I+  + ++ L ++SN   G +P  
Sbjct: 219 LGDCSALQHLDISGNKL-SGDFSRAISTCTELKLLNISSNQFVGPIPPL 266

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 44.5 bits (106), Expect = 7e-06
 Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 1/43 (2%)

Query: 108 PNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLP 150
            NL   K+ +N   SG+IP+E+    ++  L+L +N   G +P
Sbjct: 514 ENLAILKLSNN-SFSGNIPAELGDCRSLIWLDLNTNLFNGTIP 555

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 43.4 bits (103), Expect = 2e-05
 Identities = 12/47 (25%), Positives = 26/47 (55%), Gaps = 1/47 (2%)

Query: 105 SCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPN 151
           +    L+   +++N   +G IP  ++  S + +L L+ N L+G +P+
Sbjct: 391 NPKNTLQELYLQNNGF-TGKIPPTLSNCSELVSLHLSFNYLSGTIPS 436

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 43.4 bits (103), Expect = 2e-05
 Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 3/61 (4%)

Query: 94  NIIGELGRFKFSCFPNLRSFKIRSNYLLSGSIPSEI--TVLSTIRTLELTSNNLTGKLPN 151
              GEL     +   +L +  + SN   SG I   +     +T++ L L +N  TGK+P 
Sbjct: 354 EFSGELPESLTNLSASLLTLDLSSN-NFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPP 412

Query: 152 F 152
            
Sbjct: 413 T 413

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 41.4 bits (98), Expect = 7e-05
 Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 1/43 (2%)

Query: 109 NLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPN 151
           NL    + +N L +G IP  I  L  +  L+L++N+ +G +P 
Sbjct: 491 NLNWISLSNNRL-TGEIPKWIGRLENLAILKLSNNSFSGNIPA 532

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 41.4 bits (98), Expect = 7e-05
 Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 1/45 (2%)

Query: 108 PNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNF 152
             L S  +  NYL SG+IPS +  LS +R L+L  N L G++P  
Sbjct: 418 SELVSLHLSFNYL-SGTIPSSLGSLSKLRDLKLWLNMLEGEIPQE 461

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 41.0 bits (97), Expect = 9e-05
 Identities = 16/88 (18%), Positives = 33/88 (37%), Gaps = 2/88 (2%)

Query: 63  NYTSDHCKWTGISCNSAGSVIGVSLLWYENDNIIGELGRFKFSCFPNLRSFKIRSNYLLS 122
           +   +  ++ GI       +   +     +    G       +   ++    +  N L S
Sbjct: 588 HGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNN-GSMMFLDMSYNML-S 645

Query: 123 GSIPSEITVLSTIRTLELTSNNLTGKLP 150
           G IP EI  +  +  L L  N+++G +P
Sbjct: 646 GYIPKEIGSMPYLFILNLGHNDISGSIP 673

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 41.0 bits (97), Expect = 1e-04
 Identities = 13/45 (28%), Positives = 26/45 (57%), Gaps = 1/45 (2%)

Query: 108 PNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNF 152
             L +  +  N L +G IPS ++  + +  + L++N LTG++P +
Sbjct: 466 KTLETLILDFNDL-TGEIPSGLSNCTNLNWISLSNNRLTGEIPKW 509

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 40.7 bits (96), Expect = 1e-04
 Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 3/49 (6%)

Query: 104 FSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNF 152
            S    L+   I SN    G IP     L +++ L L  N  TG++P+F
Sbjct: 243 ISTCTELKLLNISSNQF-VGPIPPLP--LKSLQYLSLAENKFTGEIPDF 288

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 40.7 bits (96), Expect = 1e-04
 Identities = 14/51 (27%), Positives = 22/51 (43%), Gaps = 2/51 (3%)

Query: 100 GRFKFSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLP 150
           G    S   NL    + SN   S  IP  +   S ++ L+++ N L+G   
Sbjct: 192 GDVDVSRCVNLEFLDVSSNNF-STGIPF-LGDCSALQHLDISGNKLSGDFS 240

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 40.3 bits (95), Expect = 2e-04
 Identities = 12/59 (20%), Positives = 25/59 (42%), Gaps = 5/59 (8%)

Query: 94  NIIGELGRFKFSCFPNLRSFKIRSNYLLSGSIPSEITV-LSTIRTLELTSNNLTGKLPN 151
             +G +         +L+   +  N   +G IP  ++    T+  L+L+ N+  G +P 
Sbjct: 258 QFVGPIPPLPLK---SLQYLSLAENKF-TGEIPDFLSGACDTLTGLDLSGNHFYGAVPP 312

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 38.4 bits (90), Expect = 9e-04
 Identities = 10/51 (19%), Positives = 21/51 (41%), Gaps = 3/51 (5%)

Query: 102 FKFSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNF 152
                   L+   I  N + SG +   ++    +  L+++SNN +  +P  
Sbjct: 172 VLSDGCGELKHLAISGNKI-SGDVD--VSRCVNLEFLDVSSNNFSTGIPFL 219

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 45.4 bits (108), Expect = 4e-06
 Identities = 27/135 (20%), Positives = 38/135 (28%), Gaps = 29/135 (21%)

Query: 23  SDATISVTTSAAGLLSSPIQLEREALLATGWWVN----NWATTGNYTSDHCKWT-GISCN 77
            DA + +  S              AL     W      NW+  G  T     W      +
Sbjct: 14  DDAIVPIKLSRTAEYIKD----YLALKE--IWDALNGKNWSQQGFGTQPGANWNFNKELD 67

Query: 78  SAGSVIGVSLLWYENDNIIGELGRFKFSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRT 137
             G+  GVSL            GR        +    +      SG +P  I  L+ +  
Sbjct: 68  MWGAQPGVSL---------NSNGR--------VTGLSLEGFGA-SGRVPDAIGQLTELEV 109

Query: 138 LELTSNNLTGKLPNF 152
           L L S+        F
Sbjct: 110 LALGSHGEKVNERLF 124

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 43.1 bits (102), Expect = 2e-05
 Identities = 12/49 (24%), Positives = 20/49 (40%)

Query: 104 FSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNF 152
                 ++   I  N L +  + + +  +  +  LE   N L GKLP F
Sbjct: 301 APVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAF 349

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 39.1 bits (91), Expect = 4e-04
 Identities = 17/106 (16%), Positives = 32/106 (30%), Gaps = 36/106 (33%)

Query: 51  TGWWVNNWATTGNYTSDHCKW---TGISCNSAGSVIGVSLLWYENDNIIGELGRFKFSCF 107
                 NW    N+  +   W    G+  ++ G V G+SL                    
Sbjct: 295 NTIHSLNW----NFNKELDMWGDQPGVDLDNNGRVTGLSL-------------------- 330

Query: 108 PNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFT 153
                    + +   G +P  I  L+ ++ L   +++ T     F 
Sbjct: 331 ---------AGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFG 367

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 38.5 bits (90), Expect = 8e-04
 Identities = 13/56 (23%), Positives = 25/56 (44%), Gaps = 2/56 (3%)

Query: 92  NDNIIGELGRFKFSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTG 147
             +    +    F CF  L+   + + +L    +PS +  LST++ L L++N    
Sbjct: 262 QKHYFFNISSNTFHCFSGLQELDLTATHL--SELPSGLVGLSTLKKLVLSANKFEN 315

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	183
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.79
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.75
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.74
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.69
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.56
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.44
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.4
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.36
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.33
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.27
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.26
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.22
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.21
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.19
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.19
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.18
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.18
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.17
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.15
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.15
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.11
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.1
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.1
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.09
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.09
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.09
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.07
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.07
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.06
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.06
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.03
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.03
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.02
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.02
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.0
3m19_A	251	Variable lymphocyte receptor A diversity region; a	98.99
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.99
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	98.99
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	98.98
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	98.97
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.96
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	98.95
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	98.95
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	98.94
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	98.93
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	98.92
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	98.91
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	98.9
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	98.9
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	98.9
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.88
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	98.88
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	98.88
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	98.87
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	98.87
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	98.86
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	98.86
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	98.85
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	98.85
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	98.84
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	98.83
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.83
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	98.83
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	98.82
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	98.82
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	98.82
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	98.81
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	98.8
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	98.8
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	98.79
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	98.79
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	98.78
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	98.77
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.76
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.75
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	98.75
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	98.75
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	98.75
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	98.75
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	98.75
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	98.74
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	98.74
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	98.74
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	98.74
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	98.74
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	98.73
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	98.72
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	98.7
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	98.7
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	98.7
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.7
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	98.7
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	98.68
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	98.65
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	98.65
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	98.64
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	98.63
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	98.6
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	98.6
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	98.59
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	98.58
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	98.55
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	98.54
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	98.54
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	98.54
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	98.52
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	98.52
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.52
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	98.5
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	98.48
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	98.48
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	98.48
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	98.47
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	98.47
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.46
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	98.46
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	98.45
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	98.44
1o6v_A	466	Internalin A; bacterial infection, extracellular r	98.42
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	98.41
1o6v_A	466	Internalin A; bacterial infection, extracellular r	98.38
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	98.37
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	98.33
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	98.32
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	98.32
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	98.26
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	98.21
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	98.17
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	98.15
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	98.08
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.07
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	98.0
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	97.95
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.87
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.71
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	97.67
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	97.64
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	97.42
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	97.41
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	97.24
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	97.06
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	96.94
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	96.93
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	96.79
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	96.77
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	96.41
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	96.38
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	96.26
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	95.92
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	95.46
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	94.85
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	93.59
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	92.56
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	92.27
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	92.1
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	89.0
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	87.71
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	86.77
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	86.22
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	81.12
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	80.13

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.79  E-value=1.4e-19  Score=149.16  Aligned_cols=135  Identities=19%  Similarity=0.251  Sum_probs=90.4

Q ss_pred             CCCCCchhHHHHHHHHcCCCCCCCCCCCCCC-CCCCCc--cccceeCCC---CCEEEEEeCccC-CC--cccCCcCCcc-
Q 046467           34 AGLLSSPIQLEREALLATGWWVNNWATTGNY-TSDHCK--WTGISCNSA---GSVIGVSLLWYE-ND--NIIGELGRFK-  103 (183)
Q Consensus        34 ~~~~~~~l~~~~~~l~~~~~~~~~~~~~~W~-~~~~C~--w~gv~C~~~---~~v~~L~l~~l~-~g--~l~~~~g~l~-  103 (183)
                      .++|..++.++|+++.+..      .+.+|. +.++|.  |.||.|+..   ++|+.|++.+.. .+  .+|..++.++ 
T Consensus         4 ~~~~~~aL~~~k~~~~~~~------~l~~W~~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~~l~~l~~   77 (313)
T 1ogq_A            4 NPQDKQALLQIKKDLGNPT------TLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPY   77 (313)
T ss_dssp             CHHHHHHHHHHHHHTTCCG------GGTTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTT
T ss_pred             CHHHHHHHHHHHHhcCCcc------cccCCCCCCCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCcccChhHhCCCC
Confidence            3445677888888774322      267884 668998  999999864   799999998553 44  5555432221 


Q ss_pred             -------------------CCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCccccccccEEEc
Q 046467          104 -------------------FSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIFYKIVL  164 (183)
Q Consensus       104 -------------------~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~L  164 (183)
                                         ++++++|++|++++|+ ++|.+|..+.++++|++|++++|.++|.+|..++++++|++|+|
T Consensus        78 L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~-l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L  156 (313)
T 1ogq_A           78 LNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTN-VSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITF  156 (313)
T ss_dssp             CSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEEC-CEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEEC
T ss_pred             CCeeeCCCCCcccccCChhHhcCCCCCEEECcCCe-eCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEEC
Confidence                               4556666666666666 66666666666666666666666666666666666666777777


Q ss_pred             ccCCcccccCC
Q 046467          165 MLSAGVCFYNA  175 (183)
Q Consensus       165 ~~n~~~~~~~~  175 (183)
                      ++|++.+.+|.
T Consensus       157 ~~N~l~~~~p~  167 (313)
T 1ogq_A          157 DGNRISGAIPD  167 (313)
T ss_dssp             CSSCCEEECCG
T ss_pred             cCCcccCcCCH
Confidence            66666666554

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.75  E-value=3.4e-19  Score=162.86  Aligned_cols=130  Identities=18%  Similarity=0.208  Sum_probs=103.5

Q ss_pred             CCchhHHHHHHHHcCCCCCCCCCCCCC-CCCCCCccccceeCCCCCEEEEEeCccC-CCc---ccCCcCCcc--------
Q 046467           37 LSSPIQLEREALLATGWWVNNWATTGN-YTSDHCKWTGISCNSAGSVIGVSLLWYE-NDN---IIGELGRFK--------  103 (183)
Q Consensus        37 ~~~~l~~~~~~l~~~~~~~~~~~~~~W-~~~~~C~w~gv~C~~~~~v~~L~l~~l~-~g~---l~~~~g~l~--------  103 (183)
                      |..++.++|+++.+     |. .+.+| .+.+||.|.||.|+ .++|+.|++.+.. .|.   +|+.++.+.        
T Consensus        13 ~~~all~~k~~~~~-----~~-~l~~W~~~~~~C~w~gv~C~-~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~~   85 (768)
T 3rgz_A           13 EIHQLISFKDVLPD-----KN-LLPDWSSNKNPCTFDGVTCR-DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLS   85 (768)
T ss_dssp             HHHHHHHHHTTCSC-----TT-SSTTCCTTSCGGGSTTEEEE-TTEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEECT
T ss_pred             HHHHHHHHHhhCCC-----cc-cccCCCCCCCCcCCcceEEC-CCcEEEEECCCCCcCCccCccChhHhccCcccccCCc
Confidence            44556666655532     23 48899 47899999999998 6899999998543 454   554443331        


Q ss_pred             ----------CCCCCCCcEEeccCCCCccccCCc--cccCCCCCCEEEccCCccccCCCCCc-cccccccEEEcccCCcc
Q 046467          104 ----------FSCFPNLRSFKIRSNYLLSGSIPS--EITVLSTIRTLELTSNNLTGKLPNFT-VTYYIFYKIVLMLSAGV  170 (183)
Q Consensus       104 ----------~~~l~~L~~L~ls~N~~l~G~iP~--~~~~l~~L~~L~Ls~N~l~G~iP~~l-~~l~~L~~L~L~~n~~~  170 (183)
                                ++++++|++|++++|. ++|.+|.  .++++++|++|++++|.++|.+|..+ .++++|++|+|++|++.
T Consensus        86 ~~~~~~l~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~  164 (768)
T 3rgz_A           86 NSHINGSVSGFKCSASLTSLDLSRNS-LSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSIS  164 (768)
T ss_dssp             TSCEEECCCCCCCCTTCCEEECCSSE-EEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCE
T ss_pred             CCCcCCCchhhccCCCCCEEECCCCc-CCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccC
Confidence                      7788999999999999 9999998  89999999999999999999999876 78888888888888887


Q ss_pred             cccC
Q 046467          171 CFYN  174 (183)
Q Consensus       171 ~~~~  174 (183)
                      +..|
T Consensus       165 ~~~~  168 (768)
T 3rgz_A          165 GANV  168 (768)
T ss_dssp             EETH
T ss_pred             CcCC
Confidence            6654

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.74  E-value=8.3e-19  Score=157.41  Aligned_cols=77  Identities=19%  Similarity=0.271  Sum_probs=53.3

Q ss_pred             CCchhHHHHHHHHcCCCCCCC---CCCCCCC-CCCCCcc---ccceeCCCCCEEEEEeCccC-CCcccCCcCCccCCCCC
Q 046467           37 LSSPIQLEREALLATGWWVNN---WATTGNY-TSDHCKW---TGISCNSAGSVIGVSLLWYE-NDNIIGELGRFKFSCFP  108 (183)
Q Consensus        37 ~~~~l~~~~~~l~~~~~~~~~---~~~~~W~-~~~~C~w---~gv~C~~~~~v~~L~l~~l~-~g~l~~~~g~l~~~~l~  108 (183)
                      |..||.++++++....|....   ....+|+ +.++|.|   .||.|+..++|++|++.+.+ .|.+|+.     +++++
T Consensus        31 d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~~~~c~w~~~~GV~C~~~~~V~~L~L~~~~l~g~lp~~-----l~~L~  105 (636)
T 4eco_A           31 DYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDA-----IGQLT  105 (636)
T ss_dssp             HHHHHHHHHHHTTGGGCCCCC------CCCCCSSCGGGTTCCTTEEECTTCCEEEEECTTSCCEEEECGG-----GGGCT
T ss_pred             HHHHHHHHHHHcCCCCcccCCcCCccCCCCCCCCCcccccCCCCeEEcCCCCEEEEEecCcccCCcCChH-----HhcCc
Confidence            556777777777665554211   1234784 6789999   99999988999999998554 5677766     55666


Q ss_pred             CCcEEeccCC
Q 046467          109 NLRSFKIRSN  118 (183)
Q Consensus       109 ~L~~L~ls~N  118 (183)
                      +|++|++++|
T Consensus       106 ~L~~L~Ls~N  115 (636)
T 4eco_A          106 ELEVLALGSH  115 (636)
T ss_dssp             TCCEEESCCG
T ss_pred             cceEEECcCC
Confidence            6666666655

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.69  E-value=1.1e-17  Score=155.40  Aligned_cols=129  Identities=13%  Similarity=0.179  Sum_probs=90.8

Q ss_pred             CCCchhHHHHHHHHcCCCCCCCCCCCC-CCCCCC--Ccc------------ccceeCCCCCEEEEEeCccC-CCcccCCc
Q 046467           36 LLSSPIQLEREALLATGWWVNNWATTG-NYTSDH--CKW------------TGISCNSAGSVIGVSLLWYE-NDNIIGEL   99 (183)
Q Consensus        36 ~~~~~l~~~~~~l~~~~~~~~~~~~~~-W~~~~~--C~w------------~gv~C~~~~~v~~L~l~~l~-~g~l~~~~   99 (183)
                      .|..+|.++|+++.+..     |...+ |...++  |.|            .||.|+..++|+.|+|.+.+ .|.+|+. 
T Consensus       269 ~d~~ALl~~k~~l~~~~-----W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~~~~V~~L~Ls~~~L~G~ip~~-  342 (876)
T 4ecn_A          269 KDYKALKAIWEALDGKN-----WRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDA-  342 (876)
T ss_dssp             HHHHHHHHHHHHTTGGG-----CCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECTTSCEEEEECTTTCCEEEECGG-
T ss_pred             HHHHHHHHHHHHcCCCC-----CCcCCCcccccCCccccccccccccccCcCceEecCCCCEEEEECccCCCCCcCchH-
Confidence            35567777777764432     22222 323455  999            99999988999999998654 5777766 


Q ss_pred             CCccCCCCCCCcEEec-cCCCCcccc------------------------------------------------------
Q 046467          100 GRFKFSCFPNLRSFKI-RSNYLLSGS------------------------------------------------------  124 (183)
Q Consensus       100 g~l~~~~l~~L~~L~l-s~N~~l~G~------------------------------------------------------  124 (183)
                          +++|++|++|+| ++|. ++|.                                                      
T Consensus       343 ----l~~L~~L~~LdLss~N~-lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~~i  417 (876)
T 4ecn_A          343 ----IGQLTELKVLSFGTHSE-TVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPI  417 (876)
T ss_dssp             ----GGGCTTCCEEESCCTTH-HHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSCCC
T ss_pred             ----HhccccceEeeeccccc-ccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCcccccc
Confidence                666777777777 5555 5544                                                      


Q ss_pred             ----------------------CCccccCCCCCCEEEccCCcccc-----------------CCCCCcc--ccccccEEE
Q 046467          125 ----------------------IPSEITVLSTIRTLELTSNNLTG-----------------KLPNFTV--TYYIFYKIV  163 (183)
Q Consensus       125 ----------------------iP~~~~~l~~L~~L~Ls~N~l~G-----------------~iP~~l~--~l~~L~~L~  163 (183)
                                            ||..++++++|++|+|++|+|+|                 .||++++  ++++|+.|+
T Consensus       418 ~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~  497 (876)
T 4ecn_A          418 KKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVE  497 (876)
T ss_dssp             CCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEE
T ss_pred             ccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEE
Confidence                                  67777777777777777777777                 3777776  777777777


Q ss_pred             cccCCcccccCC
Q 046467          164 LMLSAGVCFYNA  175 (183)
Q Consensus       164 L~~n~~~~~~~~  175 (183)
                      |++|++.+.+|.
T Consensus       498 Ls~N~l~~~iP~  509 (876)
T 4ecn_A          498 LYNCPNMTQLPD  509 (876)
T ss_dssp             EESCTTCCSCCG
T ss_pred             CcCCCCCccChH
Confidence            777777777773

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.56  E-value=1.1e-15  Score=126.88  Aligned_cols=132  Identities=11%  Similarity=0.055  Sum_probs=98.0

Q ss_pred             CCCCCchhHHHHHHHHcCCCCCCCCCCCCC-----CCCCCCccccceeC---------CCCCEEEEEeCccCCCcccCCc
Q 046467           34 AGLLSSPIQLEREALLATGWWVNNWATTGN-----YTSDHCKWTGISCN---------SAGSVIGVSLLWYENDNIIGEL   99 (183)
Q Consensus        34 ~~~~~~~l~~~~~~l~~~~~~~~~~~~~~W-----~~~~~C~w~gv~C~---------~~~~v~~L~l~~l~~g~l~~~~   99 (183)
                      ..++..++.++|..+......    ....|     ...++|.|.|+.|+         ...+++.|++.+.+-..+|.. 
T Consensus        25 ~~~~~~aLl~~k~~~~~~~~~----~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~~lp~~-   99 (328)
T 4fcg_A           25 LRPYHDVLSQWQRHYNADRNR----WHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLPQFPDQ-   99 (328)
T ss_dssp             CCCHHHHHHHHHHHHHHCCTT----HHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCSSCCSC-
T ss_pred             CchHHHHHHHHHHhccCCchh----hhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCCCchhcChh-
Confidence            345567888888887543211    14556     25688999999995         236899999986544566665 


Q ss_pred             CCccCCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCccccccccEEEcccCCcccccCCcc
Q 046467          100 GRFKFSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIFYKIVLMLSAGVCFYNAEE  177 (183)
Q Consensus       100 g~l~~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~~~~~~~~e~  177 (183)
                          +.++++|++|++++|. ++ .+|..++++++|++|++++|+++ .+|..++++++|++|+|++|+..+.+|.+.
T Consensus       100 ----l~~l~~L~~L~L~~n~-l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~  170 (328)
T 4fcg_A          100 ----AFRLSHLQHMTIDAAG-LM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPL  170 (328)
T ss_dssp             ----GGGGTTCSEEEEESSC-CC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCS
T ss_pred             ----hhhCCCCCEEECCCCC-cc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhH
Confidence                5567788888888888 87 78888888888888888888888 788888888888888888888877777653

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.44  E-value=1.2e-13  Score=126.19  Aligned_cols=91  Identities=24%  Similarity=0.307  Sum_probs=81.7

Q ss_pred             CEEEEEeCccC-CCcccCCcCCccCCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCccccccc
Q 046467           81 SVIGVSLLWYE-NDNIIGELGRFKFSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIF  159 (183)
Q Consensus        81 ~v~~L~l~~l~-~g~l~~~~g~l~~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L  159 (183)
                      .++.|++++.. .|.+|..     ++++++|+.|++++|+ ++|.||..++++++|++|||++|+++|.||..++++++|
T Consensus       633 ~L~~LdLs~N~l~g~ip~~-----l~~l~~L~~L~Ls~N~-l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L  706 (768)
T 3rgz_A          633 SMMFLDMSYNMLSGYIPKE-----IGSMPYLFILNLGHND-ISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTML  706 (768)
T ss_dssp             CCCEEECCSSCCBSCCCGG-----GGGCTTCCEEECCSSC-CCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCC
T ss_pred             cccEEECcCCcccccCCHH-----HhccccCCEEeCcCCc-cCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCC
Confidence            56678887543 5667766     7788999999999999 999999999999999999999999999999999999999


Q ss_pred             cEEEcccCCcccccCCcc
Q 046467          160 YKIVLMLSAGVCFYNAEE  177 (183)
Q Consensus       160 ~~L~L~~n~~~~~~~~e~  177 (183)
                      ++|+|++|+++|.+|.+.
T Consensus       707 ~~L~ls~N~l~g~iP~~~  724 (768)
T 3rgz_A          707 TEIDLSNNNLSGPIPEMG  724 (768)
T ss_dssp             SEEECCSSEEEEECCSSS
T ss_pred             CEEECcCCcccccCCCch
Confidence            999999999999999764

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.40  E-value=1e-12  Score=100.84  Aligned_cols=71  Identities=14%  Similarity=0.175  Sum_probs=55.7

Q ss_pred             CCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCccccccccEEEcccCCcccccCC
Q 046467          104 FSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIFYKIVLMLSAGVCFYNA  175 (183)
Q Consensus       104 ~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~~~~~~~~  175 (183)
                      +..+++|++|++++|+ +++..|..+..+++|++|+|++|++++.+|..+..+++|+.|+|++|++.|.++.
T Consensus        74 ~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l  144 (192)
T 1w8a_A           74 FEGASHIQELQLGENK-IKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHL  144 (192)
T ss_dssp             TTTCTTCCEEECCSCC-CCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGG
T ss_pred             cCCcccCCEEECCCCc-CCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcc
Confidence            6677778888888888 8877777777788888888888888887787788888888888888888776553

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.36  E-value=5.5e-12  Score=99.28  Aligned_cols=110  Identities=16%  Similarity=0.151  Sum_probs=67.6

Q ss_pred             CCCCCCCCCccccceeCCC----------CCEEEEEeCccC-CCcccCCcCCcc-------------------CCCCCCC
Q 046467           61 TGNYTSDHCKWTGISCNSA----------GSVIGVSLLWYE-NDNIIGELGRFK-------------------FSCFPNL  110 (183)
Q Consensus        61 ~~W~~~~~C~w~gv~C~~~----------~~v~~L~l~~l~-~g~l~~~~g~l~-------------------~~~l~~L  110 (183)
                      ..|.+...|.|.++.|...          ..++.|++.+.. .+..+..++.++                   +..+++|
T Consensus        11 ~~~~~~~~Cs~~~v~c~~~~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L   90 (229)
T 3e6j_A           11 AACPSQCSCSGTTVDCRSKRHASVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQL   90 (229)
T ss_dssp             CCCCTTCEEETTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             ccCCCCCEEeCCEeEccCCCcCccCCCCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCc
Confidence            4456788999999999742          245667766432 222222221111                   4566667


Q ss_pred             cEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCccccccccEEEcccCCcccc
Q 046467          111 RSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIFYKIVLMLSAGVCF  172 (183)
Q Consensus       111 ~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~~~~~  172 (183)
                      ++|++++|+ +++..+..+..+++|++|+|++|+++ .+|..+..+++|+.|+|++|++...
T Consensus        91 ~~L~Ls~N~-l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~  150 (229)
T 3e6j_A           91 TVLDLGTNQ-LTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSI  150 (229)
T ss_dssp             CEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCC
T ss_pred             CEEECCCCc-CCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCcc
Confidence            777777777 66544445566667777777777666 5666666666777777766666643

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.33  E-value=5.8e-12  Score=94.99  Aligned_cols=100  Identities=17%  Similarity=0.197  Sum_probs=77.0

Q ss_pred             CccccceeCC----------CCCEEEEEeCccCCCcc-cCCcCCccCCCCCCCcEEeccCCCCccccCCccccCCCCCCE
Q 046467           69 CKWTGISCNS----------AGSVIGVSLLWYENDNI-IGELGRFKFSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRT  137 (183)
Q Consensus        69 C~w~gv~C~~----------~~~v~~L~l~~l~~g~l-~~~~g~l~~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~  137 (183)
                      |.|..+.|..          ...++.|++.+..-..+ |..     +..+++|++|++++|+ +++..|..+..+++|++
T Consensus         9 C~~~~l~~s~n~l~~ip~~~~~~l~~L~L~~N~i~~~~~~~-----~~~l~~L~~L~Ls~N~-l~~l~~~~f~~l~~L~~   82 (170)
T 3g39_A            9 CSGTTVDCSGKSLASVPTGIPTTTQVLYLYDNQITKLEPGV-----FDRLTQLTRLDLDNNQ-LTVLPAGVFDKLTQLTQ   82 (170)
T ss_dssp             EETTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTT-----TTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCE
T ss_pred             cCCCEEEeCCCCcCccCccCCCCCcEEEcCCCcCCccChhh-----hcCcccCCEEECCCCC-cCccChhhccCCCCCCE
Confidence            4566666652          12456677764422222 222     7889999999999999 99766666799999999


Q ss_pred             EEccCCccccCCCCCccccccccEEEcccCCcccccC
Q 046467          138 LELTSNNLTGKLPNFTVTYYIFYKIVLMLSAGVCFYN  174 (183)
Q Consensus       138 L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~~~~~~~  174 (183)
                      |+|++|++++..|..+.++++|+.|+|++|++.|.++
T Consensus        83 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~  119 (170)
T 3g39_A           83 LSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS  119 (170)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred             EECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence            9999999997666679999999999999999998765

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.27  E-value=2.7e-11  Score=91.21  Aligned_cols=68  Identities=18%  Similarity=0.151  Sum_probs=32.5

Q ss_pred             CCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCccccccccEEEcccCCccccc
Q 046467          105 SCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIFYKIVLMLSAGVCFY  173 (183)
Q Consensus       105 ~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~~~~~~  173 (183)
                      ..+++|++|++++|. +++..+..+..+++|++|++++|++++..+..+.++++|+.|+|++|++.|.+
T Consensus        73 ~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~  140 (177)
T 2o6r_A           73 DKLTKLTILYLHENK-LQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC  140 (177)
T ss_dssp             TTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred             cCCCccCEEECCCCC-ccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccC
Confidence            344455555555555 55433333445555555555555554322222344555555555555555443

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.26  E-value=3.3e-11  Score=92.82  Aligned_cols=67  Identities=15%  Similarity=0.153  Sum_probs=39.8

Q ss_pred             CCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCccccccccEEEcccCCccc
Q 046467          104 FSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIFYKIVLMLSAGVC  171 (183)
Q Consensus       104 ~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~~~~  171 (183)
                      +..+++|++|++++|+ +++..+..+..+++|++|++++|++++..|..+.++++|+.|+|++|++.+
T Consensus        72 ~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~  138 (208)
T 2o6s_A           72 FNKLTSLTYLNLSTNQ-LQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKS  138 (208)
T ss_dssp             TTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred             cCCCCCcCEEECCCCc-CCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccce
Confidence            3455666666666666 664434445666666666666666665444445666666666666666654

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.22  E-value=4.8e-11  Score=95.69  Aligned_cols=66  Identities=18%  Similarity=0.096  Sum_probs=30.1

Q ss_pred             CCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCccccccccEEEcccCCcc
Q 046467          104 FSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIFYKIVLMLSAGV  170 (183)
Q Consensus       104 ~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~~~  170 (183)
                      +.++++|++|++++|. ++...+..+.++++|++|++++|++++..+..+.++++|+.|+|++|++.
T Consensus        57 ~~~l~~L~~L~l~~n~-l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  122 (270)
T 2o6q_A           57 FHRLTKLRLLYLNDNK-LQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLK  122 (270)
T ss_dssp             SSSCTTCCEEECCSSC-CSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCC
T ss_pred             hcCCCCCCEEECCCCc-cCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccC
Confidence            4445555555555555 54322222344555555555555544333333344444444444444443

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.21  E-value=5.8e-11  Score=91.29  Aligned_cols=69  Identities=17%  Similarity=0.174  Sum_probs=45.0

Q ss_pred             CCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCccccccccEEEcccCCccccc
Q 046467          104 FSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIFYKIVLMLSAGVCFY  173 (183)
Q Consensus       104 ~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~~~~~~  173 (183)
                      |..+++|++|++++|+ +++..|..+..+++|++|+|++|++++..+..+..+++|+.|+|++|++.|.+
T Consensus        74 f~~l~~L~~L~Ls~N~-l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c  142 (193)
T 2wfh_A           74 FSNMTQLLTLILSYNR-LRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDC  142 (193)
T ss_dssp             TTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECSG
T ss_pred             ccCCCCCCEEECCCCc-cCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecCC
Confidence            5566666677777776 66655556666677777777777776433344666677777777777776643

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.19  E-value=4.9e-11  Score=98.66  Aligned_cols=72  Identities=14%  Similarity=0.068  Sum_probs=63.1

Q ss_pred             CCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCccccccccEEEcccCCcccccCCc
Q 046467          104 FSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIFYKIVLMLSAGVCFYNAE  176 (183)
Q Consensus       104 ~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~~~~~~~~e  176 (183)
                      +..+++|++|++++|+ +.+.+|..++.+++|++|++++|++.+.+|..++++++|+.|+|++|++.+.+|.+
T Consensus       225 l~~l~~L~~L~Ls~n~-~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~  296 (328)
T 4fcg_A          225 IHHLPKLEELDLRGCT-ALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSL  296 (328)
T ss_dssp             GGGCTTCCEEECTTCT-TCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGG
T ss_pred             hccCCCCCEEECcCCc-chhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHH
Confidence            6678888999999988 88888888888999999999999999999988999999999999999988888854

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.19  E-value=7.8e-11  Score=89.21  Aligned_cols=88  Identities=18%  Similarity=0.135  Sum_probs=68.5

Q ss_pred             CEEEEEeCccCCCcc-cCCcCCccCCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCccccccc
Q 046467           81 SVIGVSLLWYENDNI-IGELGRFKFSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIF  159 (183)
Q Consensus        81 ~v~~L~l~~l~~g~l-~~~~g~l~~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L  159 (183)
                      .++.|++.+..-..+ |..     +..+++|++|++++|+ +++..+..+..+++|++|+|++|++++..|..+.++++|
T Consensus        34 ~L~~L~Ls~N~l~~~~~~~-----~~~l~~L~~L~Ls~N~-l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L  107 (174)
T 2r9u_A           34 DKQRLWLNNNQITKLEPGV-----FDHLVNLQQLYFNSNK-LTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSL  107 (174)
T ss_dssp             TCSEEECCSSCCCCCCTTT-----TTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             CCcEEEeCCCCccccCHHH-----hcCCcCCCEEECCCCC-CCccChhHhCCcchhhEEECCCCccceeCHHHhccccCC
Confidence            456677764432222 222     7889999999999999 997544557899999999999999996555559999999


Q ss_pred             cEEEcccCCcccccC
Q 046467          160 YKIVLMLSAGVCFYN  174 (183)
Q Consensus       160 ~~L~L~~n~~~~~~~  174 (183)
                      +.|+|++|++.|.++
T Consensus       108 ~~L~L~~N~~~c~~~  122 (174)
T 2r9u_A          108 THIYLYNNPWDCECR  122 (174)
T ss_dssp             SEEECCSSCBCTTBG
T ss_pred             CEEEeCCCCcccccc
Confidence            999999999997654

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.18  E-value=6.3e-11  Score=92.72  Aligned_cols=71  Identities=23%  Similarity=0.251  Sum_probs=61.5

Q ss_pred             CCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCccccccccEEEcccCCcccccCC
Q 046467          104 FSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIFYKIVLMLSAGVCFYNA  175 (183)
Q Consensus       104 ~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~~~~~~~~  175 (183)
                      +..+++|++|++++|+ +++..|..+..+++|++|+|++|++++..|..+..+++|+.|+|++|++.|.++.
T Consensus       101 ~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l  171 (220)
T 2v70_A          101 FKGLESLKTLMLRSNR-ITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCYL  171 (220)
T ss_dssp             GTTCSSCCEEECTTSC-CCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGGG
T ss_pred             hcCCcCCCEEECCCCc-CCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCch
Confidence            6778888999999998 8888888888899999999999999988888888899999999999998887653

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.18  E-value=1.1e-10  Score=91.41  Aligned_cols=70  Identities=17%  Similarity=0.080  Sum_probs=58.8

Q ss_pred             CCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCccccccccEEEcccCCcccccC
Q 046467          104 FSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIFYKIVLMLSAGVCFYN  174 (183)
Q Consensus       104 ~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~~~~~~~  174 (183)
                      +..+++|++|++++|. +++..|..+..+++|++|+|++|++++..|..+..+++|+.|+|++|++.+..|
T Consensus        77 ~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~  146 (220)
T 2v70_A           77 FEGASGVNEILLTSNR-LENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAP  146 (220)
T ss_dssp             TTTCTTCCEEECCSSC-CCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCT
T ss_pred             hCCCCCCCEEECCCCc-cCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECH
Confidence            6778888888888888 887666778888888888888888888888888888888899988888887655

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.17  E-value=8.7e-11  Score=97.10  Aligned_cols=100  Identities=17%  Similarity=0.162  Sum_probs=70.6

Q ss_pred             CccccceeCCC------------CCEEEEEeCc-cCCCcccCCcCCccCCCCCCCcEEeccCCCCccccCCccccCCCCC
Q 046467           69 CKWTGISCNSA------------GSVIGVSLLW-YENDNIIGELGRFKFSCFPNLRSFKIRSNYLLSGSIPSEITVLSTI  135 (183)
Q Consensus        69 C~w~gv~C~~~------------~~v~~L~l~~-l~~g~l~~~~g~l~~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L  135 (183)
                      |.|..+.|...            ..++.|++.+ .....+++.    .|..+++|+.|+|++|+ |+|..|..|.++++|
T Consensus         8 C~~~~v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l~~~~~~----~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L   82 (347)
T 2ifg_A            8 HGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELR----DLRGLGELRNLTIVKSG-LRFVAPDAFHFTPRL   82 (347)
T ss_dssp             SSSSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGG----GSCSCCCCSEEECCSSC-CCEECTTGGGSCSCC
T ss_pred             ccCCEEEcCCCCCCCccCCCCCCCCeeEEEccCCCCCCCcChh----HhccccCCCEEECCCCc-cceeCHHHhcCCcCC
Confidence            77777877643            1356666653 322333311    17788889999999998 998888888889999


Q ss_pred             CEEEccCCccccCCCCCccccccccEEEcccCCcccccC
Q 046467          136 RTLELTSNNLTGKLPNFTVTYYIFYKIVLMLSAGVCFYN  174 (183)
Q Consensus       136 ~~L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~~~~~~~  174 (183)
                      ++|+|++|+|++ +|+.+.....|+.|+|.+|++.|-+.
T Consensus        83 ~~L~l~~N~l~~-~~~~~~~~~~L~~l~l~~N~~~c~c~  120 (347)
T 2ifg_A           83 SRLNLSFNALES-LSWKTVQGLSLQELVLSGNPLHCSCA  120 (347)
T ss_dssp             CEEECCSSCCSC-CCSTTTCSCCCCEEECCSSCCCCCGG
T ss_pred             CEEeCCCCccce-eCHHHcccCCceEEEeeCCCccCCCc
Confidence            999999999985 55444333339999999998887643

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.15  E-value=1.7e-10  Score=90.25  Aligned_cols=69  Identities=14%  Similarity=0.045  Sum_probs=42.6

Q ss_pred             CCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCccccccccEEEcccCCccccc
Q 046467          104 FSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIFYKIVLMLSAGVCFY  173 (183)
Q Consensus       104 ~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~~~~~~  173 (183)
                      +..+++|++|++++|+ +++..+..+..+++|++|+|++|++++..|..+..+++|+.|+|++|++....
T Consensus        76 ~~~l~~L~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~  144 (220)
T 2v9t_B           76 FQGLRSLNSLVLYGNK-ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIA  144 (220)
T ss_dssp             TTTCSSCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred             hhCCcCCCEEECCCCc-CCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEEC
Confidence            5556666666666666 66322233456666666666666666666666666667777777666666543

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.15  E-value=6.9e-11  Score=102.92  Aligned_cols=71  Identities=15%  Similarity=0.119  Sum_probs=34.2

Q ss_pred             CCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCcccc-CCCCCccccccccEEEcccCCcccccCC
Q 046467          104 FSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTG-KLPNFTVTYYIFYKIVLMLSAGVCFYNA  175 (183)
Q Consensus       104 ~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G-~iP~~l~~l~~L~~L~L~~n~~~~~~~~  175 (183)
                      +..+++|++|++++|. +++..|..++++++|++|++++|++++ .+|..++++++|++|++++|+..+.+|.
T Consensus        70 ~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~  141 (549)
T 2z81_A           70 FYSLGSLEHLDLSDNH-LSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRR  141 (549)
T ss_dssp             TTTCTTCCEEECTTSC-CCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECT
T ss_pred             ccccccCCEEECCCCc-cCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCH
Confidence            3444445555555555 444333334555555555555555544 3444455555555555555544444443

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.11  E-value=1.7e-10  Score=91.56  Aligned_cols=66  Identities=18%  Similarity=0.088  Sum_probs=31.3

Q ss_pred             CCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCccccccccEEEcccCCcc
Q 046467          104 FSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIFYKIVLMLSAGV  170 (183)
Q Consensus       104 ~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~~~  170 (183)
                      +..+++|++|++++|. +++..|..+..+++|++|++++|++++..|..+..+++|++|+|++|++.
T Consensus        55 ~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~  120 (251)
T 3m19_A           55 FRGLTKLTWLNLDYNQ-LQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLK  120 (251)
T ss_dssp             TTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             hcCcccCCEEECCCCc-CCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCC
Confidence            3444455555555555 55444444444455555555555544333333444444444444444444

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.10  E-value=4.3e-11  Score=98.23  Aligned_cols=72  Identities=18%  Similarity=0.332  Sum_probs=64.4

Q ss_pred             CCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCccccc-cccEEEcccCCcccccCCc
Q 046467          104 FSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYY-IFYKIVLMLSAGVCFYNAE  176 (183)
Q Consensus       104 ~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~-~L~~L~L~~n~~~~~~~~e  176 (183)
                      +.++++|++|++++|. ++|.+|..+..+++|++|++++|+++|.+|..+++++ +|+.|+|++|++.+.+|.+
T Consensus       121 ~~~l~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~  193 (313)
T 1ogq_A          121 LSQIKTLVTLDFSYNA-LSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPT  193 (313)
T ss_dssp             GGGCTTCCEEECCSSE-EESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGG
T ss_pred             HhCCCCCCEEeCCCCc-cCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChH
Confidence            6788899999999999 9999999999999999999999999999999999988 8999999999988776653

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.10  E-value=1.3e-10  Score=88.94  Aligned_cols=103  Identities=20%  Similarity=0.282  Sum_probs=82.0

Q ss_pred             CccccceeCCC----------CCEEEEEeCccCCCcccCCcCCccCCCCCCCcEEeccCCCCccccCCccccCCCCCCEE
Q 046467           69 CKWTGISCNSA----------GSVIGVSLLWYENDNIIGELGRFKFSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTL  138 (183)
Q Consensus        69 C~w~gv~C~~~----------~~v~~L~l~~l~~g~l~~~~g~l~~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L  138 (183)
                      |.|..+.|...          ..++.|++.+.....+++. +.  +..+++|++|++++|. +++..|..+..+++|++|
T Consensus         8 C~~~~l~~s~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~-~~--~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L   83 (192)
T 1w8a_A            8 CEGTTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSD-GL--FGRLPHLVKLELKRNQ-LTGIEPNAFEGASHIQEL   83 (192)
T ss_dssp             EETTEEECTTSCCSSCCSCCCTTCSEEECCSCCCCSBCCS-CS--GGGCTTCCEEECCSSC-CCCBCTTTTTTCTTCCEE
T ss_pred             ECCCEEEcCCCCcCcCccCCCCCCCEEECCCCcCCccCCc-cc--cccCCCCCEEECCCCC-CCCcCHhHcCCcccCCEE
Confidence            45666666531          2567777765432333321 01  6788999999999999 999989999999999999


Q ss_pred             EccCCccccCCCCCccccccccEEEcccCCcccccCC
Q 046467          139 ELTSNNLTGKLPNFTVTYYIFYKIVLMLSAGVCFYNA  175 (183)
Q Consensus       139 ~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~~~~~~~~  175 (183)
                      +|++|++++..|..+.++++|++|+|++|++.+..|.
T Consensus        84 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~  120 (192)
T 1w8a_A           84 QLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPG  120 (192)
T ss_dssp             ECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTT
T ss_pred             ECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHH
Confidence            9999999998888899999999999999999987664

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.09  E-value=3.5e-10  Score=88.46  Aligned_cols=70  Identities=14%  Similarity=0.121  Sum_probs=65.0

Q ss_pred             CCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCccccccccEEEcccCCcccccC
Q 046467          104 FSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIFYKIVLMLSAGVCFYN  174 (183)
Q Consensus       104 ~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~~~~~~~  174 (183)
                      +..+++|++|++++|. +++..|..+..+++|++|+|++|++++..|..+..+++|+.|+|++|++.|.++
T Consensus       100 f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~  169 (220)
T 2v9t_B          100 FEGLFSLQLLLLNANK-INCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCH  169 (220)
T ss_dssp             TTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSGG
T ss_pred             ccCCCCCCEEECCCCC-CCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCCc
Confidence            6789999999999999 999889999999999999999999998777789999999999999999998654

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.09  E-value=3.1e-10  Score=85.28  Aligned_cols=101  Identities=17%  Similarity=0.166  Sum_probs=78.9

Q ss_pred             CccccceeCCC----------CCEEEEEeCccCCCcccCCcCCccCCCCCCCcEEeccCCCCccccCCccccCCCCCCEE
Q 046467           69 CKWTGISCNSA----------GSVIGVSLLWYENDNIIGELGRFKFSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTL  138 (183)
Q Consensus        69 C~w~gv~C~~~----------~~v~~L~l~~l~~g~l~~~~g~l~~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L  138 (183)
                      |.|.++.|...          ..++.|++.+.....+++..    +..+++|++|++++|+ +++..+..+..+++|++|
T Consensus         7 C~~~~l~~~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~----~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L   81 (177)
T 2o6r_A            7 CSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGV----FDKLTQLTKLSLSQNQ-IQSLPDGVFDKLTKLTIL   81 (177)
T ss_dssp             EETTEEECCSSCCSSCCTTCCTTCSEEECCSSCCCCCCTTT----TTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEE
T ss_pred             eCCCEEEecCCCCccCCCCCCCCCcEEEeCCCcccEeCHHH----hcCcccccEEECCCCc-ceEeChhHccCCCccCEE
Confidence            57888888632          25677887754222333221    6788999999999999 997666668999999999


Q ss_pred             EccCCccccCCCCCccccccccEEEcccCCcccccC
Q 046467          139 ELTSNNLTGKLPNFTVTYYIFYKIVLMLSAGVCFYN  174 (183)
Q Consensus       139 ~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~~~~~~~  174 (183)
                      ++++|++++..|..+.++++|+.|+|++|++.+..+
T Consensus        82 ~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~  117 (177)
T 2o6r_A           82 YLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPD  117 (177)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred             ECCCCCccccCHHHhhCCcccCEEECcCCcceEeCH
Confidence            999999997766778999999999999999985433

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.09  E-value=3.3e-10  Score=87.01  Aligned_cols=88  Identities=16%  Similarity=0.051  Sum_probs=74.8

Q ss_pred             CEEEEEeCccCCCcccCCcCCccCCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCcccccccc
Q 046467           81 SVIGVSLLWYENDNIIGELGRFKFSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIFY  160 (183)
Q Consensus        81 ~v~~L~l~~l~~g~l~~~~g~l~~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~  160 (183)
                      .++.|++.+.....+|..     +..+++|++|++++|. +++..|..|..+++|++|+|++|++++..|..+..+++|+
T Consensus        32 ~l~~L~L~~n~i~~ip~~-----~~~l~~L~~L~Ls~N~-i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~  105 (193)
T 2wfh_A           32 DVTELYLDGNQFTLVPKE-----LSNYKHLTLIDLSNNR-ISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLR  105 (193)
T ss_dssp             TCCEEECCSSCCCSCCGG-----GGGCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCC
T ss_pred             CCCEEECCCCcCchhHHH-----hhcccCCCEEECCCCc-CCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCC
Confidence            577888875433445433     7889999999999999 9987778899999999999999999988888899999999


Q ss_pred             EEEcccCCcccccC
Q 046467          161 KIVLMLSAGVCFYN  174 (183)
Q Consensus       161 ~L~L~~n~~~~~~~  174 (183)
                      .|+|++|++....+
T Consensus       106 ~L~L~~N~l~~~~~  119 (193)
T 2wfh_A          106 LLSLHGNDISVVPE  119 (193)
T ss_dssp             EEECCSSCCCBCCT
T ss_pred             EEECCCCCCCeeCh
Confidence            99999999985433

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.07  E-value=2.8e-10  Score=96.83  Aligned_cols=70  Identities=19%  Similarity=0.099  Sum_probs=36.4

Q ss_pred             CCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCC--ccccccccEEEcccCCcccccC
Q 046467          104 FSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNF--TVTYYIFYKIVLMLSAGVCFYN  174 (183)
Q Consensus       104 ~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~--l~~l~~L~~L~L~~n~~~~~~~  174 (183)
                      +..+++|++|++++|. +++..|..++++++|++|++++|++++.+|..  +.++++|++|+|++|++.+..|
T Consensus        75 ~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  146 (455)
T 3v47_A           75 FRGLSSLIILKLDYNQ-FLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQP  146 (455)
T ss_dssp             TTTCTTCCEEECTTCT-TCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCC
T ss_pred             ccccccCCEEeCCCCc-cCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCc
Confidence            4445555555555555 55555555555555555555555555544333  4555555555555555554444

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.07  E-value=8.4e-10  Score=83.45  Aligned_cols=84  Identities=12%  Similarity=0.008  Sum_probs=67.5

Q ss_pred             EEEEeCccCCCcccCCcCCccCCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCccccccccEE
Q 046467           83 IGVSLLWYENDNIIGELGRFKFSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIFYKI  162 (183)
Q Consensus        83 ~~L~l~~l~~g~l~~~~g~l~~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L  162 (183)
                      +.+++.+.+-+.+|..     +  .++|++|++++|+ +++..|..+.++++|++|+|++|++++..|..+.++++|+.|
T Consensus        15 ~~l~~~~n~l~~iP~~-----~--~~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L   86 (174)
T 2r9u_A           15 TLVNCQNIRLASVPAG-----I--PTDKQRLWLNNNQ-ITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQL   86 (174)
T ss_dssp             SEEECCSSCCSSCCSC-----C--CTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             cEEEeCCCCCCccCCC-----c--CCCCcEEEeCCCC-ccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEE
Confidence            3455654433455543     2  3789999999999 999889999999999999999999997444456899999999


Q ss_pred             EcccCCcccccC
Q 046467          163 VLMLSAGVCFYN  174 (183)
Q Consensus       163 ~L~~n~~~~~~~  174 (183)
                      +|++|++....+
T Consensus        87 ~L~~N~l~~l~~   98 (174)
T 2r9u_A           87 DLNDNHLKSIPR   98 (174)
T ss_dssp             ECCSSCCCCCCT
T ss_pred             ECCCCccceeCH
Confidence            999999986544

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.06  E-value=3.7e-10  Score=99.08  Aligned_cols=70  Identities=11%  Similarity=0.157  Sum_probs=58.5

Q ss_pred             CCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCcccc-ccccEEEcccCCcccccC
Q 046467          104 FSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTY-YIFYKIVLMLSAGVCFYN  174 (183)
Q Consensus       104 ~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l-~~L~~L~L~~n~~~~~~~  174 (183)
                      |..+++|++|+|++|+ +++..|..+..+++|++|||++|++++..|..+.++ ++|+.|+|++|++.|-|.
T Consensus       514 f~~l~~L~~L~Ls~N~-l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~  584 (635)
T 4g8a_A          514 FNSLSSLQVLNMSHNN-FFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE  584 (635)
T ss_dssp             TTTCTTCCEEECTTSC-CCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGG
T ss_pred             HcCCCCCCEEECCCCc-CCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCC
Confidence            6778888888888888 888777778888888888888888888888888877 578888888888888654

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.06  E-value=3.3e-10  Score=103.32  Aligned_cols=68  Identities=24%  Similarity=0.294  Sum_probs=41.5

Q ss_pred             CCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCccccccccEEEcccCCcccccCC
Q 046467          104 FSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIFYKIVLMLSAGVCFYNA  175 (183)
Q Consensus       104 ~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~~~~~~~~  175 (183)
                      +..+++|++|+|++|. |+ .+|..++.+++|++|+|++|+|+ .||..++++++|++|+|++|.+. .+|.
T Consensus       243 ~~~l~~L~~L~Ls~N~-l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~  310 (727)
T 4b8c_D          243 IFKYDFLTRLYLNGNS-LT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPW  310 (727)
T ss_dssp             GGGCCSCSCCBCTTSC-CS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCS
T ss_pred             hcCCCCCCEEEeeCCc-Cc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccCh
Confidence            3355566666666666 66 56666666666666666666666 56666666666666666666554 4444

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.04  E-value=1.3e-09  Score=81.89  Aligned_cols=84  Identities=12%  Similarity=0.001  Sum_probs=68.6

Q ss_pred             EEEEeCccCCCcccCCcCCccCCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCccccccccEE
Q 046467           83 IGVSLLWYENDNIIGELGRFKFSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIFYKI  162 (183)
Q Consensus        83 ~~L~l~~l~~g~l~~~~g~l~~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L  162 (183)
                      +.+++.+.+-..+|..       -.++|++|++++|+ +++..|..+.++++|++|+|++|++++..|..+.++++|+.|
T Consensus        12 ~~l~~s~n~l~~ip~~-------~~~~l~~L~L~~N~-i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L   83 (170)
T 3g39_A           12 TTVDCSGKSLASVPTG-------IPTTTQVLYLYDNQ-ITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQL   83 (170)
T ss_dssp             TEEECTTSCCSSCCSC-------CCTTCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             CEEEeCCCCcCccCcc-------CCCCCcEEEcCCCc-CCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEE
Confidence            4577765433445533       24789999999999 999889999999999999999999997656667899999999


Q ss_pred             EcccCCcccccC
Q 046467          163 VLMLSAGVCFYN  174 (183)
Q Consensus       163 ~L~~n~~~~~~~  174 (183)
                      +|++|++.+..+
T Consensus        84 ~L~~N~l~~~~~   95 (170)
T 3g39_A           84 SLNDNQLKSIPR   95 (170)
T ss_dssp             ECCSSCCCCCCT
T ss_pred             ECCCCccCEeCH
Confidence            999999986544

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.03  E-value=1.7e-10  Score=84.26  Aligned_cols=88  Identities=11%  Similarity=0.098  Sum_probs=71.7

Q ss_pred             CCEEEEEeCccCCCcccCCcCCccCCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCcccc-CCCCCcccccc
Q 046467           80 GSVIGVSLLWYENDNIIGELGRFKFSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTG-KLPNFTVTYYI  158 (183)
Q Consensus        80 ~~v~~L~l~~l~~g~l~~~~g~l~~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G-~iP~~l~~l~~  158 (183)
                      ..++.|++.+..-..+ ..     +..+++|++|++++|. +++.+|..+..+++|++|++++|.+++ +.|..+.++++
T Consensus        42 ~~L~~L~l~~n~l~~~-~~-----~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~  114 (149)
T 2je0_A           42 EELEFLSTINVGLTSI-AN-----LPKLNKLKKLELSDNR-VSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLEN  114 (149)
T ss_dssp             TTCCEEECTTSCCCCC-TT-----CCCCTTCCEEECCSSC-CCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTT
T ss_pred             CCCcEEECcCCCCCCc-hh-----hhcCCCCCEEECCCCc-ccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCC
Confidence            4677888874321222 12     7889999999999999 998888888889999999999999997 35588999999


Q ss_pred             ccEEEcccCCcccccC
Q 046467          159 FYKIVLMLSAGVCFYN  174 (183)
Q Consensus       159 L~~L~L~~n~~~~~~~  174 (183)
                      |+.|++++|++.+..+
T Consensus       115 L~~L~l~~N~l~~~~~  130 (149)
T 2je0_A          115 LKSLDLFNCEVTNLND  130 (149)
T ss_dssp             CCEEECTTCGGGGSTT
T ss_pred             CCEEeCcCCcccchHH
Confidence            9999999999887654

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.03  E-value=1.3e-09  Score=83.84  Aligned_cols=90  Identities=16%  Similarity=0.127  Sum_probs=71.0

Q ss_pred             CCEEEEEeCccCCCcccCCcCCccCCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCccccccc
Q 046467           80 GSVIGVSLLWYENDNIIGELGRFKFSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIF  159 (183)
Q Consensus        80 ~~v~~L~l~~l~~g~l~~~~g~l~~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L  159 (183)
                      ..++.|++.+..-..+++..    +..+++|++|++++|+ +++..+..+..+++|++|++++|++++..+..+.++++|
T Consensus        76 ~~L~~L~Ls~n~l~~~~~~~----~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L  150 (208)
T 2o6s_A           76 TSLTYLNLSTNQLQSLPNGV----FDKLTQLKELALNTNQ-LQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSL  150 (208)
T ss_dssp             TTCCEEECCSSCCCCCCTTT----TTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred             CCcCEEECCCCcCCccCHhH----hcCccCCCEEEcCCCc-CcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCc
Confidence            35666666643222222211    6789999999999999 997666678999999999999999997666668999999


Q ss_pred             cEEEcccCCcccccC
Q 046467          160 YKIVLMLSAGVCFYN  174 (183)
Q Consensus       160 ~~L~L~~n~~~~~~~  174 (183)
                      +.|+|++|++.|.+|
T Consensus       151 ~~L~l~~N~~~~~~~  165 (208)
T 2o6s_A          151 QYIWLHDNPWDCTCP  165 (208)
T ss_dssp             CEEECCSCCBCCCTT
T ss_pred             cEEEecCCCeecCCC
Confidence            999999999988766

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.02  E-value=1.1e-09  Score=87.79  Aligned_cols=70  Identities=19%  Similarity=0.150  Sum_probs=53.6

Q ss_pred             CCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCccccccccEEEcccCCcccccC
Q 046467          104 FSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIFYKIVLMLSAGVCFYN  174 (183)
Q Consensus       104 ~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~~~~~~~  174 (183)
                      +..+++|++|++++|+ +++..|..++.+++|++|++++|++++..|..+.++++|+.|+|++|++.|.+|
T Consensus       153 ~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  222 (272)
T 3rfs_A          153 FDKLTNLTELDLSYNQ-LQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP  222 (272)
T ss_dssp             TTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred             hccCccCCEEECCCCC-cCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccccCc
Confidence            4667778888888888 776656667778888888888888887666667788888888888888777665

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.02  E-value=1e-09  Score=86.22  Aligned_cols=69  Identities=19%  Similarity=0.202  Sum_probs=63.6

Q ss_pred             CCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCccccccccEEEcccCCcccccC
Q 046467          104 FSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIFYKIVLMLSAGVCFYN  174 (183)
Q Consensus       104 ~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~~~~~~~  174 (183)
                      +..+++|++|++++|+ ++ .+|..+..+++|++|+|++|++++..+..+..+++|+.|+|.+|++.|.++
T Consensus       108 ~~~l~~L~~L~Ls~N~-l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  176 (229)
T 3e6j_A          108 FDRLVHLKELFMCCNK-LT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR  176 (229)
T ss_dssp             TTTCTTCCEEECCSSC-CC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred             hCcchhhCeEeccCCc-cc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence            6789999999999999 99 799999999999999999999997666779999999999999999998764

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.00  E-value=6.8e-10  Score=98.66  Aligned_cols=88  Identities=14%  Similarity=0.036  Sum_probs=75.5

Q ss_pred             CCEEEEEeCccCCCcccCCcCCccCCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCC-CCCcccccc
Q 046467           80 GSVIGVSLLWYENDNIIGELGRFKFSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKL-PNFTVTYYI  158 (183)
Q Consensus        80 ~~v~~L~l~~l~~g~l~~~~g~l~~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~i-P~~l~~l~~  158 (183)
                      ..++.|++.+..-..+|..     ++.+++|+.|++++|. +++ +| .++.+++|++|+|++|++++.+ |..++++++
T Consensus       463 ~~L~~L~Ls~N~l~~lp~~-----~~~l~~L~~L~Ls~N~-l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~  534 (567)
T 1dce_A          463 LLVTHLDLSHNRLRALPPA-----LAALRCLEVLQASDNA-LEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPR  534 (567)
T ss_dssp             TTCCEEECCSSCCCCCCGG-----GGGCTTCCEEECCSSC-CCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTT
T ss_pred             ccCcEeecCcccccccchh-----hhcCCCCCEEECCCCC-CCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCC
Confidence            4677888875433355544     7888999999999999 997 77 8999999999999999999887 999999999


Q ss_pred             ccEEEcccCCcccccCC
Q 046467          159 FYKIVLMLSAGVCFYNA  175 (183)
Q Consensus       159 L~~L~L~~n~~~~~~~~  175 (183)
                      |+.|+|++|++.+.+|.
T Consensus       535 L~~L~L~~N~l~~~~~~  551 (567)
T 1dce_A          535 LVLLNLQGNSLCQEEGI  551 (567)
T ss_dssp             CCEEECTTSGGGGSSSC
T ss_pred             CCEEEecCCcCCCCccH
Confidence            99999999999988764

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=98.99  E-value=1.7e-09  Score=85.73  Aligned_cols=68  Identities=19%  Similarity=0.237  Sum_probs=53.1

Q ss_pred             CCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCccccccccEEEcccCCcccc
Q 046467          104 FSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIFYKIVLMLSAGVCF  172 (183)
Q Consensus       104 ~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~~~~~  172 (183)
                      +..+++|++|++++|+ +++..|..+..+++|++|+|++|++++..|..+.++++|+.|+|++|++.|.
T Consensus       127 ~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          127 FDRLTKLKELRLNTNQ-LQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS  194 (251)
T ss_dssp             TTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred             hccCCcccEEECcCCc-CCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence            5667788888888888 8765555677888888888888888876666777888888888888888775

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.99  E-value=6.5e-10  Score=91.79  Aligned_cols=69  Identities=16%  Similarity=0.106  Sum_probs=63.1

Q ss_pred             CCCCCCCcEEeccC-CCCccccCCccccCCCCCCEEEccCCccccCCCCCccccccccEEEcccCCccccc
Q 046467          104 FSCFPNLRSFKIRS-NYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIFYKIVLMLSAGVCFY  173 (183)
Q Consensus       104 ~~~l~~L~~L~ls~-N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~~~~~~  173 (183)
                      ++.+++|+.|+|++ |. +++..|..|+.+++|++|+|++|+|+|..|..++++++|+.|+|++|++.+..
T Consensus        27 l~~~~~L~~L~l~~~n~-l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~   96 (347)
T 2ifg_A           27 LPGAENLTELYIENQQH-LQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLS   96 (347)
T ss_dssp             SCSCSCCSEEECCSCSS-CCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCC
T ss_pred             CCCCCCeeEEEccCCCC-CCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeC
Confidence            56778999999996 99 99877788999999999999999999988889999999999999999998643

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=98.99  E-value=8.4e-10  Score=91.44  Aligned_cols=84  Identities=17%  Similarity=0.128  Sum_probs=43.8

Q ss_pred             CEEEEEeCccCCCcccCCcCCccCCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCC-ccccccc
Q 046467           81 SVIGVSLLWYENDNIIGELGRFKFSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNF-TVTYYIF  159 (183)
Q Consensus        81 ~v~~L~l~~l~~g~l~~~~g~l~~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~-l~~l~~L  159 (183)
                      .++.|++.+.+-..++..    .+.++++|++|++++|. +++..|..+.++++|++|++++|++++ +|.. +.++++|
T Consensus        53 ~L~~L~l~~n~i~~~~~~----~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L  126 (353)
T 2z80_A           53 AVKSLDLSNNRITYISNS----DLQRCVNLQALVLTSNG-INTIEEDSFSSLGSLEHLDLSYNYLSN-LSSSWFKPLSSL  126 (353)
T ss_dssp             TCCEEECTTSCCCEECTT----TTTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCSS-CCHHHHTTCTTC
T ss_pred             cCcEEECCCCcCcccCHH----HhccCCCCCEEECCCCc-cCccCHhhcCCCCCCCEEECCCCcCCc-CCHhHhCCCccC
Confidence            456666654322222221    04455556666666665 555555555555566666666665553 3332 5555555


Q ss_pred             cEEEcccCCcc
Q 046467          160 YKIVLMLSAGV  170 (183)
Q Consensus       160 ~~L~L~~n~~~  170 (183)
                      ++|+|++|++.
T Consensus       127 ~~L~L~~n~l~  137 (353)
T 2z80_A          127 TFLNLLGNPYK  137 (353)
T ss_dssp             SEEECTTCCCS
T ss_pred             CEEECCCCCCc
Confidence            55555555554

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=98.98  E-value=1.8e-09  Score=99.58  Aligned_cols=72  Identities=18%  Similarity=0.131  Sum_probs=54.8

Q ss_pred             CCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCC--ccccccccEEEcccCCcccccCCc
Q 046467          104 FSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNF--TVTYYIFYKIVLMLSAGVCFYNAE  176 (183)
Q Consensus       104 ~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~--l~~l~~L~~L~L~~n~~~~~~~~e  176 (183)
                      +.++++|++|++++|. +++..|..++++++|++|+|++|.+++.+|..  ++++++|+.|+|++|++.+..+.+
T Consensus        69 f~~L~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~  142 (844)
T 3j0a_A           69 FRNLPNLRILDLGSSK-IYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHP  142 (844)
T ss_dssp             TSSCTTCCEEECTTCC-CCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCG
T ss_pred             hcCCCCCCEEECCCCc-CcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccch
Confidence            6777788888888888 87777777888888888888888887777665  777788888888887777665543

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=98.97  E-value=2.5e-10  Score=102.27  Aligned_cols=71  Identities=14%  Similarity=0.122  Sum_probs=59.0

Q ss_pred             CCCCCCCcEEeccCCCCcccc-----------------CCcccc--CCCCCCEEEccCCccccCCCCCccccccccEEEc
Q 046467          104 FSCFPNLRSFKIRSNYLLSGS-----------------IPSEIT--VLSTIRTLELTSNNLTGKLPNFTVTYYIFYKIVL  164 (183)
Q Consensus       104 ~~~l~~L~~L~ls~N~~l~G~-----------------iP~~~~--~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~L  164 (183)
                      ++++++|++|++++|. ++|.                 +|+.++  ++++|++|++++|++.|.+|..++++++|++|+|
T Consensus       202 l~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L  280 (636)
T 4eco_A          202 VMRLTKLRQFYMGNSP-FVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINV  280 (636)
T ss_dssp             GGGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEEC
T ss_pred             HhcccCCCEEECcCCc-cccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEEC
Confidence            6778888888888888 8886                 888888  8888888888888888888888888888888888


Q ss_pred             ccCC-ccc-ccCC
Q 046467          165 MLSA-GVC-FYNA  175 (183)
Q Consensus       165 ~~n~-~~~-~~~~  175 (183)
                      ++|+ ++| .+|.
T Consensus       281 s~n~~l~~~~lp~  293 (636)
T 4eco_A          281 ACNRGISGEQLKD  293 (636)
T ss_dssp             TTCTTSCHHHHHH
T ss_pred             cCCCCCccccchH
Confidence            8887 777 5554

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=98.96  E-value=7.3e-10  Score=82.46  Aligned_cols=88  Identities=14%  Similarity=0.132  Sum_probs=69.9

Q ss_pred             CCEEEEEeCccCCCcccCCcCCccCCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccC-CCCCcccccc
Q 046467           80 GSVIGVSLLWYENDNIIGELGRFKFSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGK-LPNFTVTYYI  158 (183)
Q Consensus        80 ~~v~~L~l~~l~~g~l~~~~g~l~~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~-iP~~l~~l~~  158 (183)
                      ..++.|++.+..-..+ ..     +..+++|++|++++|. +++.+|..+..+++|++|++++|++++. .+..+..+++
T Consensus        49 ~~L~~L~l~~n~l~~~-~~-----~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~  121 (168)
T 2ell_A           49 VNLEFLSLINVGLISV-SN-----LPKLPKLKKLELSENR-IFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLEC  121 (168)
T ss_dssp             GGCCEEEEESSCCCCC-SS-----CCCCSSCCEEEEESCC-CCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSC
T ss_pred             CCCCEEeCcCCCCCCh-hh-----hccCCCCCEEECcCCc-CchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCC
Confidence            3567777764321112 12     7889999999999999 9988888888899999999999999863 2378999999


Q ss_pred             ccEEEcccCCcccccC
Q 046467          159 FYKIVLMLSAGVCFYN  174 (183)
Q Consensus       159 L~~L~L~~n~~~~~~~  174 (183)
                      |+.|++++|++.+..+
T Consensus       122 L~~L~l~~N~l~~~~~  137 (168)
T 2ell_A          122 LKSLDLFNCEVTNLND  137 (168)
T ss_dssp             CCEEECCSSGGGTSTT
T ss_pred             CCEEEeeCCcCcchHH
Confidence            9999999999886654

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=98.95  E-value=1.9e-09  Score=91.65  Aligned_cols=70  Identities=17%  Similarity=0.158  Sum_probs=59.1

Q ss_pred             CCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCccccccccEEEcccCCcccccC
Q 046467          104 FSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIFYKIVLMLSAGVCFYN  174 (183)
Q Consensus       104 ~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~~~~~~~  174 (183)
                      +..+++|++|++++|+ +++..|..+..+++|++|++++|++++..+..+..+++|+.|+|++|++.|.+|
T Consensus       343 ~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~  412 (455)
T 3v47_A          343 FENLDKLEVLDLSYNH-IRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  412 (455)
T ss_dssp             GTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred             hcCcccCCEEECCCCc-ccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence            6778888888888888 888888888888899999999998886555556888899999999999988887

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=98.95  E-value=3.1e-10  Score=103.46  Aligned_cols=69  Identities=17%  Similarity=0.134  Sum_probs=64.9

Q ss_pred             CCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCccccccccEEEcccCCcccccCC
Q 046467          104 FSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIFYKIVLMLSAGVCFYNA  175 (183)
Q Consensus       104 ~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~~~~~~~~  175 (183)
                      ++++++|++|+|++|. |+ .||..++.+++|++|+|++|.|+ .||.+++++++|+.|+|++|++.+.+|.
T Consensus       266 ~~~l~~L~~L~Ls~N~-l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~  334 (727)
T 4b8c_D          266 IKNLSNLRVLDLSHNR-LT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLK  334 (727)
T ss_dssp             GGGGTTCCEEECTTSC-CS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHH
T ss_pred             hhCCCCCCEEeCcCCc-CC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChH
Confidence            7788999999999999 99 89999999999999999999997 8999999999999999999999987664

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=98.94  E-value=2.1e-09  Score=94.24  Aligned_cols=72  Identities=17%  Similarity=0.131  Sum_probs=67.3

Q ss_pred             CCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCccccccccEEEcccCCcccccCCc
Q 046467          104 FSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIFYKIVLMLSAGVCFYNAE  176 (183)
Q Consensus       104 ~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~~~~~~~~e  176 (183)
                      +..+++|++|++++|+ +++..|..|.++++|++|+|++|++++..|..+.++++|++|+|++|++.+..|.+
T Consensus       490 ~~~l~~L~~L~Ls~N~-L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~  561 (635)
T 4g8a_A          490 FTELRNLTFLDLSQCQ-LEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQE  561 (635)
T ss_dssp             CTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSC
T ss_pred             hhhccccCEEECCCCc-cCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHH
Confidence            7889999999999999 99999999999999999999999999988888999999999999999999887653

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=98.93  E-value=4.7e-09  Score=84.13  Aligned_cols=70  Identities=16%  Similarity=0.137  Sum_probs=47.8

Q ss_pred             CCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCccccccccEEEcccCCcccccC
Q 046467          104 FSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIFYKIVLMLSAGVCFYN  174 (183)
Q Consensus       104 ~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~~~~~~~  174 (183)
                      +..+++|++|++++|+ +++..|..+..+++|++|++++|++++..|..++.+++|+.|+|++|++.+..|
T Consensus       129 ~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~  198 (272)
T 3rfs_A          129 FDKLTNLTYLNLAHNQ-LQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPD  198 (272)
T ss_dssp             TTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred             hccCCCCCEEECCCCc-cCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCH
Confidence            4566677777777777 775555556677777777777777776555556777777777777777776544

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=98.92  E-value=1.3e-09  Score=83.37  Aligned_cols=67  Identities=15%  Similarity=0.172  Sum_probs=38.1

Q ss_pred             CCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCccccccccEEEcccCCcccc
Q 046467          104 FSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIFYKIVLMLSAGVCF  172 (183)
Q Consensus       104 ~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~~~~~  172 (183)
                      +..+++|++|++++|. +++..|..++.+++|++|++++|++.+.+| .+.++++|+.|++++|++...
T Consensus       108 l~~l~~L~~L~Ls~n~-i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~  174 (197)
T 4ezg_A          108 LSGLTSLTLLDISHSA-HDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDY  174 (197)
T ss_dssp             CTTCTTCCEEECCSSB-CBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCC
T ss_pred             hcCCCCCCEEEecCCc-cCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcCh
Confidence            4455556666666665 555555555556666666666665333444 455566666666666655543

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=98.91  E-value=2.9e-09  Score=92.78  Aligned_cols=71  Identities=21%  Similarity=0.230  Sum_probs=63.2

Q ss_pred             CCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCccccccccEEEcccCCcccccCC
Q 046467          104 FSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIFYKIVLMLSAGVCFYNA  175 (183)
Q Consensus       104 ~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~~~~~~~~  175 (183)
                      +..+++|++|++++|. +++..|..+.++++|++|++++|++++..|..+.++++|+.|++++|++.|.+|.
T Consensus       466 ~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~  536 (570)
T 2z63_A          466 FTELRNLTFLDLSQCQ-LEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  536 (570)
T ss_dssp             CTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred             hhcccCCCEEECCCCc-cccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence            6778899999999999 9988888899999999999999999988777888999999999999999988775

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=98.90  E-value=5.3e-09  Score=92.12  Aligned_cols=66  Identities=11%  Similarity=0.075  Sum_probs=34.2

Q ss_pred             CCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCccccccccEEEcccCCcc
Q 046467          104 FSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIFYKIVLMLSAGV  170 (183)
Q Consensus       104 ~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~~~  170 (183)
                      |.++++|++|++++|. +++..|..++++++|++|++++|.+++..|..++++++|++|+|++|.+.
T Consensus        76 ~~~l~~L~~L~Ls~n~-l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  141 (606)
T 3vq2_A           76 WHGLHHLSNLILTGNP-IQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIH  141 (606)
T ss_dssp             TTTCTTCCEEECTTCC-CCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCC
T ss_pred             hhchhhcCEeECCCCc-ccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCccc
Confidence            4444555555555555 55444555555555555555555555444444555555555555555554

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=98.90  E-value=1.9e-09  Score=86.57  Aligned_cols=71  Identities=21%  Similarity=0.199  Sum_probs=53.0

Q ss_pred             CCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCccccccccEEEcccCCcccccCC
Q 046467          104 FSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIFYKIVLMLSAGVCFYNA  175 (183)
Q Consensus       104 ~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~~~~~~~~  175 (183)
                      +..+++|++|++++|. +++..|..+.++++|++|++++|++++..|..+..+++|+.|+|++|++.|.++.
T Consensus       173 ~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~  243 (285)
T 1ozn_A          173 FRGLHSLDRLLLHQNR-VAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRA  243 (285)
T ss_dssp             TTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGG
T ss_pred             hcCccccCEEECCCCc-ccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCc
Confidence            5567777777777777 7777777777777888888888888765445577778888888888887776553

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=98.90  E-value=2.8e-09  Score=81.56  Aligned_cols=86  Identities=10%  Similarity=0.113  Sum_probs=70.4

Q ss_pred             CCEEEEEeCccCCCcccCCcCCccCCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCccccccc
Q 046467           80 GSVIGVSLLWYENDNIIGELGRFKFSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIF  159 (183)
Q Consensus        80 ~~v~~L~l~~l~~g~l~~~~g~l~~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L  159 (183)
                      ..++.|++.+. ....++.     +..+++|++|++++|. +++..|..++.+++|++|++++|.+++..|..++++++|
T Consensus        66 ~~L~~L~l~~n-~~~~~~~-----l~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L  138 (197)
T 4ezg_A           66 HNIKDLTINNI-HATNYNP-----ISGLSNLERLRIMGKD-VTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKV  138 (197)
T ss_dssp             TTCSEEEEESC-CCSCCGG-----GTTCTTCCEEEEECTT-CBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSC
T ss_pred             CCCCEEEccCC-CCCcchh-----hhcCCCCCEEEeECCc-cCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCC
Confidence            36677777644 2111112     7788999999999999 999889999999999999999999999889999999999


Q ss_pred             cEEEcccCCcccc
Q 046467          160 YKIVLMLSAGVCF  172 (183)
Q Consensus       160 ~~L~L~~n~~~~~  172 (183)
                      +.|+|++|+....
T Consensus       139 ~~L~L~~n~~i~~  151 (197)
T 4ezg_A          139 NSIDLSYNGAITD  151 (197)
T ss_dssp             CEEECCSCTBCCC
T ss_pred             CEEEccCCCCccc
Confidence            9999999983333

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=98.88  E-value=2.5e-09  Score=79.50  Aligned_cols=72  Identities=13%  Similarity=0.068  Sum_probs=51.0

Q ss_pred             CCCCCCCcEEeccCCCCcccc-CCccccCCCCCCEEEccCCccccCCC---CCccccccccEEEcccCCcccccCCc
Q 046467          104 FSCFPNLRSFKIRSNYLLSGS-IPSEITVLSTIRTLELTSNNLTGKLP---NFTVTYYIFYKIVLMLSAGVCFYNAE  176 (183)
Q Consensus       104 ~~~l~~L~~L~ls~N~~l~G~-iP~~~~~l~~L~~L~Ls~N~l~G~iP---~~l~~l~~L~~L~L~~n~~~~~~~~e  176 (183)
                      +..+++|++|++++|. +++. .+..+..+++|++|++++|.+++..+   ..+..+++|+.|+++.|...-....|
T Consensus        91 ~~~l~~L~~L~Ls~N~-l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~  166 (168)
T 2ell_A           91 AEKLPNLTHLNLSGNK-LKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAPDSD  166 (168)
T ss_dssp             HHHCTTCCEEECBSSS-CCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCCSSS
T ss_pred             HhhCCCCCEEeccCCc-cCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhccccc
Confidence            4457788888888888 7753 22677788888888888888875443   36777888888888887765544443

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.88  E-value=2.2e-09  Score=95.30  Aligned_cols=70  Identities=10%  Similarity=0.036  Sum_probs=48.6

Q ss_pred             CCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCccccccccEEEcccCCcccccC
Q 046467          104 FSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIFYKIVLMLSAGVCFYN  174 (183)
Q Consensus       104 ~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~~~~~~~  174 (183)
                      +..+++|++|++++|. +++..|..++.+++|++|+|++|.+++..|..++++++|++|+|++|++.+..|
T Consensus        95 ~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~  164 (597)
T 3oja_B           95 FAYAHTIQKLYMGFNA-IRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIED  164 (597)
T ss_dssp             TTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCT
T ss_pred             hcCCCCCCEEECCCCc-CCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCCh
Confidence            5667777777777777 777666667777777777777777774333335777777777777777766544

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=98.88  E-value=2.1e-09  Score=90.03  Aligned_cols=69  Identities=13%  Similarity=0.086  Sum_probs=48.7

Q ss_pred             CCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCC-ccccccccEEEcccCCcccccC
Q 046467          104 FSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNF-TVTYYIFYKIVLMLSAGVCFYN  174 (183)
Q Consensus       104 ~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~-l~~l~~L~~L~L~~n~~~~~~~  174 (183)
                      +..+++|++|++++|. +++..|..++++++|++|++++|.++ .+|.. +.++++|++|+|++|++.+..|
T Consensus        89 ~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~  158 (390)
T 3o6n_A           89 FAYAHTIQKLYMGFNA-IRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIED  158 (390)
T ss_dssp             TTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCT
T ss_pred             ccCCCCcCEEECCCCC-CCcCCHHHhcCCCCCCEEECCCCccC-cCCHHHhcCCCCCcEEECCCCccCccCh
Confidence            5667777777777777 77666666777777777777777777 45554 4677777777777777765443

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=98.87  E-value=6.4e-09  Score=86.80  Aligned_cols=67  Identities=22%  Similarity=0.115  Sum_probs=50.6

Q ss_pred             CCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCccccccccEEEcccCCccc
Q 046467          104 FSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIFYKIVLMLSAGVC  171 (183)
Q Consensus       104 ~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~~~~  171 (183)
                      +..+++|++|++++|+ +++..+..+..+++|++|+|++|++++..|..+..+++|+.|+|++|++..
T Consensus        84 ~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~  150 (361)
T 2xot_A           84 FVPVPNLRYLDLSSNH-LHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISR  150 (361)
T ss_dssp             TTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCS
T ss_pred             ccCCCCCCEEECCCCc-CCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCe
Confidence            5667777777777777 776555667777777888888887777667777777888888888777765

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=98.87  E-value=5.9e-09  Score=84.46  Aligned_cols=70  Identities=11%  Similarity=0.151  Sum_probs=51.1

Q ss_pred             CCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCccccc-cccEEEcccCCcccccC
Q 046467          104 FSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYY-IFYKIVLMLSAGVCFYN  174 (183)
Q Consensus       104 ~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~-~L~~L~L~~n~~~~~~~  174 (183)
                      +..+++|+.|++++|. +++..+..+..+++|++|++++|++++.+|..+..++ +|+.|+|++|++.|.++
T Consensus       195 ~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~  265 (306)
T 2z66_A          195 FNSLSSLQVLNMSHNN-FFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE  265 (306)
T ss_dssp             TTTCTTCCEEECTTSC-CSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGG
T ss_pred             hcCCCCCCEEECCCCc-cCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccC
Confidence            5566777777777777 7765555677777777777777777777777777774 77777777777776544

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=98.86  E-value=1.1e-08  Score=81.72  Aligned_cols=70  Identities=19%  Similarity=0.217  Sum_probs=54.7

Q ss_pred             CCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCccccccccEEEcccCCcccccC
Q 046467          104 FSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIFYKIVLMLSAGVCFYN  174 (183)
Q Consensus       104 ~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~~~~~~~  174 (183)
                      +..+++|+.|++++|. +++..+..+..+++|++|++++|++++..+..+..+++|+.|+|++|++.|.++
T Consensus       153 ~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  222 (270)
T 2o6q_A          153 FDKLTSLKELRLYNNQ-LKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCN  222 (270)
T ss_dssp             TTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSS
T ss_pred             ccCCcccceeEecCCc-CcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCc
Confidence            5677888888888888 886555567888888888888888886545557788888888888888887654

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=98.86  E-value=1.3e-09  Score=89.20  Aligned_cols=87  Identities=10%  Similarity=0.023  Sum_probs=52.8

Q ss_pred             CEEEEEeCccC-CCcccCCcCCccCCCCCCCcEEeccCCCCccccCCccccCC-----CCCCEEEccCCccccCCCCCcc
Q 046467           81 SVIGVSLLWYE-NDNIIGELGRFKFSCFPNLRSFKIRSNYLLSGSIPSEITVL-----STIRTLELTSNNLTGKLPNFTV  154 (183)
Q Consensus        81 ~v~~L~l~~l~-~g~l~~~~g~l~~~~l~~L~~L~ls~N~~l~G~iP~~~~~l-----~~L~~L~Ls~N~l~G~iP~~l~  154 (183)
                      .++.|++.+.. .+.+|..+.   +..+++|++|++++|+ +++. |..++.+     ++|++|++++|++++..|..++
T Consensus        96 ~L~~L~L~~n~l~~~~~~~~~---~~~l~~L~~L~Ls~N~-l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~  170 (312)
T 1wwl_A           96 GLQELTLENLEVTGTAPPPLL---EATGPDLNILNLRNVS-WATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVR  170 (312)
T ss_dssp             CCCEEEEEEEBCBSCCCCCSS---SCCSCCCSEEEEESCB-CSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCC
T ss_pred             CccEEEccCCcccchhHHHHH---HhcCCCccEEEccCCC-Ccch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhc
Confidence            45566665332 233443310   1566677777777777 7665 6655555     6677777777777666666677


Q ss_pred             ccccccEEEcccCCcccc
Q 046467          155 TYYIFYKIVLMLSAGVCF  172 (183)
Q Consensus       155 ~l~~L~~L~L~~n~~~~~  172 (183)
                      ++++|+.|+|++|++.+.
T Consensus       171 ~l~~L~~L~Ls~N~l~~~  188 (312)
T 1wwl_A          171 VFPALSTLDLSDNPELGE  188 (312)
T ss_dssp             CCSSCCEEECCSCTTCHH
T ss_pred             cCCCCCEEECCCCCcCcc
Confidence            777777777777765543

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=98.85  E-value=1.5e-08  Score=82.29  Aligned_cols=66  Identities=18%  Similarity=0.153  Sum_probs=32.2

Q ss_pred             CCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCccccccccEEEcccCCcc
Q 046467          104 FSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIFYKIVLMLSAGV  170 (183)
Q Consensus       104 ~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~~~  170 (183)
                      +..+++|++|++++|+ +++..|..+..+++|++|++++|++++..|..+..+++|+.|+|++|++.
T Consensus        96 ~~~l~~L~~L~l~~N~-l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  161 (290)
T 1p9a_G           96 GQTLPALTVLDVSFNR-LTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT  161 (290)
T ss_dssp             TTTCTTCCEEECCSSC-CCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCS
T ss_pred             hccCCCCCEEECCCCc-CcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCC
Confidence            3344455555555555 55433344555555555555555555433333444555555555555444

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=98.85  E-value=1.6e-08  Score=81.22  Aligned_cols=68  Identities=19%  Similarity=0.166  Sum_probs=41.2

Q ss_pred             CCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCccccccccEEEcccCCccc
Q 046467          104 FSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIFYKIVLMLSAGVC  171 (183)
Q Consensus       104 ~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~~~~  171 (183)
                      +..+++|++|++++|..++...|..+..+++|++|++++|.+++..|..+.++++|++|+|++|++..
T Consensus        76 ~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  143 (285)
T 1ozn_A           76 FTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQA  143 (285)
T ss_dssp             TTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred             cCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccc
Confidence            55566666666666641333335556666666666666666666556666666666666666666654

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=98.84  E-value=1e-08  Score=81.95  Aligned_cols=67  Identities=10%  Similarity=0.068  Sum_probs=50.6

Q ss_pred             CCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCccccccccEEEcccCCccc
Q 046467          104 FSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIFYKIVLMLSAGVC  171 (183)
Q Consensus       104 ~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~~~~  171 (183)
                      +..+++|++|++++|. +++..|..+.++++|++|++++|++++..+..++++++|++|++++|++..
T Consensus        72 ~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  138 (276)
T 2z62_A           72 YQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQS  138 (276)
T ss_dssp             TTTCTTCCEEECTTCC-CCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCC
T ss_pred             ccCCcCCCEEECCCCc-cCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccce
Confidence            5667777777777777 777666777777778888888877776666567777888888888777765

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=98.83  E-value=1.2e-08  Score=87.40  Aligned_cols=85  Identities=16%  Similarity=0.063  Sum_probs=56.9

Q ss_pred             CEEEEEeCccCCCcc-cCCcCCccCCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCccccccc
Q 046467           81 SVIGVSLLWYENDNI-IGELGRFKFSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIF  159 (183)
Q Consensus        81 ~v~~L~l~~l~~g~l-~~~~g~l~~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L  159 (183)
                      .++.|++.+.+-..+ +..     +.++++|++|++++|. +++..|..+.++++|++|+|++|++++..+..+..+++|
T Consensus        76 ~l~~L~L~~n~i~~~~~~~-----~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  149 (452)
T 3zyi_A           76 NTRYLNLMENNIQMIQADT-----FRHLHHLEVLQLGRNS-IRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKL  149 (452)
T ss_dssp             TCSEEECCSSCCCEECTTT-----TTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTC
T ss_pred             CccEEECcCCcCceECHHH-----cCCCCCCCEEECCCCc-cCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCC
Confidence            567777764422222 222     6677777777777777 777666777777777777777777775555557777777


Q ss_pred             cEEEcccCCccc
Q 046467          160 YKIVLMLSAGVC  171 (183)
Q Consensus       160 ~~L~L~~n~~~~  171 (183)
                      +.|+|++|++..
T Consensus       150 ~~L~L~~N~l~~  161 (452)
T 3zyi_A          150 RELWLRNNPIES  161 (452)
T ss_dssp             CEEECCSCCCCE
T ss_pred             CEEECCCCCcce
Confidence            777777777663

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.83  E-value=5.2e-09  Score=92.96  Aligned_cols=85  Identities=12%  Similarity=0.101  Sum_probs=71.3

Q ss_pred             CEEEEEeCccCCCcccCCcCCccCCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCcccccccc
Q 046467           81 SVIGVSLLWYENDNIIGELGRFKFSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIFY  160 (183)
Q Consensus        81 ~v~~L~l~~l~~g~l~~~~g~l~~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~  160 (183)
                      .++.|++.+..-..+| .     ++.+++|+.|++++|. ++ .+|..++++++|++|+|++|++++ +| .++++++|+
T Consensus       442 ~L~~L~Ls~n~l~~lp-~-----~~~l~~L~~L~Ls~N~-l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~  511 (567)
T 1dce_A          442 DVRVLHLAHKDLTVLC-H-----LEQLLLVTHLDLSHNR-LR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQ  511 (567)
T ss_dssp             TCSEEECTTSCCSSCC-C-----GGGGTTCCEEECCSSC-CC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCC
T ss_pred             CceEEEecCCCCCCCc-C-----ccccccCcEeecCccc-cc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCc
Confidence            3556777644222233 1     6778899999999999 99 899999999999999999999997 88 899999999


Q ss_pred             EEEcccCCccccc-CC
Q 046467          161 KIVLMLSAGVCFY-NA  175 (183)
Q Consensus       161 ~L~L~~n~~~~~~-~~  175 (183)
                      .|+|++|++.+.. |.
T Consensus       512 ~L~Ls~N~l~~~~~p~  527 (567)
T 1dce_A          512 ELLLCNNRLQQSAAIQ  527 (567)
T ss_dssp             EEECCSSCCCSSSTTG
T ss_pred             EEECCCCCCCCCCCcH
Confidence            9999999999876 54

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=98.83  E-value=8.7e-09  Score=90.76  Aligned_cols=85  Identities=14%  Similarity=0.019  Sum_probs=49.2

Q ss_pred             CEEEEEeCccCCCcc-cCCcCCccCCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCccccccc
Q 046467           81 SVIGVSLLWYENDNI-IGELGRFKFSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIF  159 (183)
Q Consensus        81 ~v~~L~l~~l~~g~l-~~~~g~l~~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L  159 (183)
                      .++.|++.+..-..+ |..     +.++++|++|++++|. +++..|..|+++++|++|++++|++++..|..++++++|
T Consensus        34 ~l~~L~Ls~n~i~~~~~~~-----~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  107 (606)
T 3t6q_A           34 STECLEFSFNVLPTIQNTT-----FSRLINLTFLDLTRCQ-IYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKAL  107 (606)
T ss_dssp             TCCEEECTTCCCSEECTTT-----STTCTTCSEEECTTCC-CCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTC
T ss_pred             cCcEEEccCCccCcCChhH-----hccCccceEEECCCCc-cceeChhhccCccccCeeeCCCCcccccChhhhcccccc
Confidence            456666664322222 222     5556666666666666 666556666666666666666666666556666666666


Q ss_pred             cEEEcccCCccc
Q 046467          160 YKIVLMLSAGVC  171 (183)
Q Consensus       160 ~~L~L~~n~~~~  171 (183)
                      ++|+|++|.+.+
T Consensus       108 ~~L~L~~n~i~~  119 (606)
T 3t6q_A          108 KHLFFIQTGISS  119 (606)
T ss_dssp             CEEECTTSCCSC
T ss_pred             cEeeccccCccc
Confidence            666666665554

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=98.82  E-value=1.1e-08  Score=82.87  Aligned_cols=71  Identities=15%  Similarity=0.116  Sum_probs=57.8

Q ss_pred             CCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCccccccccEEEcccCCcccccCC
Q 046467          104 FSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIFYKIVLMLSAGVCFYNA  175 (183)
Q Consensus       104 ~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~~~~~~~~  175 (183)
                      +..+++|++|++++|. +++..|..+..+++|++|++++|++++..+..+..+++|+.|+|++|++.+..|.
T Consensus       171 ~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~  241 (306)
T 2z66_A          171 FTELRNLTFLDLSQCQ-LEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQ  241 (306)
T ss_dssp             CTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSS
T ss_pred             HhhCcCCCEEECCCCC-cCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHH
Confidence            6677888888888888 8887788888888888888888888876666778888888888888888876554

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=98.82  E-value=9.6e-09  Score=95.61  Aligned_cols=90  Identities=12%  Similarity=0.189  Sum_probs=70.6

Q ss_pred             CEEEEEeCccCCCcccCCcCCccCC--CCCCCcEEeccCCCCccccCCccccCCCCCCEEEccC------CccccCCCCC
Q 046467           81 SVIGVSLLWYENDNIIGELGRFKFS--CFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTS------NNLTGKLPNF  152 (183)
Q Consensus        81 ~v~~L~l~~l~~g~l~~~~g~l~~~--~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~------N~l~G~iP~~  152 (183)
                      .++.|++.+..-..+|..     +.  .+++|+.|++++|+ +++ +|..++.+++|+.|+|++      |++.+.+|..
T Consensus       729 ~L~~L~Ls~N~L~~lp~~-----l~~~~l~~L~~L~Ls~N~-L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~  801 (876)
T 4ecn_A          729 LLTTIDLRFNKLTSLSDD-----FRATTLPYLSNMDVSYNC-FSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTG  801 (876)
T ss_dssp             GCCEEECCSSCCCCCCGG-----GSTTTCTTCCEEECCSSC-CSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTT
T ss_pred             CccEEECCCCCCccchHH-----hhhccCCCcCEEEeCCCC-CCc-cchhhhcCCCCCEEECCCCCCcccccccccChHH
Confidence            455666653322233333     44  78899999999999 997 898899999999999976      8889999999


Q ss_pred             ccccccccEEEcccCCcccccCCccc
Q 046467          153 TVTYYIFYKIVLMLSAGVCFYNAEEV  178 (183)
Q Consensus       153 l~~l~~L~~L~L~~n~~~~~~~~e~~  178 (183)
                      +.++++|+.|+|++|++ +.+|.+..
T Consensus       802 l~~L~~L~~L~Ls~N~L-~~Ip~~l~  826 (876)
T 4ecn_A          802 ITTCPSLIQLQIGSNDI-RKVDEKLT  826 (876)
T ss_dssp             GGGCSSCCEEECCSSCC-CBCCSCCC
T ss_pred             HhcCCCCCEEECCCCCC-CccCHhhc
Confidence            99999999999999999 78887643

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=98.82  E-value=1e-08  Score=85.52  Aligned_cols=65  Identities=14%  Similarity=0.097  Sum_probs=40.1

Q ss_pred             CCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCc----cccccccEEEcccCCcc
Q 046467          104 FSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFT----VTYYIFYKIVLMLSAGV  170 (183)
Q Consensus       104 ~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l----~~l~~L~~L~L~~n~~~  170 (183)
                      +..+++|++|+|++|+ +++..|..+..+++|++|+|++|++++ +|..+    .++++|+.|+|++|++.
T Consensus       108 ~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~~~~l~~L~~L~L~~N~l~  176 (361)
T 2xot_A          108 FSDLQALEVLLLYNNH-IVVVDRNAFEDMAQLQKLYLSQNQISR-FPVELIKDGNKLPKLMLLDLSSNKLK  176 (361)
T ss_dssp             TTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCCS-CCGGGTC----CTTCCEEECCSSCCC
T ss_pred             hCCCcCCCEEECCCCc-ccEECHHHhCCcccCCEEECCCCcCCe-eCHHHhcCcccCCcCCEEECCCCCCC
Confidence            4556666666666666 666556666666666666666666663 45443    45666666666666665

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=98.81  E-value=1.9e-08  Score=82.52  Aligned_cols=93  Identities=13%  Similarity=0.192  Sum_probs=61.3

Q ss_pred             CccccceeCCC----------CCEEEEEeCccCCCcccC-CcCCccCCCCCCCcEEeccCCCCccccCCccccCCCCCCE
Q 046467           69 CKWTGISCNSA----------GSVIGVSLLWYENDNIIG-ELGRFKFSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRT  137 (183)
Q Consensus        69 C~w~gv~C~~~----------~~v~~L~l~~l~~g~l~~-~~g~l~~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~  137 (183)
                      |.|..+.|...          ..++.|++.+..-..+++ .     +.++++|++|++++|. +++..|..++++++|++
T Consensus        33 c~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~-----~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~  106 (332)
T 2ft3_A           33 CHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDD-----FKGLQHLYALVLVNNK-ISKIHEKAFSPLRKLQK  106 (332)
T ss_dssp             EETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCEECTTT-----TTTCTTCCEEECCSSC-CCEECGGGSTTCTTCCE
T ss_pred             ccCCEEECCCCCccccCCCCCCCCeEEECCCCcCCccCHhH-----hhCCCCCcEEECCCCc-cCccCHhHhhCcCCCCE
Confidence            57887777532          256777776442222221 2     6777888888888888 88777777888888888


Q ss_pred             EEccCCccccCCCCCccccccccEEEcccCCcc
Q 046467          138 LELTSNNLTGKLPNFTVTYYIFYKIVLMLSAGV  170 (183)
Q Consensus       138 L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~~~  170 (183)
                      |++++|+++ .+|..+.  ++|++|++++|++.
T Consensus       107 L~L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~  136 (332)
T 2ft3_A          107 LYISKNHLV-EIPPNLP--SSLVELRIHDNRIR  136 (332)
T ss_dssp             EECCSSCCC-SCCSSCC--TTCCEEECCSSCCC
T ss_pred             EECCCCcCC-ccCcccc--ccCCEEECCCCccC
Confidence            888888776 5665544  45555555555554

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=98.80  E-value=1.3e-08  Score=86.89  Aligned_cols=69  Identities=16%  Similarity=0.136  Sum_probs=50.7

Q ss_pred             CCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCccccccccEEEcccCCccccc
Q 046467          104 FSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIFYKIVLMLSAGVCFY  173 (183)
Q Consensus       104 ~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~~~~~~  173 (183)
                      +..+++|+.|++++|+ +++..|..+.++++|++|+|++|++++..+..+..+++|+.|+|++|++.|.+
T Consensus       227 ~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC  295 (440)
T 3zyj_A          227 FQGLMHLQKLWMIQSQ-IQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNC  295 (440)
T ss_dssp             TTTCTTCCEEECTTCC-CCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECSS
T ss_pred             hccCccCCEEECCCCc-eeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCCC
Confidence            5666777777777777 77666667777777778888888777655556677788888888888877654

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=98.80  E-value=1.2e-08  Score=87.36  Aligned_cols=70  Identities=16%  Similarity=0.189  Sum_probs=47.2

Q ss_pred             CCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCccccccccEEEcccCCcccccC
Q 046467          104 FSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIFYKIVLMLSAGVCFYN  174 (183)
Q Consensus       104 ~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~~~~~~~  174 (183)
                      +..+++|+.|++++|+ +++..|..+..+++|++|+|++|++++..+..+..+++|+.|+|++|++.|.+.
T Consensus       238 ~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~  307 (452)
T 3zyi_A          238 FHGLSSLKKLWVMNSQ-VSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCD  307 (452)
T ss_dssp             GTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECSTT
T ss_pred             ccCccCCCEEEeCCCc-CceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCCCC
Confidence            5566666666666666 666666666677777777777777775555556667777777777777766543

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=98.79  E-value=2.3e-08  Score=85.75  Aligned_cols=66  Identities=26%  Similarity=0.294  Sum_probs=32.3

Q ss_pred             CCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCccccccccEEEcccCCcc
Q 046467          104 FSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIFYKIVLMLSAGV  170 (183)
Q Consensus       104 ~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~~~  170 (183)
                      |.++++|++|++++|. +++..|..+.++++|++|+|++|++++..+..+.++++|+.|+|++|++.
T Consensus        52 ~~~l~~L~~L~L~~n~-i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~  117 (477)
T 2id5_A           52 FASFPHLEELELNENI-VSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIV  117 (477)
T ss_dssp             TTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCC
T ss_pred             ccCCCCCCEEECCCCc-cCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccc
Confidence            4445555555555555 55444555555555555555555554322233444555555555554444

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=98.79  E-value=9.4e-09  Score=89.02  Aligned_cols=89  Identities=9%  Similarity=0.075  Sum_probs=51.4

Q ss_pred             CCEEEEEeCccC-CCcccCCcCCccCCCCCCCcEEeccCCCCccc--cCCccccCCCCCCEEEccCCccccCCCCC-ccc
Q 046467           80 GSVIGVSLLWYE-NDNIIGELGRFKFSCFPNLRSFKIRSNYLLSG--SIPSEITVLSTIRTLELTSNNLTGKLPNF-TVT  155 (183)
Q Consensus        80 ~~v~~L~l~~l~-~g~l~~~~g~l~~~~l~~L~~L~ls~N~~l~G--~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~-l~~  155 (183)
                      ..++.|++.+.. .+.+|..     +..+++|++|++++|+ +++  .+|..++.+++|++|++++|++++.+|.. +..
T Consensus       324 ~~L~~L~Ls~n~l~~~~~~~-----~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~  397 (520)
T 2z7x_B          324 SPFLHLDFSNNLLTDTVFEN-----CGHLTELETLILQMNQ-LKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSW  397 (520)
T ss_dssp             CCCCEEECCSSCCCTTTTTT-----CCCCSSCCEEECCSSC-CCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCC
T ss_pred             CcccEEEeECCccChhhhhh-----hccCCCCCEEEccCCc-cCccccchHHHhhCCCCCEEECCCCcCCcccccchhcc
Confidence            345566665332 2223333     5556666666666666 665  45556666666666666666666656653 555


Q ss_pred             cccccEEEcccCCcccccC
Q 046467          156 YYIFYKIVLMLSAGVCFYN  174 (183)
Q Consensus       156 l~~L~~L~L~~n~~~~~~~  174 (183)
                      +++|+.|+|++|++.+..|
T Consensus       398 l~~L~~L~Ls~N~l~~~~~  416 (520)
T 2z7x_B          398 TKSLLSLNMSSNILTDTIF  416 (520)
T ss_dssp             CTTCCEEECCSSCCCGGGG
T ss_pred             CccCCEEECcCCCCCcchh
Confidence            6666666666666654443

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=98.78  E-value=2e-08  Score=88.39  Aligned_cols=90  Identities=17%  Similarity=0.125  Sum_probs=70.8

Q ss_pred             CCEEEEEeCccC-CCcccCCcCCccCCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCcccc-CCCCCccccc
Q 046467           80 GSVIGVSLLWYE-NDNIIGELGRFKFSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTG-KLPNFTVTYY  157 (183)
Q Consensus        80 ~~v~~L~l~~l~-~g~l~~~~g~l~~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G-~iP~~l~~l~  157 (183)
                      ..++.|++.+.. .+..|..     ++++++|++|++++|. +++..|..++++++|++|++++|.+++ .+|..+++++
T Consensus        80 ~~L~~L~Ls~n~l~~~~p~~-----~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~  153 (606)
T 3vq2_A           80 HHLSNLILTGNPIQSFSPGS-----FSGLTSLENLVAVETK-LASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLT  153 (606)
T ss_dssp             TTCCEEECTTCCCCCCCTTS-----STTCTTCCEEECTTSC-CCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCT
T ss_pred             hhcCEeECCCCcccccChhh-----cCCcccCCEEEccCCc-cccccccccCCCCCCCEEeCCCCcccceechHhHhhcC
Confidence            355666665432 1222323     7888999999999999 987777889999999999999999986 7899999999


Q ss_pred             cccEEEcccCCcccccCC
Q 046467          158 IFYKIVLMLSAGVCFYNA  175 (183)
Q Consensus       158 ~L~~L~L~~n~~~~~~~~  175 (183)
                      +|+.|+|++|++.+..|.
T Consensus       154 ~L~~L~Ls~n~l~~~~~~  171 (606)
T 3vq2_A          154 NLVHVDLSYNYIQTITVN  171 (606)
T ss_dssp             TCCEEECCSSCCCEECTT
T ss_pred             CCCEEEccCCcceecChh
Confidence            999999999998876543

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=98.77  E-value=2.9e-08  Score=80.61  Aligned_cols=68  Identities=19%  Similarity=0.199  Sum_probs=48.1

Q ss_pred             CCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCccccccccEEEcccCCccccc
Q 046467          104 FSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIFYKIVLMLSAGVCFY  173 (183)
Q Consensus       104 ~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~~~~~~  173 (183)
                      +..+++|+.|++++|+ +++..+..+..+++|++|+|++|+++ .+|..+..+++|+.++|++|++.|.+
T Consensus       144 ~~~l~~L~~L~L~~N~-l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C~c  211 (290)
T 1p9a_G          144 LTPTPKLEKLSLANNN-LTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNC  211 (290)
T ss_dssp             TTTCTTCCEEECTTSC-CSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCSG
T ss_pred             cccccCCCEEECCCCc-CCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccCcC
Confidence            4566777777777777 77433334566777777777777777 67777777777788888888877654

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=98.76  E-value=7e-09  Score=75.55  Aligned_cols=85  Identities=18%  Similarity=0.145  Sum_probs=71.5

Q ss_pred             CCEEEEEeCccC-C-CcccCCcCCccCCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCccccc
Q 046467           80 GSVIGVSLLWYE-N-DNIIGELGRFKFSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYY  157 (183)
Q Consensus        80 ~~v~~L~l~~l~-~-g~l~~~~g~l~~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~  157 (183)
                      ..++.|++.+.. . +.+|..     +..+++|++|++++|. +++.  ..++.+++|++|++++|.+++.+|..+.+++
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~-----~~~l~~L~~L~l~~n~-l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~   88 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGL-----TDEFEELEFLSTINVG-LTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCP   88 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSC-----CTTCTTCCEEECTTSC-CCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCT
T ss_pred             ccCeEEEccCCcCChhHHHHH-----HhhcCCCcEEECcCCC-CCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCC
Confidence            456777777543 2 355544     6788999999999999 9976  7789999999999999999998998888899


Q ss_pred             cccEEEcccCCcccc
Q 046467          158 IFYKIVLMLSAGVCF  172 (183)
Q Consensus       158 ~L~~L~L~~n~~~~~  172 (183)
                      +|+.|++++|++.+.
T Consensus        89 ~L~~L~ls~N~i~~~  103 (149)
T 2je0_A           89 NLTHLNLSGNKIKDL  103 (149)
T ss_dssp             TCCEEECTTSCCCSH
T ss_pred             CCCEEECCCCcCCCh
Confidence            999999999998763

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=98.75  E-value=1.3e-08  Score=76.40  Aligned_cols=83  Identities=14%  Similarity=0.157  Sum_probs=62.7

Q ss_pred             CEEEEEeCccCCCcccCCcCCccCCCCCCCcEEeccCCCCccccCCcc-ccCCCCCCEEEccCCccccCCCC--Cccccc
Q 046467           81 SVIGVSLLWYENDNIIGELGRFKFSCFPNLRSFKIRSNYLLSGSIPSE-ITVLSTIRTLELTSNNLTGKLPN--FTVTYY  157 (183)
Q Consensus        81 ~v~~L~l~~l~~g~l~~~~g~l~~~~l~~L~~L~ls~N~~l~G~iP~~-~~~l~~L~~L~Ls~N~l~G~iP~--~l~~l~  157 (183)
                      .++.|++.+..-..+ ..     +..+++|++|++++|. +++ +|+. +..+++|++|++++|+++ .+|.  .+..++
T Consensus        43 ~L~~L~Ls~N~l~~~-~~-----l~~l~~L~~L~Ls~N~-l~~-~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~  113 (176)
T 1a9n_A           43 QFDAIDFSDNEIRKL-DG-----FPLLRRLKTLLVNNNR-ICR-IGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLK  113 (176)
T ss_dssp             CCSEEECCSSCCCEE-CC-----CCCCSSCCEEECCSSC-CCE-ECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCT
T ss_pred             CCCEEECCCCCCCcc-cc-----cccCCCCCEEECCCCc-ccc-cCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCC
Confidence            567777764322222 12     7788899999999999 886 4544 488999999999999995 6776  788899


Q ss_pred             cccEEEcccCCcccc
Q 046467          158 IFYKIVLMLSAGVCF  172 (183)
Q Consensus       158 ~L~~L~L~~n~~~~~  172 (183)
                      +|+.|++++|++...
T Consensus       114 ~L~~L~l~~N~i~~~  128 (176)
T 1a9n_A          114 SLTYLCILRNPVTNK  128 (176)
T ss_dssp             TCCEEECCSSGGGGS
T ss_pred             CCCEEEecCCCCCCc
Confidence            999999999988643

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=98.75  E-value=8.3e-09  Score=90.86  Aligned_cols=69  Identities=22%  Similarity=0.244  Sum_probs=52.1

Q ss_pred             CCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCccccccccEEEcccCCcccccC
Q 046467          104 FSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIFYKIVLMLSAGVCFYN  174 (183)
Q Consensus       104 ~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~~~~~~~  174 (183)
                      +..+++|+.|++++|+ +++..|..+.+++.| +|++++|++++.+|..+..+++|+.|++++|++.|.++
T Consensus       496 ~~~l~~L~~L~Ls~N~-l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  564 (606)
T 3t6q_A          496 FTSLKMMNHVDLSHNR-LTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCS  564 (606)
T ss_dssp             TTTCTTCCEEECCSSC-CCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred             hccccCCCEEECCCCc-cCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCC
Confidence            5667777777777777 777777777777777 77777777777666667777788888888888877655

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=98.75  E-value=4.1e-08  Score=80.36  Aligned_cols=66  Identities=18%  Similarity=0.173  Sum_probs=58.9

Q ss_pred             CCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCccccccccEEEcccCCccc
Q 046467          104 FSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIFYKIVLMLSAGVC  171 (183)
Q Consensus       104 ~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~~~~  171 (183)
                      +..+++|++|++++|. +++..+..+..+++|++|++++|+++ .+|..+..+++|+.|+|++|++.+
T Consensus       212 ~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~  277 (330)
T 1xku_A          212 LKGLNNLAKLGLSFNS-ISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISA  277 (330)
T ss_dssp             GTTCTTCCEEECCSSC-CCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCC
T ss_pred             hcCCCCCCEEECCCCc-CceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCc
Confidence            7788899999999999 99877778889999999999999998 889889999999999999998874

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=98.75  E-value=1.6e-08  Score=87.96  Aligned_cols=68  Identities=18%  Similarity=0.246  Sum_probs=61.8

Q ss_pred             CCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCccccccccEEEcccCCcccccC
Q 046467          104 FSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIFYKIVLMLSAGVCFYN  174 (183)
Q Consensus       104 ~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~~~~~~~  174 (183)
                      +..+++|++|++++|+ ++ .||. ...+++|++|++++|++++.+|..+.++++|+.|+|++|++.|.+|
T Consensus       447 ~~~l~~L~~L~Ls~N~-l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  514 (549)
T 2z81_A          447 SLFLPRLQELYISRNK-LK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  514 (549)
T ss_dssp             CCCCTTCCEEECCSSC-CS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred             cccCChhcEEECCCCc-cC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence            3478899999999999 98 7887 5779999999999999999888889999999999999999999876

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=98.75  E-value=2e-08  Score=88.13  Aligned_cols=92  Identities=12%  Similarity=0.103  Sum_probs=73.7

Q ss_pred             ccceeCCCCCEEEEEeCccCCCccc-CCcCCccCCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCC
Q 046467           72 TGISCNSAGSVIGVSLLWYENDNII-GELGRFKFSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLP  150 (183)
Q Consensus        72 ~gv~C~~~~~v~~L~l~~l~~g~l~-~~~g~l~~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP  150 (183)
                      .++..+-...++.|++.+..-..++ ..     +.++++|++|++++|+ +++..|..+.++++|++|++++|+++ .+|
T Consensus        44 ~~ip~~~~~~L~~L~Ls~N~i~~~~~~~-----~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp  116 (562)
T 3a79_B           44 THVPKDLPPRTKALSLSQNSISELRMPD-----ISFLSELRVLRLSHNR-IRSLDFHVFLFNQDLEYLDVSHNRLQ-NIS  116 (562)
T ss_dssp             CSCCTTSCTTCCEEECCSSCCCCCCGGG-----TTTCTTCCEEECCSCC-CCEECTTTTTTCTTCCEEECTTSCCC-EEC
T ss_pred             ccCCCCCCCCcCEEECCCCCccccChhh-----hccCCCccEEECCCCC-CCcCCHHHhCCCCCCCEEECCCCcCC-ccC
Confidence            3343333367888888754322222 22     7889999999999999 99988999999999999999999999 789


Q ss_pred             CCccccccccEEEcccCCcccc
Q 046467          151 NFTVTYYIFYKIVLMLSAGVCF  172 (183)
Q Consensus       151 ~~l~~l~~L~~L~L~~n~~~~~  172 (183)
                      ..  .+++|++|+|++|++...
T Consensus       117 ~~--~l~~L~~L~Ls~N~l~~l  136 (562)
T 3a79_B          117 CC--PMASLRHLDLSFNDFDVL  136 (562)
T ss_dssp             SC--CCTTCSEEECCSSCCSBC
T ss_pred             cc--ccccCCEEECCCCCcccc
Confidence            87  899999999999998863

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.75  E-value=1.6e-08  Score=88.00  Aligned_cols=62  Identities=19%  Similarity=0.139  Sum_probs=35.5

Q ss_pred             CCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCccccccccEEEcccCCccc
Q 046467          106 CFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIFYKIVLMLSAGVC  171 (183)
Q Consensus       106 ~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~~~~  171 (183)
                      .+++|+.|++++|. +++. | .+..+++|++|+|++|.+++ +|+.+..+++|+.|+|++|++.+
T Consensus       167 ~l~~L~~L~Ls~N~-l~~~-~-~~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~~  228 (487)
T 3oja_A          167 SSDTLEHLNLQYNF-IYDV-K-GQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVL  228 (487)
T ss_dssp             GTTTCCEEECTTSC-CCEE-E-CCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCE
T ss_pred             hCCcccEEecCCCc-cccc-c-ccccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCcc
Confidence            34444555555554 4443 1 12235666666666666665 44446677777777777777665

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=98.74  E-value=3.7e-08  Score=86.42  Aligned_cols=83  Identities=13%  Similarity=0.065  Sum_probs=68.9

Q ss_pred             CCEEEEEeCccCCCcc-cCCcCCccCCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCcccc-CCCCCccccc
Q 046467           80 GSVIGVSLLWYENDNI-IGELGRFKFSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTG-KLPNFTVTYY  157 (183)
Q Consensus        80 ~~v~~L~l~~l~~g~l-~~~~g~l~~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G-~iP~~l~~l~  157 (183)
                      ..++.|++.+..-..+ |..     +..+++|++|++++|+ ++ .+|..  .+++|++|++++|++++ ++|..+++++
T Consensus        76 ~~L~~L~Ls~N~l~~~~~~~-----~~~l~~L~~L~Ls~N~-l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~  146 (562)
T 3a79_B           76 SELRVLRLSHNRIRSLDFHV-----FLFNQDLEYLDVSHNR-LQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLT  146 (562)
T ss_dssp             TTCCEEECCSCCCCEECTTT-----TTTCTTCCEEECTTSC-CC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCT
T ss_pred             CCccEEECCCCCCCcCCHHH-----hCCCCCCCEEECCCCc-CC-ccCcc--ccccCCEEECCCCCccccCchHhhcccC
Confidence            4678888875432222 222     7889999999999999 99 68887  89999999999999997 6788999999


Q ss_pred             cccEEEcccCCccc
Q 046467          158 IFYKIVLMLSAGVC  171 (183)
Q Consensus       158 ~L~~L~L~~n~~~~  171 (183)
                      +|++|+|++|++..
T Consensus       147 ~L~~L~L~~n~l~~  160 (562)
T 3a79_B          147 KLTFLGLSAAKFRQ  160 (562)
T ss_dssp             TCCEEEEECSBCCT
T ss_pred             cccEEecCCCcccc
Confidence            99999999999874

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=98.74  E-value=2e-08  Score=86.09  Aligned_cols=70  Identities=16%  Similarity=0.145  Sum_probs=57.7

Q ss_pred             CCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCccccccccEEEcccCCcccccC
Q 046467          104 FSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIFYKIVLMLSAGVCFYN  174 (183)
Q Consensus       104 ~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~~~~~~~  174 (183)
                      +..+++|+.|++++|+ +++..|..+..+++|++|+|++|++++..+..+.++++|+.|+|++|++.|.++
T Consensus       268 ~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~  337 (477)
T 2id5_A          268 LHELLRLQEIQLVGGQ-LAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCR  337 (477)
T ss_dssp             CTTCTTCCEEECCSSC-CSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGG
T ss_pred             ccccccCCEEECCCCc-cceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccc
Confidence            6677888888888888 888888888888889999999988887555567888889999999998887543

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=98.74  E-value=8.5e-09  Score=89.30  Aligned_cols=86  Identities=14%  Similarity=0.049  Sum_probs=71.4

Q ss_pred             CCEEEEEeCccCCCccc-CCcCCccCCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCcccccc
Q 046467           80 GSVIGVSLLWYENDNII-GELGRFKFSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYI  158 (183)
Q Consensus        80 ~~v~~L~l~~l~~g~l~-~~~g~l~~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~  158 (183)
                      ..++.|++.+..-..++ ..     +..+++|++|++++|+ +++..|..++++++|++|++++|+++ .+|..  .+++
T Consensus        21 ~~L~~L~Ls~n~i~~~~~~~-----~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~   91 (520)
T 2z7x_B           21 QKTTILNISQNYISELWTSD-----ILSLSKLRILIISHNR-IQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVN   91 (520)
T ss_dssp             TTCSEEECCSSCCCCCCHHH-----HTTCTTCCEEECCSSC-CCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCC
T ss_pred             ccccEEECCCCcccccChhh-----ccccccccEEecCCCc-cCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCC
Confidence            57888888754222222 22     7889999999999999 99988999999999999999999999 68887  8999


Q ss_pred             ccEEEcccCCccc-ccC
Q 046467          159 FYKIVLMLSAGVC-FYN  174 (183)
Q Consensus       159 L~~L~L~~n~~~~-~~~  174 (183)
                      |++|+|++|++.+ .+|
T Consensus        92 L~~L~L~~N~l~~~~~p  108 (520)
T 2z7x_B           92 LKHLDLSFNAFDALPIC  108 (520)
T ss_dssp             CSEEECCSSCCSSCCCC
T ss_pred             ccEEeccCCccccccch
Confidence            9999999999987 344

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=98.74  E-value=1.7e-08  Score=87.95  Aligned_cols=70  Identities=16%  Similarity=0.186  Sum_probs=56.3

Q ss_pred             CCCCCCCcEEeccCCCCcc-ccCCccccCCCCCCEEEccCCccccCCCCCccccccccEEEcccCCcccccC
Q 046467          104 FSCFPNLRSFKIRSNYLLS-GSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIFYKIVLMLSAGVCFYN  174 (183)
Q Consensus       104 ~~~l~~L~~L~ls~N~~l~-G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~~~~~~~  174 (183)
                      +..+++|++|++++|. ++ +.+|..+..+++|++|++++|++++..|..+.++++|+.|+|++|++.+..|
T Consensus       441 ~~~l~~L~~L~l~~n~-l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  511 (570)
T 2z63_A          441 FNGLSSLEVLKMAGNS-FQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPD  511 (570)
T ss_dssp             TTTCTTCCEEECTTCE-EGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred             hhcCCcCcEEECcCCc-CccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCH
Confidence            5667788888888888 76 6788888888888888888888888778888888888888888888876644

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=98.74  E-value=1.2e-08  Score=90.84  Aligned_cols=97  Identities=15%  Similarity=0.123  Sum_probs=54.1

Q ss_pred             CCCCCC-----ccccc-eeCCCCCEEEEEeCccCCCcccCCc--------------CCccCCCCCCCcEEeccCCCCccc
Q 046467           64 YTSDHC-----KWTGI-SCNSAGSVIGVSLLWYENDNIIGEL--------------GRFKFSCFPNLRSFKIRSNYLLSG  123 (183)
Q Consensus        64 ~~~~~C-----~w~gv-~C~~~~~v~~L~l~~l~~g~l~~~~--------------g~l~~~~l~~L~~L~ls~N~~l~G  123 (183)
                      ...++|     .|.++ .|.. .+++.|++.+.+-..+|..+              ..+| ..+++|++|++++|+ +++
T Consensus        38 ~~~~~~~~~~~~~~~l~~C~~-~~L~~L~Ls~n~L~~lp~~l~~~L~~L~Ls~N~l~~ip-~~l~~L~~L~Ls~N~-l~~  114 (571)
T 3cvr_A           38 KQALPGENRNEAVSLLKECLI-NQFSELQLNRLNLSSLPDNLPPQITVLEITQNALISLP-ELPASLEYLDACDNR-LST  114 (571)
T ss_dssp             TTCCTTCCHHHHHHHHHHHHH-TTCSEEECCSSCCSCCCSCCCTTCSEEECCSSCCSCCC-CCCTTCCEEECCSSC-CSC
T ss_pred             ccCCccccccchhhhcccccc-CCccEEEeCCCCCCccCHhHcCCCCEEECcCCCCcccc-cccCCCCEEEccCCC-CCC
Confidence            345677     68888 6753 57888888754333355432              1122 234555555555555 554


Q ss_pred             cCCccccCCCCCCEEEccCCccccCCCCCccccccccEEEcccCCccc
Q 046467          124 SIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIFYKIVLMLSAGVC  171 (183)
Q Consensus       124 ~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~~~~  171 (183)
                       +|. +.+  +|++|++++|++++ ||.   .+++|+.|+|++|++.+
T Consensus       115 -ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~  154 (571)
T 3cvr_A          115 -LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM  154 (571)
T ss_dssp             -CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC
T ss_pred             -cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc
Confidence             555 433  55556666555554 554   45556666666665554

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=98.73  E-value=3e-08  Score=77.71  Aligned_cols=68  Identities=18%  Similarity=0.171  Sum_probs=31.6

Q ss_pred             CCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccC-CccccCCCCCccccccccEEEcccCCccc
Q 046467          104 FSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTS-NNLTGKLPNFTVTYYIFYKIVLMLSAGVC  171 (183)
Q Consensus       104 ~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~-N~l~G~iP~~l~~l~~L~~L~L~~n~~~~  171 (183)
                      +..+++|++|++++|+.+++..+..+.++++|++|++++ |++++..|..+.++++|+.|++++|++.+
T Consensus        51 ~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~  119 (239)
T 2xwt_C           51 FSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM  119 (239)
T ss_dssp             TTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCS
T ss_pred             ccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc
Confidence            444455555555555203322222444555555555554 55553333444455555555555554444

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=98.72  E-value=5e-08  Score=79.87  Aligned_cols=97  Identities=18%  Similarity=0.231  Sum_probs=70.6

Q ss_pred             CCccccceeCCC----------CCEEEEEeCccCCCcccCCcCCccCCCCCCCcEEeccCCCCccccCCccccCCCCCCE
Q 046467           68 HCKWTGISCNSA----------GSVIGVSLLWYENDNIIGELGRFKFSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRT  137 (183)
Q Consensus        68 ~C~w~gv~C~~~----------~~v~~L~l~~l~~g~l~~~~g~l~~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~  137 (183)
                      .|.|..+.|...          ..++.|++.+..-..+++.    .+.++++|++|++++|. +++..|..++++++|++
T Consensus        30 ~c~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~~~----~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~  104 (330)
T 1xku_A           30 QCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDG----DFKNLKNLHTLILINNK-ISKISPGAFAPLVKLER  104 (330)
T ss_dssp             EEETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTT----TTTTCTTCCEEECCSSC-CCCBCTTTTTTCTTCCE
T ss_pred             cCCCeEEEecCCCccccCccCCCCCeEEECCCCcCCEeChh----hhccCCCCCEEECCCCc-CCeeCHHHhcCCCCCCE
Confidence            457777777531          2456677664322222211    16788889999999998 88877888889999999


Q ss_pred             EEccCCccccCCCCCccccccccEEEcccCCcccc
Q 046467          138 LELTSNNLTGKLPNFTVTYYIFYKIVLMLSAGVCF  172 (183)
Q Consensus       138 L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~~~~~  172 (183)
                      |++++|+++ .+|..+.  ++|+.|++++|++.+.
T Consensus       105 L~Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~  136 (330)
T 1xku_A          105 LYLSKNQLK-ELPEKMP--KTLQELRVHENEITKV  136 (330)
T ss_dssp             EECCSSCCS-BCCSSCC--TTCCEEECCSSCCCBB
T ss_pred             EECCCCcCC-ccChhhc--ccccEEECCCCccccc
Confidence            999999888 6887665  7899999988887754

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.70  E-value=4.7e-08  Score=86.69  Aligned_cols=67  Identities=18%  Similarity=0.111  Sum_probs=34.6

Q ss_pred             CCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCccccccccEEEcccCCccc
Q 046467          104 FSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIFYKIVLMLSAGVC  171 (183)
Q Consensus       104 ~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~~~~  171 (183)
                      ++.+++|++|++++|. +++..+..++++++|++|+|++|.+++..|..++++++|+.|+|++|++.+
T Consensus       119 ~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~  185 (597)
T 3oja_B          119 FQNVPLLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH  185 (597)
T ss_dssp             TTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSB
T ss_pred             HcCCCCCCEEEeeCCC-CCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCC
Confidence            3455555555555555 553222223555555555555555555555555555555555555555543

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=98.70  E-value=5.3e-08  Score=83.00  Aligned_cols=68  Identities=15%  Similarity=0.098  Sum_probs=60.0

Q ss_pred             CCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCccccccccEEEcccCCcccc
Q 046467          104 FSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIFYKIVLMLSAGVCF  172 (183)
Q Consensus       104 ~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~~~~~  172 (183)
                      +..+++|+.|++++|. +++..|..+.++++|++|++++|++++..|..+.++++|+.|+|++|++...
T Consensus       203 ~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  270 (440)
T 3zyj_A          203 LTPLIKLDELDLSGNH-LSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLL  270 (440)
T ss_dssp             CTTCSSCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCC
T ss_pred             cCCCcccCEEECCCCc-cCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCcc
Confidence            5677888899999998 9988888899999999999999999988888899999999999999988854

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=98.70  E-value=3.7e-08  Score=87.94  Aligned_cols=68  Identities=18%  Similarity=0.186  Sum_probs=42.5

Q ss_pred             CCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCccccccccEEEcccCCcccc
Q 046467          104 FSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIFYKIVLMLSAGVCF  172 (183)
Q Consensus       104 ~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~~~~~  172 (183)
                      +.++++|++|++++|. +++..|..++++++|++|++++|.+++..|..++++++|+.|+++.|++.+.
T Consensus        93 ~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~  160 (680)
T 1ziw_A           93 FAFCTNLTELHLMSNS-IQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQAL  160 (680)
T ss_dssp             TTTCTTCSEEECCSSC-CCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCB
T ss_pred             hccCCCCCEEECCCCc-cCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCccccc
Confidence            4556666666666666 6654445566666666666666666666666666666666666666665544

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=98.70  E-value=3.9e-08  Score=73.77  Aligned_cols=83  Identities=12%  Similarity=0.091  Sum_probs=64.9

Q ss_pred             CCEEEEEeCccCCCcccCCcCCccCCCC-CCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCc-cccc
Q 046467           80 GSVIGVSLLWYENDNIIGELGRFKFSCF-PNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFT-VTYY  157 (183)
Q Consensus        80 ~~v~~L~l~~l~~g~l~~~~g~l~~~~l-~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l-~~l~  157 (183)
                      ..++.|++.+..-..++ .     +..+ ++|++|++++|. +++.  +.+..+++|++|++++|.+++ +|+.+ ..++
T Consensus        19 ~~L~~L~l~~n~l~~i~-~-----~~~~~~~L~~L~Ls~N~-l~~~--~~l~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~   88 (176)
T 1a9n_A           19 VRDRELDLRGYKIPVIE-N-----LGATLDQFDAIDFSDNE-IRKL--DGFPLLRRLKTLLVNNNRICR-IGEGLDQALP   88 (176)
T ss_dssp             TSCEEEECTTSCCCSCC-C-----GGGGTTCCSEEECCSSC-CCEE--CCCCCCSSCCEEECCSSCCCE-ECSCHHHHCT
T ss_pred             CCceEEEeeCCCCchhH-H-----hhhcCCCCCEEECCCCC-CCcc--cccccCCCCCEEECCCCcccc-cCcchhhcCC
Confidence            46778888754222332 2     3344 499999999999 9975  678999999999999999996 56555 8999


Q ss_pred             cccEEEcccCCcccc
Q 046467          158 IFYKIVLMLSAGVCF  172 (183)
Q Consensus       158 ~L~~L~L~~n~~~~~  172 (183)
                      +|+.|+|++|++...
T Consensus        89 ~L~~L~L~~N~i~~~  103 (176)
T 1a9n_A           89 DLTELILTNNSLVEL  103 (176)
T ss_dssp             TCCEEECCSCCCCCG
T ss_pred             CCCEEECCCCcCCcc
Confidence            999999999998543

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=98.70  E-value=5.4e-08  Score=77.71  Aligned_cols=69  Identities=20%  Similarity=0.246  Sum_probs=59.6

Q ss_pred             CCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCcccc-CCCCCccccccccEEEcccCCccccc
Q 046467          104 FSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTG-KLPNFTVTYYIFYKIVLMLSAGVCFY  173 (183)
Q Consensus       104 ~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G-~iP~~l~~l~~L~~L~L~~n~~~~~~  173 (183)
                      +..+++|++|++++|+ +++..+..++.+++|++|++++|++++ .+|..++++++|+.|+|++|++.+..
T Consensus        96 ~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~  165 (276)
T 2z62_A           96 FSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY  165 (276)
T ss_dssp             TTTCTTCCEEECTTSC-CCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEEC
T ss_pred             hcCCccccEEECCCCC-ccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCC
Confidence            6788899999999999 887666678899999999999999987 57888999999999999999887643

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=98.68  E-value=7.8e-08  Score=80.46  Aligned_cols=66  Identities=21%  Similarity=0.208  Sum_probs=41.6

Q ss_pred             CCCCCCCcEEeccCCCCccccCCcc-ccCCCCCCEEEccCCccccCCCCCccccccccEEEcccCCccc
Q 046467          104 FSCFPNLRSFKIRSNYLLSGSIPSE-ITVLSTIRTLELTSNNLTGKLPNFTVTYYIFYKIVLMLSAGVC  171 (183)
Q Consensus       104 ~~~l~~L~~L~ls~N~~l~G~iP~~-~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~~~~  171 (183)
                      +..+++|++|++++|. ++ .+|.. +.++++|++|++++|++++..|..+.++++|+.|++++|++..
T Consensus       113 ~~~l~~L~~L~L~~n~-l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  179 (390)
T 3o6n_A          113 FQNVPLLTVLVLERND-LS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH  179 (390)
T ss_dssp             TTTCTTCCEEECCSSC-CC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSB
T ss_pred             hcCCCCCCEEECCCCc-cC-cCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCc
Confidence            4556666666666666 66 34443 4666666666666666666555566666666666666666654

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=98.65  E-value=7.1e-08  Score=86.12  Aligned_cols=70  Identities=19%  Similarity=0.104  Sum_probs=38.6

Q ss_pred             CCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCcc--ccccccEEEcccCCcccccC
Q 046467          104 FSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTV--TYYIFYKIVLMLSAGVCFYN  174 (183)
Q Consensus       104 ~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~--~l~~L~~L~L~~n~~~~~~~  174 (183)
                      ++++++|++|++++|. +++..|..++++++|++|++++|++++..|..+.  .+++|+.|+++.|++.+..|
T Consensus       117 ~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~  188 (680)
T 1ziw_A          117 FVKQKNLITLDLSHNG-LSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSP  188 (680)
T ss_dssp             TTTCTTCCEEECCSSC-CSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCT
T ss_pred             ccccCCCCEEECCCCc-ccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccCh
Confidence            4455556666666665 5555555555566666666666665554444332  33556666666555554433

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.65  E-value=1.7e-08  Score=87.73  Aligned_cols=67  Identities=13%  Similarity=0.120  Sum_probs=44.6

Q ss_pred             CCCCCCCcEEeccCCCCccccCCcccc-CCCCCCEEEccCCccccCCCCCccccccccEEEcccCCccccc
Q 046467          104 FSCFPNLRSFKIRSNYLLSGSIPSEIT-VLSTIRTLELTSNNLTGKLPNFTVTYYIFYKIVLMLSAGVCFY  173 (183)
Q Consensus       104 ~~~l~~L~~L~ls~N~~l~G~iP~~~~-~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~~~~~~  173 (183)
                      ++.+++|++|++++|. +++.+|..+. .+++|++|+|++|.+++. |. +..+++|+.|+|++|++.+..
T Consensus       140 ~~~l~~L~~L~Ls~N~-l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~~~  207 (487)
T 3oja_A          140 EGCRSRVQYLDLKLNE-IDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAFMG  207 (487)
T ss_dssp             GGGGSSEEEEECTTSC-CCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCEEC
T ss_pred             hcCCCCCCEEECCCCC-CCCcChHHHhhhCCcccEEecCCCccccc-cc-cccCCCCCEEECCCCCCCCCC
Confidence            5556677777777777 7776666664 567777777777777654 22 335777777777777776543

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=98.64  E-value=3.8e-08  Score=80.14  Aligned_cols=83  Identities=8%  Similarity=0.009  Sum_probs=46.6

Q ss_pred             EEEEEeCccC-CCcccCCcCCccC--CCCCCCcEEeccCCCCccccCC----ccccCCCCCCEEEccCCccccCCCCCcc
Q 046467           82 VIGVSLLWYE-NDNIIGELGRFKF--SCFPNLRSFKIRSNYLLSGSIP----SEITVLSTIRTLELTSNNLTGKLPNFTV  154 (183)
Q Consensus        82 v~~L~l~~l~-~g~l~~~~g~l~~--~~l~~L~~L~ls~N~~l~G~iP----~~~~~l~~L~~L~Ls~N~l~G~iP~~l~  154 (183)
                      ++.|++.+.+ .+..|..     +  ..+++|++|++++|. +++.+|    ..+..+++|++|++++|.+++..|..++
T Consensus        93 L~~L~l~~n~l~~~~~~~-----~~~~~~~~L~~L~Ls~n~-i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~  166 (310)
T 4glp_A           93 LKELTLEDLKITGTMPPL-----PLEATGLALSSLRLRNVS-WATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVR  166 (310)
T ss_dssp             CCEEEEESCCCBSCCCCC-----SSSCCCBCCSSCEEESCC-CSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCC
T ss_pred             eeEEEeeCCEeccchhhh-----hhhccCCCCCEEEeeccc-ccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhc
Confidence            5666665432 2333322     2  555666666666666 665444    2234566666666666666655555666


Q ss_pred             ccccccEEEcccCCcc
Q 046467          155 TYYIFYKIVLMLSAGV  170 (183)
Q Consensus       155 ~l~~L~~L~L~~n~~~  170 (183)
                      ++++|++|+|++|++.
T Consensus       167 ~l~~L~~L~Ls~N~l~  182 (310)
T 4glp_A          167 AFPALTSLDLSDNPGL  182 (310)
T ss_dssp             CCTTCCEEECCSCTTC
T ss_pred             cCCCCCEEECCCCCCc
Confidence            6666666666666654

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=98.63  E-value=6.8e-08  Score=89.00  Aligned_cols=101  Identities=15%  Similarity=0.199  Sum_probs=83.8

Q ss_pred             CccccceeCCCCCEEEEEeCccCCCc-ccCCcCCccCCCCCCCcEEeccCCCCccccC-CccccCCCCCCEEEccCCccc
Q 046467           69 CKWTGISCNSAGSVIGVSLLWYENDN-IIGELGRFKFSCFPNLRSFKIRSNYLLSGSI-PSEITVLSTIRTLELTSNNLT  146 (183)
Q Consensus        69 C~w~gv~C~~~~~v~~L~l~~l~~g~-l~~~~g~l~~~~l~~L~~L~ls~N~~l~G~i-P~~~~~l~~L~~L~Ls~N~l~  146 (183)
                      |.|..|.+ -...++.|++++..-.. .+..     +.++++|++|++++|. +.+.+ |..+.++++|++|+|++|+++
T Consensus        14 ~~L~~vP~-lp~~l~~LdLs~N~i~~i~~~~-----~~~l~~L~~LdLs~n~-~~~~i~~~~f~~L~~L~~L~Ls~N~l~   86 (844)
T 3j0a_A           14 CNLTQVPQ-VLNTTERLLLSFNYIRTVTASS-----FPFLEQLQLLELGSQY-TPLTIDKEAFRNLPNLRILDLGSSKIY   86 (844)
T ss_dssp             CCSSCCCS-SCTTCCEEEEESCCCCEECSSS-----CSSCCSCSEEEECTTC-CCCEECTTTTSSCTTCCEEECTTCCCC
T ss_pred             CCCCCCCC-CCCCcCEEECCCCcCCccChhH-----CcccccCeEEeCCCCC-CccccCHHHhcCCCCCCEEECCCCcCc
Confidence            45677776 55788999998542222 2223     8899999999999998 88888 678999999999999999999


Q ss_pred             cCCCCCccccccccEEEcccCCcccccCCc
Q 046467          147 GKLPNFTVTYYIFYKIVLMLSAGVCFYNAE  176 (183)
Q Consensus       147 G~iP~~l~~l~~L~~L~L~~n~~~~~~~~e  176 (183)
                      +..|..++++++|++|+|++|++.+.+|.+
T Consensus        87 ~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~  116 (844)
T 3j0a_A           87 FLHPDAFQGLFHLFELRLYFCGLSDAVLKD  116 (844)
T ss_dssp             EECTTSSCSCSSCCCEECTTCCCSSCCSTT
T ss_pred             ccCHhHccCCcccCEeeCcCCCCCcccccC
Confidence            999999999999999999999999876654

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=98.60  E-value=4.2e-08  Score=79.93  Aligned_cols=63  Identities=14%  Similarity=0.066  Sum_probs=40.4

Q ss_pred             CCCCCcEEeccCCCCccccCCccccCC---CCCCEEEccCCccccCCCCCccccccccEEEcccCCcccc
Q 046467          106 CFPNLRSFKIRSNYLLSGSIPSEITVL---STIRTLELTSNNLTGKLPNFTVTYYIFYKIVLMLSAGVCF  172 (183)
Q Consensus       106 ~l~~L~~L~ls~N~~l~G~iP~~~~~l---~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~~~~~  172 (183)
                      .+++|++|++++|+ +++.+|+.+..+   ++|++|++++|+++ .+|..+.  ++|+.|+|++|++.+.
T Consensus       222 ~l~~L~~L~Ls~N~-l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~  287 (310)
T 4glp_A          222 AGVQPHSLDLSHNS-LRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA  287 (310)
T ss_dssp             HTCCCSSEECTTSC-CCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC
T ss_pred             cCCCCCEEECCCCC-CCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC
Confidence            44666666666666 666666666555   46666666666666 5666554  5666677766666653

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=98.60  E-value=1.5e-07  Score=77.22  Aligned_cols=87  Identities=13%  Similarity=0.022  Sum_probs=70.6

Q ss_pred             EEEEEeCccCCCcccCCcCCccCCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCccccccccE
Q 046467           82 VIGVSLLWYENDNIIGELGRFKFSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIFYK  161 (183)
Q Consensus        82 v~~L~l~~l~~g~l~~~~g~l~~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~  161 (183)
                      ++.+++.+.+-..+|..       -.++|++|++++|. +++..|..+.++++|++|++++|++++..|..++++++|++
T Consensus        35 l~~l~~~~~~l~~ip~~-------~~~~l~~L~l~~n~-i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  106 (332)
T 2ft3_A           35 LRVVQCSDLGLKAVPKE-------ISPDTTLLDLQNND-ISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQK  106 (332)
T ss_dssp             TTEEECCSSCCSSCCSC-------CCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCE
T ss_pred             CCEEECCCCCccccCCC-------CCCCCeEEECCCCc-CCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCE
Confidence            34566654423345533       23689999999999 99877889999999999999999999988999999999999


Q ss_pred             EEcccCCcccccCCcc
Q 046467          162 IVLMLSAGVCFYNAEE  177 (183)
Q Consensus       162 L~L~~n~~~~~~~~e~  177 (183)
                      |+|++|++. .+|.+.
T Consensus       107 L~L~~n~l~-~l~~~~  121 (332)
T 2ft3_A          107 LYISKNHLV-EIPPNL  121 (332)
T ss_dssp             EECCSSCCC-SCCSSC
T ss_pred             EECCCCcCC-ccCccc
Confidence            999999987 555543

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=98.59  E-value=5.5e-08  Score=79.85  Aligned_cols=76  Identities=16%  Similarity=0.116  Sum_probs=59.8

Q ss_pred             CCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCccccccccEEEcccCCcccccCCccccccC
Q 046467          104 FSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIFYKIVLMLSAGVCFYNAEEVCAVR  182 (183)
Q Consensus       104 ~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~~~~~~~~e~~~~~~  182 (183)
                      +..+++|++|++++|. +++.  +.+..+++|++|++++|.+++..|..+.++++|+.|+|++|++.+..|.+....++
T Consensus       261 ~~~l~~L~~L~l~~n~-l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~L~  336 (347)
T 4fmz_A          261 VKDLTKLKMLNVGSNQ-ISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRPLASLSKMD  336 (347)
T ss_dssp             GTTCTTCCEEECCSSC-CCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGGGGGCTTCS
T ss_pred             HhcCCCcCEEEccCCc-cCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccChhhhhccc
Confidence            5677788888888888 7763  45778888888888888888888888888888888888888888877755555544

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=98.58  E-value=3.3e-08  Score=80.71  Aligned_cols=68  Identities=9%  Similarity=0.169  Sum_probs=61.9

Q ss_pred             CCCCCcEEeccCCCCccccCCccc--cCCCCCCEEEccCCccccCCCCCcccc-----ccccEEEcccCCcccccCC
Q 046467          106 CFPNLRSFKIRSNYLLSGSIPSEI--TVLSTIRTLELTSNNLTGKLPNFTVTY-----YIFYKIVLMLSAGVCFYNA  175 (183)
Q Consensus       106 ~l~~L~~L~ls~N~~l~G~iP~~~--~~l~~L~~L~Ls~N~l~G~iP~~l~~l-----~~L~~L~L~~n~~~~~~~~  175 (183)
                      ++++|++|++++|+ ++|.+|..+  ..+++|++|++++|++++. |..++.+     ++|++|+|++|++.+..|.
T Consensus        93 ~l~~L~~L~L~~n~-l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~  167 (312)
T 1wwl_A           93 GISGLQELTLENLE-VTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCE  167 (312)
T ss_dssp             TTSCCCEEEEEEEB-CBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTT
T ss_pred             CcCCccEEEccCCc-ccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHH
Confidence            68999999999999 999999987  8999999999999999987 8888887     9999999999999876543

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=98.55  E-value=2.1e-07  Score=75.41  Aligned_cols=61  Identities=18%  Similarity=0.265  Sum_probs=27.7

Q ss_pred             CCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCccccccccEEEcccCCccc
Q 046467          106 CFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIFYKIVLMLSAGVC  171 (183)
Q Consensus       106 ~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~~~~  171 (183)
                      .+++|+.|++++|. +++.  +.+..+++|++|++++|++++..|  +..+++|+.|+|++|++..
T Consensus       132 ~l~~L~~L~l~~n~-l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~  192 (291)
T 1h6t_A          132 HLPQLESLYLGNNK-ITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD  192 (291)
T ss_dssp             GCTTCCEEECCSSC-CCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB
T ss_pred             CCCCCCEEEccCCc-CCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCC
Confidence            33444444444444 4432  334444444555555554443222  4445555555555554443

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=98.54  E-value=1.4e-07  Score=77.92  Aligned_cols=86  Identities=19%  Similarity=0.167  Sum_probs=48.1

Q ss_pred             CCEEEEEeCccCCCccc-CCcCCccCCCCCCCcEEeccCCCCccccCCcc-ccCCCCCCEEEccCCccccCCCC--Cccc
Q 046467           80 GSVIGVSLLWYENDNII-GELGRFKFSCFPNLRSFKIRSNYLLSGSIPSE-ITVLSTIRTLELTSNNLTGKLPN--FTVT  155 (183)
Q Consensus        80 ~~v~~L~l~~l~~g~l~-~~~g~l~~~~l~~L~~L~ls~N~~l~G~iP~~-~~~l~~L~~L~Ls~N~l~G~iP~--~l~~  155 (183)
                      ..++.|++.+..-..++ ..     +.++++|++|++++|. +++ +|.. ++++++|++|++++|+++ .+|.  .+.+
T Consensus        76 ~~L~~L~L~~n~l~~~~~~~-----~~~l~~L~~L~Ls~n~-l~~-~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~  147 (353)
T 2z80_A           76 VNLQALVLTSNGINTIEEDS-----FSSLGSLEHLDLSYNY-LSN-LSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSH  147 (353)
T ss_dssp             TTCCEEECTTSCCCEECTTT-----TTTCTTCCEEECCSSC-CSS-CCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTT
T ss_pred             CCCCEEECCCCccCccCHhh-----cCCCCCCCEEECCCCc-CCc-CCHhHhCCCccCCEEECCCCCCc-ccCchhhhcc
Confidence            35666666533211221 12     5566666666666666 664 3333 666666666666666666 3444  5566


Q ss_pred             cccccEEEcccCCccccc
Q 046467          156 YYIFYKIVLMLSAGVCFY  173 (183)
Q Consensus       156 l~~L~~L~L~~n~~~~~~  173 (183)
                      +++|+.|++++|+....+
T Consensus       148 l~~L~~L~l~~n~~~~~~  165 (353)
T 2z80_A          148 LTKLQILRVGNMDTFTKI  165 (353)
T ss_dssp             CTTCCEEEEEESSSCCEE
T ss_pred             CCCCcEEECCCCcccccc
Confidence            666666666666533333

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=98.54  E-value=9.7e-08  Score=74.73  Aligned_cols=61  Identities=16%  Similarity=0.245  Sum_probs=34.4

Q ss_pred             CCCCCCCcEEeccC-CCCccccCCccccCCCCCCEEEccCCccccCCCCCcccccccc---EEEcccC
Q 046467          104 FSCFPNLRSFKIRS-NYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIFY---KIVLMLS  167 (183)
Q Consensus       104 ~~~l~~L~~L~ls~-N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~---~L~L~~n  167 (183)
                      +..+++|++|++++ |. +++..+..+..+++|++|++++|.+++ +|. +.++++|+   .|++++|
T Consensus        76 f~~l~~L~~L~l~~~n~-l~~i~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N  140 (239)
T 2xwt_C           76 FYNLSKVTHIEIRNTRN-LTYIDPDALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDN  140 (239)
T ss_dssp             EESCTTCCEEEEEEETT-CCEECTTSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESC
T ss_pred             cCCCcCCcEEECCCCCC-eeEcCHHHhCCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCC
Confidence            44556666666665 66 664444455566666666666666554 554 44444444   5555555

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=98.54  E-value=1.4e-07  Score=78.16  Aligned_cols=101  Identities=16%  Similarity=0.141  Sum_probs=75.7

Q ss_pred             CccccceeCCC----------CCEEEEEeCccCCCcccCCcCCccCCCCCCCcEEeccCCCCccccCCc-cccCCCCCCE
Q 046467           69 CKWTGISCNSA----------GSVIGVSLLWYENDNIIGELGRFKFSCFPNLRSFKIRSNYLLSGSIPS-EITVLSTIRT  137 (183)
Q Consensus        69 C~w~gv~C~~~----------~~v~~L~l~~l~~g~l~~~~g~l~~~~l~~L~~L~ls~N~~l~G~iP~-~~~~l~~L~~  137 (183)
                      |.+..|.|...          ..++.|++.+.+-..+|+.    .|.++++|++|+|++|+ +.+.+|. .|.++++|++
T Consensus         9 C~~~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~----~f~~l~~L~~L~Ls~N~-i~~~i~~~~f~~L~~l~~   83 (350)
T 4ay9_X            9 CSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKG----AFSGFGDLEKIEISQND-VLEVIEADVFSNLPKLHE   83 (350)
T ss_dssp             EETTEEEEESTTCCSCCTTCCTTCSEEEEESCCCSEECTT----SSTTCTTCCEEEEECCT-TCCEECTTSBCSCTTCCE
T ss_pred             eeCCEEEecCCCCCccCcCcCCCCCEEEccCCcCCCcCHH----HHcCCCCCCEEECcCCC-CCCccChhHhhcchhhhh
Confidence            56777888531          2467777775422334322    17889999999999999 9888876 4688888775


Q ss_pred             -EEccCCccccCCCCCccccccccEEEcccCCcccccC
Q 046467          138 -LELTSNNLTGKLPNFTVTYYIFYKIVLMLSAGVCFYN  174 (183)
Q Consensus       138 -L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~~~~~~~  174 (183)
                       ++++.|++++..|..+..+++|++|++++|++....+
T Consensus        84 ~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~  121 (350)
T 4ay9_X           84 IRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPD  121 (350)
T ss_dssp             EEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCC
T ss_pred             hhcccCCcccccCchhhhhccccccccccccccccCCc
Confidence             5667799997777888999999999999999876544

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=98.52  E-value=1.3e-07  Score=77.22  Aligned_cols=65  Identities=17%  Similarity=0.139  Sum_probs=53.5

Q ss_pred             CCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCccccccccEEEcccCCcccc
Q 046467          105 SCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIFYKIVLMLSAGVCF  172 (183)
Q Consensus       105 ~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~~~~~  172 (183)
                      ..+++|++|++++|. +++ +|+.+..+++|++|++++|+++ .+|..+..+++|+.|+|++|++.|.
T Consensus       188 ~~l~~L~~L~Ls~N~-l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~  252 (317)
T 3o53_A          188 VVFAKLKTLDLSSNK-LAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCG  252 (317)
T ss_dssp             CCCTTCCEEECCSSC-CCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHH
T ss_pred             cccccCCEEECCCCc-CCc-chhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCc
Confidence            347888888888888 885 5666888888999999999888 5788888888999999999888854

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=98.52  E-value=4.5e-07  Score=78.17  Aligned_cols=62  Identities=13%  Similarity=0.135  Sum_probs=29.2

Q ss_pred             CCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCccccccccEEEcccCCcccc
Q 046467          104 FSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIFYKIVLMLSAGVCF  172 (183)
Q Consensus       104 ~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~~~~~  172 (183)
                      ++++++|++|++++|+ +++ +|  ++.+++|++|++++|++++ +|  ++++++|+.|++++|+..+.
T Consensus       102 ~~~l~~L~~L~L~~N~-l~~-l~--~~~l~~L~~L~l~~N~l~~-l~--l~~l~~L~~L~l~~n~~~~~  163 (457)
T 3bz5_A          102 VTPLTKLTYLNCDTNK-LTK-LD--VSQNPLLTYLNCARNTLTE-ID--VSHNTQLTELDCHLNKKITK  163 (457)
T ss_dssp             CTTCTTCCEEECCSSC-CSC-CC--CTTCTTCCEEECTTSCCSC-CC--CTTCTTCCEEECTTCSCCCC
T ss_pred             cCCCCcCCEEECCCCc-CCe-ec--CCCCCcCCEEECCCCccce-ec--cccCCcCCEEECCCCCcccc
Confidence            4444555555555555 544 33  4455555555555555554 22  44444444444444433333

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.52  E-value=8e-08  Score=77.94  Aligned_cols=68  Identities=16%  Similarity=0.166  Sum_probs=58.8

Q ss_pred             CCCCCCcEEeccCCCCccc--cCCccccCCCCCCEEEccCCccccCCCCCccccc--cccEEEcccCCcccccCC
Q 046467          105 SCFPNLRSFKIRSNYLLSG--SIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYY--IFYKIVLMLSAGVCFYNA  175 (183)
Q Consensus       105 ~~l~~L~~L~ls~N~~l~G--~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~--~L~~L~L~~n~~~~~~~~  175 (183)
                      .++++|+.|+|++|+ +++  .+|..+..+++|+.|+|++|++++.  .++..+.  +|+.|+|++|++++.+|.
T Consensus       167 ~~l~~L~~L~Ls~N~-l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~  238 (267)
T 3rw6_A          167 ENIPELLSLNLSNNR-LYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRD  238 (267)
T ss_dssp             HHCTTCCEEECTTSC-CCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSS
T ss_pred             hhCCCCCEEECCCCC-CCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCc
Confidence            357899999999999 998  6778888999999999999999975  4566666  999999999999987763

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=98.50  E-value=4.1e-07  Score=78.47  Aligned_cols=43  Identities=23%  Similarity=0.188  Sum_probs=24.9

Q ss_pred             CCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCC
Q 046467          104 FSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLP  150 (183)
Q Consensus       104 ~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP  150 (183)
                      ++.+++|++|++++|+ +++ +|  ++.+++|++|++++|+++|..+
T Consensus       208 l~~l~~L~~L~Ls~N~-l~~-ip--~~~l~~L~~L~l~~N~l~~~~~  250 (457)
T 3bz5_A          208 LNQNIQLTFLDCSSNK-LTE-ID--VTPLTQLTYFDCSVNPLTELDV  250 (457)
T ss_dssp             CTTCTTCSEEECCSSC-CSC-CC--CTTCTTCSEEECCSSCCSCCCC
T ss_pred             cccCCCCCEEECcCCc-ccc-cC--ccccCCCCEEEeeCCcCCCcCH
Confidence            4555566666666666 655 44  5556666666666666665433

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=98.48  E-value=2.6e-07  Score=74.92  Aligned_cols=66  Identities=15%  Similarity=0.130  Sum_probs=39.0

Q ss_pred             CCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCccccccccEEEcccCCcccccC
Q 046467          104 FSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIFYKIVLMLSAGVCFYN  174 (183)
Q Consensus       104 ~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~~~~~~~  174 (183)
                      +..+++|++|++++|+ +++.  +.+..+++|++|++++|++++.  +.+..+++|+.|+|++|++.+..|
T Consensus       108 l~~l~~L~~L~L~~n~-i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~  173 (291)
T 1h6t_A          108 LKDLKKLKSLSLEHNG-ISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP  173 (291)
T ss_dssp             GTTCTTCCEEECTTSC-CCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG
T ss_pred             hccCCCCCEEECCCCc-CCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh
Confidence            4555666666666666 6542  3455666666666666666643  445666666666666666655443

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=98.48  E-value=3.5e-07  Score=74.65  Aligned_cols=40  Identities=8%  Similarity=0.050  Sum_probs=16.5

Q ss_pred             ccCCCCCCEEEccCCccccCCCCCccccccccEEEcccCCcc
Q 046467          129 ITVLSTIRTLELTSNNLTGKLPNFTVTYYIFYKIVLMLSAGV  170 (183)
Q Consensus       129 ~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~~~  170 (183)
                      +..+++|++|++++|.+++ +|. +..+++|+.|+|++|++.
T Consensus       147 l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~  186 (308)
T 1h6u_A          147 LAGLTNLQYLSIGNAQVSD-LTP-LANLSKLTTLKADDNKIS  186 (308)
T ss_dssp             GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCC
T ss_pred             ccCCCCccEEEccCCcCCC-Chh-hcCCCCCCEEECCCCccC
Confidence            3334444444444444442 222 444444444444444443

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=98.48  E-value=2.9e-07  Score=82.34  Aligned_cols=63  Identities=17%  Similarity=0.262  Sum_probs=31.2

Q ss_pred             CCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCccccccccEEEcccCCccc
Q 046467          104 FSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIFYKIVLMLSAGVC  171 (183)
Q Consensus       104 ~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~~~~  171 (183)
                      +..+++|+.|+|++|. +++.  +.+..+++|+.|+|++|.+++..|  +..+++|+.|+|++|++.+
T Consensus       127 l~~l~~L~~L~Ls~N~-l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~  189 (605)
T 1m9s_A          127 LVHLPQLESLYLGNNK-ITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD  189 (605)
T ss_dssp             GGGCTTCSEEECCSSC-CCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB
T ss_pred             ccCCCccCEEECCCCc-cCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCC
Confidence            3344455555555555 4432  344455555555555555554333  4555555555555555544

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=98.47  E-value=3.5e-07  Score=73.18  Aligned_cols=90  Identities=9%  Similarity=0.052  Sum_probs=64.7

Q ss_pred             CCEEEEEeCccCCCcccCCcCCccCCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCccccccc
Q 046467           80 GSVIGVSLLWYENDNIIGELGRFKFSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIF  159 (183)
Q Consensus        80 ~~v~~L~l~~l~~g~l~~~~g~l~~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L  159 (183)
                      ..++.|++.+..-..++    .  +..+++|++|++++|+ +++ +|....  ++|++|++++|++++ +| .+.++++|
T Consensus        63 ~~L~~L~L~~N~i~~~~----~--l~~l~~L~~L~L~~N~-l~~-l~~~~~--~~L~~L~L~~N~l~~-~~-~l~~l~~L  130 (263)
T 1xeu_A           63 TNLKELHLSHNQISDLS----P--LKDLTKLEELSVNRNR-LKN-LNGIPS--ACLSRLFLDNNELRD-TD-SLIHLKNL  130 (263)
T ss_dssp             TTCCEEECCSSCCCCCG----G--GTTCSSCCEEECCSSC-CSC-CTTCCC--SSCCEEECCSSCCSB-SG-GGTTCTTC
T ss_pred             CCCCEEECCCCccCCCh----h--hccCCCCCEEECCCCc-cCC-cCcccc--CcccEEEccCCccCC-Ch-hhcCcccc
Confidence            46777777643212222    1  6788899999999999 886 554333  889999999999986 44 58899999


Q ss_pred             cEEEcccCCcccccCCcccccc
Q 046467          160 YKIVLMLSAGVCFYNAEEVCAV  181 (183)
Q Consensus       160 ~~L~L~~n~~~~~~~~e~~~~~  181 (183)
                      +.|+|++|++.+..+.+.+..+
T Consensus       131 ~~L~Ls~N~i~~~~~l~~l~~L  152 (263)
T 1xeu_A          131 EILSIRNNKLKSIVMLGFLSKL  152 (263)
T ss_dssp             CEEECTTSCCCBCGGGGGCTTC
T ss_pred             cEEECCCCcCCCChHHccCCCC
Confidence            9999999999876433333333

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=98.47  E-value=6.1e-07  Score=79.84  Aligned_cols=57  Identities=16%  Similarity=0.208  Sum_probs=50.7

Q ss_pred             CCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCccccccccEEEcccCCcccccCC
Q 046467          109 NLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIFYKIVLMLSAGVCFYNA  175 (183)
Q Consensus       109 ~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~~~~~~~~  175 (183)
                      +|++|++++|+ +++ +|.   .+++|++|++++|++++ +|.   .+++|+.|+|++|++.+ +|.
T Consensus       121 ~L~~L~Ls~N~-l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~  177 (571)
T 3cvr_A          121 SLKHLDVDNNQ-LTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE  177 (571)
T ss_dssp             TCCEEECCSSC-CSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC
T ss_pred             CCCEEECCCCc-CCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch
Confidence            89999999999 998 887   68999999999999997 887   57899999999999887 544

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.46  E-value=3.3e-09  Score=81.17  Aligned_cols=82  Identities=16%  Similarity=0.115  Sum_probs=56.0

Q ss_pred             CCEEEEEeCccCCCcccCCcCCccCCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCccccccc
Q 046467           80 GSVIGVSLLWYENDNIIGELGRFKFSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIF  159 (183)
Q Consensus        80 ~~v~~L~l~~l~~g~l~~~~g~l~~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L  159 (183)
                      ..++.|++.+..-..+| .     +..+++|++|++++|. ++ .+|..+..+++|++|++++|++++ +| .+..+++|
T Consensus        48 ~~L~~L~ls~n~l~~l~-~-----~~~l~~L~~L~l~~n~-l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L  117 (198)
T 1ds9_A           48 KACKHLALSTNNIEKIS-S-----LSGMENLRILSLGRNL-IK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNL  117 (198)
T ss_dssp             TTCSEEECSEEEESCCC-C-----HHHHTTCCEEEEEEEE-EC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHS
T ss_pred             CCCCEEECCCCCCcccc-c-----cccCCCCCEEECCCCC-cc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCC
Confidence            35666666633212233 2     5566778888888887 77 577767667778888888888875 55 57777888


Q ss_pred             cEEEcccCCccc
Q 046467          160 YKIVLMLSAGVC  171 (183)
Q Consensus       160 ~~L~L~~n~~~~  171 (183)
                      +.|+|++|++..
T Consensus       118 ~~L~l~~N~i~~  129 (198)
T 1ds9_A          118 RVLYMSNNKITN  129 (198)
T ss_dssp             SEEEESEEECCC
T ss_pred             CEEECCCCcCCc
Confidence            888888877764

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=98.46  E-value=3.9e-07  Score=81.53  Aligned_cols=73  Identities=15%  Similarity=0.148  Sum_probs=55.8

Q ss_pred             CCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCccccccccEEEcccCCcccccCCcccccc
Q 046467          104 FSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIFYKIVLMLSAGVCFYNAEEVCAV  181 (183)
Q Consensus       104 ~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~~~~~~~~e~~~~~  181 (183)
                      +..+++|+.|+|++|. +++ + +.+..+++|+.|+|++|.+++.  +.+..+++|+.|+|++|++.+..|...+..+
T Consensus       105 l~~l~~L~~L~Ls~N~-l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L  177 (605)
T 1m9s_A          105 LKDLKKLKSLSLEHNG-ISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVPLAGLTKL  177 (605)
T ss_dssp             STTCTTCCEEECTTSC-CCC-C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGGGTTCTTC
T ss_pred             hccCCCCCEEEecCCC-CCC-C-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchhhccCCCC
Confidence            6677888888888888 875 3 4577888888888888888864  5688888888888888888877664444443

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=98.45  E-value=3.9e-07  Score=74.35  Aligned_cols=91  Identities=19%  Similarity=0.246  Sum_probs=69.5

Q ss_pred             CCEEEEEeCccCCCcccCCcCCccCCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCccccccc
Q 046467           80 GSVIGVSLLWYENDNIIGELGRFKFSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIF  159 (183)
Q Consensus        80 ~~v~~L~l~~l~~g~l~~~~g~l~~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L  159 (183)
                      ..++.|++.+..-..++    .  +..+++|++|++++|. +++ + +.+..+++|++|++++|++++ +|. +..+++|
T Consensus        63 ~~L~~L~L~~n~i~~~~----~--~~~l~~L~~L~L~~n~-l~~-~-~~~~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L  131 (308)
T 1h6u_A           63 NNLIGLELKDNQITDLA----P--LKNLTKITELELSGNP-LKN-V-SAIAGLQSIKTLDLTSTQITD-VTP-LAGLSNL  131 (308)
T ss_dssp             TTCCEEECCSSCCCCCG----G--GTTCCSCCEEECCSCC-CSC-C-GGGTTCTTCCEEECTTSCCCC-CGG-GTTCTTC
T ss_pred             CCCCEEEccCCcCCCCh----h--HccCCCCCEEEccCCc-CCC-c-hhhcCCCCCCEEECCCCCCCC-chh-hcCCCCC
Confidence            46778888744222222    1  6788999999999999 986 3 468899999999999999986 554 8999999


Q ss_pred             cEEEcccCCcccccCCcccccc
Q 046467          160 YKIVLMLSAGVCFYNAEEVCAV  181 (183)
Q Consensus       160 ~~L~L~~n~~~~~~~~e~~~~~  181 (183)
                      +.|++++|++.+..+...+..+
T Consensus       132 ~~L~l~~n~l~~~~~l~~l~~L  153 (308)
T 1h6u_A          132 QVLYLDLNQITNISPLAGLTNL  153 (308)
T ss_dssp             CEEECCSSCCCCCGGGGGCTTC
T ss_pred             CEEECCCCccCcCccccCCCCc
Confidence            9999999999876554444333

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=98.44  E-value=1.4e-07  Score=77.11  Aligned_cols=65  Identities=14%  Similarity=0.136  Sum_probs=37.9

Q ss_pred             CCCCCCCcEEeccCCCCccccCCccc-cCCCCCCEEEccCCccccCCCCCccccccccEEEcccCCccc
Q 046467          104 FSCFPNLRSFKIRSNYLLSGSIPSEI-TVLSTIRTLELTSNNLTGKLPNFTVTYYIFYKIVLMLSAGVC  171 (183)
Q Consensus       104 ~~~l~~L~~L~ls~N~~l~G~iP~~~-~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~~~~  171 (183)
                      +..+++|++|++++|. +++..|..+ ..+++|++|++++|.+++. |. ...+++|+.|+|++|++.+
T Consensus       140 ~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~  205 (317)
T 3o53_A          140 EGCRSRVQYLDLKLNE-IDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAF  205 (317)
T ss_dssp             TGGGSSEEEEECTTSC-CCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCE
T ss_pred             hhccCCCCEEECCCCC-CCcccHHHHhhccCcCCEEECCCCcCccc-cc-ccccccCCEEECCCCcCCc
Confidence            4455666666666666 665555544 2556666666666666543 32 2346666666666666654

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=98.42  E-value=3.7e-07  Score=78.30  Aligned_cols=67  Identities=13%  Similarity=0.077  Sum_probs=35.3

Q ss_pred             CCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCccccccccEEEcccCCcccccCC
Q 046467          104 FSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIFYKIVLMLSAGVCFYNA  175 (183)
Q Consensus       104 ~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~~~~~~~~  175 (183)
                      +..+++|+.|++++|+ +++..|  +..+++|++|++++|.+++.  +.+.++++|+.|++++|++.+..|.
T Consensus       305 ~~~l~~L~~L~L~~n~-l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~~  371 (466)
T 1o6v_A          305 ISNLKNLTYLTLYFNN-ISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTPL  371 (466)
T ss_dssp             GGGCTTCSEEECCSSC-CSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGGG
T ss_pred             hcCCCCCCEEECcCCc-CCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccchh
Confidence            3445555555555555 555433  44555555555555555543  2455555555555555555555443

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=98.41  E-value=2.1e-07  Score=76.31  Aligned_cols=64  Identities=19%  Similarity=0.141  Sum_probs=57.4

Q ss_pred             CCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCccccccccEEEcccCCcc
Q 046467          104 FSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIFYKIVLMLSAGV  170 (183)
Q Consensus       104 ~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~~~  170 (183)
                      +..+++|+.|++++|. +++..|..++.+++|++|++++|++++..|  +..+++|+.|++++|++.
T Consensus       283 ~~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          283 LNNLSQLNSLFLNNNQ-LGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK  346 (347)
T ss_dssp             GGGCTTCSEEECCSSC-CCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred             hcCCCCCCEEECcCCc-CCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence            6788999999999999 999999999999999999999999998666  899999999999999874

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=98.38  E-value=5.7e-07  Score=77.13  Aligned_cols=83  Identities=12%  Similarity=0.141  Sum_probs=59.9

Q ss_pred             CCEEEEEeCccCCCcccCCcCCccCCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCccccccc
Q 046467           80 GSVIGVSLLWYENDNIIGELGRFKFSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIF  159 (183)
Q Consensus        80 ~~v~~L~l~~l~~g~l~~~~g~l~~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L  159 (183)
                      ..++.|++.+.....++      ++.++++|++|++++|. +++..|  ++++++|++|++++|.+++. |+ +.++++|
T Consensus        68 ~~L~~L~Ls~n~l~~~~------~~~~l~~L~~L~l~~n~-l~~~~~--~~~l~~L~~L~L~~n~l~~~-~~-~~~l~~L  136 (466)
T 1o6v_A           68 NNLTQINFSNNQLTDIT------PLKNLTKLVDILMNNNQ-IADITP--LANLTNLTGLTLFNNQITDI-DP-LKNLTNL  136 (466)
T ss_dssp             TTCCEEECCSSCCCCCG------GGTTCTTCCEEECCSSC-CCCCGG--GTTCTTCCEEECCSSCCCCC-GG-GTTCTTC
T ss_pred             cCCCEEECCCCccCCch------hhhccccCCEEECCCCc-cccChh--hcCCCCCCEEECCCCCCCCC-hH-HcCCCCC
Confidence            45677777643211221      16778888888888888 886544  88888888888888888864 43 8888888


Q ss_pred             cEEEcccCCccccc
Q 046467          160 YKIVLMLSAGVCFY  173 (183)
Q Consensus       160 ~~L~L~~n~~~~~~  173 (183)
                      +.|++++|++....
T Consensus       137 ~~L~l~~n~l~~~~  150 (466)
T 1o6v_A          137 NRLELSSNTISDIS  150 (466)
T ss_dssp             SEEEEEEEEECCCG
T ss_pred             CEEECCCCccCCCh
Confidence            88888888877543

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=98.37  E-value=1.4e-06  Score=69.57  Aligned_cols=63  Identities=24%  Similarity=0.191  Sum_probs=32.6

Q ss_pred             CCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCccccccccEEEcccCCccc
Q 046467          104 FSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIFYKIVLMLSAGVC  171 (183)
Q Consensus       104 ~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~~~~  171 (183)
                      +..+++|+.|++++|+ +++. | .+..+++|++|++++|++++.  ..+..+++|+.|++++|++.+
T Consensus       124 l~~l~~L~~L~Ls~N~-i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~  186 (263)
T 1xeu_A          124 LIHLKNLEILSIRNNK-LKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVN  186 (263)
T ss_dssp             GTTCTTCCEEECTTSC-CCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEEC
T ss_pred             hcCcccccEEECCCCc-CCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccC
Confidence            4445555555555555 5542 2 345555555555555555543  345555555555555555543

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=98.33  E-value=8.3e-07  Score=79.69  Aligned_cols=64  Identities=20%  Similarity=0.157  Sum_probs=53.2

Q ss_pred             CCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCccccccccEEEcccCCcccccC
Q 046467          105 SCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIFYKIVLMLSAGVCFYN  174 (183)
Q Consensus       105 ~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~~~~~~~  174 (183)
                      ..+++|+.|++++|+ ++ .+|.   .+++|++|+|++|+++ .||..+.++++|+.|+|++|++++..|
T Consensus       238 ~~l~~L~~L~Ls~N~-L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~  301 (622)
T 3g06_A          238 VLPSELKELMVSGNR-LT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTL  301 (622)
T ss_dssp             CCCTTCCEEECCSSC-CS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHH
T ss_pred             CCCCcCcEEECCCCC-CC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCH
Confidence            345678888888888 87 4666   5788999999999999 889999999999999999999886543

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=98.32  E-value=8.4e-07  Score=76.44  Aligned_cols=64  Identities=14%  Similarity=0.143  Sum_probs=37.8

Q ss_pred             CCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCcccc--CCCCCcccc-------------ccccEEEcccCCccc
Q 046467          107 FPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTG--KLPNFTVTY-------------YIFYKIVLMLSAGVC  171 (183)
Q Consensus       107 l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G--~iP~~l~~l-------------~~L~~L~L~~n~~~~  171 (183)
                      +++|++|++++|. ++ .+|.   .+++|++|++++|+++|  .+|.+++++             ++|+.|++++|++.+
T Consensus       336 ~~~L~~L~L~~N~-l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~  410 (454)
T 1jl5_A          336 PPRLERLIASFNH-LA-EVPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLRE  410 (454)
T ss_dssp             CTTCCEEECCSSC-CS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC------------------------
T ss_pred             CCcCCEEECCCCc-cc-cccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCc
Confidence            4678888888888 88 4776   47889999999999999  899888888             889999999999987


Q ss_pred             --ccCC
Q 046467          172 --FYNA  175 (183)
Q Consensus       172 --~~~~  175 (183)
                        .+|.
T Consensus       411 ~~~iP~  416 (454)
T 1jl5_A          411 FPDIPE  416 (454)
T ss_dssp             ------
T ss_pred             cccchh
Confidence              6664

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=98.32  E-value=1.2e-07  Score=77.30  Aligned_cols=66  Identities=15%  Similarity=0.144  Sum_probs=35.7

Q ss_pred             CCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCC-ccccC-CCCCccccccccEEEcccC-Ccc
Q 046467          104 FSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSN-NLTGK-LPNFTVTYYIFYKIVLMLS-AGV  170 (183)
Q Consensus       104 ~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N-~l~G~-iP~~l~~l~~L~~L~L~~n-~~~  170 (183)
                      +..+++|++|++++|. +++.+|..++++++|++|++++| .+++. +|..+.++++|+.|+|++| ++.
T Consensus       114 ~~~~~~L~~L~L~~~~-l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~  182 (336)
T 2ast_B          114 LSQCSKLQNLSLEGLR-LSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFT  182 (336)
T ss_dssp             HTTBCCCSEEECTTCB-CCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCC
T ss_pred             HhhCCCCCEEeCcCcc-cCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcC
Confidence            3445555555555555 55555555555555555555555 45442 4444555555555555555 443

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=98.26  E-value=2.7e-06  Score=73.22  Aligned_cols=61  Identities=15%  Similarity=0.106  Sum_probs=39.4

Q ss_pred             CCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCccccccccEEEcccCCccc
Q 046467          104 FSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIFYKIVLMLSAGVC  171 (183)
Q Consensus       104 ~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~~~~  171 (183)
                      ++++++|++|++++|+ +++ +|..+   .+|++|++++|++++ +| +++++++|+.|++++|++.+
T Consensus       149 ~~~l~~L~~L~l~~N~-l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~  209 (454)
T 1jl5_A          149 LQNSSFLKIIDVDNNS-LKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK  209 (454)
T ss_dssp             CTTCTTCCEEECCSSC-CSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS
T ss_pred             cCCCCCCCEEECCCCc-Ccc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc
Confidence            5566666666666666 664 55432   366666666666665 55 46777777777777777665

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=98.21  E-value=7.8e-07  Score=79.89  Aligned_cols=93  Identities=17%  Similarity=0.175  Sum_probs=43.1

Q ss_pred             CCC-CCCCCCcccccee------CC-CCCEEEEEeCccCCCcccCCcCCccCCCCCCCcEEeccCCCCccccCCccccCC
Q 046467           61 TGN-YTSDHCKWTGISC------NS-AGSVIGVSLLWYENDNIIGELGRFKFSCFPNLRSFKIRSNYLLSGSIPSEITVL  132 (183)
Q Consensus        61 ~~W-~~~~~C~w~gv~C------~~-~~~v~~L~l~~l~~g~l~~~~g~l~~~~l~~L~~L~ls~N~~l~G~iP~~~~~l  132 (183)
                      ..| ...++|.|.|..|      .. ...++.|++.+.+-..+|..+     .  ++|++|++++|+ ++ .+|.   .+
T Consensus        13 ~~W~~~~~~~~~~~r~~~~~~~~~c~~~~l~~L~ls~n~L~~lp~~l-----~--~~L~~L~L~~N~-l~-~lp~---~l   80 (622)
T 3g06_A           13 SAWRRAAPAEESRGRAAVVQKMRACLNNGNAVLNVGESGLTTLPDCL-----P--AHITTLVIPDNN-LT-SLPA---LP   80 (622)
T ss_dssp             HHHHHTCCGGGHHHHHHHHHHHHHHHHHCCCEEECCSSCCSCCCSCC-----C--TTCSEEEECSCC-CS-CCCC---CC
T ss_pred             HHHHhcCCcchhccccccCcccccccCCCCcEEEecCCCcCccChhh-----C--CCCcEEEecCCC-CC-CCCC---cC
Confidence            456 3567788866421      11 124667777644333444331     1  345555555554 44 2443   23


Q ss_pred             CCCCEEEccCCccccCCCCCccccccccEEEcccCCc
Q 046467          133 STIRTLELTSNNLTGKLPNFTVTYYIFYKIVLMLSAG  169 (183)
Q Consensus       133 ~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~~  169 (183)
                      ++|++|+|++|+++ .+|.   .+++|++|+|++|++
T Consensus        81 ~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N~l  113 (622)
T 3g06_A           81 PELRTLEVSGNQLT-SLPV---LPPGLLELSIFSNPL  113 (622)
T ss_dssp             TTCCEEEECSCCCS-CCCC---CCTTCCEEEECSCCC
T ss_pred             CCCCEEEcCCCcCC-cCCC---CCCCCCEEECcCCcC
Confidence            44444444444444 2443   333444444444433

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=98.17  E-value=2.2e-07  Score=77.66  Aligned_cols=69  Identities=17%  Similarity=0.105  Sum_probs=47.7

Q ss_pred             CCCCCCCcEEeccCCCCcccc----CCccc--cCCCCCCEEEccCCcccc----CCCCCc-cccccccEEEcccCCcccc
Q 046467          104 FSCFPNLRSFKIRSNYLLSGS----IPSEI--TVLSTIRTLELTSNNLTG----KLPNFT-VTYYIFYKIVLMLSAGVCF  172 (183)
Q Consensus       104 ~~~l~~L~~L~ls~N~~l~G~----iP~~~--~~l~~L~~L~Ls~N~l~G----~iP~~l-~~l~~L~~L~L~~n~~~~~  172 (183)
                      +..+++|++|++++|. +++.    +|..+  +.+++|++|+|++|.+++    .+|..+ .++++|+.|+|++|++.+.
T Consensus       240 l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~  318 (386)
T 2ca6_A          240 LKSWPNLRELGLNDCL-LSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEE  318 (386)
T ss_dssp             GGGCTTCCEEECTTCC-CCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTT
T ss_pred             HccCCCcCEEECCCCC-CchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcc
Confidence            5566677777777777 7665    55555  337777777777777776    477666 5577777777777777654


Q ss_pred             c
Q 046467          173 Y  173 (183)
Q Consensus       173 ~  173 (183)
                      .
T Consensus       319 ~  319 (386)
T 2ca6_A          319 D  319 (386)
T ss_dssp             S
T ss_pred             h
Confidence            4

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=98.15  E-value=2e-07  Score=76.07  Aligned_cols=62  Identities=11%  Similarity=0.093  Sum_probs=34.5

Q ss_pred             CCCCCCcEEeccCCCCcccc-CCccccCCCCCCEEEccCCccccCCCCCccccccccEEEcccC
Q 046467          105 SCFPNLRSFKIRSNYLLSGS-IPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIFYKIVLMLS  167 (183)
Q Consensus       105 ~~l~~L~~L~ls~N~~l~G~-iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n  167 (183)
                      ..+++|++|++++|. +++. +|..+..+++|++|++++|.+++.+|..++++++|+.|+|++|
T Consensus        90 ~~~~~L~~L~L~~~~-l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~  152 (336)
T 2ast_B           90 FSPFRVQHMDLSNSV-IEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGC  152 (336)
T ss_dssp             CCCBCCCEEECTTCE-ECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTC
T ss_pred             ccCCCCCEEEccCCC-cCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCC
Confidence            344555555555555 5544 5555555555555555555555555555555555555555555

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=98.08  E-value=1.2e-06  Score=73.20  Aligned_cols=66  Identities=12%  Similarity=0.082  Sum_probs=43.4

Q ss_pred             CCCCCCCcEEeccCCCCccc----cCCccccCCCCCCEEEccCCccccCCCCCccc----c---------ccccEEEccc
Q 046467          104 FSCFPNLRSFKIRSNYLLSG----SIPSEITVLSTIRTLELTSNNLTGKLPNFTVT----Y---------YIFYKIVLML  166 (183)
Q Consensus       104 ~~~l~~L~~L~ls~N~~l~G----~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~----l---------~~L~~L~L~~  166 (183)
                      +..+++|++|++++|. +++    .+|..+..+++|++|+|++|.+++..+..+..    +         ++|+.|+|++
T Consensus        90 l~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~  168 (386)
T 2ca6_A           90 LLKCPKLHTVRLSDNA-FGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGR  168 (386)
T ss_dssp             HTTCTTCCEEECCSCC-CCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCS
T ss_pred             HhhCCcccEEECCCCc-CCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCC
Confidence            3566777777777777 766    46666677777777777777776444433333    2         6777777777


Q ss_pred             CCcc
Q 046467          167 SAGV  170 (183)
Q Consensus       167 n~~~  170 (183)
                      |++.
T Consensus       169 n~l~  172 (386)
T 2ca6_A          169 NRLE  172 (386)
T ss_dssp             SCCT
T ss_pred             CCCC
Confidence            7765

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.07  E-value=3.6e-07  Score=69.66  Aligned_cols=64  Identities=14%  Similarity=0.245  Sum_probs=59.5

Q ss_pred             CCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCccccccccEEEcccCCccc
Q 046467          104 FSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIFYKIVLMLSAGVC  171 (183)
Q Consensus       104 ~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~~~~  171 (183)
                      +..+++|++|++++|. +++ +| .+..+++|++|++++|.++ .+|..+..+++|+.|+|++|++.+
T Consensus        44 ~~~l~~L~~L~ls~n~-l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~  107 (198)
T 1ds9_A           44 LSTLKACKHLALSTNN-IEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS  107 (198)
T ss_dssp             HHHTTTCSEEECSEEE-ESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC
T ss_pred             HhcCCCCCEEECCCCC-Ccc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc
Confidence            7788999999999999 997 78 8999999999999999999 799988889999999999999876

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=98.00  E-value=1.2e-06  Score=72.81  Aligned_cols=63  Identities=21%  Similarity=0.151  Sum_probs=43.6

Q ss_pred             CCCcEEeccCCCCccccCCccccC----C-CCCCEEEccCCccccCCCCCccc-----cccccEEEcccCCccc
Q 046467          108 PNLRSFKIRSNYLLSGSIPSEITV----L-STIRTLELTSNNLTGKLPNFTVT-----YYIFYKIVLMLSAGVC  171 (183)
Q Consensus       108 ~~L~~L~ls~N~~l~G~iP~~~~~----l-~~L~~L~Ls~N~l~G~iP~~l~~-----l~~L~~L~L~~n~~~~  171 (183)
                      ++|++|++++|. +++..+..++.    + ++|++|++++|.+++..+..+..     .++|+.|+|++|++..
T Consensus        80 ~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~  152 (362)
T 3goz_A           80 ANVTSLNLSGNF-LSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGI  152 (362)
T ss_dssp             TTCCEEECCSSC-GGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGG
T ss_pred             CCccEEECcCCc-CChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCH
Confidence            678888888888 77666654433    3 77888888888887665554443     2578888888877763

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=97.95  E-value=1.8e-06  Score=71.72  Aligned_cols=92  Identities=20%  Similarity=0.164  Sum_probs=67.9

Q ss_pred             CCEEEEEeCccCCCcccC-CcCCccCCCCC-CCcEEeccCCCCccccCCccccCC-----CCCCEEEccCCccccCCCCC
Q 046467           80 GSVIGVSLLWYENDNIIG-ELGRFKFSCFP-NLRSFKIRSNYLLSGSIPSEITVL-----STIRTLELTSNNLTGKLPNF  152 (183)
Q Consensus        80 ~~v~~L~l~~l~~g~l~~-~~g~l~~~~l~-~L~~L~ls~N~~l~G~iP~~~~~l-----~~L~~L~Ls~N~l~G~iP~~  152 (183)
                      ..++.|++.+..-+..+. .+.. .+..++ +|++|++++|. +++..+..+..+     ++|++|++++|.+++..+..
T Consensus        22 ~~L~~L~Ls~n~l~~~~~~~l~~-~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~   99 (362)
T 3goz_A           22 HGVTSLDLSLNNLYSISTVELIQ-AFANTPASVTSLNLSGNS-LGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDE   99 (362)
T ss_dssp             TTCCEEECTTSCGGGSCHHHHHH-HHHTCCTTCCEEECCSSC-GGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHH
T ss_pred             CCceEEEccCCCCChHHHHHHHH-HHHhCCCceeEEECcCCC-CCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHH
Confidence            358888887542122111 0000 055677 89999999999 998878777775     99999999999999888876


Q ss_pred             cccc-----ccccEEEcccCCccccc
Q 046467          153 TVTY-----YIFYKIVLMLSAGVCFY  173 (183)
Q Consensus       153 l~~l-----~~L~~L~L~~n~~~~~~  173 (183)
                      ++..     ++|+.|+|++|++....
T Consensus       100 l~~~l~~~~~~L~~L~Ls~N~l~~~~  125 (362)
T 3goz_A          100 LVKTLAAIPFTITVLDLGWNDFSSKS  125 (362)
T ss_dssp             HHHHHHTSCTTCCEEECCSSCGGGSC
T ss_pred             HHHHHHhCCCCccEEECcCCcCCcHH
Confidence            6654     89999999999987543

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.87  E-value=6.9e-06  Score=66.46  Aligned_cols=77  Identities=14%  Similarity=0.223  Sum_probs=57.8

Q ss_pred             CCEEEEEeCccCCCcccCCcCCcc--CCCCCCCcEEeccCCCCccccCCccccCCC--CCCEEEccCCccccCCCC----
Q 046467           80 GSVIGVSLLWYENDNIIGELGRFK--FSCFPNLRSFKIRSNYLLSGSIPSEITVLS--TIRTLELTSNNLTGKLPN----  151 (183)
Q Consensus        80 ~~v~~L~l~~l~~g~l~~~~g~l~--~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~--~L~~L~Ls~N~l~G~iP~----  151 (183)
                      ..+..|++++..-..++    .++  +..+++|+.|+|++|+ +++.  .++..++  +|++|+|++|.+++.+|.    
T Consensus       170 ~~L~~L~Ls~N~l~~l~----~l~~~~~~l~~L~~L~Ls~N~-i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y  242 (267)
T 3rw6_A          170 PELLSLNLSNNRLYRLD----DMSSIVQKAPNLKILNLSGNE-LKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTY  242 (267)
T ss_dssp             TTCCEEECTTSCCCCCG----GGTTHHHHSTTCCEEECTTSC-CCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHH
T ss_pred             CCCCEEECCCCCCCCCc----cchhHHhhCCCCCEEECCCCc-cCCc--hhhhhcccCCcceEEccCCcCccccCcchhH
Confidence            47888998854211111    111  4578999999999999 9975  4455555  999999999999999984    


Q ss_pred             ---CccccccccEEE
Q 046467          152 ---FTVTYYIFYKIV  163 (183)
Q Consensus       152 ---~l~~l~~L~~L~  163 (183)
                         -+..+|+|+.||
T Consensus       243 ~~~il~~~P~L~~LD  257 (267)
T 3rw6_A          243 ISAIRERFPKLLRLD  257 (267)
T ss_dssp             HHHHHHHCTTCCEES
T ss_pred             HHHHHHHCcccCeEC
Confidence               267899999987

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.71  E-value=9.6e-05  Score=53.15  Aligned_cols=59  Identities=22%  Similarity=0.169  Sum_probs=35.5

Q ss_pred             EEeccCCCCcc-ccCCccccCCCCCCEEEccCCccccCCCCCccccccccEEEcccCCccccc
Q 046467          112 SFKIRSNYLLS-GSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIFYKIVLMLSAGVCFY  173 (183)
Q Consensus       112 ~L~ls~N~~l~-G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~~~~~~  173 (183)
                      .++.+++. ++ ..+|..+  ..+|++|+|++|+|+.--+..+..+++|+.|+|.+|++.|-+
T Consensus        12 ~v~Cs~~~-L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~CdC   71 (130)
T 3rfe_A           12 LVDCGRRG-LTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDC   71 (130)
T ss_dssp             EEECCSSC-CCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCSG
T ss_pred             EEEeCCCC-CccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeeccC
Confidence            45555555 54 3455443  235677777777777422334566777777777777777643

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=97.67  E-value=7.8e-05  Score=61.49  Aligned_cols=64  Identities=8%  Similarity=0.063  Sum_probs=52.6

Q ss_pred             CCCcEEeccCCCCccccCC-ccccCCCCCCEEEccCCccccCCCC-CccccccccE-EEcccCCccccc
Q 046467          108 PNLRSFKIRSNYLLSGSIP-SEITVLSTIRTLELTSNNLTGKLPN-FTVTYYIFYK-IVLMLSAGVCFY  173 (183)
Q Consensus       108 ~~L~~L~ls~N~~l~G~iP-~~~~~l~~L~~L~Ls~N~l~G~iP~-~l~~l~~L~~-L~L~~n~~~~~~  173 (183)
                      +++++|++++|+ ++. || ..|.++++|++|+|++|++.+.+|. .+.++++++. +.+..|++....
T Consensus        30 ~~l~~L~Ls~N~-i~~-i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~   96 (350)
T 4ay9_X           30 RNAIELRFVLTK-LRV-IQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYIN   96 (350)
T ss_dssp             TTCSEEEEESCC-CSE-ECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEEC
T ss_pred             CCCCEEEccCCc-CCC-cCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccC
Confidence            689999999999 995 65 4689999999999999999988886 4678988876 555667776543

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=97.64  E-value=3.2e-06  Score=71.62  Aligned_cols=68  Identities=16%  Similarity=0.050  Sum_probs=49.9

Q ss_pred             CCCCCCCcEEeccCCCCccccCCccccC-----CCCCCEEEccCCcccc----CCCCCccccccccEEEcccCCcccc
Q 046467          104 FSCFPNLRSFKIRSNYLLSGSIPSEITV-----LSTIRTLELTSNNLTG----KLPNFTVTYYIFYKIVLMLSAGVCF  172 (183)
Q Consensus       104 ~~~l~~L~~L~ls~N~~l~G~iP~~~~~-----l~~L~~L~Ls~N~l~G----~iP~~l~~l~~L~~L~L~~n~~~~~  172 (183)
                      +..+++|++|++++|. +++..+..+..     .++|++|++++|.+++    .+|..+.++++|+.|+|++|++...
T Consensus       337 l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~  413 (461)
T 1z7x_W          337 LAQNRFLLELQISNNR-LEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDA  413 (461)
T ss_dssp             HHHCSSCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHH
T ss_pred             HhhCCCccEEEccCCc-cccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHH
Confidence            3345777888888887 77655544432     5678888888888876    7787788888888888888887643

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=97.42  E-value=2e-05  Score=66.62  Aligned_cols=62  Identities=18%  Similarity=0.250  Sum_probs=45.5

Q ss_pred             CCcEEeccCCCCccc----cCCccccCCCCCCEEEccCCccccCCCCCccc-----cccccEEEcccCCccc
Q 046467          109 NLRSFKIRSNYLLSG----SIPSEITVLSTIRTLELTSNNLTGKLPNFTVT-----YYIFYKIVLMLSAGVC  171 (183)
Q Consensus       109 ~L~~L~ls~N~~l~G----~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~-----l~~L~~L~L~~n~~~~  171 (183)
                      +|++|++++|. ++.    .+|..+..+++|++|++++|.+++..+..+..     .++|+.|+|++|++..
T Consensus        86 ~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~  156 (461)
T 1z7x_W           86 KIQKLSLQNCC-LTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSA  156 (461)
T ss_dssp             CCCEEECTTSC-CBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBG
T ss_pred             ceeEEEccCCC-CCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCH
Confidence            68888888888 773    56777888888888888888877655544332     4568888888887664

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=97.41  E-value=2.7e-05  Score=68.00  Aligned_cols=65  Identities=9%  Similarity=-0.005  Sum_probs=52.5

Q ss_pred             CCCCCcEEeccCCCCccc-cCCccccCCCCCCEEEccCCccccC-CCCCccccccccEEEcccCCccc
Q 046467          106 CFPNLRSFKIRSNYLLSG-SIPSEITVLSTIRTLELTSNNLTGK-LPNFTVTYYIFYKIVLMLSAGVC  171 (183)
Q Consensus       106 ~l~~L~~L~ls~N~~l~G-~iP~~~~~l~~L~~L~Ls~N~l~G~-iP~~l~~l~~L~~L~L~~n~~~~  171 (183)
                      .+++|++|++++|. +++ .++..+..+++|++|++++|.+++. ++..+..+++|+.|+|++|++..
T Consensus       461 ~~~~L~~L~L~~n~-l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~  527 (592)
T 3ogk_B          461 YSPNVRWMLLGYVG-ESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASM  527 (592)
T ss_dssp             SCTTCCEEEECSCC-SSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCT
T ss_pred             hCccceEeeccCCC-CCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCH
Confidence            37789999999999 887 4556667889999999999998766 34445678999999999999763

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=97.24  E-value=4.5e-05  Score=64.08  Aligned_cols=65  Identities=8%  Similarity=0.055  Sum_probs=34.9

Q ss_pred             CCCCCCcEEeccCCCCcccc----CCccccCCCCCCEEEccCCccccC----CCCCccccccccEEEcccCCcc
Q 046467          105 SCFPNLRSFKIRSNYLLSGS----IPSEITVLSTIRTLELTSNNLTGK----LPNFTVTYYIFYKIVLMLSAGV  170 (183)
Q Consensus       105 ~~l~~L~~L~ls~N~~l~G~----iP~~~~~l~~L~~L~Ls~N~l~G~----iP~~l~~l~~L~~L~L~~n~~~  170 (183)
                      ...++|++|+|++|. ++..    ++..+...+.|++|+|++|.++..    ++..+...++|++|+|+.|++.
T Consensus       180 ~~~~~L~~L~Ls~N~-l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~  252 (372)
T 3un9_A          180 AGNTSVTHLSLLHTG-LGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELS  252 (372)
T ss_dssp             HTCSSCCEEECTTSS-CHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred             hcCCCcCEEeCCCCC-CCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCC
Confidence            344556666666666 5431    233444555666666666666532    2233334566666666666654

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=97.06  E-value=0.00013  Score=61.17  Aligned_cols=64  Identities=9%  Similarity=0.095  Sum_probs=46.7

Q ss_pred             CCCCCcEEeccCCCCccc----cCCccccCCCCCCEEEccCCccccC----CCCCccccccccEEEcccCCcc
Q 046467          106 CFPNLRSFKIRSNYLLSG----SIPSEITVLSTIRTLELTSNNLTGK----LPNFTVTYYIFYKIVLMLSAGV  170 (183)
Q Consensus       106 ~l~~L~~L~ls~N~~l~G----~iP~~~~~l~~L~~L~Ls~N~l~G~----iP~~l~~l~~L~~L~L~~n~~~  170 (183)
                      ..++|+.|++++|. ++.    .++..+..+++|++|+|++|.++..    ++..+...++|+.|+|++|++.
T Consensus       153 ~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~  224 (372)
T 3un9_A          153 DQCQITTLRLSNNP-LTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAG  224 (372)
T ss_dssp             TTCCCCEEECCSSC-CHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCC
T ss_pred             cCCccceeeCCCCC-CChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCC
Confidence            45678888888888 764    2445556778888888888888652    2445666778888888888775

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=96.94  E-value=0.00014  Score=61.07  Aligned_cols=64  Identities=17%  Similarity=0.185  Sum_probs=43.5

Q ss_pred             CCCCCcEEeccCCCCccccCCcccc---CCCCCCEEEccCCccccC----CCCCccccccccEEEcccCCcc
Q 046467          106 CFPNLRSFKIRSNYLLSGSIPSEIT---VLSTIRTLELTSNNLTGK----LPNFTVTYYIFYKIVLMLSAGV  170 (183)
Q Consensus       106 ~l~~L~~L~ls~N~~l~G~iP~~~~---~l~~L~~L~Ls~N~l~G~----iP~~l~~l~~L~~L~L~~n~~~  170 (183)
                      .+++|++|++.+|. +.+..+..+.   .+++|++|+|+.|.+++.    ++..+.++++|+.|+|++|.+.
T Consensus       250 ~~p~Lr~L~L~~~~-i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~  320 (362)
T 2ra8_A          250 RFPNLKWLGIVDAE-EQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS  320 (362)
T ss_dssp             TCTTCCEEEEESCT-THHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred             CCCCcCEEeCCCCC-CchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence            46778888887777 6654433332   466788888888887763    4555567788888888777544

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=96.93  E-value=0.00012  Score=63.79  Aligned_cols=64  Identities=5%  Similarity=0.044  Sum_probs=36.7

Q ss_pred             CCCCCcEEeccCCCCcccc----CCccccCCCCCCEEEccCCccc----cCCCCCccccccccEEEcccCCcc
Q 046467          106 CFPNLRSFKIRSNYLLSGS----IPSEITVLSTIRTLELTSNNLT----GKLPNFTVTYYIFYKIVLMLSAGV  170 (183)
Q Consensus       106 ~l~~L~~L~ls~N~~l~G~----iP~~~~~l~~L~~L~Ls~N~l~----G~iP~~l~~l~~L~~L~L~~n~~~  170 (183)
                      .+++|++|++++|. +++.    ++.....+++|++|++++|.++    +.++..+.++++|+.|+|++|.+.
T Consensus       162 ~~~~L~~L~L~~~~-~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~  233 (592)
T 3ogk_B          162 HCRKIKTLLMEESS-FSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEIL  233 (592)
T ss_dssp             HCTTCSEEECTTCE-EECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGG
T ss_pred             hCCCCCEEECcccc-ccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHH
Confidence            45667777777766 6554    3334445666666666666665    233333445666666666665543

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=96.79  E-value=0.00032  Score=52.95  Aligned_cols=65  Identities=18%  Similarity=0.281  Sum_probs=43.4

Q ss_pred             CCCCCCcEEeccCCCCcccc----CCccccCCCCCCEEEc--cCCccccCC----CCCccccccccEEEcccCCcc
Q 046467          105 SCFPNLRSFKIRSNYLLSGS----IPSEITVLSTIRTLEL--TSNNLTGKL----PNFTVTYYIFYKIVLMLSAGV  170 (183)
Q Consensus       105 ~~l~~L~~L~ls~N~~l~G~----iP~~~~~l~~L~~L~L--s~N~l~G~i----P~~l~~l~~L~~L~L~~n~~~  170 (183)
                      ...+.|++|+|++|. ++..    +...+...+.|++|+|  ++|.++..-    -..+...++|+.|+|+.|.+.
T Consensus        90 ~~n~~L~~L~L~~N~-i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A           90 KVNNTLKSLNVESNF-ISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHCSSCCEEECCSSC-CCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HhCCCcCEEECcCCc-CCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence            344678888888888 7653    4455666777888888  777776542    223444577888888777654

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=96.77  E-value=0.00021  Score=62.27  Aligned_cols=62  Identities=8%  Similarity=-0.038  Sum_probs=40.5

Q ss_pred             CCCCcEEeccCCCCccccCCccc-cCCCCCCEEEccCCccccCCCC-CccccccccEEEcccCCc
Q 046467          107 FPNLRSFKIRSNYLLSGSIPSEI-TVLSTIRTLELTSNNLTGKLPN-FTVTYYIFYKIVLMLSAG  169 (183)
Q Consensus       107 l~~L~~L~ls~N~~l~G~iP~~~-~~l~~L~~L~Ls~N~l~G~iP~-~l~~l~~L~~L~L~~n~~  169 (183)
                      +++|+.|++++|. +++..+..+ ..+++|++|+|++|.+++..+. .+..+++|+.|++++|+.
T Consensus       455 ~~~L~~L~L~~~~-i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~  518 (594)
T 2p1m_B          455 AKKMEMLSVAFAG-DSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV  518 (594)
T ss_dssp             CTTCCEEEEESCC-SSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred             chhccEeeccCCC-CcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence            5667777777777 665544444 5577777777777777554443 234577777777777766

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=96.41  E-value=0.00068  Score=51.10  Aligned_cols=88  Identities=16%  Similarity=0.126  Sum_probs=61.1

Q ss_pred             CCEEEEEeCccCCCcccCC-cCCcc--CCCCCCCcEEeccCCCCcccc----CCccccCCCCCCEEEccCCccccC----
Q 046467           80 GSVIGVSLLWYENDNIIGE-LGRFK--FSCFPNLRSFKIRSNYLLSGS----IPSEITVLSTIRTLELTSNNLTGK----  148 (183)
Q Consensus        80 ~~v~~L~l~~l~~g~l~~~-~g~l~--~~~l~~L~~L~ls~N~~l~G~----iP~~~~~l~~L~~L~Ls~N~l~G~----  148 (183)
                      ..++.|++.+.  ..+... +..+.  +...++|++|+|++|. +...    +...+...+.|++|+|++|.++..    
T Consensus        36 ~~L~~L~L~~n--~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~-i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~  112 (185)
T 1io0_A           36 PDLEEVNLNNI--MNIPVPTLKACAEALKTNTYVKKFSIVGTR-SNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA  112 (185)
T ss_dssp             TTCCEEECTTC--TTCCHHHHHHHHHHHTTCCSCCEEECTTSC-CCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred             CCCCEEEecCC--CCCCHHHHHHHHHHHHhCCCcCEEECcCCC-CChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHH
Confidence            46778888643  022111 00010  5567899999999999 8642    344566678899999999999864    


Q ss_pred             CCCCccccccccEEEc--ccCCcc
Q 046467          149 LPNFTVTYYIFYKIVL--MLSAGV  170 (183)
Q Consensus       149 iP~~l~~l~~L~~L~L--~~n~~~  170 (183)
                      +...+...+.|+.|+|  +.|.+.
T Consensus       113 l~~~L~~n~~L~~L~L~~~~N~i~  136 (185)
T 1io0_A          113 LVEALQSNTSLIELRIDNQSQPLG  136 (185)
T ss_dssp             HHHGGGGCSSCCEEECCCCSSCCC
T ss_pred             HHHHHHhCCCceEEEecCCCCCCC
Confidence            4556777889999999  778765

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=96.38  E-value=0.00042  Score=60.29  Aligned_cols=63  Identities=10%  Similarity=0.000  Sum_probs=45.0

Q ss_pred             CCCCCcEEeccCCCCccccCCccccC-CCCCCEEEccCCccccCCCCCc-cccccccEEEcccCCcc
Q 046467          106 CFPNLRSFKIRSNYLLSGSIPSEITV-LSTIRTLELTSNNLTGKLPNFT-VTYYIFYKIVLMLSAGV  170 (183)
Q Consensus       106 ~l~~L~~L~ls~N~~l~G~iP~~~~~-l~~L~~L~Ls~N~l~G~iP~~l-~~l~~L~~L~L~~n~~~  170 (183)
                      .+++|+.|++++ + +++..+..++. +++|++|++++|.+++..+..+ ..+++|+.|+|++|++.
T Consensus       430 ~~~~L~~L~L~~-~-l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~  494 (594)
T 2p1m_B          430 HCKDLRRLSLSG-L-LTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFG  494 (594)
T ss_dssp             HCTTCCEEECCS-S-CCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCC
T ss_pred             hCCCccEEeecC-c-ccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCc
Confidence            455677777755 5 56555555555 7888888888888876655555 56888999999888874

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=96.26  E-value=0.012  Score=47.75  Aligned_cols=84  Identities=14%  Similarity=0.060  Sum_probs=54.6

Q ss_pred             CCEEEEEeCccCCCcccCCcCCccCCCCCCCcEEeccCCCCccccCCccccCCCCCC-EEEccCCccccCCCCCcccccc
Q 046467           80 GSVIGVSLLWYENDNIIGELGRFKFSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIR-TLELTSNNLTGKLPNFTVTYYI  158 (183)
Q Consensus        80 ~~v~~L~l~~l~~g~l~~~~g~l~~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~-~L~Ls~N~l~G~iP~~l~~l~~  158 (183)
                      ..++.+++.+.+-..++.    -.|..+++|+.+++++|  ++..-+..|.++++|+ .+++.+ +++---+..+.++++
T Consensus       226 ~~L~~l~L~~n~i~~I~~----~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~  298 (329)
T 3sb4_A          226 PNLVSLDISKTNATTIPD----FTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDN  298 (329)
T ss_dssp             TTCCEEECTTBCCCEECT----TTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTT
T ss_pred             CCCeEEECCCCCcceecH----hhhhCCCCCCEEECCcc--cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCcc
Confidence            356666665321122221    12777888888888776  4533334578888888 888887 565333466778888


Q ss_pred             ccEEEcccCCcc
Q 046467          159 FYKIVLMLSAGV  170 (183)
Q Consensus       159 L~~L~L~~n~~~  170 (183)
                      |+.+++..|++.
T Consensus       299 L~~l~l~~n~i~  310 (329)
T 3sb4_A          299 LRYVLATGDKIT  310 (329)
T ss_dssp             EEEEEECSSCCC
T ss_pred             CCEEEeCCCccC
Confidence            888888777765

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=95.92  E-value=0.013  Score=47.55  Aligned_cols=56  Identities=20%  Similarity=0.235  Sum_probs=47.7

Q ss_pred             CCCCcEEeccCCCCccccCC-ccccCCCCCCEEEccCCccccCCC-CCcccccccc-EEEccc
Q 046467          107 FPNLRSFKIRSNYLLSGSIP-SEITVLSTIRTLELTSNNLTGKLP-NFTVTYYIFY-KIVLML  166 (183)
Q Consensus       107 l~~L~~L~ls~N~~l~G~iP-~~~~~l~~L~~L~Ls~N~l~G~iP-~~l~~l~~L~-~L~L~~  166 (183)
                      +++|+.+++++|+ ++ .|| ..|.++++|+++++.+| ++ .|+ ..+.++++|+ .+++..
T Consensus       225 ~~~L~~l~L~~n~-i~-~I~~~aF~~~~~L~~l~l~~n-i~-~I~~~aF~~~~~L~~~l~l~~  283 (329)
T 3sb4_A          225 MPNLVSLDISKTN-AT-TIPDFTFAQKKYLLKIKLPHN-LK-TIGQRVFSNCGRLAGTLELPA  283 (329)
T ss_dssp             CTTCCEEECTTBC-CC-EECTTTTTTCTTCCEEECCTT-CC-EECTTTTTTCTTCCEEEEECT
T ss_pred             cCCCeEEECCCCC-cc-eecHhhhhCCCCCCEEECCcc-cc-eehHHHhhCChhccEEEEEcc
Confidence            7899999999999 88 455 46899999999999998 66 455 4688999999 999876

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=95.46  E-value=0.024  Score=40.35  Aligned_cols=38  Identities=21%  Similarity=0.303  Sum_probs=31.8

Q ss_pred             CCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccc
Q 046467          108 PNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLT  146 (183)
Q Consensus       108 ~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~  146 (183)
                      ++|+.|+|++|+ |+..-+..|..+++|++|+|++|.+.
T Consensus        31 ~~l~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           31 VDTTELVLTGNN-LTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             TTCSEEECTTSC-CSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             cCCCEEECCCCc-CCccChhhhhhccccCEEEecCCCee
Confidence            479999999999 99543455788999999999999764

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=94.85  E-value=0.0071  Score=45.75  Aligned_cols=85  Identities=9%  Similarity=0.018  Sum_probs=57.8

Q ss_pred             CCEEEEEeCccCCCcccCCcCCccCCCCCCCcEEeccCCCCccccCCccccCC----CCCCEEEccCCc-cccCCCCCcc
Q 046467           80 GSVIGVSLLWYENDNIIGELGRFKFSCFPNLRSFKIRSNYLLSGSIPSEITVL----STIRTLELTSNN-LTGKLPNFTV  154 (183)
Q Consensus        80 ~~v~~L~l~~l~~g~l~~~~g~l~~~~l~~L~~L~ls~N~~l~G~iP~~~~~l----~~L~~L~Ls~N~-l~G~iP~~l~  154 (183)
                      ..++.|++++..   +... |--.+..+++|+.|+|+++..++..-=..++.+    ++|++|+|+++. +|..==..+.
T Consensus        61 ~~L~~LDLs~~~---Itd~-GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~  136 (176)
T 3e4g_A           61 YKIQAIDATDSC---IMSI-GFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALH  136 (176)
T ss_dssp             CCEEEEEEESCC---CCGG-GGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGG
T ss_pred             ceEeEEeCcCCC---ccHH-HHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHh
Confidence            478999998541   2211 111167899999999999853554333345554    379999999974 6543334577


Q ss_pred             ccccccEEEcccCC
Q 046467          155 TYYIFYKIVLMLSA  168 (183)
Q Consensus       155 ~l~~L~~L~L~~n~  168 (183)
                      ++++|+.|+|+.-.
T Consensus       137 ~~~~L~~L~L~~c~  150 (176)
T 3e4g_A          137 HFRNLKYLFLSDLP  150 (176)
T ss_dssp             GCTTCCEEEEESCT
T ss_pred             cCCCCCEEECCCCC
Confidence            89999999998654

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=93.59  E-value=0.14  Score=43.07  Aligned_cols=60  Identities=15%  Similarity=0.189  Sum_probs=38.7

Q ss_pred             CCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCC-CCccccccccEEEcccC
Q 046467          104 FSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLP-NFTVTYYIFYKIVLMLS  167 (183)
Q Consensus       104 ~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP-~~l~~l~~L~~L~L~~n  167 (183)
                      |..+++|+.++++.|+ ++ .||.....+++|+.+.+.+| ++ .|+ ..+.++++|+.++|..|
T Consensus       176 F~~c~~L~~l~l~~n~-l~-~I~~~aF~~~~L~~l~lp~~-l~-~I~~~aF~~~~~L~~l~l~~~  236 (401)
T 4fdw_A          176 FYYCYNLKKADLSKTK-IT-KLPASTFVYAGIEEVLLPVT-LK-EIGSQAFLKTSQLKTIEIPEN  236 (401)
T ss_dssp             TTTCTTCCEEECTTSC-CS-EECTTTTTTCCCSEEECCTT-CC-EECTTTTTTCTTCCCEECCTT
T ss_pred             hhCcccCCeeecCCCc-ce-EechhhEeecccCEEEeCCc-hh-eehhhHhhCCCCCCEEecCCC
Confidence            6677778888887777 76 45554444677777777644 44 333 34666777777777543

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=92.56  E-value=0.21  Score=41.91  Aligned_cols=16  Identities=19%  Similarity=0.274  Sum_probs=8.9

Q ss_pred             CCCCCCCcEEeccCCC
Q 046467          104 FSCFPNLRSFKIRSNY  119 (183)
Q Consensus       104 ~~~l~~L~~L~ls~N~  119 (183)
                      |..+++|+.+++.+|.
T Consensus       267 F~~c~~L~~l~l~~~~  282 (401)
T 4fdw_A          267 FYYCPELAEVTTYGST  282 (401)
T ss_dssp             TTTCTTCCEEEEESSC
T ss_pred             hhCCCCCCEEEeCCcc
Confidence            5555556666555544

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=92.27  E-value=0.036  Score=41.78  Aligned_cols=60  Identities=3%  Similarity=0.030  Sum_probs=44.6

Q ss_pred             CCCcEEeccCCCCccccCCccccCCCCCCEEEccCCc-cccCCCCCcccc----ccccEEEcccCC
Q 046467          108 PNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNN-LTGKLPNFTVTY----YIFYKIVLMLSA  168 (183)
Q Consensus       108 ~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~-l~G~iP~~l~~l----~~L~~L~L~~n~  168 (183)
                      -+|+.||++++. ++..=-..+..+++|++|+|+++. ++..-=..++.+    ++|+.|+|+...
T Consensus        61 ~~L~~LDLs~~~-Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~  125 (176)
T 3e4g_A           61 YKIQAIDATDSC-IMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCG  125 (176)
T ss_dssp             CCEEEEEEESCC-CCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCT
T ss_pred             ceEeEEeCcCCC-ccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCC
Confidence            369999999998 875444557889999999999985 654322335553    479999998754

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=92.10  E-value=0.055  Score=45.11  Aligned_cols=65  Identities=6%  Similarity=0.013  Sum_probs=40.9

Q ss_pred             CCCCCcEEeccC--CCCcccc-----CCccc--cCCCCCCEEEccCCccccCCCCCcc---ccccccEEEcccCCccc
Q 046467          106 CFPNLRSFKIRS--NYLLSGS-----IPSEI--TVLSTIRTLELTSNNLTGKLPNFTV---TYYIFYKIVLMLSAGVC  171 (183)
Q Consensus       106 ~l~~L~~L~ls~--N~~l~G~-----iP~~~--~~l~~L~~L~Ls~N~l~G~iP~~l~---~l~~L~~L~L~~n~~~~  171 (183)
                      .+++|++|+|+.  |. ..|.     +-..+  ..+++|++|+|.+|.+++..+..+.   .+++|++|+|+.|.+..
T Consensus       217 ~lp~L~~L~L~~~~~~-~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d  293 (362)
T 2ra8_A          217 DLPNLEKLVLYVGVED-YGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTD  293 (362)
T ss_dssp             BCTTCCEEEEECBCGG-GTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBH
T ss_pred             cCCCCcEEEEeccccc-cccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCCh
Confidence            577888887753  22 1111     11112  2467888888888888765544343   47888999998887764

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=89.00  E-value=0.69  Score=37.71  Aligned_cols=60  Identities=12%  Similarity=0.057  Sum_probs=38.9

Q ss_pred             CCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCC-CccccccccEEEccc
Q 046467          104 FSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPN-FTVTYYIFYKIVLML  166 (183)
Q Consensus       104 ~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~-~l~~l~~L~~L~L~~  166 (183)
                      |..+++|+.+.+.++. ++-.=...|.++.+|+.++|.++ ++ .|+. .+.++++|+.+.+..
T Consensus       282 F~~c~~L~~i~l~~~~-i~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~C~~L~~i~ip~  342 (379)
T 4h09_A          282 CSGCSNLTKVVMDNSA-IETLEPRVFMDCVKLSSVTLPTA-LK-TIQVYAFKNCKALSTISYPK  342 (379)
T ss_dssp             TTTCTTCCEEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CC-EECTTTTTTCTTCCCCCCCT
T ss_pred             cccccccccccccccc-cceehhhhhcCCCCCCEEEcCcc-cc-EEHHHHhhCCCCCCEEEECC
Confidence            5667777777777776 66322345777788888887654 43 3443 466777777777643

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=87.71  E-value=0.22  Score=38.13  Aligned_cols=84  Identities=17%  Similarity=0.122  Sum_probs=51.8

Q ss_pred             CCEEEEEeCccCCCcccCCcC--Ccc--CCCCCCCcEEeccCCCCcccc----CCccccCCCCCCEEEccCCccccCCCC
Q 046467           80 GSVIGVSLLWYENDNIIGELG--RFK--FSCFPNLRSFKIRSNYLLSGS----IPSEITVLSTIRTLELTSNNLTGKLPN  151 (183)
Q Consensus        80 ~~v~~L~l~~l~~g~l~~~~g--~l~--~~~l~~L~~L~ls~N~~l~G~----iP~~~~~l~~L~~L~Ls~N~l~G~iP~  151 (183)
                      ..++.|++.+.  ..+... |  .+-  +..-+.|+.|+|++|. +...    |-+.+..-+.|++|+|++|.++..=-.
T Consensus        41 ~~L~~L~L~~n--n~igd~-ga~~la~aL~~N~~L~~L~L~~n~-igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~  116 (197)
T 1pgv_A           41 TDLKEVNINNM--KRVSKE-RIRSLIEAACNSKHIEKFSLANTA-ISDSEARGLIELIETSPSLRVLNVESNFLTPELLA  116 (197)
T ss_dssp             SSCCEEECTTC--CSSCHH-HHHHHHHHHTTCSCCCEEECTTSC-CBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred             CCccEEECCCC--CCCCHH-HHHHHHHHHhhCCCcCEEEccCCC-CChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence            46788888642  122111 1  000  4556789999999999 7632    222344568899999999998743211


Q ss_pred             ----CccccccccEEEcccC
Q 046467          152 ----FTVTYYIFYKIVLMLS  167 (183)
Q Consensus       152 ----~l~~l~~L~~L~L~~n  167 (183)
                          .+..-+.|+.|+|++|
T Consensus       117 ala~aL~~N~tL~~L~L~n~  136 (197)
T 1pgv_A          117 RLLRSTLVTQSIVEFKADNQ  136 (197)
T ss_dssp             HHHHHTTTTCCCSEEECCCC
T ss_pred             HHHHHHhhCCceeEEECCCC
Confidence                2333456999999754

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=86.77  E-value=1.1  Score=36.88  Aligned_cols=59  Identities=15%  Similarity=0.149  Sum_probs=37.1

Q ss_pred             CCCCCCCcEEeccCCCCccccCC-ccccCCCCCCEEEccCCccccCCC-CCccccccccEEEcccC
Q 046467          104 FSCFPNLRSFKIRSNYLLSGSIP-SEITVLSTIRTLELTSNNLTGKLP-NFTVTYYIFYKIVLMLS  167 (183)
Q Consensus       104 ~~~l~~L~~L~ls~N~~l~G~iP-~~~~~l~~L~~L~Ls~N~l~G~iP-~~l~~l~~L~~L~L~~n  167 (183)
                      |..+.+|+.+++..+  ++ .|+ ..|.++++|+.+++..| ++ .|+ ..+.++++|+.+++..+
T Consensus       316 F~~c~~L~~i~lp~~--v~-~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~C~~L~~i~lp~~  376 (394)
T 4fs7_A          316 FESCTSLVSIDLPYL--VE-EIGKRSFRGCTSLSNINFPLS-LR-KIGANAFQGCINLKKVELPKR  376 (394)
T ss_dssp             TTTCTTCCEECCCTT--CC-EECTTTTTTCTTCCEECCCTT-CC-EECTTTBTTCTTCCEEEEEGG
T ss_pred             hcCCCCCCEEEeCCc--cc-EEhHHhccCCCCCCEEEECcc-cc-EehHHHhhCCCCCCEEEECCC
Confidence            566667777777533  44 343 45667777888777665 44 344 35667778888777544

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=86.22  E-value=1.7  Score=35.69  Aligned_cols=60  Identities=18%  Similarity=0.241  Sum_probs=36.9

Q ss_pred             CCCCCCCcEEeccCCCCccccCC-ccccCCCCCCEEEccCCccccCCCC-CccccccccEEEcccCC
Q 046467          104 FSCFPNLRSFKIRSNYLLSGSIP-SEITVLSTIRTLELTSNNLTGKLPN-FTVTYYIFYKIVLMLSA  168 (183)
Q Consensus       104 ~~~l~~L~~L~ls~N~~l~G~iP-~~~~~l~~L~~L~Ls~N~l~G~iP~-~l~~l~~L~~L~L~~n~  168 (183)
                      |..+.+|+.+++..+  ++ .|. ..|.+|++|+.+.+..+ ++ .|+. .+.++++|+.+++..+.
T Consensus       307 F~~c~~L~~i~lp~~--v~-~I~~~aF~~C~~L~~i~ip~s-v~-~I~~~aF~~C~~L~~i~~~~~~  368 (394)
T 4gt6_A          307 FAGCISLKSIDIPEG--IT-QILDDAFAGCEQLERIAIPSS-VT-KIPESAFSNCTALNNIEYSGSR  368 (394)
T ss_dssp             TTTCTTCCEEECCTT--CC-EECTTTTTTCTTCCEEEECTT-CC-BCCGGGGTTCTTCCEEEESSCH
T ss_pred             ecCCCCcCEEEeCCc--cc-EehHhHhhCCCCCCEEEECcc-cC-EEhHhHhhCCCCCCEEEECCce
Confidence            555666777666543  33 233 34667777777777654 43 3543 46677888888776654

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=81.12  E-value=0.39  Score=36.72  Aligned_cols=84  Identities=14%  Similarity=0.163  Sum_probs=49.6

Q ss_pred             CCEEEEEeCccCCCcccCCcCCcc----CCCCCCCcEEeccCCCCcccc----CCccccCCCCCCEEEccCCc---cccC
Q 046467           80 GSVIGVSLLWYENDNIIGELGRFK----FSCFPNLRSFKIRSNYLLSGS----IPSEITVLSTIRTLELTSNN---LTGK  148 (183)
Q Consensus        80 ~~v~~L~l~~l~~g~l~~~~g~l~----~~~l~~L~~L~ls~N~~l~G~----iP~~~~~l~~L~~L~Ls~N~---l~G~  148 (183)
                      ..++.|++.+.+   +... |...    +..-+.|+.|+|++|. ++..    |-+.+..-+.|++|+|++|.   +...
T Consensus        70 ~~L~~L~L~~n~---igd~-ga~alA~aL~~N~tL~~L~L~~N~-Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~  144 (197)
T 1pgv_A           70 KHIEKFSLANTA---ISDS-EARGLIELIETSPSLRVLNVESNF-LTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQ  144 (197)
T ss_dssp             SCCCEEECTTSC---CBHH-HHTTHHHHHHHCSSCCEEECCSSB-CCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHH
T ss_pred             CCcCEEEccCCC---CChH-HHHHHHHHHhcCCccCeEecCCCc-CCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHH
Confidence            467888887432   2111 1111    3345679999999999 7643    22345556779999998652   2221


Q ss_pred             ----CCCCccccccccEEEcccCC
Q 046467          149 ----LPNFTVTYYIFYKIVLMLSA  168 (183)
Q Consensus       149 ----iP~~l~~l~~L~~L~L~~n~  168 (183)
                          |-..+..-+.|+.|+++.|.
T Consensus       145 g~~~ia~aL~~N~tL~~L~l~~~~  168 (197)
T 1pgv_A          145 VEMDMMMAIEENESLLRVGISFAS  168 (197)
T ss_dssp             HHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             HHHHHHHHHHhCCCcCeEeccCCC
Confidence                11223344788899987654

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=80.13  E-value=4.3  Score=32.88  Aligned_cols=60  Identities=8%  Similarity=0.185  Sum_probs=41.9

Q ss_pred             CCCCCCCcEEeccCCCCccccCC-ccccCCCCCCEEEccCCccccCCC-CCccccccccEEEcccC
Q 046467          104 FSCFPNLRSFKIRSNYLLSGSIP-SEITVLSTIRTLELTSNNLTGKLP-NFTVTYYIFYKIVLMLS  167 (183)
Q Consensus       104 ~~~l~~L~~L~ls~N~~l~G~iP-~~~~~l~~L~~L~Ls~N~l~G~iP-~~l~~l~~L~~L~L~~n  167 (183)
                      +.....|+.+.+..+  +. .++ ..+..+++|+.+.+.++.++ .|+ ..+.++++|+.+.|..+
T Consensus       259 F~~~~~l~~i~l~~~--i~-~i~~~aF~~c~~L~~i~l~~~~i~-~I~~~aF~~c~~L~~i~lp~~  320 (379)
T 4h09_A          259 LQNCTALKTLNFYAK--VK-TVPYLLCSGCSNLTKVVMDNSAIE-TLEPRVFMDCVKLSSVTLPTA  320 (379)
T ss_dssp             TTTCTTCCEEEECCC--CS-EECTTTTTTCTTCCEEEECCTTCC-EECTTTTTTCTTCCEEECCTT
T ss_pred             cceeehhcccccccc--ce-eccccccccccccccccccccccc-eehhhhhcCCCCCCEEEcCcc
Confidence            555666777766543  33 233 35778899999999888777 454 46778999999988644

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	183
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	3e-05
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	6e-04
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	0.004

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 40.9 bits (94), Expect = 3e-05
 Identities = 18/101 (17%), Positives = 33/101 (32%), Gaps = 1/101 (0%)

Query: 53  WWVNNWATTGNYTSDHCKWTGISCNSAGSVIGVSLLWYENDNIIGELGRFKFSCFPNLRS 112
                +A       D  +       S       +                K     NL  
Sbjct: 189 KIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNG 248

Query: 113 FKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFT 153
             +R+N +  G++P  +T L  + +L ++ NNL G++P   
Sbjct: 249 LDLRNNRI-YGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGG 288

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 37.4 bits (85), Expect = 6e-04
 Identities = 24/106 (22%), Positives = 39/106 (36%), Gaps = 5/106 (4%)

Query: 44  EREALLA--TGWWVNNWATTGNYTSDHC--KWTGISCNSAGSVIGVSLLWYENDNIIGEL 99
           +++ALL            ++   T+D C   W G+ C++      V+ L     N+    
Sbjct: 7   DKQALLQIKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPY 66

Query: 100 GRFK-FSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNN 144
                 +  P L    I     L G IP  I  L+ +  L +T  N
Sbjct: 67  PIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTN 112

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 34.6 bits (78), Expect = 0.004
 Identities = 14/93 (15%), Positives = 29/93 (31%), Gaps = 6/93 (6%)

Query: 58  WATTGNYTSDHCKWTGISCNSAGSVIGVSLLWYENDNIIGELGRFKFSCFPNLRSFKIRS 117
              T     +  +      +   ++  ++ L    +NI         S    L+     +
Sbjct: 282 AGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP---VSSLTKLQRLFFAN 338

Query: 118 NYLLSGSIPSEITVLSTIRTLELTSNNLTGKLP 150
           N +   S  S +  L+ I  L    N ++   P
Sbjct: 339 NKV---SDVSSLANLTNINWLSAGHNQISDLTP 368

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	183
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.83
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.27
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.18
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.09
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.06
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	98.95
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	98.89
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	98.86
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	98.82
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	98.7
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	98.68
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.65
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	98.64
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	98.64
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	98.59
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	98.43
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	98.39
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	98.38
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	98.31
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.3
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	98.22
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.19
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	98.17
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.09
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.03
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	97.92
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	97.82
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	97.82
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	97.68
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	97.67
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.63
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	97.46
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	96.9
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	96.81
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	96.74
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	96.54
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	95.94
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	95.94
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	94.18
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	93.64
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	85.57
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	85.23

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.83  E-value=1.5e-21  Score=158.31  Aligned_cols=128  Identities=21%  Similarity=0.310  Sum_probs=97.3

Q ss_pred             CCCchhHHHHHHHHcCCCCCCCCCCCCC-CCCCCC--ccccceeCCC---CCEEEEEeCccC-CC--cccCCcCCccCCC
Q 046467           36 LLSSPIQLEREALLATGWWVNNWATTGN-YTSDHC--KWTGISCNSA---GSVIGVSLLWYE-ND--NIIGELGRFKFSC  106 (183)
Q Consensus        36 ~~~~~l~~~~~~l~~~~~~~~~~~~~~W-~~~~~C--~w~gv~C~~~---~~v~~L~l~~l~-~g--~l~~~~g~l~~~~  106 (183)
                      +|.++|.++|+++.++.      .+.+| .++|||  .|.||.|+..   ++|++|++.+.+ .|  .+|++     +++
T Consensus         6 ~e~~aLl~~k~~~~~~~------~l~sW~~~~d~C~~~w~gv~C~~~~~~~~v~~L~L~~~~l~g~~~lp~~-----l~~   74 (313)
T d1ogqa_           6 QDKQALLQIKKDLGNPT------TLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSS-----LAN   74 (313)
T ss_dssp             HHHHHHHHHHHHTTCCG------GGTTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGG-----GGG
T ss_pred             HHHHHHHHHHHHCCCCC------cCCCCCCCCCCCCCcCCCeEEeCCCCcEEEEEEECCCCCCCCCCCCChH-----Hhc
Confidence            44556666666654322      27788 578999  5999999864   379999998653 33  46666     778


Q ss_pred             CCCCcEEeccC-CCCccccCCccccCCCCCCEEEccCCccccCCCCCccccccccEEEcccCCcccccCC
Q 046467          107 FPNLRSFKIRS-NYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIFYKIVLMLSAGVCFYNA  175 (183)
Q Consensus       107 l~~L~~L~ls~-N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~~~~~~~~  175 (183)
                      +++|++|++++ |+ ++|.||++|+++++|++|+|++|++.|..|..+.++++|+.++++.|+..+.+|.
T Consensus        75 L~~L~~L~Ls~~N~-l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~  143 (313)
T d1ogqa_          75 LPYLNFLYIGGINN-LVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPP  143 (313)
T ss_dssp             CTTCSEEEEEEETT-EESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCG
T ss_pred             Cccccccccccccc-cccccccccccccccchhhhccccccccccccccchhhhcccccccccccccCch
Confidence            88999999986 78 9999999999999999999888888887777777777777777777777666654

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.27  E-value=6.7e-13  Score=106.55  Aligned_cols=73  Identities=23%  Similarity=0.387  Sum_probs=63.6

Q ss_pred             CCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCccccccccEEEcccCCcccccCCcccc
Q 046467          104 FSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIFYKIVLMLSAGVCFYNAEEVC  179 (183)
Q Consensus       104 ~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~~~~~~~~e~~~  179 (183)
                      ++.+++|++|++++|+ ++|.+|+.++++++|++|+|++|+|+|.||. ++++++|+.+++.+|+..|..|.. .|
T Consensus       240 ~~~~~~L~~L~Ls~N~-l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~-~~~L~~L~~l~l~~N~~l~g~plp-~c  312 (313)
T d1ogqa_         240 VGLSKNLNGLDLRNNR-IYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNKCLCGSPLP-AC  312 (313)
T ss_dssp             CCCCTTCCEEECCSSC-CEECCCGGGGGCTTCCEEECCSSEEEEECCC-STTGGGSCGGGTCSSSEEESTTSS-CC
T ss_pred             cccccccccccCccCe-ecccCChHHhCCCCCCEEECcCCcccccCCC-cccCCCCCHHHhCCCccccCCCCC-CC
Confidence            6778899999999999 9999999999999999999999999999984 788999999999999977665543 44

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.18  E-value=3.6e-11  Score=90.39  Aligned_cols=70  Identities=14%  Similarity=0.183  Sum_probs=46.9

Q ss_pred             CCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCccccccccEEEcccCCcccccC
Q 046467          104 FSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIFYKIVLMLSAGVCFYN  174 (183)
Q Consensus       104 ~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~~~~~~~  174 (183)
                      +..+++|++|++++|+ +++..|..|.++++|++|+|++|++++..|..+.++++|++|+|++|++.|.++
T Consensus        74 ~~~~~~L~~L~Ls~N~-l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~  143 (192)
T d1w8aa_          74 FEGASHIQELQLGENK-IKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH  143 (192)
T ss_dssp             TTTCTTCCEEECCSCC-CCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred             cccccccceeeecccc-ccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccccc
Confidence            5556667777777777 775555566677777777777777776555566677777777777777766543

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.09  E-value=3e-10  Score=83.02  Aligned_cols=68  Identities=22%  Similarity=0.200  Sum_probs=61.3

Q ss_pred             CCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCccccccccEEEcccCCccccc
Q 046467          104 FSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIFYKIVLMLSAGVCFY  173 (183)
Q Consensus       104 ~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~~~~~~  173 (183)
                      |..+++|+.|++++|+ ++..-|..|..+++|++|+|++|+++ .+|..+....+|+.|+|++|++.|-+
T Consensus        52 f~~l~~L~~L~Ls~N~-l~~i~~~~f~~l~~L~~L~Ls~N~l~-~l~~~~~~~~~l~~L~L~~Np~~C~C  119 (156)
T d2ifga3          52 LRGLGELRNLTIVKSG-LRFVAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLHCSC  119 (156)
T ss_dssp             SCSCCCCSEEECCSSC-CCEECTTGGGSCSCCCEEECCSSCCS-CCCSTTTCSCCCCEEECCSSCCCCCG
T ss_pred             hccccccCcceeeccc-cCCcccccccccccccceeccCCCCc-ccChhhhccccccccccCCCcccCCc
Confidence            7889999999999999 99877788999999999999999999 78887777778999999999998743

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.06  E-value=2.4e-10  Score=85.68  Aligned_cols=102  Identities=18%  Similarity=0.203  Sum_probs=80.2

Q ss_pred             CccccceeCCC----------CCEEEEEeCccCCCcccCCcCCccCCCCCCCcEEeccCCCCccccCCccccCCCCCCEE
Q 046467           69 CKWTGISCNSA----------GSVIGVSLLWYENDNIIGELGRFKFSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTL  138 (183)
Q Consensus        69 C~w~gv~C~~~----------~~v~~L~l~~l~~g~l~~~~g~l~~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L  138 (183)
                      |.|..|.|+..          ..++.|++++.   .+...+..-.|..+++|+.|++++|+ +.+..+..+..+++|++|
T Consensus         8 C~~~~v~Cs~~~L~~iP~~lp~~l~~L~Ls~N---~i~~~~~~~~f~~l~~L~~L~L~~N~-i~~~~~~~~~~~~~L~~L   83 (192)
T d1w8aa_           8 CEGTTVDCTGRGLKEIPRDIPLHTTELLLNDN---ELGRISSDGLFGRLPHLVKLELKRNQ-LTGIEPNAFEGASHIQEL   83 (192)
T ss_dssp             EETTEEECTTSCCSSCCSCCCTTCSEEECCSC---CCCSBCCSCSGGGCTTCCEEECCSSC-CCCBCTTTTTTCTTCCEE
T ss_pred             EcCCEEEEeCCCcCccCCCCCCCCCEEEeCCC---CCcccccccccCCCceEeeeeccccc-ccccccccccccccccee
Confidence            45677777632          25678888744   33221111127889999999999999 999888999999999999


Q ss_pred             EccCCccccCCCCCccccccccEEEcccCCcccccC
Q 046467          139 ELTSNNLTGKLPNFTVTYYIFYKIVLMLSAGVCFYN  174 (183)
Q Consensus       139 ~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~~~~~~~  174 (183)
                      +|++|++++..|..+.++++|+.|+|++|++..-.|
T Consensus        84 ~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~  119 (192)
T d1w8aa_          84 QLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMP  119 (192)
T ss_dssp             ECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECT
T ss_pred             eeccccccccCHHHHhCCCcccccccCCccccccCH
Confidence            999999997767778999999999999999986433

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.95  E-value=1.3e-09  Score=85.44  Aligned_cols=68  Identities=19%  Similarity=0.199  Sum_probs=63.1

Q ss_pred             CCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCccccccccEEEcccCCccccc
Q 046467          104 FSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIFYKIVLMLSAGVCFY  173 (183)
Q Consensus       104 ~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~~~~~~  173 (183)
                      +..+++|+.+++++|+ +++..+..+..+++|++|+|++|+|+ .||+++..+++|+.|+|++|++.|.+
T Consensus       144 ~~~l~~l~~l~l~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~CdC  211 (266)
T d1p9ag_         144 LTPTPKLEKLSLANNN-LTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNC  211 (266)
T ss_dssp             TTTCTTCCEEECTTSC-CSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCSG
T ss_pred             ccccccchhccccccc-ccccCccccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCCCCCc
Confidence            5678899999999999 99877788999999999999999999 89999999999999999999999864

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.89  E-value=1.7e-09  Score=76.02  Aligned_cols=85  Identities=14%  Similarity=0.050  Sum_probs=63.1

Q ss_pred             CCEEEEEeCccCCCcccCCcCCccCCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCC-CCCcccccc
Q 046467           80 GSVIGVSLLWYENDNIIGELGRFKFSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKL-PNFTVTYYI  158 (183)
Q Consensus        80 ~~v~~L~l~~l~~g~l~~~~g~l~~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~i-P~~l~~l~~  158 (183)
                      ..++.|++++..-..+|+.     ++.+++|+.|++++|. +++ +| .++.+++|++|++++|+++..- +..+..+++
T Consensus        20 ~~L~~L~ls~N~l~~lp~~-----~~~l~~L~~L~l~~N~-i~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~~~~   91 (124)
T d1dcea3          20 LLVTHLDLSHNRLRALPPA-----LAALRCLEVLQASDNA-LEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPR   91 (124)
T ss_dssp             TTCCEEECCSSCCCCCCGG-----GGGCTTCCEEECCSSC-CCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTT
T ss_pred             CCCCEEECCCCccCcchhh-----hhhhhccccccccccc-ccc-cC-ccccccccCeEECCCCccCCCCCchhhcCCCC
Confidence            3577788875433445443     6778889999999998 884 44 4888889999999999887432 246788889


Q ss_pred             ccEEEcccCCcccc
Q 046467          159 FYKIVLMLSAGVCF  172 (183)
Q Consensus       159 L~~L~L~~n~~~~~  172 (183)
                      |+.|++++|++...
T Consensus        92 L~~L~l~~N~i~~~  105 (124)
T d1dcea3          92 LVLLNLQGNSLCQE  105 (124)
T ss_dssp             CCEEECTTSGGGGS
T ss_pred             CCEEECCCCcCCcC
Confidence            99999999888744

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.86  E-value=1.4e-09  Score=85.75  Aligned_cols=71  Identities=21%  Similarity=0.199  Sum_probs=60.6

Q ss_pred             CCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCccccccccEEEcccCCcccccCC
Q 046467          104 FSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIFYKIVLMLSAGVCFYNA  175 (183)
Q Consensus       104 ~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~~~~~~~~  175 (183)
                      +..+++|+++++++|+ +++..|..|..+++|++||+++|++++..|..++++++|+.|+|++|++.|.++.
T Consensus       173 f~~l~~L~~l~l~~N~-l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C~~  243 (284)
T d1ozna_         173 FRGLHSLDRLLLHQNR-VAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRA  243 (284)
T ss_dssp             TTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGG
T ss_pred             hccccccchhhhhhcc-ccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCCCccc
Confidence            6778888899999888 8888888888888999999999999887777788888999999999988887654

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.82  E-value=7.7e-09  Score=72.55  Aligned_cols=69  Identities=12%  Similarity=0.145  Sum_probs=61.1

Q ss_pred             CCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCccccccccEEEcccCCcccccCCc
Q 046467          104 FSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIFYKIVLMLSAGVCFYNAE  176 (183)
Q Consensus       104 ~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~~~~~~~~e  176 (183)
                      +..+++|++|++++|. ++ .+|+.++.+++|++|++++|.+++ +| .+.++++|+.|++++|++....+.+
T Consensus        16 l~~l~~L~~L~ls~N~-l~-~lp~~~~~l~~L~~L~l~~N~i~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~   84 (124)
T d1dcea3          16 LEQLLLVTHLDLSHNR-LR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQ   84 (124)
T ss_dssp             GGGGTTCCEEECCSSC-CC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTG
T ss_pred             cccCCCCCEEECCCCc-cC-cchhhhhhhhcccccccccccccc-cC-ccccccccCeEECCCCccCCCCCch
Confidence            6788899999999999 98 689999999999999999999984 66 5999999999999999998664433

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.70  E-value=3.3e-08  Score=78.09  Aligned_cols=65  Identities=18%  Similarity=0.173  Sum_probs=50.8

Q ss_pred             CCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCccccccccEEEcccCCcc
Q 046467          104 FSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIFYKIVLMLSAGV  170 (183)
Q Consensus       104 ~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~~~  170 (183)
                      +..++.+++|++++|. +++..|..+.++++|++|+|++|+++ .||..+.++++|+.|+|++|+++
T Consensus       191 ~~~~~~l~~L~~s~n~-l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~  255 (305)
T d1xkua_         191 LKGLNNLAKLGLSFNS-ISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS  255 (305)
T ss_dssp             GTTCTTCCEEECCSSC-CCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCC
T ss_pred             hhcccccccccccccc-ccccccccccccccceeeeccccccc-ccccccccccCCCEEECCCCccC
Confidence            6667778888888887 77766777777888888888888887 57777888888888888887766

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.68  E-value=2.4e-08  Score=73.06  Aligned_cols=65  Identities=15%  Similarity=0.174  Sum_probs=41.5

Q ss_pred             CCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCC--CCccccccccEEEcccCCcc
Q 046467          104 FSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLP--NFTVTYYIFYKIVLMLSAGV  170 (183)
Q Consensus       104 ~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP--~~l~~l~~L~~L~L~~n~~~  170 (183)
                      +..+++|++|++++|. ++...+..+..+++|++|++++|+++. ++  ..+..+++|+.|++++|++.
T Consensus        59 ~~~l~~L~~L~ls~N~-i~~l~~~~~~~l~~L~~L~L~~N~i~~-~~~l~~l~~l~~L~~L~l~~N~i~  125 (162)
T d1a9na_          59 FPLLRRLKTLLVNNNR-ICRIGEGLDQALPDLTELILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVT  125 (162)
T ss_dssp             CCCCSSCCEEECCSSC-CCEECSCHHHHCTTCCEEECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGG
T ss_pred             cccCcchhhhhccccc-ccCCCccccccccccccceeccccccc-cccccccccccccchhhcCCCccc
Confidence            5566677777777777 764333334557777777777777653 33  24666777777777777664

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.65  E-value=6.4e-08  Score=70.24  Aligned_cols=71  Identities=15%  Similarity=0.070  Sum_probs=59.1

Q ss_pred             CCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCccccccccEEEcccCCcccccCC
Q 046467          104 FSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIFYKIVLMLSAGVCFYNA  175 (183)
Q Consensus       104 ~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~~~~~~~~  175 (183)
                      +..+++|+.|++++|+.++..-+..|.++++|+.|++++|+++.--|..+..+++|+.|+|+.|++. ++|.
T Consensus        27 l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~-~l~~   97 (156)
T d2ifga3          27 LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALE-SLSW   97 (156)
T ss_dssp             SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCS-CCCS
T ss_pred             ccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCCCCc-ccCh
Confidence            6678899999997663177544567999999999999999999766777999999999999999998 4443

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.64  E-value=3.8e-08  Score=77.26  Aligned_cols=69  Identities=16%  Similarity=0.133  Sum_probs=61.3

Q ss_pred             CCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCccccccccEEEcccCCccccc
Q 046467          104 FSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIFYKIVLMLSAGVCFY  173 (183)
Q Consensus       104 ~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~~~~~~  173 (183)
                      +..+++|+.|++++|+ +++..|..+..+++|+++++++|++++..|..+.++++|++|++++|.+.+..
T Consensus       149 f~~~~~L~~L~l~~N~-l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~  217 (284)
T d1ozna_         149 FRDLGNLTHLFLHGNR-ISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALP  217 (284)
T ss_dssp             TTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred             hccccchhhcccccCc-ccccchhhhccccccchhhhhhccccccChhHhhhhhhccccccccccccccc
Confidence            6678889999999999 99877788889999999999999999988999999999999999999988653

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.64  E-value=6.3e-08  Score=76.43  Aligned_cols=62  Identities=15%  Similarity=0.191  Sum_probs=39.3

Q ss_pred             CCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCccccccccEEEcccCCcc
Q 046467          108 PNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIFYKIVLMLSAGV  170 (183)
Q Consensus       108 ~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~~~  170 (183)
                      +.+++|++++|+ ++...+..|.++++|++|++++|.+....|..+.++++|++|++++|++.
T Consensus        31 ~~l~~L~Ls~N~-i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~   92 (305)
T d1xkua_          31 PDTALLDLQNNK-ITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK   92 (305)
T ss_dssp             TTCCEEECCSSC-CCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS
T ss_pred             CCCCEEECcCCc-CCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCCccC
Confidence            456666776666 66322335666666777777766666555556666666777776666654

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.59  E-value=1.4e-07  Score=73.55  Aligned_cols=70  Identities=17%  Similarity=0.149  Sum_probs=59.2

Q ss_pred             CCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCccccccccEEEcccCCcccccCC
Q 046467          104 FSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIFYKIVLMLSAGVCFYNA  175 (183)
Q Consensus       104 ~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~~~~~~~~  175 (183)
                      +..+.+++.|++++|. +++..+..+..++.|+++++++|++++..|..+..+++|++|+|++|++. .+|.
T Consensus       120 ~~~l~~l~~L~l~~n~-l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~  189 (266)
T d1p9ag_         120 LRGLGELQELYLKGNE-LKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPK  189 (266)
T ss_dssp             TTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCT
T ss_pred             cccccccccccccccc-cceeccccccccccchhcccccccccccCccccccccccceeecccCCCc-ccCh
Confidence            5567788888888888 88655566778999999999999999877778899999999999999998 6664

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.43  E-value=1.3e-07  Score=76.01  Aligned_cols=74  Identities=11%  Similarity=0.088  Sum_probs=47.5

Q ss_pred             CCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCccccccccEEEcccCCcccccCCccccccC
Q 046467          104 FSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIFYKIVLMLSAGVCFYNAEEVCAVR  182 (183)
Q Consensus       104 ~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~~~~~~~~e~~~~~~  182 (183)
                      +..+++++.|++++|+ +++. + .+..+++|++|++++|++++ +| .++++++|++|+|++|++.+..|.+.+..+|
T Consensus       303 ~~~~~~l~~L~ls~n~-l~~l-~-~l~~l~~L~~L~L~~n~l~~-l~-~l~~l~~L~~L~l~~N~l~~l~~l~~l~~L~  376 (384)
T d2omza2         303 ISNLKNLTYLTLYFNN-ISDI-S-PVSSLTKLQRLFFANNKVSD-VS-SLANLTNINWLSAGHNQISDLTPLANLTRIT  376 (384)
T ss_dssp             GGGCTTCSEEECCSSC-CSCC-G-GGGGCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECCSSCCCBCGGGTTCTTCS
T ss_pred             cchhcccCeEECCCCC-CCCC-c-ccccCCCCCEEECCCCCCCC-Ch-hHcCCCCCCEEECCCCcCCCChhhccCCCCC
Confidence            4556667777777777 7653 2 26667777777777777764 33 4677777777777777776665555544444

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.39  E-value=1.7e-07  Score=75.32  Aligned_cols=60  Identities=18%  Similarity=0.215  Sum_probs=51.9

Q ss_pred             CCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCccccccccEEEcccCC
Q 046467          104 FSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIFYKIVLMLSA  168 (183)
Q Consensus       104 ~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~  168 (183)
                      +..+++|++|++++|+ +++ +| .+.++++|++|++++|++++-.|  +.++++|+.|+|++|.
T Consensus       325 l~~l~~L~~L~L~~n~-l~~-l~-~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~Na  384 (384)
T d2omza2         325 VSSLTKLQRLFFANNK-VSD-VS-SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQA  384 (384)
T ss_dssp             GGGCTTCCEEECCSSC-CCC-CG-GGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEECCCEE
T ss_pred             cccCCCCCEEECCCCC-CCC-Ch-hHcCCCCCCEEECCCCcCCCChh--hccCCCCCEeeCCCCc
Confidence            6788999999999999 985 44 68899999999999999997554  8899999999999873

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.38  E-value=2.4e-07  Score=67.50  Aligned_cols=84  Identities=12%  Similarity=0.089  Sum_probs=65.5

Q ss_pred             CCEEEEEeCccCCCcccCCcCCccCCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCC-cccccc
Q 046467           80 GSVIGVSLLWYENDNIIGELGRFKFSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNF-TVTYYI  158 (183)
Q Consensus        80 ~~v~~L~l~~l~~g~l~~~~g~l~~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~-l~~l~~  158 (183)
                      -.+..|++.+.+-..+++.     +..+++|+.|++++|. ++ .++ .+..+++|++|++++|+++. +|+. +..+++
T Consensus        18 ~~lr~L~L~~n~I~~i~~~-----~~~l~~L~~L~Ls~N~-i~-~l~-~~~~l~~L~~L~ls~N~i~~-l~~~~~~~l~~   88 (162)
T d1a9na_          18 VRDRELDLRGYKIPVIENL-----GATLDQFDAIDFSDNE-IR-KLD-GFPLLRRLKTLLVNNNRICR-IGEGLDQALPD   88 (162)
T ss_dssp             TSCEEEECTTSCCCSCCCG-----GGGTTCCSEEECCSSC-CC-EEC-CCCCCSSCCEEECCSSCCCE-ECSCHHHHCTT
T ss_pred             CcCcEEECCCCCCCccCcc-----ccccccCCEEECCCCC-CC-ccC-CcccCcchhhhhcccccccC-CCccccccccc
Confidence            3567888875533334322     4678899999999999 98 454 58899999999999999985 5554 567999


Q ss_pred             ccEEEcccCCcccc
Q 046467          159 FYKIVLMLSAGVCF  172 (183)
Q Consensus       159 L~~L~L~~n~~~~~  172 (183)
                      |+.|++++|++...
T Consensus        89 L~~L~L~~N~i~~~  102 (162)
T d1a9na_          89 LTELILTNNSLVEL  102 (162)
T ss_dssp             CCEEECCSCCCCCG
T ss_pred             cccceecccccccc
Confidence            99999999998754

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.31  E-value=4.1e-07  Score=68.92  Aligned_cols=73  Identities=14%  Similarity=0.149  Sum_probs=56.1

Q ss_pred             CCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCccccccccEEEcccCCcccccCCcccccc
Q 046467          104 FSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIFYKIVLMLSAGVCFYNAEEVCAV  181 (183)
Q Consensus       104 ~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~~~~~~~~e~~~~~  181 (183)
                      +...++|+.|++++|. +++..  .++++++|++|++++|++++ +|+ +.++++|+.|+|++|++....|.+.+-.+
T Consensus       147 ~~~~~~L~~L~l~~n~-~~~~~--~l~~l~~L~~L~Ls~n~l~~-l~~-l~~l~~L~~L~Ls~N~lt~i~~l~~l~~L  219 (227)
T d1h6ua2         147 LAGLTNLQYLSIGNAQ-VSDLT--PLANLSKLTTLKADDNKISD-ISP-LASLPNLIEVHLKNNQISDVSPLANTSNL  219 (227)
T ss_dssp             GGGCTTCCEEECCSSC-CCCCG--GGTTCTTCCEEECCSSCCCC-CGG-GGGCTTCCEEECTTSCCCBCGGGTTCTTC
T ss_pred             hccccccccccccccc-cccch--hhcccccceecccCCCccCC-Chh-hcCCCCCCEEECcCCcCCCCcccccCCCC
Confidence            5677788999998888 77432  37888999999999999885 543 88889999999999988766555544443

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.30  E-value=9.1e-07  Score=65.90  Aligned_cols=63  Identities=14%  Similarity=0.160  Sum_probs=44.4

Q ss_pred             CCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCccccccccEEEcccCCccc
Q 046467          104 FSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIFYKIVLMLSAGVC  171 (183)
Q Consensus       104 ~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~~~~  171 (183)
                      +.++++|++|++++|. +.. +| .+..++.|++|++++|.+...  +.+..+++|+.|++++|++..
T Consensus        80 l~~l~~L~~L~l~~n~-~~~-~~-~l~~l~~L~~L~l~~~~~~~~--~~~~~l~~L~~L~l~~n~l~~  142 (199)
T d2omxa2          80 LKNLTKLVDILMNNNQ-IAD-IT-PLANLTNLTGLTLFNNQITDI--DPLKNLTNLNRLELSSNTISD  142 (199)
T ss_dssp             GTTCTTCCEEECCSSC-CCC-CG-GGTTCTTCSEEECCSSCCCCC--GGGTTCTTCSEEECCSSCCCC
T ss_pred             ccCCcccccccccccc-ccc-cc-ccccccccccccccccccccc--cccchhhhhHHhhhhhhhhcc
Confidence            6677777888887777 653 33 367777788888877777642  236777888888888877653

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.22  E-value=1.8e-06  Score=65.44  Aligned_cols=87  Identities=16%  Similarity=0.158  Sum_probs=63.9

Q ss_pred             CEEEEEeCccCCCcccCCcCCccCCCCCCCcEEeccCCCCccccCCc-cccCCCCCCEEEcc-CCccccCCCCCcccccc
Q 046467           81 SVIGVSLLWYENDNIIGELGRFKFSCFPNLRSFKIRSNYLLSGSIPS-EITVLSTIRTLELT-SNNLTGKLPNFTVTYYI  158 (183)
Q Consensus        81 ~v~~L~l~~l~~g~l~~~~g~l~~~~l~~L~~L~ls~N~~l~G~iP~-~~~~l~~L~~L~Ls-~N~l~G~iP~~l~~l~~  158 (183)
                      .++.|++.+..-..++..    .|.++++|++|++++|. +...+|. .+..++.++++++. .|++....|..+.++++
T Consensus        30 ~l~~L~Ls~n~i~~l~~~----~f~~l~~L~~L~ls~n~-~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~  104 (242)
T d1xwdc1          30 NAIELRFVLTKLRVIQKG----AFSGFGDLEKIEISQND-VLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPN  104 (242)
T ss_dssp             CCSEEEEESCCCCEECTT----TTTTCTTCCEEEEESCT-TCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTT
T ss_pred             CCCEEECcCCcCCccChh----Hhhccchhhhhhhcccc-ccceeecccccccccccccccccccccccccccccccccc
Confidence            466777764322333321    16788899999999998 8776654 57788999998875 46777777777889999


Q ss_pred             ccEEEcccCCcccc
Q 046467          159 FYKIVLMLSAGVCF  172 (183)
Q Consensus       159 L~~L~L~~n~~~~~  172 (183)
                      |+.+++.+|++...
T Consensus       105 L~~l~l~~~~l~~~  118 (242)
T d1xwdc1         105 LQYLLISNTGIKHL  118 (242)
T ss_dssp             CCEEEEESCCCCSC
T ss_pred             ccccccchhhhccc
Confidence            99999999887643

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.19  E-value=9.2e-07  Score=66.49  Aligned_cols=63  Identities=16%  Similarity=0.171  Sum_probs=38.4

Q ss_pred             CCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCccccccccEEEcccCCccc
Q 046467          104 FSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIFYKIVLMLSAGVC  171 (183)
Q Consensus       104 ~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~~~~  171 (183)
                      +..+++|++|++++|+ +++ +| .+..+++|+.|++++|.+.. + +.+.++++++.++++.|....
T Consensus        86 ~~~l~~L~~L~l~~n~-i~~-l~-~l~~l~~L~~L~l~~~~~~~-~-~~l~~l~~l~~l~~~~n~l~~  148 (210)
T d1h6ta2          86 LANLKNLGWLFLDENK-VKD-LS-SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITD  148 (210)
T ss_dssp             GTTCTTCCEEECCSSC-CCC-GG-GGTTCTTCCEEECTTSCCCC-C-GGGGGCTTCCEEECCSSCCCC
T ss_pred             cccCcccccccccccc-ccc-cc-cccccccccccccccccccc-c-ccccccccccccccccccccc
Confidence            4556666666666666 663 33 35666666666666666642 2 346666666666666666554

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.17  E-value=1.4e-06  Score=65.89  Aligned_cols=58  Identities=16%  Similarity=0.301  Sum_probs=51.2

Q ss_pred             CCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCccccccccEEEccc
Q 046467          104 FSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIFYKIVLML  166 (183)
Q Consensus       104 ~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~  166 (183)
                      +.++++|+.|++++|+ +++ +|+ ++++++|++|++++|++++ +|+ +.++++|+.|+|++
T Consensus       169 l~~l~~L~~L~Ls~n~-l~~-l~~-l~~l~~L~~L~Ls~N~lt~-i~~-l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         169 LANLSKLTTLKADDNK-ISD-ISP-LASLPNLIEVHLKNNQISD-VSP-LANTSNLFIVTLTN  226 (227)
T ss_dssp             GTTCTTCCEEECCSSC-CCC-CGG-GGGCTTCCEEECTTSCCCB-CGG-GTTCTTCCEEEEEE
T ss_pred             hcccccceecccCCCc-cCC-Chh-hcCCCCCCEEECcCCcCCC-Ccc-cccCCCCCEEEeeC
Confidence            7889999999999999 986 443 8899999999999999995 654 89999999999974

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.09  E-value=3.3e-06  Score=62.73  Aligned_cols=74  Identities=18%  Similarity=0.245  Sum_probs=57.6

Q ss_pred             CCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCccccccccEEEcccCCcccccCCccccccC
Q 046467          104 FSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIFYKIVLMLSAGVCFYNAEEVCAVR  182 (183)
Q Consensus       104 ~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~~~~~~~~e~~~~~~  182 (183)
                      +..+++|+.|++++|. +.. + +.+..+++|++|++++|++++ +| .++++++|+.|++++|++..--+.+.+..+|
T Consensus       124 ~~~l~~L~~L~l~~n~-l~~-~-~~l~~~~~L~~L~l~~n~l~~-l~-~l~~l~~L~~L~ls~N~i~~i~~l~~L~~L~  197 (199)
T d2omxa2         124 LKNLTNLNRLELSSNT-ISD-I-SALSGLTSLQQLNFSSNQVTD-LK-PLANLTTLERLDISSNKVSDISVLAKLTNLE  197 (199)
T ss_dssp             GTTCTTCSEEECCSSC-CCC-C-GGGTTCTTCSEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCCCCGGGGGCTTCS
T ss_pred             cchhhhhHHhhhhhhh-hcc-c-ccccccccccccccccccccC-Cc-cccCCCCCCEEECCCCCCCCCccccCCCCCC
Confidence            6778899999999998 873 3 358889999999999999986 44 3889999999999999887532334444443

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.03  E-value=5.5e-06  Score=62.04  Aligned_cols=73  Identities=14%  Similarity=0.183  Sum_probs=47.0

Q ss_pred             CCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCccccccccEEEcccCCcccccCCcccccc
Q 046467          104 FSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIFYKIVLMLSAGVCFYNAEEVCAV  181 (183)
Q Consensus       104 ~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~~~~~~~~e~~~~~  181 (183)
                      +..+++++.++++.|. +++  +..+.++++|+++++++|++++ +++ +.++++|+.|+|++|++...-+.+.+..+
T Consensus       130 l~~l~~l~~l~~~~n~-l~~--~~~~~~l~~L~~l~l~~n~l~~-i~~-l~~l~~L~~L~Ls~N~i~~l~~l~~l~~L  202 (210)
T d1h6ta2         130 LVHLPQLESLYLGNNK-ITD--ITVLSRLTKLDTLSLEDNQISD-IVP-LAGLTKLQNLYLSKNHISDLRALAGLKNL  202 (210)
T ss_dssp             GGGCTTCCEEECCSSC-CCC--CGGGGGCTTCSEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCBCGGGTTCTTC
T ss_pred             cccccccccccccccc-ccc--cccccccccccccccccccccc-ccc-ccCCCCCCEEECCCCCCCCChhhcCCCCC
Confidence            4445556666666666 553  2345667888888888888875 443 77888888888888877643223333333

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=97.92  E-value=1.1e-07  Score=71.47  Aligned_cols=82  Identities=17%  Similarity=0.136  Sum_probs=55.6

Q ss_pred             CCEEEEEeCccCCCcccCCcCCccCCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCccccccc
Q 046467           80 GSVIGVSLLWYENDNIIGELGRFKFSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIF  159 (183)
Q Consensus        80 ~~v~~L~l~~l~~g~l~~~~g~l~~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L  159 (183)
                      ..++.|++.+.   .+. .+..  +..+++|++|++++|. ++ .+|.....+..|++|++++|+++. ++ .+.++++|
T Consensus        48 ~~L~~L~Ls~n---~I~-~i~~--l~~l~~L~~L~Ls~N~-i~-~i~~~~~~~~~L~~L~l~~N~i~~-l~-~~~~l~~L  117 (198)
T d1m9la_          48 KACKHLALSTN---NIE-KISS--LSGMENLRILSLGRNL-IK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNL  117 (198)
T ss_dssp             TTCCEEECSEE---EES-CCCC--HHHHTTCCEEECCEEE-EC-SCSSHHHHHHHCCEEECSEEECCC-HH-HHHHHHHS
T ss_pred             cccceeECccc---CCC-Cccc--ccCCccccChhhcccc-cc-cccccccccccccccccccccccc-cc-cccccccc
Confidence            35666776633   121 1111  5667788888888888 76 466655556678888888888874 43 47788888


Q ss_pred             cEEEcccCCccc
Q 046467          160 YKIVLMLSAGVC  171 (183)
Q Consensus       160 ~~L~L~~n~~~~  171 (183)
                      +.|+|++|++..
T Consensus       118 ~~L~L~~N~i~~  129 (198)
T d1m9la_         118 RVLYMSNNKITN  129 (198)
T ss_dssp             SEEEESEEECCC
T ss_pred             cccccccchhcc
Confidence            888888887764

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.82  E-value=2.8e-05  Score=58.53  Aligned_cols=62  Identities=8%  Similarity=0.055  Sum_probs=51.0

Q ss_pred             CCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCC-CccccccccEEEccc-CCcc
Q 046467          108 PNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPN-FTVTYYIFYKIVLML-SAGV  170 (183)
Q Consensus       108 ~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~-~l~~l~~L~~L~L~~-n~~~  170 (183)
                      +++++|++++|+ ++..-+..|.++++|++|++++|.+...+|. .+.++++++.+.+.. |+..
T Consensus        29 ~~l~~L~Ls~n~-i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~   92 (242)
T d1xwdc1          29 RNAIELRFVLTK-LRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLL   92 (242)
T ss_dssp             SCCSEEEEESCC-CCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCC
T ss_pred             CCCCEEECcCCc-CCccChhHhhccchhhhhhhccccccceeecccccccccccccccccccccc
Confidence            578999999999 9854344689999999999999999887765 577899999998865 4444

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=97.82  E-value=3.8e-05  Score=59.99  Aligned_cols=78  Identities=14%  Similarity=0.092  Sum_probs=52.1

Q ss_pred             CCEEEEEeCccCCCcccCCcCCccCCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCccccccc
Q 046467           80 GSVIGVSLLWYENDNIIGELGRFKFSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIF  159 (183)
Q Consensus        80 ~~v~~L~l~~l~~g~l~~~~g~l~~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L  159 (183)
                      ..++.|++++.+-..+|.        .+.+|+.|++++|+ ++ .++.-   .+.|++|++++|.++ .+|. ++++++|
T Consensus        58 ~~L~~L~Ls~N~l~~lp~--------~~~~L~~L~l~~n~-l~-~l~~l---p~~L~~L~L~~n~l~-~lp~-~~~l~~L  122 (353)
T d1jl5a_          58 PHLESLVASCNSLTELPE--------LPQSLKSLLVDNNN-LK-ALSDL---PPLLEYLGVSNNQLE-KLPE-LQNSSFL  122 (353)
T ss_dssp             TTCSEEECCSSCCSSCCC--------CCTTCCEEECCSSC-CS-CCCSC---CTTCCEEECCSSCCS-SCCC-CTTCTTC
T ss_pred             CCCCEEECCCCCCccccc--------chhhhhhhhhhhcc-cc-hhhhh---ccccccccccccccc-cccc-hhhhccc
Confidence            456677766332223332        23567788888877 66 34421   246889999999987 5775 6788999


Q ss_pred             cEEEcccCCcccc
Q 046467          160 YKIVLMLSAGVCF  172 (183)
Q Consensus       160 ~~L~L~~n~~~~~  172 (183)
                      +.|++.++.+...
T Consensus       123 ~~L~l~~~~~~~~  135 (353)
T d1jl5a_         123 KIIDVDNNSLKKL  135 (353)
T ss_dssp             CEEECCSSCCSCC
T ss_pred             eeecccccccccc
Confidence            9999988887644

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=97.68  E-value=5.1e-05  Score=59.24  Aligned_cols=58  Identities=16%  Similarity=0.213  Sum_probs=48.9

Q ss_pred             CCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCCCCccccccccEEEcccCCccc
Q 046467          105 SCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLPNFTVTYYIFYKIVLMLSAGVC  171 (183)
Q Consensus       105 ~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~L~~n~~~~  171 (183)
                      ..+++|++|++++|+ ++ .+|..   +++|+.|++++|+++ .+|..   +++|+.|+|++|++..
T Consensus       281 ~~~~~L~~L~Ls~N~-l~-~lp~~---~~~L~~L~L~~N~L~-~l~~~---~~~L~~L~L~~N~L~~  338 (353)
T d1jl5a_         281 DLPPSLEELNVSNNK-LI-ELPAL---PPRLERLIASFNHLA-EVPEL---PQNLKQLHVEYNPLRE  338 (353)
T ss_dssp             CCCTTCCEEECCSSC-CS-CCCCC---CTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCSS
T ss_pred             ccCCCCCEEECCCCc-cC-ccccc---cCCCCEEECCCCcCC-ccccc---cCCCCEEECcCCcCCC
Confidence            345789999999999 98 68864   578999999999998 78864   4689999999999874

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=97.67  E-value=3.8e-07  Score=68.46  Aligned_cols=63  Identities=19%  Similarity=0.185  Sum_probs=40.6

Q ss_pred             CCCCcEEeccCCCCccccCCccccCCCCCCEEEccCCccccCCC--CCccccccccEEEcccCCccccc
Q 046467          107 FPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSNNLTGKLP--NFTVTYYIFYKIVLMLSAGVCFY  173 (183)
Q Consensus       107 l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N~l~G~iP--~~l~~l~~L~~L~L~~n~~~~~~  173 (183)
                      +++|+.|++++|. ++. + +.+..+++|++|++++|+++. ++  ..+..+++|+.|+|++|++....
T Consensus        92 ~~~L~~L~l~~N~-i~~-l-~~~~~l~~L~~L~L~~N~i~~-~~~~~~l~~l~~L~~L~L~~N~l~~~~  156 (198)
T d1m9la_          92 ADTLEELWISYNQ-IAS-L-SGIEKLVNLRVLYMSNNKITN-WGEIDKLAALDKLEDLLLAGNPLYNDY  156 (198)
T ss_dssp             HHHCCEEECSEEE-CCC-H-HHHHHHHHSSEEEESEEECCC-HHHHHHHTTTTTCSEEEECSSHHHHHH
T ss_pred             ccccccccccccc-ccc-c-ccccccccccccccccchhcc-ccccccccCCCccceeecCCCccccCc
Confidence            3467777777777 663 3 336667777777777777763 33  34667777777777777665443

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.63  E-value=2.7e-06  Score=61.61  Aligned_cols=66  Identities=17%  Similarity=0.133  Sum_probs=47.7

Q ss_pred             CCCCCCcEEeccCCCCcccc--CCccccCCCCCCEEEccCCccccCCCC-CccccccccEEEcccCCcccc
Q 046467          105 SCFPNLRSFKIRSNYLLSGS--IPSEITVLSTIRTLELTSNNLTGKLPN-FTVTYYIFYKIVLMLSAGVCF  172 (183)
Q Consensus       105 ~~l~~L~~L~ls~N~~l~G~--iP~~~~~l~~L~~L~Ls~N~l~G~iP~-~l~~l~~L~~L~L~~n~~~~~  172 (183)
                      ..++.|++|++++|+ ++..  ++..+..+++|+.|++++|.++. +++ ......+|+.|++.+|++++.
T Consensus        62 ~~~~~L~~L~Ls~N~-i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~-l~~l~~l~~~~L~~L~L~~Npl~~~  130 (162)
T d1koha1          62 ENIPELLSLNLSNNR-LYRLDDMSSIVQKAPNLKILNLSGNELKS-ERELDKIKGLKLEELWLDGNSLSDT  130 (162)
T ss_dssp             HHCTTCCCCCCCSSC-CCCCSGGGTHHHHSTTCCCCCCTTSCCCC-GGGHHHHTTCCCSSCCCTTSTTSSS
T ss_pred             HhCCCCCEeeCCCcc-ccCCchhHHHHhhCCcccccccccCcccc-chhhhhhhccccceeecCCCCcCcC
Confidence            457788899999998 8752  33456778889999999998873 443 222345688888888888754

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.46  E-value=7e-05  Score=58.37  Aligned_cols=63  Identities=13%  Similarity=0.094  Sum_probs=52.8

Q ss_pred             CCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccC-CccccCCCCCccccccccEEEcccC
Q 046467          105 SCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTS-NNLTGKLPNFTVTYYIFYKIVLMLS  167 (183)
Q Consensus       105 ~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~-N~l~G~iP~~l~~l~~L~~L~L~~n  167 (183)
                      .++++|++|+++++..+++.....+.++++|++|++++ +++++.....++++++|+.|++++.
T Consensus       172 ~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         172 RRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             HHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             cccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            45788999999886438888888899999999999998 5788777778899999999998765

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.90  E-value=8.8e-05  Score=57.78  Aligned_cols=63  Identities=16%  Similarity=0.180  Sum_probs=49.2

Q ss_pred             CCCCCCCcEEeccCCCCccccCCccccCCCCCCEEEccCC-ccccC-CCCCccccccccEEEcccC
Q 046467          104 FSCFPNLRSFKIRSNYLLSGSIPSEITVLSTIRTLELTSN-NLTGK-LPNFTVTYYIFYKIVLMLS  167 (183)
Q Consensus       104 ~~~l~~L~~L~ls~N~~l~G~iP~~~~~l~~L~~L~Ls~N-~l~G~-iP~~l~~l~~L~~L~L~~n  167 (183)
                      +.++++|++|+++++. +++..+..++++++|++|+++++ .++.. +..-..++++|+.|++++.
T Consensus        67 ~~~c~~L~~L~L~~~~-l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c  131 (284)
T d2astb2          67 LSQCSKLQNLSLEGLR-LSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWC  131 (284)
T ss_dssp             HTTBCCCSEEECTTCB-CCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCC
T ss_pred             HHhCCCcccccccccC-CCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccccccccc
Confidence            5678899999999998 98888888999999999999884 55421 2222346889999999873

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.81  E-value=6.4e-05  Score=54.01  Aligned_cols=78  Identities=14%  Similarity=0.187  Sum_probs=53.5

Q ss_pred             CCEEEEEeCccCCCcccCCcCCcc--CCCCCCCcEEeccCCCCccccCCc-cccCCCCCCEEEccCCccccCCCCC----
Q 046467           80 GSVIGVSLLWYENDNIIGELGRFK--FSCFPNLRSFKIRSNYLLSGSIPS-EITVLSTIRTLELTSNNLTGKLPNF----  152 (183)
Q Consensus        80 ~~v~~L~l~~l~~g~l~~~~g~l~--~~~l~~L~~L~ls~N~~l~G~iP~-~~~~l~~L~~L~Ls~N~l~G~iP~~----  152 (183)
                      ..++.|++++.   .+. .+..++  +..+++|+.|++++|. ++. +++ .......|+.|++++|.++......    
T Consensus        65 ~~L~~L~Ls~N---~i~-~l~~~~~~~~~l~~L~~L~Ls~N~-i~~-l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~  138 (162)
T d1koha1          65 PELLSLNLSNN---RLY-RLDDMSSIVQKAPNLKILNLSGNE-LKS-ERELDKIKGLKLEELWLDGNSLSDTFRDQSTYI  138 (162)
T ss_dssp             TTCCCCCCCSS---CCC-CCSGGGTHHHHSTTCCCCCCTTSC-CCC-GGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHH
T ss_pred             CCCCEeeCCCc---ccc-CCchhHHHHhhCCcccccccccCc-ccc-chhhhhhhccccceeecCCCCcCcCcccchhHH
Confidence            45666777643   221 111111  4568899999999999 884 443 3334557999999999999776643    


Q ss_pred             ---ccccccccEEE
Q 046467          153 ---TVTYYIFYKIV  163 (183)
Q Consensus       153 ---l~~l~~L~~L~  163 (183)
                         +..+|+|+.||
T Consensus       139 ~~i~~~~P~L~~LD  152 (162)
T d1koha1         139 SAIRERFPKLLRLD  152 (162)
T ss_dssp             HHHHTTSTTCCEET
T ss_pred             HHHHHHCCCCCEEC
Confidence               45789999887

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.74  E-value=0.00013  Score=58.53  Aligned_cols=63  Identities=16%  Similarity=0.085  Sum_probs=36.6

Q ss_pred             CCCCcEEeccCCCCcccc----CCcccc-CCCCCCEEEccCCccccC----CCCCccccccccEEEcccCCcc
Q 046467          107 FPNLRSFKIRSNYLLSGS----IPSEIT-VLSTIRTLELTSNNLTGK----LPNFTVTYYIFYKIVLMLSAGV  170 (183)
Q Consensus       107 l~~L~~L~ls~N~~l~G~----iP~~~~-~l~~L~~L~Ls~N~l~G~----iP~~l~~l~~L~~L~L~~n~~~  170 (183)
                      .++|+.|++++|. ++..    ++..+. ..+.|++|+|++|+++..    ++..+..+++|++|+|+.|++.
T Consensus       339 ~~~L~~L~Ls~N~-i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~  410 (460)
T d1z7xw1         339 NRFLLELQISNNR-LEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG  410 (460)
T ss_dssp             CSSCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCC
T ss_pred             ccchhhhheeeec-ccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCC
Confidence            3456777777776 6542    333332 345577777777776532    3334455567777777777654

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.54  E-value=0.00023  Score=57.07  Aligned_cols=66  Identities=23%  Similarity=0.210  Sum_probs=48.3

Q ss_pred             CCCCCCCcEEeccCCCCcccc----CCcccc-CCCCCCEEEccCCccccC----CCCCccccccccEEEcccCCcc
Q 046467          104 FSCFPNLRSFKIRSNYLLSGS----IPSEIT-VLSTIRTLELTSNNLTGK----LPNFTVTYYIFYKIVLMLSAGV  170 (183)
Q Consensus       104 ~~~l~~L~~L~ls~N~~l~G~----iP~~~~-~l~~L~~L~Ls~N~l~G~----iP~~l~~l~~L~~L~L~~n~~~  170 (183)
                      +...++|+.|++++|. ++..    +...+. ...+|++|++++|+++..    ++..+..+++|+.|+|++|.+.
T Consensus        51 L~~~~~L~~LdLs~N~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~  125 (460)
T d1z7xw1          51 LRVNPALAELNLRSNE-LGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLG  125 (460)
T ss_dssp             HHTCTTCCEEECTTCC-CHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCH
T ss_pred             HhcCCCCCEEECcCCc-CChHHHHHHHHHHhcCCCCCCEEECCCCCccccccccccchhhccccccccccccccch
Confidence            4577889999999998 7531    222222 235799999999988754    4556778899999999998865

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=95.94  E-value=0.00092  Score=52.65  Aligned_cols=15  Identities=7%  Similarity=-0.352  Sum_probs=8.1

Q ss_pred             cccccEEEcccCCcc
Q 046467          156 YYIFYKIVLMLSAGV  170 (183)
Q Consensus       156 l~~L~~L~L~~n~~~  170 (183)
                      +++|+.|+|+.|+++
T Consensus       301 ~~~L~~L~l~~N~~~  315 (344)
T d2ca6a1         301 MPDLLFLELNGNRFS  315 (344)
T ss_dssp             CTTCCEEECTTSBSC
T ss_pred             CCCCCEEECCCCcCC
Confidence            445555555555553

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=95.94  E-value=0.0012  Score=52.03  Aligned_cols=66  Identities=12%  Similarity=0.148  Sum_probs=35.9

Q ss_pred             CCCCCCCcEEeccCCCCcccc----CCccccCCCCCCEEEccCCccccCCCCCcc------ccccccEEEcccCCcc
Q 046467          104 FSCFPNLRSFKIRSNYLLSGS----IPSEITVLSTIRTLELTSNNLTGKLPNFTV------TYYIFYKIVLMLSAGV  170 (183)
Q Consensus       104 ~~~l~~L~~L~ls~N~~l~G~----iP~~~~~l~~L~~L~Ls~N~l~G~iP~~l~------~l~~L~~L~L~~n~~~  170 (183)
                      +...++|+.|++++|. ++..    +...+..++.|++|+|++|.+++.-...++      ..+.|+.|+|+.|++.
T Consensus       211 l~~~~~L~~L~Ls~N~-i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~  286 (344)
T d2ca6a1         211 LAYCQELKVLDLQDNT-FTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIE  286 (344)
T ss_dssp             GGGCTTCCEEECCSSC-CHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCB
T ss_pred             hcchhhhccccccccc-ccccccccccccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCC
Confidence            3455666666666666 5432    334455566666666666666543222221      1245666666666643

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=94.18  E-value=0.0064  Score=43.17  Aligned_cols=64  Identities=19%  Similarity=0.135  Sum_probs=28.7

Q ss_pred             CCCCCCCcEEeccCCCCccccCC----ccccCCCCCCEEEccCCccccCCC----CCccccccccEEEcccCC
Q 046467          104 FSCFPNLRSFKIRSNYLLSGSIP----SEITVLSTIRTLELTSNNLTGKLP----NFTVTYYIFYKIVLMLSA  168 (183)
Q Consensus       104 ~~~l~~L~~L~ls~N~~l~G~iP----~~~~~l~~L~~L~Ls~N~l~G~iP----~~l~~l~~L~~L~L~~n~  168 (183)
                      +...+.|++|++++|. +...-.    ..+...+.|++|+|++|.++..--    ..+..-+.|+.|+|++|.
T Consensus        40 L~~n~~L~~L~Ls~n~-l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~  111 (167)
T d1pgva_          40 ACNSKHIEKFSLANTA-ISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQR  111 (167)
T ss_dssp             HTTCSCCCEEECTTSC-CBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCS
T ss_pred             HhhCCccceeeccccc-cchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCc
Confidence            3344455555555555 442111    123334555555555555543211    123334455555555443

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=93.64  E-value=0.014  Score=41.30  Aligned_cols=65  Identities=9%  Similarity=-0.022  Sum_probs=47.1

Q ss_pred             CCCCCCcEEeccCC-CCcccc----CCccccCCCCCCEEEccCCccccCCCCC----ccccccccEEEcccCCcc
Q 046467          105 SCFPNLRSFKIRSN-YLLSGS----IPSEITVLSTIRTLELTSNNLTGKLPNF----TVTYYIFYKIVLMLSAGV  170 (183)
Q Consensus       105 ~~l~~L~~L~ls~N-~~l~G~----iP~~~~~l~~L~~L~Ls~N~l~G~iP~~----l~~l~~L~~L~L~~n~~~  170 (183)
                      .+.++|+.|+|+++ . ++..    +-..+...+.|++|+|++|.++..-...    +...+.|+.|+|+.|++.
T Consensus        12 ~n~~~L~~L~L~~~~~-i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~   85 (167)
T d1pgva_          12 EDDTDLKEVNINNMKR-VSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT   85 (167)
T ss_dssp             TTCSSCCEEECTTCCS-SCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred             hCCCCCcEEEeCCCCC-CCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcc
Confidence            34578999999874 4 5432    2234667788999999999987433333    445688999999999876

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=85.57  E-value=0.12  Score=35.94  Aligned_cols=83  Identities=16%  Similarity=0.127  Sum_probs=53.2

Q ss_pred             CCEEEEEeCccCCCcccCC-cCCcc--CCCCCCCcEEeccCCCCccccCC----ccccCCCCCCEEEccCCccccCCC--
Q 046467           80 GSVIGVSLLWYENDNIIGE-LGRFK--FSCFPNLRSFKIRSNYLLSGSIP----SEITVLSTIRTLELTSNNLTGKLP--  150 (183)
Q Consensus        80 ~~v~~L~l~~l~~g~l~~~-~g~l~--~~~l~~L~~L~ls~N~~l~G~iP----~~~~~l~~L~~L~Ls~N~l~G~iP--  150 (183)
                      ..++.|++.+.  ..+... +..+-  +...++|+.|++++|. ++..--    ..+...+.++.+++++|.++..--  
T Consensus        17 ~~L~~L~L~~~--~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~-l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~   93 (166)
T d1io0a_          17 PDLEEVNLNNI--MNIPVPTLKACAEALKTNTYVKKFSIVGTR-SNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA   93 (166)
T ss_dssp             TTCCEEECTTC--TTCCHHHHHHHHHHHTTCCSCCEEECTTSC-CCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred             CCCcEEEcCCC--CCCCHHHHHHHHHHHhcCCccCeeeccCCc-ccHHHHHHHHHHHhhcccchhhhhccccccchhHHH
Confidence            46778888643  112111 00110  5577899999999998 765422    234567889999999998864422  


Q ss_pred             --CCccccccccEEEcc
Q 046467          151 --NFTVTYYIFYKIVLM  165 (183)
Q Consensus       151 --~~l~~l~~L~~L~L~  165 (183)
                        ..+...++|+.++|+
T Consensus        94 l~~~l~~~~~L~~l~L~  110 (166)
T d1io0a_          94 LVEALQSNTSLIELRID  110 (166)
T ss_dssp             HHHGGGGCSSCCEEECC
T ss_pred             HHHHHHhCccccEEeec
Confidence              446677889887764

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=85.23  E-value=0.12  Score=35.86  Aligned_cols=89  Identities=17%  Similarity=0.240  Sum_probs=55.4

Q ss_pred             CCEEEEEeCccCCCccc-CCcCCccCCCCCCCcEEeccCCCCcccc----CCccccCCCCCCEEEc--cCCcccc----C
Q 046467           80 GSVIGVSLLWYENDNII-GELGRFKFSCFPNLRSFKIRSNYLLSGS----IPSEITVLSTIRTLEL--TSNNLTG----K  148 (183)
Q Consensus        80 ~~v~~L~l~~l~~g~l~-~~~g~l~~~~l~~L~~L~ls~N~~l~G~----iP~~~~~l~~L~~L~L--s~N~l~G----~  148 (183)
                      ..++.|++.+..-+.-. ..++.. +...++++.+++++|. ++..    +-..+...+.|+.++|  +.|.+..    .
T Consensus        46 ~~L~~L~Ls~n~l~~~~~~~L~~~-l~~~~~l~~l~l~~~~-~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~  123 (166)
T d1io0a_          46 TYVKKFSIVGTRSNDPVAFALAEM-LKVNNTLKSLNVESNF-ISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEME  123 (166)
T ss_dssp             CSCCEEECTTSCCCHHHHHHHHHH-HHHCSSCCEEECCSSC-CCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHH
T ss_pred             CccCeeeccCCcccHHHHHHHHHH-Hhhcccchhhhhcccc-ccchhHHHHHHHHHhCccccEEeeccCCCcCcHHHHHH
Confidence            46888888754211100 001111 4556789999999998 7543    2345677888998666  4566643    2


Q ss_pred             CCCCccccccccEEEcccCCcc
Q 046467          149 LPNFTVTYYIFYKIVLMLSAGV  170 (183)
Q Consensus       149 iP~~l~~l~~L~~L~L~~n~~~  170 (183)
                      +-..+...++|+.|+++.++..
T Consensus       124 La~~L~~n~~L~~L~l~~~~~~  145 (166)
T d1io0a_         124 IANMLEKNTTLLKFGYHFTQQG  145 (166)
T ss_dssp             HHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHHHhCCCcCEEeCcCCCCc
Confidence            3344557889999999776543