Citrus Sinensis ID: 046471

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------37
MGITFRLFSERLRRVLASQEVTLPDAAKEPIQNLHAEVEIVTPWLRDYEYDMSWLLLQKIGEDEVDNPDLGRKSIALPMNLKRINDIKQRMQQLQYIDSGIIDDFKNIEDEVGYFPASLSSKNSGMVGLEDRMEKLLDILKEGPPQLSVVAFAAEAYSNSDVKHYFNCHAWVPEPYNYDADDDQILDMIMKFLMPSSRLSIIKDKNYEMKKKIQQYLMIKRYLIVVDDVWRIEVWDVIREIVPDNQNGCGVLITLIEIDIVISFHISLKENIEEALDEPLGLQVVAYCMLPFYLKLCCLYLSVFPVHFEISTKQLYQSWIAEGFITDNNEATAEKYLEQLINGGFVILIEEAKGLVFIYKHLTMHEQEF
cHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHcccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccEEccccHHHHHHHHHccccccHHHHHHHHHcccccccccccEEEEEEccccccccHHHHHHHHHHHHccccccccccccHHHHHHHHHHHccccEEEEEEcccccHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHcccHHHHHHccccHHHHHHHHHHccccccccccccccccccccHHcHHHHHHHHHHHcccccccHHHHHHHHHHHHcccccEEEEEEccEEEEEEcEEEccccc
cccEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccHHHEEccccHHHHHHHHHHHccccccHHHHHHHHHcccHHHHcccEEEEEEEcccccHHHHHHHHHHHHHHccccHHHHHHccHHHHHHHHHHHHHcccEEEEEEccccHHHHHHHHHHccccccccEEEEEEccHHHHHHccccccccccccccHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHcccccHcHHHHHHHHHHHHHHccHEEEHHHcccEEEEEccccccHHcc
MGITFRLFSERLRRVLASQevtlpdaakepiqNLHAEVEIVTPWLRDYEYDMSWLLLQKigedevdnpdlgrksialpmnLKRINDIKQRMQQLQYIDsgiiddfkniedevgyfpaslssknsgmvgLEDRMEKLLDILKEGPPQLSVVAFAAEaysnsdvkhyfnchawvpepynydadddQILDMIMKFLMPSSRLSIIKDKNYEMKKKIQQYLMIKRYLIVVDDVWRIEVWDVIREIvpdnqngcgVLITLIEIDIVISFHISLKENIEEaldeplglQVVAYCMLPFYLKLCCLYLSVFPVHFEISTKQLYQSWIAegfitdnneATAEKYLEQLINGGFVILIEEAKGLVFIYKHLTMHEQEF
mgitfrlfSERLRRVLAsqevtlpdaakepiqnlhaeVEIVTPWLRDYEYDMSWLLLQKIGEDEVDNPDLGRKSIALPMNLKRINDIKQRMQQLQYIDSGIIDDFKNIEDEVGYFpaslssknsgmVGLEDRMEKLLDILKEGPPQLSVVAFAAEAYSNSDVKHYFNCHAWVPEPYNYDADDDQILDMIMKFLMPSSRLSIIKDKNYEMKKKIQQYLMIKRYLIVVDDVWRIEVWDVIREivpdnqngCGVLITLIEIDIVISFHISLKENIEEALDEPLGLQVVAYCMLPFYLKLCCLYLSVFPVHFEISTKQLYQSWIAEGFITDNNEATAEKYLEQLINGGFVILIEEAKGLVFIYKHLTMHEQEF
MGITFRLFSERLRRVLASQEVTLPDAAKEPIQNLHAEVEIVTPWLRDYEYDMSWLLLQKIGEDEVDNPDLGRKSIALPMNLKRINDIKQRMQQLQYIDSGIIDDFKNIEDEVGYFPASLSSKNSGMVGLEDRMEKLLDILKEGPPQLSVVAFAAEAYSNSDVKHYFNCHAWVPEPYNYDADDDQILDMIMKFLMPSSRLSIIKDKNYEMKKKIQQYLMIKRYLIVVDDVWRIEVWDVIREIVPDNQNGCGVLITLIEIDIVISFHISLKENIEEALDEPLGLQVVAYCMLPFYLKLCCLYLSVFPVHFEISTKQLYQSWIAEGFITDNNEATAEKYLEQLINGGFVILIEEAKGLVFIYKHLTMHEQEF
***TFRLFSERLRRVLASQEVTLPDAAKEPIQNLHAEVEIVTPWLRDYEYDMSWLLLQKIGEDEVDNPDLGRKSIALPMNLKRINDIKQRMQQLQYIDSGIIDDFKNIEDEVGYFPAS**********L**RMEKLLDILKEGPPQLSVVAFAAEAYSNSDVKHYFNCHAWVPEPYNYDADDDQILDMIMKFLMPSSRLSIIKDKNYEMKKKIQQYLMIKRYLIVVDDVWRIEVWDVIREIVPDNQNGCGVLITLIEIDIVISFHISLKENIEEALDEPLGLQVVAYCMLPFYLKLCCLYLSVFPVHFEISTKQLYQSWIAEGFITDNNEATAEKYLEQLINGGFVILIEEAKGLVFIYKHLT******
***TFRLFSERLRRVLASQEVTLPDAAKEPIQNLHAEVEIVTPWLRDYEYDMSWLLLQKIGED**********SIALPMNLKRINDIKQRMQ**************************LSSKNSGMVGLEDRMEKLLDILKEGPPQLSVVAFAAEAYSNSDVKHYFNCHAWVPEPYNYDADDDQILDMIMKFLMPSSRLSIIKDKNYEMKKKIQQYLMIKRYLIVVDDVWRIEVWDVIREIVPDNQNGCGVLITLIEIDIVISFHISLKENIEEALDEPLGLQVVAYCMLPFYLKLCCLYLSVFPVHFEISTKQLYQSWIAEGFITDNNEATAEKYLEQLINGGFVILIEEAKGLVFIYKHLTMHEQEF
MGITFRLFSERLRRVLASQEVTLPDAAKEPIQNLHAEVEIVTPWLRDYEYDMSWLLLQKIGEDEVDNPDLGRKSIALPMNLKRINDIKQRMQQLQYIDSGIIDDFKNIEDEVGYFPASLSSKNSGMVGLEDRMEKLLDILKEGPPQLSVVAFAAEAYSNSDVKHYFNCHAWVPEPYNYDADDDQILDMIMKFLMPSSRLSIIKDKNYEMKKKIQQYLMIKRYLIVVDDVWRIEVWDVIREIVPDNQNGCGVLITLIEIDIVISFHISLKENIEEALDEPLGLQVVAYCMLPFYLKLCCLYLSVFPVHFEISTKQLYQSWIAEGFITDNNEATAEKYLEQLINGGFVILIEEAKGLVFIYKHLTMHEQEF
MGITFRLFSERLRRVLASQEVTLPDAAKEPIQNLHAEVEIVTPWLRDYEYDMSWLLLQKIGEDEVDNPDLGRKSIALPMNLKRINDIKQRMQQLQYIDS******************SLSSKNSGMVGLEDRMEKLLDILKEGPPQLSVVAFAAEAYSNSDVKHYFNCHAWVPEPYNYDADDDQILDMIMKFLMPSSRLSIIKDKNYEMKKKIQQYLMIKRYLIVVDDVWRIEVWDVIREIVPDNQNGCGVLITLIEIDIVISFHISLKENIEEALDEPLGLQVVAYCMLPFYLKLCCLYLSVFPVHFEISTKQLYQSWIAEGFITDNNEATAEKYLEQLINGGFVILIEEAKGLVFIYKHLTM*****
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MGITFRLFSERLRRVLASQEVTLPDAAKEPIQNLHAEVEIVTPWLRDYEYDMSWLLLQKIGEDEVDNPDLGRKSIALPMNLKRINDIKQRMQQLQYIDSGIIDDFKNIEDEVGYFPASLSSKNSGMVGLEDRMEKLLDILKEGPPQLSVVAFAAEAYSNSDVKHYFNCHAWVPEPYNYDADDDQILDMIMKFLMPSSRLSIIKDKNYEMKKKIQQYLMIKRYLIVVDDVWRIEVWDVIREIVPDNQNGCGVLITLIEIDIVISFHISLKENIEEALDEPLGLQVVAYCMLPFYLKLCCLYLSVFPVHFEISTKQLYQSWIAEGFITDNNEATAEKYLEQLINGGFVILIEEAKGLVFIYKHLTMHEQEF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query369 2.2.26 [Sep-21-2011]
Q6L3Y2 1252 Putative late blight resi N/A no 0.392 0.115 0.292 2e-10
Q9FJB5 901 Disease resistance RPP8-l yes no 0.449 0.184 0.287 5e-10
Q9XIF0 906 Putative disease resistan no no 0.485 0.197 0.301 1e-09
Q9M667 835 Disease resistance protei no no 0.344 0.152 0.333 2e-09
Q38834 852 Disease resistance RPP13- no no 0.349 0.151 0.302 4e-09
Q8W4J9 908 Disease resistance protei no no 0.449 0.182 0.268 1e-08
P0C8S1 906 Probable disease resistan no no 0.720 0.293 0.233 1e-08
Q8W474 907 Probable disease resistan no no 0.447 0.181 0.291 7e-08
Q39214 926 Disease resistance protei no no 0.420 0.167 0.280 1e-07
Q6L406 1326 Putative late blight resi N/A no 0.712 0.198 0.245 2e-07
>sp|Q6L3Y2|R1B11_SOLDE Putative late blight resistance protein homolog R1B-11 OS=Solanum demissum GN=R1B-11 PE=5 SV=1 Back     alignment and function desciption
 Score = 67.4 bits (163), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 48/164 (29%), Positives = 75/164 (45%), Gaps = 19/164 (11%)

Query: 208 EMKKKIQQYLMIKRYLIVVDDVWRIEVWDVIREIVPDNQNGCGV------LITLIEIDIV 261
           E+   +++ L+ +RYLI+VDDVW   VWD +R   PD  N   +      ++   +  + 
Sbjct: 693 ELSDMLRKTLLPRRYLILVDDVWENSVWDDLRGCFPDANNRSRIFGPSHPMLGPPKSKLP 752

Query: 262 ISFHISLKENIEEALDEPLGLQV---------VAYCMLPFYLKLCCLYLSVFPVHFEIST 312
               +S    + E +   LG  +          +Y +LP +LK C LY   F     I  
Sbjct: 753 THQMLSTGREVGEQVANNLGTHIHNDSRAIVDQSYHVLPCHLKSCFLYFGAFLEDRVIDI 812

Query: 313 KQLYQSWIAEGFITDNN----EATAEKYLEQLINGGFVILIEEA 352
            +L + WI+E FI  +     E  AE YLE LI    V++ + A
Sbjct: 813 SRLIRLWISEAFIKSSEGRSLEDIAEGYLENLIGRNLVMVTQRA 856
Confers resistance to late blight (Phytophthora infestans) races carrying the avirulence gene Avr1. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth.
Solanum demissum (taxid: 50514)
>sp|Q9FJB5|RP8L3_ARATH Disease resistance RPP8-like protein 3 OS=Arabidopsis thaliana GN=RPP8L3 PE=2 SV=1 Back     alignment and function description
>sp|Q9XIF0|DRL13_ARATH Putative disease resistance protein At1g59780 OS=Arabidopsis thaliana GN=At1g59780 PE=2 SV=1 Back     alignment and function description
>sp|Q9M667|RPP13_ARATH Disease resistance protein RPP13 OS=Arabidopsis thaliana GN=RPP13 PE=2 SV=2 Back     alignment and function description
>sp|Q38834|R13L4_ARATH Disease resistance RPP13-like protein 4 OS=Arabidopsis thaliana GN=RPP13L4 PE=2 SV=2 Back     alignment and function description
>sp|Q8W4J9|RPP8_ARATH Disease resistance protein RPP8 OS=Arabidopsis thaliana GN=RPP8 PE=1 SV=2 Back     alignment and function description
>sp|P0C8S1|RP8L2_ARATH Probable disease resistance RPP8-like protein 2 OS=Arabidopsis thaliana GN=RPP8L2 PE=1 SV=1 Back     alignment and function description
>sp|Q8W474|DRL7_ARATH Probable disease resistance protein At1g58390 OS=Arabidopsis thaliana GN=At1g58390 PE=2 SV=4 Back     alignment and function description
>sp|Q39214|RPM1_ARATH Disease resistance protein RPM1 OS=Arabidopsis thaliana GN=RPM1 PE=1 SV=1 Back     alignment and function description
>sp|Q6L406|R1B19_SOLDE Putative late blight resistance protein homolog R1B-19 OS=Solanum demissum GN=R1B-19 PE=5 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query369
147839260 816 hypothetical protein VITISV_033801 [Viti 0.520 0.235 0.267 2e-16
297804602 527 predicted protein [Arabidopsis lyrata su 0.704 0.493 0.267 2e-14
359480122 934 PREDICTED: disease resistance protein RP 0.620 0.245 0.253 1e-13
359491404 922 PREDICTED: probable disease resistance R 0.547 0.219 0.242 3e-13
307950364 645 RGC1B [Triticum aestivum] 0.550 0.314 0.301 4e-13
225455685 841 PREDICTED: probable disease resistance p 0.582 0.255 0.253 9e-13
297744667 604 unnamed protein product [Vitis vinifera] 0.495 0.302 0.274 9e-13
218185047 838 hypothetical protein OsI_34712 [Oryza sa 0.411 0.181 0.298 1e-12
90110669 628 disease resistance protein [Triticum aes 0.474 0.278 0.302 1e-12
147766035 902 hypothetical protein VITISV_038742 [Viti 0.555 0.227 0.260 3e-12
>gi|147839260|emb|CAN67961.1| hypothetical protein VITISV_033801 [Vitis vinifera] Back     alignment and taxonomy information
 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 68/254 (26%), Positives = 112/254 (44%), Gaps = 62/254 (24%)

Query: 143 GPPQLSVVAFAAEAYSNSDVKHYFNCHAWVPEPYNYDADDDQILDMIMKFLMPSSRLSII 202
           G   L     A + Y+++DV   F+CHAW+     Y + +  I ++++   +    LS  
Sbjct: 184 GMGGLGKTTLAKKVYNDNDVXQCFDCHAWI-----YVSQEYTIRELLLGVAVCVRXLSEE 238

Query: 203 KDK---NYEMKKKIQQYLMIKRYLIVVDDVWRIEVWDVIREIVPDNQNG----------- 248
           +       E+  +++ YL  K+YLIV+DD+WR E WD +    PD++             
Sbjct: 239 ERSXMNESELGNRLRDYLTTKKYLIVMDDMWRNEAWDRLGLYFPDSEESWELFLKKIFLA 298

Query: 249 ---------------------CGVLITLIEIDIVISFHISLKE---------------NI 272
                                CG L   I   +V+   +S KE               ++
Sbjct: 299 GSANAVCPRELEELGKKIVANCGGLPLAI---VVLGGLLSRKEKTPLSWQKVLDSLTWHL 355

Query: 273 EEALDEPLGLQVVAYCMLPFYLKLCCLYLSVFPVHFEISTKQLYQSWIAEGFITDNNEA- 331
            +  D  LG+  ++Y  +P+YLK C LY  +FP   EI T +L + W+AEGFI    E  
Sbjct: 356 NQGPDSCLGVLALSYNDMPYYLKSCFLYCGLFPEDSEIRTDKLIRXWVAEGFIQRRGEEI 415

Query: 332 ---TAEKYLEQLIN 342
               AE +L++L++
Sbjct: 416 AEDVAEDHLQELVH 429

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|297804602|ref|XP_002870185.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297316021|gb|EFH46444.1| predicted protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|359480122|ref|XP_002265617.2| PREDICTED: disease resistance protein RPM1-like [Vitis vinifera] gi|147771833|emb|CAN60254.1| hypothetical protein VITISV_025805 [Vitis vinifera] Back     alignment and taxonomy information
>gi|359491404|ref|XP_002274414.2| PREDICTED: probable disease resistance RPP8-like protein 2-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|307950364|gb|ADN96939.1| RGC1B [Triticum aestivum] Back     alignment and taxonomy information
>gi|225455685|ref|XP_002265241.1| PREDICTED: probable disease resistance protein RXW24L [Vitis vinifera] Back     alignment and taxonomy information
>gi|297744667|emb|CBI37929.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|218185047|gb|EEC67474.1| hypothetical protein OsI_34712 [Oryza sativa Indica Group] Back     alignment and taxonomy information
>gi|90110669|gb|ABA54554.2| disease resistance protein [Triticum aestivum] Back     alignment and taxonomy information
>gi|147766035|emb|CAN70214.1| hypothetical protein VITISV_038742 [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query369
TAIR|locus:2169523 901 AT5G35450 [Arabidopsis thalian 0.449 0.184 0.287 5e-16
TAIR|locus:2075170 835 RPP13 "RECOGNITION OF PERONOSP 0.344 0.152 0.333 1.5e-15
TAIR|locus:2176486 908 RPP8 "RECOGNITION OF PERONOSPO 0.449 0.182 0.268 3.8e-15
TAIR|locus:2025916 906 AT1G59780 "AT1G59780" [Arabido 0.485 0.197 0.301 1.9e-14
TAIR|locus:2078012 852 ZAR1 "HOPZ-ACTIVATED RESISTANC 0.330 0.143 0.314 4.7e-14
TAIR|locus:504956483 847 AT3G46730 [Arabidopsis thalian 0.371 0.161 0.304 6e-14
TAIR|locus:2102857 847 AT3G46710 [Arabidopsis thalian 0.181 0.079 0.394 9.3e-14
TAIR|locus:2077572 926 RPM1 "RESISTANCE TO P. SYRINGA 0.460 0.183 0.284 9.7e-14
TAIR|locus:2037639 907 AT1G58390 "AT1G58390" [Arabido 0.455 0.185 0.284 1.2e-13
TAIR|locus:2197409 727 LOV1 "LOCUS ORCHESTRATING VICT 0.268 0.136 0.333 4.8e-13
TAIR|locus:2169523 AT5G35450 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 161 (61.7 bits), Expect = 5.0e-16, Sum P(2) = 5.0e-16
 Identities = 54/188 (28%), Positives = 91/188 (48%)

Query:    82 KRINDIKQRMQQL----QYIDSGIIDDFKNIEDEVGY-FPASLSSKNSGMVGLEDRMEKL 136
             KRI+ +   MQ L    Q ID G     ++I+ E+   FP   +S  S +VG+E  +E+L
Sbjct:   117 KRISKVIGEMQSLGIQQQIIDGGRSLSLQDIQREIRQTFP---NSSESDLVGVEQSVEEL 173

Query:   137 LDILKE----------GPPQLSVVAFAAEAYSNSDVKHYFNCHAWVPEPYNYDADDDQIL 186
             +  + E          G   +     A + + +  V+ +F+  AWV     +      + 
Sbjct:   174 VGPMVEIDNIQVVSISGMGGIGKTTLARQIFHHDLVRRHFDGFAWVCVSQQFT--QKHVW 231

Query:   187 DMIMKFLMPSSRLSIIKDKNYEMKKKIQQYLMIKRYLIVVDDVWRIEVWDVIREIVPDNQ 246
               I++ L P     I++   Y ++ K+ Q L   RYL+V+DDVW+ E WD I+E+ P  +
Sbjct:   232 QRILQELRPHDG-EILQMDEYTIQGKLFQLLETGRYLVVLDDVWKEEDWDRIKEVFP-RK 289

Query:   247 NGCGVLIT 254
              G  +L+T
Sbjct:   290 RGWKMLLT 297
GO:0006952 "defense response" evidence=IEA;ISS
GO:0043531 "ADP binding" evidence=IEA
GO:0005886 "plasma membrane" evidence=IDA
TAIR|locus:2075170 RPP13 "RECOGNITION OF PERONOSPORA PARASITICA 13" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2176486 RPP8 "RECOGNITION OF PERONOSPORA PARASITICA 8" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2025916 AT1G59780 "AT1G59780" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2078012 ZAR1 "HOPZ-ACTIVATED RESISTANCE 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:504956483 AT3G46730 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2102857 AT3G46710 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2077572 RPM1 "RESISTANCE TO P. SYRINGAE PV MACULICOLA 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2037639 AT1G58390 "AT1G58390" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2197409 LOV1 "LOCUS ORCHESTRATING VICTORIN EFFECTS1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query369
pfam00931285 pfam00931, NB-ARC, NB-ARC domain 4e-16
>gnl|CDD|216202 pfam00931, NB-ARC, NB-ARC domain Back     alignment and domain information 
 Score = 77.4 bits (191), Expect = 4e-16
 Identities = 68/289 (23%), Positives = 104/289 (35%), Gaps = 93/289 (32%)

Query: 130 EDRMEKLLDILKEGPPQLSVVAF-----------AAEAYSNSDVKHYFNCHAWVPEPYNY 178
           ED +E L++ L E    L VV             A + Y++  V  +F+  AWV     Y
Sbjct: 2   EDMIEALIEKLLEMSDNLGVVGIVGMGGVGKTTLAKQIYNDDSVGGHFDSVAWVVVSKTY 61

Query: 179 DADDDQILDMIMKFLMPSSRLSIIKDKNY-EMKKKIQQYLMIKRYLIVVDDVWRIEVWDV 237
                Q  D++ +  +  S      +KN  E+  KI++ L+ KR+L+V+DDVW    WD 
Sbjct: 62  TEFRLQ-KDILQELGLDDSDWV---EKNESELAVKIKEALLRKRFLLVLDDVWEKNDWDK 117

Query: 238 IREIVPDNQNGCGVLITLIEIDIVIS-------FHISLKENIEEALD------------- 277
           I    PD +NG  V++T     +            +   E  EE+ +             
Sbjct: 118 IGVPFPDGENGSRVIVTTRSESVAGRMGGTSKPHEVESLE-PEESWELFSNKVFEKELPP 176

Query: 278 ----EPLGLQVVAYCM-LPFYLK-----------------------------------LC 297
               E +  ++V  C  LP  LK                                   L 
Sbjct: 177 CPELEEVAKEIVEKCKGLPLALKVLGGLLAFKSTVQEWEHVLEQLNNELAGRDGLNEVLS 236

Query: 298 CLYLSV----------------FPVHFEISTKQLYQSWIAEGFITDNNE 330
            L LS                 FP  + I  +QL + WIAEGF+  ++ 
Sbjct: 237 ILSLSYDNLPMHLKRCFLYLALFPEDYNIRKEQLIKLWIAEGFVIPSDI 285

Length = 285

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 369
KOG4658 889 consensus Apoptotic ATPase [Signal transduction me 100.0
PF00931287 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is 99.96
PLN03210 1153 Resistant to P. syringae 6; Provisional 99.87
PRK00411 394 cdc6 cell division control protein 6; Reviewed 96.61
TIGR02928365 orc1/cdc6 family replication initiation protein. M 95.67
cd01128249 rho_factor Transcription termination factor rho is 94.94
PRK05564313 DNA polymerase III subunit delta'; Validated 94.85
PRK09376416 rho transcription termination factor Rho; Provisio 94.25
PF05729166 NACHT: NACHT domain 93.49
COG2909 894 MalT ATP-dependent transcriptional regulator [Tran 93.37
TIGR03015269 pepcterm_ATPase putative secretion ATPase, PEP-CTE 92.64
cd00009151 AAA The AAA+ (ATPases Associated with a wide varie 92.61
TIGR00767415 rho transcription termination factor Rho. Members 91.29
PRK04841 903 transcriptional regulator MalT; Provisional 88.68
KOG2543 438 consensus Origin recognition complex, subunit 5 [R 88.31
PF01637234 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 87.14
PTZ00202550 tuzin; Provisional 85.39
PF13173128 AAA_14: AAA domain 85.31
PF13401131 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S 84.87
COG1474366 CDC6 Cdc6-related protein, AAA superfamily ATPase 84.55
PF04665241 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 82.48
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] Back     alignment and domain information 
Probab=100.00  E-value=2.6e-49  Score=406.39  Aligned_cols=354  Identities=24%  Similarity=0.339  Sum_probs=265.2

Q ss_pred             HHHHHHHHHHHHhhHhhhhhhccCcccCchHHHHHHHHHHHhccccchhhhhhhhcccCCCC-CCcc------cccc---
Q 046471            6 RLFSERLRRVLASQEVTLPDAAKEPIQNLHAEVEIVTPWLRDYEYDMSWLLLQKIGEDEVDN-PDLG------RKSI---   75 (369)
Q Consensus         6 ~~~l~~L~~~L~~i~~~L~~a~~~~~~~~~~~~~~w~~~Lrdlayd~eD~ld~~~~~~~~~~-~~~~------~~~~---   75 (369)
                      +..+..|+++|..++.++.+++.++-+  ......|...+++++|++||.++.+........ .+..      .+..   
T Consensus        27 ~~~i~~Lk~~L~~l~~~l~d~~a~~~~--~~~~~~~~e~~~~~~~~~e~~~~~~~v~~~~~~~~~~l~~~~~~~~~~c~~  104 (889)
T KOG4658|consen   27 DNYILELKENLKALQSALEDLDAKRDD--LERRVNWEEDVGDLVYLAEDIIWLFLVEEIERKANDLLSTRSVERQRLCLC  104 (889)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcch--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhHHHHHHHhhh
Confidence            446889999999999999999998633  356688899999999999999887665432210 0000      0001   


Q ss_pred             -cCccch-------hhHHHHHHHHHHhhhhccCcccCCccccccccCCCCCcCCCCCccccchHHHHHHHHHHhcCCC-C
Q 046471           76 -ALPMNL-------KRINDIKQRMQQLQYIDSGIIDDFKNIEDEVGYFPASLSSKNSGMVGLEDRMEKLLDILKEGPP-Q  146 (369)
Q Consensus        76 -~~~~~~-------~~i~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vGr~~~~~~l~~~L~~~~~-~  146 (369)
                       .+..+.       +++-++...++.+...  +..............+++.+.....+ ||.+..++++.+.|.+++. -
T Consensus       105 ~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~--~~~~~~~~~~~~~~~~e~~~~~~~~~-VG~e~~~~kl~~~L~~d~~~i  181 (889)
T KOG4658|consen  105 GFCSKNVSDSYKYGKRVSKVLREVESLGSK--GVFEVVGESLDPREKVETRPIQSESD-VGLETMLEKLWNRLMEDDVGI  181 (889)
T ss_pred             hhHhHhhhhhHhHHHHHHHHHHHHHHhccc--cceecccccccchhhcccCCCCcccc-ccHHHHHHHHHHHhccCCCCE
Confidence             111122       3344444444443211  10000010011112234445455555 9999999999999998775 3


Q ss_pred             cEEee--------hHHHHhcCcC-ccccccceEEEecCCCCCcChHHHHHHHHHHhCcCCccccccccHHHHHHHHHHhc
Q 046471          147 LSVVA--------FAAEAYSNSD-VKHYFNCHAWVPEPYNYDADDDQILDMIMKFLMPSSRLSIIKDKNYEMKKKIQQYL  217 (369)
Q Consensus       147 ~~vi~--------LA~~vy~~~~-v~~~F~~~~wv~vs~~~~~~~~~il~~il~~l~~~~~~~~~~~~~~~~~~~l~~~L  217 (369)
                      +++.|        ||+++||+.. ++.+|+..+||+||+.|+...  ++++|+..++...... ...+.+.++..|.+.|
T Consensus       182 v~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~--iq~~Il~~l~~~~~~~-~~~~~~~~~~~i~~~L  258 (889)
T KOG4658|consen  182 VGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRK--IQQTILERLGLLDEEW-EDKEEDELASKLLNLL  258 (889)
T ss_pred             EEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHh--HHHHHHHHhccCCccc-chhhHHHHHHHHHHHh
Confidence            44444        9999999988 999999999999999999999  9999999998864432 1124578999999999


Q ss_pred             CCceEEEEEeCCCCchhHHHhhhhcCCCCCCceEEEEecchhhhhh-cc---------c---------------------
Q 046471          218 MIKRYLIVVDDVWRIEVWDVIREIVPDNQNGCGVLITLIEIDIVIS-FH---------I---------------------  266 (369)
Q Consensus       218 ~~kr~LlVLDdvw~~~~w~~l~~~l~~~~~gs~IivTTr~~~va~~-~~---------L---------------------  266 (369)
                      ++|||||||||||+..+|+.++.++|...+||+|++|||++.||.. |.         |                     
T Consensus       259 ~~krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~v~~L~~~eaW~LF~~~v~~~~~~~~  338 (889)
T KOG4658|consen  259 EGKRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPIEVECLTPEEAWDLFQKKVGPNTLGSH  338 (889)
T ss_pred             ccCceEEEEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCccccccccCccccHHHHHHhhcccccccc
Confidence            9999999999999999999999999999899999999999999998 41         1                     


Q ss_pred             ----------------------------ccc----------ccccccccCCc--------chhHhhhcCCchhhHHHHhh
Q 046471          267 ----------------------------SLK----------ENIEEALDEPL--------GLQVVAYCMLPFYLKLCCLY  300 (369)
Q Consensus       267 ----------------------------a~k----------~~~~~~l~~~~--------~il~~sy~~L~~~lk~cfly  300 (369)
                                                  |.|          +.+.+.+..+.        ++|++||++||+++|.||+|
T Consensus       339 ~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~~i~~iLklSyd~L~~~lK~CFLy  418 (889)
T KOG4658|consen  339 PDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGMEESILPILKLSYDNLPEELKSCFLY  418 (889)
T ss_pred             ccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchhhhhHHhhhccHhhhhHHHHHHHHh
Confidence                                        223          22222211111        45999999999999999999


Q ss_pred             hhcCCCCceechHHHHHHHHHcCCCCCCc-----HHHHHHHHHHHHhCCCceeeeccCCeEEEEe-cCcccccC
Q 046471          301 LSVFPVHFEISTKQLYQSWIAEGFITDNN-----EATAEKYLEQLINGGFVILIEEAKGLVFIYK-HLTMHEQE  368 (369)
Q Consensus       301 ~s~fP~~~~i~~~~Li~~W~aeg~i~~~~-----e~~~~~~~~~L~~r~ll~~~~~~~g~~~~~~-h~~~hdl~  368 (369)
                      ||+||+||.|+++.||.+|+||||+.+..     +++|+.|+.+|+++||++..... |+..+|+ ||+|+|.|
T Consensus       419 calFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~-~~~~~~kmHDvvRe~a  491 (889)
T KOG4658|consen  419 CALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDE-GRKETVKMHDVVREMA  491 (889)
T ss_pred             hccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcccc-cceeEEEeeHHHHHHH
Confidence            99999999999999999999999998843     89999999999999999987654 5556665 99999876

>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals [] Back     alignment and domain information
>PLN03210 Resistant to P Back     alignment and domain information
>PRK00411 cdc6 cell division control protein 6; Reviewed Back     alignment and domain information
>TIGR02928 orc1/cdc6 family replication initiation protein Back     alignment and domain information
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase Back     alignment and domain information
>PRK05564 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PRK09376 rho transcription termination factor Rho; Provisional Back     alignment and domain information
>PF05729 NACHT: NACHT domain Back     alignment and domain information
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription] Back     alignment and domain information
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily Back     alignment and domain information
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold Back     alignment and domain information
>TIGR00767 rho transcription termination factor Rho Back     alignment and domain information
>PRK04841 transcriptional regulator MalT; Provisional Back     alignment and domain information
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair] Back     alignment and domain information
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP Back     alignment and domain information
>PTZ00202 tuzin; Provisional Back     alignment and domain information
>PF13173 AAA_14: AAA domain Back     alignment and domain information
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B Back     alignment and domain information
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query369
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-20
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-04
1z6t_A 591 APAF-1, apoptotic protease activating factor 1; ca 9e-16
1z6t_A 591 APAF-1, apoptotic protease activating factor 1; ca 5e-09
2a5y_B 549 CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis 5e-11
2a5y_B549 CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis 6e-08
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 92.6 bits (229), Expect = 2e-20
 Identities = 57/398 (14%), Positives = 118/398 (29%), Gaps = 103/398 (25%)

Query: 9   SERLRRVLASQEVTLPDAAKEPIQNLHAEVEIVTPWLRDYEYDMSWLLLQKIGE------ 62
            +  + +L+ +E+         I +  A               + W LL K  E      
Sbjct: 39  QDMPKSILSKEEI------DHIIMSKDAVSGT---------LRLFWTLLSK-QEEMVQKF 82

Query: 63  -DEVDNPDLGRKSIALPMNLKRINDIKQRMQQLQYIDSGIIDDFKNIEDEVGYFPASLSS 121
            +EV   +                 +   ++  Q   S +   +    D +       + 
Sbjct: 83  VEEVLRINYKF--------------LMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAK 128

Query: 122 KNSGMVGLEDRMEKLLDILKEGPPQLSVVAF----------AAEAYSNSDVKHYFNCHA- 170
            N   V       KL   L E  P  +V+            A +   +  V+   +    
Sbjct: 129 YN---VSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIF 185

Query: 171 WVPEPYNYDADDDQILDMIMKFLM--------PSSRLSIIKDKNYEMKKKIQQYLMIKRY 222
           W+          + +L+M+ K L          S   S IK + + ++ ++++ L  K Y
Sbjct: 186 WLN--LKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY 243

Query: 223 ---LIVVDDVWRIEVWDVIREIVPDNQNGCGVLITLIEIDIV------ISFHISLKENIE 273
              L+V+ +V   + W+            C +L+T     +        + HISL ++  
Sbjct: 244 ENCLLVLLNVQNAKAWNAF-------NLSCKILLTTRFKQVTDFLSAATTTHISL-DHHS 295

Query: 274 EALDEPLGLQVVAYCM--------------LPFYLKLCCLYLSVFPVHFE----ISTKQL 315
             L       ++   +               P  L +    +      ++    ++  +L
Sbjct: 296 MTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKL 355

Query: 316 YQSWIAEGFITDNNEATAEKYLEQLINGGFVILIEEAK 353
               I E  +     A   K  ++L      +    A 
Sbjct: 356 TT--IIESSLNVLEPAEYRKMFDRL-----SVFPPSAH 386
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens} Length = 591 Back     alignment and structure
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens} Length = 591 Back     alignment and structure
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A* Length = 549 Back     alignment and structure
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A* Length = 549 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query369
2a5y_B549 CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis 100.0
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 99.94
3sfz_A 1249 APAF-1, apoptotic peptidase activating factor 1; a 99.94
1z6t_A 591 APAF-1, apoptotic protease activating factor 1; ca 99.88
3qfl_A115 MLA10; coiled-coil, (CC) domain, NLRS, nucleotide- 99.16
1w5s_A 412 Origin recognition complex subunit 2 ORC2; replica 97.71
2qen_A350 Walker-type ATPase; unknown function; HET: ADP; 2. 97.04
2v1u_A387 Cell division control protein 6 homolog; DNA repli 96.89
1fnn_A 389 CDC6P, cell division control protein 6; ORC1, AAA 96.78
2qby_B384 CDC6 homolog 3, cell division control protein 6 ho 96.76
2qby_A 386 CDC6 homolog 1, cell division control protein 6 ho 96.64
2fna_A357 Conserved hypothetical protein; structural genomic 96.4
2chg_A226 Replication factor C small subunit; DNA-binding pr 95.16
1njg_A250 DNA polymerase III subunit gamma; rossman-like fol 94.54
1sxj_B323 Activator 1 37 kDa subunit; clamp loader, processi 91.28
1iqp_A327 RFCS; clamp loader, extended AAA-ATPase domain, co 85.64
1jbk_A195 CLPB protein; beta barrel, chaperone; 1.80A {Esche 84.79
3te6_A318 Regulatory protein SIR3; heterochromatin, gene sil 82.4
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A* Back     alignment and structure
Probab=100.00  E-value=1.5e-34  Score=288.66  Aligned_cols=228  Identities=18%  Similarity=0.223  Sum_probs=173.3

Q ss_pred             ccchHHHHHHHHHHhcC-CCCcEEee-----------hHHHHhc--CcCccccccceEEEecCCCC--CcChHHHHHHHH
Q 046471          127 VGLEDRMEKLLDILKEG-PPQLSVVA-----------FAAEAYS--NSDVKHYFNCHAWVPEPYNY--DADDDQILDMIM  190 (369)
Q Consensus       127 vGr~~~~~~l~~~L~~~-~~~~~vi~-----------LA~~vy~--~~~v~~~F~~~~wv~vs~~~--~~~~~~il~~il  190 (369)
                      |||+.++++|.++|..+ +...+||+           ||+++|+  +.+++.+|++++||++++.+  +...  +++.|+
T Consensus       131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~--~~~~il  208 (549)
T 2a5y_B          131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFD--LFTDIL  208 (549)
T ss_dssp             CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHH--HHHHHH
T ss_pred             CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHH--HHHHHH
Confidence            69999999999999765 33455555           9999998  78999999999999999985  7788  999999


Q ss_pred             HHhCcCCc----cccccccHHHHHHHHHHhcCCc-eEEEEEeCCCCchhHHHhhhhcCCCCCCceEEEEecchhhhhhcc
Q 046471          191 KFLMPSSR----LSIIKDKNYEMKKKIQQYLMIK-RYLIVVDDVWRIEVWDVIREIVPDNQNGCGVLITLIEIDIVISFH  265 (369)
Q Consensus       191 ~~l~~~~~----~~~~~~~~~~~~~~l~~~L~~k-r~LlVLDdvw~~~~w~~l~~~l~~~~~gs~IivTTr~~~va~~~~  265 (369)
                      .+++....    ......+.+.+...+++.|++| ||||||||||+.+.+ .+..     .+||+||||||+..|+..+.
T Consensus       209 ~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~-~~~~-----~~gs~ilvTTR~~~v~~~~~  282 (549)
T 2a5y_B          209 LMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETI-RWAQ-----ELRLRCLVTTRDVEISNAAS  282 (549)
T ss_dssp             HHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHH-HHHH-----HTTCEEEEEESBGGGGGGCC
T ss_pred             HHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhh-cccc-----cCCCEEEEEcCCHHHHHHcC
Confidence            99987632    1111225678899999999996 999999999998754 1111     16999999999999987651


Q ss_pred             ----------c--------------------------------------ccc--------c------ccccccc--CCc-
Q 046471          266 ----------I--------------------------------------SLK--------E------NIEEALD--EPL-  280 (369)
Q Consensus       266 ----------L--------------------------------------a~k--------~------~~~~~l~--~~~-  280 (369)
                                |                                      |.+        +      .+.+.+.  ... 
T Consensus       283 ~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~~w~~~~~l~~~l~~~~~~~  362 (549)
T 2a5y_B          283 QTCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNPATLMMFFKSCEPKTFEKMAQLNNKLESRGLVG  362 (549)
T ss_dssp             SCEEEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSSHHHHHHHHHHHHHHCSST
T ss_pred             CCCeEEECCCCCHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhCCChHHHHHHHHHhccchHHHHHHhHHHhhcccHHH
Confidence                      1                                      111        0      0000110  111 


Q ss_pred             --chhHhhhcCCchhhHHHHh-----------hhhcCCCCceechHHHHHHHHHc--CCCCCCc-----HHHHHHHHHHH
Q 046471          281 --GLQVVAYCMLPFYLKLCCL-----------YLSVFPVHFEISTKQLYQSWIAE--GFITDNN-----EATAEKYLEQL  340 (369)
Q Consensus       281 --~il~~sy~~L~~~lk~cfl-----------y~s~fP~~~~i~~~~Li~~W~ae--g~i~~~~-----e~~~~~~~~~L  340 (369)
                        .+|.+||++||+++|.||+           |||+||+++.|+    +++|+|+  ||+...+     +++++ ||++|
T Consensus       363 i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~~~~~~~-~l~~L  437 (549)
T 2a5y_B          363 VECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQLDDEVAD-RLKRL  437 (549)
T ss_dssp             TCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCCTHHHHH-HHHHT
T ss_pred             HHHHHhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCCCCCHHHHHH-HHHHH
Confidence              3489999999999999999           999999999999    8999999  9997543     77787 99999


Q ss_pred             HhCCCceeeeccCCeEEEEecCcccccC
Q 046471          341 INGGFVILIEEAKGLVFIYKHLTMHEQE  368 (369)
Q Consensus       341 ~~r~ll~~~~~~~g~~~~~~h~~~hdl~  368 (369)
                      +++||+++...+ +...|.+||+|||+|
T Consensus       438 ~~rsLl~~~~~~-~~~~~~mHdlv~~~a  464 (549)
T 2a5y_B          438 SKRGALLSGKRM-PVLTFKIDHIIHMFL  464 (549)
T ss_dssp             TTBSSCSEEECS-SSCEEECCHHHHHHH
T ss_pred             HHcCCeeEecCC-CceEEEeChHHHHHH
Confidence            999999987653 222344599999976
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Back     alignment and structure
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Back     alignment and structure
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens} Back     alignment and structure
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare} Back     alignment and structure
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A* Back     alignment and structure
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi} Back     alignment and structure
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} Back     alignment and structure
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 Back     alignment and structure
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} Back     alignment and structure
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} Back     alignment and structure
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20 Back     alignment and structure
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} Back     alignment and structure
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A* Back     alignment and structure
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20 Back     alignment and structure
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 369
d2a5yb3277 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenor 9e-06
>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} Length = 277 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 44.4 bits (104), Expect = 9e-06
 Identities = 19/147 (12%), Positives = 38/147 (25%), Gaps = 25/147 (17%)

Query: 127 VGLEDRMEKLLDILKE------------GPPQLSVVAFAAEAYSNSD--VKHYFNCHAWV 172
              E  +++++  L E            G         A++A S SD  +   ++   W+
Sbjct: 23  YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWL 82

Query: 173 PEPYNYDADD--DQILDMIMKFLMPSSR---LSIIKDKNYEMKKKIQQYLMIKRYLIVVD 227
            +               ++M                      +      +     L V D
Sbjct: 83  KDSGTAPKSTFDLFTDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFD 142

Query: 228 DVWRIEVWDVIREIVPDNQNGCGVLIT 254
           DV + E            +     L+T
Sbjct: 143 DVVQEETIR------WAQELRLRCLVT 163

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query369
d2a5yb3277 CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI 99.88
d1r6bx2268 ClpA, an Hsp100 chaperone, AAA+ modules {Escherich 91.34
d1fnna2276 CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T 88.94
d1njfa_239 delta prime subunit of DNA polymerase III, N-domai 87.78
d1jbka_195 ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} 87.24
d1qvra2 387 ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 86.51
d2fnaa2283 Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ 81.07
>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.88  E-value=5.3e-23  Score=185.31  Aligned_cols=135  Identities=16%  Similarity=0.112  Sum_probs=102.5

Q ss_pred             CCCccccchHHHHHHHHHHhc-CCCCcEEee-----------hHHHHhcCcC--ccccccceEEEecCCCCCcChHHHHH
Q 046471          122 KNSGMVGLEDRMEKLLDILKE-GPPQLSVVA-----------FAAEAYSNSD--VKHYFNCHAWVPEPYNYDADDDQILD  187 (369)
Q Consensus       122 ~~~~~vGr~~~~~~l~~~L~~-~~~~~~vi~-----------LA~~vy~~~~--v~~~F~~~~wv~vs~~~~~~~~~il~  187 (369)
                      .+..++||+.++++|+++|.. .+.+..+|+           ||+++||+..  ++.+|++++||++++.++...  +..
T Consensus        18 ~~~~~~gR~~~~~~i~~~L~~~~~~~~~~v~I~GmgGiGKTtLA~~v~~~~~~~~~~~f~~~~Wv~vs~~~~~~~--l~~   95 (277)
T d2a5yb3          18 KQMTCYIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKST--FDL   95 (277)
T ss_dssp             CCCCSCCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHH--HHH
T ss_pred             CCCceeCcHHHHHHHHHHHHhccCCCceEEEEECCCCCCHHHHHHHHHHhhhhhhhhcCceEEEEEecCCCCHHH--HHH
Confidence            456789999999999999975 344455554           9999998643  777899999999999998887  766


Q ss_pred             HHHHHh---CcCCccccc----cccHHHHHHHHHHhcCCceEEEEEeCCCCchhHHHhhhhcCCCCCCceEEEEecchhh
Q 046471          188 MIMKFL---MPSSRLSII----KDKNYEMKKKIQQYLMIKRYLIVVDDVWRIEVWDVIREIVPDNQNGCGVLITLIEIDI  260 (369)
Q Consensus       188 ~il~~l---~~~~~~~~~----~~~~~~~~~~l~~~L~~kr~LlVLDdvw~~~~w~~l~~~l~~~~~gs~IivTTr~~~v  260 (369)
                      .+...+   +.......+    ..+.......+.+.|.+||||+||||||+.+.|+.+..      .|||||||||+..|
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~kr~LlVLDDv~~~~~~~~~~~------~~srilvTTR~~~v  169 (277)
T d2a5yb3          96 FTDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETIRWAQE------LRLRCLVTTRDVEI  169 (277)
T ss_dssp             HHHHHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHHHHHHH------TTCEEEEEESBGGG
T ss_pred             HHHHHHHHhcchhhcCCccchhhhhHHHHHHHHHHHhccCCeeEecchhhHHhhhhhhcc------cCceEEEEeehHHH
Confidence            665443   222211111    11444556678899999999999999999998876532      48999999999999


Q ss_pred             hhhc
Q 046471          261 VISF  264 (369)
Q Consensus       261 a~~~  264 (369)
                      |..+
T Consensus       170 ~~~~  173 (277)
T d2a5yb3         170 SNAA  173 (277)
T ss_dssp             GGGC
T ss_pred             HHhc
Confidence            9875
>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Back     information, alignment and structure
>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure