Citrus Sinensis ID: 046486

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200--
Protein Sequence
MVLKVDLSCSKCRKKVKKVLCKFPQIQEQSFDEKTNTVTIKVVSCSPEEIRDKLCCKGEGVIKTIEILKPDEKRLKDNKKPPQQDGDNKKPDNKKPPQPDGENPKLPLVPVPCYPPVWVCWKQCSEGKGWGPCHQLGFGQGRHCDWCYARLVYESWGGSCHSRVYCRGRCSDFTYGRCSYCTCGRCSDCTCEGNPPPSCTIS
Secondary Structure (PSIPRED)
cEEEEEcccHHHHHHHHHHHccccccEEEEEEcccccEEEEEEcccHHHHHHHHHHHccccEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cEEEEEccHHHHHHHHHHHHHccccccEEEEEccccEEEEEEccccHHHHHHHHHHccccEEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccccccccccccccccccccccccEEEEEEcccccccccccccccEccccEcccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
mvlkvdlscskcrKKVKKVLCkfpqiqeqsfdektnTVTIKvvscspeeiRDKLCCKGEGVIKTIEIlkpdekrlkdnkkppqqdgdnkkpdnkkppqpdgenpklplvpvpcyppvwvcwkqcsegkgwgpchqlgfgqgrhcdwCYARLVYeswggschsrvycrgrcsdftygrcsyctcgrcsdctcegnpppsctis
Flexible Loop (DISEMBL)
mvlkvdlscskcrkkvkkvlckfpqiqeqsfdektntvtikvvscspeeirdklcckgegviktieilkpdekrlkdnkkppqqdgdnkkpdnkkppqpdGENPKLPLVPVPCYPPVWVCWKQCSEGKGWGPCHQLGFGQGRHCDWCYARLVYESWGGSCHSRVYCRGRCSDFTYGRCSYCTCGRcsdctcegnpppsctis
Low Complexity Region (SEG)
MVLKVDlscskcrkkvkkvlckFPQIQEQSFDEKTNTVTIKVVSCSPEEIRDKLCCKGEGVIKTIEILKPDEKRLKDNKKPPqqdgdnkkpdnkkppqpdgENpklplvpvpcyppvwvcwkQCSEGKGWGPCHQLGFGQGRHCDWCYARLVYESWGGSCHSRVYCRGRCSDFTYGRCSYCTCGRCSDCTCEGNPPPSCTIS
Disordered region (IsUnstruct)
****VDLSCSKCRKKVKKVLCKFPQIQEQSFDEKTNTVTIKVVSCSPEEIRDKLCCKGEGVIKTIEIL**************************************PLVPVPCYPPVWVCWKQCSEGKGWGPCHQLGFGQGRHCDWCYARLVYESWGGSCHSRVYCRGRCSDFTYGRCSYCTCGRCSDCTC***********
Disordered Region (DISOPRED)
MVLKVDLSCSKCRKKVKKVLCKFPQIQEQSFDEKTNTVTIKVVSCSPEEIRDKLCCKGEGVIK****************************************************PVWVCWKQCSEGKGWGPCHQLGFGQGRHCDWCYARLVYESWGGSCHSRVYCRGRCSDFTYGRCSYCTCGRCSDCTCEGNPPP*****
Disordered Region (DISEMBL)
MVLKVDLSCSKCRKKVKKVLCKFPQIQEQSFDEKTNTVTIKVVSCSPEEIRDKLCCKGEGVIKTIEILKPDEKRL**************************ENPKLPLVPVPCYPPVWVCWKQCSEGKGWGPCHQLGFGQGRHCDWCYARLVYESWGGSCHSRVYCRGRCSDFTYGRCSYCTCGRCSDCTC***********
Disordered Region (DISPRO)
MVLKVDLSCSKCRKKVKKVLCKFPQIQEQSFDEKTNTVTIKVVSCSPEEIRDKLCCKGEGVIKTIEILKPD**********************************LPLVPVPCYPPVWVCWKQCSEGKGWGPCHQLGFGQGRHCDWCYARLVYESWGGSCHSRVYCRGRCSDFTYGRCSYCTCGRCSDCTCEGNPPPSC***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MVLKVDLSCSKCRKKVKKVLCKFPQIQEQSFDEKTNTVTIKVVSCSPEEIRDKLCCKGEGVIKTIEILKPDEKRLKDNKKPPQQDGDNKKPDNKKPPQPDGENPKLPLVPVPCYPPVWVCWKQCSEGKGWGPCHQLGFGQGRHCDWCYARLVYESWGGSCHSRVYCRGRCSDFTYGRCSYCTCGRCSDCTCEGNPPPSCTIS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	202
388494848	261	unknown [Medicago truncatula]	0.336	0.260	0.735	8e-19
357480619	261	Proline-rich protein [Medicago truncatul	0.336	0.260	0.735	8e-19
17473638	254	unknown protein [Arabidopsis thaliana] g	0.341	0.271	0.739	1e-18
240255932	254	metal ion binding protein [Arabidopsis t	0.341	0.271	0.739	1e-18
351721915	240	uncharacterized protein LOC547653 [Glyci	0.336	0.283	0.705	2e-18
449443496	286	PREDICTED: uncharacterized protein LOC10	0.326	0.230	0.716	2e-18
388497846	209	unknown [Medicago truncatula]	0.336	0.325	0.735	3e-18
194466241	232	putative metal ion-binding protein [Arac	0.346	0.301	0.714	3e-18
3242079	238	proline-rich protein [Capsicum annuum]	0.336	0.285	0.691	1e-17
297736719	160	unnamed protein product [Vitis vinifera]	0.663	0.837	0.411	2e-17

>gi|388494848|gb|AFK35490.1| unknown [Medicago truncatula]

 Score = 99.4 bits (246), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 50/68 (73%), Positives = 58/68 (85%)

Query: 1  MVLKVDLSCSKCRKKVKKVLCKFPQIQEQSFDEKTNTVTIKVVSCSPEEIRDKLCCKGEG 60
          M LKVDL C+KC KKVKKVLCKFPQI++Q +DEK N VTI VV CSPE+IRDK+CCKG G
Sbjct: 12 MKLKVDLQCAKCYKKVKKVLCKFPQIRDQVYDEKNNIVTITVVCCSPEKIRDKICCKGCG 71

Query: 61 VIKTIEIL 68
           IK+IEI+
Sbjct: 72 AIKSIEIV 79

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357480619|ref|XP_003610595.1| Proline-rich protein [Medicago truncatula] gi|355511650|gb|AES92792.1| Proline-rich protein [Medicago truncatula]

 Score = 99.4 bits (246), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 50/68 (73%), Positives = 58/68 (85%)

Query: 1  MVLKVDLSCSKCRKKVKKVLCKFPQIQEQSFDEKTNTVTIKVVSCSPEEIRDKLCCKGEG 60
          M LKVDL C+KC KKVKKVLCKFPQI++Q +DEK N VTI VV CSPE+IRDK+CCKG G
Sbjct: 12 MKLKVDLQCAKCYKKVKKVLCKFPQIRDQVYDEKNNIVTITVVCCSPEKIRDKICCKGCG 71

Query: 61 VIKTIEIL 68
           IK+IEI+
Sbjct: 72 AIKSIEIV 79

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|17473638|gb|AAL38281.1| unknown protein [Arabidopsis thaliana] gi|20148729|gb|AAM10255.1| unknown protein [Arabidopsis thaliana] gi|62320809|dbj|BAD93746.1| hypothetical protein [Arabidopsis thaliana]

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 51/69 (73%), Positives = 57/69 (82%)

Query: 1  MVLKVDLSCSKCRKKVKKVLCKFPQIQEQSFDEKTNTVTIKVVSCSPEEIRDKLCCKGEG 60
          M LKVDL C+KC KKVKKVLCKFPQI++Q FDEK+N V IKVV CSPE I DKLC KG G
Sbjct: 12 MKLKVDLDCAKCYKKVKKVLCKFPQIRDQLFDEKSNIVIIKVVCCSPERIMDKLCSKGGG 71

Query: 61 VIKTIEILK 69
           IKTIEI++
Sbjct: 72 SIKTIEIVE 80

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|240255932|ref|NP_974559.5| metal ion binding protein [Arabidopsis thaliana] gi|332658339|gb|AEE83739.1| metal ion binding protein [Arabidopsis thaliana]

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 51/69 (73%), Positives = 57/69 (82%)

Query: 1  MVLKVDLSCSKCRKKVKKVLCKFPQIQEQSFDEKTNTVTIKVVSCSPEEIRDKLCCKGEG 60
          M LKVDL C+KC KKVKKVLCKFPQI++Q FDEK+N V IKVV CSPE I DKLC KG G
Sbjct: 12 MKLKVDLDCAKCYKKVKKVLCKFPQIRDQLFDEKSNIVIIKVVCCSPERIMDKLCSKGGG 71

Query: 61 VIKTIEILK 69
           IKTIEI++
Sbjct: 72 SIKTIEIVE 80

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351721915|ref|NP_001235946.1| uncharacterized protein LOC547653 [Glycine max] gi|22597168|gb|AAN03471.1| unknown protein [Glycine max]

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 48/68 (70%), Positives = 57/68 (83%)

Query: 1  MVLKVDLSCSKCRKKVKKVLCKFPQIQEQSFDEKTNTVTIKVVSCSPEEIRDKLCCKGEG 60
          M LKVDL C KC KKVKK+LCKFPQI++Q +DEK N VTI VV C+PEE+RDK+CCKG G
Sbjct: 8  MRLKVDLQCHKCYKKVKKILCKFPQIRDQVYDEKNNIVTIAVVCCNPEELRDKICCKGCG 67

Query: 61 VIKTIEIL 68
           IK+IEI+
Sbjct: 68 TIKSIEIV 75

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449443496|ref|XP_004139513.1| PREDICTED: uncharacterized protein LOC101212464 [Cucumis sativus]

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 48/67 (71%), Positives = 58/67 (86%)

Query: 1  MVLKVDLSCSKCRKKVKKVLCKFPQIQEQSFDEKTNTVTIKVVSCSPEEIRDKLCCKGEG 60
          M+LKVDL C +C KKVKKVLCKFPQI++Q +DEK N V IKVV C+PE++RDK+CCKG G
Sbjct: 11 MMLKVDLQCDRCYKKVKKVLCKFPQIRDQIYDEKQNLVIIKVVCCNPEKLRDKICCKGCG 70

Query: 61 VIKTIEI 67
          VIK+IEI
Sbjct: 71 VIKSIEI 77

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388497846|gb|AFK36989.1| unknown [Medicago truncatula]

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 50/68 (73%), Positives = 58/68 (85%)

Query: 1  MVLKVDLSCSKCRKKVKKVLCKFPQIQEQSFDEKTNTVTIKVVSCSPEEIRDKLCCKGEG 60
          M LKVDL C+KC KKVKKVLCKFPQI++Q +DEK N VTI VV CSPE+IRDK+CCKG G
Sbjct: 12 MKLKVDLQCAKCYKKVKKVLCKFPQIRDQVYDEKNNIVTITVVCCSPEKIRDKICCKGCG 71

Query: 61 VIKTIEIL 68
           IK+IEI+
Sbjct: 72 AIKSIEIV 79

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|194466241|gb|ACF74351.1| putative metal ion-binding protein [Arachis hypogaea]

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 50/70 (71%), Positives = 56/70 (80%)

Query: 1  MVLKVDLSCSKCRKKVKKVLCKFPQIQEQSFDEKTNTVTIKVVSCSPEEIRDKLCCKGEG 60
          M LKVDL C KC KKVKKVL KFPQI+++ FDEK N VTI VV CSPE+IRDKLC KG G
Sbjct: 8  MKLKVDLECHKCYKKVKKVLAKFPQIRDEKFDEKQNIVTITVVCCSPEKIRDKLCYKGGG 67

Query: 61 VIKTIEILKP 70
           IK+IEI+ P
Sbjct: 68 SIKSIEIVDP 77

Source: Arachis hypogaea

Species: Arachis hypogaea

Genus: Arachis

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|3242079|emb|CAA07370.1| proline-rich protein [Capsicum annuum]

 Score = 95.5 bits (236), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 47/68 (69%), Positives = 57/68 (83%)

Query: 1  MVLKVDLSCSKCRKKVKKVLCKFPQIQEQSFDEKTNTVTIKVVSCSPEEIRDKLCCKGEG 60
          MVLKVDL C  C KKVKK+LCKFPQI++Q +DEK N VTI V+ C+PE++RDKLC KG G
Sbjct: 1  MVLKVDLQCCSCYKKVKKILCKFPQIRDQIYDEKGNKVTITVICCNPEKLRDKLCSKGCG 60

Query: 61 VIKTIEIL 68
          VIK+IEI+
Sbjct: 61 VIKSIEII 68

Source: Capsicum annuum

Species: Capsicum annuum

Genus: Capsicum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297736719|emb|CBI25755.3| unnamed protein product [Vitis vinifera]

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 67/163 (41%), Positives = 84/163 (51%), Gaps = 29/163 (17%)

Query: 1   MVLKVDLSCSKCRKKVKKVLCKFPQIQEQSFDEKTNTVTIKVVSCSPEEIRDKLCCKGEG 60
           MVLKVDL C +C +K+KK+LCKFP+IQ+Q+F EK +TV IKVV C PE+IR KL CKG  
Sbjct: 1   MVLKVDLGCKRCYRKIKKLLCKFPEIQDQTFIEKEDTVRIKVVCCCPEKIRTKLICKGGH 60

Query: 61  VIKTIEILKPDEKRLKDNKKPPQQDGDNKKPDNKKPPQPDGENPKLPLVPVPCYPPVWVC 120
            IK+IE++ P            +     KK   + P  P G                 VC
Sbjct: 61  SIKSIEVITPVNP---------KLPPQQKKKPQQSPEYPTG-----------------VC 94

Query: 121 WKQCSEGKGWGPC-HQLGFGQGRHCDWCYARLV--YESWGGSC 160
            K C EG+  GPC H+ G          Y RLV  Y+ W   C
Sbjct: 95  CKSCYEGRRGGPCYHEYGIPHQPPSYDGYIRLVPSYDGWASGC 137

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	202
TAIR|locus:1006589875	254	AT4G16380 [Arabidopsis thalian	0.405	0.322	0.5	2e-21
TAIR|locus:2026042	171	AT1G51090 [Arabidopsis thalian	0.400	0.473	0.439	2.7e-18
TAIR|locus:2010192	189	AT1G49420 [Arabidopsis thalian	0.287	0.306	0.551	2.1e-13

TAIR|locus:1006589875 AT4G16380 [Arabidopsis thaliana (taxid:3702)]

 Score = 187 (70.9 bits), Expect = 2.0e-21, Sum P(2) = 2.0e-21
 Identities = 41/82 (50%), Positives = 49/82 (59%)

Query:     1 MVLKVDXXXXXXXXXXXXXXXXFPQIQEQSFDEKTNTVTIKVVSCSPEEIRDKLCCKGEG 60
             M LKVD                FPQI++Q FDEK+N V IKVV CSPE I DKLC KG G
Sbjct:    12 MKLKVDLDCAKCYKKVKKVLCKFPQIRDQLFDEKSNIVIIKVVCCSPERIMDKLCSKGGG 71

Query:    61 VIKTIEILKPDEKRLKDNKKPP 82
              IKTIEI++P +      ++PP
Sbjct:    72 SIKTIEIVEPPKPPQPQPQQPP 93

GO:0005634 "nucleus" evidence=ISM

GO:0030001 "metal ion transport" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2026042 AT1G51090 [Arabidopsis thaliana (taxid:3702)]

 Score = 158 (60.7 bits), Expect = 2.7e-18, Sum P(2) = 2.7e-18
 Identities = 36/82 (43%), Positives = 47/82 (57%)

Query:     1 MVLKVDXXXXXXXXXXXXXXXXFPQIQEQSFDEKTNTVTIKVVSCSPEEIRDKLCCKGEG 60
             M LKVD                FPQI ++ FDEK+NT+ IKVV   PE + +KLC KG+G
Sbjct:     8 MKLKVDLNCSKCYKKVKKAIRKFPQITDELFDEKSNTIIIKVVCYDPERLMNKLCYKGDG 67

Query:    61 VIKTIEILKPDEKRLKDNKKPP 82
              IK+I IL+P  K  +   +PP
Sbjct:    68 SIKSIVILEPP-KPPQPQPQPP 88

GO:0005634 "nucleus" evidence=ISM

GO:0030001 "metal ion transport" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA;ISS

GO:0050832 "defense response to fungus" evidence=IEP

GO:0009409 "response to cold" evidence=RCA

GO:0009414 "response to water deprivation" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

TAIR|locus:2010192 AT1G49420 [Arabidopsis thaliana (taxid:3702)]

 Score = 175 (66.7 bits), Expect = 2.1e-13, P = 2.1e-13
 Identities = 32/58 (55%), Positives = 43/58 (74%)

Query:    24 PQIQEQSFDEKTNTVTIKVVSCSPEEIRDKLCCKGEGVIKTIEILKPDEKRLKDNKKP 81
             PQ+++Q F+E+TNTVTIKVV CSPE++ DKLC KG G IK IE + P +   +  K+P
Sbjct:    36 PQVRDQKFEEETNTVTIKVVCCSPEKVMDKLCSKGRGAIKLIETIDPAKHVAQKPKEP 93


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.321   0.139   0.487    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      202       148   0.00068  104 3  12 22  0.47    31
                                                     30  0.39    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  566 (60 KB)
  Total size of DFA:  135 KB (2084 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  11.21u 0.15s 11.36t   Elapsed:  00:00:01
  Total cpu time:  11.21u 0.15s 11.36t   Elapsed:  00:00:01
  Start:  Sat May 11 14:02:19 2013   End:  Sat May 11 14:02:20 2013

GO:0005634 "nucleus" evidence=ISM

GO:0030001 "metal ion transport" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA;ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	202
pfam00403	62	pfam00403, HMA, Heavy-metal-associated domain	3e-06

>gnl|CDD|215902 pfam00403, HMA, Heavy-metal-associated domain

 Score = 42.6 bits (101), Expect = 3e-06
 Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 2/56 (3%)

Query: 2  VLKVDLSCSKCRKKVKKVLCKFPQIQEQSFDEKTNTVTIK--VVSCSPEEIRDKLC 55
          +    ++C+ C KKV+K L K P +   S D +T  VT+         E+++  + 
Sbjct: 2  LRVPGMTCAGCAKKVEKALSKLPGVSSVSVDLETGKVTVTGDPDPLKLEKLKKAIE 57

Length = 62

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	202
PF00403	62	HMA: Heavy-metal-associated domain; InterPro: IPR0	99.47
KOG1603	73	consensus Copper chaperone [Inorganic ion transpor	99.46
COG2608	71	CopZ Copper chaperone [Inorganic ion transport and	99.29
KOG4656	247	consensus Copper chaperone for superoxide dismutas	99.11
PLN02957	238	copper, zinc superoxide dismutase	98.27
PRK10671	834	copA copper exporting ATPase; Provisional	98.12
TIGR00003	68	copper ion binding protein. This model describes a	97.42
COG2217	713	ZntA Cation transport ATPase [Inorganic ion transp	97.11
KOG0207	951	consensus Cation transport ATPase [Inorganic ion t	96.41
PRK10671	834	copA copper exporting ATPase; Provisional	96.41
KOG0207	951	consensus Cation transport ATPase [Inorganic ion t	96.01
PRK11033	741	zntA zinc/cadmium/mercury/lead-transporting ATPase	95.49
COG1888	97	Uncharacterized protein conserved in archaea [Func	95.48
PF02680	95	DUF211: Uncharacterized ArCR, COG1888; InterPro: I	95.4
TIGR02052	92	MerP mercuric transport protein periplasmic compon	89.4
PF13732	84	DUF4162: Domain of unknown function (DUF4162)	84.49
PF01206	70	TusA: Sulfurtransferase TusA; InterPro: IPR001455	83.92

>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures

Probab=99.47  E-value=3.6e-13  Score=92.48  Aligned_cols=57  Identities=35%  Similarity=0.543  Sum_probs=52.9

Q ss_pred             EEEE-cccChhhHHHHHHHHhcCCCceEEEEEcCCCEEEEEee--cCCHHHHHHHHHhhcC
Q 046486            2 VLKV-DLSCSKCRKKVKKVLCKFPQIQEQSFDEKTNTVTIKVV--SCSPEEIRDKLCCKGE   59 (202)
Q Consensus         2 vLKV-~M~C~gCakKIkKaL~ki~GV~~VeVDlk~~tVtV~G~--~vdpekL~~kL~~KtG   59 (202)
                      +|+| +|+|++|+++|+++|.+++||.++++|+.+++|+|.++  ..++++|.++|+ ++|
T Consensus         1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~~~~v~v~~~~~~~~~~~i~~~i~-~~G   60 (62)
T PF00403_consen    1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLETKTVTVTYDPDKTSIEKIIEAIE-KAG   60 (62)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEESTTTSCHHHHHHHHH-HTT
T ss_pred             CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECCCCEEEEEEecCCCCHHHHHHHHH-HhC
Confidence            6899 99999999999999999999999999999999999985  245799999999 788

These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....

>KOG1603 consensus Copper chaperone [Inorganic ion transport and metabolism]

Probab=99.46  E-value=2.1e-13  Score=98.49  Aligned_cols=63  Identities=37%  Similarity=0.577  Sum_probs=57.3

Q ss_pred             EEEEcccChhhHHHHHHHHhcCCCceEEEEEcCCCEEEEEeecCCHHHHHHHHHhhcCCceeeEEEc
Q 046486            2 VLKVDLSCSKCRKKVKKVLCKFPQIQEQSFDEKTNTVTIKVVSCSPEEIRDKLCCKGEGVIKTIEIL   68 (202)
Q Consensus         2 vLKV~M~C~gCakKIkKaL~ki~GV~~VeVDlk~~tVtV~G~~vdpekL~~kL~~KtGk~iK~aEIV   68 (202)
                      +++|+|||++|+.+|+++|+.+.||.++.+|.++++|||.| .+++..|+++|++.++   +.+++|
T Consensus         8 v~kv~~~C~gc~~kV~~~l~~~~GV~~v~id~~~~kvtV~g-~~~p~~vl~~l~k~~~---k~~~~~   70 (73)
T KOG1603|consen    8 VLKVNMHCEGCARKVKRVLQKLKGVESVDIDIKKQKVTVKG-NVDPVKLLKKLKKTGG---KRAELW   70 (73)
T ss_pred             EEEECcccccHHHHHHHHhhccCCeEEEEecCCCCEEEEEE-ecCHHHHHHHHHhcCC---CceEEe
Confidence            68889999999999999999999999999999999999999 6999999999996554   555555

>COG2608 CopZ Copper chaperone [Inorganic ion transport and metabolism]

Probab=99.29  E-value=1.7e-11  Score=88.35  Aligned_cols=58  Identities=24%  Similarity=0.375  Sum_probs=52.7

Q ss_pred             CEEEE-cccChhhHHHHHHHHhcCCCceEEEEEcCCCEEEEEee--cCCHHHHHHHHHhhcC
Q 046486            1 MVLKV-DLSCSKCRKKVKKVLCKFPQIQEQSFDEKTNTVTIKVV--SCSPEEIRDKLCCKGE   59 (202)
Q Consensus         1 mvLKV-~M~C~gCakKIkKaL~ki~GV~~VeVDlk~~tVtV~G~--~vdpekL~~kL~~KtG   59 (202)
                      +.|+| +|+|++|+++|+++|.+++||.+++||++.++++|..+  .++.++|+++|. ++|
T Consensus         4 ~~l~v~~MtC~~C~~~V~~al~~v~gv~~v~v~l~~~~~~V~~d~~~~~~~~i~~ai~-~aG   64 (71)
T COG2608           4 TTLKVEGMTCGHCVKTVEKALEEVDGVASVDVDLEKGTATVTFDSNKVDIEAIIEAIE-DAG   64 (71)
T ss_pred             EEEEECCcCcHHHHHHHHHHHhcCCCeeEEEEEcccCeEEEEEcCCcCCHHHHHHHHH-HcC
Confidence            36889 99999999999999999999999999999977777655  379999999999 888

>KOG4656 consensus Copper chaperone for superoxide dismutase [Inorganic ion transport and metabolism]

Probab=99.11  E-value=1.8e-10  Score=100.19  Aligned_cols=69  Identities=22%  Similarity=0.390  Sum_probs=65.4

Q ss_pred             CEEEEcccChhhHHHHHHHHhcCCCceEEEEEcCCCEEEEEeecCCHHHHHHHHHhhcCCceeeEEEcCCCCCC
Q 046486            1 MVLKVDLSCSKCRKKVKKVLCKFPQIQEQSFDEKTNTVTIKVVSCSPEEIRDKLCCKGEGVIKTIEILKPDEKR   74 (202)
Q Consensus         1 mvLKV~M~C~gCakKIkKaL~ki~GV~~VeVDlk~~tVtV~G~~vdpekL~~kL~~KtGk~iK~aEIVsp~kpk   74 (202)
                      ++|.|+|+|++|++.|+..|..++||.+|+||++++.|.|.+ ++.+.+|.++|+ .+|   +++.|...+++.
T Consensus         9 ~efaV~M~cescvnavk~~L~~V~Gi~~vevdle~q~v~v~t-s~p~s~i~~~le-~tG---r~Avl~G~G~ps   77 (247)
T KOG4656|consen    9 AEFAVQMTCESCVNAVKACLKGVPGINSVEVDLEQQIVSVET-SVPPSEIQNTLE-NTG---RDAVLRGAGKPS   77 (247)
T ss_pred             EEEEEechhHHHHHHHHHHhccCCCcceEEEEhhhcEEEEEc-cCChHHHHHHHH-hhC---hheEEecCCchh
Confidence            368999999999999999999999999999999999999999 899999999999 899   999999998864

>PLN02957 copper, zinc superoxide dismutase

Probab=98.27  E-value=5.1e-06  Score=72.19  Aligned_cols=67  Identities=16%  Similarity=0.285  Sum_probs=59.8

Q ss_pred             CEEEEcccChhhHHHHHHHHhcCCCceEEEEEcCCCEEEEEeecCCHHHHHHHHHhhcCCceeeEEEcCCCC
Q 046486            1 MVLKVDLSCSKCRKKVKKVLCKFPQIQEQSFDEKTNTVTIKVVSCSPEEIRDKLCCKGEGVIKTIEILKPDE   72 (202)
Q Consensus         1 mvLKV~M~C~gCakKIkKaL~ki~GV~~VeVDlk~~tVtV~G~~vdpekL~~kL~~KtGk~iK~aEIVsp~k   72 (202)
                      +.|.|+|+|+.|+++|+++|.+++||.++.+|+.+++++|.. ..+.+.|+++|+ ++|   +.+++++...
T Consensus         8 ~~~~VgMsC~~Ca~~Iek~L~~~~GV~~v~vn~~~~~v~V~~-~~~~~~I~~aIe-~~G---y~a~~~~~~~   74 (238)
T PLN02957          8 TEFMVDMKCEGCVAAVKNKLETLEGVKAVEVDLSNQVVRVLG-SSPVKAMTAALE-QTG---RKARLIGQGD   74 (238)
T ss_pred             EEEEECccCHHHHHHHHHHHhcCCCeEEEEEEcCCCEEEEEe-cCCHHHHHHHHH-HcC---CcEEEecCCC
Confidence            357789999999999999999999999999999999999998 678999999999 888   7788887654

>PRK10671 copA copper exporting ATPase; Provisional

Probab=98.12  E-value=7.6e-06  Score=81.71  Aligned_cols=62  Identities=19%  Similarity=0.378  Sum_probs=54.2

Q ss_pred             CEEEE-cccChhhHHHHHHHHhcCCCceEEEEEcCCCEEEEEeecCCHHHHHHHHHhhcCCceeeEEEcC
Q 046486            1 MVLKV-DLSCSKCRKKVKKVLCKFPQIQEQSFDEKTNTVTIKVVSCSPEEIRDKLCCKGEGVIKTIEILK   69 (202)
Q Consensus         1 mvLKV-~M~C~gCakKIkKaL~ki~GV~~VeVDlk~~tVtV~G~~vdpekL~~kL~~KtGk~iK~aEIVs   69 (202)
                      ++|+| +|+|.+|+++|+++|.+++||.+++||++  +++|++ ..+.+.|.++|+ +.|   +.+++.+
T Consensus         5 ~~l~V~gmtC~~C~~~i~~al~~~~gv~~v~v~~~--~~~v~~-~~~~~~i~~~i~-~~G---y~~~~~~   67 (834)
T PRK10671          5 IDLTLDGLSCGHCVKRVKESLEQRPDVEQADVSIT--EAHVTG-TASAEALIETIK-QAG---YDASVSH   67 (834)
T ss_pred             EEEEECCcccHHHHHHHHHHHhcCCCcceEEEeee--EEEEEe-cCCHHHHHHHHH-hcC---Ccccccc
Confidence            36889 99999999999999999999999999994  566666 579999999999 889   6777765

>TIGR00003 copper ion binding protein

Probab=97.42  E-value=0.0017  Score=39.93  Aligned_cols=57  Identities=12%  Similarity=0.339  Sum_probs=47.1

Q ss_pred             EEEE-cccChhhHHHHHHHHhcCCCceEEEEEcCCCEEEEEee--cCCHHHHHHHHHhhcC
Q 046486            2 VLKV-DLSCSKCRKKVKKVLCKFPQIQEQSFDEKTNTVTIKVV--SCSPEEIRDKLCCKGE   59 (202)
Q Consensus         2 vLKV-~M~C~gCakKIkKaL~ki~GV~~VeVDlk~~tVtV~G~--~vdpekL~~kL~~KtG   59 (202)
                      .|.| +|+|..|+..|++.|..+.++..+.+++..+++.|..+  ..+...+...|. ..|
T Consensus         5 ~~~v~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g   64 (68)
T TIGR00003         5 TVQVMSMTCQHCVDKIEKFVGELEGVSKVQVKLEKASVKVEFDAPQATEICIAEAIL-DAG   64 (68)
T ss_pred             EEEECCeEcHHHHHHHHHHHhcCCCEEEEEEEcCCCEEEEEeCCCCCCHHHHHHHHH-HcC
Confidence            4677 89999999999999999999999999999999988752  246677777665 445

This model describes an apparently copper-specific subfamily of the metal-binding domain HMA (Pfam family pfam00403). Closely related sequences outside this model include mercury resistance proteins and repeated domains of eukaryotic eukaryotic copper transport proteins. Members of this family are strictly prokaryotic. The model identifies both small proteins consisting of just this domain and N-terminal regions of cation (probably copper) transporting ATPases.

>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]

Probab=97.11  E-value=0.0012  Score=66.06  Aligned_cols=56  Identities=23%  Similarity=0.474  Sum_probs=50.5

Q ss_pred             EEEE-cccChhhHHHHHHHHhcCCCceEEEEEcCCCEEEEEee--cCC-HHHHHHHHHhhcC
Q 046486            2 VLKV-DLSCSKCRKKVKKVLCKFPQIQEQSFDEKTNTVTIKVV--SCS-PEEIRDKLCCKGE   59 (202)
Q Consensus         2 vLKV-~M~C~gCakKIkKaL~ki~GV~~VeVDlk~~tVtV~G~--~vd-pekL~~kL~~KtG   59 (202)
                      .|.| +|+|..|+.+|+ +|.+++||.++.|++.+.+++|..+  ..+ .+.+..+++ +.|
T Consensus         5 ~l~v~Gm~Ca~C~~~ie-~l~~~~gV~~~~vn~~t~~~~v~~~~~~~~~~~~~~~~v~-~~g   64 (713)
T COG2217           5 SLSVEGMTCAACASRIE-ALNKLPGVEEARVNLATERATVVYDPEEVDLPADIVAAVE-KAG   64 (713)
T ss_pred             EEeecCcCcHHHHHHHH-HHhcCCCeeEEEeecccceEEEEecccccccHHHHHHHHH-hcC
Confidence            5788 999999999999 9999999999999999999999864  245 788999999 778

>KOG0207 consensus Cation transport ATPase [Inorganic ion transport and metabolism]

Probab=96.41  E-value=0.0073  Score=62.03  Aligned_cols=64  Identities=19%  Similarity=0.371  Sum_probs=58.4

Q ss_pred             cccChhhHHHHHHHHhcCCCceEEEEEcCCCEEEEEee-cCCHHHHHHHHHhhcCCceeeEEEcCCCCC
Q 046486            6 DLSCSKCRKKVKKVLCKFPQIQEQSFDEKTNTVTIKVV-SCSPEEIRDKLCCKGEGVIKTIEILKPDEK   73 (202)
Q Consensus         6 ~M~C~gCakKIkKaL~ki~GV~~VeVDlk~~tVtV~G~-~vdpekL~~kL~~KtGk~iK~aEIVsp~kp   73 (202)
                      +|+|..|.+.|+++|++.+||.+++|++.+++.+|.-+ .++++.|++.|+ ..|   ..+++++....
T Consensus         2 gmtc~ac~~si~~~~~~~~g~~~i~vsl~~~~~~v~~~~~~~~~~i~~~ie-d~g---f~~~~~~~~~~   66 (951)
T KOG0207|consen    2 GMTCSACSNSIEKAISRKPGVQKIEVSLAQKRANVSYDNIVSPESIKETIE-DMG---FEASLLSDSEI   66 (951)
T ss_pred             CccHHHHhhhHHHHHhcCCCceeEEEEeccccceEEEeeccCHHHHHHHhh-ccc---ceeeecccCcc
Confidence            69999999999999999999999999999999999765 689999999999 777   89999887654

>PRK10671 copA copper exporting ATPase; Provisional

Probab=96.41  E-value=0.0085  Score=60.22  Aligned_cols=56  Identities=21%  Similarity=0.417  Sum_probs=50.6

Q ss_pred             EEEE-cccChhhHHHHHHHHhcCCCceEEEEEcCCCEEEEEeecCCHHHHHHHHHhhcC
Q 046486            2 VLKV-DLSCSKCRKKVKKVLCKFPQIQEQSFDEKTNTVTIKVVSCSPEEIRDKLCCKGE   59 (202)
Q Consensus         2 vLKV-~M~C~gCakKIkKaL~ki~GV~~VeVDlk~~tVtV~G~~vdpekL~~kL~~KtG   59 (202)
                      .|.| +|+|.+|+..|++.|.+++||.++.+++..+++.|.+ ..+.+.+.+.|. +.|
T Consensus       102 ~l~V~Gm~Ca~Ca~~Ie~~L~~~~GV~~a~vnl~t~~~~V~~-~~s~~~I~~~I~-~~G  158 (834)
T PRK10671        102 QLLLSGMSCASCVSRVQNALQSVPGVTQARVNLAERTALVMG-SASPQDLVQAVE-KAG  158 (834)
T ss_pred             EEEeCCcCcHHHHHHHHHHHhcCCCceeeeeecCCCeEEEEc-cCCHHHHHHHHH-hcC
Confidence            4778 9999999999999999999999999999999999876 578888888888 777

>KOG0207 consensus Cation transport ATPase [Inorganic ion transport and metabolism]

Probab=96.01  E-value=0.016  Score=59.55  Aligned_cols=58  Identities=19%  Similarity=0.381  Sum_probs=52.2

Q ss_pred             CEEEE-cccChhhHHHHHHHHhcCCCceEEEEEcCCCEEEEEee--cCCHHHHHHHHHhhcC
Q 046486            1 MVLKV-DLSCSKCRKKVKKVLCKFPQIQEQSFDEKTNTVTIKVV--SCSPEEIRDKLCCKGE   59 (202)
Q Consensus         1 mvLKV-~M~C~gCakKIkKaL~ki~GV~~VeVDlk~~tVtV~G~--~vdpekL~~kL~~KtG   59 (202)
                      ++|.| +|.|.+|..+|++.|.+++||+++.+|+.++++.|.-+  ...+-++.+.|+ .+|
T Consensus       148 i~L~v~g~~c~s~~~~ie~~l~~l~gV~~~sv~~~t~~~~V~~~~~~~~pr~i~k~ie-~~~  208 (951)
T KOG0207|consen  148 IYLDVLGMTCASCVSKIESILERLRGVKSFSVSLATDTAIVVYDPEITGPRDIIKAIE-ETG  208 (951)
T ss_pred             EEEEeecccccchhhhhHHHHhhccCeeEEEEeccCCceEEEecccccChHHHHHHHH-hhc
Confidence            36888 99999999999999999999999999999999999875  467888999998 666

>PRK11033 zntA zinc/cadmium/mercury/lead-transporting ATPase; Provisional

Probab=95.49  E-value=0.041  Score=55.02  Aligned_cols=57  Identities=14%  Similarity=0.292  Sum_probs=46.5

Q ss_pred             EEEE-cccChhhHHHHHHHHhcCCCceEEEEEcCCCEEEEEeecCCHHHHHHHHHhhcC
Q 046486            2 VLKV-DLSCSKCRKKVKKVLCKFPQIQEQSFDEKTNTVTIKVVSCSPEEIRDKLCCKGE   59 (202)
Q Consensus         2 vLKV-~M~C~gCakKIkKaL~ki~GV~~VeVDlk~~tVtV~G~~vdpekL~~kL~~KtG   59 (202)
                      .|+| +|+|.+|+.+|+++|.+++||.++.+++.++++.|..+....+.+.+.++ ..|
T Consensus        56 ~l~V~Gm~C~sCa~~Ie~aL~~~~GV~~v~Vn~at~k~~V~~d~~~~~~I~~aI~-~~G  113 (741)
T PRK11033         56 SWKVSGMDCPSCARKVENAVRQLAGVNQVQVLFATEKLVVDADNDIRAQVESAVQ-KAG  113 (741)
T ss_pred             EEEECCCCcHHHHHHHHHHHhcCCCeeeEEEEcCCCeEEEEecccchHHHHHHHH-hcc
Confidence            4778 89999999999999999999999999999999888753112256666666 566

>COG1888 Uncharacterized protein conserved in archaea [Function unknown]

Probab=95.48  E-value=0.038  Score=42.92  Aligned_cols=59  Identities=15%  Similarity=0.236  Sum_probs=47.1

Q ss_pred             HHHHHHhcCCCceEE-------EEEcCCCEEEEEeecCCHHHHHHHHHhhcCCceeeEEEcCCCCCC
Q 046486           15 KVKKVLCKFPQIQEQ-------SFDEKTNTVTIKVVSCSPEEIRDKLCCKGEGVIKTIEILKPDEKR   74 (202)
Q Consensus        15 KIkKaL~ki~GV~~V-------eVDlk~~tVtV~G~~vdpekL~~kL~~KtGk~iK~aEIVsp~kpk   74 (202)
                      .+.+.|++++||+.|       +++..+=+|||.|.++|-+.|.+.|+ ..|..|.+|.-+-.++.-
T Consensus        23 e~A~~lskl~gVegVNItv~eiD~et~~~~itIeG~~ldydei~~~iE-~~Gg~IHSiDevvaGk~i   88 (97)
T COG1888          23 ELALELSKLEGVEGVNITVTEIDVETENLKITIEGTNLDYDEIEEVIE-ELGGAIHSIDEVVAGKRI   88 (97)
T ss_pred             HHHHHHhhcCCcceEEEEEEEeeehhcceEEEEEcCCCCHHHHHHHHH-HcCCeeeehhhhhhccee
Confidence            456789999997654       33444667888998899999999999 888899999888777654

>PF02680 DUF211: Uncharacterized ArCR, COG1888; InterPro: IPR003831 This entry describes proteins of unknown function

Probab=95.40  E-value=0.035  Score=43.18  Aligned_cols=59  Identities=20%  Similarity=0.321  Sum_probs=44.0

Q ss_pred             HHHHHHHhcCCCceEEE-----EEcCCC--EEEEEeecCCHHHHHHHHHhhcCCceeeEEEcCCCCC
Q 046486           14 KKVKKVLCKFPQIQEQS-----FDEKTN--TVTIKVVSCSPEEIRDKLCCKGEGVIKTIEILKPDEK   73 (202)
Q Consensus        14 kKIkKaL~ki~GV~~Ve-----VDlk~~--tVtV~G~~vdpekL~~kL~~KtGk~iK~aEIVsp~kp   73 (202)
                      -.+.++|.+++||..|.     +|.++.  +|||.|+++|.+.|.++|+ +.|..|.++.-|..++.
T Consensus        20 ~e~A~~l~~~~gV~gVnitv~EvD~ete~lkitiEG~~id~d~i~~~Ie-~~Gg~IHSIDeVvaG~~   85 (95)
T PF02680_consen   20 VELAKALSELEGVDGVNITVVEVDVETENLKITIEGDDIDFDEIKEAIE-ELGGVIHSIDEVVAGKR   85 (95)
T ss_dssp             HHHHHHHHTSTTEEEEEEEEEEE-SSEEEEEEEEEESSE-HHHHHHHHH-HTT-EEEEEEEEEEESS
T ss_pred             HHHHHHHHhCCCcceEEEEEEEeeccccEEEEEEEeCCCCHHHHHHHHH-HcCCeEEeeeeeeecce
Confidence            35678999999988754     344433  4566787899999999999 88889999998877654

; PDB: 3BPD_I 2RAQ_F 2X3D_E.

>TIGR02052 MerP mercuric transport protein periplasmic component

Probab=89.40  E-value=4.7  Score=27.31  Aligned_cols=56  Identities=16%  Similarity=0.295  Sum_probs=41.9

Q ss_pred             EEE-cccChhhHHHHHHHHhcCCCceEEEEEcCCCEEEEEee--cCCHHHHHHHHHhhcC
Q 046486            3 LKV-DLSCSKCRKKVKKVLCKFPQIQEQSFDEKTNTVTIKVV--SCSPEEIRDKLCCKGE   59 (202)
Q Consensus         3 LKV-~M~C~gCakKIkKaL~ki~GV~~VeVDlk~~tVtV~G~--~vdpekL~~kL~~KtG   59 (202)
                      +.+ +++|..|...++..+....++....++.....+.+..+  ..+...+...+. ..|
T Consensus        27 ~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g   85 (92)
T TIGR02052        27 LEVPGMTCVACPITVETALQKVDGVSKAEVTFKTKLAVVTFDDEKTNVKALTEATT-DAG   85 (92)
T ss_pred             EEECCeEcHHHHHHHHHHHhcCCCEEEEEEEecCCEEEEEECCCCCCHHHHHHHHH-hcC
Confidence            456 78999999999999999999998999988887666521  235555555555 445

This model represents the periplasmic mercury (II) binding protein of the bacterial mercury detoxification system which passes mercuric ion to the MerT transporter for subsequent reduction to Hg(0) by the mercuric reductase MerA. MerP contains a distinctive GMTCXXC motif associated with metal binding. MerP is related to a larger family of metal binding proteins (pfam00403).

>PF13732 DUF4162: Domain of unknown function (DUF4162)

Probab=84.49  E-value=4.8  Score=28.53  Aligned_cols=49  Identities=16%  Similarity=0.236  Sum_probs=35.0

Q ss_pred             HHhcCCCceEEEEEcCC-CEEEEEeecCCHHHHHHHHHhhcCCceeeEEEcCC
Q 046486           19 VLCKFPQIQEQSFDEKT-NTVTIKVVSCSPEEIRDKLCCKGEGVIKTIEILKP   70 (202)
Q Consensus        19 aL~ki~GV~~VeVDlk~-~tVtV~G~~vdpekL~~kL~~KtGk~iK~aEIVsp   70 (202)
                      .|..++||.++..+... -++.|.. ..+...|++.|. ..|. |.+.++..|
T Consensus        25 ~l~~~~~v~~v~~~~~~~~~i~l~~-~~~~~~ll~~l~-~~g~-I~~f~~~~P   74 (84)
T PF13732_consen   25 ELEELPGVESVEQDGDGKLRIKLED-EETANELLQELI-EKGI-IRSFEEEEP   74 (84)
T ss_pred             HHhhCCCeEEEEEeCCcEEEEEECC-cccHHHHHHHHH-hCCC-eeEEEEcCC
Confidence            38889999999876433 3444444 577889999999 6575 777777655

>PF01206 TusA: Sulfurtransferase TusA; InterPro: IPR001455 SirA functions as a response regulator as part of a two-component system, where BarA is the sensor kinase

Probab=83.92  E-value=4.3  Score=28.12  Aligned_cols=49  Identities=24%  Similarity=0.260  Sum_probs=35.9

Q ss_pred             EEEE-cccChhhHHHHHHHHhcCCCceEEEEEcCCCEEEEEee-cCCHHHHHHHHHhhcCC
Q 046486            2 VLKV-DLSCSKCRKKVKKVLCKFPQIQEQSFDEKTNTVTIKVV-SCSPEEIRDKLCCKGEG   60 (202)
Q Consensus         2 vLKV-~M~C~gCakKIkKaL~ki~GV~~VeVDlk~~tVtV~G~-~vdpekL~~kL~~KtGk   60 (202)
                      +|.+ ++.|..-.-+++++|.+++         ..+.+.|..+ ....+.|...++ ..|.
T Consensus         2 ~lD~rg~~CP~Pll~~~~~l~~l~---------~G~~l~v~~d~~~~~~di~~~~~-~~g~   52 (70)
T PF01206_consen    2 TLDLRGLSCPMPLLKAKKALKELP---------PGEVLEVLVDDPAAVEDIPRWCE-ENGY   52 (70)
T ss_dssp             EEECSS-STTHHHHHHHHHHHTSG---------TT-EEEEEESSTTHHHHHHHHHH-HHTE
T ss_pred             EEeCCCCCCCHHHHHHHHHHHhcC---------CCCEEEEEECCccHHHHHHHHHH-HCCC
Confidence            5677 8999999999999999985         2456666664 345677888888 7783

This system increases the expression of virulence genes and decreases the expression of motility genes []. BarA phosphorylates SirA, thereby activating the protein. Phosphorylated SirA directly activates virulence expression by interacting with hilA and hilC promoters, while repressing the flagellar regulon indirectly by binding to the csrB promoter, which in turn affects flagellar gene expression. Orthologues of SirA from Salmonella spp. can be found throughout proteobacteria, such as GacA in Psuedomonas spp., VarA in Vibrio cholerae, ExpA in Erwinia carotovora, LetA in Legionella pneumophila, and UvrY in Escherichia coli []. A sensor kinase for SirA is present in each of these organisms as well; the sensor kinase is known as BarA in E. coli and Salmonella spp., but has different names in other genera. In different species, SirA/BarA orthologues are required for virulence gene expression, exoenzyme and antibiotic production, motility, and biofilm formation. The structure of SirA consists of an alpha/beta sandwich with a beta-alpha-beta-alpha-beta(2) fold, comprising a mixed four-stranded beta-sheet stacked against two alpha-helices, both of which are nearly parallel to the strands of the beta-sheet []. Several uncharacterised bacterial proteins (73 to 81 amino-acid residues in length) that contain a well-conserved region in their N-terminal region show structural similarity to the SirA protein, including the E. coli protein YedF (P0AA31 from SWISSPROT), and other members of the UPF0033 family.; GO: 0016783 sulfurtransferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 3LVJ_D 3LVK_B 1DCJ_A 3HZ7_A 1JDQ_A 1JE3_A 1PAV_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	202
1qup_A	222	Superoxide dismutase 1 copper chaperone; two domai	1e-05
2crl_A	98	Copper chaperone for superoxide dismutase; SOD1, f	2e-05
1jk9_B	249	CCS, copper chaperone for superoxide dismutase; pr	3e-04

>1qup_A Superoxide dismutase 1 copper chaperone; two domains, beta-alpha-beta-BETA-alpha-beta and beta barrel; 1.80A {Saccharomyces cerevisiae} SCOP: b.1.8.1 d.58.17.1 Length = 222

 Score = 43.1 bits (101), Expect = 1e-05
 Identities = 12/54 (22%), Positives = 23/54 (42%), Gaps = 1/54 (1%)

Query: 1  MVLKVDLSCSKCRKKVKKVLCKFPQIQEQSFDEKTNTVTIKVVSCSPEEIRDKL 54
              + + C  C   +K  L   P I   +FD +   ++++  S +P  I + L
Sbjct: 8  ATYAIPMHCENCVNDIKACLKNVPGINSLNFDIEQQIMSVE-SSVAPSTIINTL 60

>2crl_A Copper chaperone for superoxide dismutase; SOD1, familial ALS, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 98

 Score = 41.0 bits (96), Expect = 2e-05
 Identities = 10/54 (18%), Positives = 22/54 (40%), Gaps = 1/54 (1%)

Query: 1  MVLKVDLSCSKCRKKVKKVLCKFPQIQEQSFDEKTNTVTIKVVSCSPEEIRDKL 54
          +   V ++C  C   V+K L     +Q+     +   V +   +   +E++  L
Sbjct: 21 LEFAVQMTCQSCVDAVRKSLQGVAGVQDVEVHLEDQMVLVH-TTLPSQEVQALL 73

>1jk9_B CCS, copper chaperone for superoxide dismutase; protein-protein complex, heterodimer, metallochaperone, amyotrophic lateral sclerosis; 2.90A {Saccharomyces cerevisiae} SCOP: b.1.8.1 d.58.17.1 Length = 249

 Score = 39.4 bits (91), Expect = 3e-04
 Identities = 12/54 (22%), Positives = 23/54 (42%), Gaps = 1/54 (1%)

Query: 1  MVLKVDLSCSKCRKKVKKVLCKFPQIQEQSFDEKTNTVTIKVVSCSPEEIRDKL 54
              + + C  C   +K  L   P I   +FD +   ++++  S +P  I + L
Sbjct: 9  ATYAIPMHCENCVNDIKACLKNVPGINSLNFDIEQQIMSVE-SSVAPSTIINTL 61

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	202
3iwl_A	68	Copper transport protein ATOX1; beta-alpha-beta-BE	99.48
1cc8_A	73	Protein (metallochaperone ATX1); copper transport,	99.37
4a4j_A	69	Pacszia, cation-transporting ATPase PACS; hydrolas	99.36
3dxs_X	74	Copper-transporting ATPase RAN1; CXXC motif, ferre	99.33
2crl_A	98	Copper chaperone for superoxide dismutase; SOD1, f	99.28
3fry_A	73	Probable copper-exporting P-type ATPase A; transpo	99.25
2roe_A	66	Heavy metal binding protein; NMR {Thermus thermoph	99.23
1cpz_A	68	Protein (COPZ); copper chaperone, metal transport,	99.2
2kt2_A	69	Mercuric reductase; nmera, MERA, HMA domain, mercu	99.18
2xmm_A	64	SSR2857 protein, ATX1; metal transport, copper hom	99.18
2xmw_A	71	PACS-N, cation-transporting ATPase PACS; hydrolase	99.15
1aw0_A	72	Menkes copper-transporting ATPase; copper-binding	99.15
3cjk_B	75	Copper-transporting ATPase 1; HAH1, ATP7B, menkes	99.14
1osd_A	72	MERP, hypothetical protein MERP; mercury resistanc	99.13
2l3m_A	71	Copper-ION-binding protein; structural genomics, c	99.12
2g9o_A	90	Copper-transporting ATPase 1; menkes disease, solu	99.11
1yg0_A	66	COP associated protein; open-faced beta-sandwich,	99.09
1q8l_A	84	Copper-transporting ATPase 1; metal binding protei	99.09
1fvq_A	72	Copper-transporting ATPase; APO-CCC2A, hydrolase;	99.08
1mwy_A	73	ZNTA; open-faced beta-sandwich fold, beta-alpha-be	99.08
2qif_A	69	Copper chaperone COPZ; tetranuclear Cu(I) cluster;	99.08
1kvi_A	79	Copper-transporting ATPase 1; menkes, Cu-protein,	99.07
1yjr_A	75	Copper-transporting ATPase 1; metallochaperone, pr	99.03
2k2p_A	85	Uncharacterized protein ATU1203; putative metal-bi	99.02
2kyz_A	67	Heavy metal binding protein; structural genomics,	99.02
1opz_A	76	Potential copper-transporting ATPase; mutation, fo	99.01
1y3j_A	77	Copper-transporting ATPase 1; ferrodoxin-like fold	99.01
2ldi_A	71	Zinc-transporting ATPase; metal homeostasis, metal	98.98
2ew9_A	149	Copper-transporting ATPase 2; copper trafficking,	98.96
1qup_A	222	Superoxide dismutase 1 copper chaperone; two domai	98.95
1jww_A	80	Potential copper-transporting ATPase; beta-alpha-b	98.94
1p6t_A	151	Potential copper-transporting ATPase; COPA, P-type	98.9
2kkh_A	95	Putative heavy metal transporter; zinc transport,	98.88
2ofg_X	111	Zinc-transporting ATPase; ferredoxin-like fold, be	98.85
1jk9_B	249	CCS, copper chaperone for superoxide dismutase; pr	98.84
2rop_A	202	Copper-transporting ATPase 2; wilson protein, mobi	98.79
2aj0_A	71	Probable cadmium-transporting ATPase; ferrodoxin-l	98.72
2ew9_A	149	Copper-transporting ATPase 2; copper trafficking,	98.71
2rop_A	202	Copper-transporting ATPase 2; wilson protein, mobi	98.44
1p6t_A	151	Potential copper-transporting ATPase; COPA, P-type	98.28
3j09_A	723	COPA, copper-exporting P-type ATPase A; copper tra	98.16
2x3d_A	96	SSO6206; unknown function; 2.70A {Sulfolobus solfa	95.38
3bpd_A	100	Uncharacterized protein; heptamer, Mg+2 ION, PSI-2	95.27
2raq_A	97	Conserved protein MTH889; alpha-beta protein, stru	95.15
2jsx_A	95	Protein NAPD; TAT, proofreading, cytoplasm, chaper	88.84

>3iwl_A Copper transport protein ATOX1; beta-alpha-beta-BETA-alpha-beta, cisplatin, platinum, chaperone, ION transport, metal-binding, metal transport; HET: TCE; 1.60A {Homo sapiens} SCOP: d.58.17.1 PDB: 1fe4_A* 1fee_A* 1tl4_A 1tl5_A 2k1r_B 1fe0_A* 3iwx_A 3cjk_A

Probab=99.48  E-value=1.2e-13  Score=94.14  Aligned_cols=63  Identities=27%  Similarity=0.406  Sum_probs=59.3

Q ss_pred             EEEEcccChhhHHHHHHHHhcCCCceEEEEEcCCCEEEEEeecCCHHHHHHHHHhhcCCceeeEEEcCC
Q 046486            2 VLKVDLSCSKCRKKVKKVLCKFPQIQEQSFDEKTNTVTIKVVSCSPEEIRDKLCCKGEGVIKTIEILKP   70 (202)
Q Consensus         2 vLKV~M~C~gCakKIkKaL~ki~GV~~VeVDlk~~tVtV~G~~vdpekL~~kL~~KtGk~iK~aEIVsp   70 (202)
                      +|+|+|+|.+|+++|+++|.+++|| ++++|+.+++++|.+ .++++.|+++|+ ++|   +.++++++
T Consensus         5 ~~~vgm~C~~C~~~i~~~l~~~~gV-~v~v~~~~~~~~v~~-~~~~~~i~~~i~-~~G---y~~~~~~~   67 (68)
T 3iwl_A            5 EFSVDMTCGGCAEAVSRVLNKLGGV-KYDIDLPNKKVCIES-EHSMDTLLATLK-KTG---KTVSYLGL   67 (68)
T ss_dssp             EEEECCCSHHHHHHHHHHHHHHCSE-EEEEETTTTEEEEEE-SSCHHHHHHHHH-TTC---SCEEEEEC
T ss_pred             EEEECcCcHHHHHHHHHHHHcCCCe-EEEEEcCCCEEEEEe-cCCHHHHHHHHH-HcC---CceEecCC
Confidence            5788999999999999999999999 999999999999999 799999999999 889   88888875

>1cc8_A Protein (metallochaperone ATX1); copper transport, mercury coordination, metal transport; 1.02A {Saccharomyces cerevisiae} SCOP: d.58.17.1 PDB: 1cc7_A 1fd8_A 1fes_A 2ggp_A 3k7r_A

Probab=99.37  E-value=2e-12  Score=88.22  Aligned_cols=63  Identities=24%  Similarity=0.340  Sum_probs=57.5

Q ss_pred             EEEEcccChhhHHHHHHHHhcCC-CceEEEEEcCCCEEEEEeecCCHHHHHHHHHhhcCCceeeEEEcC
Q 046486            2 VLKVDLSCSKCRKKVKKVLCKFP-QIQEQSFDEKTNTVTIKVVSCSPEEIRDKLCCKGEGVIKTIEILK   69 (202)
Q Consensus         2 vLKV~M~C~gCakKIkKaL~ki~-GV~~VeVDlk~~tVtV~G~~vdpekL~~kL~~KtGk~iK~aEIVs   69 (202)
                      +|+|+|+|.+|+++|+++|.+++ ||.+++||+.+++++|.+ ..+.+.|.++|+ ++|   +.+++++
T Consensus         8 ~~~v~m~C~~C~~~ie~~l~~~~~GV~~~~v~~~~~~~~v~~-~~~~~~i~~~i~-~~G---y~~~~~~   71 (73)
T 1cc8_A            8 QFNVVMTCSGCSGAVNKVLTKLEPDVSKIDISLEKQLVDVYT-TLPYDFILEKIK-KTG---KEVRSGK   71 (73)
T ss_dssp             EEEECCCSHHHHHHHHHHHHTTTTSEEEEEEETTTTEEEEEE-SSCHHHHHHHHH-TTS---SCEEEEE
T ss_pred             EEEEeeECHHHHHHHHHHHHhCCCCceEEEEECCCCEEEEEE-eCCHHHHHHHHH-HhC---CCceeee
Confidence            57889999999999999999999 999999999999999998 789999999999 889   5666553

>4a4j_A Pacszia, cation-transporting ATPase PACS; hydrolase, copper homeostasis, zinc homeostasis, ATX1, metal-transporting atpases; 1.25A {Synechocystis} PDB: 4a48_A 2gcf_A 2xmw_A

Probab=99.36  E-value=3.5e-12  Score=85.47  Aligned_cols=64  Identities=14%  Similarity=0.404  Sum_probs=57.6

Q ss_pred             CEEEE-cccChhhHHHHHHHHhcCCCceEEEEEcCCCEEEEEee-cCCHHHHHHHHHhhcCCceeeEEEc
Q 046486            1 MVLKV-DLSCSKCRKKVKKVLCKFPQIQEQSFDEKTNTVTIKVV-SCSPEEIRDKLCCKGEGVIKTIEIL   68 (202)
Q Consensus         1 mvLKV-~M~C~gCakKIkKaL~ki~GV~~VeVDlk~~tVtV~G~-~vdpekL~~kL~~KtGk~iK~aEIV   68 (202)
                      ++|+| +|+|.+|+++|+++|.+++||.++.||+.+++++|... ..+++.|.++|+ ++|   +.++++
T Consensus         4 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~i~~~i~-~~G---y~~~~~   69 (69)
T 4a4j_A            4 INLQLEGMDCTSCASSIERAIAKVPGVQSCQVNFALEQAVVSYHGETTPQILTDAVE-RAG---YHARVL   69 (69)
T ss_dssp             EEEEEESCCSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEECTTCCHHHHHHHHH-HTT---CEEEEC
T ss_pred             EEEEECCeecHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCHHHHHHHHH-HcC---CceEeC
Confidence            36889 89999999999999999999999999999999999832 689999999999 889   676654

>3dxs_X Copper-transporting ATPase RAN1; CXXC motif, ferredoxin-like fold, ATP- binding, ethylene signaling pathway, hydrolase, ION transport; 1.70A {Arabidopsis thaliana} SCOP: d.58.17.0

Probab=99.33  E-value=4.4e-12  Score=86.31  Aligned_cols=65  Identities=18%  Similarity=0.307  Sum_probs=58.8

Q ss_pred             EEEE-cccChhhHHHHHHHHhcCCCceEEEEEcCCCEEEEEee--cCCHHHHHHHHHhhcCCceeeEEEcCC
Q 046486            2 VLKV-DLSCSKCRKKVKKVLCKFPQIQEQSFDEKTNTVTIKVV--SCSPEEIRDKLCCKGEGVIKTIEILKP   70 (202)
Q Consensus         2 vLKV-~M~C~gCakKIkKaL~ki~GV~~VeVDlk~~tVtV~G~--~vdpekL~~kL~~KtGk~iK~aEIVsp   70 (202)
                      +|+| +|+|.+|+.+|+++|.+++||.++.||+.+++++|..+  .++.+.|+++|+ ++|   +.+++++.
T Consensus         5 ~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~-~~G---y~~~~~~~   72 (74)
T 3dxs_X            5 QVGVTGMTCAACSNSVEAALMNVNGVFKASVALLQNRADVVFDPNLVKEEDIKEEIE-DAG---FEAEILAE   72 (74)
T ss_dssp             EEEEECCCSHHHHHHHHHHHHTSTTEEEEEEEGGGTEEEEEECTTTCCHHHHHHHHH-HHT---CEEEEEEE
T ss_pred             EEEECCcCCHHHHHHHHHHHhcCCCEEEEEEEecCCEEEEEECCCCCCHHHHHHHHH-HCC---CceEEccC
Confidence            5889 89999999999999999999999999999999999864  368999999999 889   77777753

>2crl_A Copper chaperone for superoxide dismutase; SOD1, familial ALS, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.28  E-value=1.3e-11  Score=90.78  Aligned_cols=67  Identities=15%  Similarity=0.263  Sum_probs=61.4

Q ss_pred             EEEEcccChhhHHHHHHHHhcCCCceEEEEEcCCCEEEEEeecCCHHHHHHHHHhhcCCceeeEEEcCCCCC
Q 046486            2 VLKVDLSCSKCRKKVKKVLCKFPQIQEQSFDEKTNTVTIKVVSCSPEEIRDKLCCKGEGVIKTIEILKPDEK   73 (202)
Q Consensus         2 vLKV~M~C~gCakKIkKaL~ki~GV~~VeVDlk~~tVtV~G~~vdpekL~~kL~~KtGk~iK~aEIVsp~kp   73 (202)
                      +|+|+|+|.+|+++|+++|.+++||.++.||+.+++++|.+ .++.+.|+++|+ ++|   +.++++.....
T Consensus        22 ~l~V~m~C~~C~~~Ie~aL~~l~GV~~v~vdl~~~~~~V~~-~~~~~~i~~~i~-~~G---y~~~~~~~~~~   88 (98)
T 2crl_A           22 EFAVQMTCQSCVDAVRKSLQGVAGVQDVEVHLEDQMVLVHT-TLPSQEVQALLE-GTG---RQAVLKGMGSG   88 (98)
T ss_dssp             EEEECCCSHHHHHHHHHTTTTCTTCCEEEEETTTTEEEEEE-SSCHHHHHHHHH-TTT---SCEEEEESCCC
T ss_pred             EEEEeeECHHHHHHHHHHHHcCCCceEEEEECCCCEEEEEE-eCCHHHHHHHHH-HhC---CceEEccCCCC
Confidence            68889999999999999999999999999999999999998 689999999999 889   78888876543

>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}

Probab=99.25  E-value=1.5e-11  Score=84.48  Aligned_cols=62  Identities=19%  Similarity=0.274  Sum_probs=57.6

Q ss_pred             EEEE-cccChhhHHHHHHHHhcCCCceEEEEEcCCCEEEEEeecCCHHHHHHHHHhhcCCceeeEEEcCC
Q 046486            2 VLKV-DLSCSKCRKKVKKVLCKFPQIQEQSFDEKTNTVTIKVVSCSPEEIRDKLCCKGEGVIKTIEILKP   70 (202)
Q Consensus         2 vLKV-~M~C~gCakKIkKaL~ki~GV~~VeVDlk~~tVtV~G~~vdpekL~~kL~~KtGk~iK~aEIVsp   70 (202)
                      +|+| +|+|.+|+.+|+++|.+ +||.++.||+.+++++|.. . +.+.|+++|+ ++|   +.++++++
T Consensus         8 ~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~~~~~~~v~~-~-~~~~i~~~i~-~~G---y~~~~~~~   70 (73)
T 3fry_A            8 VLELSGLSCHHCVARVKKALEE-AGAKVEKVDLNEAVVAGNK-E-DVDKYIKAVE-AAG---YQAKLRSS   70 (73)
T ss_dssp             EEEEESSBCGGGHHHHHHHHHH-TTCEEEEECSSEEEEEEEG-G-GHHHHHHHHH-HTT---CEEEECCS
T ss_pred             EEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEccCCEEEEEE-C-CHHHHHHHHH-HcC---CceEecCc
Confidence            6889 89999999999999999 9999999999999999999 5 9999999999 889   78888764

>2roe_A Heavy metal binding protein; NMR {Thermus thermophilus} PDB: 2rog_A

Probab=99.23  E-value=2.4e-11  Score=80.26  Aligned_cols=63  Identities=21%  Similarity=0.411  Sum_probs=56.3

Q ss_pred             CEEEE-cccChhhHHHHHHHHhcCCCceEEEEEcCCCEEEEEeecCCHHHHHHHHHhhcCCceeeEEEc
Q 046486            1 MVLKV-DLSCSKCRKKVKKVLCKFPQIQEQSFDEKTNTVTIKVVSCSPEEIRDKLCCKGEGVIKTIEIL   68 (202)
Q Consensus         1 mvLKV-~M~C~gCakKIkKaL~ki~GV~~VeVDlk~~tVtV~G~~vdpekL~~kL~~KtGk~iK~aEIV   68 (202)
                      ++|+| +|+|.+|+.+|+++|.+++||.++.+|+.+++++|.+ ..+.+.|.++|+ ++|   +.++.+
T Consensus         2 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~-~~~~~~i~~~i~-~~G---y~~~~~   65 (66)
T 2roe_A            2 LKLKVEGMTCNHCVMAVTKALKKVPGVEKVEVSLEKGEALVEG-TADPKALVQAVE-EEG---YKAEVL   65 (66)
T ss_dssp             BCEEEECCCSHHHHHHHHHHHHTSTTCCCEEECSSSCBEEECS-CCCHHHHHHHHH-TTT---CEEEEC
T ss_pred             EEEEECCeEcHHHHHHHHHHHHcCCCeEEEEEEeCCCEEEECC-CCCHHHHHHHHH-HcC---CCcEec
Confidence            35889 8999999999999999999999999999999999965 689999999999 889   555544

>1cpz_A Protein (COPZ); copper chaperone, metal transport, gene regulation; NMR {Enterococcus hirae} SCOP: d.58.17.1

Probab=99.20  E-value=1.1e-10  Score=75.87  Aligned_cols=63  Identities=14%  Similarity=0.316  Sum_probs=55.8

Q ss_pred             CEEEE-cccChhhHHHHHHHHhcCCCceEEEEEcCCCEEEEEee--cCCHHHHHHHHHhhcCCceeeEEE
Q 046486            1 MVLKV-DLSCSKCRKKVKKVLCKFPQIQEQSFDEKTNTVTIKVV--SCSPEEIRDKLCCKGEGVIKTIEI   67 (202)
Q Consensus         1 mvLKV-~M~C~gCakKIkKaL~ki~GV~~VeVDlk~~tVtV~G~--~vdpekL~~kL~~KtGk~iK~aEI   67 (202)
                      ++|+| +|+|.+|+.+|+++|.+++||.++.+|+.+++++|..+  ..+.+.|.+.|. ++|   +.+++
T Consensus         2 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~-~~G---~~~~~   67 (68)
T 1cpz_A            2 QEFSVKGMSCNHCVARIEEAVGRISGVKKVKVQLKKEKAVVKFDEANVQATEICQAIN-ELG---YQAEV   67 (68)
T ss_dssp             CEEEESCCCSSSHHHHHHHHHHTSTTEEEEEEETTTTEEEEEECTTTCCHHHHHHHHH-TTS---SCEEE
T ss_pred             EEEEECCeeCHHHHHHHHHHHHcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHH-HcC---CCccc
Confidence            47899 89999999999999999999999999999999999874  367899999999 888   55554

>2kt2_A Mercuric reductase; nmera, MERA, HMA domain, mercuric resist metal-binding, oxidoreductase; NMR {Pseudomonas aeruginosa} PDB: 2kt3_A

Probab=99.18  E-value=1e-10  Score=77.02  Aligned_cols=64  Identities=22%  Similarity=0.398  Sum_probs=56.0

Q ss_pred             CEEEE-cccChhhHHHHHHHHhcCCCceEEEEEcCCCEEEEEee-cCCHHHHHHHHHhhcCCceeeEEEc
Q 046486            1 MVLKV-DLSCSKCRKKVKKVLCKFPQIQEQSFDEKTNTVTIKVV-SCSPEEIRDKLCCKGEGVIKTIEIL   68 (202)
Q Consensus         1 mvLKV-~M~C~gCakKIkKaL~ki~GV~~VeVDlk~~tVtV~G~-~vdpekL~~kL~~KtGk~iK~aEIV   68 (202)
                      ++|+| +|+|.+|+.+|+++|.+++||.++.+|+.+++++|..+ ..+.+.|.++|. ++|   +.+.+.
T Consensus         2 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~i~~~i~-~~G---y~~~~~   67 (69)
T 2kt2_A            2 THLKITGMTCDSCAAHVKEALEKVPGVQSALVSYPKGTAQLAIVPGTSPDALTAAVA-GLG---YKATLA   67 (69)
T ss_dssp             CCEEEESSCSTHHHHHHHHHHHHSTTEEEEEEETTTTEEEEEECTTSCHHHHHHHHH-TTT---SEEECC
T ss_pred             EEEEECCcccHHHHHHHHHHHHcCCCeeEEEEEccCCEEEEEECCCCCHHHHHHHHH-HCC---CceEeC
Confidence            46889 99999999999999999999999999999999999864 367899999999 888   555543

>2xmm_A SSR2857 protein, ATX1; metal transport, copper homeostasis, chaperone, P-type atpas; 1.65A {Synechocystis SP} PDB: 2xmv_A 1sb6_A 2xmj_A 2xmk_A 2xmt_A 2xmu_A

Probab=99.18  E-value=3e-11  Score=77.80  Aligned_cols=56  Identities=21%  Similarity=0.359  Sum_probs=52.8

Q ss_pred             EEEE-cccChhhHHHHHHHHhcCCCceEEEEEcCCCEEEEEeecCCHHHHHHHHHhhcC
Q 046486            2 VLKV-DLSCSKCRKKVKKVLCKFPQIQEQSFDEKTNTVTIKVVSCSPEEIRDKLCCKGE   59 (202)
Q Consensus         2 vLKV-~M~C~gCakKIkKaL~ki~GV~~VeVDlk~~tVtV~G~~vdpekL~~kL~~KtG   59 (202)
                      +|+| +|+|.+|+.+|+++|.+++||.++.+|+.+++++|.+ ..+.+.|.++|. ++|
T Consensus         4 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~-~~~~~~i~~~i~-~~G   60 (64)
T 2xmm_A            4 QLTVPTIACEACAEAVTKAVQNEDAQATVQVDLTSKKVTITS-ALGEEQLRTAIA-SAG   60 (64)
T ss_dssp             EEECTTCCSHHHHHHHHHHHHHHCTTCEEEECTTTCEEEEEC-SSCHHHHHHHHH-HTT
T ss_pred             EEEECCcCcHHHHHHHHHHHhcCCCcEEEEEEecCCEEEEEe-cCCHHHHHHHHH-HcC
Confidence            5788 8999999999999999999999999999999999997 688999999999 778

>2xmw_A PACS-N, cation-transporting ATPase PACS; hydrolase, Cu(I)-binding, trafficking; 1.80A {Synechocystis SP} PDB: 2gcf_A

Probab=99.15  E-value=2.2e-10  Score=75.03  Aligned_cols=57  Identities=14%  Similarity=0.404  Sum_probs=51.0

Q ss_pred             EEEE-cccChhhHHHHHHHHhcCCCceEEEEEcCCCEEEEEee-cCCHHHHHHHHHhhcC
Q 046486            2 VLKV-DLSCSKCRKKVKKVLCKFPQIQEQSFDEKTNTVTIKVV-SCSPEEIRDKLCCKGE   59 (202)
Q Consensus         2 vLKV-~M~C~gCakKIkKaL~ki~GV~~VeVDlk~~tVtV~G~-~vdpekL~~kL~~KtG   59 (202)
                      +|+| +|+|.+|+.+|+++|.+++||.++.+|+.+++++|..+ .++.+.|.++|. ++|
T Consensus         6 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~i~~~i~-~~G   64 (71)
T 2xmw_A            6 NLQLEGMRCAACASSIERAIAKVPGVQSCQVNFALEQAVVSYHGETTPQILTDAVE-RAG   64 (71)
T ss_dssp             EEEEECCCSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEEC---CHHHHHHHHH-HHT
T ss_pred             EEEECCcccHHHHHHHHHHHhcCCCeEEEEEEccCCEEEEEECCCCCHHHHHHHHH-HcC
Confidence            5888 89999999999999999999999999999999999864 367888999998 778

>1aw0_A Menkes copper-transporting ATPase; copper-binding domain, hydrolase; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 2aw0_A

Probab=99.15  E-value=1.7e-10  Score=76.09  Aligned_cols=63  Identities=17%  Similarity=0.351  Sum_probs=55.6

Q ss_pred             EEEE-cccChhhHHHHHHHHhcCCCceEEEEEcCCCEEEEEee--cCCHHHHHHHHHhhcCCceeeEEEc
Q 046486            2 VLKV-DLSCSKCRKKVKKVLCKFPQIQEQSFDEKTNTVTIKVV--SCSPEEIRDKLCCKGEGVIKTIEIL   68 (202)
Q Consensus         2 vLKV-~M~C~gCakKIkKaL~ki~GV~~VeVDlk~~tVtV~G~--~vdpekL~~kL~~KtGk~iK~aEIV   68 (202)
                      +|+| +|+|.+|+.+|+++|.+++||.++.+|+.+++++|..+  .++.+.|.++|. ++|   +.+.++
T Consensus         6 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~-~~G---~~~~~~   71 (72)
T 1aw0_A            6 VINIDGMTCNSCVQSIEGVISKKPGVKSIRVSLANSNGTVEYDPLLTSPETLRGAIE-DMG---FDATLS   71 (72)
T ss_dssp             EEEEECCCHHHHHHHHHHHHHTSTTCCCEEEETTTTEEEEEECTTTCCHHHHHHHHH-HHT---CEEEEC
T ss_pred             EEEECCeecHHHHHHHHHHHhcCCCeEEEEEEccCCEEEEEECCCcCCHHHHHHHHH-HCC---CCcEeC
Confidence            6889 89999999999999999999999999999999999874  267889999999 778   555553

>3cjk_B Copper-transporting ATPase 1; HAH1, ATP7B, menkes disease, metal homeostasis, chaperone, ION transport, metal- binding, alternative splicing; 1.80A {Homo sapiens} PDB: 2k1r_A

Probab=99.14  E-value=2.8e-10  Score=76.16  Aligned_cols=64  Identities=13%  Similarity=0.237  Sum_probs=55.9

Q ss_pred             CEEEE-cccChhhHHHHHHHHhcCCCceEEEEEcCCCEEEEEee--cCCHHHHHHHHHhhcCCceeeEEEc
Q 046486            1 MVLKV-DLSCSKCRKKVKKVLCKFPQIQEQSFDEKTNTVTIKVV--SCSPEEIRDKLCCKGEGVIKTIEIL   68 (202)
Q Consensus         1 mvLKV-~M~C~gCakKIkKaL~ki~GV~~VeVDlk~~tVtV~G~--~vdpekL~~kL~~KtGk~iK~aEIV   68 (202)
                      +.|+| +|+|.+|+.+|+++|.+++||.++.+|+.+++++|..+  .++.+.|.++|. ++|   +.++++
T Consensus         4 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~-~~G---y~~~~~   70 (75)
T 3cjk_B            4 VTISVEGMTCNSCVWTIEQQIGKVNGVHHIKVSLEEKNATIIYDPKLQTPKTLQEAID-DMG---FDAVIH   70 (75)
T ss_dssp             EEEEECCCCSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEECTTTCCHHHHHHHHH-HTT---CCEEEE
T ss_pred             EEEEECCccCHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHH-HcC---CceEee
Confidence            36889 99999999999999999999999999999999999864  357899999999 888   555554

>1osd_A MERP, hypothetical protein MERP; mercury resistance, metal binding protein, perisplasm, structural genomics; 2.00A {Cupriavidus metallidurans} SCOP: d.58.17.1 PDB: 1afi_A 1afj_A 2hqi_A

Probab=99.13  E-value=2.2e-10  Score=75.47  Aligned_cols=57  Identities=19%  Similarity=0.338  Sum_probs=52.4

Q ss_pred             EEEE-cccChhhHHHHHHHHhcCCCceEEEEEcCCCEEEEEee--cCCHHHHHHHHHhhcC
Q 046486            2 VLKV-DLSCSKCRKKVKKVLCKFPQIQEQSFDEKTNTVTIKVV--SCSPEEIRDKLCCKGE   59 (202)
Q Consensus         2 vLKV-~M~C~gCakKIkKaL~ki~GV~~VeVDlk~~tVtV~G~--~vdpekL~~kL~~KtG   59 (202)
                      +|+| +|+|.+|+.+|+++|.+++||.++.+|+.+++++|..+  ..+.+.|.++|. ++|
T Consensus         6 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~-~~G   65 (72)
T 1osd_A            6 TLSVPGMTCSACPITVKKAISKVEGVSKVDVTFETRQAVVTFDDAKTSVQKLTKATA-DAG   65 (72)
T ss_dssp             EEECTTCCSTTHHHHHHHHHHTSTTEEEEEEETTTTEEEEEEETTTCCHHHHHHHHH-HTT
T ss_pred             EEEECCeEcHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHH-hcC
Confidence            5888 89999999999999999999999999999999999864  367889999999 788

>2l3m_A Copper-ION-binding protein; structural genomics, center for structural genomics of infec diseases, csgid, metal binding protein; NMR {Bacillus anthracis}

Probab=99.12  E-value=3.6e-10  Score=74.45  Aligned_cols=57  Identities=14%  Similarity=0.312  Sum_probs=52.3

Q ss_pred             EEEE-cccChhhHHHHHHHHhcCCCceEEEEEcCCCEEEEEee--cCCHHHHHHHHHhhcC
Q 046486            2 VLKV-DLSCSKCRKKVKKVLCKFPQIQEQSFDEKTNTVTIKVV--SCSPEEIRDKLCCKGE   59 (202)
Q Consensus         2 vLKV-~M~C~gCakKIkKaL~ki~GV~~VeVDlk~~tVtV~G~--~vdpekL~~kL~~KtG   59 (202)
                      +|+| +|+|.+|+.+|+++|.+++||.++.+|+.+++++|..+  .++.+.|.++|. ++|
T Consensus         8 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~-~~G   67 (71)
T 2l3m_A            8 TLQVEGMSCGHCVNAIESSVKELNGVEQVKVQLAEGTVEVTIDSSVVTLKDIVAVIE-DQG   67 (71)
T ss_dssp             EEEEECCCSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEEETTTSCHHHHHHHHH-HTT
T ss_pred             EEEECCccCHHHHHHHHHHHHcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHH-HcC
Confidence            5889 89999999999999999999999999999999999864  467899999999 778

>2g9o_A Copper-transporting ATPase 1; menkes disease, solution structure, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens} PDB: 2ga7_A

Probab=99.11  E-value=2.4e-10  Score=81.64  Aligned_cols=67  Identities=12%  Similarity=0.256  Sum_probs=58.3

Q ss_pred             CEEEE-cccChhhHHHHHHHHhcCCCceEEEEEcCCCEEEEEee--cCCHHHHHHHHHhhc---CCceeeEEEcCCC
Q 046486            1 MVLKV-DLSCSKCRKKVKKVLCKFPQIQEQSFDEKTNTVTIKVV--SCSPEEIRDKLCCKG---EGVIKTIEILKPD   71 (202)
Q Consensus         1 mvLKV-~M~C~gCakKIkKaL~ki~GV~~VeVDlk~~tVtV~G~--~vdpekL~~kL~~Kt---Gk~iK~aEIVsp~   71 (202)
                      ++|+| +|+|.+|+.+|+++|.+++||.++.||+.+++++|..+  .++.+.|.++|. ++   |   +.+.++++.
T Consensus         5 ~~l~v~Gm~C~~C~~~Ie~~L~~~~GV~~v~v~l~~~~~~V~~~~~~~~~~~i~~~i~-~~g~Gg---y~~~~~~~~   77 (90)
T 2g9o_A            5 ATFIIDGMHCKSCVSNIESTLSALQYVSSIVVSLENRSAIVVYNASSVTPESLRKAIE-AVSPGL---YRVSITSEV   77 (90)
T ss_dssp             EEEEEESCCHHHHHHHHHHHHTTCTTEEEEEEETTTTEEEEEECCSSCCTHHHHHHHH-TTSTTT---CEEECCCCC
T ss_pred             EEEEECCcCCHHHHHHHHHHHHcCCCeeEEEEEccCCEEEEEECCCCCCHHHHHHHHH-hccCCC---eEEEEeCCC
Confidence            36888 99999999999999999999999999999999999864  357889999999 77   6   677777654

>1yg0_A COP associated protein; open-faced beta-sandwich, missing C-terminal beta-sheet, Met transport; NMR {Helicobacter pylori}

Probab=99.09  E-value=2.6e-10  Score=73.70  Aligned_cols=57  Identities=14%  Similarity=0.381  Sum_probs=51.4

Q ss_pred             EEEE-cccChhhHHHHHHHHhcCCCceEEEEEcCCCEEEEEee-cCCHHHHHHHHHhhcC
Q 046486            2 VLKV-DLSCSKCRKKVKKVLCKFPQIQEQSFDEKTNTVTIKVV-SCSPEEIRDKLCCKGE   59 (202)
Q Consensus         2 vLKV-~M~C~gCakKIkKaL~ki~GV~~VeVDlk~~tVtV~G~-~vdpekL~~kL~~KtG   59 (202)
                      +|+| +|+|.+|+.+|+++|.+++||.++.+|+.+++++|..+ ..+.+.|.++|. ++|
T Consensus         4 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~i~~~i~-~~G   62 (66)
T 1yg0_A            4 TFQVPSITCNHCVDKIEKFVGEIEGVSFIDVSVEKKSVVVEFDAPATQDLIKEALL-DAG   62 (66)
T ss_dssp             EECCTTCSCSHHHHHHHHHHTTSSSEEEEEEETTTTEEEEEECTTCCHHHHHHHHH-HHT
T ss_pred             EEEECCcccHHHHHHHHHHHhcCCCceEEEEEcCCCEEEEEECCCCCHHHHHHHHH-HcC
Confidence            5777 89999999999999999999999999999999999864 357889999998 777

>1q8l_A Copper-transporting ATPase 1; metal binding protein; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 1s6o_A 1s6u_A

Probab=99.09  E-value=2.7e-10  Score=79.24  Aligned_cols=65  Identities=18%  Similarity=0.259  Sum_probs=57.3

Q ss_pred             EEEE-cccChhhHHHHHHHHhcCCCceEEEEEcCCCEEEEEee--cCCHHHHHHHHHhhcCCceeeEEEcCC
Q 046486            2 VLKV-DLSCSKCRKKVKKVLCKFPQIQEQSFDEKTNTVTIKVV--SCSPEEIRDKLCCKGEGVIKTIEILKP   70 (202)
Q Consensus         2 vLKV-~M~C~gCakKIkKaL~ki~GV~~VeVDlk~~tVtV~G~--~vdpekL~~kL~~KtGk~iK~aEIVsp   70 (202)
                      .|+| +|+|.+|+.+|+++|.+++||.++.+|+.+++++|..+  .++.+.|.++|. ++|   +.++++..
T Consensus        12 ~~~v~gm~C~~C~~~ie~~l~~~~GV~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~-~~G---y~~~~~~~   79 (84)
T 1q8l_A           12 KMKVEGMTCHSCTSTIEGKIGKLQGVQRIKVSLDNQEATIVYQPHLISVEEMKKQIE-AMG---FPAFVKKQ   79 (84)
T ss_dssp             EEEECCTTTCSSCHHHHHHHHTCTTEEEEEECSTTTEEEEEECTTTCCHHHHHHHHH-HTT---CCEECSCC
T ss_pred             EEEECCcccHHHHHHHHHHHHcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHH-HcC---CceEecCC
Confidence            6889 99999999999999999999999999999999999874  357889999999 889   66666554

>1fvq_A Copper-transporting ATPase; APO-CCC2A, hydrolase; NMR {Saccharomyces cerevisiae} SCOP: d.58.17.1 PDB: 1fvs_A 2ggp_B

Probab=99.08  E-value=3.2e-10  Score=74.71  Aligned_cols=64  Identities=19%  Similarity=0.359  Sum_probs=56.0

Q ss_pred             EEEE-cccChhhHHHHHHHHhcCCCceEEEEEcCCCEEEEEee-cCCHHHHHHHHHhhcCCceeeEEEcC
Q 046486            2 VLKV-DLSCSKCRKKVKKVLCKFPQIQEQSFDEKTNTVTIKVV-SCSPEEIRDKLCCKGEGVIKTIEILK   69 (202)
Q Consensus         2 vLKV-~M~C~gCakKIkKaL~ki~GV~~VeVDlk~~tVtV~G~-~vdpekL~~kL~~KtGk~iK~aEIVs   69 (202)
                      +|+| +|+|.+|+.+|+++|.+++||.++.+|+.+++++|..+ ..+.+.|.++|. ++|   +.++++.
T Consensus         5 ~~~v~gm~C~~c~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~i~~~i~-~~G---~~~~~~~   70 (72)
T 1fvq_A            5 ILAVHGMTCSACTNTINTQLRALKGVTKCDISLVTNECQVTYDNEVTADSIKEIIE-DCG---FDCEILR   70 (72)
T ss_dssp             EEEECSCCSHHHHHHHHHHHHTSSSEEEECCBTTTTEEEEEECTTSCHHHHHHHHH-HHT---CCEEEEE
T ss_pred             EEEECCeecHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCHHHHHHHHH-HCC---CceEEcc
Confidence            5788 89999999999999999999999999999999999863 467889999999 778   5666653

>1mwy_A ZNTA; open-faced beta-sandwich fold, beta-alpha-beta-BETA-alpha- beta, hydrolase; NMR {Escherichia coli} SCOP: d.58.17.1 PDB: 1mwz_A

Probab=99.08  E-value=8.2e-10  Score=73.92  Aligned_cols=62  Identities=15%  Similarity=0.275  Sum_probs=53.4

Q ss_pred             EEEE-cccChhhHHHHHHHHhcCCCceEEEEEcCCCEEEEEeecCCHHHHHHHHHhhcCCceeeEEE
Q 046486            2 VLKV-DLSCSKCRKKVKKVLCKFPQIQEQSFDEKTNTVTIKVVSCSPEEIRDKLCCKGEGVIKTIEI   67 (202)
Q Consensus         2 vLKV-~M~C~gCakKIkKaL~ki~GV~~VeVDlk~~tVtV~G~~vdpekL~~kL~~KtGk~iK~aEI   67 (202)
                      .|+| +|+|.+|+.+|+++|.+++||.++.+|+.+++++|..+....+.|.++|. ++|   +.+..
T Consensus         6 ~~~v~gm~C~~C~~~ie~~l~~~~gV~~~~v~~~~~~~~v~~~~~~~~~i~~~i~-~~G---y~~~~   68 (73)
T 1mwy_A            6 SWKVSGMDCAACARKVENAVRQLAGVNQVQVLFATEKLVVDADNDIRAQVESALQ-KAG---YSLRD   68 (73)
T ss_dssp             EEEEESCCSTTHHHHHHHHHHTSSSEEEEEEETTTTEEEEEESSCCHHHHHHHHH-HHT---CEEEE
T ss_pred             EEEECCcCCHHHHHHHHHHHhcCCCeeEEEEEecCCEEEEEECCCCHHHHHHHHH-HcC---Ccccc
Confidence            5888 89999999999999999999999999999999999874323678888898 778   55543

>2qif_A Copper chaperone COPZ; tetranuclear Cu(I) cluster; 1.50A {Bacillus subtilis} SCOP: d.58.17.1 PDB: 3i9z_A 1k0v_A 1p8g_A

Probab=99.08  E-value=7.4e-10  Score=71.02  Aligned_cols=58  Identities=19%  Similarity=0.331  Sum_probs=52.4

Q ss_pred             EEEE-cccChhhHHHHHHHHhcCCCceEEEEEcCCCEEEEEee--cCCHHHHHHHHHhhcCC
Q 046486            2 VLKV-DLSCSKCRKKVKKVLCKFPQIQEQSFDEKTNTVTIKVV--SCSPEEIRDKLCCKGEG   60 (202)
Q Consensus         2 vLKV-~M~C~gCakKIkKaL~ki~GV~~VeVDlk~~tVtV~G~--~vdpekL~~kL~~KtGk   60 (202)
                      +|+| +|+|.+|+.+|+++|.+++||.++.+|+.+++++|..+  ..+.+.|.+.|. ++|+
T Consensus         5 ~~~v~gm~C~~c~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~-~~G~   65 (69)
T 2qif_A            5 TLQVEGMSCQHCVKAVETSVGELDGVSAVHVNLEAGKVDVSFDADKVSVKDIADAIE-DQGY   65 (69)
T ss_dssp             EEEEECCCSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEECTTTCCHHHHHHHHH-HTTC
T ss_pred             EEEECCcccHHHHHHHHHHHhcCCCeeEEEEEecCCEEEEEECCCCCCHHHHHHHHH-HcCC
Confidence            5888 89999999999999999999999999999999999864  367889999999 7783

>1kvi_A Copper-transporting ATPase 1; menkes, Cu-protein, hydrolase; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 1kvj_A

Probab=99.07  E-value=4.1e-10  Score=76.29  Aligned_cols=64  Identities=13%  Similarity=0.233  Sum_probs=56.2

Q ss_pred             EEEE-cccChhhHHHHHHHHhcCCCceEEEEEcCCCEEEEEee--cCCHHHHHHHHHhhcCCceeeEEEcC
Q 046486            2 VLKV-DLSCSKCRKKVKKVLCKFPQIQEQSFDEKTNTVTIKVV--SCSPEEIRDKLCCKGEGVIKTIEILK   69 (202)
Q Consensus         2 vLKV-~M~C~gCakKIkKaL~ki~GV~~VeVDlk~~tVtV~G~--~vdpekL~~kL~~KtGk~iK~aEIVs   69 (202)
                      +|+| +|+|.+|+.+|+++|.+++||.++.+|+.+++++|..+  .++.+.|.++|. ++|   +.+++.+
T Consensus        11 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~-~~G---y~~~~~~   77 (79)
T 1kvi_A           11 TISVEGMTCNSCVWTIEQQIGKVNGVHHIKVSLEEKNATIIYDPKLQTPKTLQEAID-DMG---FDAVIHN   77 (79)
T ss_dssp             EEEECCCCSTTTHHHHHHHHHHSSSCCCEEEEGGGTEEEEEECTTTCCHHHHHHHHH-HHC---CCEEECC
T ss_pred             EEEECCccCHHHHHHHHHHHhcCCCeEEEEEEccCCEEEEEECCCCCCHHHHHHHHH-HCC---CceEecC
Confidence            5888 99999999999999999999999999999999999864  357889999999 778   5666554

>1yjr_A Copper-transporting ATPase 1; metallochaperone, protein-protein interaction, copper(I), metal homeostasis, structural proteomics in europe, spine; NMR {Homo sapiens} PDB: 1yjt_A 1yju_A 1yjv_A

Probab=99.03  E-value=8.6e-10  Score=73.13  Aligned_cols=63  Identities=24%  Similarity=0.275  Sum_probs=54.3

Q ss_pred             EEEE-cccChhhHHHHHHHHhcCCCceEEEEEcCCCEEEEEee--cCCHHHHHHHHHhhcCCceeeEEEc
Q 046486            2 VLKV-DLSCSKCRKKVKKVLCKFPQIQEQSFDEKTNTVTIKVV--SCSPEEIRDKLCCKGEGVIKTIEIL   68 (202)
Q Consensus         2 vLKV-~M~C~gCakKIkKaL~ki~GV~~VeVDlk~~tVtV~G~--~vdpekL~~kL~~KtGk~iK~aEIV   68 (202)
                      .|+| +|+|.+|+.+|+++|.+++||.++.+|+.+++++|..+  .++.+.|.++|. ++|   +.+.+.
T Consensus         7 ~~~v~gm~C~~c~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~-~~G---~~~~~~   72 (75)
T 1yjr_A            7 ELVVRGMTCASCVHKIESSLTKHRGILYCSVALATNKAHIKYDPEIIGPRDIIHTIE-SLG---FEPSLV   72 (75)
T ss_dssp             EEEEETCCTTTHHHHHHHHHTTSTTEEEEEEETTTTEEEEEECTTTTHHHHHHHHHH-HHH---CEEEES
T ss_pred             EEEECCcccHHHHHHHHHHHHcCCCEEEEEEEecCCEEEEEECCCCCCHHHHHHHHH-HcC---CCceee
Confidence            6889 99999999999999999999999999999999999874  246788999998 778   555543

>2k2p_A Uncharacterized protein ATU1203; putative metal-binding domain ATU1203, ontario centre for ST proteomics, structural genomics; NMR {Agrobacterium tumefaciens str}

Probab=99.02  E-value=2.8e-10  Score=81.53  Aligned_cols=56  Identities=18%  Similarity=0.276  Sum_probs=53.2

Q ss_pred             EEEE-cccChhhHHHHHHHHhcCCCceEEEEEcCCCEEEEEeecCCHHHHHHHHHhhcC
Q 046486            2 VLKV-DLSCSKCRKKVKKVLCKFPQIQEQSFDEKTNTVTIKVVSCSPEEIRDKLCCKGE   59 (202)
Q Consensus         2 vLKV-~M~C~gCakKIkKaL~ki~GV~~VeVDlk~~tVtV~G~~vdpekL~~kL~~KtG   59 (202)
                      +|+| +|+|.+|+++|+++|.+++||.++.||+.+++++|.. .++.+.|.++|+ ++|
T Consensus        25 ~l~V~Gm~C~~C~~~Ie~aL~~~~GV~~v~v~l~~~~~~V~~-~~~~~~i~~~i~-~~G   81 (85)
T 2k2p_A           25 SFHVEDMTCGHCAGVIKGAIEKTVPGAAVHADPASRTVVVGG-VSDAAHIAEIIT-AAG   81 (85)
T ss_dssp             EEECTTCCHHHHHHHHHHHHHHHSTTCEEEEETTTTEEEEES-CCCHHHHHHHHH-HTT
T ss_pred             EEEECCCCCHHHHHHHHHHHhcCCCeeEEEEECCCCEEEEEe-cCCHHHHHHHHH-HcC
Confidence            6888 8999999999999999999999999999999999998 689999999999 788

>2kyz_A Heavy metal binding protein; structural genomics, PSI-biology, protein structure initiative, joint for structural genomics, JCSG; NMR {Thermotoga maritima}

Probab=99.02  E-value=2.8e-10  Score=75.45  Aligned_cols=55  Identities=22%  Similarity=0.420  Sum_probs=49.7

Q ss_pred             EEEE-cccChhhHHHHHHHHhcCCCceEEEEEcCCCEEEEEeecCCHHHHHHHHHhhcCC
Q 046486            2 VLKV-DLSCSKCRKKVKKVLCKFPQIQEQSFDEKTNTVTIKVVSCSPEEIRDKLCCKGEG   60 (202)
Q Consensus         2 vLKV-~M~C~gCakKIkKaL~ki~GV~~VeVDlk~~tVtV~G~~vdpekL~~kL~~KtGk   60 (202)
                      +|+| +|+|.+|+.+|+++|.++ ||.++.+|+.+++++|.. ..+ +.|.++|+ ++|+
T Consensus         4 ~~~v~gm~C~~C~~~i~~~l~~~-gv~~~~v~~~~~~~~v~~-~~~-~~i~~~i~-~~Gy   59 (67)
T 2kyz_A            4 VLYVPDISCNHCKMRISKALEEL-GVKNYEVSVEEKKVVVET-ENL-DSVLKKLE-EIDY   59 (67)
T ss_dssp             EEECGGGGSHHHHHHHHHHHHHH-TCSEEEEETTTTEEEEEC-SCH-HHHHHHHH-TTTC
T ss_pred             EEEECCcCcHHHHHHHHHHHHHc-CCeEEEEECCCCEEEEEE-CCH-HHHHHHHH-HcCC
Confidence            5788 899999999999999999 999999999999999998 344 88999998 8883

>1opz_A Potential copper-transporting ATPase; mutation, folding, abbab fold, hydrolase; NMR {Bacillus subtilis} SCOP: d.58.17.1 PDB: 1oq3_A 1oq6_A

Probab=99.01  E-value=1.2e-09  Score=72.07  Aligned_cols=62  Identities=21%  Similarity=0.423  Sum_probs=54.3

Q ss_pred             EEEE-cccChhhHHHHHHHHhcCCCceEEEEEcCCCEEEEEee--cCCHHHHHHHHHhhcCCceeeEEE
Q 046486            2 VLKV-DLSCSKCRKKVKKVLCKFPQIQEQSFDEKTNTVTIKVV--SCSPEEIRDKLCCKGEGVIKTIEI   67 (202)
Q Consensus         2 vLKV-~M~C~gCakKIkKaL~ki~GV~~VeVDlk~~tVtV~G~--~vdpekL~~kL~~KtGk~iK~aEI   67 (202)
                      .|+| +|+|.+|+.+|+++|.+++||.++.+|+..++++|..+  ..+.+.|.+.|. ++|   +.+++
T Consensus         9 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~-~~G---~~~~~   73 (76)
T 1opz_A            9 AMQVSGMTCAACAARIEKGLKRMPGVTDANVNLATETVNVIYDPAETGTAAIQEKIE-KLG---YHVVI   73 (76)
T ss_dssp             EEEEESCCSTTHHHHHHHHHHTSTTEEEEEEEGGGTEEEEEECTTTCCHHHHHHHHH-HHT---CEEEC
T ss_pred             EEEECCcccHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHH-HCC---Cceec
Confidence            5888 89999999999999999999999999999999999853  357889999998 778   45543

>1y3j_A Copper-transporting ATPase 1; ferrodoxin-like fold, beta-alpha-beta-BETA-alpha-beta structure, structural proteomics in europe, spine; NMR {Homo sapiens} PDB: 1y3k_A

Probab=99.01  E-value=5.1e-10  Score=75.65  Aligned_cols=65  Identities=11%  Similarity=0.200  Sum_probs=56.5

Q ss_pred             CEEEE-cccChhhHHHHHHHHhcCCCceEEEEEcCCCEEEEEee--cCCHHHHHHHHHhhcCCceeeEEEcC
Q 046486            1 MVLKV-DLSCSKCRKKVKKVLCKFPQIQEQSFDEKTNTVTIKVV--SCSPEEIRDKLCCKGEGVIKTIEILK   69 (202)
Q Consensus         1 mvLKV-~M~C~gCakKIkKaL~ki~GV~~VeVDlk~~tVtV~G~--~vdpekL~~kL~~KtGk~iK~aEIVs   69 (202)
                      ++|+| +|+|.+|+.+|+++|.+++||.++.+|+.+++++|..+  .++.+.|.++|. ++|   +.+.++.
T Consensus         5 ~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~-~~G---y~~~~~~   72 (77)
T 1y3j_A            5 CYIQVTGMTCASCVANIERNLRREEGIYSILVALMAGKAEVRYNPAVIQPPMIAEFIR-ELG---FGATVIE   72 (77)
T ss_dssp             EEEEESCGGGCSHHHHHHHHHTTSSSEEECCCBTTTTBEEEEECTTTSCHHHHHHHHH-HHT---SCEEEES
T ss_pred             EEEEECCeeCHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHH-HcC---CceEECC
Confidence            36889 99999999999999999999999999999999999864  357889999999 778   5566554

>2ldi_A Zinc-transporting ATPase; metal homeostasis, metallochaperones, hydrolase; NMR {Synechocystis SP}

Probab=98.98  E-value=9.8e-10  Score=71.26  Aligned_cols=58  Identities=17%  Similarity=0.344  Sum_probs=52.1

Q ss_pred             EEEE-cccChhhHHHHHHHHhcCCCceEEEEEcCCCEEEEEee--cCCHHHHHHHHHhhcCC
Q 046486            2 VLKV-DLSCSKCRKKVKKVLCKFPQIQEQSFDEKTNTVTIKVV--SCSPEEIRDKLCCKGEG   60 (202)
Q Consensus         2 vLKV-~M~C~gCakKIkKaL~ki~GV~~VeVDlk~~tVtV~G~--~vdpekL~~kL~~KtGk   60 (202)
                      .|+| +|+|.+|+.+|+++|.+++||.++.+|+.+++++|..+  ..+.+.|.++|. ++|+
T Consensus         6 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~-~~G~   66 (71)
T 2ldi_A            6 QMQVGGMRCAACASSIERALERLKGVAEASVTVATGRLTVTYDPKQVSEITIQERIA-ALGY   66 (71)
T ss_dssp             EEEEETCTTSGGGHHHHTGGGGCSSEEEEEEETTTTEEEEEECTTTCCTHHHHHHHH-TTTC
T ss_pred             EEEECCccCHHHHHHHHHHHhcCCCeeEEEEEecCCEEEEEECCCCCCHHHHHHHHH-HcCC
Confidence            5888 89999999999999999999999999999999999864  357788999999 7883

>2ew9_A Copper-transporting ATPase 2; copper trafficking, ferrodoxin-like fold, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens}

Probab=98.96  E-value=1.7e-09  Score=81.10  Aligned_cols=62  Identities=16%  Similarity=0.251  Sum_probs=55.3

Q ss_pred             EEEE-cccChhhHHHHHHHHhcCCCceEEEEEcCCCEEEEEee--cCCHHHHHHHHHhhcCCceeeEEE
Q 046486            2 VLKV-DLSCSKCRKKVKKVLCKFPQIQEQSFDEKTNTVTIKVV--SCSPEEIRDKLCCKGEGVIKTIEI   67 (202)
Q Consensus         2 vLKV-~M~C~gCakKIkKaL~ki~GV~~VeVDlk~~tVtV~G~--~vdpekL~~kL~~KtGk~iK~aEI   67 (202)
                      .|+| +|+|.+|+.+|+++|.+++||.++.||+.+++++|..+  .++.+.|+++|. ++|   +.+++
T Consensus        83 ~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~-~~G---y~~~~  147 (149)
T 2ew9_A           83 ELTITGMTCASCVHNIESKLTRTNGITYASVALATSKALVKFDPEIIGPRDIIKIIE-EIG---FHASL  147 (149)
T ss_dssp             EEEEESCCSHHHHHHHHHHHHHSSSCCEEEEETTTTEEEEECCTTTSCHHHHHHHHH-HHT---CEEEC
T ss_pred             EEEEEeccCHHHHHHHHHHHhcCCCeEEEEEEcCCCEEEEEECCCCCCHHHHHHHHH-hCC---CceEe
Confidence            5889 99999999999999999999999999999999999864  357899999999 888   55554

>1qup_A Superoxide dismutase 1 copper chaperone; two domains, beta-alpha-beta-BETA-alpha-beta and beta barrel; 1.80A {Saccharomyces cerevisiae} SCOP: b.1.8.1 d.58.17.1

Probab=98.95  E-value=1.9e-09  Score=91.28  Aligned_cols=66  Identities=21%  Similarity=0.406  Sum_probs=60.0

Q ss_pred             EEEEcccChhhHHHHHHHHhcCCCceEEEEEcCCCEEEEEeecCCHHHHHHHHHhhcCCceeeEEEcCCCC
Q 046486            2 VLKVDLSCSKCRKKVKKVLCKFPQIQEQSFDEKTNTVTIKVVSCSPEEIRDKLCCKGEGVIKTIEILKPDE   72 (202)
Q Consensus         2 vLKV~M~C~gCakKIkKaL~ki~GV~~VeVDlk~~tVtV~G~~vdpekL~~kL~~KtGk~iK~aEIVsp~k   72 (202)
                      +|+|.|+|.+|+++|+++|.+++||.+++||+.+++++|.+ .++++.|+++|+ ++|   +.++++....
T Consensus         9 ~l~V~MtC~~Ca~~IekaL~~l~GV~~v~Vnl~~~~v~V~~-~~~~~~I~~aI~-~~G---y~a~~~~~~~   74 (222)
T 1qup_A            9 TYAIPMHCENCVNDIKACLKNVPGINSLNFDIEQQIMSVES-SVAPSTIINTLR-NCG---KDAIIRGAGK   74 (222)
T ss_dssp             EEECCCCSTTHHHHHHHHHTTCTTEEEEEEETTTTEEEEEE-SSCHHHHHHHHH-HTT---CCCEEECCSC
T ss_pred             EEEEccccHHHHHHHHHHHhcCCCeeEEEEEcCCCEEEEec-cCCHHHHHHHHH-HcC---CccccccCCC
Confidence            57889999999999999999999999999999999999998 689999999999 889   6777776543

>1jww_A Potential copper-transporting ATPase; beta-alpha-beta-BETA-alpha-beta, hydrolase; NMR {Bacillus subtilis} SCOP: d.58.17.1 PDB: 2voy_A 1kqk_A

Probab=98.94  E-value=2.3e-09  Score=72.05  Aligned_cols=64  Identities=16%  Similarity=0.346  Sum_probs=56.0

Q ss_pred             EEEE-cccChhhHHHHHHHHhcCCCceEEEEEcCCCEEEEEee--cCCHHHHHHHHHhhcCCceeeEEEcC
Q 046486            2 VLKV-DLSCSKCRKKVKKVLCKFPQIQEQSFDEKTNTVTIKVV--SCSPEEIRDKLCCKGEGVIKTIEILK   69 (202)
Q Consensus         2 vLKV-~M~C~gCakKIkKaL~ki~GV~~VeVDlk~~tVtV~G~--~vdpekL~~kL~~KtGk~iK~aEIVs   69 (202)
                      .|+| +|+|.+|+.+|+++|.+++||.++.+|+.+++++|..+  ..+.+.|.++|. ++|   +.+.+..
T Consensus         6 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~-~~G---~~~~~~~   72 (80)
T 1jww_A            6 EFDIEGMTCAACANRIEKRLNKIEGVANAPVNFALETVTVEYNPKEASVSDLKEAVD-KLG---YKLKLKG   72 (80)
T ss_dssp             EEEEESCCCHHHHHHHHHHHHTSTTEEECCCCSSSSEEEEEECTTTCCHHHHHHHHH-HHT---SEEEECC
T ss_pred             EEEECCccCHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHH-HcC---CeEEecC
Confidence            5888 89999999999999999999999999999999999764  357889999998 788   6666654

>1p6t_A Potential copper-transporting ATPase; COPA, P-type ATPase, water-soluble region, beta-alpha-beta- beta-alpha-beta fold; NMR {Bacillus subtilis} SCOP: d.58.17.1 d.58.17.1 PDB: 2rml_A

Probab=98.90  E-value=3.1e-09  Score=80.28  Aligned_cols=66  Identities=15%  Similarity=0.337  Sum_probs=58.4

Q ss_pred             EEEE-cccChhhHHHHHHHHhcCCCceEEEEEcCCCEEEEEee--cCCHHHHHHHHHhhcCCceeeEEEcCCC
Q 046486            2 VLKV-DLSCSKCRKKVKKVLCKFPQIQEQSFDEKTNTVTIKVV--SCSPEEIRDKLCCKGEGVIKTIEILKPD   71 (202)
Q Consensus         2 vLKV-~M~C~gCakKIkKaL~ki~GV~~VeVDlk~~tVtV~G~--~vdpekL~~kL~~KtGk~iK~aEIVsp~   71 (202)
                      .|+| +|+|.+|+.+|+++|.+++||.++.||+.+++++|..+  .++.+.|+++|. ++|   +.+.++++.
T Consensus        77 ~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~-~~G---y~~~~~~~~  145 (151)
T 1p6t_A           77 EFDIEGMTCAACANRIEKRLNKIEGVANAPVNFALETVTVEYNPKEASVSDLKEAVD-KLG---YKLKLKGEQ  145 (151)
T ss_dssp             EEEESSCCSSSHHHHHHHHHTTSSSEEECCEETTTTEEEEEECTTTCCHHHHHHHHH-HHT---CCEEESCSS
T ss_pred             EEEecCCCCHHHHHHHHHHHhcCCCceEEEEEccCCEEEEEECCCCCCHHHHHHHHH-HcC---CCeEEcCcc
Confidence            6889 89999999999999999999999999999999999864  468999999999 889   677766543

>2kkh_A Putative heavy metal transporter; zinc transport, metal binding, metal selectivity, ferredoxin fold, ATP-binding, hydrolase; NMR {Arabidopsis thaliana}

Probab=98.88  E-value=8.3e-09  Score=73.53  Aligned_cols=66  Identities=17%  Similarity=0.192  Sum_probs=57.4

Q ss_pred             EEEE-cccChhhHHHHHHHHhcCCCceEEEEEcCCCEEEEEee--cCCHHHHHHHHHhhcCCceeeEEEcCCC
Q 046486            2 VLKV-DLSCSKCRKKVKKVLCKFPQIQEQSFDEKTNTVTIKVV--SCSPEEIRDKLCCKGEGVIKTIEILKPD   71 (202)
Q Consensus         2 vLKV-~M~C~gCakKIkKaL~ki~GV~~VeVDlk~~tVtV~G~--~vdpekL~~kL~~KtGk~iK~aEIVsp~   71 (202)
                      +|.| +|+|.+|+.+|+++|.+++||.++.+|+..++++|..+  .++.+.|.++|. .+|   +.+.++...
T Consensus        19 ~~~v~gm~C~~C~~~ie~~l~~~~GV~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~-~~G---y~~~~~~~~   87 (95)
T 2kkh_A           19 YFDVLGICCTSEVPIIENILKSLDGVKEYSVIVPSRTVIVVHDSLLISPFQIAKALN-EAR---LEANVRVNG   87 (95)
T ss_dssp             EEEETTCCTTTTHHHHHHHHHHSSSEEEEEEETTTTEEEEEECTTTCCHHHHHHHHH-HHT---CCEEESCCC
T ss_pred             EEEECCcCCHHHHHHHHHHHhcCCCeeEEEEEccCCEEEEEECCCCCCHHHHHHHHH-HcC---CceEEecCC
Confidence            5888 89999999999999999999999999999999999864  257889999998 788   667666544

>1jk9_B CCS, copper chaperone for superoxide dismutase; protein-protein complex, heterodimer, metallochaperone, amyotrophic lateral sclerosis; 2.90A {Saccharomyces cerevisiae} SCOP: b.1.8.1 d.58.17.1

Probab=98.84  E-value=5.4e-09  Score=90.16  Aligned_cols=65  Identities=22%  Similarity=0.406  Sum_probs=58.7

Q ss_pred             EEEEcccChhhHHHHHHHHhcCCCceEEEEEcCCCEEEEEeecCCHHHHHHHHHhhcCCceeeEEEcCCC
Q 046486            2 VLKVDLSCSKCRKKVKKVLCKFPQIQEQSFDEKTNTVTIKVVSCSPEEIRDKLCCKGEGVIKTIEILKPD   71 (202)
Q Consensus         2 vLKV~M~C~gCakKIkKaL~ki~GV~~VeVDlk~~tVtV~G~~vdpekL~~kL~~KtGk~iK~aEIVsp~   71 (202)
                      +|+|.|+|.+|+++|+++|.+++||.+++||+.+++++|.+ .++++.|+++|+ ++|   +.++++...
T Consensus        10 ~l~V~MtC~~Ca~~IekaL~~l~GV~~v~Vnl~~~~v~V~~-~~~~~~I~~aIe-~~G---y~a~~~~~~   74 (249)
T 1jk9_B           10 TYAIPMHCENCVNDIKACLKNVPGINSLNFDIEQQIMSVES-SVAPSTIINTLR-NCG---KDAIIRGAG   74 (249)
T ss_dssp             EEECCCCSSSHHHHHHHHHTTCTTEEEEEEETTTTEEEEEE-SSCHHHHHHHHH-TTT---CCCEEEEES
T ss_pred             EEEEeeccHHHHHHHHHHHhccCCeeEEEEEcCCCeEEEec-CCCHHHHHHHHH-HhC---CCcccccCC
Confidence            57788999999999999999999999999999999999998 689999999999 889   666666544

>2rop_A Copper-transporting ATPase 2; wilson protein, mobility, protein-protein interaction, alternative splicing, ATP-binding, copper transport cytoplasm; NMR {Homo sapiens}

Probab=98.79  E-value=1.4e-08  Score=81.67  Aligned_cols=65  Identities=17%  Similarity=0.364  Sum_probs=56.6

Q ss_pred             EEEE-cccChhhHHHHHHHHhcCCCceEEEEEcCCCEEEEEee--cCCHHHHHHHHHhhcCCceeeEEEcCC
Q 046486            2 VLKV-DLSCSKCRKKVKKVLCKFPQIQEQSFDEKTNTVTIKVV--SCSPEEIRDKLCCKGEGVIKTIEILKP   70 (202)
Q Consensus         2 vLKV-~M~C~gCakKIkKaL~ki~GV~~VeVDlk~~tVtV~G~--~vdpekL~~kL~~KtGk~iK~aEIVsp   70 (202)
                      .|+| +|+|.+|+.+|+++|.+++||.++.||+.+++++|..+  .++.+.|+++|. ++|   +.+.++..
T Consensus       125 ~l~v~Gm~C~~C~~~ie~~l~~~~GV~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~-~~G---y~~~~~~~  192 (202)
T 2rop_A          125 LIAIAGMTCASCVHSIEGMISQLEGVQQISVSLAEGTATVLYNPAVISPEELRAAIE-DMG---FEASVVSE  192 (202)
T ss_dssp             EEEESCCCSTHHHHHHHHHGGGSSSEEEEEEETTTTEEEEEECTTTCCHHHHHHHHH-HHT---SCEEEC--
T ss_pred             EEEECCccCHHHHHHHHHHHHcCCCeEEEEEEccCCEEEEEECCCCCCHHHHHHHHH-HcC---CceEEcCC
Confidence            5889 89999999999999999999999999999999999864  367899999999 789   66777654

>2aj0_A Probable cadmium-transporting ATPase; ferrodoxin-like fold, beta-alpha-beta-BETA-alpha-beta, metal binding protein, hydrolase; NMR {Listeria monocytogenes} PDB: 2aj1_A

Probab=98.72  E-value=2.9e-08  Score=66.06  Aligned_cols=52  Identities=19%  Similarity=0.365  Sum_probs=44.9

Q ss_pred             EEEE-cccChhhHHHHHHHHhcCCCceEEEEEcCCCEEEEEeecCCHHHHHHHHHhhcC
Q 046486            2 VLKV-DLSCSKCRKKVKKVLCKFPQIQEQSFDEKTNTVTIKVVSCSPEEIRDKLCCKGE   59 (202)
Q Consensus         2 vLKV-~M~C~gCakKIkKaL~ki~GV~~VeVDlk~~tVtV~G~~vdpekL~~kL~~KtG   59 (202)
                      +|+| +|+|.+|+.+|+++|.+++||.++.+|+.+++++|.+ ..+    .+.|. ++|
T Consensus         6 ~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~-~~~----~~~i~-~~G   58 (71)
T 2aj0_A            6 VYRVDGLSCTNCAAKFERNVKEIEGVTEAIVNFGASKITVTG-EAS----IQQVE-QAG   58 (71)
T ss_dssp             EEEEESCCCHHHHHHHHHHHHHSTTEEEEEECCSSEEEEEEE-SCC----HHHHH-HHH
T ss_pred             EEEECCcccHHHHHHHHHHHHcCCCeEEEEEECCCCEEEEEe-cCc----HHHHH-HhC
Confidence            5888 8999999999999999999999999999999999998 444    34555 555

>2ew9_A Copper-transporting ATPase 2; copper trafficking, ferrodoxin-like fold, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens}

Probab=98.71  E-value=4.9e-08  Score=73.09  Aligned_cols=64  Identities=16%  Similarity=0.238  Sum_probs=55.8

Q ss_pred             EEEE-cccChhhHHHHHHHHhcCCCceEEEEEcCCCEEEEEee--cCCHHHHHHHHHhhcCCceeeEEEcC
Q 046486            2 VLKV-DLSCSKCRKKVKKVLCKFPQIQEQSFDEKTNTVTIKVV--SCSPEEIRDKLCCKGEGVIKTIEILK   69 (202)
Q Consensus         2 vLKV-~M~C~gCakKIkKaL~ki~GV~~VeVDlk~~tVtV~G~--~vdpekL~~kL~~KtGk~iK~aEIVs   69 (202)
                      +|+| +|+|.+|+.+|+++|.+++||.++.+|+.+++++|..+  ..+.+.|.++|. ++|   +.+.++.
T Consensus         7 ~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~-~~G---~~~~~~~   73 (149)
T 2ew9_A            7 FLQIKGMTCASCVSNIERNLQKEAGVLSVLVALMAGKAEIKYDPEVIQPLEIAQFIQ-DLG---FEAAVME   73 (149)
T ss_dssp             EEEEECCCSSSHHHHHHHHHHTTSSCCCEEEETTTTEEEEEECTTTCCHHHHHHHHH-HHT---CEEEECS
T ss_pred             EEEECCeecHHHHHHHHHHHhcCCCcEEEEEEecCCEEEEEEcCCCCCHHHHHHHHh-cCC---CceEeec
Confidence            6889 99999999999999999999999999999999999763  367889999999 778   5666543

>2rop_A Copper-transporting ATPase 2; wilson protein, mobility, protein-protein interaction, alternative splicing, ATP-binding, copper transport cytoplasm; NMR {Homo sapiens}

Probab=98.44  E-value=3.4e-07  Score=73.51  Aligned_cols=56  Identities=14%  Similarity=0.304  Sum_probs=50.8

Q ss_pred             EEEE-cccChhhHHHHHHHHhcCCCceEEEEEcCCCEEEEEee--cCCHHHHHHHHHhhc
Q 046486            2 VLKV-DLSCSKCRKKVKKVLCKFPQIQEQSFDEKTNTVTIKVV--SCSPEEIRDKLCCKG   58 (202)
Q Consensus         2 vLKV-~M~C~gCakKIkKaL~ki~GV~~VeVDlk~~tVtV~G~--~vdpekL~~kL~~Kt   58 (202)
                      +|+| +|+|.+|+.+|+++|.+++||.++.|++.+++++|..+  .++.+.|.++|. ++
T Consensus        23 ~l~v~Gm~C~~C~~~ie~~l~~~~GV~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~-~~   81 (202)
T 2rop_A           23 QLRIDGMHCKSCVLNIEENIGQLLGVQSIQVSLENKTAQVKYDPSCTSPVALQRAIE-AL   81 (202)
T ss_dssp             EEEEESGGGSTHHHHHHHHTTSBTTEEEEEEETTTTEEEEEECTTTCCHHHHHHHHT-TS
T ss_pred             EEEECCeEcHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHH-Hh
Confidence            5888 89999999999999999999999999999999999864  367889999998 65

>1p6t_A Potential copper-transporting ATPase; COPA, P-type ATPase, water-soluble region, beta-alpha-beta- beta-alpha-beta fold; NMR {Bacillus subtilis} SCOP: d.58.17.1 d.58.17.1 PDB: 2rml_A

Probab=98.28  E-value=2.6e-06  Score=64.06  Aligned_cols=58  Identities=21%  Similarity=0.413  Sum_probs=51.1

Q ss_pred             EEEE-cccChhhHHHHHHHHhcCCCceEEEEEcCCCEEEEEee--cCCHHHHHHHHHhhcCC
Q 046486            2 VLKV-DLSCSKCRKKVKKVLCKFPQIQEQSFDEKTNTVTIKVV--SCSPEEIRDKLCCKGEG   60 (202)
Q Consensus         2 vLKV-~M~C~gCakKIkKaL~ki~GV~~VeVDlk~~tVtV~G~--~vdpekL~~kL~~KtGk   60 (202)
                      .|.| +|+|.+|+.+|+++|.+++||.++.+++.+++++|..+  ..+.+.|.+.|. ++|+
T Consensus         9 ~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~-~~G~   69 (151)
T 1p6t_A            9 AMQVSGMTCAACAARIEKGLKRMPGVTDANVNLATETVNVIYDPAETGTAAIQEKIE-KLGY   69 (151)
T ss_dssp             EEEEESCCSSHHHHHHHHHHTTSSSEEEEEEEGGGTEEEEEECTTTSCHHHHHHHHH-HHTC
T ss_pred             EEEECCCcCHHHHHHHHHHHhcCCCeeEEEEEccCCEEEEEEcCCcCCHHHHHHHHH-HcCC
Confidence            4788 89999999999999999999999999999999999753  357888999898 6774

>3j09_A COPA, copper-exporting P-type ATPase A; copper transporter, adenosine triphosph archaeal proteins, cation transport proteins; 10.00A {Archaeoglobus fulgidus}

Probab=98.16  E-value=4.1e-06  Score=80.90  Aligned_cols=57  Identities=18%  Similarity=0.314  Sum_probs=53.1

Q ss_pred             EEEE-cccChhhHHHHHHHHhcCCCceEEEEEcCCCEEEEEee--cCCHHHHHHHHHhhcC
Q 046486            2 VLKV-DLSCSKCRKKVKKVLCKFPQIQEQSFDEKTNTVTIKVV--SCSPEEIRDKLCCKGE   59 (202)
Q Consensus         2 vLKV-~M~C~gCakKIkKaL~ki~GV~~VeVDlk~~tVtV~G~--~vdpekL~~kL~~KtG   59 (202)
                      +|+| +|+|.+|+.+|+++|.+++||.+++||+.+++++|..+  ..+.++|.++|+ +.|
T Consensus         5 ~l~V~GM~Ca~Ca~~Ie~~L~~~~GV~~v~Vnl~~~~~~V~~d~~~~~~~~i~~ai~-~~G   64 (723)
T 3j09_A            5 TVRVTGMTCAMCVKSIETAVGSLEGVEEVRVNLATETAFIRFDEKRIDFETIKRVIE-DLG   64 (723)
T ss_dssp             EEEEETCCSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEECTTTCCHHHHHHHHH-HHC
T ss_pred             EEEeCCCCchHHHHHHHHHHhcCCCceEEEEEcCCCEEEEEeCCCcCCHHHHHHHHH-hcC
Confidence            6888 89999999999999999999999999999999999864  478999999999 788

>2x3d_A SSO6206; unknown function; 2.70A {Sulfolobus solfataricus}

Probab=95.38  E-value=0.031  Score=42.43  Aligned_cols=59  Identities=17%  Similarity=0.241  Sum_probs=45.1

Q ss_pred             HHHHHHHhcCCCceEEEE-----EcCCC--EEEEEeecCCHHHHHHHHHhhcCCceeeEEEcCCCCC
Q 046486           14 KKVKKVLCKFPQIQEQSF-----DEKTN--TVTIKVVSCSPEEIRDKLCCKGEGVIKTIEILKPDEK   73 (202)
Q Consensus        14 kKIkKaL~ki~GV~~VeV-----Dlk~~--tVtV~G~~vdpekL~~kL~~KtGk~iK~aEIVsp~kp   73 (202)
                      -.+.++|.+++||..|.+     |.++.  +|||.|++++.+.|.++|+ +.|..|.++.-|..++.
T Consensus        21 vd~A~~l~~~~gV~gVnItv~EvD~eTe~lkItIEG~~idfd~I~~~IE-~~Gg~IHSIDEVvaG~~   86 (96)
T 2x3d_A           21 VDLAERISKLDGVEGVNISVTDMDVETMGLMIIIEGTSLNFDDIRKMLE-EEGCAIHSIDEVVSGNR   86 (96)
T ss_dssp             HHHHHHHHTSTTEEEEEEEEEEECSSEEEEEEEEEESSCCHHHHHHHHH-HTTCEEEEEEEEEEESS
T ss_pred             HHHHHHHHhCCCcceEEEEEEEeeccccEEEEEEEecCCCHHHHHHHHH-HcCCeEEeeeeeeeccc
Confidence            357789999999887644     44433  4466787899999999999 88889999996655543

>3bpd_A Uncharacterized protein; heptamer, Mg+2 ION, PSI-2, NYSGXRC, structural genom protein structure initiative; 2.80A {Archaeoglobus fulgidus dsm 4304} SCOP: d.58.61.1

Probab=95.27  E-value=0.039  Score=42.15  Aligned_cols=57  Identities=18%  Similarity=0.222  Sum_probs=43.4

Q ss_pred             HHHHHHHhcCCCceEEEE-----EcCCC--EEEEEeecCCHHHHHHHHHhhcCCceeeEEEcCCC
Q 046486           14 KKVKKVLCKFPQIQEQSF-----DEKTN--TVTIKVVSCSPEEIRDKLCCKGEGVIKTIEILKPD   71 (202)
Q Consensus        14 kKIkKaL~ki~GV~~VeV-----Dlk~~--tVtV~G~~vdpekL~~kL~~KtGk~iK~aEIVsp~   71 (202)
                      -.+.++|.+++||..|.+     |.++.  +|||.|+++|.+.|.++|+ +.|..|.++.-|-.+
T Consensus        22 vdlA~~l~~~~gV~gVnItV~EvD~eTe~lkItIEG~dIdfd~I~~~IE-~~GgvIHSIDEVvaG   85 (100)
T 3bpd_A           22 IVFALKLSELENVDGVNIHLSEIDQATENIKITILGNNLDYEQIKGVIE-DMGGVIHSVDEVVAG   85 (100)
T ss_dssp             HHHHHHHHTSTTEEEEEEEEEEECSSEEEEEEEEEEEEECHHHHHHHHH-TTTCEEEEEEEEEEE
T ss_pred             HHHHHHHHhCCCcceEEEEEEEeeccccEEEEEEEecCCCHHHHHHHHH-HcCCeEEeeeeeeec
Confidence            356789999999887644     44433  4466787899999999999 888899999855433

>2raq_A Conserved protein MTH889; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 3.11A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: d.58.61.1

Probab=95.15  E-value=0.03  Score=42.56  Aligned_cols=58  Identities=19%  Similarity=0.255  Sum_probs=44.5

Q ss_pred             HHHHHHhcCCCceEEE-----EEcCCC--EEEEEeecCCHHHHHHHHHhhcCCceeeEEEcCCCCC
Q 046486           15 KVKKVLCKFPQIQEQS-----FDEKTN--TVTIKVVSCSPEEIRDKLCCKGEGVIKTIEILKPDEK   73 (202)
Q Consensus        15 KIkKaL~ki~GV~~Ve-----VDlk~~--tVtV~G~~vdpekL~~kL~~KtGk~iK~aEIVsp~kp   73 (202)
                      .+.++|.+++||..|.     +|.++.  +|||.|+++|.+.|.++|+ +.|..|.++.-|-.++.
T Consensus        23 d~A~~l~~~~gV~gVnItv~EvD~eTe~lkitiEG~~id~d~I~~~IE-~~Gg~IHSIDEVvaG~~   87 (97)
T 2raq_A           23 EYAKYLSELRGVEGVNITLMEIDKETENIKVTIQGNDLDFDEITRAIE-SYGGSIHSVDEVVAGRT   87 (97)
T ss_dssp             HHHHHHHHSTTCCEEEEEEEEECSSCEEEEEEEECSSCCHHHHHHHHH-HTTCEEEEEEEEEEESS
T ss_pred             HHHHHHHhCCCcceEEEEEEEeeccccEEEEEEEecCCCHHHHHHHHH-HcCCeEEeeeeeeecce
Confidence            5678899999988654     444444  4466787899999999999 88889999996655543

>2jsx_A Protein NAPD; TAT, proofreading, cytoplasm, chaperone; NMR {Escherichia coli K12} PDB: 2pq4_A

Probab=88.84  E-value=2.4  Score=31.29  Aligned_cols=57  Identities=11%  Similarity=0.138  Sum_probs=39.4

Q ss_pred             HHHHHHHHhcCCCceEEEEEcCCCEEEEEeecCCHHHHHHHHHhhcC--CceeeEEEcCC
Q 046486           13 RKKVKKVLCKFPQIQEQSFDEKTNTVTIKVVSCSPEEIRDKLCCKGE--GVIKTIEILKP   70 (202)
Q Consensus        13 akKIkKaL~ki~GV~~VeVDlk~~tVtV~G~~vdpekL~~kL~~KtG--k~iK~aEIVsp   70 (202)
                      ...|.++|.+|+||+-..+|.++++++|+-..-+.+.|.+.|. +..  .-+.++.++--
T Consensus        19 ~~~V~~~L~~ipgvEi~~~~~~~GkiVV~iEa~~~~~l~~~i~-~I~~i~GVlst~lvy~   77 (95)
T 2jsx_A           19 ISDISTQLNAFPGCEVAVSDAPSGQLIVVVEAEDSETLIQTIE-SVRNVEGVLAVSLVYH   77 (95)
T ss_dssp             HHHHHHHHTTSTTEEEEEEETTTTEEEEEEEESSHHHHHHHHH-HHTTSTTEEEEEESSC
T ss_pred             HHHHHHHHHCCCCeEEEEecCCCCCEEEEEEeCCHHHHHHHHH-HHhcCCCccEEeEEEE
Confidence            6789999999999955456776777777643456666655554 322  33788888864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	202
d1qupa2	72	d.58.17.1 (A:2-73) Copper chaperone for superoxide	1e-06
d1cc8a_	72	d.58.17.1 (A:) ATX1 metallochaperone protein (ATOX	8e-05
d1mwza_	73	d.58.17.1 (A:) Metal ion-transporting ATPase ZntA,	3e-04
d2aw0a_	72	d.58.17.1 (A:) Menkes copper-transporting ATPase {	3e-04
d1sb6a_	64	d.58.17.1 (A:) Copper chaperone {Synechocystis sp.	5e-04
d2ggpb1	72	d.58.17.1 (B:1-72) Copper transporter domain ccc2a	8e-04
d1p6ta1	72	d.58.17.1 (A:1-72) Potential copper-translocating	0.001
d1osda_	72	d.58.17.1 (A:) Mercuric ion binding protein MerP {	0.001
d2qifa1	69	d.58.17.1 (A:1-69) Copper chaperone {Bacillus subt	0.001
d1kvja_	79	d.58.17.1 (A:) Menkes copper-transporting ATPase {	0.002
d1fe0a_	66	d.58.17.1 (A:) ATX1 metallochaperone protein (ATOX	0.004

>d1qupa2 d.58.17.1 (A:2-73) Copper chaperone for superoxide dismutase, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 72

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Copper chaperone for superoxide dismutase, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.5 bits (100), Expect = 1e-06
 Identities = 12/54 (22%), Positives = 23/54 (42%), Gaps = 1/54 (1%)

Query: 1  MVLKVDLSCSKCRKKVKKVLCKFPQIQEQSFDEKTNTVTIKVVSCSPEEIRDKL 54
              + + C  C   +K  L   P I   +FD +   ++++  S +P  I + L
Sbjct: 8  ATYAIPMHCENCVNDIKACLKNVPGINSLNFDIEQQIMSVE-SSVAPSTIINTL 60

>d1cc8a_ d.58.17.1 (A:) ATX1 metallochaperone protein (ATOX1) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 72

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: ATX1 metallochaperone protein (ATOX1)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.4 bits (87), Expect = 8e-05
 Identities = 12/54 (22%), Positives = 21/54 (38%), Gaps = 2/54 (3%)

Query: 2  VLKVDLSCSKCRKKVKKVLCKFPQIQEQ-SFDEKTNTVTIKVVSCSPEEIRDKL 54
             V ++CS C   V KVL K      +     +   V +   +   + I +K+
Sbjct: 7  QFNVVMTCSGCSGAVNKVLTKLEPDVSKIDISLEKQLVDVY-TTLPYDFILEKI 59

>d1mwza_ d.58.17.1 (A:) Metal ion-transporting ATPase ZntA, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 73

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Metal ion-transporting ATPase ZntA, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 35.9 bits (83), Expect = 3e-04
 Identities = 8/53 (15%), Positives = 21/53 (39%), Gaps = 1/53 (1%)

Query: 3  LKVD-LSCSKCRKKVKKVLCKFPQIQEQSFDEKTNTVTIKVVSCSPEEIRDKL 54
           KV  + C+ C +KV+  + +   + +      T  + +   +    ++   L
Sbjct: 7  WKVSGMDCAACARKVENAVRQLAGVNQVQVLFATEKLVVDADNDIRAQVESAL 59

>d2aw0a_ d.58.17.1 (A:) Menkes copper-transporting ATPase {Human (Homo sapiens) [TaxId: 9606]} Length = 72

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Menkes copper-transporting ATPase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.9 bits (83), Expect = 3e-04
 Identities = 12/56 (21%), Positives = 28/56 (50%), Gaps = 3/56 (5%)

Query: 2  VLKVD-LSCSKCRKKVKKVLCKFPQIQEQSFDEKTNTVTIKVVS--CSPEEIRDKL 54
          V+ +D ++C+ C + ++ V+ K P ++        +  T++      SPE +R  +
Sbjct: 6  VINIDGMTCNSCVQSIEGVISKKPGVKSIRVSLANSNGTVEYDPLLTSPETLRGAI 61

>d1sb6a_ d.58.17.1 (A:) Copper chaperone {Synechocystis sp. pcc 6803, Scatx1 [TaxId: 1148]} Length = 64

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Copper chaperone
species: Synechocystis sp. pcc 6803, Scatx1 [TaxId: 1148]

 Score = 35.3 bits (81), Expect = 5e-04
 Identities = 12/55 (21%), Positives = 22/55 (40%), Gaps = 2/55 (3%)

Query: 1  MVLKV-DLSCSKCRKKVKKVLCKFPQIQEQSFDEKTNTVTIKVVSCSPEEIRDKL 54
          + L V  ++C  C + V K +           D  +  VTI   +   E++R  +
Sbjct: 3  IQLTVPTIACEACAEAVTKAVQNEDAQATVQVDLTSKKVTIT-SALGEEQLRTAI 56

>d2ggpb1 d.58.17.1 (B:1-72) Copper transporter domain ccc2a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 72

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Copper transporter domain ccc2a
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 34.7 bits (80), Expect = 8e-04
 Identities = 9/56 (16%), Positives = 23/56 (41%), Gaps = 2/56 (3%)

Query: 1  MVLKVD-LSCSKCRKKVKKVLCKFPQIQEQSFDEKTNTVTIKVVS-CSPEEIRDKL 54
          ++L V  ++CS C   +   L     + +      TN   +   +  + + I++ +
Sbjct: 4  VILAVHGMTCSACTNTINTQLRALKGVTKCDISLVTNECQVTYDNEVTADSIKEII 59

>d1p6ta1 d.58.17.1 (A:1-72) Potential copper-translocating P-type ATPase CopA (YvgX) {Bacillus subtilis [TaxId: 1423]} Length = 72

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Potential copper-translocating P-type ATPase CopA (YvgX)
species: Bacillus subtilis [TaxId: 1423]

 Score = 34.3 bits (79), Expect = 0.001
 Identities = 13/65 (20%), Positives = 32/65 (49%), Gaps = 3/65 (4%)

Query: 1  MVLKVD-LSCSKCRKKVKKVLCKFPQIQEQSFDEKTNTVTIKVVS--CSPEEIRDKLCCK 57
          + ++V  ++C+ C  +++K L + P + + + +  T TV +           I++K+   
Sbjct: 8  IAMQVSGMTCAACAARIEKGLKRMPGVTDANVNLATETVNVIYDPAETGTAAIQEKIEKL 67

Query: 58 GEGVI 62
          G  V+
Sbjct: 68 GYHVV 72

>d1osda_ d.58.17.1 (A:) Mercuric ion binding protein MerP {Ralstonia metallidurans CH34 [TaxId: 266264]} Length = 72

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Mercuric ion binding protein MerP
species: Ralstonia metallidurans CH34 [TaxId: 266264]

 Score = 34.3 bits (79), Expect = 0.001
 Identities = 11/56 (19%), Positives = 21/56 (37%), Gaps = 3/56 (5%)

Query: 2  VLKVD-LSCSKCRKKVKKVLCKFPQIQEQSFDEKTNTVTIKVVS--CSPEEIRDKL 54
           L V  ++CS C   VKK + K   + +     +T    +       S +++    
Sbjct: 6  TLSVPGMTCSACPITVKKAISKVEGVSKVDVTFETRQAVVTFDDAKTSVQKLTKAT 61

>d2qifa1 d.58.17.1 (A:1-69) Copper chaperone {Bacillus subtilis, CopZ [TaxId: 1423]} Length = 69

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Copper chaperone
species: Bacillus subtilis, CopZ [TaxId: 1423]

 Score = 34.0 bits (78), Expect = 0.001
 Identities = 14/64 (21%), Positives = 29/64 (45%), Gaps = 3/64 (4%)

Query: 3  LKVD-LSCSKCRKKVKKVLCKFPQIQEQSFDEKTNTVTIKVVS--CSPEEIRDKLCCKGE 59
          L+V+ +SC  C K V+  + +   +     + +   V +   +   S ++I D +  +G 
Sbjct: 6  LQVEGMSCQHCVKAVETSVGELDGVSAVHVNLEAGKVDVSFDADKVSVKDIADAIEDQGY 65

Query: 60 GVIK 63
           V K
Sbjct: 66 DVAK 69

>d1kvja_ d.58.17.1 (A:) Menkes copper-transporting ATPase {Human (Homo sapiens) [TaxId: 9606]} Length = 79

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Menkes copper-transporting ATPase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.0 bits (78), Expect = 0.002
 Identities = 7/56 (12%), Positives = 24/56 (42%), Gaps = 3/56 (5%)

Query: 2  VLKVD-LSCSKCRKKVKKVLCKFPQIQEQSFDEKTNTVTIKVVS--CSPEEIRDKL 54
           + V+ ++C+ C   +++ + K   +       +    TI       +P+ +++ +
Sbjct: 11 TISVEGMTCNSCVWTIEQQIGKVNGVHHIKVSLEEKNATIIYDPKLQTPKTLQEAI 66

>d1fe0a_ d.58.17.1 (A:) ATX1 metallochaperone protein (ATOX1) {Human (Homo sapiens), HAH1 [TaxId: 9606]} Length = 66

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: ATX1 metallochaperone protein (ATOX1)
species: Human (Homo sapiens), HAH1 [TaxId: 9606]

 Score = 32.5 bits (74), Expect = 0.004
 Identities = 13/52 (25%), Positives = 22/52 (42%), Gaps = 2/52 (3%)

Query: 3  LKVDLSCSKCRKKVKKVLCKFPQIQEQSFDEKTNTVTIKVVSCSPEEIRDKL 54
            VD++C  C + V +VL K   ++    D     V I+    S + +   L
Sbjct: 5  FSVDMTCGGCAEAVSRVLNKLGGVKYD-IDLPNKKVCIE-SEHSMDTLLATL 54

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	202
d1qupa2	72	Copper chaperone for superoxide dismutase, N-termi	99.65
d1cc8a_	72	ATX1 metallochaperone protein (ATOX1) {Baker's yea	99.64
d1fe0a_	66	ATX1 metallochaperone protein (ATOX1) {Human (Homo	99.63
d1cpza_	68	Copper chaperone {Enterococcus hirae [TaxId: 1354]	99.47
d2ggpb1	72	Copper transporter domain ccc2a {Baker's yeast (Sa	99.46
d1sb6a_	64	Copper chaperone {Synechocystis sp. pcc 6803, Scat	99.46
d2aw0a_	72	Menkes copper-transporting ATPase {Human (Homo sap	99.4
d1osda_	72	Mercuric ion binding protein MerP {Ralstonia metal	99.39
d1kvja_	79	Menkes copper-transporting ATPase {Human (Homo sap	99.38
d1q8la_	84	Menkes copper-transporting ATPase {Human (Homo sap	99.38
d2qifa1	69	Copper chaperone {Bacillus subtilis, CopZ [TaxId:	99.36
d1mwza_	73	Metal ion-transporting ATPase ZntA, N-terminal dom	99.33
d1p6ta2	79	Potential copper-translocating P-type ATPase CopA	99.32
d1p6ta1	72	Potential copper-translocating P-type ATPase CopA	99.31
d3bpda1	91	Uncharacterized protein AF1549 {Archaeoglobus fulg	94.8
d2raqa1	93	Uncharacterized protein MTH889 {Methanobacterium t	94.51
d1jdqa_	98	Hypothetical protein TM0983 {Thermotoga maritima [	80.33

>d1qupa2 d.58.17.1 (A:2-73) Copper chaperone for superoxide dismutase, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Copper chaperone for superoxide dismutase, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.65  E-value=1.9e-16  Score=111.50  Aligned_cols=64  Identities=22%  Similarity=0.406  Sum_probs=60.6

Q ss_pred             CEEEEcccChhhHHHHHHHHhcCCCceEEEEEcCCCEEEEEeecCCHHHHHHHHHhhcCCceeeEEEcC
Q 046486            1 MVLKVDLSCSKCRKKVKKVLCKFPQIQEQSFDEKTNTVTIKVVSCSPEEIRDKLCCKGEGVIKTIEILK   69 (202)
Q Consensus         1 mvLKV~M~C~gCakKIkKaL~ki~GV~~VeVDlk~~tVtV~G~~vdpekL~~kL~~KtGk~iK~aEIVs   69 (202)
                      ++|+|+|+|++|+++|+++|.+++||.+|+||+.+++|+|++ .+++++|+++|+ ++|   ++|.|.+
T Consensus         8 ~~f~V~M~C~~C~~~Iek~l~~~~gV~~v~vdl~~~~v~V~~-~~~~~~i~~~I~-~~G---~~A~l~g   71 (72)
T d1qupa2           8 ATYAIPMHCENCVNDIKACLKNVPGINSLNFDIEQQIMSVES-SVAPSTIINTLR-NCG---KDAIIRG   71 (72)
T ss_dssp             EEEECCCCSTTHHHHHHHHHTTCTTEEEEEEETTTTEEEEEE-SSCHHHHHHHHH-HTT---CCCEEEC
T ss_pred             EEEEEccCCHHHHHHHHHHHhcCCCeeEEEEECCCCEEEEEe-eCCHHHHHHHHH-HhC---CCEEEec
Confidence            478999999999999999999999999999999999999999 799999999999 899   8888865

>d1cc8a_ d.58.17.1 (A:) ATX1 metallochaperone protein (ATOX1) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: ATX1 metallochaperone protein (ATOX1)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.64  E-value=4.6e-16  Score=109.80  Aligned_cols=64  Identities=20%  Similarity=0.311  Sum_probs=59.7

Q ss_pred             EEEEcccChhhHHHHHHHHhcCC-CceEEEEEcCCCEEEEEeecCCHHHHHHHHHhhcCCceeeEEE
Q 046486            2 VLKVDLSCSKCRKKVKKVLCKFP-QIQEQSFDEKTNTVTIKVVSCSPEEIRDKLCCKGEGVIKTIEI   67 (202)
Q Consensus         2 vLKV~M~C~gCakKIkKaL~ki~-GV~~VeVDlk~~tVtV~G~~vdpekL~~kL~~KtGk~iK~aEI   67 (202)
                      +|+|+|||.+|+++|+++|.+++ ||.+|+||+.+++|+|.+ .+++++|+++|+ ++|+.+++.+.
T Consensus         7 ~f~V~MtC~~C~~~Ie~~L~~l~~gV~~v~v~~~~~~v~V~~-~~~~~~i~~~i~-~~G~~~~~~~~   71 (72)
T d1cc8a_           7 QFNVVMTCSGCSGAVNKVLTKLEPDVSKIDISLEKQLVDVYT-TLPYDFILEKIK-KTGKEVRSGKQ   71 (72)
T ss_dssp             EEEECCCSHHHHHHHHHHHHTTTTSEEEEEEETTTTEEEEEE-SSCHHHHHHHHH-TTSSCEEEEEE
T ss_pred             EEEECcCcHHHHHHHHHHHHcCcCceEEEEEECCCCEEEEee-cCCHHHHHHHHH-HHCCccCCcee
Confidence            68999999999999999999995 999999999999999999 799999999999 99977777664

>d1fe0a_ d.58.17.1 (A:) ATX1 metallochaperone protein (ATOX1) {Human (Homo sapiens), HAH1 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: ATX1 metallochaperone protein (ATOX1)
species: Human (Homo sapiens), HAH1 [TaxId: 9606]

Probab=99.63  E-value=3.6e-16  Score=108.70  Aligned_cols=62  Identities=27%  Similarity=0.425  Sum_probs=58.7

Q ss_pred             EEEEcccChhhHHHHHHHHhcCCCceEEEEEcCCCEEEEEeecCCHHHHHHHHHhhcCCceeeEEEcC
Q 046486            2 VLKVDLSCSKCRKKVKKVLCKFPQIQEQSFDEKTNTVTIKVVSCSPEEIRDKLCCKGEGVIKTIEILK   69 (202)
Q Consensus         2 vLKV~M~C~gCakKIkKaL~ki~GV~~VeVDlk~~tVtV~G~~vdpekL~~kL~~KtGk~iK~aEIVs   69 (202)
                      +|+|+|+|.+|+++|+++|++++|| +++||+.+++|+|++ +++++.|+++|+ ++|   +.+++++
T Consensus         4 ef~V~M~C~~C~~~I~~aL~~~~gv-~v~v~~~~~~v~V~~-~~~~~~i~~~I~-~~G---y~a~lig   65 (66)
T d1fe0a_           4 EFSVDMTCGGCAEAVSRVLNKLGGV-KYDIDLPNKKVCIES-EHSMDTLLATLK-KTG---KTVSYLG   65 (66)
T ss_dssp             EEEECCCSHHHHHHHHHHHHHHCSE-EEEEETTTTEEEEEE-SSCHHHHHHHHH-TTT---SCEEEEE
T ss_pred             EEEEccCchHHHHHHHHHHhcCCCc-EEEEEcCCCEEEEEe-eCCHHHHHHHHH-HhC---CeEEEee
Confidence            6999999999999999999999998 699999999999999 799999999999 899   8888875

>d1cpza_ d.58.17.1 (A:) Copper chaperone {Enterococcus hirae [TaxId: 1354]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Copper chaperone
species: Enterococcus hirae [TaxId: 1354]

Probab=99.47  E-value=1e-13  Score=95.81  Aligned_cols=63  Identities=14%  Similarity=0.336  Sum_probs=58.3

Q ss_pred             EEEE-cccChhhHHHHHHHHhcCCCceEEEEEcCCCEEEEEee--cCCHHHHHHHHHhhcCCceeeEEEc
Q 046486            2 VLKV-DLSCSKCRKKVKKVLCKFPQIQEQSFDEKTNTVTIKVV--SCSPEEIRDKLCCKGEGVIKTIEIL   68 (202)
Q Consensus         2 vLKV-~M~C~gCakKIkKaL~ki~GV~~VeVDlk~~tVtV~G~--~vdpekL~~kL~~KtGk~iK~aEIV   68 (202)
                      .|+| +|+|.+|+.+|+++|++++||.+++||+.+++|+|+.+  .++.++|+++|+ ++|   +.++++
T Consensus         3 el~V~GM~C~~C~~~Ie~~l~~~~GV~~v~V~~~~~~v~v~~d~~~~~~~~i~~~i~-~~G---y~a~vi   68 (68)
T d1cpza_           3 EFSVKGMSCNHCVARIEEAVGRISGVKKVKVQLKKEKAVVKFDEANVQATEICQAIN-ELG---YQAEVI   68 (68)
T ss_dssp             EEEESCCCSSSHHHHHHHHHHTSTTEEEEEEETTTTEEEEEECTTTCCHHHHHHHHH-TTS---SCEEEC
T ss_pred             EEEECCeEcHHHHHHHHHHHhcCCCcEEEEEECCCCEEEEEECCCCCCHHHHHHHHH-hhC---CCcEEC
Confidence            5899 89999999999999999999999999999999999865  579999999999 889   778775

>d2ggpb1 d.58.17.1 (B:1-72) Copper transporter domain ccc2a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Copper transporter domain ccc2a
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.46  E-value=4.4e-14  Score=98.64  Aligned_cols=65  Identities=18%  Similarity=0.362  Sum_probs=59.5

Q ss_pred             CEEEE-cccChhhHHHHHHHHhcCCCceEEEEEcCCCEEEEEee-cCCHHHHHHHHHhhcCCceeeEEEcC
Q 046486            1 MVLKV-DLSCSKCRKKVKKVLCKFPQIQEQSFDEKTNTVTIKVV-SCSPEEIRDKLCCKGEGVIKTIEILK   69 (202)
Q Consensus         1 mvLKV-~M~C~gCakKIkKaL~ki~GV~~VeVDlk~~tVtV~G~-~vdpekL~~kL~~KtGk~iK~aEIVs   69 (202)
                      ++|+| +|+|.+|+.+|+++|.+++||.+++||+.+++++|..+ .++.++|+++|+ ++|   +.++++.
T Consensus         4 v~l~V~GM~C~~C~~~Ie~~l~~~~gV~~v~V~~~~~~~~v~~~~~~~~~~i~~~i~-~~G---y~a~~~~   70 (72)
T d2ggpb1           4 VILAVHGMTCSACTNTINTQLRALKGVTKCDISLVTNECQVTYDNEVTADSIKEIIE-DCG---FDCEILR   70 (72)
T ss_dssp             EEEECTTCCSSTTTHHHHHHHTTSTTEEEEEECTTTCEEEEEECSSCCHHHHHHHHH-HTT---CCCEEEE
T ss_pred             EEEEECCcccHHHHHHHHHHHhcCCCceEEEEECCCCEEEEEECCCCCHHHHHHHHH-HhC---CCeEEcc
Confidence            47899 89999999999999999999999999999999999865 689999999999 889   7777764

>d1sb6a_ d.58.17.1 (A:) Copper chaperone {Synechocystis sp. pcc 6803, Scatx1 [TaxId: 1148]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Copper chaperone
species: Synechocystis sp. pcc 6803, Scatx1 [TaxId: 1148]

Probab=99.46  E-value=1.6e-14  Score=98.97  Aligned_cols=58  Identities=21%  Similarity=0.353  Sum_probs=54.5

Q ss_pred             CEEEE-cccChhhHHHHHHHHhcCCCceEEEEEcCCCEEEEEeecCCHHHHHHHHHhhcCC
Q 046486            1 MVLKV-DLSCSKCRKKVKKVLCKFPQIQEQSFDEKTNTVTIKVVSCSPEEIRDKLCCKGEG   60 (202)
Q Consensus         1 mvLKV-~M~C~gCakKIkKaL~ki~GV~~VeVDlk~~tVtV~G~~vdpekL~~kL~~KtGk   60 (202)
                      ++|+| +|+|.+|+.+|+++|.+++||.+|++|+.+++|+|++ .+++++|.++|. ++|+
T Consensus         3 ~~l~V~gM~C~~C~~~Ie~~l~~~~gv~~v~v~~~~~~v~v~~-~~~~~~i~~~i~-~~GY   61 (64)
T d1sb6a_           3 IQLTVPTIACEACAEAVTKAVQNEDAQATVQVDLTSKKVTITS-ALGEEQLRTAIA-SAGH   61 (64)
T ss_dssp             EEEECTTTTSSSCTHHHHHHHHHHCTTCEEEEETTTTEEEEES-SSCHHHHHHHHH-HHCC
T ss_pred             EEEEECCccchhHHHHHHHHHhcCCCeeEEEccCCCCEEEEcc-CCCHHHHHHHHH-HcCC
Confidence            36788 8999999999999999999999999999999999999 799999999999 8883

>d2aw0a_ d.58.17.1 (A:) Menkes copper-transporting ATPase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Menkes copper-transporting ATPase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=4.8e-13  Score=92.94  Aligned_cols=64  Identities=17%  Similarity=0.342  Sum_probs=58.3

Q ss_pred             CEEEE-cccChhhHHHHHHHHhcCCCceEEEEEcCCCEEEEEee--cCCHHHHHHHHHhhcCCceeeEEEc
Q 046486            1 MVLKV-DLSCSKCRKKVKKVLCKFPQIQEQSFDEKTNTVTIKVV--SCSPEEIRDKLCCKGEGVIKTIEIL   68 (202)
Q Consensus         1 mvLKV-~M~C~gCakKIkKaL~ki~GV~~VeVDlk~~tVtV~G~--~vdpekL~~kL~~KtGk~iK~aEIV   68 (202)
                      ++|+| +|+|.+|+.+|+++|.+++||.+++||+.+++|+|..+  .++.+.|+++|+ ++|   +.+.+.
T Consensus         5 ~~l~V~GM~C~~C~~~Ie~~l~~~~GV~~v~v~~~~~~v~v~~d~~~~~~~~i~~~i~-~~G---y~a~l~   71 (72)
T d2aw0a_           5 TVINIDGMTCNSCVQSIEGVISKKPGVKSIRVSLANSNGTVEYDPLLTSPETLRGAIE-DMG---FDATLS   71 (72)
T ss_dssp             EEEEEECCCSHHHHHHHHHHHHTSTTCCCEEEETTTTEEEEEECTTTCCHHHHHHHHH-HHT---SEEEEC
T ss_pred             EEEEECCcccHHHHHHHHHHHhcCCCcEEEEEECCCCEEEEEECCCCCCHHHHHHHHH-hhC---CCcEeC
Confidence            37999 89999999999999999999999999999999999864  578999999999 889   777764

>d1osda_ d.58.17.1 (A:) Mercuric ion binding protein MerP {Ralstonia metallidurans CH34 [TaxId: 266264]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Mercuric ion binding protein MerP
species: Ralstonia metallidurans CH34 [TaxId: 266264]

Probab=99.39  E-value=5.7e-13  Score=92.85  Aligned_cols=64  Identities=17%  Similarity=0.296  Sum_probs=58.1

Q ss_pred             CEEEE-cccChhhHHHHHHHHhcCCCceEEEEEcCCCEEEEEee--cCCHHHHHHHHHhhcCCceeeEEEc
Q 046486            1 MVLKV-DLSCSKCRKKVKKVLCKFPQIQEQSFDEKTNTVTIKVV--SCSPEEIRDKLCCKGEGVIKTIEIL   68 (202)
Q Consensus         1 mvLKV-~M~C~gCakKIkKaL~ki~GV~~VeVDlk~~tVtV~G~--~vdpekL~~kL~~KtGk~iK~aEIV   68 (202)
                      ++|+| +|+|.+|+.+|+++|.+++||.+++||+.+++|+|+.+  .++.++|+++|+ .+|   +.+++.
T Consensus         5 ~~l~V~Gm~C~~C~~~Ie~~l~~~~gV~~v~v~~~~~~~~v~~~~~~~~~~~i~~~i~-~~G---y~a~v~   71 (72)
T d1osda_           5 VTLSVPGMTCSACPITVKKAISKVEGVSKVDVTFETRQAVVTFDDAKTSVQKLTKATA-DAG---YPSSVK   71 (72)
T ss_dssp             EEEECTTCCSTTHHHHHHHHHHTSTTEEEEEEETTTTEEEEEEETTTCCHHHHHHHHH-HTT---CCCEEC
T ss_pred             EEEEECCcccHHHHHHHHHHHHcCCCcEEEEEEcCCCEEEEEECCCCCCHHHHHHHHH-hcC---CCeEeC
Confidence            46899 89999999999999999999999999999999999865  488999999999 889   777653

>d1kvja_ d.58.17.1 (A:) Menkes copper-transporting ATPase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Menkes copper-transporting ATPase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=9.2e-13  Score=93.26  Aligned_cols=67  Identities=15%  Similarity=0.292  Sum_probs=61.2

Q ss_pred             CEEEE-cccChhhHHHHHHHHhcCCCceEEEEEcCCCEEEEEee--cCCHHHHHHHHHhhcCCceeeEEEcCCC
Q 046486            1 MVLKV-DLSCSKCRKKVKKVLCKFPQIQEQSFDEKTNTVTIKVV--SCSPEEIRDKLCCKGEGVIKTIEILKPD   71 (202)
Q Consensus         1 mvLKV-~M~C~gCakKIkKaL~ki~GV~~VeVDlk~~tVtV~G~--~vdpekL~~kL~~KtGk~iK~aEIVsp~   71 (202)
                      ++|.| +|+|.+|+.+|+++|++++||.+++||+.+++|+|+.+  .++.+.|+++|+ ++|   +.+.+.+++
T Consensus        10 ~~l~V~gm~C~~C~~~ie~~l~~~~gv~~v~v~~~~~~v~v~~d~~~~~~~~i~~~i~-~~G---Y~~~~~~~d   79 (79)
T d1kvja_          10 VTISVEGMTCNSCVWTIEQQIGKVNGVHHIKVSLEEKNATIIYDPKLQTPKTLQEAID-DMG---FDAVIHNPD   79 (79)
T ss_dssp             EEEEEESCCSTHHHHHHHHHHHTTTTCSEEEEETTTTEEEEEECTTTCCHHHHHHHHH-HHT---CEEEECSCC
T ss_pred             EEEEECCeecHHHHHHHHHHHhcCCCceEEEEECCCCEEEEEECCCCCCHHHHHHHHH-hcC---CCcEeCCCC
Confidence            47899 89999999999999999999999999999999999964  489999999999 889   888887663

>d1q8la_ d.58.17.1 (A:) Menkes copper-transporting ATPase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Menkes copper-transporting ATPase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=4.7e-13  Score=96.19  Aligned_cols=68  Identities=18%  Similarity=0.264  Sum_probs=61.6

Q ss_pred             CEEEE-cccChhhHHHHHHHHhcCCCceEEEEEcCCCEEEEEee--cCCHHHHHHHHHhhcCCceeeEEEcCCCC
Q 046486            1 MVLKV-DLSCSKCRKKVKKVLCKFPQIQEQSFDEKTNTVTIKVV--SCSPEEIRDKLCCKGEGVIKTIEILKPDE   72 (202)
Q Consensus         1 mvLKV-~M~C~gCakKIkKaL~ki~GV~~VeVDlk~~tVtV~G~--~vdpekL~~kL~~KtGk~iK~aEIVsp~k   72 (202)
                      +.|+| +|+|.+|+.+|+++|.+++||.+++||+.+++|+|+.+  .++.+.|.++|+ ++|   +.+.+....+
T Consensus        11 v~l~V~GMtC~~C~~~Ie~~l~~~~GV~~v~vn~~~~~v~v~~~~~~~~~~~i~~~I~-~~G---y~a~~~~~~k   81 (84)
T d1q8la_          11 LKMKVEGMTCHSCTSTIEGKIGKLQGVQRIKVSLDNQEATIVYQPHLISVEEMKKQIE-AMG---FPAFVKKQPK   81 (84)
T ss_dssp             EEEEECCTTTCSSCHHHHHHHHTCTTEEEEEECSTTTEEEEEECTTTCCHHHHHHHHH-HTT---CCEECSCCTT
T ss_pred             EEEEECCeEcHHHHHHHHHHHhcCCCceEEEEECCCCEEceeecccccCHHHHHHHHH-HhC---CccEEcCCcc
Confidence            46899 89999999999999999999999999999999999865  588999999999 899   8888877554

>d2qifa1 d.58.17.1 (A:1-69) Copper chaperone {Bacillus subtilis, CopZ [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Copper chaperone
species: Bacillus subtilis, CopZ [TaxId: 1423]

Probab=99.36  E-value=1.7e-12  Score=89.58  Aligned_cols=58  Identities=19%  Similarity=0.331  Sum_probs=54.3

Q ss_pred             EEEE-cccChhhHHHHHHHHhcCCCceEEEEEcCCCEEEEEee--cCCHHHHHHHHHhhcCC
Q 046486            2 VLKV-DLSCSKCRKKVKKVLCKFPQIQEQSFDEKTNTVTIKVV--SCSPEEIRDKLCCKGEG   60 (202)
Q Consensus         2 vLKV-~M~C~gCakKIkKaL~ki~GV~~VeVDlk~~tVtV~G~--~vdpekL~~kL~~KtGk   60 (202)
                      +|+| +|+|.+|+.+|+++|++++||.+++||+.+++|+|+.+  .++.++|.++|+ ++|+
T Consensus         5 tl~V~Gm~C~~C~~~Ie~~l~~~~GV~~v~v~~~~~~v~v~~d~~~~~~~~i~~~i~-~~Gy   65 (69)
T d2qifa1           5 TLQVEGMSCQHCVKAVETSVGELDGVSAVHVNLEAGKVDVSFDADKVSVKDIADAIE-DQGY   65 (69)
T ss_dssp             EEEEECCCSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEECTTTCCHHHHHHHHH-HTTC
T ss_pred             EEEECCccCHHHHHHHHHHHhcCCCceEEEEECCCCEEEEEECCCCCCHHHHHHHHH-HhCC
Confidence            6899 89999999999999999999999999999999999975  479999999999 8893

>d1mwza_ d.58.17.1 (A:) Metal ion-transporting ATPase ZntA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Metal ion-transporting ATPase ZntA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.33  E-value=1.4e-12  Score=91.04  Aligned_cols=59  Identities=15%  Similarity=0.268  Sum_probs=54.2

Q ss_pred             EEEE-cccChhhHHHHHHHHhcCCCceEEEEEcCCCEEEEEeecCCHHHHHHHHHhhcCCc
Q 046486            2 VLKV-DLSCSKCRKKVKKVLCKFPQIQEQSFDEKTNTVTIKVVSCSPEEIRDKLCCKGEGV   61 (202)
Q Consensus         2 vLKV-~M~C~gCakKIkKaL~ki~GV~~VeVDlk~~tVtV~G~~vdpekL~~kL~~KtGk~   61 (202)
                      +|+| +|+|.+|+.+|+++|.+++||.+++||+.+++|+|..+....++|+++|. ++|+.
T Consensus         6 ~~~V~Gm~C~~C~~~Ie~~l~~~~gV~~v~v~~~~~~~~v~~~~~~~~~i~~~i~-~~GY~   65 (73)
T d1mwza_           6 SWKVSGMDCAACARKVENAVRQLAGVNQVQVLFATEKLVVDADNDIRAQVESALQ-KAGYS   65 (73)
T ss_dssp             EEECTTCCSHHHHHHHHHHHHTSSSEEEEEEETTTTEEEEEESSCCHHHHHHHHH-HHTCC
T ss_pred             EEEECCcCCHHHHHHHHHHHhcCCCceEEEEECCCCEEEEEECCCCHHHHHHHHH-HcCCc
Confidence            6899 89999999999999999999999999999999999986566889999999 88943

>d1p6ta2 d.58.17.1 (A:73-151) Potential copper-translocating P-type ATPase CopA (YvgX) {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Potential copper-translocating P-type ATPase CopA (YvgX)
species: Bacillus subtilis [TaxId: 1423]

Probab=99.32  E-value=1.8e-12  Score=91.68  Aligned_cols=67  Identities=15%  Similarity=0.329  Sum_probs=60.4

Q ss_pred             CEEEE-cccChhhHHHHHHHHhcCCCceEEEEEcCCCEEEEEee--cCCHHHHHHHHHhhcCCceeeEEEcCCC
Q 046486            1 MVLKV-DLSCSKCRKKVKKVLCKFPQIQEQSFDEKTNTVTIKVV--SCSPEEIRDKLCCKGEGVIKTIEILKPD   71 (202)
Q Consensus         1 mvLKV-~M~C~gCakKIkKaL~ki~GV~~VeVDlk~~tVtV~G~--~vdpekL~~kL~~KtGk~iK~aEIVsp~   71 (202)
                      +.|+| +|+|.+|+.+|+++|.+++||.++.||+.+++|+|+.+  ..+.++|+++|+ .+|   +.+.+.+..
T Consensus         4 ~~~~V~Gm~C~~C~~~Ie~~l~~~~gV~~v~v~~~~~~~~v~~~~~~~~~~~i~~~i~-~~G---y~~~~~~~~   73 (79)
T d1p6ta2           4 AEFDIEGMTCAACANRIEKRLNKIEGVANAPVNFALETVTVEYNPKEASVSDLKEAVD-KLG---YKLKLKGEQ   73 (79)
T ss_dssp             EEEEESSCCSSSHHHHHHHHHTTSSSEEECCEETTTTEEEEEECTTTCCHHHHHHHHH-HHT---CCEEESCSS
T ss_pred             EEEEECCcccHHHHHHHHHHHhcCCCcEEEEEEeCCCEEEEEECCCCCCHHHHHHHHH-HHC---CceEECCcc
Confidence            36899 89999999999999999999999999999999999864  579999999999 889   788876543

>d1p6ta1 d.58.17.1 (A:1-72) Potential copper-translocating P-type ATPase CopA (YvgX) {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Potential copper-translocating P-type ATPase CopA (YvgX)
species: Bacillus subtilis [TaxId: 1423]

Probab=99.31  E-value=2.4e-12  Score=89.36  Aligned_cols=59  Identities=20%  Similarity=0.420  Sum_probs=54.4

Q ss_pred             CEEEE-cccChhhHHHHHHHHhcCCCceEEEEEcCCCEEEEEee--cCCHHHHHHHHHhhcCC
Q 046486            1 MVLKV-DLSCSKCRKKVKKVLCKFPQIQEQSFDEKTNTVTIKVV--SCSPEEIRDKLCCKGEG   60 (202)
Q Consensus         1 mvLKV-~M~C~gCakKIkKaL~ki~GV~~VeVDlk~~tVtV~G~--~vdpekL~~kL~~KtGk   60 (202)
                      ++|+| +|+|.+|+.+|+++|.+++||.+++||+.+++++|+.+  ..+.+.|.++|+ ++|+
T Consensus         8 ~~l~V~Gm~C~~C~~~Ie~~l~~~~gV~~v~v~~~~~~~~v~~d~~~~~~~~i~~~i~-~~Gy   69 (72)
T d1p6ta1           8 IAMQVSGMTCAACAARIEKGLKRMPGVTDANVNLATETVNVIYDPAETGTAAIQEKIE-KLGY   69 (72)
T ss_dssp             EEEEEESCCSSHHHHHHHHHHTTSSSEEEEEEEGGGTEEEEEECTTTSCHHHHHHHHH-HHTC
T ss_pred             EEEEECCeecHHHHHHHHHHHHcCCCcEEEEEEcCCCEEEEEECCCCCCHHHHHHHHH-HhCC
Confidence            46899 89999999999999999999999999999999999854  578999999999 8883

>d3bpda1 d.58.61.1 (A:1-91) Uncharacterized protein AF1549 {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: MTH889-like
family: MTH889-like
domain: Uncharacterized protein AF1549
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=94.80  E-value=0.022  Score=41.06  Aligned_cols=59  Identities=17%  Similarity=0.209  Sum_probs=46.1

Q ss_pred             HHHHHHHhcCCCceEEE-----EEcCCC--EEEEEeecCCHHHHHHHHHhhcCCceeeEEEcCCCCC
Q 046486           14 KKVKKVLCKFPQIQEQS-----FDEKTN--TVTIKVVSCSPEEIRDKLCCKGEGVIKTIEILKPDEK   73 (202)
Q Consensus        14 kKIkKaL~ki~GV~~Ve-----VDlk~~--tVtV~G~~vdpekL~~kL~~KtGk~iK~aEIVsp~kp   73 (202)
                      -.+.+.|.+++||..|.     +|.++.  ++||.|+++|-++|.++|+ ..|..|++|.-|..++.
T Consensus        20 ~~~A~~l~~~~gV~~VnitV~EiD~~t~~i~ItiEG~~idyd~i~~~IE-~~Gg~IHSIDeV~aG~~   85 (91)
T d3bpda1          20 IVFALKLSELENVDGVNIHLSEIDQATENIKITILGNNLDYEQIKGVIE-DMGGVIHSVDEVVAGKI   85 (91)
T ss_dssp             HHHHHHHHTSTTEEEEEEEEEEECSSEEEEEEEEEEEEECHHHHHHHHH-TTTCEEEEEEEEEEESS
T ss_pred             HHHHHHHhccCCcceEEEEEEEecccceEEEEEEEecCCCHHHHHHHHH-HcCCeEEEEhheeecce
Confidence            34788999999988654     344433  3466787899999999999 88889999998877654

>d2raqa1 d.58.61.1 (A:3-95) Uncharacterized protein MTH889 {Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: MTH889-like
family: MTH889-like
domain: Uncharacterized protein MTH889
species: Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=94.51  E-value=0.014  Score=42.34  Aligned_cols=60  Identities=18%  Similarity=0.232  Sum_probs=47.1

Q ss_pred             HHHHHHHHhcCCCceEEE-----EEcCCCE--EEEEeecCCHHHHHHHHHhhcCCceeeEEEcCCCCC
Q 046486           13 RKKVKKVLCKFPQIQEQS-----FDEKTNT--VTIKVVSCSPEEIRDKLCCKGEGVIKTIEILKPDEK   73 (202)
Q Consensus        13 akKIkKaL~ki~GV~~Ve-----VDlk~~t--VtV~G~~vdpekL~~kL~~KtGk~iK~aEIVsp~kp   73 (202)
                      .-.+.+.|.+++||..|.     +|.++..  +||.|+++|-+.|.++|+ ..|..|.+|.-|..++.
T Consensus        19 i~e~A~~l~~~~gV~~VnitV~EiD~et~~i~itiEG~~idyd~i~~~IE-~~Gg~IHSIDeV~aG~~   85 (93)
T d2raqa1          19 IPEYAKYLSELRGVEGVNITLMEIDKETENIKVTIQGNDLDFDEITRAIE-SYGGSIHSVDEVVAGRT   85 (93)
T ss_dssp             HHHHHHHHHHSTTCCEEEEEEEEECSSCEEEEEEEECSSCCHHHHHHHHH-HTTCEEEEEEEEEEESS
T ss_pred             HHHHHHHHhccCCcceEEEEEEEecccceEEEEEEEecCCCHHHHHHHHH-HcCCeEEEEeeeeecce
Confidence            456788999999987654     4555444  456687899999999999 78889999998887654

>d1jdqa_ d.68.3.3 (A:) Hypothetical protein TM0983 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: IF3-like
superfamily: SirA-like
family: SirA-like
domain: Hypothetical protein TM0983
species: Thermotoga maritima [TaxId: 2336]

Probab=80.33  E-value=4  Score=28.21  Aligned_cols=56  Identities=20%  Similarity=0.184  Sum_probs=40.1

Q ss_pred             EEEE-cccChhhHHHHHHHHhcCCCceEEEEEcCCCEEEEEee-cCCHHHHHHHHHhhcCCceeeEEE
Q 046486            2 VLKV-DLSCSKCRKKVKKVLCKFPQIQEQSFDEKTNTVTIKVV-SCSPEEIRDKLCCKGEGVIKTIEI   67 (202)
Q Consensus         2 vLKV-~M~C~gCakKIkKaL~ki~GV~~VeVDlk~~tVtV~G~-~vdpekL~~kL~~KtGk~iK~aEI   67 (202)
                      +|.+ ++.|..-.-+++++|.++.         ..+.++|..+ ....+.|.+.++ +.|..+.+++-
T Consensus        28 ~LD~rG~~CP~Pll~~kkal~~l~---------~Ge~L~V~~dd~~a~~dI~~~~~-~~g~~i~~~~~   85 (98)
T d1jdqa_          28 TLDVRGEVCPVPDVETKRALQNMK---------PGEILEVWIDYPMSKERIPETVK-KLGHEVLEIEE   85 (98)
T ss_dssp             EEECSSCCSSHHHHHHHHHHHTCC---------TTCEEEEEESSCTHHHHHHHHHH-HSSCCEEEEEE
T ss_pred             eEECCCCcCCHHHHHHHHHHHcCC---------CCCEEEEEeCCcchHHHHHHHHH-HcCCEEEEEEE
Confidence            4666 8999999999999999986         3456666654 345667777777 88855544443