Citrus Sinensis ID: 046487

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100------
Protein Sequence
MAIRKSSKLPQAAVLKQILKRCSSLGKKQHSSYDEDGLPLDVPKGHFAVYVGEHRSRYIVPISFLSHPEFQCLLRQAEEEFGFDHDMGLTIPCEEVVFRSLTSMLR
Secondary Structure (PSIPRED)
ccccccccHHHHHHHHHHHHHHHcccccccccccccccccccccccEEEEEccccEEEEEEcccccHHHHHHHHHHHHHHccccccccEEEcccHHHHHHHHHHHc
Secondary Structure Prediction (SSPRO)
ccccccccHHHHHHHHHHHHHHHHHHHHHccccccccccccccccEEEEEEcccccEEEEEEHHcccHHHHHHHHHHHHHHccccccccEccccHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mairkssklpQAAVLKQILKRCSSlgkkqhssydedglpldvpkghfavyvgehrsryivpisflshpEFQCLLRQAEeefgfdhdmgltipcEEVVFRSLTSMLR
Flexible Loop (DISEMBL)
mairkssklpqaaVLKQILKRCSSLGKKQHSSYDEDGLPLDVPKGHFAVYVGEHRSRYIVPISFLSHPEFQCLLRQAEEEFGFDHDMGLTIPCEEVVFRSLTSMLR
Low Complexity Region (SEG)
MAIRKSSKLPQAAVLKQILKRCSSLGKKQHSSYDEDGLPLDVPKGHFAVYVGEHRSRYIVPISFLSHPEFQCLLRQAEEEFGFDHDMGLTIPCEEVVFRSLTSMLR
Disordered region (IsUnstruct)
*************************************LPLDVPKGHFAVYVGEHRSRYIVPISFLSHPEFQCLLRQAEEEFGFDHDMGLTIPCEEVVFRS******
Disordered Region (DISOPRED)
*********************************************HFAVYVGEHRSRYIVPISFLSHPEFQCLLRQAEEEFGFDHDMGLTIPCEEVVFRSLTSMLR
Disordered Region (DISEMBL)
**********QAAVLKQILKRCS**********DEDGLPLDVPKGHFAVYVGEHRSRYIVPISFLSHPEFQCLLRQAEEEFGFDHDMGLTIPCEEVVFRSLTSMLR
Disordered Region (DISPRO)
*****SSKLPQAAVLKQILKRCSSLGKKQ*********PLDVPKGHFAVYVGEHRSRYIVPISFLSHPEFQCLLRQAEEEFGFDHDMGLTIPCEEVVFRSLTSMLR
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAIRKSSKLPQAAVLKQILKRCSSLGKKQHSSYDEDGLPLDVPKGHFAVYVGEHRSRYIVPISFLSHPEFQCLLRQAEEEFGFDHDMGLTIPCEEVVFRSLTSMLR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	106	2.2.26 [Sep-21-2011]
P33081	82	Auxin-induced protein 15A	no	no	0.622	0.804	0.611	4e-18
P33082	82	Auxin-induced protein X15	no	no	0.632	0.817	0.573	2e-17
P32295	92	Indole-3-acetic acid-indu	N/A	no	0.622	0.717	0.611	2e-17
P33080	92	Auxin-induced protein X10	no	no	0.764	0.880	0.494	6e-17
P33083	90	Auxin-induced protein 6B	no	no	0.811	0.955	0.482	1e-16
P33079	93	Auxin-induced protein 10A	no	no	0.632	0.720	0.573	2e-16

>sp|P33081|AX15A_SOYBN Auxin-induced protein 15A OS=Glycine max PE=2 SV=1

 Score = 89.7 bits (221), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 41/67 (61%), Positives = 51/67 (76%), Gaps = 1/67 (1%)

Query: 41  DVPKGHFAVYVGEHRSRYIVPISFLSHPEFQCLLRQAEEEFGFDHDM-GLTIPCEEVVFR 99
           D PKG+ AVYVGE   R+++P+S+L+ P FQ LL QAEEEFG+DH M GLTIPC E VF+
Sbjct: 16  DAPKGYLAVYVGEKLKRFVIPVSYLNQPSFQDLLSQAEEEFGYDHPMGGLTIPCSEDVFQ 75

Query: 100 SLTSMLR 106
            +TS L 
Sbjct: 76  CITSCLN 82

Glycine max (taxid: 3847)

>sp|P33082|AXX15_SOYBN Auxin-induced protein X15 OS=Glycine max PE=2 SV=1

 Score = 87.8 bits (216), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 39/68 (57%), Positives = 51/68 (75%), Gaps = 1/68 (1%)

Query: 40  LDVPKGHFAVYVGEHRSRYIVPISFLSHPEFQCLLRQAEEEFGFDHDM-GLTIPCEEVVF 98
           +D PKG+ AVYVGE   R+++P+S+++ P FQ LL QAEEEFG+DH M GLTIPC E VF
Sbjct: 15  VDAPKGYLAVYVGEKMKRFVIPVSYMNQPSFQDLLTQAEEEFGYDHPMGGLTIPCSEEVF 74

Query: 99  RSLTSMLR 106
           + +T  L 
Sbjct: 75  QRITCCLN 82

Glycine max (taxid: 3847)

>sp|P32295|ARG7_VIGRR Indole-3-acetic acid-induced protein ARG7 OS=Vigna radiata var. radiata GN=ARG7 PE=2 SV=1

 Score = 87.8 bits (216), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 41/67 (61%), Positives = 52/67 (77%), Gaps = 1/67 (1%)

Query: 40  LDVPKGHFAVYVGEHRSRYIVPISFLSHPEFQCLLRQAEEEFGFDHDM-GLTIPCEEVVF 98
           LD PKG+ AVYVGE+  R+++P+S L+ P FQ LL QAEEEFG+DH M GLTIPC E +F
Sbjct: 23  LDAPKGYLAVYVGENMKRFVIPVSHLNQPLFQDLLSQAEEEFGYDHPMGGLTIPCSEDLF 82

Query: 99  RSLTSML 105
           + +TS L
Sbjct: 83  QHITSCL 89

Vigna radiata var. radiata (taxid: 3916)

>sp|P33080|AX10A_SOYBN Auxin-induced protein X10A OS=Glycine max PE=2 SV=1

 Score = 85.9 bits (211), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 43/87 (49%), Positives = 59/87 (67%), Gaps = 6/87 (6%)

Query: 21  RCSSLGKKQHSSYDEDGLPLDVPKGHFAVYVGEHRSRYIVPISFLSHPEFQCLLRQAEEE 80
           R +S+   Q SS       ++VPKG+  VYVG+   R+++P+S+L+ P FQ LL QAEEE
Sbjct: 9   RKTSIAANQASSKS-----VEVPKGYLVVYVGDKMRRFLIPVSYLNQPSFQDLLNQAEEE 63

Query: 81  FGFDHDM-GLTIPCEEVVFRSLTSMLR 106
           FG+DH M GLTIPC+E  F ++TS L 
Sbjct: 64  FGYDHPMGGLTIPCKEDEFLTVTSHLN 90

Glycine max (taxid: 3847)

>sp|P33083|AX6B_SOYBN Auxin-induced protein 6B OS=Glycine max PE=2 SV=1

 Score = 84.7 bits (208), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 42/87 (48%), Positives = 56/87 (64%), Gaps = 1/87 (1%)

Query: 21  RCSSLGKKQHSSYDEDGLPLDVPKGHFAVYVGEHRSRYIVPISFLSHPEFQCLLRQAEEE 80
           R   + K   S+       +DV KG+ AVYVGE   R+++P+S+L+ P FQ LL QAEEE
Sbjct: 4   RLPGIRKASFSANQASSKAVDVEKGYLAVYVGEKMRRFVIPVSYLNKPSFQDLLSQAEEE 63

Query: 81  FGFDH-DMGLTIPCEEVVFRSLTSMLR 106
           FG+ H + GLTIPC E VF+ +TS L 
Sbjct: 64  FGYHHPNGGLTIPCSEDVFQHITSFLN 90

Glycine max (taxid: 3847)

>sp|P33079|A10A5_SOYBN Auxin-induced protein 10A5 OS=Glycine max PE=2 SV=1

 Score = 84.0 bits (206), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 39/68 (57%), Positives = 52/68 (76%), Gaps = 1/68 (1%)

Query: 40  LDVPKGHFAVYVGEHRSRYIVPISFLSHPEFQCLLRQAEEEFGFDHDM-GLTIPCEEVVF 98
           +DVPKG+ AVYVG+   R+ +P+S+L+ P FQ LL QAEEEFG+DH M GLTIPC+E  F
Sbjct: 24  VDVPKGYAAVYVGDKMRRFTIPVSYLNEPSFQELLSQAEEEFGYDHPMGGLTIPCKEEEF 83

Query: 99  RSLTSMLR 106
            ++T+ L 
Sbjct: 84  LNVTAHLN 91

Glycine max (taxid: 3847)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	106
225427810	104	PREDICTED: auxin-induced protein 15A [Vi	0.981	1.0	0.915	2e-49
224080516	104	SAUR family protein [Populus trichocarpa	0.981	1.0	0.896	2e-47
224103303	104	SAUR family protein [Populus trichocarpa	0.981	1.0	0.896	2e-47
407260773	104	SAUR family protein [Populus tomentosa]	0.981	1.0	0.877	2e-46
356516834	106	PREDICTED: auxin-induced protein 15A-lik	0.981	0.981	0.850	6e-45
359492215	104	PREDICTED: indole-3-acetic acid-induced	0.981	1.0	0.830	2e-44
388517167	105	unknown [Lotus japonicus]	0.981	0.990	0.847	2e-44
351734422	106	uncharacterized protein LOC100306339 [Gl	0.981	0.981	0.841	5e-44
356531583	104	PREDICTED: auxin-induced protein 15A-lik	0.981	1.0	0.820	6e-44
297839445	108	hypothetical protein ARALYDRAFT_476705 [	1.0	0.981	0.777	2e-43

>gi|225427810|ref|XP_002270504.1| PREDICTED: auxin-induced protein 15A [Vitis vinifera] gi|147856535|emb|CAN82489.1| hypothetical protein VITISV_036184 [Vitis vinifera]

 Score =  199 bits (506), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 97/106 (91%), Positives = 102/106 (96%), Gaps = 2/106 (1%)

Query: 1   MAIRKSSKLPQAAVLKQILKRCSSLGKKQHSSYDEDGLPLDVPKGHFAVYVGEHRSRYIV 60
           MAIRKS+KLPQ AVLKQILKRCSSLGKK  + YDEDGLPLDVPKGHFAVYVGE+RSRYIV
Sbjct: 1   MAIRKSNKLPQTAVLKQILKRCSSLGKK--NGYDEDGLPLDVPKGHFAVYVGENRSRYIV 58

Query: 61  PISFLSHPEFQCLLRQAEEEFGFDHDMGLTIPCEEVVFRSLTSMLR 106
           PISFLSHPEFQCLL++AEEEFGFDHDMGLTIPCEEVVFRSLTSMLR
Sbjct: 59  PISFLSHPEFQCLLQRAEEEFGFDHDMGLTIPCEEVVFRSLTSMLR 104

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224080516|ref|XP_002306147.1| SAUR family protein [Populus trichocarpa] gi|222849111|gb|EEE86658.1| SAUR family protein [Populus trichocarpa]

 Score =  192 bits (488), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 95/106 (89%), Positives = 99/106 (93%), Gaps = 2/106 (1%)

Query: 1   MAIRKSSKLPQAAVLKQILKRCSSLGKKQHSSYDEDGLPLDVPKGHFAVYVGEHRSRYIV 60
           MAIRKS KLPQ AVLKQILKRCSSLGKK    YD+DGLPLDVPKGHFAVYVGE+RSRYIV
Sbjct: 1   MAIRKSHKLPQTAVLKQILKRCSSLGKKH--GYDDDGLPLDVPKGHFAVYVGENRSRYIV 58

Query: 61  PISFLSHPEFQCLLRQAEEEFGFDHDMGLTIPCEEVVFRSLTSMLR 106
           PISFLSHPEFQ LL++AEEEFGFDHDMGLTIPCEEVVFRSLTSMLR
Sbjct: 59  PISFLSHPEFQSLLQRAEEEFGFDHDMGLTIPCEEVVFRSLTSMLR 104

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224103303|ref|XP_002313002.1| SAUR family protein [Populus trichocarpa] gi|118484681|gb|ABK94211.1| unknown [Populus trichocarpa] gi|222849410|gb|EEE86957.1| SAUR family protein [Populus trichocarpa] gi|407260775|gb|AFT92006.1| SAUR family protein [Populus alba x Populus tremula var. glandulosa] gi|407260799|gb|AFT92018.1| SAUR family protein [Populus alba x Populus tremula var. glandulosa]

 Score =  192 bits (488), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 95/106 (89%), Positives = 99/106 (93%), Gaps = 2/106 (1%)

Query: 1   MAIRKSSKLPQAAVLKQILKRCSSLGKKQHSSYDEDGLPLDVPKGHFAVYVGEHRSRYIV 60
           MAIRKS KLPQ AVLKQILKRCSSLGKK    YD+DGLPLDVPKGHFAVYVGE+RSRYIV
Sbjct: 1   MAIRKSQKLPQTAVLKQILKRCSSLGKKH--GYDDDGLPLDVPKGHFAVYVGENRSRYIV 58

Query: 61  PISFLSHPEFQCLLRQAEEEFGFDHDMGLTIPCEEVVFRSLTSMLR 106
           PISFLSHPEFQ LL++AEEEFGFDHDMGLTIPCEEVVFRSLTSMLR
Sbjct: 59  PISFLSHPEFQFLLQRAEEEFGFDHDMGLTIPCEEVVFRSLTSMLR 104

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|407260773|gb|AFT92005.1| SAUR family protein [Populus tomentosa] gi|407260797|gb|AFT92017.1| SAUR family protein [Populus tomentosa]

 Score =  189 bits (480), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 93/106 (87%), Positives = 98/106 (92%), Gaps = 2/106 (1%)

Query: 1   MAIRKSSKLPQAAVLKQILKRCSSLGKKQHSSYDEDGLPLDVPKGHFAVYVGEHRSRYIV 60
           MAIRKS KLPQ AVLKQILKRCSSLGKK    YD+DGLPLDVPKGHFAVYVGE+RSRYIV
Sbjct: 1   MAIRKSQKLPQTAVLKQILKRCSSLGKKH--GYDDDGLPLDVPKGHFAVYVGENRSRYIV 58

Query: 61  PISFLSHPEFQCLLRQAEEEFGFDHDMGLTIPCEEVVFRSLTSMLR 106
           PISFLSHP+FQ LL++AEEEFGFDHDMGLT PCEEVVFRSLTSMLR
Sbjct: 59  PISFLSHPQFQFLLQRAEEEFGFDHDMGLTFPCEEVVFRSLTSMLR 104

Source: Populus tomentosa

Species: Populus tomentosa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356516834|ref|XP_003527098.1| PREDICTED: auxin-induced protein 15A-like [Glycine max]

 Score =  184 bits (467), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 91/107 (85%), Positives = 98/107 (91%), Gaps = 3/107 (2%)

Query: 1   MAIRKSSKLP-QAAVLKQILKRCSSLGKKQHSSYDEDGLPLDVPKGHFAVYVGEHRSRYI 59
           MAIRKS+K   Q  VLKQILKRCSSLGKK  + YD+DGLPLDVPKGHFAVYVG++RSRYI
Sbjct: 1   MAIRKSNKTTSQTTVLKQILKRCSSLGKK--NGYDDDGLPLDVPKGHFAVYVGQNRSRYI 58

Query: 60  VPISFLSHPEFQCLLRQAEEEFGFDHDMGLTIPCEEVVFRSLTSMLR 106
           VPISFL+HPEFQ LLRQAEEEFGFDH+MGLTIPCEEVVFRSLTSMLR
Sbjct: 59  VPISFLTHPEFQSLLRQAEEEFGFDHEMGLTIPCEEVVFRSLTSMLR 105

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359492215|ref|XP_003634383.1| PREDICTED: indole-3-acetic acid-induced protein ARG7 [Vitis vinifera] gi|147807620|emb|CAN73226.1| hypothetical protein VITISV_026201 [Vitis vinifera]

 Score =  182 bits (463), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 88/106 (83%), Positives = 98/106 (92%), Gaps = 2/106 (1%)

Query: 1   MAIRKSSKLPQAAVLKQILKRCSSLGKKQHSSYDEDGLPLDVPKGHFAVYVGEHRSRYIV 60
           MA+ KS+KL Q AVLKQILKRCSSLGKKQ   YD++GLPLDVPKGHFAVYVGE+R+RYIV
Sbjct: 1   MALGKSNKLSQTAVLKQILKRCSSLGKKQ--GYDQEGLPLDVPKGHFAVYVGENRTRYIV 58

Query: 61  PISFLSHPEFQCLLRQAEEEFGFDHDMGLTIPCEEVVFRSLTSMLR 106
           PISFL+ PEFQ LL+QAEEEFGFDH+MGLTIPCEEVVF+SLTSMLR
Sbjct: 59  PISFLTRPEFQSLLQQAEEEFGFDHEMGLTIPCEEVVFQSLTSMLR 104

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388517167|gb|AFK46645.1| unknown [Lotus japonicus]

 Score =  182 bits (462), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 89/105 (84%), Positives = 96/105 (91%), Gaps = 1/105 (0%)

Query: 1   MAIRKSSKLPQAAVLKQILKRCSSLGKKQHSSYDEDGLPLDVPKGHFAVYVGEHRSRYIV 60
           MA++KS+KLPQ AV KQILKRCSSLGKK     D+ GLPLDVPKGHFAVYVGE+RSRYIV
Sbjct: 1   MAVKKSNKLPQNAVFKQILKRCSSLGKKP-GFVDDYGLPLDVPKGHFAVYVGENRSRYIV 59

Query: 61  PISFLSHPEFQCLLRQAEEEFGFDHDMGLTIPCEEVVFRSLTSML 105
           PISFL+HPEFQ LLRQAEEEFGFDHDMGLTIPCEEVVFRSLTSM+
Sbjct: 60  PISFLTHPEFQSLLRQAEEEFGFDHDMGLTIPCEEVVFRSLTSMI 104

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351734422|ref|NP_001237264.1| uncharacterized protein LOC100306339 [Glycine max] gi|255628243|gb|ACU14466.1| unknown [Glycine max]

 Score =  181 bits (459), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 90/107 (84%), Positives = 97/107 (90%), Gaps = 3/107 (2%)

Query: 1   MAIRKSSKLP-QAAVLKQILKRCSSLGKKQHSSYDEDGLPLDVPKGHFAVYVGEHRSRYI 59
           MAIRKS+K   Q  VLKQILKRCSSLGKK  + YD+DGLPLDVPKGHFAVYVG++RSRYI
Sbjct: 1   MAIRKSNKTTSQTTVLKQILKRCSSLGKK--NGYDDDGLPLDVPKGHFAVYVGQNRSRYI 58

Query: 60  VPISFLSHPEFQCLLRQAEEEFGFDHDMGLTIPCEEVVFRSLTSMLR 106
           VPISFL+HPEFQ  LRQAEEEFGFDH+MGLTIPCEEVVFRSLTSMLR
Sbjct: 59  VPISFLTHPEFQSPLRQAEEEFGFDHEMGLTIPCEEVVFRSLTSMLR 105

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356531583|ref|XP_003534356.1| PREDICTED: auxin-induced protein 15A-like [Glycine max]

 Score =  181 bits (458), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 87/106 (82%), Positives = 98/106 (92%), Gaps = 2/106 (1%)

Query: 1   MAIRKSSKLPQAAVLKQILKRCSSLGKKQHSSYDEDGLPLDVPKGHFAVYVGEHRSRYIV 60
           MAIRKS+KLPQ AVLKQILKRCSSLGKK  + YD+DG P+DVPKGHFAVYVGE+R+RYIV
Sbjct: 1   MAIRKSNKLPQHAVLKQILKRCSSLGKK--NGYDDDGHPVDVPKGHFAVYVGENRTRYIV 58

Query: 61  PISFLSHPEFQCLLRQAEEEFGFDHDMGLTIPCEEVVFRSLTSMLR 106
           PISFL+HP+FQ LLRQAEEEFG+DH+MGLTIPC+E VFRSLTS LR
Sbjct: 59  PISFLAHPQFQSLLRQAEEEFGYDHEMGLTIPCDEDVFRSLTSSLR 104

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297839445|ref|XP_002887604.1| hypothetical protein ARALYDRAFT_476705 [Arabidopsis lyrata subsp. lyrata] gi|297333445|gb|EFH63863.1| hypothetical protein ARALYDRAFT_476705 [Arabidopsis lyrata subsp. lyrata]

 Score =  179 bits (454), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 84/108 (77%), Positives = 97/108 (89%), Gaps = 2/108 (1%)

Query: 1   MAIRKSSKLPQAAVLKQILKRCSSLGKKQHSSY--DEDGLPLDVPKGHFAVYVGEHRSRY 58
           MA++K++KL Q A++KQILKRCSSLGKKQ + Y  DE+G PL+VPKGHF VYVGE+R RY
Sbjct: 1   MAMKKANKLTQTAMIKQILKRCSSLGKKQSNVYSEDENGSPLNVPKGHFVVYVGENRVRY 60

Query: 59  IVPISFLSHPEFQCLLRQAEEEFGFDHDMGLTIPCEEVVFRSLTSMLR 106
           +VPISFL+ PEFQ LL+QAEEEFGFDHDMGLTIPCEEVVFRSLTSMLR
Sbjct: 61  VVPISFLTRPEFQLLLQQAEEEFGFDHDMGLTIPCEEVVFRSLTSMLR 108

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	106
TAIR|locus:2139589	107	AT4G34760 "AT4G34760" [Arabido	1.0	0.990	0.794	1.1e-41
TAIR|locus:2047117	104	AT2G21220 "AT2G21220" [Arabido	0.971	0.990	0.8	3.6e-41
TAIR|locus:2005709	108	AT1G75580 "AT1G75580" [Arabido	1.0	0.981	0.777	5.9e-41
TAIR|locus:2141786	105	AT4G38860 "AT4G38860" [Arabido	0.981	0.990	0.803	1.6e-40
TAIR|locus:2045086	108	AT2G16580 "AT2G16580" [Arabido	0.981	0.962	0.723	3e-37
TAIR|locus:2013074	117	AT1G19830 "AT1G19830" [Arabido	1.0	0.905	0.707	3.5e-36
TAIR|locus:2135144	104	SAUR9 "AT4G36110" [Arabidopsis	0.952	0.971	0.715	9.5e-34
TAIR|locus:2060928	112	AT2G18010 "AT2G18010" [Arabido	1.0	0.946	0.696	1.2e-33
TAIR|locus:2155016	99	AT5G66260 "AT5G66260" [Arabido	0.820	0.878	0.626	4.6e-25
TAIR|locus:2141772	99	AT4G38840 "AT4G38840" [Arabido	0.886	0.949	0.523	3.1e-19

TAIR|locus:2139589 AT4G34760 "AT4G34760" [Arabidopsis thaliana (taxid:3702)]

 Score = 442 (160.7 bits), Expect = 1.1e-41, P = 1.1e-41
 Identities = 85/107 (79%), Positives = 97/107 (90%)

Query:     1 MAI-RKSSKLPQAAVLKQILKRCSSLGKKQHSSYDEDGLPLDVPKGHFAVYVGEHRSRYI 59
             MAI +K+SKL Q A+LKQILKRCSSLGKK    YDED LPLDVPKGHF VYVGE+RSRYI
Sbjct:     1 MAIMKKTSKLTQTAMLKQILKRCSSLGKKNGGGYDEDCLPLDVPKGHFPVYVGENRSRYI 60

Query:    60 VPISFLSHPEFQCLLRQAEEEFGFDHDMGLTIPCEEVVFRSLTSMLR 106
             VPISFL+HPEFQ LL++AEEEFGFDHDMGLTIPC+E+VF++LTSM+R
Sbjct:    61 VPISFLTHPEFQSLLQRAEEEFGFDHDMGLTIPCDELVFQTLTSMIR 107

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2047117 AT2G21220 "AT2G21220" [Arabidopsis thaliana (taxid:3702)]

 Score = 437 (158.9 bits), Expect = 3.6e-41, P = 3.6e-41
 Identities = 84/105 (80%), Positives = 95/105 (90%)

Query:     1 MAIRKSSKLPQAAVLKQILKRCSSLGKKQHSSYDEDGLPLDVPKGHFAVYVGEHRSRYIV 60
             MA+++SSKL Q A+LKQILKRCSSL K Q   YDEDGLP+DVPKGHF VYVGE RSRYIV
Sbjct:     1 MAVKRSSKLTQTAMLKQILKRCSSLAKNQ--CYDEDGLPVDVPKGHFPVYVGEKRSRYIV 58

Query:    61 PISFLSHPEFQCLLRQAEEEFGFDHDMGLTIPCEEVVFRSLTSML 105
             PISFL+HP+F+ LL+QAEEEFGF+HDMGLTIPCEEVVFRSLTSM+
Sbjct:    59 PISFLTHPKFKSLLQQAEEEFGFNHDMGLTIPCEEVVFRSLTSMI 103

GO:0005516 "calmodulin binding" evidence=ISS

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2005709 AT1G75580 "AT1G75580" [Arabidopsis thaliana (taxid:3702)]

 Score = 435 (158.2 bits), Expect = 5.9e-41, P = 5.9e-41
 Identities = 84/108 (77%), Positives = 97/108 (89%)

Query:     1 MAIRKSSKLPQAAVLKQILKRCSSLGKKQHSSY--DEDGLPLDVPKGHFAVYVGEHRSRY 58
             MA++K++KL Q A++KQILKRCSSLGKKQ + Y  DE+G PL+VPKGHF VYVGE+R RY
Sbjct:     1 MAMKKANKLTQTAMIKQILKRCSSLGKKQSNVYGEDENGSPLNVPKGHFVVYVGENRVRY 60

Query:    59 IVPISFLSHPEFQCLLRQAEEEFGFDHDMGLTIPCEEVVFRSLTSMLR 106
             +VPISFL+ PEFQ LL+QAEEEFGFDHDMGLTIPCEEVVFRSLTSMLR
Sbjct:    61 VVPISFLTRPEFQLLLQQAEEEFGFDHDMGLTIPCEEVVFRSLTSMLR 108

GO:0005516 "calmodulin binding" evidence=ISS

GO:0005575 "cellular_component" evidence=ND

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2141786 AT4G38860 "AT4G38860" [Arabidopsis thaliana (taxid:3702)]

 Score = 431 (156.8 bits), Expect = 1.6e-40, P = 1.6e-40
 Identities = 86/107 (80%), Positives = 95/107 (88%)

Query:     1 MAIRKSSKLPQAAVLKQILKRCSSLGKKQHSSYDEDGLPLDVPKGHFAVYVGEHRSRYIV 60
             MA+++SSKL Q A+LKQILKRCSSLGKKQ   YDE+GLPLDVPKGHF VYVGE R+RYIV
Sbjct:     1 MAVKRSSKLTQTAMLKQILKRCSSLGKKQ--CYDEEGLPLDVPKGHFPVYVGEKRTRYIV 58

Query:    61 PISFLSHPEFQCLLRQAEEEFGFDHDMG-LTIPCEEVVFRSLTSMLR 106
             PISFL+HPEF  LL+QAEEEFGF HDMG LTIPCEEVVF SLTSM+R
Sbjct:    59 PISFLTHPEFLILLQQAEEEFGFRHDMGGLTIPCEEVVFLSLTSMIR 105

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2045086 AT2G16580 "AT2G16580" [Arabidopsis thaliana (taxid:3702)]

 Score = 400 (145.9 bits), Expect = 3.0e-37, P = 3.0e-37
 Identities = 76/105 (72%), Positives = 91/105 (86%)

Query:     3 IRKSSKLPQAAVLKQILKRCSSLGKKQHSS-YDEDGLPLDVPKGHFAVYVGEHRSRYIVP 61
             ++KS+KL Q A+L+QILKRCSSLGKK     Y+E  LPLDVPKGHF VYVG +RSRYIVP
Sbjct:     4 LKKSTKLAQTAMLRQILKRCSSLGKKNGGGGYEEVDLPLDVPKGHFPVYVGHNRSRYIVP 63

Query:    62 ISFLSHPEFQCLLRQAEEEFGFDHDMGLTIPCEEVVFRSLTSMLR 106
             ISFL++ +FQCLLR+AEEEFGFDHDMGLTIPC+E+ F+ LTSM+R
Sbjct:    64 ISFLTNLDFQCLLRRAEEEFGFDHDMGLTIPCDELFFQDLTSMIR 108

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2013074 AT1G19830 "AT1G19830" [Arabidopsis thaliana (taxid:3702)]

 Score = 390 (142.3 bits), Expect = 3.5e-36, P = 3.5e-36
 Identities = 80/113 (70%), Positives = 90/113 (79%)

Query:     1 MAIRKSSKLPQAAVLKQILKRCSSLGKKQHSSY------DEDGLPLDVPKGHFAVYVGEH 54
             MAI   SKL Q  ++KQILKRCSSLGKKQ S Y      D D LPLDVPKGHF VYVG +
Sbjct:     1 MAIINRSKLTQTTMIKQILKRCSSLGKKQSSEYNDTHEHDGDSLPLDVPKGHFVVYVGGN 60

Query:    55 RSRYIVPISFLSHPEFQCLLRQAEEEFGFDHDMGLTIPCEEVVFRSL-TSMLR 106
             R RY++PISFL+ PEFQ LL+QAEEEFGFDH+MGLTIPCEEV F+SL TSML+
Sbjct:    61 RVRYVLPISFLTRPEFQLLLQQAEEEFGFDHNMGLTIPCEEVAFKSLITSMLQ 113

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2135144 SAUR9 "AT4G36110" [Arabidopsis thaliana (taxid:3702)]

 Score = 367 (134.2 bits), Expect = 9.5e-34, P = 9.5e-34
 Identities = 78/109 (71%), Positives = 88/109 (80%)

Query:     1 MAIRKSSK--LPQAAVLKQILKRCSSLGKK-QHSSYDEDGLPLDVPKGHFAVYVGEHRSR 57
             MAI+KS+K  L QAA LKQILKRCSSLGKK Q + Y  D     VPKGHF VYVG+HRSR
Sbjct:     1 MAIKKSNKAALSQAASLKQILKRCSSLGKKNQGNCYFND-----VPKGHFPVYVGQHRSR 55

Query:    58 YIVPISFLSHPEFQCLLRQAEEEFGFDHDMGLTIPCEEVVFRSLTSMLR 106
             Y+VPIS+L H EFQ LL+ AEEEFGF+H+MGLTIPC+EVVFRSL SM R
Sbjct:    56 YVVPISWLDHHEFQSLLQLAEEEFGFEHEMGLTIPCDEVVFRSLISMFR 104

GO:0003674 "molecular_function" evidence=ND

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2060928 AT2G18010 "AT2G18010" [Arabidopsis thaliana (taxid:3702)]

 Score = 366 (133.9 bits), Expect = 1.2e-33, P = 1.2e-33
 Identities = 78/112 (69%), Positives = 89/112 (79%)

Query:     1 MAIRKSSKLP--QAAVLKQILKRCSSLGKKQHSS---YD-EDGLPLDVPKGHFAVYVGEH 54
             MAI++SSK    QAA +KQI+KRCSSL K ++ +   Y+ ED LP DVPKGHF VYVG +
Sbjct:     1 MAIKRSSKATSSQAASIKQIVKRCSSLRKMKNVNGCYYNQEDDLPQDVPKGHFPVYVGPN 60

Query:    55 RSRYIVPISFLSHPEFQCLLRQAEEEFGFDHDMGLTIPCEEVVFRSLTSMLR 106
             RSRYIVPIS+L H EFQ LLR AEEEFGFDHDMGLTIPC+EV FRSL SM R
Sbjct:    61 RSRYIVPISWLHHSEFQTLLRLAEEEFGFDHDMGLTIPCDEVFFRSLISMFR 112

GO:0003674 "molecular_function" evidence=ND

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2155016 AT5G66260 "AT5G66260" [Arabidopsis thaliana (taxid:3702)]

 Score = 285 (105.4 bits), Expect = 4.6e-25, P = 4.6e-25
 Identities = 57/91 (62%), Positives = 69/91 (75%)

Query:    15 LKQILKRCSSLGKKQHSSYDEDGLPLDVPKGHFAVYVGEHRSRYIVPISFLSHPEFQCLL 74
             LKQ+LKRCSSLGKK     + +G    VPKGHF VYVG  RSR+++PISFL+HP FQ LL
Sbjct:    11 LKQMLKRCSSLGKKSSVDVNFNG----VPKGHFVVYVGHSRSRHVIPISFLTHPIFQMLL 66

Query:    75 RQAEEEFGFDHDMGLTIPCEEVVFRSLTSML 105
             +Q+EEEFGF  D GLTIPC+E  FR+L S +
Sbjct:    67 QQSEEEFGFFQDNGLTIPCDEHFFRALISSI 97

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2141772 AT4G38840 "AT4G38840" [Arabidopsis thaliana (taxid:3702)]

 Score = 230 (86.0 bits), Expect = 3.1e-19, P = 3.1e-19
 Identities = 55/105 (52%), Positives = 65/105 (61%)

Query:     1 MAIRKSSKLPQAAVLKQILKRCSSLGKKQHSSYDEDGLPLDVPKGHFAVYVGEHR-SRYI 59
             MAIR    L  +   KQIL++   L     SS       LDVPKG+ AVYVGE    R++
Sbjct:     1 MAIRIPRVLQSS---KQILRQAKLLSSSSSSS------SLDVPKGYLAVYVGEQNMKRFV 51

Query:    60 VPISFLSHPEFQCLLRQAEEEFGFDHDMG-LTIPCEEVVFRSLTS 103
             VP+S+L  P FQ LLR+AEEEFGFDH MG LTIPC E +F  L S
Sbjct:    52 VPVSYLDQPSFQDLLRKAEEEFGFDHPMGGLTIPCSEEIFIDLAS 96

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

GO:0005886 "plasma membrane" evidence=IDA

GO:0009409 "response to cold" evidence=IEP;RCA

GO:0042742 "defense response to bacterium" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	106
PLN03090	104	PLN03090, PLN03090, auxin-responsive family protei	4e-76
pfam02519	99	pfam02519, Auxin_inducible, Auxin responsive prote	9e-39
PLN03220	105	PLN03220, PLN03220, uncharacterized protein; Provi	1e-23
PLN03219	108	PLN03219, PLN03219, uncharacterized protein; Provi	1e-18

>gnl|CDD|178639 PLN03090, PLN03090, auxin-responsive family protein; Provisional

 Score =  219 bits (559), Expect = 4e-76
 Identities = 92/106 (86%), Positives = 99/106 (93%), Gaps = 2/106 (1%)

Query: 1   MAIRKSSKLPQAAVLKQILKRCSSLGKKQHSSYDEDGLPLDVPKGHFAVYVGEHRSRYIV 60
           MAI+KS+KL Q A+LKQILKRCSSLGKKQ   YDEDGLPLDVPKGHF VYVGE+RSRYIV
Sbjct: 1   MAIKKSNKLTQTAMLKQILKRCSSLGKKQ--GYDEDGLPLDVPKGHFPVYVGENRSRYIV 58

Query: 61  PISFLSHPEFQCLLRQAEEEFGFDHDMGLTIPCEEVVFRSLTSMLR 106
           PISFL+HPEFQ LL+QAEEEFGFDHDMGLTIPCEEVVFRSLTSM+R
Sbjct: 59  PISFLTHPEFQSLLQQAEEEFGFDHDMGLTIPCEEVVFRSLTSMIR 104

Length = 104

>gnl|CDD|217082 pfam02519, Auxin_inducible, Auxin responsive protein

 Score =  124 bits (314), Expect = 9e-39
 Identities = 51/106 (48%), Positives = 58/106 (54%), Gaps = 7/106 (6%)

Query: 1   MAIRKSSKLPQAAVLKQILKRCSSLGKKQHSSYDEDGLPLDVPKGHFAVYVGEHRSRYIV 60
           MA R               K   S    +           DVPKGHFAVYVGE   R++V
Sbjct: 1   MASRLKK-------ASSAKKWILSAASGRSRGSSSKSSSADVPKGHFAVYVGEETRRFVV 53

Query: 61  PISFLSHPEFQCLLRQAEEEFGFDHDMGLTIPCEEVVFRSLTSMLR 106
           PIS+L+HP FQ LL +AEEEFGFD D GLTIPC+ VVF  L  ML 
Sbjct: 54  PISYLNHPLFQELLDRAEEEFGFDQDGGLTIPCDVVVFEHLLWMLE 99

This family consists of the protein products of the ARG7 auxin responsive genes family none of which have any identified functional role. Length = 99

>gnl|CDD|178759 PLN03220, PLN03220, uncharacterized protein; Provisional

 Score = 86.7 bits (214), Expect = 1e-23
 Identities = 51/102 (50%), Positives = 63/102 (61%), Gaps = 9/102 (8%)

Query: 7   SKLPQAAVLKQILKRCSSLGKKQHSSYDEDGLPLDVPKGHFAVYVGEH----RSRYIVPI 62
           S+   +   KQILK  S   + + SS   D     VPKGH AVYVGE     + R++VPI
Sbjct: 4   SRFAISNATKQILKLNSLANRNRTSSSSSD----HVPKGHVAVYVGEQIEMEKKRFVVPI 59

Query: 63  SFLSHPEFQCLLRQAEEEFGFDHDM-GLTIPCEEVVFRSLTS 103
           SFL+HP F+  L +AEEEFGF+H M GLTIPC E VF  L +
Sbjct: 60  SFLNHPSFKEFLSRAEEEFGFNHPMGGLTIPCREEVFLDLIA 101

Length = 105

>gnl|CDD|178758 PLN03219, PLN03219, uncharacterized protein; Provisional

 Score = 74.0 bits (181), Expect = 1e-18
 Identities = 52/104 (50%), Positives = 60/104 (57%), Gaps = 13/104 (12%)

Query: 7   SKLPQAAVLKQILKRCSSLGKKQHSS----YDEDGLPLDVPKGHFAVYVGEH--RSRYIV 60
           S LP A   KQI K  S   K   SS        GL   VPKGH AVYVGE   + R++V
Sbjct: 6   SMLPNA---KQIFKSQSMRNKNGSSSPSSSTTTSGL---VPKGHVAVYVGEQMEKKRFVV 59

Query: 61  PISFLSHPEFQCLLRQAEEEFGFDHDM-GLTIPCEEVVFRSLTS 103
           PIS+L+HP F+  L +AEEE GF H M GLTIPC E  F  L +
Sbjct: 60  PISYLNHPLFREFLNRAEEECGFHHSMGGLTIPCREESFLHLIT 103

Length = 108

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	106
PLN03090	104	auxin-responsive family protein; Provisional	100.0
PLN03220	105	uncharacterized protein; Provisional	100.0
PF02519	100	Auxin_inducible: Auxin responsive protein; InterPr	100.0
PLN03219	108	uncharacterized protein; Provisional	100.0
PF02214	94	BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassi	90.82
PRK02899	197	adaptor protein; Provisional	88.14
PRK02315	233	adaptor protein; Provisional	85.47
smart00666	81	PB1 PB1 domain. Phox and Bem1p domain, present in	81.16
PF05389	220	MecA: Negative regulator of genetic competence (Me	80.27

>PLN03090 auxin-responsive family protein; Provisional

Probab=100.00  E-value=1.4e-47  Score=267.37  Aligned_cols=104  Identities=88%  Similarity=1.390  Sum_probs=97.8

Q ss_pred             CCccccCCcchhHHHHHHHhhhhccccCCCCCCCCCCCCccCCCceEEEEEcCcceEEEEeccCCCcHHHHHHHHHHHHh
Q 046487            1 MAIRKSSKLPQAAVLKQILKRCSSLGKKQHSSYDEDGLPLDVPKGHFAVYVGEHRSRYIVPISFLSHPEFQCLLRQAEEE   80 (106)
Q Consensus         1 m~~~~~~~~~~~~~lk~~lkr~~S~~~~~~~~~~~~~~~~~vpkG~~aVyVG~~~~RfvVp~~~L~hP~F~~LL~~aeeE   80 (106)
                      |+++|++||++++++||+|+||+|+++++  +++.+..|.+||+||||||||++++||+||++|||||+|++||++||||
T Consensus         1 m~~~k~~ki~~~~~~kq~l~r~~s~~~~~--~~~~~~~~~~vpkG~~aVyVG~~~~RfvVp~~~L~hP~F~~LL~~aeeE   78 (104)
T PLN03090          1 MAIKKSNKLTQTAMLKQILKRCSSLGKKQ--GYDEDGLPLDVPKGHFPVYVGENRSRYIVPISFLTHPEFQSLLQQAEEE   78 (104)
T ss_pred             CCcccccchhHHHHHHHHHHHHHHhcccC--CcccccCCCCCCCCcEEEEECCCCEEEEEEHHHcCCHHHHHHHHHHHHH
Confidence            89999999999999999999999999864  3444557889999999999999999999999999999999999999999


Q ss_pred             cCCcCCCceEeeCcHHHHHHHHhhhC
Q 046487           81 FGFDHDMGLTIPCEEVVFRSLTSMLR  106 (106)
Q Consensus        81 ~G~~~~G~l~IpC~~~~Fe~vl~~l~  106 (106)
                      |||+|+|+|+|||+++.|++++|||+
T Consensus        79 fGf~~~G~L~IPC~~~~Fe~ll~~i~  104 (104)
T PLN03090         79 FGFDHDMGLTIPCEEVVFRSLTSMIR  104 (104)
T ss_pred             hCCCCCCcEEEeCCHHHHHHHHHHhC
Confidence            99999999999999999999999985

>PLN03220 uncharacterized protein; Provisional

Probab=100.00  E-value=7.9e-37  Score=213.37  Aligned_cols=96  Identities=50%  Similarity=0.835  Sum_probs=79.5

Q ss_pred             CCccccCCcchhHHHHHHHhhhhccccCCCCCCCCCCCCccCCCceEEEEEcC----cceEEEEeccCCCcHHHHHHHHH
Q 046487            1 MAIRKSSKLPQAAVLKQILKRCSSLGKKQHSSYDEDGLPLDVPKGHFAVYVGE----HRSRYIVPISFLSHPEFQCLLRQ   76 (106)
Q Consensus         1 m~~~~~~~~~~~~~lk~~lkr~~S~~~~~~~~~~~~~~~~~vpkG~~aVyVG~----~~~RfvVp~~~L~hP~F~~LL~~   76 (106)
                      |++++.+.   ....||+|+||. ++++.. .  ....+.+|||||||||||+    +++||+||++|||||.|++||++
T Consensus         1 ~~~~~~~~---~~~~k~~~~~~~-~~~~~~-~--~~~~~~~VPkGh~aVyVGe~~~~e~kRFVVPv~yL~hP~F~~LL~~   73 (105)
T PLN03220          1 MGLSRFAI---SNATKQILKLNS-LANRNR-T--SSSSSDHVPKGHVAVYVGEQIEMEKKRFVVPISFLNHPSFKEFLSR   73 (105)
T ss_pred             CCcchhhh---HHHHHHHHHHHh-hccccc-c--cccccCCCCCCeEEEEECCCCCccceEEEEEHHHcCChHHHHHHHH
Confidence            55555432   446799999998 655422 1  1224568999999999997    58999999999999999999999


Q ss_pred             HHHhcCCcC-CCceEeeCcHHHHHHHHh
Q 046487           77 AEEEFGFDH-DMGLTIPCEEVVFRSLTS  103 (106)
Q Consensus        77 aeeE~G~~~-~G~l~IpC~~~~Fe~vl~  103 (106)
                      |||||||+| +|+|+|||+++.|++++.
T Consensus        74 AeEEfGf~~~~G~L~IPCd~~~F~~ll~  101 (105)
T PLN03220         74 AEEEFGFNHPMGGLTIPCREEVFLDLIA  101 (105)
T ss_pred             HHHHhCCCCCCCCEEeeCCHHHHHHHHH
Confidence            999999998 599999999999999986

>PF02519 Auxin_inducible: Auxin responsive protein; InterPro: IPR003676 This family consists of the protein products of a gene cluster that encodes a group of auxin-regulated RNAs (small auxin up RNAs, SAURs) []

Probab=100.00  E-value=7.4e-37  Score=211.39  Aligned_cols=68  Identities=65%  Similarity=1.099  Sum_probs=65.7

Q ss_pred             CccCCCceEEEEEcCcceEEEEeccCCCcHHHHHHHHHHHHhcCCcCCCceEeeCcHHHHHHHHhhhC
Q 046487           39 PLDVPKGHFAVYVGEHRSRYIVPISFLSHPEFQCLLRQAEEEFGFDHDMGLTIPCEEVVFRSLTSMLR  106 (106)
Q Consensus        39 ~~~vpkG~~aVyVG~~~~RfvVp~~~L~hP~F~~LL~~aeeE~G~~~~G~l~IpC~~~~Fe~vl~~l~  106 (106)
                      ..++|+||||||||++++||+||++|||||+|++||++|||||||+++|+|+|||+++.|+++||+|.
T Consensus        33 ~~~vp~G~~~VyVG~~~~Rfvvp~~~L~hp~f~~LL~~aeeEfG~~~~G~l~iPC~~~~Fe~~l~~le  100 (100)
T PF02519_consen   33 ESDVPKGHFAVYVGEERRRFVVPVSYLNHPLFQELLEQAEEEFGFDQDGPLTIPCDVVLFEHLLWLLE  100 (100)
T ss_pred             cCCCCCCeEEEEeCccceEEEechHHcCchhHHHHHHHHhhhcCcCCCCcEEeeCCHHHHHHHHHHhC
Confidence            36899999999999999999999999999999999999999999999999999999999999999983

Proteins from this ARG7 auxin responsive genes family have no identified functional role [].

>PLN03219 uncharacterized protein; Provisional

Probab=100.00  E-value=3.4e-36  Score=211.07  Aligned_cols=100  Identities=46%  Similarity=0.666  Sum_probs=82.8

Q ss_pred             CCccccCCcchhHHHHHHHhhhhccccCCCC-CCCCCCCCccCCCceEEEEEcC--cceEEEEeccCCCcHHHHHHHHHH
Q 046487            1 MAIRKSSKLPQAAVLKQILKRCSSLGKKQHS-SYDEDGLPLDVPKGHFAVYVGE--HRSRYIVPISFLSHPEFQCLLRQA   77 (106)
Q Consensus         1 m~~~~~~~~~~~~~lk~~lkr~~S~~~~~~~-~~~~~~~~~~vpkG~~aVyVG~--~~~RfvVp~~~L~hP~F~~LL~~a   77 (106)
                      |+++++...    +.|||+|.-...++..++ ...+.+.+.+|||||||||||+  +++||+||++|||||+|++||++|
T Consensus         1 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vpkGh~aVYVG~~~E~kRFvVPi~yL~hP~F~~LL~~A   76 (108)
T PLN03219          1 MGLMRSMLP----NAKQIFKSQSMRNKNGSSSPSSSTTTSGLVPKGHVAVYVGEQMEKKRFVVPISYLNHPLFREFLNRA   76 (108)
T ss_pred             CchHHHHHh----hHHHHHHHHHHhcccCCCCCccCCCCCCCCCCCeEEEEECCCCCceEEEEEHHHcCChHHHHHHHHH
Confidence            666776543    788888766555555433 2334456678999999999997  589999999999999999999999


Q ss_pred             HHhcCCcC-CCceEeeCcHHHHHHHHhh
Q 046487           78 EEEFGFDH-DMGLTIPCEEVVFRSLTSM  104 (106)
Q Consensus        78 eeE~G~~~-~G~l~IpC~~~~Fe~vl~~  104 (106)
                      ||||||++ +|+|+|||+++.|++||+.
T Consensus        77 eEEfGf~~~~G~L~IPCd~~~F~~ll~~  104 (108)
T PLN03219         77 EEECGFHHSMGGLTIPCREESFLHLITS  104 (108)
T ss_pred             HHHhCCCCCCCCEEEeCCHHHHHHHHHh
Confidence            99999997 5999999999999999974

>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]

Probab=90.82  E-value=0.18  Score=32.91  Aligned_cols=57  Identities=21%  Similarity=0.202  Sum_probs=40.9

Q ss_pred             EEEEcCcceEEEEeccCCC-cH--HHHHHHHHHHHhcCCcCCCceEeeCcHHHHHHHHhhhC
Q 046487           48 AVYVGEHRSRYIVPISFLS-HP--EFQCLLRQAEEEFGFDHDMGLTIPCEEVVFRSLTSMLR  106 (106)
Q Consensus        48 aVyVG~~~~RfvVp~~~L~-hP--~F~~LL~~aeeE~G~~~~G~l~IpC~~~~Fe~vl~~l~  106 (106)
                      .+-||.  ++|.++.+-|. +|  .|..+++.......-+.+|.+-|-++...|++||.-|+
T Consensus         2 ~lNVGG--~~f~~~~~tL~~~~~s~l~~~~~~~~~~~~~~~~~~~fiDRdp~~F~~IL~ylr   61 (94)
T PF02214_consen    2 RLNVGG--TIFETSRSTLTRYPDSLLARLFSGERSDDYDDDDGEYFIDRDPELFEYILNYLR   61 (94)
T ss_dssp             EEEETT--EEEEEEHHHHHTSTTSTTTSHHHTGHGGGEETTTTEEEESS-HHHHHHHHHHHH
T ss_pred             EEEECC--EEEEEcHHHHhhCCCChhhhHHhhccccccCCccceEEeccChhhhhHHHHHHh
Confidence            456786  58999987776 44  78888886522222234688999999999999998764

They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....

>PRK02899 adaptor protein; Provisional

Probab=88.14  E-value=0.46  Score=36.21  Aligned_cols=25  Identities=28%  Similarity=0.651  Sum_probs=21.3

Q ss_pred             cHHHHHHHHHHHHhcCCcCCCceEe
Q 046487           67 HPEFQCLLRQAEEEFGFDHDMGLTI   91 (106)
Q Consensus        67 hP~F~~LL~~aeeE~G~~~~G~l~I   91 (106)
                      +-+|.++|++|..|+||..+|||+|
T Consensus        38 e~lF~~mm~Ea~~e~~F~~~~pl~~   62 (197)
T PRK02899         38 HQLFRDMMQEANKELGFEADGPIAV   62 (197)
T ss_pred             HHHHHHHHHHhhhccCcccCCeEEE
Confidence            3467777999999999999999875

>PRK02315 adaptor protein; Provisional

Probab=85.47  E-value=0.67  Score=36.03  Aligned_cols=25  Identities=20%  Similarity=0.271  Sum_probs=22.6

Q ss_pred             cHHHHHHHHHHHHhcCCcCCCceEe
Q 046487           67 HPEFQCLLRQAEEEFGFDHDMGLTI   91 (106)
Q Consensus        67 hP~F~~LL~~aeeE~G~~~~G~l~I   91 (106)
                      +-.|.++|++|..|+||..+|+|+|
T Consensus        38 e~fF~~mm~Ea~~e~~F~~~~pl~~   62 (233)
T PRK02315         38 EEFFYSMMDEVDEEDDFADEGPLWF   62 (233)
T ss_pred             HHHHHHHHHHhccccCcccCCeEEE
Confidence            3579999999999999999999986

>smart00666 PB1 PB1 domain

Probab=81.16  E-value=4.7  Score=25.31  Aligned_cols=48  Identities=23%  Similarity=0.353  Sum_probs=35.5

Q ss_pred             EEcCcceEEEEeccCCCcHHHHHHHHHHHHhcCCc----------CCC-ceEeeCcHHHHHHHH
Q 046487           50 YVGEHRSRYIVPISFLSHPEFQCLLRQAEEEFGFD----------HDM-GLTIPCEEVVFRSLT  102 (106)
Q Consensus        50 yVG~~~~RfvVp~~~L~hP~F~~LL~~aeeE~G~~----------~~G-~l~IpC~~~~Fe~vl  102 (106)
                      +-|++.+||.+|.    .+.|.+|..+..+-|+..          .+| .++|.++.+ ++.++
T Consensus         7 ~~~~~~~~~~~~~----~~s~~dL~~~i~~~~~~~~~~~~l~Y~Dedgd~v~l~sd~D-l~~a~   65 (81)
T smart00666        7 RYGGETRRLSVPR----DISFEDLRSKVAKRFGLDNQSFTLKYQDEDGDLVSLTSDED-LEEAI   65 (81)
T ss_pred             EECCEEEEEEECC----CCCHHHHHHHHHHHhCCCCCCeEEEEECCCCCEEEecCHHH-HHHHH
Confidence            3377889999985    778999999999988874          245 688888654 34333

Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.

>PF05389 MecA: Negative regulator of genetic competence (MecA); InterPro: IPR008681 Competence is the ability of a cell to take up exogenous DNA from its environment, resulting in transformation

Probab=80.27  E-value=0.54  Score=35.69  Aligned_cols=25  Identities=40%  Similarity=0.628  Sum_probs=0.0

Q ss_pred             cHHHHHHHHHHHHhcCCcCCCceEe
Q 046487           67 HPEFQCLLRQAEEEFGFDHDMGLTI   91 (106)
Q Consensus        67 hP~F~~LL~~aeeE~G~~~~G~l~I   91 (106)
                      +-.|.++|++|.+|+||+.+|+|++
T Consensus        38 e~fF~~ileea~~e~~F~~~~~l~~   62 (220)
T PF05389_consen   38 EEFFYSILEEADEEHGFENDGPLTF   62 (220)
T ss_dssp             -------------------------
T ss_pred             HHHHHHHHHHhccccCcccCCeEEE
Confidence            5679999999999999999998875

It is widespread among bacteria and is probably an important mechanism for the horizontal transfer of genes. Cells that take up DNA inevitably acquire the nucleotides the DNA consists of, and, because nucleotides are needed for DNA and RNA synthesis and are expensive to synthesise, these may make a significant contribution to the cell's energy budget []. The lateral gene transfer caused by competence also contributes to the genetic diversity that makes evolution possible. DNA usually becomes available by the death and lysis of other cells. Competent bacteria use components of extracellular filaments called type 4 pili to create pores in their membranes and pull DNA through the pores into the cytoplasm. This process, including the development of competence and the expression of the uptake machinery, is regulated in response to cell-cell signalling and/or nutritional conditions []. This family contains several bacterial MecA proteins. In complex media competence development is poor, and there is little or no expression of late competence genes. Overexpression of MecA inhibits comG transcription [, , ]. MecA enables the recognition and targeting of unfolded and aggregated proteins to the ClpC protease or to other proteins involved in proteolysis. Acts negatively in the development of competence by binding ComK and recruiting it to the ClpCP protease. When overexpressed, inhibits sporulation. Also involved in Spx degradation by ClpC. ; PDB: 3JTP_C 2Y1R_O 3PXI_c 3PXG_b 3JTO_D 3JTN_A.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00