Citrus Sinensis ID: 046523

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-
Protein Sequence
MMAGNGELSVPPGFRFHPTDEELLYYYLRKKVSFEAIDLDVIREVDLNKLEPWDLKDKCRIGSGPQNEWYFFSHKDKKYPTGTRTNRATTAGFWKATGRDKAIHITMANVNSSRRIGMRKTLVFYTGRAPHGQKTDWIMHEYRLDDDEYSSSSSEVVQEDGWVVCRVFKKKNHINRSYFQSEVAHEYDQEEHIISNNNNNYIMKTSATASSAAPEPKQSRRRHLQALYHECNSSFDGSMHLPQLFSSESAVITPSFISPMISLNNMDIECSQNLLRLTTSASGSGSGLMQQAAHDQRFNGDWSFLDKLLTSHVHHSAQQQPDQINSHSKCNPSSSSTVVDHVQVASSSTHYQKFPLYYLGCDAEDIMKFSK
Secondary Structure (PSIPRED)
ccccccccccccccccccccHHHHHHHHHHHHcccccccccEEEEEcccccccccccccccccccccEEEEcccccccccccccccccccccccccccccccEEEccccccccEEEEEEEEcEEEccccccccccccEEEEccccccccccccccccccccEEEEEEEEccccccccccccccccccccHHHHccccccccccccccccccccccccccHHHHHHHHcccccccccccccccccccccccccccccccccccccccccHHHHHHHHHccccccccccccccccccccccccHHHHHHHccccccccccccccccccccccccccccHHHHHHHHccccccccccccccccccHHHHccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccHHHHHHHHHHHHHccccccccEEEHEccccccccccHHHcccccccccEEEEEccccccccccccccHHHHcccEEcccccccEEccccccccccEEEEEEEEEEEcccccccccccEEEEEEEccccccccccccccccccEEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHcccHHHccccccccccccccccccHHHHHHHccccccccccccHHHccccHHHHHcccc
Coil and Loop (DISEMBL)
mmagngelsvppgfrfhptdEELLYYYLRKKVSfeaidldvirevdlnklepwdlkdkcrigsgpqnewyffshkdkkyptgtrtnrattagFWKATGRDKAIHITMANVNSSRRIGMRKTLVfytgraphgqktdwimheyrldddeysssssevvqedgWVVCRVFkkknhinrsyfqsevaheydqeehiisnnnnnyimktsatassaapepkqSRRRHLQALYHEcnssfdgsmhlpqlfssesavitpsfispmislnnmdiECSQNLLRlttsasgsgsglmqqaahdqrfngdwSFLDKLLTshvhhsaqqqpdqinshskcnpsssstvvDHVQVasssthyqkfplyylgcdaEDIMKFSK
Flexible Loop (DISEMBL)
mmagngelsvppgfrfhpTDEELLYYYLRKKVSFeaidldvirevdlnklepwdlkdkcrigsgpqnewyffshkdkkyptgtrtnrattagfwkatgrdkaIHITmanvnssrrigMRKTLVFYtgraphgqktdWIMHEYRLDDDEYSSSssevvqedgwVVCRVFKKKNHINRSYFQSEVAHEYDQEEHIISNNNNNYIMKTSATassaapepKQSRRRHLQALYHECNSSFDGSMHLPQLFSSESAVITPSFISPMISLNNMDIECSQNLLRLTTSASGSGSGLMQQAAHDQRFNGDWSFLDKLLTSHVHHSAQQQPDQINSHSKCNPSSSSTVVDHVQVASssthyqkfplyylGCDAEDIMKFSK
Low Complexity Region (SEG)
MMAGNGELSVPPGFRFHPTDEELLYYYLRKKVSFEAIDLDVIREVDLNKLEPWDLKDKCRIGSGPQNEWYFFSHKDKKYPtgtrtnrattagFWKATGRDKAIHITMANVNSSRRIGMRKTLVFYTGRAPHGQKTDWIMHEYRLDDDEYsssssEVVQEDGWVVCRVFKKKNHINRSYFQSEVAHEYDQEEHIISNNNNNYIMKtsatassaaPEPKQSRRRHLQALYHECNSSFDGSMHLPQLFSSESAVITPSFISPMISLNNMDIECSQNllrlttsasgsgsglMQQAAHDQRFNGDWSFLDKLLTSHVHHSAQQQPDQINshskcnpssssTVVDHVQVASSSTHYQKFPLYYLGCDAEDIMKFSK
Disordered region (IsUnstruct)
*************FRFHPTDEELLYYYLRKKVSFEAIDLDVIREVDLNKLEPWDLKDKCRIGSGPQNEWYFFSHKDKKYPTGTRTNRATTAGFWKATGRDKAIHITMANVNSSRRIGMRKTLVFYTGRAPHGQKTDWIMHEYRLD**********VVQEDGWVVCRVFKKKNHINRSYFQSEV*******************************************LYHECN*******HLPQLFSSESAVITPSFISPMISLNNMDIECSQNLLRL********************FNGDWSFLDKLLTS********************************VA*SSTHYQKFPLYYLGCDAEDI*****
Disordered Region (DISOPRED)
***********PGFRFHPTDEELLYYYLRKKVSFEAIDLDVIREVDLNKLEPWDLKDKCRIGSGPQNEWYFFSHKDKKYPTGTRTNRATTAGFWKATGRDKAIHITMANVNSSRRIGMRKTLVFYTGRAPHGQKTDWIMHEYRLD***************GWVVCRVFK***********************************************************************************************************************************DWSFLDKLLT********************************************PLYYLGCDAEDIMKFS*
Disordered Region (DISEMBL)
********SVPPGFRFHPTDEELLYYYLRKKVSFEAIDLDVIREVDLNKLEPWDLKDKCRIGSGPQNEWYFFSHKDKKYPTGTRTNRATTAGFWKATGRDKAIHITMANVNSSRRIGMRKTLVFYTGRAPHGQKTDWIMHEYRLDD***********QEDGWVVCRVFKKKNHINRSYFQSEVAHEYDQEEHIISNNNNNYIMKTS****************HLQALYHECNSSFDGSMHLPQLFSSESAVITPSFISPMISLNNMDIECSQNLLRLTTSAS***********HDQRFNGDWSFLDKLLTSH****************************HVQVASSSTHYQKFPLYYLGCDAEDIMKFSK
Disordered Region (DISPRO)
*********VPPGFRFHPTDEELLYYYLRKKVSFEAIDLDVIREVDLNKLEPWDLKDKCRIGSGPQNEWYFFSHKDKKYPTGTRTNRATTAGFWKATGRDKAIHITMANVNSSRRIGMRKTLVFYTGRAPHGQKTDWIMHEYRLDDDEY****SEVVQEDGWVVCRVFKKKN**********************************************SRRRHLQALYHECNSSFDGSMHLPQLFSSESAVITPSFISP*************************************RFNGDWSFLDKLLTSHVHH**********************************HYQKFPLYYLGCDAEDIMKFSK
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MMAGNGELSVPPGFRFHPTDEELLYYYLRKKVSFEAIDLDVIREVDLNKLEPWDLKDKCRIGSGPQNEWYFFSHKDKKYPTGTRTNRATTAGFWKATGRDKAIHITMANVNSSRRIGMRKTLVFYTGRAPHGQKTDWIMHEYRLDDDEYSSSSSEVVQEDGWVVCRVFKKKNHINRSYFQSEVAHEYDQEEHIISNNNNNYIMKTSATASSAAPEPKQSRRRHLQALYHECNSSFDGSMHLPQLFSSESAVITPSFISPMISLNNMDIECSQNLLRLTTSASGSGSGLMQQAAHDQRFNGDWSFLDKLLTSHVHHSAQQQPDQINSHSKCNPSSSSTVVDHVQVASSSTHYQKFPLYYLGCDAEDIMKFSK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	371	2.2.26 [Sep-21-2011]
Q9MA17	371	Protein SOMBRERO OS=Arabi	yes	no	0.908	0.908	0.530	5e-99
Q5Z6B6	276	NAC domain-containing pro	no	no	0.436	0.586	0.797	7e-79
Q9SV87	341	Protein BEARSKIN1 OS=Arab	no	no	0.760	0.826	0.486	9e-74
Q9LPI7	358	NAC domain-containing pro	no	no	0.447	0.463	0.715	3e-73
Q84WP6	365	NAC domain-containing pro	no	no	0.436	0.443	0.702	1e-71
Q9C878	305	Protein BEARSKIN1 OS=Arab	no	no	0.425	0.518	0.709	5e-70
Q9M274	334	NAC domain-containing pro	no	no	0.444	0.494	0.651	3e-67
Q9FWX2	395	NAC domain-containing pro	no	no	0.458	0.430	0.628	9e-64
Q52QH4	318	NAC domain-containing pro	no	no	0.455	0.531	0.497	3e-48
Q5CD17	396	NAC domain-containing pro	no	no	0.442	0.414	0.516	6e-47

>sp|Q9MA17|SMB_ARATH Protein SOMBRERO OS=Arabidopsis thaliana GN=SMB PE=1 SV=1

 Score =  361 bits (926), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 210/396 (53%), Positives = 258/396 (65%), Gaps = 59/396 (14%)

Query: 2   MAGNGELSVPPGFRFHPTDEELLYYYLRKKVSFEAIDLDVIREVDLNKLEPWDLKDKCRI 61
           +AG G+LSVPPGFRFHPT+EELLYYYL+KKVS+E IDLDVIREVDLNKLEPW+LK+KCRI
Sbjct: 9   VAGGGQLSVPPGFRFHPTEEELLYYYLKKKVSYEPIDLDVIREVDLNKLEPWELKEKCRI 68

Query: 62  GSGPQNEWYFFSHKDKKYPTGTRTNRATTAGFWKATGRDKAIHITMANVNSSRRIGMRKT 121
           GSGPQNEWYFFSHKDKKYPTGTRTNRAT AGFWKATGRDK+IH+     NSS++IG+RKT
Sbjct: 69  GSGPQNEWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKSIHL-----NSSKKIGLRKT 123

Query: 122 LVFYTGRAPHGQKTDWIMHEYRLDDDEYSSSSSEVVQEDGWVVCRVFKKKNHINRSYFQS 181
           LVFYTGRAPHGQKT+WIMHEYRLDD E        +QEDGWVVCRVFKKKNH  R + Q 
Sbjct: 124 LVFYTGRAPHGQKTEWIMHEYRLDDSE------NEIQEDGWVVCRVFKKKNHF-RGFHQE 176

Query: 182 EVAHEYDQEEHI-----------ISNNNNNYIMKTSATASSAAPEPKQSRRRHLQALYHE 230
           +    +   ++I           I +N+NN+                  R+ H+  L+  
Sbjct: 177 QEQDHHHHHQYISTNNDHDHHHHIDSNSNNHSPLILHPLDHHHHHHHIGRQIHM-PLHEF 235

Query: 231 CNSSFDGSMHLPQLFSSESAVITPS-------FISPMISLNNMDIECSQNLLRLTTSASG 283
            N+   GSMHLPQLFS +SA    +       F+SP   +N  DIECSQNLLRLT+    
Sbjct: 236 ANTLSHGSMHLPQLFSPDSAAAAAAAAASAQPFVSP---INTTDIECSQNLLRLTS---- 288

Query: 284 SGSGLMQQAAHDQRFNGDWSFLDKLLTSHVHHSAQQQPDQINSHSKC----NPSSSSTVV 339
                      +  + GDWSFLDKLLT+   +  QQQ    N  +KC    + + ++   
Sbjct: 289 -----------NNNYGGDWSFLDKLLTTGNMNQQQQQ-QVQNHQAKCFGDLSNNDNNDQA 336

Query: 340 DHVQVASSSTHY----QKFPLYYLGCDAEDIMKFSK 371
           DH+   +  +      Q+FP +YLG DA +++KF K
Sbjct: 337 DHLGNNNGGSSSSPVNQRFPFHYLGNDA-NLLKFPK 371

Transcription regulator. Together with BRN1 and BRN2, regulates cellular maturation of root cap. Represses stem cell-like divisions in the root cap daughter cells, and thus promotes daughter cell fate. Inhibits expression of its positive regulator FEZ in a feedback loop for controlled switches in cell division plane. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis.
Arabidopsis thaliana (taxid: 3702)

>sp|Q5Z6B6|NAC76_ORYSJ NAC domain-containing protein 76 OS=Oryza sativa subsp. japonica GN=NAC76 PE=2 SV=2

 Score =  294 bits (753), Expect = 7e-79,   Method: Compositional matrix adjust.
 Identities = 138/173 (79%), Positives = 147/173 (84%), Gaps = 11/173 (6%)

Query: 1   MMAGNGELSVPPGFRFHPTDEELLYYYLRKKVSFEAIDLDVIREVDLNKLEPWDLKDKCR 60
           M    G LSVPPGFRFHPTDEELLYYYLRKKV++EAIDLDVIRE+DLNKLEPWDLKD+CR
Sbjct: 1   MHPSGGALSVPPGFRFHPTDEELLYYYLRKKVAYEAIDLDVIREIDLNKLEPWDLKDRCR 60

Query: 61  IGSGPQNEWYFFSHKDKKYPTGTRTNRATTAGFWKATGRDKAIHITMANVNSSRRIGMRK 120
           IG+GPQNEWYFFSHKDKKYPTGTRTNRATTAGFWKATGRDKAI +  A      RIGMRK
Sbjct: 61  IGTGPQNEWYFFSHKDKKYPTGTRTNRATTAGFWKATGRDKAIFLANAC-----RIGMRK 115

Query: 121 TLVFYTGRAPHGQKTDWIMHEYRLDDDEYSSSSSEVVQEDGWVVCRVFKKKNH 173
           TLVFY GRAPHG+KTDWIMHEYRLD D         VQEDGWVVCRVF KK++
Sbjct: 116 TLVFYVGRAPHGKKTDWIMHEYRLDQDNVD------VQEDGWVVCRVFMKKSY 162

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9SV87|BRN2_ARATH Protein BEARSKIN1 OS=Arabidopsis thaliana GN=BRN2 PE=2 SV=1

 Score =  277 bits (709), Expect = 9e-74,   Method: Compositional matrix adjust.
 Identities = 159/327 (48%), Positives = 201/327 (61%), Gaps = 45/327 (13%)

Query: 2   MAGNGELSVPPGFRFHPTDEELLYYYLRKKVSFEAIDLDVIREVDLNKLEPWDLKDKCRI 61
           M  +    VPPGFRFHPTDEELL+YYL+KK+S++  +++VIREVDLNKLEPWDL+++C+I
Sbjct: 1   MGSSSNGGVPPGFRFHPTDEELLHYYLKKKISYQKFEMEVIREVDLNKLEPWDLQERCKI 60

Query: 62  GSGPQNEWYFFSHKDKKYPTGTRTNRATTAGFWKATGRDKAIHITMANVNSSRRIGMRKT 121
           GS PQNEWYFFSHKD+KYPTG+RTNRAT AGFWKATGRDK I       NS ++IGMRKT
Sbjct: 61  GSTPQNEWYFFSHKDRKYPTGSRTNRATHAGFWKATGRDKCIR------NSYKKIGMRKT 114

Query: 122 LVFYTGRAPHGQKTDWIMHEYRLDD-DEYSSSSSEVVQEDGWVVCRVFKKKNHINRSYFQ 180
           LVFY GRAPHGQKTDWIMHEYRL+D D+  ++ S    EDGWVVCRVF KKN        
Sbjct: 115 LVFYKGRAPHGQKTDWIMHEYRLEDADDPQANPS----EDGWVVCRVFMKKNLFKVVNEG 170

Query: 181 SEVAHEYDQEEHIISNNNNNYIMKTSATASSAAPEPKQSRRRHLQALYHECNSSFDGSMH 240
           S   +  DQ  H  SNNN+    ++     S    P Q  R H  A+  E N   D ++H
Sbjct: 171 SSSINSLDQHNHDASNNNHALQARSFMHRDS----PYQLVRNH-GAMTFELNKP-DLALH 224

Query: 241 LPQLFSSESAVITPSFISPMISLNNMDIECSQNLLRLTTSASGSGSGLMQQ--------- 291
                        P F  P     ++  + S  L R + SA+  G    Q          
Sbjct: 225 ----------QYPPIFHKPP----SLGFDYSSGLARDSESAASEGLQYQQACEPGLDVGT 270

Query: 292 ----AAHD-QRFNGDWSFLDKLLTSHV 313
               A+H+ Q+  G+W+ +D+L+T H+
Sbjct: 271 CETVASHNHQQGLGEWAMMDRLVTCHM 297

Transcription activator. Together with BRN1 and SMB, regulates cellular maturation of root cap. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LPI7|NAC12_ARATH NAC domain-containing protein 12 OS=Arabidopsis thaliana GN=NAC012 PE=2 SV=1

 Score =  275 bits (704), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 128/179 (71%), Positives = 148/179 (82%), Gaps = 13/179 (7%)

Query: 2   MAGNGELSVPPGFRFHPTDEELLYYYLRKKVSFEAIDLDVIREVDLNKLEPWDLKDKCRI 61
           ++ NG+  VPPGFRFHPT+EELL+YYLRKKV+ + IDLDVIREVDLNKLEPWD++++CRI
Sbjct: 8   LSINGQSKVPPGFRFHPTEEELLHYYLRKKVNSQKIDLDVIREVDLNKLEPWDIQEECRI 67

Query: 62  GSGPQNEWYFFSHKDKKYPTGTRTNRATTAGFWKATGRDKAIHITMANVNSSRRIGMRKT 121
           GS PQN+WYFFSHKDKKYPTGTRTNRAT AGFWKATGRDK I       +  RRIG+RKT
Sbjct: 68  GSTPQNDWYFFSHKDKKYPTGTRTNRATVAGFWKATGRDKII------CSCVRRIGLRKT 121

Query: 122 LVFYTGRAPHGQKTDWIMHEYRLDDDEYSSSSSEVVQED-------GWVVCRVFKKKNH 173
           LVFY GRAPHGQK+DWIMHEYRLDD   S+  ++VV ED       GWVVCRVF+KKN+
Sbjct: 122 LVFYKGRAPHGQKSDWIMHEYRLDDTPMSNGYADVVTEDPMSYNEEGWVVCRVFRKKNY 180

Transcription activator of genes involved in biosynthesis of secondary walls. Together with NST1, required for the secondary cell wall thickening and lignification of sclerenchymatous fibers and secondary xylem vessels (tracheary elements). Seems to repress the secondary cell wall thickening of xylary fibers. May also regulates the secondary cell wall lignification of other tissues. Binds to and activates the promoter of MYB46.

Arabidopsis thaliana (taxid: 3702)

>sp|Q84WP6|NAC43_ARATH NAC domain-containing protein 43 OS=Arabidopsis thaliana GN=NAC043 PE=2 SV=2

 Score =  270 bits (691), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 125/178 (70%), Positives = 143/178 (80%), Gaps = 16/178 (8%)

Query: 5   NGELSVPPGFRFHPTDEELLYYYLRKKVSFEAIDLDVIREVDLNKLEPWDLKDKCRIGSG 64
           NG+  VPPGFRFHPT+EELL YYLRKKV+   IDLDVIR+VDLNKLEPWD+++ C+IG+ 
Sbjct: 11  NGQSQVPPGFRFHPTEEELLQYYLRKKVNSIEIDLDVIRDVDLNKLEPWDIQEMCKIGTT 70

Query: 65  PQNEWYFFSHKDKKYPTGTRTNRATTAGFWKATGRDKAIHITMANVNSSRRIGMRKTLVF 124
           PQN+WYFFSHKDKKYPTGTRTNRAT AGFWKATGRDK I+      ++ RRIGMRKTLVF
Sbjct: 71  PQNDWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKIIY------SNGRRIGMRKTLVF 124

Query: 125 YTGRAPHGQKTDWIMHEYRLDDD----------EYSSSSSEVVQEDGWVVCRVFKKKN 172
           Y GRAPHGQK+DWIMHEYRLDD+          E  S   E  Q++GWVVCR+FKKKN
Sbjct: 125 YKGRAPHGQKSDWIMHEYRLDDNIISPEDVTVHEVVSIIGEASQDEGWVVCRIFKKKN 182

Transcription activator of genes involved in biosynthesis of secondary walls. Together with NST2 and NST3, required for the secondary cell wall thickening of sclerenchymatous fibers, secondary xylem (tracheary elements), and of the anther endocethium, which is necessary for anther dehiscence. May also regulates the secondary cell wall lignification of other tissues.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C878|BRN1_ARATH Protein BEARSKIN1 OS=Arabidopsis thaliana GN=BRN1 PE=2 SV=1

 Score =  265 bits (677), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 122/172 (70%), Positives = 142/172 (82%), Gaps = 14/172 (8%)

Query: 1   MMAGNGELSVPPGFRFHPTDEELLYYYLRKKVSFEAIDLDVIREVDLNKLEPWDLKDKCR 60
           M + NG   VPPGFRFHPTDEELL+YYL+KK+S+E  +++VI+EVDLNK+EPWDL+D+C+
Sbjct: 1   MSSSNG--GVPPGFRFHPTDEELLHYYLKKKISYEKFEMEVIKEVDLNKIEPWDLQDRCK 58

Query: 61  IGSGPQNEWYFFSHKDKKYPTGTRTNRATTAGFWKATGRDKAIHITMANVNSSRRIGMRK 120
           IGS PQNEWYFFSHKD+KYPTG+RTNRAT +GFWKATGRDK I       NS ++IGMRK
Sbjct: 59  IGSTPQNEWYFFSHKDRKYPTGSRTNRATHSGFWKATGRDKCIR------NSYKKIGMRK 112

Query: 121 TLVFYTGRAPHGQKTDWIMHEYRLDDDEYSSSSSEVVQEDGWVVCRVFKKKN 172
           TLVFY GRAPHGQKTDWIMHEYR++D E          EDGWVVCRVFKKKN
Sbjct: 113 TLVFYKGRAPHGQKTDWIMHEYRIEDTEDDPC------EDGWVVCRVFKKKN 158

Transcription activator. Together with SMB and BRN2, regulates cellular maturation of root cap. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M274|NAC66_ARATH NAC domain-containing protein 66 OS=Arabidopsis thaliana GN=NAC066 PE=2 SV=1

 Score =  255 bits (652), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 118/181 (65%), Positives = 140/181 (77%), Gaps = 16/181 (8%)

Query: 2   MAGNGELSVPPGFRFHPTDEELLYYYLRKKVSFEAIDLDVIREVDLNKLEPWDLKDKCRI 61
           ++ NG+  VPPGFRFHPT+EELL YYLRKK+S   IDLDVI ++DLNKLEPWD+++ C+I
Sbjct: 3   ISVNGQSQVPPGFRFHPTEEELLKYYLRKKISNIKIDLDVIPDIDLNKLEPWDIQEMCKI 62

Query: 62  GSGPQNEWYFFSHKDKKYPTGTRTNRATTAGFWKATGRDKAIHITMANVNSSRRIGMRKT 121
           G+ PQN+WYF+SHKDKKYPTGTRTNRATT GFWKATGRDK I+       +  RIGMRKT
Sbjct: 63  GTTPQNDWYFYSHKDKKYPTGTRTNRATTVGFWKATGRDKTIY------TNGDRIGMRKT 116

Query: 122 LVFYTGRAPHGQKTDWIMHEYRLDDDEYSSSSSE----------VVQEDGWVVCRVFKKK 171
           LVFY GRAPHGQK+DWIMHEYRLD+    SS  +          +  ++GWVVCRVFKK 
Sbjct: 117 LVFYKGRAPHGQKSDWIMHEYRLDESVLISSCGDHDVNVETCDVIGSDEGWVVCRVFKKN 176

Query: 172 N 172
           N
Sbjct: 177 N 177

Transcription activator of genes involved in biosynthesis of secondary walls. Together with NST1, required for the secondary cell wall thickening of the anther endocethium, which is necessary for anther dehiscence. May also regulates the secondary cell wall lignification of other tissues such as tracheary elements.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FWX2|NAC7_ARATH NAC domain-containing protein 7 OS=Arabidopsis thaliana GN=NAC007 PE=2 SV=2

 Score =  244 bits (622), Expect = 9e-64,   Method: Compositional matrix adjust.
 Identities = 115/183 (62%), Positives = 141/183 (77%), Gaps = 13/183 (7%)

Query: 10  VPPGFRFHPTDEELLYYYLRKKVSFEAIDLDVIREVDLNKLEPWDLKDKCRIGSGPQNEW 69
           VPPGFRFHPTDEEL+ YYLRKKV+ + I++D I+++DL K+EPWDL++ C+IG   Q++W
Sbjct: 7   VPPGFRFHPTDEELVDYYLRKKVASKRIEIDFIKDIDLYKIEPWDLQELCKIGHEEQSDW 66

Query: 70  YFFSHKDKKYPTGTRTNRATTAGFWKATGRDKAIHITMANVNSSRRIGMRKTLVFYTGRA 129
           YFFSHKDKKYPTGTRTNRAT AGFWKATGRDKAI++  +       IGMRKTLVFY GRA
Sbjct: 67  YFFSHKDKKYPTGTRTNRATKAGFWKATGRDKAIYLRHS------LIGMRKTLVFYKGRA 120

Query: 130 PHGQKTDWIMHEYRLDDDEYSSSSSEVVQEDGWVVCRVFKKKNHINRSY--FQSEVAHEY 187
           P+GQK+DWIMHEYRL+ DE  +      QE+GWVVCRVFKK+    R    + S  +H Y
Sbjct: 121 PNGQKSDWIMHEYRLETDENGTP-----QEEGWVVCRVFKKRLAAVRRMGDYDSSPSHWY 175

Query: 188 DQE 190
           D +
Sbjct: 176 DDQ 178

Transcription factor probably involved in xylem formation.

Arabidopsis thaliana (taxid: 3702)

>sp|Q52QH4|NAC68_ORYSJ NAC domain-containing protein 68 OS=Oryza sativa subsp. japonica GN=NAC68 PE=2 SV=1

 Score =  192 bits (489), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 88/177 (49%), Positives = 124/177 (70%), Gaps = 8/177 (4%)

Query: 7   ELSVPPGFRFHPTDEELLYYYLRKKVSFEAIDLDVIREVDLNKLEPWDLKDKCRIGSGPQ 66
           EL++PPGFRFHPTDEEL+ +YL +KV+ + + + +I EVDL KL+PWDL +K   G   +
Sbjct: 18  ELNLPPGFRFHPTDEELVVHYLCRKVARQPLPVPIIAEVDLYKLDPWDLPEKALFG---R 74

Query: 67  NEWYFFSHKDKKYPTGTRTNRATTAGFWKATGRDKAIHITMANVNSSRRIGMRKTLVFYT 126
            EWYFF+ +D+KYP G+R NRA   G+WKATG DK +    A   S+R +G++K LVFY+
Sbjct: 75  KEWYFFTPRDRKYPNGSRPNRAAGRGYWKATGADKPV----APKGSARTVGIKKALVFYS 130

Query: 127 GRAPHGQKTDWIMHEYRLDDDEYSSSSSEVVQE-DGWVVCRVFKKKNHINRSYFQSE 182
           G+AP G KTDWIMHEYRL D + +    +  Q+ D WV+CR++ KKN+  +   + +
Sbjct: 131 GKAPRGVKTDWIMHEYRLADADRAPGGKKGSQKLDEWVLCRLYNKKNNWEKVKLEQQ 187

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q5CD17|NAC77_ORYSJ NAC domain-containing protein 77 OS=Oryza sativa subsp. japonica GN=NAC77 PE=2 SV=2

 Score =  188 bits (477), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 92/178 (51%), Positives = 119/178 (66%), Gaps = 14/178 (7%)

Query: 5   NGELSVPPGFRFHPTDEELLYYYLRKKVSFEAIDLDVIREVDLNKLEPWDLKDKCRIGSG 64
           +G L +PPGFRFHPTD E++  YL +K+   +     I EVDLNK EPWDL  K ++G  
Sbjct: 14  DGGLFLPPGFRFHPTDAEVILSYLLQKLLNPSFTSLPIGEVDLNKCEPWDLPSKAKMG-- 71

Query: 65  PQNEWYFFSHKDKKYPTGTRTNRATTAGFWKATGRDKAIHITMANVNSS----------R 114
            + EWYFFSHKD KYPTG RTNRAT  G+WKATG+D+ I    A VN+S          +
Sbjct: 72  -EKEWYFFSHKDMKYPTGMRTNRATKEGYWKATGKDREIFRQPAAVNTSSYGGSSNKKKQ 130

Query: 115 RIGMRKTLVFYTGRAPHGQKTDWIMHEYRLDDDEYSSSSS-EVVQEDGWVVCRVFKKK 171
            +GM+KTLVFY GRAP G KT+W+MHE+RL  + ++   +  +  +D WVVC+VF KK
Sbjct: 131 LVGMKKTLVFYMGRAPKGTKTNWVMHEFRLHANLHNHHPNLRLNPKDEWVVCKVFHKK 188

Oryza sativa subsp. japonica (taxid: 39947)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	371
255560971	314	NAC domain-containing protein, putative	0.846	1.0	0.668	1e-126
225462354	312	PREDICTED: protein SOMBRERO [Vitis vinif	0.840	1.0	0.681	1e-124
224112361	318	NAC domain protein, IPR003441 [Populus t	0.854	0.996	0.676	1e-124
147810277	311	hypothetical protein VITISV_029008 [Viti	0.838	1.0	0.681	1e-123
224098812	319	NAC domain protein, IPR003441 [Populus t	0.857	0.996	0.655	1e-120
356525718	328	PREDICTED: protein SOMBRERO-like [Glycin	0.876	0.990	0.647	1e-119
356557078	326	PREDICTED: protein SOMBRERO-like [Glycin	0.873	0.993	0.611	1e-116
357451183	344	NAC domain-containing protein [Medicago	0.897	0.968	0.609	1e-114
297736080	272	unnamed protein product [Vitis vinifera]	0.733	1.0	0.601	1e-105
357117877	364	PREDICTED: NAC domain-containing protein	0.951	0.969	0.520	1e-101

>gi|255560971|ref|XP_002521498.1| NAC domain-containing protein, putative [Ricinus communis] gi|223539295|gb|EEF40887.1| NAC domain-containing protein, putative [Ricinus communis]

 Score =  457 bits (1176), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 248/371 (66%), Positives = 277/371 (74%), Gaps = 57/371 (15%)

Query: 1   MMAGNGELSVPPGFRFHPTDEELLYYYLRKKVSFEAIDLDVIREVDLNKLEPWDLKDKCR 60
           MMAGNG+LSVPPGFRFHPTDEELLYYYL+KKVS+EAIDLDVIREVDLNKLEPWDLK+KCR
Sbjct: 1   MMAGNGQLSVPPGFRFHPTDEELLYYYLKKKVSYEAIDLDVIREVDLNKLEPWDLKEKCR 60

Query: 61  IGSGPQNEWYFFSHKDKKYPTGTRTNRATTAGFWKATGRDKAIHITMANVNSSRRIGMRK 120
           IGSGPQNEWYFFSHKDKKYPTGTRTNRATTAGFWKATGRDKAIH++     +S+RIGMRK
Sbjct: 61  IGSGPQNEWYFFSHKDKKYPTGTRTNRATTAGFWKATGRDKAIHLS-----NSKRIGMRK 115

Query: 121 TLVFYTGRAPHGQKTDWIMHEYRLDDDEYSSSSSEVVQEDGWVVCRVFKKKNHINRSYFQ 180
           TLVFYTGRAPHGQKTDWIMHEYRLDDD     +SE VQEDGWVVCRVFKKKN      F 
Sbjct: 116 TLVFYTGRAPHGQKTDWIMHEYRLDDD-----NSE-VQEDGWVVCRVFKKKNQTRG--FL 167

Query: 181 SEVAHEYDQEEHIISNNNNNYIMKTSATASSAAPEPKQSRRRHLQALYHECNSSFDGSMH 240
            E A    QEEH              A ASS + EPKQ    H+QALY   + +FDGSMH
Sbjct: 168 PEAA----QEEH---------FSHMKAGASSVSMEPKQ---HHMQALY---DYNFDGSMH 208

Query: 241 LPQLFSSESAVITPSFISPMISLNNMDIECSQNLLRLTTSASGSGSGLMQQAAHDQRFNG 300
           LPQLFS ESA + PSF++P +SLN MDIECSQNLLRLT+++     GL+Q     +RF+G
Sbjct: 209 LPQLFSPESAAVPPSFVTP-LSLNTMDIECSQNLLRLTSTS----CGLVQP----ERFHG 259

Query: 301 DWSFLDKLLTSHVHHSAQQQPDQINSHSKCNPSSSSTVVDHVQVASSSTHYQKFPLYYLG 360
           DWSFLDKLL SH           ++   K NPSS   VVD      +S H+QKFP  YLG
Sbjct: 260 DWSFLDKLLASH---------QSLDHQGKGNPSSQ--VVD----MGASVHHQKFPFPYLG 304

Query: 361 CDAEDIMKFSK 371
           C+  DIM+FSK
Sbjct: 305 CET-DIMRFSK 314

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225462354|ref|XP_002269543.1| PREDICTED: protein SOMBRERO [Vitis vinifera]

 Score =  451 bits (1161), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 253/371 (68%), Positives = 279/371 (75%), Gaps = 59/371 (15%)

Query: 1   MMAGNGELSVPPGFRFHPTDEELLYYYLRKKVSFEAIDLDVIREVDLNKLEPWDLKDKCR 60
           MM  +G+LSVPPGFRFHPTDEELL+YYLRKKVS+EAIDLDVIREVDLNKLEPWDLKDKCR
Sbjct: 1   MMPASGQLSVPPGFRFHPTDEELLHYYLRKKVSYEAIDLDVIREVDLNKLEPWDLKDKCR 60

Query: 61  IGSGPQNEWYFFSHKDKKYPTGTRTNRATTAGFWKATGRDKAIHITMANVNSSRRIGMRK 120
           IGSG QNEWYFFSHKDKKYPTGTRTNRAT AGFWKATGRDKAIH++     +S+RIG+RK
Sbjct: 61  IGSGSQNEWYFFSHKDKKYPTGTRTNRATMAGFWKATGRDKAIHLS-----NSKRIGLRK 115

Query: 121 TLVFYTGRAPHGQKTDWIMHEYRLDDDEYSSSSSEVVQEDGWVVCRVFKKKNHINRSYFQ 180
           TLVFYTGRAPHGQKTDWIMHEYRLDDD         VQEDGWVVCRVFKKKNH NR  FQ
Sbjct: 116 TLVFYTGRAPHGQKTDWIMHEYRLDDDNAD------VQEDGWVVCRVFKKKNH-NRG-FQ 167

Query: 181 SEVAHEYDQEEHIISNNNNNYIMKTSATASSAAPEPKQSRRRHLQALYHECNSSFDGSMH 240
           SE A    QEE++         M+ S    SA  EPKQ+    +QALY   + +FDGSMH
Sbjct: 168 SEAA----QEEYLTH-------MRASG---SALLEPKQN----VQALY---DFNFDGSMH 206

Query: 241 LPQLFSSESAVITPSFISPMISLNNMDIECSQNLLRLTTSASGSGSGLMQQAAHDQRFNG 300
           LPQL S ESAV  PSFISP+ SLN MDIECSQNLLRLT+    +G GL+QQ    +R NG
Sbjct: 207 LPQLLSPESAV-PPSFISPL-SLNTMDIECSQNLLRLTS----TGCGLIQQ----ERMNG 256

Query: 301 DWSFLDKLLTSHVHHSAQQQPDQINSHSKCNPSSSSTVVDHVQVASSSTHYQKFPLYYLG 360
           DWSFLDKLL SH      Q  DQ +S +KC+PSS   VVDHV      T  QKFP  YLG
Sbjct: 257 DWSFLDKLLASH------QSLDQ-HSQTKCHPSSQ--VVDHV-----GTSAQKFPFQYLG 302

Query: 361 CDAEDIMKFSK 371
           C+  DI+KFSK
Sbjct: 303 CET-DILKFSK 312

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224112361|ref|XP_002316163.1| NAC domain protein, IPR003441 [Populus trichocarpa] gi|222865203|gb|EEF02334.1| NAC domain protein, IPR003441 [Populus trichocarpa]

 Score =  451 bits (1159), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 251/371 (67%), Positives = 281/371 (75%), Gaps = 54/371 (14%)

Query: 2   MAGNGELSVPPGFRFHPTDEELLYYYLRKKVSFEAIDLDVIREVDLNKLEPWDLKDKCRI 61
           MAGNG+LSVPPGFRFHPTDEELLYYYLRKKVS+EAIDLDVIREVDLNKLEPWDLKDKCRI
Sbjct: 1   MAGNGQLSVPPGFRFHPTDEELLYYYLRKKVSYEAIDLDVIREVDLNKLEPWDLKDKCRI 60

Query: 62  GSGPQNEWYFFSHKDKKYPTGTRTNRATTAGFWKATGRDKAIHITMANVNSSRRIGMRKT 121
           GSGPQNEWYFFSHKDKKYPTGTRTNRATTAGFWKATGRDKAIH++     +S+RIGMRKT
Sbjct: 61  GSGPQNEWYFFSHKDKKYPTGTRTNRATTAGFWKATGRDKAIHLS-----NSQRIGMRKT 115

Query: 122 LVFYTGRAPHGQKTDWIMHEYRLDDDEYSSSSSEVVQEDGWVVCRVFKKKNHINRSYFQS 181
           LVFYTGRAPHGQKTDWIMHEYRLDDD     +SE VQEDGWVVCRVFKKKN      F  
Sbjct: 116 LVFYTGRAPHGQKTDWIMHEYRLDDD-----NSE-VQEDGWVVCRVFKKKNQTRG--FLP 167

Query: 182 EVAHEYDQEEHIISNNNNNYIMKTSATASSAAPEPKQSRRRHLQALYHECNSSFDGSMHL 241
           EV+    QEEH           +  A+ASS   EPKQ+   H+Q++Y +   +FDGSMHL
Sbjct: 168 EVS----QEEH---------FSQMKASASSLPLEPKQN---HMQSIYDDY--TFDGSMHL 209

Query: 242 PQLFSSESAVITPSFISPMISLNNM-DIECSQNLLRLTTSASGSGSGLMQQAAHDQRFNG 300
           PQLFS ESAV  PSF+SP+ SLNNM DIECSQNLLRLT+    +G GL+Q A    RFNG
Sbjct: 210 PQLFSPESAV-APSFVSPL-SLNNMDDIECSQNLLRLTS----TGCGLVQPAG---RFNG 260

Query: 301 DWSFLDKLLTSHVHHSAQQQPDQINSHSKCNPSSSSTVVDHVQVASSSTHYQKFPLYYLG 360
           DWSFLDKLL S      QQ  D  + H +   +SSS +VDHV  ++     QKFP  YLG
Sbjct: 261 DWSFLDKLLAS------QQNLDH-HQHYQNKGNSSSQIVDHVGAST-----QKFPFQYLG 308

Query: 361 CDAEDIMKFSK 371
            +  DI++FSK
Sbjct: 309 FET-DILRFSK 318

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147810277|emb|CAN64706.1| hypothetical protein VITISV_029008 [Vitis vinifera]

 Score =  449 bits (1155), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 252/370 (68%), Positives = 278/370 (75%), Gaps = 59/370 (15%)

Query: 2   MAGNGELSVPPGFRFHPTDEELLYYYLRKKVSFEAIDLDVIREVDLNKLEPWDLKDKCRI 61
           M  +G+LSVPPGFRFHPTDEELL+YYLRKKVS+EAIDLDVIREVDLNKLEPWDLKDKCRI
Sbjct: 1   MPASGQLSVPPGFRFHPTDEELLHYYLRKKVSYEAIDLDVIREVDLNKLEPWDLKDKCRI 60

Query: 62  GSGPQNEWYFFSHKDKKYPTGTRTNRATTAGFWKATGRDKAIHITMANVNSSRRIGMRKT 121
           GSG QNEWYFFSHKDKKYPTGTRTNRAT AGFWKATGRDKAIH++     +S+RIG+RKT
Sbjct: 61  GSGSQNEWYFFSHKDKKYPTGTRTNRATMAGFWKATGRDKAIHLS-----NSKRIGLRKT 115

Query: 122 LVFYTGRAPHGQKTDWIMHEYRLDDDEYSSSSSEVVQEDGWVVCRVFKKKNHINRSYFQS 181
           LVFYTGRAPHGQKTDWIMHEYRLDDD         VQEDGWVVCRVFKKKNH NR  FQS
Sbjct: 116 LVFYTGRAPHGQKTDWIMHEYRLDDDNAD------VQEDGWVVCRVFKKKNH-NRG-FQS 167

Query: 182 EVAHEYDQEEHIISNNNNNYIMKTSATASSAAPEPKQSRRRHLQALYHECNSSFDGSMHL 241
           E A    QEE++         M+ S    SA  EPKQ+    +QALY   + +FDGSMHL
Sbjct: 168 EAA----QEEYLTH-------MRASG---SALLEPKQN----VQALY---DFNFDGSMHL 206

Query: 242 PQLFSSESAVITPSFISPMISLNNMDIECSQNLLRLTTSASGSGSGLMQQAAHDQRFNGD 301
           PQL S ESAV  PSFISP+ SLN MDIECSQNLLRLT+    +G GL+QQ    +R NGD
Sbjct: 207 PQLLSPESAV-PPSFISPL-SLNTMDIECSQNLLRLTS----TGCGLIQQ----ERMNGD 256

Query: 302 WSFLDKLLTSHVHHSAQQQPDQINSHSKCNPSSSSTVVDHVQVASSSTHYQKFPLYYLGC 361
           WSFLDKLL SH      Q  DQ +S +KC+PSS   VVDHV      T  QKFP  YLGC
Sbjct: 257 WSFLDKLLASH------QSLDQ-HSQTKCHPSSQ--VVDHV-----GTSAQKFPFQYLGC 302

Query: 362 DAEDIMKFSK 371
           +  DI+KFSK
Sbjct: 303 ET-DILKFSK 311

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224098812|ref|XP_002311276.1| NAC domain protein, IPR003441 [Populus trichocarpa] gi|222851096|gb|EEE88643.1| NAC domain protein, IPR003441 [Populus trichocarpa]

 Score =  437 bits (1123), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 244/372 (65%), Positives = 272/372 (73%), Gaps = 54/372 (14%)

Query: 1   MMAGNGELSVPPGFRFHPTDEELLYYYLRKKVSFEAIDLDVIREVDLNKLEPWDLKDKCR 60
           MM GNG+LSVPPGFRFHPTDEELLYYYLRKKVS+EAIDLDVIREVDLNKLEPWDL+DKC+
Sbjct: 1   MMTGNGQLSVPPGFRFHPTDEELLYYYLRKKVSYEAIDLDVIREVDLNKLEPWDLRDKCK 60

Query: 61  IGSGPQNEWYFFSHKDKKYPTGTRTNRATTAGFWKATGRDKAIHITMANVNSSRRIGMRK 120
           IGSGPQNEWYFFSHKDKKYPTGTRTNRATTAGFWKATGRDKAIHI+     +S+RIGMRK
Sbjct: 61  IGSGPQNEWYFFSHKDKKYPTGTRTNRATTAGFWKATGRDKAIHIS-----NSQRIGMRK 115

Query: 121 TLVFYTGRAPHGQKTDWIMHEYRLDDDEYSSSSSEVVQEDGWVVCRVFKKKNHINRSYFQ 180
           TLVFYTGRAPHGQKTDWIMHEYRLDDD     +SE VQEDGWVVCRVFKKKN      F 
Sbjct: 116 TLVFYTGRAPHGQKTDWIMHEYRLDDD-----NSE-VQEDGWVVCRVFKKKNQTRG--FL 167

Query: 181 SEVAHEYDQEEHIISNNNNNYIMKTSATASSAAPEPKQSRRRHLQALYHECNSSFDGSMH 240
            EV+ E              +     A+ASS   +PKQ+   HLQ+LY +   + DGSMH
Sbjct: 168 PEVSQEV-------------HFSHMKASASSFPLDPKQN---HLQSLYQDY--TLDGSMH 209

Query: 241 LPQLFSSESAVITPSFISPMISLNNM-DIECSQNLLRLTTSASGSGSGLMQQAAHDQRFN 299
           LPQLFS +SAV  PSF+SP+ SLNNM DIECSQNLLRLT     SG G +  A    RFN
Sbjct: 210 LPQLFSPDSAV-APSFVSPL-SLNNMNDIECSQNLLRLTP----SGCGFVHPAG---RFN 260

Query: 300 GDWSFLDKLLTSHVHHSAQQQPDQINSHSKCNPSSSSTVVDHVQVASSSTHYQKFPLYYL 359
           GDWSFLDKLL SH +   QQ       H +   +SSS +VD V      T  QKFP  +L
Sbjct: 261 GDWSFLDKLLASHQNLDHQQ-------HYQNKRNSSSQIVDPV-----GTSTQKFPFQHL 308

Query: 360 GCDAEDIMKFSK 371
           G +  DI++FSK
Sbjct: 309 GFET-DILRFSK 319

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356525718|ref|XP_003531470.1| PREDICTED: protein SOMBRERO-like [Glycine max]

 Score =  436 bits (1120), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 242/374 (64%), Positives = 270/374 (72%), Gaps = 49/374 (13%)

Query: 1   MMAGNGELSVPPGFRFHPTDEELLYYYLRKKVSFEAIDLDVIREVDLNKLEPWDLKDKCR 60
           MM GNG+L+VPPGFRFHPTDEELLYYYLRKKVS+EAIDLDVIREVDLNKLEPWDL DKCR
Sbjct: 1   MMPGNGQLTVPPGFRFHPTDEELLYYYLRKKVSYEAIDLDVIREVDLNKLEPWDLNDKCR 60

Query: 61  IGSGPQNEWYFFSHKDKKYPTGTRTNRATTAGFWKATGRDKAIHITMANVNSSRRIGMRK 120
           IGSGPQNEWYFFSHKDKKYPTGTRTNRATTAGFWKATGRDKAI+ T     +S+RIGMRK
Sbjct: 61  IGSGPQNEWYFFSHKDKKYPTGTRTNRATTAGFWKATGRDKAIYHT-----NSKRIGMRK 115

Query: 121 TLVFYTGRAPHGQKTDWIMHEYRLDDDEYSSSSSEVVQEDGWVVCRVFKKKNHINRSYFQ 180
           TLVFYTGRAPHGQKTDWIMHEYRLD+D+        +QEDGWVVCRVFKKK+  NR  FQ
Sbjct: 116 TLVFYTGRAPHGQKTDWIMHEYRLDEDDAD------IQEDGWVVCRVFKKKSQ-NRG-FQ 167

Query: 181 SEVAHEYDQEEHIISNNNNNYIMKTSATASSAAPEPKQSRRRHLQALYHECNSSFDGSMH 240
            E+    ++EEH+ ++          A+      EPK    +  Q LY   N  FDG+MH
Sbjct: 168 QEI----EEEEHLTTH--------MRASGHCQVLEPKHHHMQ--QGLYDHYN--FDGTMH 211

Query: 241 LPQLFSSESAVITPSFISPMISLNNMDI-ECSQNLLRLTTSASGSGSGLM-QQAAHDQRF 298
           LPQLFS ESAV  P+  S   S+N MDI +CSQNLLRLTT+ +G G  LM QQ    +RF
Sbjct: 212 LPQLFSQESAVAPPTNSSLASSMNAMDILQCSQNLLRLTTT-TGCGLNLMQQQQQQGERF 270

Query: 299 NGDWSFLDKLLTSHVHHSAQQQPDQINSHSKCNPSSSSTVVDHVQVASSSTHYQKFPLYY 358
           +GDWSFLDKLL S  HH   Q        SKCNP +      H Q AS  T  QKFP +Y
Sbjct: 271 SGDWSFLDKLLAS--HHGMDQ--------SKCNPPT------HHQGASVGTSAQKFPFHY 314

Query: 359 LGCD-AEDIMKFSK 371
           LGCD   DIMKFSK
Sbjct: 315 LGCDTTHDIMKFSK 328

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356557078|ref|XP_003546845.1| PREDICTED: protein SOMBRERO-like [Glycine max]

 Score =  423 bits (1087), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 228/373 (61%), Positives = 261/373 (69%), Gaps = 49/373 (13%)

Query: 1   MMAGNGELSVPPGFRFHPTDEELLYYYLRKKVSFEAIDLDVIREVDLNKLEPWDLKDKCR 60
           MM GNG+L+VPPGFRFHPTDEELLYYYLRKKVS+E IDLDVIREVDLNKLEPWDLKDKCR
Sbjct: 1   MMPGNGQLTVPPGFRFHPTDEELLYYYLRKKVSYEVIDLDVIREVDLNKLEPWDLKDKCR 60

Query: 61  IGSGPQNEWYFFSHKDKKYPTGTRTNRATTAGFWKATGRDKAIHITMANVNSSRRIGMRK 120
           IGSGPQNEWYFFSHKDKKYPTGTRTNRATTAGFWKATGRDK+I+ T     +S+RIGMRK
Sbjct: 61  IGSGPQNEWYFFSHKDKKYPTGTRTNRATTAGFWKATGRDKSIYHT-----NSKRIGMRK 115

Query: 121 TLVFYTGRAPHGQKTDWIMHEYRLDDDEYSSSSSEVVQEDGWVVCRVFKKKNHINRSYFQ 180
           TLVFYTGRAPHGQKTDWIMHEYRLD+D+        VQEDGWVVCRVFKKKN        
Sbjct: 116 TLVFYTGRAPHGQKTDWIMHEYRLDEDDAD------VQEDGWVVCRVFKKKN-------- 161

Query: 181 SEVAHEYDQEEHIISNNNNNYIMKTSATASSAAPEPKQSRRRHLQALYHECNSSFDGSMH 240
                    +              T+   +S   +  + +  H+Q   ++ + +FDG+MH
Sbjct: 162 ---------QSRGFQQELEEEEHLTTHMRASGPCQVLEQKHLHMQGGPYD-HYNFDGTMH 211

Query: 241 LPQLFSSESAVITPSFISPMISLNNMDI-ECSQNLLRLTTSASGSGSGLMQQAAHDQRFN 299
           LPQLFS ESA+  P+  S  +S+N MDI ECSQNLLRLTT  +G G  LMQQ   ++RF+
Sbjct: 212 LPQLFSPESAIAPPTNSSLALSMNAMDILECSQNLLRLTT--TGCGLNLMQQ-QQEERFS 268

Query: 300 GDWSFLDKLLTSHVHHSAQQQPDQINSHSKCNPSSSSTVVDHVQVASSSTHYQKFPLYYL 359
           GDWSFLDKLL S  HH   Q        SKCNP +     +H    +  T  QKFP +YL
Sbjct: 269 GDWSFLDKLLAS--HHGMDQ--------SKCNPPT-----NHHAATAVGTSAQKFPFHYL 313

Query: 360 GCD-AEDIMKFSK 371
           GCD   DIMKFSK
Sbjct: 314 GCDTTHDIMKFSK 326

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357451183|ref|XP_003595868.1| NAC domain-containing protein [Medicago truncatula] gi|124360182|gb|ABN08195.1| No apical meristem (NAM) protein [Medicago truncatula] gi|355484916|gb|AES66119.1| NAC domain-containing protein [Medicago truncatula]

 Score =  416 bits (1069), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 233/382 (60%), Positives = 267/382 (69%), Gaps = 49/382 (12%)

Query: 1   MMAGNGELSVPPGFRFHPTDEELLYYYLRKKVSFEAIDLDVIREVDLNKLEPWDLKDKCR 60
           MM G+GEL+VPPGFRFHPTDEELLYYYLRKKVS+EAIDLDVIREVDLN+LEPWDLKDKCR
Sbjct: 1   MMQGSGELTVPPGFRFHPTDEELLYYYLRKKVSYEAIDLDVIREVDLNRLEPWDLKDKCR 60

Query: 61  IGSGPQNEWYFFSHKDKKYPTGTRTNRATTAGFWKATGRDKAIHITMANVNSSRRIGMRK 120
           IGSGPQNEWYFFSHKDKKYPTGTRTNRATTAGFWKATGRDKAI+ T     +S+RIGMRK
Sbjct: 61  IGSGPQNEWYFFSHKDKKYPTGTRTNRATTAGFWKATGRDKAIYHT-----NSKRIGMRK 115

Query: 121 TLVFYTGRAPHGQKTDWIMHEYRLDDDEYSSSSSEVVQEDGWVVCRVFKKKNHINRSYFQ 180
           TLVFYTGRAPHG KTDWIMHEYRLDDD+ +      VQEDGWVVCRVFKKKN  NRSY Q
Sbjct: 116 TLVFYTGRAPHGHKTDWIMHEYRLDDDDNAE-----VQEDGWVVCRVFKKKN-TNRSYQQ 169

Query: 181 SEVAHEYDQEEHIISNNNNNYIMKTSATASSAAPEPKQSRRRHLQALYHECN---SSFDG 237
                ++    H+ S N  N+ +           EPK         LY   N   ++FDG
Sbjct: 170 EIEEEDHHMINHMRSTNGPNHFL-----------EPKHHHHMQQLGLYDYNNNTTTTFDG 218

Query: 238 SMHLPQLFSSESAVITPSFISPMISLNN--MDI-ECSQNLLRLTTSASGSGSGLMQQAAH 294
           ++HLPQLFS ESA+  P       S +N  MDI ECSQNLLRLTT+ + SG  LMQQ   
Sbjct: 219 TIHLPQLFSPESAIAAPP-----TSFHNSSMDILECSQNLLRLTTTNTSSGLNLMQQQQQ 273

Query: 295 --DQRFNG-DWSFLDKLLTSHVHHSAQQQPDQINSHSK-CN-PSSSSTVVDHVQVASSST 349
             ++  +G DWSFLDKLL SH           +N  +K CN P++       V  +S+  
Sbjct: 274 QGERLISGSDWSFLDKLLASH-------NGMDLNLRNKLCNTPNNHQAAPSAVGTSSA-- 324

Query: 350 HYQKFPLYYLGCDAEDIMKFSK 371
             QKFP +YLGC++ DIMKFSK
Sbjct: 325 --QKFPFHYLGCESHDIMKFSK 344

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297736080|emb|CBI24118.3| unnamed protein product [Vitis vinifera]

 Score =  389 bits (999), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 223/371 (60%), Positives = 245/371 (66%), Gaps = 99/371 (26%)

Query: 1   MMAGNGELSVPPGFRFHPTDEELLYYYLRKKVSFEAIDLDVIREVDLNKLEPWDLKDKCR 60
           MM  +G+LSVPPGFRFHPTDEELL+YYLRKKVS+EAIDLDVIREVDLNKLEPWDLKDKCR
Sbjct: 1   MMPASGQLSVPPGFRFHPTDEELLHYYLRKKVSYEAIDLDVIREVDLNKLEPWDLKDKCR 60

Query: 61  IGSGPQNEWYFFSHKDKKYPTGTRTNRATTAGFWKATGRDKAIHITMANVNSSRRIGMRK 120
           IGSG QNEWYFFSHKDKKYPTGTRTNRAT AGFWKATGRDKAIH++     +S+RIG+RK
Sbjct: 61  IGSGSQNEWYFFSHKDKKYPTGTRTNRATMAGFWKATGRDKAIHLS-----NSKRIGLRK 115

Query: 121 TLVFYTGRAPHGQKTDWIMHEYRLDDDEYSSSSSEVVQEDGWVVCRVFKKKNHINRSYFQ 180
           TLVFYTGRAPHGQKTDWIMHEYRLDDD         VQEDGWVVCRVFKKKNH NR  FQ
Sbjct: 116 TLVFYTGRAPHGQKTDWIMHEYRLDDDNAD------VQEDGWVVCRVFKKKNH-NRG-FQ 167

Query: 181 SEVAHEYDQEEHIISNNNNNYIMKTSATASSAAPEPKQSRRRHLQALYHECNSSFDGSMH 240
           SE A    QEE++         M+ S    SA  EPKQ+    +QALY   + +FDGSMH
Sbjct: 168 SEAA----QEEYLTH-------MRASG---SALLEPKQN----VQALY---DFNFDGSMH 206

Query: 241 LPQLFSSESAVITPSFISPMISLNNMDIECSQNLLRLTTSASGSGSGLMQQAAHDQRFNG 300
           LPQL S ESAV  PSFISP+ SLN MDIECSQNLLRLT++                    
Sbjct: 207 LPQLLSPESAV-PPSFISPL-SLNTMDIECSQNLLRLTST-------------------- 244

Query: 301 DWSFLDKLLTSHVHHSAQQQPDQINSHSKCNPSSSSTVVDHVQVASSSTHYQKFPLYYLG 360
                   +  HV  SAQ                                  KFP  YLG
Sbjct: 245 --------VVDHVGTSAQ----------------------------------KFPFQYLG 262

Query: 361 CDAEDIMKFSK 371
           C+  DI+KFSK
Sbjct: 263 CET-DILKFSK 272

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357117877|ref|XP_003560688.1| PREDICTED: NAC domain-containing protein 76-like [Brachypodium distachyon]

 Score =  375 bits (964), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 199/382 (52%), Positives = 251/382 (65%), Gaps = 29/382 (7%)

Query: 1   MMAGNGELSVPPGFRFHPTDEELLYYYLRKKVSFEAIDLDVIREVDLNKLEPWDLKDKCR 60
           M   +G +SVPPGFRFHPTDEELLYYYLRKKV++EAIDLDVIRE+DLNKLEPWDLKD+CR
Sbjct: 1   MHPSSGAVSVPPGFRFHPTDEELLYYYLRKKVAYEAIDLDVIREIDLNKLEPWDLKDRCR 60

Query: 61  IGSGPQNEWYFFSHKDKKYPTGTRTNRATTAGFWKATGRDKAIHITMANVNSSRRIGMRK 120
           IG+GPQNEWYFFSHKDKKYPTGTRTNRATTAGFWKATGRDKAI +     +S+RRIGMRK
Sbjct: 61  IGTGPQNEWYFFSHKDKKYPTGTRTNRATTAGFWKATGRDKAIFLG----SSARRIGMRK 116

Query: 121 TLVFYTGRAPHGQKTDWIMHEYRLDDDEYSSSSSEVVQEDGWVVCRVFKKKNHINRSYFQ 180
           TLVFY GRAPHG+KTDWIMHEYRLD+D         +QEDGWVVCRVF KK++       
Sbjct: 117 TLVFYVGRAPHGRKTDWIMHEYRLDEDNVD------IQEDGWVVCRVFTKKSYPRGINPA 170

Query: 181 SEVAHEYDQEEHII---SNNNNNYIMKTSATASSAAPEPKQSRRRHLQALYHECNSSFDG 237
              A E D+  H     +  +    M+TS       P     +++H          SFD 
Sbjct: 171 EMAAFEDDELLHPFPGQAQASAAGAMQTSKHIHMNNPHLMHQQQQHYDY------PSFDA 224

Query: 238 SMHLPQLFSSESAVITPSFI--SPMISLNNMDIECSQNLLRLTTSASGSGS---GLMQQA 292
           SM LPQL S+E  +  PSF+   P +++ ++D+ECSQNL++LT++ S +G    G +  +
Sbjct: 225 SMQLPQLMSTEHEL--PSFLPGPPAVAMTSLDVECSQNLMKLTSNGSSNGMLHHGCISTS 282

Query: 293 AHDQRFNG-DWSFLDKLLTSH--VHHSAQQQPDQINSHSKCNPSSSSTVVDHVQVASSST 349
             D R    DWS LDKLL SH  +    Q       + +   P      +  +  ++ ++
Sbjct: 283 GGDPRLAATDWSVLDKLLASHQNLDQLFQGMVTATAAAASMAPYQQQQQLMELGSSNGNS 342

Query: 350 HYQKFPLYYLGCDAEDIMKFSK 371
             Q+ PL YLGC+A D+++FSK
Sbjct: 343 SMQRLPLQYLGCEAADLLRFSK 364

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	371
TAIR|locus:2019833	371	SMB "SOMBRERO" [Arabidopsis th	0.921	0.921	0.496	7.5e-89
UNIPROTKB|Q5Z6B6	276	NAC76 "NAC domain-containing p	0.660	0.887	0.551	5.2e-75
TAIR|locus:2122804	341	NAC070 "NAC domain containing	0.609	0.662	0.532	3.3e-65
TAIR|locus:2044360	365	NST1 "NAC SECONDARY WALL THICK	0.436	0.443	0.634	6.9e-61
TAIR|locus:2035604	358	NAC012 "NAC domain containing	0.439	0.455	0.659	2.4e-60
TAIR|locus:2196641	305	NAC015 "NAC domain containing	0.425	0.518	0.656	8.1e-60
TAIR|locus:2079562	334	NAC066 "NAC domain protein 66"	0.436	0.485	0.606	2.6e-57
TAIR|locus:2122219	377	NAC076 "NAC domain containing	0.409	0.403	0.650	6.1e-55
TAIR|locus:2060979	365	VND1 "vascular related NAC-dom	0.444	0.452	0.597	3.4e-54
TAIR|locus:2026232	394	ANAC026 "Arabidopsis NAC domai	0.471	0.444	0.563	6.1e-54

TAIR|locus:2019833 SMB "SOMBRERO" [Arabidopsis thaliana (taxid:3702)]

 Score = 887 (317.3 bits), Expect = 7.5e-89, P = 7.5e-89
 Identities = 194/391 (49%), Positives = 240/391 (61%)

Query:     2 MAGNGELSVPPGFRFHPTDEELLYYYLRKKVSFEAIDLDVIREVDLNKLEPWDLKDKCRI 61
             +AG G+LSVPPGFRFHPT+EELLYYYL+KKVS+E IDLDVIREVDLNKLEPW+LK+KCRI
Sbjct:     9 VAGGGQLSVPPGFRFHPTEEELLYYYLKKKVSYEPIDLDVIREVDLNKLEPWELKEKCRI 68

Query:    62 GSGPQNEWYFFSHKDKKYPXXXXXXXXXXXXFWKATGRDKAIHITMANVNSSRRIGMRKT 121
             GSGPQNEWYFFSHKDKKYP            FWKATGRDK+IH+     NSS++IG+RKT
Sbjct:    69 GSGPQNEWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKSIHL-----NSSKKIGLRKT 123

Query:   122 LVFYTGRAPHGQKTDWIMHEYRLDDDEYXXXXXEVVQEDGWVVCRVFKKKNHINRSYFQS 181
             LVFYTGRAPHGQKT+WIMHEYRLDD E        +QEDGWVVCRVFKKKNH  R + Q 
Sbjct:   124 LVFYTGRAPHGQKTEWIMHEYRLDDSE------NEIQEDGWVVCRVFKKKNHF-RGFHQE 176

Query:   182 EVAHEYDQEEHIISNNNNNYIMKXXXXXXXXXP---EPKQSRRRH------LQALYHE-C 231
             +    +   ++I +NN++++            P    P      H      +    HE  
Sbjct:   177 QEQDHHHHHQYISTNNDHDHHHHIDSNSNNHSPLILHPLDHHHHHHHIGRQIHMPLHEFA 236

Query:   232 NSSFDGSMHLPQLFSSESAVITPSFIS---PMIS-LNNMDIECSQNXXXXXXXXXXXXXX 287
             N+   GSMHLPQLFS +SA    +  +   P +S +N  DIECSQN              
Sbjct:   237 NTLSHGSMHLPQLFSPDSAAAAAAAAASAQPFVSPINTTDIECSQN-------------- 282

Query:   288 XMQQAAHDQRFNGDWSFLDKLLTS-HVHHSAQQQPD--QINXXXXXXXXXXXTVVDHVQV 344
              + +   +  + GDWSFLDKLLT+ +++   QQQ    Q                DH+  
Sbjct:   283 -LLRLTSNNNYGGDWSFLDKLLTTGNMNQQQQQQVQNHQAKCFGDLSNNDNNDQADHLGN 341

Query:   345 ----ASSSTHYQKFPLYYLGCDAEDIMKFSK 371
                 +SSS   Q+FP +YLG DA +++KF K
Sbjct:   342 NNGGSSSSPVNQRFPFHYLGNDA-NLLKFPK 371

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0010455 "positive regulation of cell fate commitment" evidence=IMP

GO:0048829 "root cap development" evidence=IMP

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IMP

GO:0009834 "secondary cell wall biogenesis" evidence=IMP

GO:0003002 "regionalization" evidence=IMP

UNIPROTKB|Q5Z6B6 NAC76 "NAC domain-containing protein 76" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 699 (251.1 bits), Expect = 5.2e-75, Sum P(2) = 5.2e-75
 Identities = 145/263 (55%), Positives = 171/263 (65%)

Query:     1 MMAGNGELSVPPGFRFHPTDEELLYYYLRKKVSFEAIDLDVIREVDLNKLEPWDLKDKCR 60
             M    G LSVPPGFRFHPTDEELLYYYLRKKV++EAIDLDVIRE+DLNKLEPWDLKD+CR
Sbjct:     1 MHPSGGALSVPPGFRFHPTDEELLYYYLRKKVAYEAIDLDVIREIDLNKLEPWDLKDRCR 60

Query:    61 IGSGPQNEWYFFSHKDKKYPXXXXXXXXXXXXFWKATGRDKAIHITMANVNSSRRIGMRK 120
             IG+GPQNEWYFFSHKDKKYP            FWKATGRDKAI +  AN   + RIGMRK
Sbjct:    61 IGTGPQNEWYFFSHKDKKYPTGTRTNRATTAGFWKATGRDKAIFL--AN---ACRIGMRK 115

Query:   121 TLVFYTGRAPHGQKTDWIMHEYRLDDDEYXXXXXEVVQEDGWVVCRVFKKKNHINRSYFQ 180
             TLVFY GRAPHG+KTDWIMHEYRLD D         VQEDGWVVCRVF KK++  R    
Sbjct:   116 TLVFYVGRAPHGKKTDWIMHEYRLDQDNVD------VQEDGWVVCRVFMKKSY-QRGLNP 168

Query:   181 SEVAHEYDQEEHIISNNNNNYIMKXXXXXXXXXPEPKQS--RRRHLQALYHECNS--SFD 236
             +++A   D +  ++ ++++ +                       HL   +H  +   SFD
Sbjct:   169 ADMAAVDDDD--LLHHHHHPFPPAQLHGGAADHKHDGAGGHHHHHLMQPHHHYDDFPSFD 226

Query:   237 GSMHLPQLFSSESAVITPSFISP 259
              SM LPQL S++     P  + P
Sbjct:   227 PSMQLPQLMSADQPPPPPPSLLP 249

GO:0005634 "nucleus" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0009834 "secondary cell wall biogenesis" evidence=ISS

GO:0048829 "root cap development" evidence=ISS

TAIR|locus:2122804 NAC070 "NAC domain containing protein 70" [Arabidopsis thaliana (taxid:3702)]

 Score = 629 (226.5 bits), Expect = 3.3e-65, Sum P(2) = 3.3e-65
 Identities = 130/244 (53%), Positives = 154/244 (63%)

Query:     3 AGNGELSVPPGFRFHPTDEELLYYYLRKKVSFEAIDLDVIREVDLNKLEPWDLKDKCRIG 62
             + NG   VPPGFRFHPTDEELL+YYL+KK+S++  +++VIREVDLNKLEPWDL+++C+IG
Sbjct:     4 SSNG--GVPPGFRFHPTDEELLHYYLKKKISYQKFEMEVIREVDLNKLEPWDLQERCKIG 61

Query:    63 SGPQNEWYFFSHKDKKYPXXXXXXXXXXXXFWKATGRDKAIHITMANVNSSRRIGMRKTL 122
             S PQNEWYFFSHKD+KYP            FWKATGRDK I       NS ++IGMRKTL
Sbjct:    62 STPQNEWYFFSHKDRKYPTGSRTNRATHAGFWKATGRDKCIR------NSYKKIGMRKTL 115

Query:   123 VFYTGRAPHGQKTDWIMHEYRLDDDEYXXXXXEVVQEDGWVVCRVFKKKNHINRSYFQSE 182
             VFY GRAPHGQKTDWIMHEYRL+D +          EDGWVVCRVF KKN        S 
Sbjct:   116 VFYKGRAPHGQKTDWIMHEYRLEDADDPQANPS---EDGWVVCRVFMKKNLFKVVNEGSS 172

Query:   183 VAHEYDQEEHIISNNNNNYIMKXXXXXXXXXPEPKQSRRRHLQALYHECNSSFDGSMH-L 241
               +  DQ  H  SNNN+                P Q  R H  A+  E N   D ++H  
Sbjct:   173 SINSLDQHNHDASNNNH----ALQARSFMHRDSPYQLVRNH-GAMTFELNKP-DLALHQY 226

Query:   242 PQLF 245
             P +F
Sbjct:   227 PPIF 230

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009834 "secondary cell wall biogenesis" evidence=IMP

GO:0010628 "positive regulation of gene expression" evidence=IEP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IMP

GO:0048829 "root cap development" evidence=IMP

TAIR|locus:2044360 NST1 "NAC SECONDARY WALL THICKENING PROMOTING FACTOR1" [Arabidopsis thaliana (taxid:3702)]

 Score = 603 (217.3 bits), Expect = 6.9e-61, Sum P(2) = 6.9e-61
 Identities = 113/178 (63%), Positives = 131/178 (73%)

Query:     5 NGELSVPPGFRFHPTDEELLYYYLRKKVSFEAIDLDVIREVDLNKLEPWDLKDKCRIGSG 64
             NG+  VPPGFRFHPT+EELL YYLRKKV+   IDLDVIR+VDLNKLEPWD+++ C+IG+ 
Sbjct:    11 NGQSQVPPGFRFHPTEEELLQYYLRKKVNSIEIDLDVIRDVDLNKLEPWDIQEMCKIGTT 70

Query:    65 PQNEWYFFSHKDKKYPXXXXXXXXXXXXFWKATGRDKAIHITMANVNSSRRIGMRKTLVF 124
             PQN+WYFFSHKDKKYP            FWKATGRDK I+      ++ RRIGMRKTLVF
Sbjct:    71 PQNDWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKIIY------SNGRRIGMRKTLVF 124

Query:   125 YTGRAPHGQKTDWIMHEYRLDDD----------EYXXXXXEVVQEDGWVVCRVFKKKN 172
             Y GRAPHGQK+DWIMHEYRLDD+          E      E  Q++GWVVCR+FKKKN
Sbjct:   125 YKGRAPHGQKSDWIMHEYRLDDNIISPEDVTVHEVVSIIGEASQDEGWVVCRIFKKKN 182

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0009793 "embryo development ending in seed dormancy" evidence=NAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009834 "secondary cell wall biogenesis" evidence=IGI;IMP

GO:0009901 "anther dehiscence" evidence=IGI

GO:0009809 "lignin biosynthetic process" evidence=IGI

GO:0010047 "fruit dehiscence" evidence=IMP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

TAIR|locus:2035604 NAC012 "NAC domain containing protein 12" [Arabidopsis thaliana (taxid:3702)]

 Score = 618 (222.6 bits), Expect = 2.4e-60, P = 2.4e-60
 Identities = 116/176 (65%), Positives = 132/176 (75%)

Query:     5 NGELSVPPGFRFHPTDEELLYYYLRKKVSFEAIDLDVIREVDLNKLEPWDLKDKCRIGSG 64
             NG+  VPPGFRFHPT+EELL+YYLRKKV+ + IDLDVIREVDLNKLEPWD++++CRIGS 
Sbjct:    11 NGQSKVPPGFRFHPTEEELLHYYLRKKVNSQKIDLDVIREVDLNKLEPWDIQEECRIGST 70

Query:    65 PQNEWYFFSHKDKKYPXXXXXXXXXXXXFWKATGRDKAIHITMANVNSSRRIGMRKTLVF 124
             PQN+WYFFSHKDKKYP            FWKATGRDK I       +  RRIG+RKTLVF
Sbjct:    71 PQNDWYFFSHKDKKYPTGTRTNRATVAGFWKATGRDKII------CSCVRRIGLRKTLVF 124

Query:   125 YTGRAPHGQKTDWIMHEYRLDDDEYXXXXXEVVQED-------GWVVCRVFKKKNH 173
             Y GRAPHGQK+DWIMHEYRLDD        +VV ED       GWVVCRVF+KKN+
Sbjct:   125 YKGRAPHGQKSDWIMHEYRLDDTPMSNGYADVVTEDPMSYNEEGWVVCRVFRKKNY 180

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009834 "secondary cell wall biogenesis" evidence=IGI;IMP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0009809 "lignin biosynthetic process" evidence=IGI

GO:0010047 "fruit dehiscence" evidence=IMP

GO:0043565 "sequence-specific DNA binding" evidence=IDA

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

TAIR|locus:2196641 NAC015 "NAC domain containing protein 15" [Arabidopsis thaliana (taxid:3702)]

 Score = 613 (220.8 bits), Expect = 8.1e-60, P = 8.1e-60
 Identities = 113/172 (65%), Positives = 132/172 (76%)

Query:     1 MMAGNGELSVPPGFRFHPTDEELLYYYLRKKVSFEAIDLDVIREVDLNKLEPWDLKDKCR 60
             M + NG   VPPGFRFHPTDEELL+YYL+KK+S+E  +++VI+EVDLNK+EPWDL+D+C+
Sbjct:     1 MSSSNG--GVPPGFRFHPTDEELLHYYLKKKISYEKFEMEVIKEVDLNKIEPWDLQDRCK 58

Query:    61 IGSGPQNEWYFFSHKDKKYPXXXXXXXXXXXXFWKATGRDKAIHITMANVNSSRRIGMRK 120
             IGS PQNEWYFFSHKD+KYP            FWKATGRDK I       NS ++IGMRK
Sbjct:    59 IGSTPQNEWYFFSHKDRKYPTGSRTNRATHSGFWKATGRDKCIR------NSYKKIGMRK 112

Query:   121 TLVFYTGRAPHGQKTDWIMHEYRLDDDEYXXXXXEVVQEDGWVVCRVFKKKN 172
             TLVFY GRAPHGQKTDWIMHEYR++D E      +   EDGWVVCRVFKKKN
Sbjct:   113 TLVFYKGRAPHGQKTDWIMHEYRIEDTE------DDPCEDGWVVCRVFKKKN 158

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009834 "secondary cell wall biogenesis" evidence=IMP

GO:0010628 "positive regulation of gene expression" evidence=IEP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IMP

GO:0048829 "root cap development" evidence=IMP

TAIR|locus:2079562 NAC066 "NAC domain protein 66" [Arabidopsis thaliana (taxid:3702)]

 Score = 568 (205.0 bits), Expect = 2.6e-57, Sum P(2) = 2.6e-57
 Identities = 108/178 (60%), Positives = 126/178 (70%)

Query:     5 NGELSVPPGFRFHPTDEELLYYYLRKKVSFEAIDLDVIREVDLNKLEPWDLKDKCRIGSG 64
             NG+  VPPGFRFHPT+EELL YYLRKK+S   IDLDVI ++DLNKLEPWD+++ C+IG+ 
Sbjct:     6 NGQSQVPPGFRFHPTEEELLKYYLRKKISNIKIDLDVIPDIDLNKLEPWDIQEMCKIGTT 65

Query:    65 PQNEWYFFSHKDKKYPXXXXXXXXXXXXFWKATGRDKAIHITMANVNSSRRIGMRKTLVF 124
             PQN+WYF+SHKDKKYP            FWKATGRDK I+       +  RIGMRKTLVF
Sbjct:    66 PQNDWYFYSHKDKKYPTGTRTNRATTVGFWKATGRDKTIY------TNGDRIGMRKTLVF 119

Query:   125 YTGRAPHGQKTDWIMHEYRLD---------DDEYXXXXXEVVQED-GWVVCRVFKKKN 172
             Y GRAPHGQK+DWIMHEYRLD         D +      +V+  D GWVVCRVFKK N
Sbjct:   120 YKGRAPHGQKSDWIMHEYRLDESVLISSCGDHDVNVETCDVIGSDEGWVVCRVFKKNN 177

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009834 "secondary cell wall biogenesis" evidence=IMP

GO:0009901 "anther dehiscence" evidence=IGI

GO:0016020 "membrane" evidence=IDA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

TAIR|locus:2122219 NAC076 "NAC domain containing protein 76" [Arabidopsis thaliana (taxid:3702)]

 Score = 567 (204.7 bits), Expect = 6.1e-55, P = 6.1e-55
 Identities = 106/163 (65%), Positives = 123/163 (75%)

Query:     9 SVPPGFRFHPTDEELLYYYLRKKVSFEAIDLDVIREVDLNKLEPWDLKDKCRIGSGPQNE 68
             SVPPGFRFHPTDEEL+ YYLRKKV+ + IDLDVIR++DL ++EPWDL++ CRIG   +NE
Sbjct:     9 SVPPGFRFHPTDEELVGYYLRKKVASQKIDLDVIRDIDLYRIEPWDLQESCRIGYEERNE 68

Query:    69 WYFFSHKDKKYPXXXXXXXXXXXXFWKATGRDKAIHITMANVNSSRRIGMRKTLVFYTGR 128
             WYFFSHKDKKYP            FWKATGRDKA++      + S+ IGMRKTLVFY GR
Sbjct:    69 WYFFSHKDKKYPTGTRTNRATMAGFWKATGRDKAVY------DKSKLIGMRKTLVFYKGR 122

Query:   129 APHGQKTDWIMHEYRLDDDEYXXXXXEVVQEDGWVVCRVFKKK 171
             AP+GQKTDWIMHEYRL+ DE         QE+GWVVCR FKKK
Sbjct:   123 APNGQKTDWIMHEYRLESDENAPP-----QEEGWVVCRAFKKK 160

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009741 "response to brassinosteroid stimulus" evidence=RCA

GO:0010089 "xylem development" evidence=RCA

TAIR|locus:2060979 VND1 "vascular related NAC-domain protein 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 560 (202.2 bits), Expect = 3.4e-54, P = 3.4e-54
 Identities = 110/184 (59%), Positives = 132/184 (71%)

Query:     9 SVPPGFRFHPTDEELLYYYLRKKVSFEAIDLDVIREVDLNKLEPWDLKDKCRIGSGPQNE 68
             SVPPGFRFHPTDEEL+ YYLRKK++ + IDLDVIR++DL ++EPWDL+++CRIG   QNE
Sbjct:     8 SVPPGFRFHPTDEELVGYYLRKKIASQKIDLDVIRDIDLYRIEPWDLQEQCRIGYEEQNE 67

Query:    69 WYFFSHKDKKYPXXXXXXXXXXXXFWKATGRDKAIHITMANVNSSRRIGMRKTLVFYTGR 128
             WYFFSHKDKKYP            FWKATGRDKA++      + ++ IGMRKTLVFY GR
Sbjct:    68 WYFFSHKDKKYPTGTRTNRATMAGFWKATGRDKAVY------DKTKLIGMRKTLVFYKGR 121

Query:   129 APHGQKTDWIMHEYRLDDDEYXXXXXEVVQEDGWVVCRVFKK------KNHI--NRSYFQ 180
             AP+G+K+DWIMHEYRL+ DE         QE+GWVVCR FKK      KN    + SYF 
Sbjct:   122 APNGKKSDWIMHEYRLESDENAPP-----QEEGWVVCRAFKKRATGQAKNTETWSSSYFY 176

Query:   181 SEVA 184
              EVA
Sbjct:   177 DEVA 180

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0010200 "response to chitin" evidence=IEP

GO:0009741 "response to brassinosteroid stimulus" evidence=RCA

GO:0010089 "xylem development" evidence=RCA

TAIR|locus:2026232 ANAC026 "Arabidopsis NAC domain containing protein 26" [Arabidopsis thaliana (taxid:3702)]

 Score = 536 (193.7 bits), Expect = 6.1e-54, Sum P(2) = 6.1e-54
 Identities = 107/190 (56%), Positives = 130/190 (68%)

Query:     5 NGELSVPPGFRFHPTDEELLYYYLRKKVSFEAIDLDVIREVDLNKLEPWDLKDKCRIGSG 64
             N    VPPGFRFHPTDEEL+ YYLRKKV+ + I++D+I++VDL K+EP DL++ C+IG+ 
Sbjct:     2 NSFSQVPPGFRFHPTDEELVDYYLRKKVASKRIEIDIIKDVDLYKIEPCDLQELCKIGNE 61

Query:    65 PQNEWYFFSHKDKKYPXXXXXXXXXXXXFWKATGRDKAIHITMANVNSSRRIGMRKTLVF 124
              Q+EWYFFSHKDKKYP            FWKATGRDKAI+I  +       IGMRKTLVF
Sbjct:    62 EQSEWYFFSHKDKKYPTGTRTNRATKAGFWKATGRDKAIYIRHS------LIGMRKTLVF 115

Query:   125 YTGRAPHGQKTDWIMHEYRLDDDEYXXXXXEVVQEDGWVVCRVFKKK--NHINR--SYFQ 180
             Y GRAP+GQK+DWIMHEYRL+  E         QE+GWVVCRVFKKK    + +   Y  
Sbjct:   116 YKGRAPNGQKSDWIMHEYRLETSENGTP-----QEEGWVVCRVFKKKLAATVRKMGDYHS 170

Query:   181 SEVAHEYDQE 190
             S   H YD +
Sbjct:   171 SPSQHWYDDQ 180

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9MA17	SMB_ARATH	No assigned EC number	0.5303	0.9083	0.9083	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	371
pfam02365	130	pfam02365, NAM, No apical meristem (NAM) protein	1e-73

>gnl|CDD|216997 pfam02365, NAM, No apical meristem (NAM) protein

 Score =  224 bits (574), Expect = 1e-73
 Identities = 81/136 (59%), Positives = 99/136 (72%), Gaps = 8/136 (5%)

Query: 11  PPGFRFHPTDEELLYYYLRKKVSFEAIDL-DVIREVDLNKLEPWDLKDKCRIGSGPQNEW 69
           PPGFRFHPTDEEL+ YYL++KV  + + L DVI EVD+ K EPWDL D    G     EW
Sbjct: 2   PPGFRFHPTDEELVVYYLKRKVLGKPLPLLDVIPEVDIYKFEPWDLPDGKAKGGD--REW 59

Query: 70  YFFSHKDKKYPTGTRTNRATTAGFWKATGRDKAIHITMANVNSSRRIGMRKTLVFYTGRA 129
           YFFS +D+KYP G+RTNRAT +G+WKATG+DK +            +GM+KTLVFY GRA
Sbjct: 60  YFFSPRDRKYPNGSRTNRATGSGYWKATGKDKPVL-----SKGGEVVGMKKTLVFYKGRA 114

Query: 130 PHGQKTDWIMHEYRLD 145
           P G+KTDW+MHEYRL+
Sbjct: 115 PKGEKTDWVMHEYRLE 130

This is a family of no apical meristem (NAM) proteins these are plant development proteins. Mutations in NAM result in the failure to develop a shoot apical meristem in petunia embryos. NAM is indicated as having a role in determining positions of meristems and primordial. One member of this family NAP (NAC-like, activated by AP3/PI) is encoded by the target genes of the AP3/PI transcriptional activators and functions in the transition between growth by cell division and cell expansion in stamens and petals. Length = 130

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	371
PF02365	129	NAM: No apical meristem (NAM) protein; InterPro: I	100.0

>PF02365 NAM: No apical meristem (NAM) protein; InterPro: IPR003441 The NAC domain (for Petunia hybrida (Petunia) NAM and for Arabidopsis ATAF1, ATAF2, and CUC2) is an N-terminal module of ~160 amino acids, which is found in proteins of the NAC family of plant-specific transcriptional regulators (no apical meristem (NAM) proteins) []

Probab=100.00  E-value=7.6e-42  Score=294.40  Aligned_cols=128  Identities=53%  Similarity=1.064  Sum_probs=96.2

Q ss_pred             CCCCceeCCChHHHHHHHHHHhhcCCCCCc-CeeeeccCCCCCCCCcccccccCCCCCceeEEEeccCCCCCCCCccccc
Q 046523           10 VPPGFRFHPTDEELLYYYLRKKVSFEAIDL-DVIREVDLNKLEPWDLKDKCRIGSGPQNEWYFFSHKDKKYPTGTRTNRA   88 (371)
Q Consensus        10 LPpGfRF~PTDeELV~~YL~~Kv~g~pl~~-~~I~evDVy~~ePwdL~~~~~~g~g~~~eWYFFs~r~kK~~~G~R~nR~   88 (371)
                      |||||||+|||+|||.+||++|+.+.+++. ++|+++|||..|||+|+...   .+.+++||||+++++++.++.|.+|+
T Consensus         1 LP~G~rF~PtD~ELi~~yL~~k~~g~~~~~~~~i~~~Diy~~~P~~L~~~~---~~~~~~~yFF~~~~~~~~~~~r~~R~   77 (129)
T PF02365_consen    1 LPPGFRFRPTDEELINHYLRPKILGEPLPCEDVIHDVDIYSAHPWELPAKF---KGGDEEWYFFSPRKKKYPNGGRPNRV   77 (129)
T ss_dssp             --TTEEE---HHHHHHCTHHHHHTT-HHCS-CHSEE--GGGS-GGGCHHHS---SS-SSEEEEEEE----------S-EE
T ss_pred             CCCceEecCChHHHHHHHHHHHhcCCCCCcccceeecccCccChHHhhhhc---cCCCceEEEEEecccccCCccccccc
Confidence            899999999999999999999999999887 69999999999999999532   22457999999999999999999999


Q ss_pred             ccCCeEeeccCCccEEeccccCCCCeeeEEEEEEEeecCCCCCCCCcCeEEEEEEeC
Q 046523           89 TTAGFWKATGRDKAIHITMANVNSSRRIGMRKTLVFYTGRAPHGQKTDWIMHEYRLD  145 (371)
Q Consensus        89 tggG~WK~tG~~K~I~~~~~~~~~g~~IG~KktL~Fy~gr~p~g~kT~WiMhEY~L~  145 (371)
                      +++|+||.+|+.+.|...     ++.+||+|++|+||.++.+++.+|+|+||||+|.
T Consensus        78 ~~~G~Wk~~g~~~~i~~~-----~g~~iG~k~~l~f~~~~~~~~~kt~W~M~EY~L~  129 (129)
T PF02365_consen   78 TGGGYWKSTGKEKPIKDP-----GGKVIGFKKTLVFYSGKSPNGKKTGWVMHEYSLE  129 (129)
T ss_dssp             ETTEEEEEECEEEEEEE------TTCEEEEEEEEEEEESSTTS-EEEEEEEEEEEE-
T ss_pred             ccceEEeecccccccccc-----cceeeeeEEEEEEEeccCCCCCcCCeEEEEEEeC
Confidence            999999999999999985     5899999999999998888889999999999984

NAC proteins are involved in developmental processes, including formation of the shoot apical meristem, floral organs and lateral shoots, as well as in plant hormonal control and defence. The NAC domain is accompanied by diverse C-terminal transcriptional activation domains. The NAC domain has been shown to be a DNA-binding domain (DBD) and a dimerization domain [,]. The NAC domain can be subdivided into five subdomains (A-E). Each subdomain is distinguishable by blocks of heterogeneous amino acids or gaps. While the NAC domains were rich in basic amino acids (R, K and H) as a whole, the distribution of positive and negative amino acids in each subdomain were unequal. Subdomains C and D are rich in basic amino acids but poor in acidic amino acids, while subdomain B contains a high proportion of acidic amino acids. Putative nuclear localization signals (NLS) have been detected in subdomains C and D []. The DBD is contained within a 60 amino acid region located within subdomains D and E []. The overall structure of the NAC domain monomer consists of a very twisted antiparallel beta-sheet, which packs against an N-terminal alpha-helix on one side and one shorter helix on the other side surrounded by a few helical elements. The structure suggests that the NAC domain mediates dimerization through conserved interactions including a salt bridge, and DNA binding through the NAC dimer face rich in positive charges [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1UT4_A 3SWM_B 4DUL_B 3SWP_D 1UT7_B 3ULX_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	371
3ulx_A	174	Crystal Structural Of The Conserved Domain Of Rice		7e-37
1ut4_A	171	Structure Of The Conserved Domain Of Anac, A Member		8e-37
3swm_A	174	The Nac Domain Of Anac019 In Complex With Dna, Gold		8e-37

>pdb|3ULX|A Chain A, Crystal Structural Of The Conserved Domain Of Rice Stress-Responsive Nac1 Length = 174

Iteration: 1
 Score =  151 bits (381), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 75/170 (44%), Positives = 105/170 (61%), Gaps = 11/170 (6%)
Query: 6   GELSVPPGFRFHPTDEELLYYYLRKKVSFEAIDLDVIREVDLNKLEPWDLKDKCRIGSGP 65
            EL++PPGFRFHPTD+EL+ +YL +K + + + + +I EVDL K +PWDL ++   G+  
Sbjct: 11  AELNLPPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYKFDPWDLPERALFGA-- 68
Query: 66  QNEWYFFSHKDKKYPXXXXXXXXXXXXFWKATGRDKAIHITMANVNSSRRIGMRKTLVFY 125
             EWYFF+ +D+KYP            +WKATG DK +          R +G++K LVFY
Sbjct: 69  -REWYFFTPRDRKYPNGSRPNRAAGNGYWKATGADKPV------APRGRTLGIKKALVFY 121
Query: 126 TGRAPHGQKTDWIMHEYRLDDDEYXXXXXEV--VQEDGWVVCRVFKKKNH 173
            G+AP G KTDWIMHEYRL D        +   ++ D WV+CR++ KKN 
Sbjct: 122 AGKAPRGVKTDWIMHEYRLADAGRAAAGAKKGSLRLDDWVLCRLYNKKNE 171

>pdb|1UT4|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The Nac Family Of Transcription Factors Length = 171

Iteration: 1
 Score =  150 bits (380), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 74/170 (43%), Positives = 103/170 (60%), Gaps = 12/170 (7%)
Query: 7   ELSVPPGFRFHPTDEELLYYYLRKKVSFEAIDLDVIREVDLNKLEPWDLKDKCRIGSGPQ 66
           +LS+PPGFRF+PTDEEL+  YL +K +     L +I E+DL K +PW L +K   G   +
Sbjct: 14  QLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFG---E 70
Query: 67  NEWYFFSHKDKKYPXXXXXXXXXXXXFWKATGRDKAIHITMANVNSSRRIGMRKTLVFYT 126
            EWYFFS +D+KYP            +WKATG DK I          +R+G++K LVFY 
Sbjct: 71  KEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIIS------TEGQRVGIKKALVFYI 124
Query: 127 GRAPHGQKTDWIMHEYRLDDDEYXXXXXEVVQEDGWVVCRVFKKKNHINR 176
           G+AP G KT+WIMHEYRL +        ++   D WV+CR++KK++   +
Sbjct: 125 GKAPKGTKTNWIMHEYRLIEPSRRNGSTKL---DDWVLCRIYKKQSSAQK 171

>pdb|3SWM|A Chain A, The Nac Domain Of Anac019 In Complex With Dna, Gold Derivative Length = 174

Iteration: 1
 Score =  150 bits (380), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 74/170 (43%), Positives = 103/170 (60%), Gaps = 12/170 (7%)
Query: 7   ELSVPPGFRFHPTDEELLYYYLRKKVSFEAIDLDVIREVDLNKLEPWDLKDKCRIGSGPQ 66
           +LS+PPGFRF+PTDEEL+  YL +K +     L +I E+DL K +PW L +K   G   +
Sbjct: 17  QLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFG---E 73
Query: 67  NEWYFFSHKDKKYPXXXXXXXXXXXXFWKATGRDKAIHITMANVNSSRRIGMRKTLVFYT 126
            EWYFFS +D+KYP            +WKATG DK I          +R+G++K LVFY 
Sbjct: 74  KEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIIS------TEGQRVGIKKALVFYI 127
Query: 127 GRAPHGQKTDWIMHEYRLDDDEYXXXXXEVVQEDGWVVCRVFKKKNHINR 176
           G+AP G KT+WIMHEYRL +        ++   D WV+CR++KK++   +
Sbjct: 128 GKAPKGTKTNWIMHEYRLIEPSRRNGSTKL---DDWVLCRIYKKQSSAQK 174
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	371
3ulx_A	174	Stress-induced transcription factor NAC1; NAC fami	1e-100
1ut7_A	171	No apical meristem protein; transcription regulati	1e-100

>3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} Length = 174

 Score =  294 bits (755), Expect = e-100
 Identities = 81/177 (45%), Positives = 117/177 (66%), Gaps = 11/177 (6%)

Query: 2   MAGNGELSVPPGFRFHPTDEELLYYYLRKKVSFEAIDLDVIREVDLNKLEPWDLKDKCRI 61
                EL++PPGFRFHPTD+EL+ +YL +K + + + + +I EVDL K +PWDL ++   
Sbjct: 7   RDAEAELNLPPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYKFDPWDLPERALF 66

Query: 62  GSGPQNEWYFFSHKDKKYPTGTRTNRATTAGFWKATGRDKAIHITMANVNSSRRIGMRKT 121
           G+    EWYFF+ +D+KYP G+R NRA   G+WKATG DK +          R +G++K 
Sbjct: 67  GA---REWYFFTPRDRKYPNGSRPNRAAGNGYWKATGADKPVA------PRGRTLGIKKA 117

Query: 122 LVFYTGRAPHGQKTDWIMHEYRLDDDEYSSSSSE--VVQEDGWVVCRVFKKKNHINR 176
           LVFY G+AP G KTDWIMHEYRL D   +++ ++   ++ D WV+CR++ KKN   +
Sbjct: 118 LVFYAGKAPRGVKTDWIMHEYRLADAGRAAAGAKKGSLRLDDWVLCRLYNKKNEWEK 174

>1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A Length = 171

 Score =  293 bits (752), Expect = e-100
 Identities = 80/175 (45%), Positives = 111/175 (63%), Gaps = 12/175 (6%)

Query: 2   MAGNGELSVPPGFRFHPTDEELLYYYLRKKVSFEAIDLDVIREVDLNKLEPWDLKDKCRI 61
                +LS+PPGFRF+PTDEEL+  YL +K +     L +I E+DL K +PW L +K   
Sbjct: 9   TDPLTQLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALF 68

Query: 62  GSGPQNEWYFFSHKDKKYPTGTRTNRATTAGFWKATGRDKAIHITMANVNSSRRIGMRKT 121
           G     EWYFFS +D+KYP G+R NR   +G+WKATG DK I          +R+G++K 
Sbjct: 69  GE---KEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIIS------TEGQRVGIKKA 119

Query: 122 LVFYTGRAPHGQKTDWIMHEYRLDDDEYSSSSSEVVQEDGWVVCRVFKKKNHINR 176
           LVFY G+AP G KT+WIMHEYRL +    + S+   + D WV+CR++KK++   +
Sbjct: 120 LVFYIGKAPKGTKTNWIMHEYRLIEPSRRNGST---KLDDWVLCRIYKKQSSAQK 171

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	371
3ulx_A	174	Stress-induced transcription factor NAC1; NAC fami	100.0
1ut7_A	171	No apical meristem protein; transcription regulati	100.0

>3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} SCOP: b.143.1.1

Probab=100.00  E-value=2e-54  Score=391.13  Aligned_cols=161  Identities=50%  Similarity=1.033  Sum_probs=135.6

Q ss_pred             CCCCCCCCCCceeCCChHHHHHHHHHHhhcCCCCCcCeeeeccCCCCCCCCcccccccCCCCCceeEEEeccCCCCCCCC
Q 046523            4 GNGELSVPPGFRFHPTDEELLYYYLRKKVSFEAIDLDVIREVDLNKLEPWDLKDKCRIGSGPQNEWYFFSHKDKKYPTGT   83 (371)
Q Consensus         4 ~~~~~~LPpGfRF~PTDeELV~~YL~~Kv~g~pl~~~~I~evDVy~~ePwdL~~~~~~g~g~~~eWYFFs~r~kK~~~G~   83 (371)
                      ...++.|||||||+|||||||.|||++|+.+.+++.++|+++|||++|||+|++.+..+   +++|||||++++||++|.
T Consensus         9 ~~~~~~LPpGfRF~PTDeELV~~YL~~K~~g~~~~~~~I~evDvy~~~Pw~Lp~~~~~g---~~ewYFFs~r~~ky~~g~   85 (174)
T 3ulx_A            9 AEAELNLPPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYKFDPWDLPERALFG---AREWYFFTPRDRKYPNGS   85 (174)
T ss_dssp             CCSTTTCCTTCCCCCCHHHHHHHTHHHHHHTCCCSSSCCEECCGGGSCGGGSGGGCSSC---SSEEEEEEECCC-----C
T ss_pred             cccccCCCCcceeCCCHHHHHHHHHHHHhcCCCCCcCeeeecccccCCchhhhhhhccC---CceEEEEeccccccCCCC
Confidence            35678999999999999999999999999999999999999999999999999986533   579999999999999999


Q ss_pred             cccccccCCeEeeccCCccEEeccccCCCCeeeEEEEEEEeecCCCCCCCCcCeEEEEEEeCCCCCCCCC--cccccCCc
Q 046523           84 RTNRATTAGFWKATGRDKAIHITMANVNSSRRIGMRKTLVFYTGRAPHGQKTDWIMHEYRLDDDEYSSSS--SEVVQEDG  161 (371)
Q Consensus        84 R~nR~tggG~WK~tG~~K~I~~~~~~~~~g~~IG~KktL~Fy~gr~p~g~kT~WiMhEY~L~~~~~~~~~--~~~~~~~~  161 (371)
                      |+||+|++||||++|+++.|...      +.+||+||+|+||.|+++++.||+|+||||+|.........  ......++
T Consensus        86 R~nR~t~~G~WkatG~dk~I~~~------g~~vG~KktLvFy~g~~p~g~kT~WvMhEY~L~~~~~~~~~~~~~~~~~~~  159 (174)
T 3ulx_A           86 RPNRAAGNGYWKATGADKPVAPR------GRTLGIKKALVFYAGKAPRGVKTDWIMHEYRLADAGRAAAGAKKGSLRLDD  159 (174)
T ss_dssp             CSCEEETTEEEEECSCCEEECCS------SSCCEEEEEEEEEESSTTSCEEEEEEEEEEEECSCC-----------CCSS
T ss_pred             CceeecCCceEccCCCCcEEeeC------CcEEEEEEEEEEecCCCCCCCcCCeEEEEEEeCCCCCcccccccCCCCCCC
Confidence            99999999999999999999764      68999999999999999999999999999999987543211  11235689


Q ss_pred             EEEEEEEEeCCC
Q 046523          162 WVVCRVFKKKNH  173 (371)
Q Consensus       162 ~VLCRIykK~~~  173 (371)
                      |||||||+|++.
T Consensus       160 wVlCrvf~K~~~  171 (174)
T 3ulx_A          160 WVLCRLYNKKNE  171 (174)
T ss_dssp             EEEEEEEESCC-
T ss_pred             EEEEEEEEcCCC
Confidence            999999999864

>1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A

Probab=100.00  E-value=1.4e-53  Score=384.87  Aligned_cols=157  Identities=50%  Similarity=0.984  Sum_probs=131.1

Q ss_pred             CCCCCCCCCceeCCChHHHHHHHHHHhhcCCCCCcCeeeeccCCCCCCCCcccccccCCCCCceeEEEeccCCCCCCCCc
Q 046523            5 NGELSVPPGFRFHPTDEELLYYYLRKKVSFEAIDLDVIREVDLNKLEPWDLKDKCRIGSGPQNEWYFFSHKDKKYPTGTR   84 (371)
Q Consensus         5 ~~~~~LPpGfRF~PTDeELV~~YL~~Kv~g~pl~~~~I~evDVy~~ePwdL~~~~~~g~g~~~eWYFFs~r~kK~~~G~R   84 (371)
                      ..++.|||||||+|||||||.|||++|+.+.+++.++|+++|||.+|||+|++....   .+++|||||++++||++|.|
T Consensus        12 ~~~~~lPpGfRF~PTDeELv~~YL~~K~~g~~~~~~~I~e~Diy~~~Pw~Lp~~~~~---g~~ewyFFs~r~~k~~~g~R   88 (171)
T 1ut7_A           12 LTQLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALF---GEKEWYFFSPRDRKYPNGSR   88 (171)
T ss_dssp             CCSSCCCTTEEECCCHHHHHHHTHHHHHTTCCCSSCCSEECCGGGSCGGGHHHHSSS---CSSEEEEEEECCC-------
T ss_pred             ccccCCCCcceeCCChHHHHHHHHHHHhcCCCCCCCeEeecccccCChhHhhchhhc---CCccEEEEeccccccCCCCc
Confidence            456799999999999999999999999999999999999999999999999998643   26899999999999999999


Q ss_pred             ccccccCCeEeeccCCccEEeccccCCCCeeeEEEEEEEeecCCCCCCCCcCeEEEEEEeCCCCCCCCCcccccCCcEEE
Q 046523           85 TNRATTAGFWKATGRDKAIHITMANVNSSRRIGMRKTLVFYTGRAPHGQKTDWIMHEYRLDDDEYSSSSSEVVQEDGWVV  164 (371)
Q Consensus        85 ~nR~tggG~WK~tG~~K~I~~~~~~~~~g~~IG~KktL~Fy~gr~p~g~kT~WiMhEY~L~~~~~~~~~~~~~~~~~~VL  164 (371)
                      +||+|++||||++|+++.|...      +.+||+||+|+||+|+++++.||+|+||||+|......   ......++|||
T Consensus        89 ~~R~t~~G~Wk~tG~~k~I~~~------~~~vG~KktLvFy~g~~p~g~kT~WvMhEY~l~~~~~~---~~~~~~~~~Vl  159 (171)
T 1ut7_A           89 PNRVAGSGYWKATGTDKIISTE------GQRVGIKKALVFYIGKAPKGTKTNWIMHEYRLIEPSRR---NGSTKLDDWVL  159 (171)
T ss_dssp             CCEEETTEEEEEEEEEEEEEET------TEEEEEEEEEEEEESSTTSCEEEEEEEEEEEECCCC-----------CCEEE
T ss_pred             ccccCCCCEEeccCCCceEEec------CcEEEEEEEEEEEcCcCCCCCcCCeEEEEEEcCCCccc---cCcccCCCEEE
Confidence            9999999999999999999875      69999999999999999999999999999999987521   11235689999


Q ss_pred             EEEEEeCCC
Q 046523          165 CRVFKKKNH  173 (371)
Q Consensus       165 CRIykK~~~  173 (371)
                      ||||+|+..
T Consensus       160 Crv~~k~~~  168 (171)
T 1ut7_A          160 CRIYKKQSS  168 (171)
T ss_dssp             EEEEECC--
T ss_pred             EEEEEcCCC
Confidence            999999865

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	371
d1ut7a_	166	b.143.1.1 (A:) No apical meristem (NAM, ANAC) {Mou	5e-67

>d1ut7a_ b.143.1.1 (A:) No apical meristem (NAM, ANAC) {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 166

class: All beta proteins
fold: NAC domain
superfamily: NAC domain
family: NAC domain
domain: No apical meristem (NAM, ANAC)
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  207 bits (527), Expect = 5e-67
 Identities = 80/165 (48%), Positives = 110/165 (66%), Gaps = 12/165 (7%)

Query: 7   ELSVPPGFRFHPTDEELLYYYLRKKVSFEAIDLDVIREVDLNKLEPWDLKDKCRIGSGPQ 66
           +LS+PPGFRF+PTDEEL+  YL +K +     L +I E+DL K +PW L +K   G   +
Sbjct: 14  QLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFG---E 70

Query: 67  NEWYFFSHKDKKYPTGTRTNRATTAGFWKATGRDKAIHITMANVNSSRRIGMRKTLVFYT 126
            EWYFFS +D+KYP G+R NR   +G+WKATG DK I          +R+G++K LVFY 
Sbjct: 71  KEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIIS------TEGQRVGIKKALVFYI 124

Query: 127 GRAPHGQKTDWIMHEYRLDDDEYSSSSSEVVQEDGWVVCRVFKKK 171
           G+AP G KT+WIMHEYRL +    + S+   + D WV+CR++KK+
Sbjct: 125 GKAPKGTKTNWIMHEYRLIEPSRRNGST---KLDDWVLCRIYKKQ 166

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	371
d1ut7a_	166	No apical meristem (NAM, ANAC) {Mouse-ear cress (A	100.0

>d1ut7a_ b.143.1.1 (A:) No apical meristem (NAM, ANAC) {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All beta proteins
fold: NAC domain
superfamily: NAC domain
family: NAC domain
domain: No apical meristem (NAM, ANAC)
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=1.8e-51  Score=366.72  Aligned_cols=156  Identities=50%  Similarity=0.985  Sum_probs=129.6

Q ss_pred             CCCCCCCCCCceeCCChHHHHHHHHHHhhcCCCCCcCeeeeccCCCCCCCCcccccccCCCCCceeEEEeccCCCCCCCC
Q 046523            4 GNGELSVPPGFRFHPTDEELLYYYLRKKVSFEAIDLDVIREVDLNKLEPWDLKDKCRIGSGPQNEWYFFSHKDKKYPTGT   83 (371)
Q Consensus         4 ~~~~~~LPpGfRF~PTDeELV~~YL~~Kv~g~pl~~~~I~evDVy~~ePwdL~~~~~~g~g~~~eWYFFs~r~kK~~~G~   83 (371)
                      ...+++|||||||+|||||||.|||++|+.+.+++.++|+++|||++|||+|++....   .+++||||+++++++++|.
T Consensus        11 ~~~~l~LPpG~RF~PTDeELv~~YL~~Ki~g~~l~~~~I~~~Dvy~~~Pw~Lp~~~~~---~~~~wyFft~~~~k~~~g~   87 (166)
T d1ut7a_          11 PLTQLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALF---GEKEWYFFSPRDRKYPNGS   87 (166)
T ss_dssp             -CCSSCCCTTEEECCCHHHHHHHTHHHHHTTCCCSSCCSEECCGGGSCGGGHHHHSSS---CSSEEEEEEECCC------
T ss_pred             ccccccCCCccccCCCcHHHHHHHHHHHHcCCCCCcccceeccCCcCChhhccchhcc---CcceEEEEeeeccccCCCC
Confidence            4578899999999999999999999999999999999999999999999999986532   3678999999999999999


Q ss_pred             cccccccCCeEeeccCCccEEeccccCCCCeeeEEEEEEEeecCCCCCCCCcCeEEEEEEeCCCCCCCCCcccccCCcEE
Q 046523           84 RTNRATTAGFWKATGRDKAIHITMANVNSSRRIGMRKTLVFYTGRAPHGQKTDWIMHEYRLDDDEYSSSSSEVVQEDGWV  163 (371)
Q Consensus        84 R~nR~tggG~WK~tG~~K~I~~~~~~~~~g~~IG~KktL~Fy~gr~p~g~kT~WiMhEY~L~~~~~~~~~~~~~~~~~~V  163 (371)
                      |.+|+|++|+||++|+++.|...      |.+||+||+|+||+++.+++.+|+|+||||+|.+.....   .....++||
T Consensus        88 r~~R~~g~G~Wk~~g~~~~i~~~------g~~vG~kk~l~fy~~~~~~~~~t~W~M~EY~l~~~~~~~---~~~~~~~~V  158 (166)
T d1ut7a_          88 RPNRVAGSGYWKATGTDKIISTE------GQRVGIKKALVFYIGKAPKGTKTNWIMHEYRLIEPSRRN---GSTKLDDWV  158 (166)
T ss_dssp             -CCEEETTEEEEEEEEEEEEEET------TEEEEEEEEEEEEESSTTSCEEEEEEEEEEEECCCC-----------CCEE
T ss_pred             ccccccCCCEecccCCCceEecC------CcEEEEEEEEEEEecCCCCCCccCeEEEEEecCCccccc---CccccCCEE
Confidence            99999999999999999988754      789999999999999999999999999999998765421   123457899


Q ss_pred             EEEEEEeC
Q 046523          164 VCRVFKKK  171 (371)
Q Consensus       164 LCRIykK~  171 (371)
                      |||||+|+
T Consensus       159 LCrI~~Kk  166 (166)
T d1ut7a_         159 LCRIYKKQ  166 (166)
T ss_dssp             EEEEEECC
T ss_pred             EEEEEecC
Confidence            99999985