Citrus Sinensis ID: 046527

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380
Protein Sequence
HIAHLNIHDELLPFKDVIAKVIYDKNYPRIKTVVNKVGTIANEFRVPEFEILAGEDNMVTEVKQYGATFKLDYSLVYWNSRLEHEHLRIISQFRPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFIRQLMTAPAGEINSESDVFNLKACGNSGIQANKKTGIENVGLDVQDKEVAGNITSNSEGLQNYCRNADASVTATKRPSDGCLEENGTTNSASGRKGKTSKRMKGSELPNTKTWEHVDHIIMNLPASALKFLDAFRGLIQRQYWKGSLPWIHCYCFIRANETEELIISEAESALNACIQDPIFHKVRNVAPNKAMFCLSFRLPEACFSAKITRSVQSAGEAMSST
Secondary Structure (PSIPRED)
cEEEEEcccccccHHHHHHHHHHHcccccEEEEEEcccccccEEEcccEEEEEccccEEEEEEEccEEEEEEcccEEccccHHHHHHHHHHHcccccEEEEEccccccHHHHHHccccEEEEEEccHHHHHHHHHHHHHccccccEEEEEccHHHHHHHHHcccccccccccEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEccccHHHHHHHHHHHHHHHHcccccccEEEEEEEEcccccHHHHHHHHHHHHcccccccEEEEEEcccccccEEEEEEEccHHHHcccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cEEEEcccHHHHHHHHHHHHHHHHccccccEEEEEEccccccccccccEEEEEccccEEEEEEEccEEEEEEEcEEEEccccHHHHHHHHHHcccccEEEEEEccccccHHHHcccccEEEEccccHHHHHHHHHHHHHccccccEEEccccHHHHHHHHHHccHHcccccccccccHHHHHHHHHHHccccEEEEEcccccccccccHHHHHHHHHHHccccccEEEEEccccccccccEEEEEccccccccccccccccccccccccccEEEEEEcccHHHHHHHHHHHHHHccccccccccEEEEEEEcccccHHHHHHHHHHHHHcccccccEEEEEEEccccccEEEEEEEccHHHHHcccccccccccHHHccc
Coil and Loop (DISEMBL)
hiahlnihdellpfKDVIAKViydknypriKTVVNKVgtianefrvpefeilagedNMVTEVKQYGATFKLDYSLVYWNSRLEHEHLRIIsqfrpgeticdmfagigpfaipaaqkgcivfandlnpdsvHYLKINAKVNKVDNYVRAYNMDAREFIRQLMtapageinsesdvfnlkacgnsgiqankktgienvgldvqdkevagnitsnseglqNYCRNADAsvtatkrpsdgcleengttnsasgrkgktskrmkgselpntktweHVDHIIMNLPASALKFLDAFRGLIQRQywkgslpwihcyCFIRANETEELIISEAESALNAciqdpifhkvrnvapnkamfclsfrlpeacfsaKITRSVQSageamsst
Flexible Loop (DISEMBL)
hiahlnihdellpfkDVIAKVIydknypriktVVNKVGTIANEFRVPEFEILAGEDNMVTEVKQYGATFKLDYSLVYWNSRLEHEHLRIISQFRPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKInakvnkvdnYVRAYNMDAREFIRQLMTAPAGEINSESDVFNLKACGNSGIQANKKTGIENVGLDVQDKEVAGNItsnseglqnyCRNADASVTAtkrpsdgcleengttnsasgrkgktskrmkgselpntktwehVDHIIMNLPASALKFLDAFRGLIQRQYWKGSLPWIHCYCFIRANETEELIISEAESALNACIQDPIFHKVRNVAPNKAMFCLSFRLPEACFSAKITRSvqsageamsst
Low Complexity Region (SEG)
HIAHLNIHDELLPFKDVIAKVIYDKNYPRIKTVVNKVGTIANEFRVPEFEILAGEDNMVTEVKQYGATFKLDYSLVYWNSRLEHEHLRIISQFRPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFIRQLMTAPAGEINSESDVFNLKACGNSGIQANKKTGIENVGLDVQDKEVAGNITSNSEGLQNYCRNADASVTATKRPSDGCLEENGTTNSASGRKGKTSKRMKGSELPNTKTWEHVDHIIMNLPASALKFLDAFRGLIQRQYWKGSLPWIHCYCFIRANETEELIISEAESALNACIQDPIFHKVRNVAPNKAMFCLSFRLPEACFSAKITRSVQSAGEAMSST
Disordered region (IsUnstruct)
***HLNIHDELLPFKDVIAKVIYDKNYPRIKTVVNKVGTIANEFRVPEFEILAGEDNMVTEVKQYGATFKLDYSLVYWNSRLEHEHLRIISQFRPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFIRQLMTAPAGEINSESDVFNLKACGNSGIQANKKTGIENVGLDV*******************************************************************TWEHVDHIIMNLPASALKFLDAFRGLIQRQYWKGSLPWIHCYCFIRANETEELIISEAESALNACIQDPIFHKVRNVAPNKAMFCLSFRLPEACFSAKI**************
Disordered Region (DISOPRED)
HIAHLNIHDELLPFKDVIAKVIYDKNYPRIKTVVNKVGTIANEFRVPEFEILAGEDNMVTEVKQYGATFKLDYSLVYWNSRLEHEHLRIISQFRPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFIRQLMTAPAGEINSESDVFNLKACGNSGIQANKKTGIENVGLDVQDKEVAGNITSNSEGLQNYCRNADASVTATKRPSDGCLEENGTTNSASGRKGKTSKRMKGSELPNTKTWEHVDHIIMNLPASALKFLDAFRGLIQRQYWKGSLPWIHCYCFIRANETEELIISEAESALNACIQDPIFHKVRNVAPNKAMFCLSFRLPEAC*******************
Disordered Region (DISEMBL)
HIAHLNIHDELLPFKDVIAKVIYDKNYPRIKTVVNKVGTIANEFRVPEFEILAGEDNMVTEVKQYGATFKLDYSLVYWNSRLEHEHLRIISQFRPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFIRQLMTAPAGEINSESDVFNLKACGNSGIQANKKTGIENVGLDVQDKEVAGNITSNSEGLQNYCRNADASVTATKRPSDGCLE***********************LPNTKTWEHVDHIIMNLPASALKFLDAFRGLIQRQYWKGSLPWIHCYCFIRANETEELIISEAESALNACIQDPIFHKVRNVAPNKAMFCLSFRLPEACFSAKIT*************
Disordered Region (DISPRO)
HIAHLNIHDELLPFKDVIAKVIYDKNYPRIKTVVNKVGTIANEFRVPEFEILAGEDNMVTEVKQYGATFKLDYSLVYWNSRLEHEHLRIISQFRPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFIRQLMTAPAGEINSESDVFNLKACGNSGIQANKKTGIENVGLDVQDKEVAGNITSNSEGLQNYCRNADASVTATKRPSDGCLEENGTTNSASGRKGKT****KGSELPNTKTWEHVDHIIMNLPASALKFLDAFRGLIQRQYWKGSLPWIHCYCFIRANETEELIISEAESALNACIQDPIFHKVRNVAPNKAMFCLSFRLPEACFSAK***************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
HIAHLNIHDELLPFKDVIAKVIYDKNYPRIKTVVNKVGTIANEFRVPEFEILAGEDNMVTEVKQYGATFKLDYSLVYWNSRLEHEHLRIISQFRPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFIRQLMTAPAGEINSESDVFNLKACGNSGIQANKKTGIENVGLDVQDKEVAGNITSNSEGLQNYCRNADASVTATKRPSDGCLEENGTTNSASGRKGKTSKRMKGSELPNTKTWEHVDHIIMNLPASALKFLDAFRGLIQRQYWKGSLPWIHCYCFIRANETEELIISEAESALNACIQDPIFHKVRNVAPNKAMFCLSFRLPEACFSAKITRSVQSAGEAMSST
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	380	2.2.26 [Sep-21-2011]
F6HH45	510	tRNA (guanine(37)-N1)-met	yes	no	0.986	0.735	0.691	1e-154
Q93YU6	468	tRNA (guanine(37)-N1)-met	yes	no	0.892	0.724	0.622	1e-131
C5XX79	465	tRNA (guanine(37)-N1)-met	N/A	no	0.910	0.744	0.610	1e-126
A9T6G5	480	tRNA (guanine(37)-N1)-met	N/A	no	0.860	0.681	0.479	3e-94
D0NLC2	411	tRNA (guanine(37)-N1)-met	N/A	no	0.423	0.391	0.549	6e-48
C8VJ35	478	tRNA (guanine(37)-N1)-met	yes	no	0.768	0.610	0.318	5e-47
A2E5K9	378	tRNA (guanine(37)-N1)-met	N/A	no	0.415	0.417	0.566	2e-45
B8A5G9	480	tRNA (guanine(37)-N1)-met	yes	no	0.413	0.327	0.525	4e-45
Q4PHW2	628	tRNA (guanine(37)-N1)-met	N/A	no	0.907	0.549	0.319	7e-45
Q8TFG7	450	tRNA (guanine(37)-N1)-met	yes	no	0.413	0.348	0.544	1e-44

>sp|F6HH45|TRM52_VITVI tRNA (guanine(37)-N1)-methyltransferase 2 OS=Vitis vinifera GN=VIT_11s0016g04350 PE=3 SV=1

 Score =  544 bits (1402), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 265/383 (69%), Positives = 311/383 (81%), Gaps = 8/383 (2%)

Query: 1   HIAHLNIHDELLPFKDVIAKVIYDKNYPRIKTVVNKVGTIANEFRVPEFEILAGEDNMVT 60
           HIAHLNI  ELLP+KDVIAKVIYDKNYPRIKTVVNKVGTI NEFRVP+FEIL G+D+MVT
Sbjct: 127 HIAHLNITGELLPYKDVIAKVIYDKNYPRIKTVVNKVGTITNEFRVPKFEILVGKDDMVT 186

Query: 61  EVKQYGATFKLDYSLVYWNSRLEHEHLRIISQFRPGETICDMFAGIGPFAIPAAQKGCIV 120
           EVKQY ATFKLDYSLVYWNSRLEHEH+R++SQFRPG+ ICDMF+G+GPFAIPAAQKGC+V
Sbjct: 187 EVKQYRATFKLDYSLVYWNSRLEHEHMRLVSQFRPGQIICDMFSGVGPFAIPAAQKGCLV 246

Query: 121 FANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFIRQLMTAPAGEINSESDVFNLKAC 180
           +ANDLNPDS+ YLKINAK+NKVD+ + AYNMDAR+FI QLM  P  EI  E DV  LKA 
Sbjct: 247 YANDLNPDSIRYLKINAKINKVDDNIWAYNMDARKFISQLMEVPVHEILPEPDVPVLKAT 306

Query: 181 GNSGIQANKKTGIENVGLDVQDKEVAGNITSNSEGLQNYCRNADASVTATKRPSDGCLEE 240
               IQAN +T  +N GL V+   V  + +SN +G++  C  AD +V A K+ S  C EE
Sbjct: 307 EECSIQANVQTESQNGGLTVEAIGVHSDDSSNMDGIEGSCTVADDTVAAVKKHSGSCEEE 366

Query: 241 NGTTNSAS-----GRKGKTSKRMKGSE-LPNTKTWEHVDHIIMNLPASALKFLDAFRGLI 294
           NGT ++A+      RK + +KRM+GSE   N K WEHVDH+IMNLPASA++FLDAFRGLI
Sbjct: 367 NGTYDNATVSVVGRRKDRMNKRMRGSESSSNIKPWEHVDHVIMNLPASAIQFLDAFRGLI 426

Query: 295 QRQYWKGSLPWIHCYCFIRANETEELIISEAESALNACIQDPIFHKVRNVAPNKAMFCLS 354
           QR+YWKGSLPWIHCYCFIRANET E+IISEAE+ALNA IQ+PI H+VR+VAPNKAMFCLS
Sbjct: 427 QRKYWKGSLPWIHCYCFIRANETNEMIISEAETALNASIQEPILHRVRDVAPNKAMFCLS 486

Query: 355 FRLP-EACFSAKITRS-VQSAGE 375
           FRL  EACF    T+S + S+G+
Sbjct: 487 FRLSEEACFKEDATKSLLDSSGD 509

Specifically methylates the N1 position of guanosine-37 in various cytoplasmic and mitochondrial tRNAs. Methylation is not dependent on the nature of the nucleoside 5' of the target nucleoside. This is the first step in the biosynthesis of wybutosine (yW), a modified base adjacent to the anticodon of tRNAs and required for accurate decoding.
Vitis vinifera (taxid: 29760)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 2EC: 2EC: 8

>sp|Q93YU6|TRM51_ARATH tRNA (guanine(37)-N1)-methyltransferase 1 OS=Arabidopsis thaliana GN=At3g56120 PE=2 SV=1

 Score =  467 bits (1201), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 228/366 (62%), Positives = 272/366 (74%), Gaps = 27/366 (7%)

Query: 1   HIAHLNIHDELLPFKDVIAKVIYDKNYPRIKTVVNKVGTIANEFRVPEFEILAGEDNMVT 60
           HIAHLN+HDELLPFKDVIAKVIYDKNYPRIKT+VNKVGTI+NEFRVP+FE+LAGE+ M T
Sbjct: 122 HIAHLNLHDELLPFKDVIAKVIYDKNYPRIKTIVNKVGTISNEFRVPKFEVLAGENGMET 181

Query: 61  EVKQYGATFKLDYSLVYWNSRLEHEHLRIISQFRPGETICDMFAGIGPFAIPAAQKGCIV 120
           EVKQYGA FKLDY LVYWNSRLEHEH+R+ S F+PGET+CDMFAGIGPFAIPAAQKGC V
Sbjct: 182 EVKQYGARFKLDYGLVYWNSRLEHEHMRLSSLFKPGETVCDMFAGIGPFAIPAAQKGCFV 241

Query: 121 FANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFIRQLMTAPAGEINSESDVFNLKAC 180
           +ANDLNPDSV YLKINAK NKVD+ +  +NMDAR+F   LM     E N +S        
Sbjct: 242 YANDLNPDSVRYLKINAKFNKVDDLICVHNMDARKFFSHLMAVSTCEDNLQS-------- 293

Query: 181 GNSGIQANKKTGIENVGLDVQDKEVAGNITSNSEGLQNYCRNADASVT----ATKRPSDG 236
               +  N KT         ++  V+    +NS G +   R ++AS+     A K+PS  
Sbjct: 294 ----VADNDKT---------KEAAVSRGGETNSSGEE--IRESNASINEPLGANKKPSGT 338

Query: 237 CLEENGTTNSASGRKGKTSKRMKGSELPNTKTWEHVDHIIMNLPASALKFLDAFRGLIQR 296
              ENG        +G  +KR++ + LP  K WEH+DH+IMNLPASAL+FLD+F  +IQ+
Sbjct: 339 TKTENGVGKDCKSIEGHANKRLRQTLLPIAKPWEHIDHVIMNLPASALQFLDSFSNVIQK 398

Query: 297 QYWKGSLPWIHCYCFIRANETEELIISEAESALNACIQDPIFHKVRNVAPNKAMFCLSFR 356
           +YWKG LP IHCYCFIRA+ET E II+EAE+AL   I+DP+FHKVR+VAPNKAMFCLSFR
Sbjct: 399 KYWKGPLPLIHCYCFIRASETTEFIIAEAETALKFHIEDPVFHKVRDVAPNKAMFCLSFR 458

Query: 357 LPEACF 362
           LPEAC 
Sbjct: 459 LPEACL 464

Specifically methylates the N1 position of guanosine-37 in various cytoplasmic and mitochondrial tRNAs. Methylation is not dependent on the nature of the nucleoside 5' of the target nucleoside. This is the first step in the biosynthesis of wybutosine (yW), a modified base adjacent to the anticodon of tRNAs and required for accurate decoding.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 2

EC: 8

>sp|C5XX79|TRM5_SORBI tRNA (guanine(37)-N1)-methyltransferase OS=Sorghum bicolor GN=Sb04g025390 PE=3 SV=1

 Score =  451 bits (1161), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 223/365 (61%), Positives = 275/365 (75%), Gaps = 19/365 (5%)

Query: 1   HIAHLNIHDELLPFKDVIAKVIYDKNYPRIKTVVNKVGTIANEFRVPEFEILAGEDNMVT 60
           H+AHLNI D+LLP+K+VIAKVIYDKNYPRI+TV NKVGTI NEFRVP+FEILAG+++MVT
Sbjct: 104 HVAHLNISDDLLPYKNVIAKVIYDKNYPRIQTVANKVGTITNEFRVPKFEILAGKNDMVT 163

Query: 61  EVKQYGATFKLDYSLVYWNSRLEHEHLRIISQFRPGETICDMFAGIGPFAIPAAQKGCIV 120
           EVKQYGATFKLDY LVYWNSRL+HEH+R++S F+ G+ ICDMFAGIGPFAIPAAQKGC+V
Sbjct: 164 EVKQYGATFKLDYGLVYWNSRLDHEHIRLVSLFKKGDVICDMFAGIGPFAIPAAQKGCVV 223

Query: 121 FANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFIRQLMTAPAGEINSESDVFNLKAC 180
           +ANDLNPDSVHYL+ NAK+NKVD+Y+ AYNMDAR F++ LMT P  E  S+  V   ++ 
Sbjct: 224 YANDLNPDSVHYLRTNAKINKVDDYIFAYNMDARVFMQNLMTVPGLETGSDCQVAADESY 283

Query: 181 GNSGIQANKKTGIENVGLDVQDKEVAGNITSNSEGLQNYCRNAD-ASVTATKR--PSDGC 237
              G+ AN+ +               GN     EG QN    +  AS TA KR   S+ C
Sbjct: 284 PKEGVPANENSSSN------------GNHNDVREGSQNGANESSVASTTAKKRQQTSEEC 331

Query: 238 LEENGTTNSASGRKGKTSKRMKGSELPNTKTWEHVDHIIMNLPASALKFLDAFRGLIQRQ 297
            E +     AS  K + +KR++G   P +K WEH DH++MNLPASAL+FLD F GL+Q++
Sbjct: 332 -ESDCQDGDASQTKRRNNKRVRGPGPPPSKPWEHFDHVLMNLPASALQFLDCFDGLVQKK 390

Query: 298 YWKGSLPWIHCYCFIRANETEELIISEAESALNACIQDPIFHKVRNVAPNKAMFCLSFRL 357
           YW GSLPWIHCYCFIR++E+EE I+S   + LNA I +PIFH+VR+VAPNKAMFCLSF+L
Sbjct: 391 YWTGSLPWIHCYCFIRSSESEESILS---NKLNAKIAEPIFHRVRDVAPNKAMFCLSFKL 447

Query: 358 PEACF 362
           P  C 
Sbjct: 448 PMECL 452

Specifically methylates the N1 position of guanosine-37 in various cytoplasmic and mitochondrial tRNAs. Methylation is not dependent on the nature of the nucleoside 5' of the target nucleoside. This is the first step in the biosynthesis of wybutosine (yW), a modified base adjacent to the anticodon of tRNAs and required for accurate decoding.

Sorghum bicolor (taxid: 4558)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 2

EC: 8

>sp|A9T6G5|TRM5_PHYPA tRNA (guanine(37)-N1)-methyltransferase OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_141055 PE=3 SV=1

 Score =  345 bits (886), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 177/369 (47%), Positives = 243/369 (65%), Gaps = 42/369 (11%)

Query: 1   HIAHLNIHDELLPFKDVIAKVIYDKNYPRIKTVVNKVGTIANEFRVPEFEILAGEDNMVT 60
           HIAHLN+ ++LL +K +IA+VI DKN P++KTVVNKVGTI NEFRVPEFEILAGE ++VT
Sbjct: 131 HIAHLNLREDLLTYKKIIAEVILDKN-PKLKTVVNKVGTITNEFRVPEFEILAGEPSLVT 189

Query: 61  EVKQYGATFKLDYSLVYWNSRLEHEHLRIISQFRPGETICDMFAGIGPFAIPAAQKGCIV 120
           E+KQ+GATF+LDY +VYWNSRLE EH R+ +QF+PG+ I DMFAGIGPFAIPAAQ+GC V
Sbjct: 190 EIKQHGATFRLDYGMVYWNSRLEGEHKRLFAQFKPGQVIVDMFAGIGPFAIPAAQQGCAV 249

Query: 121 FANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFIRQLMTAPAGEINSESDVFNLKAC 180
           +ANDLNP SV +LK+N+ +NKV   ++A+N+DAREF+R+L+T   G +         +  
Sbjct: 250 YANDLNPTSVKFLKLNSDINKVGESIKAFNLDAREFMRKLVTEEEGCVG--------EIA 301

Query: 181 GNSGIQANKKTGIENVGLDVQDKEVAGNITSNSEGLQNYCRNADASVTATKRPSDGCLEE 240
            ++ I  N   G                I S+ E   +    +D  + ++K+P +     
Sbjct: 302 SSTLIAENSLNGT--------------RIPSSKENSSSLTEGSD--MPSSKKPEE----- 340

Query: 241 NGTTNSASGRKGKTSKRMKGSELPNTKTWEHVDHIIMNLPASALKFLDAFRGLIQRQYWK 300
                    +K K S+ +K  ++ + K WEH DH++MNLPASAL+FLD   GL+ +  WK
Sbjct: 341 ------RKAKKAKVSEVVK-MKISDVKPWEHFDHVVMNLPASALEFLDVLNGLLCKGRWK 393

Query: 301 GSLPWIHCYCFIRANETEELIISEAESALNACIQDPIFHKVRNVAPNKAMFCLSFRLPEA 360
           G++P +HCYCF+R+NET   I+ +AE+ L   I DP  + VR+VAPNKA    +     A
Sbjct: 394 GTMPRVHCYCFMRSNETNADIVKKAETYLGGSIADPDVYVVRDVAPNKASLAFT-----A 448

Query: 361 CFSAKITRS 369
             S  I+RS
Sbjct: 449 VVSWFISRS 457

Specifically methylates the N1 position of guanosine-37 in various cytoplasmic and mitochondrial tRNAs. Methylation is not dependent on the nature of the nucleoside 5' of the target nucleoside. This is the first step in the biosynthesis of wybutosine (yW), a modified base adjacent to the anticodon of tRNAs and required for accurate decoding.

Physcomitrella patens subsp. patens (taxid: 145481)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 2

EC: 8

>sp|D0NLC2|TRM5_PHYIT tRNA (guanine(37)-N1)-methyltransferase OS=Phytophthora infestans (strain T30-4) GN=PITG_12867 PE=3 SV=1

 Score =  191 bits (486), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 89/162 (54%), Positives = 117/162 (72%), Gaps = 1/162 (0%)

Query: 1   HIAHLNIHDELLPFKDVIAKVIYDKNYPRIKTVVNKVGTIANEFRVPEFEILAGEDNMVT 60
           HIAHLN+ D  LPFK+VI +VI DKN  +I+TVVNK   I  +FR    E+LAG+D+M  
Sbjct: 132 HIAHLNLRDNQLPFKNVIGQVILDKN-AQIRTVVNKTDNIETKFRTFPMEVLAGDDDMEV 190

Query: 61  EVKQYGATFKLDYSLVYWNSRLEHEHLRIISQFRPGETICDMFAGIGPFAIPAAQKGCIV 120
           EV +  A+F+ +Y+ VYWNSRL+ EHLRII Q +P + +CDM  GIGPFA+P A  G  V
Sbjct: 191 EVHESKASFRFNYAEVYWNSRLQQEHLRIIRQIKPHDVVCDMMCGIGPFAVPVALNGSKV 250

Query: 121 FANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFIRQLMT 162
           +ANDLNP S HYLK N  +NKV+  V AYN+D R+F+ +L++
Sbjct: 251 YANDLNPRSYHYLKENIALNKVEKLVTAYNLDGRDFLAKLLS 292

Specifically methylates the N1 position of guanosine-37 in various cytoplasmic and mitochondrial tRNAs. Methylation is not dependent on the nature of the nucleoside 5' of the target nucleoside. This is the first step in the biosynthesis of wybutosine (yW), a modified base adjacent to the anticodon of tRNAs and required for accurate decoding.

Phytophthora infestans (strain T30-4) (taxid: 403677)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 2

EC: 8

>sp|C8VJ35|TRM5_EMENI tRNA (guanine(37)-N1)-methyltransferase OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=trm5 PE=3 SV=1

 Score =  188 bits (478), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 123/386 (31%), Positives = 178/386 (46%), Gaps = 94/386 (24%)

Query: 1   HIAHLNIHDELLPFKDVIAKVIYDKNYPRIKTVVNKVGTIAN--EFRVPEFEILAGEDNM 58
           H+A LN+ ++ +P++ +IA+V+ DKN P ++TV+ K   + +  EFR   +E+LAG+ +M
Sbjct: 157 HVAQLNLREQFIPWRHLIAQVLLDKN-PTLRTVIRKTEDVGSQSEFRTFPYELLAGDSDM 215

Query: 59  VTEVKQYGATFKLDYSLVYWNSRLEHEHLRIISQFRPGETICDMFAGIGPFAIPAAQKGC 118
                +    F+ D+S VYWNSRL  EH R++  F+PGE +CD+ AG+GPFAIPA +K  
Sbjct: 216 NVIQHEQDCEFRFDFSRVYWNSRLHTEHQRLVDLFKPGEMVCDVMAGVGPFAIPAGKKKI 275

Query: 119 IVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFIRQLMTAPAGEINSESDVFNLK 178
            V+ANDLNP     ++   K NKV  +V  +N D R FIR                    
Sbjct: 276 FVWANDLNPHGYEVMQDAVKRNKVFKFVTPFNQDGRSFIRW------------------- 316

Query: 179 ACGNSGIQANKKTGIENVGLDVQDKEVAGNITSNSEGLQNYCRNADASVTATKRPSDGCL 238
                                            ++  LQ Y       VT T +P     
Sbjct: 317 ---------------------------------SARALQKY-----DPVTVTIQP----- 333

Query: 239 EENGTTNSASGRKGKTSKRMKGSELPNTKTWEHVDHIIMNLPASALKFLDAFRGL----- 293
                T  ASG+  +T   ++    P         H +MNLP +AL+FLDAF G+     
Sbjct: 334 -RTKRTRDASGQVKETQPPLEVYTRPKV-----FHHYVMNLPGNALEFLDAFIGVYAGCE 387

Query: 294 -IQRQYWKGSLPWIHCYCFIRANETEELIISEAESALNACIQDPI--------------- 337
            +   + K  LP +H YCF   +E E     +    ++  ++ PI               
Sbjct: 388 ELFEPHTKEQLPMVHVYCFSGHSENEVDDHIDICKRMSERLEYPITVEDRVGGAGNTELE 447

Query: 338 --FHKVRNVAPNKAMFCLSFRLPEAC 361
              H VR V+PNK MFC SFRLP A 
Sbjct: 448 LSIHNVRLVSPNKQMFCASFRLPRAV 473

Specifically methylates the N1 position of guanosine-37 in various cytoplasmic and mitochondrial tRNAs. Methylation is not dependent on the nature of the nucleoside 5' of the target nucleoside. This is the first step in the biosynthesis of wybutosine (yW), a modified base adjacent to the anticodon of tRNAs and required for accurate decoding.

Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) (taxid: 227321)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 2

EC: 8

>sp|A2E5K9|TRM5_TRIVA tRNA (guanine(37)-N1)-methyltransferase OS=Trichomonas vaginalis GN=TVAG_038970 PE=3 SV=1

 Score =  183 bits (465), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 90/159 (56%), Positives = 116/159 (72%), Gaps = 1/159 (0%)

Query: 1   HIAHLNIHDELLPFKDVIAKVIYDKNYPRIKTVVNKVGTIANEFRVPEFEILAGEDNMVT 60
           HIAHLN+ DELLP+K VI + I  KN P IKTV  K G I N +R  E E++AG+++ +T
Sbjct: 112 HIAHLNLPDELLPYKKVIGECIILKN-PCIKTVAIKQGPINNVYRNMELEVIAGKNDFIT 170

Query: 61  EVKQYGATFKLDYSLVYWNSRLEHEHLRIISQFRPGETICDMFAGIGPFAIPAAQKGCIV 120
           EVKQ G TFK+D+S VYWNSRL++EH  +++ F+    +CD   GIGPFA+ AA+KGC V
Sbjct: 171 EVKQSGFTFKMDFSKVYWNSRLQYEHDSVVATFKENSLVCDAMCGIGPFAVRAAKKGCRV 230

Query: 121 FANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFIRQ 159
            ANDLNPDS ++LK N K+N V   V  +NMDAREFIR+
Sbjct: 231 RANDLNPDSYYWLKENCKINGVSENVECFNMDAREFIRK 269

Specifically methylates the N1 position of guanosine-37 in various cytoplasmic and mitochondrial tRNAs. Methylation is not dependent on the nature of the nucleoside 5' of the target nucleoside. This is the first step in the biosynthesis of wybutosine (yW), a modified base adjacent to the anticodon of tRNAs and required for accurate decoding.

Trichomonas vaginalis (taxid: 5722)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 2

EC: 8

>sp|B8A5G9|TRM5_DANRE tRNA (guanine(37)-N1)-methyltransferase OS=Danio rerio GN=trmt5 PE=2 SV=1

 Score =  182 bits (462), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 83/158 (52%), Positives = 114/158 (72%), Gaps = 1/158 (0%)

Query: 1   HIAHLNIHDELLPFKDVIAKVIYDKNYPRIKTVVNKVGTIANEFRVPEFEILAGEDNMVT 60
           HIAH+N+ +  LP++ +I +VI DKN P I  VVNK  TI + +R  + E+LAGE NMV 
Sbjct: 189 HIAHMNLREHQLPYRKLIGQVIIDKN-PGITCVVNKTNTIDSTYRNFQMEVLAGESNMVA 247

Query: 61  EVKQYGATFKLDYSLVYWNSRLEHEHLRIISQFRPGETICDMFAGIGPFAIPAAQKGCIV 120
           +V++ G  ++ D+S VYWN RL  EH RI+S    G+T+ D+FAG+GPFAIPAA++GC V
Sbjct: 248 KVRENGVLYEFDFSRVYWNPRLSTEHERIVSLLHRGDTVVDVFAGVGPFAIPAARRGCAV 307

Query: 121 FANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFIR 158
            ANDLNP+S  +L+ NAK+NKVD  +   N+D R+FIR
Sbjct: 308 LANDLNPESFRWLQHNAKLNKVDQKITTSNLDGRDFIR 345

Specifically methylates the N1 position of guanosine-37 in various cytoplasmic and mitochondrial tRNAs. Methylation is not dependent on the nature of the nucleoside 5' of the target nucleoside. This is the first step in the biosynthesis of wybutosine (yW), a modified base adjacent to the anticodon of tRNAs and required for accurate decoding.

Danio rerio (taxid: 7955)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 2

EC: 8

>sp|Q4PHW2|TRM5_USTMA tRNA (guanine(37)-N1)-methyltransferase OS=Ustilago maydis (strain 521 / FGSC 9021) GN=TRM5 PE=3 SV=2

 Score =  181 bits (460), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 128/401 (31%), Positives = 192/401 (47%), Gaps = 56/401 (13%)

Query: 1   HIAHLNIHDELLPFKDVIAKVIYDKNYPRIKTVVNKVGTIANEFRVPEFEILAGEDNMVT 60
           HIAHLN+     PF+ ++  +I  K+   ++TVVNK+ +I  +FR  E E+LAGE + V 
Sbjct: 180 HIAHLNLLSVYKPFRFLVGHIILSKHIGTLRTVVNKLDSIDTQFRFFEMELLAGEADFVA 239

Query: 61  EVKQYGATFKLDYSLVYWNSRLEHEHLRIISQFRPGETICDMFAGIGPFAIPAAQKGCIV 120
           +V +   +F+ D+  VYWNSRL  EH+R+I + RP + + D+ AG+GPFA+PAA++G  V
Sbjct: 240 QVSESDCSFQFDFRSVYWNSRLHAEHMRLIKKCRPNQVLADVMAGVGPFAVPAAKRGTWV 299

Query: 121 FANDLNPDSVHYLKINAKVNKV-----------DNYVRAYNMDAREFIRQLMTAPAGEIN 169
            ANDLNP S   L  NA++NKV           D  + A  MD REF+R           
Sbjct: 300 LANDLNPSSYESLTKNAEINKVLLREGEAKPDKDGGLVATCMDGREFVR----------- 348

Query: 170 SESDVFNLKACGNSGIQANKKTGIENVGLDVQDKEVAGNITSNSEGLQNYCRNADASVTA 229
                +++      G  A +  G +    DVQD +    +  ++  ++      + ++ A
Sbjct: 349 -----WSMLEVWKRGF-AGRPMGFDGEQFDVQDDK----LRQSARKMRKEQAKKNRALYA 398

Query: 230 TKRPSDGCLEENGTTNSASGRKGKTSKRMKGSEL-PNTKTWEHVDHIIMNLPASALKFLD 288
            ++  +       +  + S  +   +  M   E  P  K    VDH +MNLPA AL+FLD
Sbjct: 399 VRQAENTLEGAAESLANLSVDEPDVAATMGQVERHPERKL---VDHFVMNLPAIALEFLD 455

Query: 289 AFRG--------------LIQRQYWK-----GSLPWIHCYCFIRANETEEL-IISEAESA 328
           AFRG              L Q +  K       LP IH +CF +   T  L I++ A  A
Sbjct: 456 AFRGAYTHLATIVGKQRLLCQLELHKLDASIHRLPMIHVHCFSKDPFTPALDILTRANEA 515

Query: 329 LNACIQDPIFHKVRNVAPNKAMFCLSFRLPEACFSAKITRS 369
           LN     P     + + P    F    +L +A  SA    S
Sbjct: 516 LNIPRDAPYRLMAKPILPPAQTFAGLRKLCDASQSASYLSS 556

Specifically methylates the N1 position of guanosine-37 in various cytoplasmic and mitochondrial tRNAs. Methylation is not dependent on the nature of the nucleoside 5' of the target nucleoside. This is the first step in the biosynthesis of wybutosine (yW), a modified base adjacent to the anticodon of tRNAs and required for accurate decoding.

Ustilago maydis (strain 521 / FGSC 9021) (taxid: 237631)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 2

EC: 8

>sp|Q8TFG7|TRM5_SCHPO tRNA (guanine(37)-N1)-methyltransferase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=trm5 PE=3 SV=2

 Score =  180 bits (457), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 86/158 (54%), Positives = 112/158 (70%), Gaps = 1/158 (0%)

Query: 1   HIAHLNIHDELLPFKDVIAKVIYDKNYPRIKTVVNKVGTIANEFRVPEFEILAGEDNMVT 60
           HIAH+N+ +E LP+K +I KVI DKN P I+TVVNK  TI  +FR  + E+LAG+D+ + 
Sbjct: 147 HIAHMNLREEWLPYKYIIGKVILDKN-PSIETVVNKTDTIDTKFRTFQMEVLAGKDDFIV 205

Query: 61  EVKQYGATFKLDYSLVYWNSRLEHEHLRIISQFRPGETICDMFAGIGPFAIPAAQKGCIV 120
              +    F+ D+S VYWNSRL  EH R+I QF+PG+ +CD+ AG+GPFA PA +K  IV
Sbjct: 206 TQSESNCKFRFDFSKVYWNSRLSTEHDRLIQQFQPGDAVCDVMAGVGPFACPAGKKNVIV 265

Query: 121 FANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFIR 158
           FANDLNP S   L  N  +NKV N+V+A+N D REFIR
Sbjct: 266 FANDLNPYSYESLVENIFLNKVANFVKAFNQDGREFIR 303

Specifically methylates the N1 position of guanosine-37 in various cytoplasmic and mitochondrial tRNAs. Methylation is not dependent on the nature of the nucleoside 5' of the target nucleoside. This is the first step in the biosynthesis of wybutosine (yW), a modified base adjacent to the anticodon of tRNAs and required for accurate decoding.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 2

EC: 8

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	380
225445326	506	PREDICTED: tRNA (guanine-N(1)-)-methyltr	0.986	0.741	0.691	1e-152
363805568	510	RecName: Full=tRNA (guanine(37)-N1)-meth	0.986	0.735	0.691	1e-152
297738868	983	unnamed protein product [Vitis vinifera]	0.986	0.381	0.691	1e-151
255549036	544	conserved hypothetical protein [Ricinus	0.939	0.656	0.689	1e-148
449443135	497	PREDICTED: tRNA (guanine(37)-N1)-methylt	0.952	0.728	0.660	1e-143
356563095	472	PREDICTED: LOW QUALITY PROTEIN: tRNA (gu	0.889	0.716	0.651	1e-134
356511609	460	PREDICTED: LOW QUALITY PROTEIN: tRNA (gu	0.865	0.715	0.665	1e-132
18410430	468	S-adenosyl-L-methionine-dependent methyl	0.892	0.724	0.622	1e-129
7572910	447	putative protein [Arabidopsis thaliana]	0.892	0.758	0.622	1e-129
222623203	494	hypothetical protein OsJ_07451 [Oryza sa	0.947	0.728	0.593	1e-129

>gi|225445326|ref|XP_002281488.1| PREDICTED: tRNA (guanine-N(1)-)-methyltransferase, mitochondrial-like [Vitis vinifera]

 Score =  545 bits (1403), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 265/383 (69%), Positives = 311/383 (81%), Gaps = 8/383 (2%)

Query: 1   HIAHLNIHDELLPFKDVIAKVIYDKNYPRIKTVVNKVGTIANEFRVPEFEILAGEDNMVT 60
           HIAHLNI  ELLP+KDVIAKVIYDKNYPRIKTVVNKVGTI NEFRVP+FEIL G+D+MVT
Sbjct: 123 HIAHLNITGELLPYKDVIAKVIYDKNYPRIKTVVNKVGTITNEFRVPKFEILVGKDDMVT 182

Query: 61  EVKQYGATFKLDYSLVYWNSRLEHEHLRIISQFRPGETICDMFAGIGPFAIPAAQKGCIV 120
           EVKQY ATFKLDYSLVYWNSRLEHEH+R++SQFRPG+ ICDMF+G+GPFAIPAAQKGC+V
Sbjct: 183 EVKQYRATFKLDYSLVYWNSRLEHEHMRLVSQFRPGQIICDMFSGVGPFAIPAAQKGCLV 242

Query: 121 FANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFIRQLMTAPAGEINSESDVFNLKAC 180
           +ANDLNPDS+ YLKINAK+NKVD+ + AYNMDAR+FI QLM  P  EI  E DV  LKA 
Sbjct: 243 YANDLNPDSIRYLKINAKINKVDDNIWAYNMDARKFISQLMEVPVHEILPEPDVPVLKAT 302

Query: 181 GNSGIQANKKTGIENVGLDVQDKEVAGNITSNSEGLQNYCRNADASVTATKRPSDGCLEE 240
               IQAN +T  +N GL V+   V  + +SN +G++  C  AD +V A K+ S  C EE
Sbjct: 303 EECSIQANVQTESQNGGLTVEAIGVHSDDSSNMDGIEGSCTVADDTVAAVKKHSGSCEEE 362

Query: 241 NGTTNSAS-----GRKGKTSKRMKGSE-LPNTKTWEHVDHIIMNLPASALKFLDAFRGLI 294
           NGT ++A+      RK + +KRM+GSE   N K WEHVDH+IMNLPASA++FLDAFRGLI
Sbjct: 363 NGTYDNATVSVVGRRKDRMNKRMRGSESSSNIKPWEHVDHVIMNLPASAIQFLDAFRGLI 422

Query: 295 QRQYWKGSLPWIHCYCFIRANETEELIISEAESALNACIQDPIFHKVRNVAPNKAMFCLS 354
           QR+YWKGSLPWIHCYCFIRANET E+IISEAE+ALNA IQ+PI H+VR+VAPNKAMFCLS
Sbjct: 423 QRKYWKGSLPWIHCYCFIRANETNEMIISEAETALNASIQEPILHRVRDVAPNKAMFCLS 482

Query: 355 FRLP-EACFSAKITRS-VQSAGE 375
           FRL  EACF    T+S + S+G+
Sbjct: 483 FRLSEEACFKEDATKSLLDSSGD 505

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363805568|sp|F6HH45.1|TRM52_VITVI RecName: Full=tRNA (guanine(37)-N1)-methyltransferase 2; AltName: Full=M1G-methyltransferase 2; AltName: Full=tRNA [GM37] methyltransferase 2; AltName: Full=tRNA methyltransferase 5 homolog 2

 Score =  544 bits (1402), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 265/383 (69%), Positives = 311/383 (81%), Gaps = 8/383 (2%)

Query: 1   HIAHLNIHDELLPFKDVIAKVIYDKNYPRIKTVVNKVGTIANEFRVPEFEILAGEDNMVT 60
           HIAHLNI  ELLP+KDVIAKVIYDKNYPRIKTVVNKVGTI NEFRVP+FEIL G+D+MVT
Sbjct: 127 HIAHLNITGELLPYKDVIAKVIYDKNYPRIKTVVNKVGTITNEFRVPKFEILVGKDDMVT 186

Query: 61  EVKQYGATFKLDYSLVYWNSRLEHEHLRIISQFRPGETICDMFAGIGPFAIPAAQKGCIV 120
           EVKQY ATFKLDYSLVYWNSRLEHEH+R++SQFRPG+ ICDMF+G+GPFAIPAAQKGC+V
Sbjct: 187 EVKQYRATFKLDYSLVYWNSRLEHEHMRLVSQFRPGQIICDMFSGVGPFAIPAAQKGCLV 246

Query: 121 FANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFIRQLMTAPAGEINSESDVFNLKAC 180
           +ANDLNPDS+ YLKINAK+NKVD+ + AYNMDAR+FI QLM  P  EI  E DV  LKA 
Sbjct: 247 YANDLNPDSIRYLKINAKINKVDDNIWAYNMDARKFISQLMEVPVHEILPEPDVPVLKAT 306

Query: 181 GNSGIQANKKTGIENVGLDVQDKEVAGNITSNSEGLQNYCRNADASVTATKRPSDGCLEE 240
               IQAN +T  +N GL V+   V  + +SN +G++  C  AD +V A K+ S  C EE
Sbjct: 307 EECSIQANVQTESQNGGLTVEAIGVHSDDSSNMDGIEGSCTVADDTVAAVKKHSGSCEEE 366

Query: 241 NGTTNSAS-----GRKGKTSKRMKGSE-LPNTKTWEHVDHIIMNLPASALKFLDAFRGLI 294
           NGT ++A+      RK + +KRM+GSE   N K WEHVDH+IMNLPASA++FLDAFRGLI
Sbjct: 367 NGTYDNATVSVVGRRKDRMNKRMRGSESSSNIKPWEHVDHVIMNLPASAIQFLDAFRGLI 426

Query: 295 QRQYWKGSLPWIHCYCFIRANETEELIISEAESALNACIQDPIFHKVRNVAPNKAMFCLS 354
           QR+YWKGSLPWIHCYCFIRANET E+IISEAE+ALNA IQ+PI H+VR+VAPNKAMFCLS
Sbjct: 427 QRKYWKGSLPWIHCYCFIRANETNEMIISEAETALNASIQEPILHRVRDVAPNKAMFCLS 486

Query: 355 FRLP-EACFSAKITRS-VQSAGE 375
           FRL  EACF    T+S + S+G+
Sbjct: 487 FRLSEEACFKEDATKSLLDSSGD 509

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class: N/A

Phylum: Streptophyta

>gi|297738868|emb|CBI28113.3| unnamed protein product [Vitis vinifera]

 Score =  540 bits (1392), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 264/382 (69%), Positives = 307/382 (80%), Gaps = 7/382 (1%)

Query: 1   HIAHLNIHDELLPFKDVIAKVIYDKNYPRIKTVVNKVGTIANEFRVPEFEILAGEDNMVT 60
           HIAHLNI  ELLP+KDVIAKVIYDKNYPRIKTVVNKVGTI NEFRVP+FEIL G+D+MVT
Sbjct: 127 HIAHLNITGELLPYKDVIAKVIYDKNYPRIKTVVNKVGTITNEFRVPKFEILVGKDDMVT 186

Query: 61  EVKQYGATFKLDYSLVYWNSRLEHEHLRIISQFRPGETICDMFAGIGPFAIPAAQKGCIV 120
           EVKQY ATFKLDYSLVYWNSRLEHEH+R++SQFRPG+ ICDMF+G+GPFAIPAAQKGC+V
Sbjct: 187 EVKQYRATFKLDYSLVYWNSRLEHEHMRLVSQFRPGQIICDMFSGVGPFAIPAAQKGCLV 246

Query: 121 FANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFIRQLMTAPAGEINSESDVFNLKAC 180
           +ANDLNPDS+ YLKINAK+NKVD+ + AYNMDAR+FI QLM  P  EI  E DV  LKA 
Sbjct: 247 YANDLNPDSIRYLKINAKINKVDDNIWAYNMDARKFISQLMEVPVHEILPEPDVPVLKAT 306

Query: 181 GNSGIQANKKTGIENVGLDVQDKEVAGNITSNSEGLQNYCRNADASVTATKRPSDGCLEE 240
               IQAN +T  +N GL V+   V  + +SN +G++  C  AD +V A K+ S  C EE
Sbjct: 307 EECSIQANVQTESQNGGLTVEAIGVHSDDSSNMDGIEGSCTVADDTVAAVKKHSGSCEEE 366

Query: 241 NGTTNSAS-----GRKGKTSKRMKGSE-LPNTKTWEHVDHIIMNLPASALKFLDAFRGLI 294
           NGT ++A+      RK + +KRM+GSE   N K WEHVDH+IMNLPASA++FLDAFRGLI
Sbjct: 367 NGTYDNATVSVVGRRKDRMNKRMRGSESSSNIKPWEHVDHVIMNLPASAIQFLDAFRGLI 426

Query: 295 QRQYWKGSLPWIHCYCFIRANETEELIISEAESALNACIQDPIFHKVRNVAPNKAMFCLS 354
           QR+YWKGSLPWIHCYCFIRANET E+IISEAE+ALNA IQ+PI H+VR+VAPNKAMFCLS
Sbjct: 427 QRKYWKGSLPWIHCYCFIRANETNEMIISEAETALNASIQEPILHRVRDVAPNKAMFCLS 486

Query: 355 FRLP-EACFSAKITRSVQSAGE 375
           FRL  EACF    T+   S  E
Sbjct: 487 FRLSEEACFKEDATKKRTSFKE 508

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255549036|ref|XP_002515574.1| conserved hypothetical protein [Ricinus communis] gi|223545518|gb|EEF47023.1| conserved hypothetical protein [Ricinus communis]

 Score =  532 bits (1371), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 253/367 (68%), Positives = 296/367 (80%), Gaps = 10/367 (2%)

Query: 1   HIAHLNIHDELLPFKDVIAKVIYDKNYPRIKTVVNKVGTIANEFRVPEFEILAGEDNMVT 60
           HIAHLNIHDELLP+KDVIAKVIYDKNYPRIKT+VNKVGTI NEFRVP+FE+LAGE++MVT
Sbjct: 169 HIAHLNIHDELLPYKDVIAKVIYDKNYPRIKTIVNKVGTITNEFRVPKFEVLAGENDMVT 228

Query: 61  EVKQYGATFKLDYSLVYWNSRLEHEHLRIISQFRPGETICDMFAGIGPFAIPAAQKGCIV 120
           EVKQYGATFKLDY LVYWNSRLEHEH+R++SQF+PG+TICDMFAGIGPFAIPAAQKGC+V
Sbjct: 229 EVKQYGATFKLDYGLVYWNSRLEHEHIRLVSQFQPGDTICDMFAGIGPFAIPAAQKGCVV 288

Query: 121 FANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFIRQLMTAPAGEINSESDVFNLKAC 180
           +ANDLNPDS  YLKINAK+NKVD+ + AYNMDAR FI  LM  P+ E + ES+   LKAC
Sbjct: 289 YANDLNPDSFQYLKINAKLNKVDDLIFAYNMDARTFISHLMAVPSYENDLESNSPTLKAC 348

Query: 181 GNSGIQANKKTGIENVGLDVQDKEVAGNITSNSEGLQNYCRNADASVTATKRPSDGCLEE 240
            N  IQA ++T +  V  +V DK     ++S+ E  Q+ CR  DA V A KRPS  C E 
Sbjct: 349 QNHRIQAYEETQVAVVVKEVPDK-----VSSDHEFAQDQCRKGDAFVAAVKRPSTCCQEG 403

Query: 241 NG-----TTNSASGRKGKTSKRMKGSELPNTKTWEHVDHIIMNLPASALKFLDAFRGLIQ 295
           NG       +S S RKG  +KR++ SELPNTK WEHVDH+IMNLPASAL+FLD+F  +IQ
Sbjct: 404 NGNPHGAAISSTSKRKGSINKRLRASELPNTKPWEHVDHVIMNLPASALQFLDSFSSVIQ 463

Query: 296 RQYWKGSLPWIHCYCFIRANETEELIISEAESALNACIQDPIFHKVRNVAPNKAMFCLSF 355
           R+ WKG+LP IHCYCF+RA ET+E I+ EAES + A IQ PIFH+VR+VAPNKAMFCLSF
Sbjct: 464 RKDWKGALPCIHCYCFMRATETKESIVLEAESTIGAPIQGPIFHRVRDVAPNKAMFCLSF 523

Query: 356 RLPEACF 362
           RLPE C 
Sbjct: 524 RLPEGCL 530

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449443135|ref|XP_004139336.1| PREDICTED: tRNA (guanine(37)-N1)-methyltransferase 2-like [Cucumis sativus] gi|449518119|ref|XP_004166091.1| PREDICTED: tRNA (guanine(37)-N1)-methyltransferase 2-like [Cucumis sativus]

 Score =  515 bits (1326), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 247/374 (66%), Positives = 294/374 (78%), Gaps = 12/374 (3%)

Query: 1   HIAHLNIHDELLPFKDVIAKVIYDKNYPRIKTVVNKVGTIANEFRVPEFEILAGEDNMVT 60
           H+AHLNIHDELLP+KDVIAKVIYDKNYPRIKTVVNKVG+I NEFRVP+FEIL GE++MVT
Sbjct: 128 HVAHLNIHDELLPYKDVIAKVIYDKNYPRIKTVVNKVGSITNEFRVPKFEILKGENDMVT 187

Query: 61  EVKQYGATFKLDYSLVYWNSRLEHEHLRIISQFRPGETICDMFAGIGPFAIPAAQKGCIV 120
           EVKQYGATFKLDYSLVYWNSRLEHEH+R++S F+PGE ICDMFAGIGPFAIPAAQK CIV
Sbjct: 188 EVKQYGATFKLDYSLVYWNSRLEHEHIRLVSLFQPGEVICDMFAGIGPFAIPAAQKECIV 247

Query: 121 FANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFIRQLMTAPAGEINSESDVFNLKAC 180
           +ANDLNPDS+ YLK+NA++NKV   V  YN+DAR+FI QLM  P  E NSES    LKAC
Sbjct: 248 YANDLNPDSIRYLKVNAEINKVSGRVHVYNLDARKFISQLMIVPPNESNSESVTSILKAC 307

Query: 181 GNSGIQANKKTGIENVGLDVQDKEVAGNITSNSEGLQNYCRNADASVTATKRPSDGC--- 237
                  N+++ + N    VQ +EV   I  +++ ++   R+AD SV   KR S+ C   
Sbjct: 308 EKGIGGTNQESPLAN----VQVQEVQDYIKISNKSVEQ-SRSADISVAVLKRSSESCENE 362

Query: 238 ----LEENGTTNSASGRKGKTSKRMKGSELPNTKTWEHVDHIIMNLPASALKFLDAFRGL 293
               + ++ +T  A  R G  +KRMKGS + + +TWEHVDH+IMNLPASAL FLDAFRG 
Sbjct: 363 KDNGIADDASTRVAGRRNGNGNKRMKGSSVSHARTWEHVDHVIMNLPASALHFLDAFRGS 422

Query: 294 IQRQYWKGSLPWIHCYCFIRANETEELIISEAESALNACIQDPIFHKVRNVAPNKAMFCL 353
           I+++YWKGSLPWIHCYCF+RANE ++ IISEAESALNA IQDPIFH+VR+VAPNKAM+CL
Sbjct: 423 IKKKYWKGSLPWIHCYCFMRANENQDFIISEAESALNANIQDPIFHRVRDVAPNKAMYCL 482

Query: 354 SFRLPEACFSAKIT 367
           SFRLPE C     T
Sbjct: 483 SFRLPEQCVDEDTT 496

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356563095|ref|XP_003549801.1| PREDICTED: LOW QUALITY PROTEIN: tRNA (guanine-N(1)-)-methyltransferase-like [Glycine max]

 Score =  483 bits (1244), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 241/370 (65%), Positives = 280/370 (75%), Gaps = 32/370 (8%)

Query: 1   HIAHLNIHDELLPFKDVIAKVIYDKNYPRIKTVVNKVGTIANEFRVPEFEILAGEDNMVT 60
            IAHLN+HDELLP+KDVIAKVIYDKNYPRIKT+VNKVGTI NEFRVPEFEILAGE NM+T
Sbjct: 122 QIAHLNLHDELLPYKDVIAKVIYDKNYPRIKTIVNKVGTITNEFRVPEFEILAGEHNMIT 181

Query: 61  EVKQYGATFKLDYSLVYWNSRLEHEHLRIISQFRPGETICDMFAGIGPFAIPAAQKGCIV 120
           EVKQYGATF+LDY LVYWNSRLEHEH R++S F+ G+TICDMF GIGPFAIPAAQKGCIV
Sbjct: 182 EVKQYGATFRLDYRLVYWNSRLEHEHKRLVSMFQAGQTICDMFTGIGPFAIPAAQKGCIV 241

Query: 121 FANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFIRQLMTAPAGEINSES--DVFNLK 178
           +ANDLNPDS+HYL+INAK+NKVD+ + AYNMDAR+FI Q+M  P  E+  E+  +V  L 
Sbjct: 242 YANDLNPDSIHYLRINAKINKVDDRIYAYNMDARKFISQMMEVPNNEVTLETSHEVPILD 301

Query: 179 ACGNSGIQANKKTGIENVGLDVQDKEVAGNITSNSEGLQ-NYCR-----NADASVTATKR 232
              N+   +  +   EN+           NI +N  G   NY R     N +A  T    
Sbjct: 302 TRDNAESNSENELLTENI----------CNIDNNLXGXNXNYSRFHLTGNGEAHGTDI-- 349

Query: 233 PSDGCLEENGTTNSASGRKGKTSKRMKGSELPNTKTWEHVDHIIMNLPASALKFLDAFRG 292
             +GC            RKG T+KRM+GSE+  TKTWEHVDH+IMNLPASA++FLDAFRG
Sbjct: 350 -LEGC-----------RRKGSTNKRMRGSEICVTKTWEHVDHVIMNLPASAVQFLDAFRG 397

Query: 293 LIQRQYWKGSLPWIHCYCFIRANETEELIISEAESALNACIQDPIFHKVRNVAPNKAMFC 352
           LIQ++YWKG LPWIHCYCFIRA ET E II+ AESALN  IQD  FH+VR+VAPNKAM+C
Sbjct: 398 LIQKKYWKGCLPWIHCYCFIRATETPETIIAVAESALNTRIQDSTFHRVRDVAPNKAMYC 457

Query: 353 LSFRLPEACF 362
           LSFRLPEAC 
Sbjct: 458 LSFRLPEACL 467

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356511609|ref|XP_003524516.1| PREDICTED: LOW QUALITY PROTEIN: tRNA (guanine-N(1)-)-methyltransferase-like [Glycine max]

 Score =  479 bits (1232), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 243/365 (66%), Positives = 277/365 (75%), Gaps = 36/365 (9%)

Query: 2   IAHLNIHDELLPFKDVIAKVIYDKNYPRIKTVVNKVGTIANEFRVPEFEILAGEDNMVTE 61
           IAHLN+HDELLP KDVIAKVIYDKNYPRIKT+VNKVGTI NEFRVPEFEILAGE NM+TE
Sbjct: 123 IAHLNLHDELLPHKDVIAKVIYDKNYPRIKTIVNKVGTITNEFRVPEFEILAGEHNMITE 182

Query: 62  VKQYGATFKLDYSLVYWNSRLEHEHLRIISQFRPGETICDMFAGIGPFAIPAAQKGCIVF 121
           VKQYGATF+LDYSLVYWNSRLEHEH R++S F+ GETICDMFAGIGPFAIPAAQKGCIV+
Sbjct: 183 VKQYGATFRLDYSLVYWNSRLEHEHKRLVSMFQAGETICDMFAGIGPFAIPAAQKGCIVY 242

Query: 122 ANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFIRQLMTAPAGEINSESDVFNLKACG 181
           ANDLNPDS+HYL+INAK+NKV + + AYNMDAR+FI Q+M  P  E+  E+         
Sbjct: 243 ANDLNPDSIHYLRINAKINKVGDCIYAYNMDARKFISQMMEVPNTEVTLEN--------- 293

Query: 182 NSGIQANKKTGIENVGLDVQDKEVAGNITSNSEG---LQNYCRNADASVTATKRPSDGCL 238
                       E   LD +D     N  SNS+     +N C N D  +        G  
Sbjct: 294 ----------SHEVPILDTRD-----NAESNSKNELLTENNC-NIDNKLX-------GNG 330

Query: 239 EENGTTNSASG-RKGKTSKRMKGSELPNTKTWEHVDHIIMNLPASALKFLDAFRGLIQRQ 297
           E +GT     G RKG  +KRM+GSE+  TKTWEHVDH+IMNLPASA++FLDAFRGLIQ++
Sbjct: 331 EAHGTDILEGGRRKGSANKRMRGSEISVTKTWEHVDHVIMNLPASAVQFLDAFRGLIQKK 390

Query: 298 YWKGSLPWIHCYCFIRANETEELIISEAESALNACIQDPIFHKVRNVAPNKAMFCLSFRL 357
           YWKG LPWIHCYCFIRA ET E II+ AESAL+A IQD  FH+VR+VAPNKAMFCLSFRL
Sbjct: 391 YWKGCLPWIHCYCFIRATETPETIIAVAESALDAHIQDSRFHRVRDVAPNKAMFCLSFRL 450

Query: 358 PEACF 362
           PEAC 
Sbjct: 451 PEACL 455

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18410430|ref|NP_567034.1| S-adenosyl-L-methionine-dependent methyltransferase-like protein [Arabidopsis thaliana] gi|75163665|sp|Q93YU6.1|TRM51_ARATH RecName: Full=tRNA (guanine(37)-N1)-methyltransferase 1; AltName: Full=M1G-methyltransferase 1; AltName: Full=tRNA [GM37] methyltransferase 1; AltName: Full=tRNA methyltransferase 5 homolog 1 gi|16604635|gb|AAL24110.1| unknown protein [Arabidopsis thaliana] gi|28393917|gb|AAO42366.1| unknown protein [Arabidopsis thaliana] gi|332645959|gb|AEE79480.1| S-adenosyl-L-methionine-dependent methyltransferase-like protein [Arabidopsis thaliana]

 Score =  467 bits (1201), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 228/366 (62%), Positives = 272/366 (74%), Gaps = 27/366 (7%)

Query: 1   HIAHLNIHDELLPFKDVIAKVIYDKNYPRIKTVVNKVGTIANEFRVPEFEILAGEDNMVT 60
           HIAHLN+HDELLPFKDVIAKVIYDKNYPRIKT+VNKVGTI+NEFRVP+FE+LAGE+ M T
Sbjct: 122 HIAHLNLHDELLPFKDVIAKVIYDKNYPRIKTIVNKVGTISNEFRVPKFEVLAGENGMET 181

Query: 61  EVKQYGATFKLDYSLVYWNSRLEHEHLRIISQFRPGETICDMFAGIGPFAIPAAQKGCIV 120
           EVKQYGA FKLDY LVYWNSRLEHEH+R+ S F+PGET+CDMFAGIGPFAIPAAQKGC V
Sbjct: 182 EVKQYGARFKLDYGLVYWNSRLEHEHMRLSSLFKPGETVCDMFAGIGPFAIPAAQKGCFV 241

Query: 121 FANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFIRQLMTAPAGEINSESDVFNLKAC 180
           +ANDLNPDSV YLKINAK NKVD+ +  +NMDAR+F   LM     E N +S        
Sbjct: 242 YANDLNPDSVRYLKINAKFNKVDDLICVHNMDARKFFSHLMAVSTCEDNLQS-------- 293

Query: 181 GNSGIQANKKTGIENVGLDVQDKEVAGNITSNSEGLQNYCRNADASVT----ATKRPSDG 236
               +  N KT         ++  V+    +NS G +   R ++AS+     A K+PS  
Sbjct: 294 ----VADNDKT---------KEAAVSRGGETNSSGEE--IRESNASINEPLGANKKPSGT 338

Query: 237 CLEENGTTNSASGRKGKTSKRMKGSELPNTKTWEHVDHIIMNLPASALKFLDAFRGLIQR 296
              ENG        +G  +KR++ + LP  K WEH+DH+IMNLPASAL+FLD+F  +IQ+
Sbjct: 339 TKTENGVGKDCKSIEGHANKRLRQTLLPIAKPWEHIDHVIMNLPASALQFLDSFSNVIQK 398

Query: 297 QYWKGSLPWIHCYCFIRANETEELIISEAESALNACIQDPIFHKVRNVAPNKAMFCLSFR 356
           +YWKG LP IHCYCFIRA+ET E II+EAE+AL   I+DP+FHKVR+VAPNKAMFCLSFR
Sbjct: 399 KYWKGPLPLIHCYCFIRASETTEFIIAEAETALKFHIEDPVFHKVRDVAPNKAMFCLSFR 458

Query: 357 LPEACF 362
           LPEAC 
Sbjct: 459 LPEACL 464

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|7572910|emb|CAB87411.1| putative protein [Arabidopsis thaliana]

 Score =  467 bits (1201), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 228/366 (62%), Positives = 272/366 (74%), Gaps = 27/366 (7%)

Query: 1   HIAHLNIHDELLPFKDVIAKVIYDKNYPRIKTVVNKVGTIANEFRVPEFEILAGEDNMVT 60
           HIAHLN+HDELLPFKDVIAKVIYDKNYPRIKT+VNKVGTI+NEFRVP+FE+LAGE+ M T
Sbjct: 101 HIAHLNLHDELLPFKDVIAKVIYDKNYPRIKTIVNKVGTISNEFRVPKFEVLAGENGMET 160

Query: 61  EVKQYGATFKLDYSLVYWNSRLEHEHLRIISQFRPGETICDMFAGIGPFAIPAAQKGCIV 120
           EVKQYGA FKLDY LVYWNSRLEHEH+R+ S F+PGET+CDMFAGIGPFAIPAAQKGC V
Sbjct: 161 EVKQYGARFKLDYGLVYWNSRLEHEHMRLSSLFKPGETVCDMFAGIGPFAIPAAQKGCFV 220

Query: 121 FANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFIRQLMTAPAGEINSESDVFNLKAC 180
           +ANDLNPDSV YLKINAK NKVD+ +  +NMDAR+F   LM     E N +S        
Sbjct: 221 YANDLNPDSVRYLKINAKFNKVDDLICVHNMDARKFFSHLMAVSTCEDNLQS-------- 272

Query: 181 GNSGIQANKKTGIENVGLDVQDKEVAGNITSNSEGLQNYCRNADASVT----ATKRPSDG 236
               +  N KT         ++  V+    +NS G +   R ++AS+     A K+PS  
Sbjct: 273 ----VADNDKT---------KEAAVSRGGETNSSGEE--IRESNASINEPLGANKKPSGT 317

Query: 237 CLEENGTTNSASGRKGKTSKRMKGSELPNTKTWEHVDHIIMNLPASALKFLDAFRGLIQR 296
              ENG        +G  +KR++ + LP  K WEH+DH+IMNLPASAL+FLD+F  +IQ+
Sbjct: 318 TKTENGVGKDCKSIEGHANKRLRQTLLPIAKPWEHIDHVIMNLPASALQFLDSFSNVIQK 377

Query: 297 QYWKGSLPWIHCYCFIRANETEELIISEAESALNACIQDPIFHKVRNVAPNKAMFCLSFR 356
           +YWKG LP IHCYCFIRA+ET E II+EAE+AL   I+DP+FHKVR+VAPNKAMFCLSFR
Sbjct: 378 KYWKGPLPLIHCYCFIRASETTEFIIAEAETALKFHIEDPVFHKVRDVAPNKAMFCLSFR 437

Query: 357 LPEACF 362
           LPEAC 
Sbjct: 438 LPEACL 443

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|222623203|gb|EEE57335.1| hypothetical protein OsJ_07451 [Oryza sativa Japonica Group]

 Score =  466 bits (1198), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 222/374 (59%), Positives = 275/374 (73%), Gaps = 14/374 (3%)

Query: 1   HIAHLNIHDELLPFKDVIAKVIYDKNYPRIKTVVNKVGTIANEFRVPEFEILAGEDNMVT 60
           H+AHLNI D+LLP+KDVIAKVIYDKNYPRI+TVVNKVGTI NEFRVP+FEILAG+++MVT
Sbjct: 132 HVAHLNIPDDLLPYKDVIAKVIYDKNYPRIQTVVNKVGTITNEFRVPQFEILAGKNDMVT 191

Query: 61  EVKQYGATFKLDYSLVYWNSRLEHEHLRIISQFRPGETICDMFAGIGPFAIPAAQKGCIV 120
           EVKQYGATFKLDY LVYWNSRLEHEH+R++S F+ G+ ICDMFAGIGPF+IPAAQKGCIV
Sbjct: 192 EVKQYGATFKLDYGLVYWNSRLEHEHIRLVSLFKKGDVICDMFAGIGPFSIPAAQKGCIV 251

Query: 121 FANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFIRQLMTAPAGEINSESDVFNLKAC 180
           +ANDLNPDSV YL+ NA++NKVD+Y+  YNMDAR F++ L+  P  E  S+S V     C
Sbjct: 252 YANDLNPDSVRYLRTNAQINKVDDYIFTYNMDARVFMQNLLEVPCSENKSDSQV--AANC 309

Query: 181 GNSGIQANKKTGIENVGLDVQDKEVAGNITSNSEGLQNYCRNADASVTATKRPSDGCLEE 240
            +  I    ++   N           GN +   E       ++    TATKR  +     
Sbjct: 310 SSEDIDPANESSTSN-----------GNHSDVQESCHKDINDSSMISTATKRRQESSNGG 358

Query: 241 NG-TTNSASGRKGKTSKRMKGSELPNTKTWEHVDHIIMNLPASALKFLDAFRGLIQRQYW 299
           +G     AS  K + +KR+KGS  P  K WEH DH++MNLPASAL+FLD F GL+Q++YW
Sbjct: 359 DGYCQEDASHTKKRNNKRVKGSGPPPVKPWEHFDHVVMNLPASALQFLDCFSGLVQKKYW 418

Query: 300 KGSLPWIHCYCFIRANETEELIISEAESALNACIQDPIFHKVRNVAPNKAMFCLSFRLPE 359
            G LPWIHCYCFIR++E+EELI+SEA++ LNA I +PIFH+VR+VAPNKAMFCLSF+LP 
Sbjct: 419 TGPLPWIHCYCFIRSSESEELILSEAQNKLNAKIAEPIFHRVRDVAPNKAMFCLSFQLPS 478

Query: 360 ACFSAKITRSVQSA 373
            C   +    +QS 
Sbjct: 479 ECLKDETEDHIQSV 492

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	380
TAIR|locus:2078386	468	AT3G56120 [Arabidopsis thalian	0.6	0.487	0.619	4.1e-72
ZFIN|ZDB-GENE-030131-5978	481	trmt5 "TRM5 tRNA methyltransfe	0.413	0.326	0.518	4.8e-62
UNIPROTKB|F1NFG8	500	TRMT5 "Uncharacterized protein	0.410	0.312	0.547	9.9e-62
MGI|MGI:1923607	501	Trmt5 "TRM5 tRNA methyltransfe	0.413	0.313	0.525	2.6e-61
RGD|1306567	499	Trmt5 "tRNA methyltransferase	0.413	0.314	0.518	4.2e-61
UNIPROTKB|Q3MHN8	497	TRMT5 "tRNA (guanine(37)-N1)-m	0.413	0.315	0.518	1.1e-60
POMBASE|SPAPB18E9.01	450	trm5 "tRNA (guanine) methyltra	0.413	0.348	0.544	6.1e-60
UNIPROTKB|F1PN08	503	TRMT5 "Uncharacterized protein	0.413	0.312	0.506	2.6e-59
UNIPROTKB|J9P199	497	TRMT5 "Uncharacterized protein	0.413	0.315	0.506	2.6e-59
UNIPROTKB|J9P7M6	495	TRMT5 "Uncharacterized protein	0.413	0.317	0.506	2.6e-59

TAIR|locus:2078386 AT3G56120 [Arabidopsis thaliana (taxid:3702)]

 Score = 729 (261.7 bits), Expect = 4.1e-72, P = 4.1e-72
 Identities = 150/242 (61%), Positives = 178/242 (73%)

Query:     1 HIAHLNIHDELLPFKDVIAKVIYDKNYPRIKTVVNKVGTIANEFRVPEFEILAGEDNMVT 60
             HIAHLN+HDELLPFKDVIAKVIYDKNYPRIKT+VNKVGTI+NEFRVP+FE+LAGE+ M T
Sbjct:   122 HIAHLNLHDELLPFKDVIAKVIYDKNYPRIKTIVNKVGTISNEFRVPKFEVLAGENGMET 181

Query:    61 EVKQYGATFKLDYSLVYWNSRLEHEHLRIISQFRPGETICDMFAGIGPFAIPAAQKGCIV 120
             EVKQYGA FKLDY LVYWNSRLEHEH+R+ S F+PGET+CDMFAGIGPFAIPAAQKGC V
Sbjct:   182 EVKQYGARFKLDYGLVYWNSRLEHEHMRLSSLFKPGETVCDMFAGIGPFAIPAAQKGCFV 241

Query:   121 FANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFIRQLMTAPAGEINSESDVFNLK-- 178
             +ANDLNPDSV YLKINAK NKVD+ +  +NMDAR+F   LM     E N +S   N K  
Sbjct:   242 YANDLNPDSVRYLKINAKFNKVDDLICVHNMDARKFFSHLMAVSTCEDNLQSVADNDKTK 301

Query:   179 -ACGNSGIQANKKTGIE----NVGLDVQ---DKEVAGNITSNSEGLQNYCRNADASVTAT 230
              A  + G + N  +G E    N  ++     +K+ +G  T    G+   C++ +    A 
Sbjct:   302 EAAVSRGGETNS-SGEEIRESNASINEPLGANKKPSGT-TKTENGVGKDCKSIEGH--AN 357

Query:   231 KR 232
             KR
Sbjct:   358 KR 359

GO:0005737 "cytoplasm" evidence=ISM

GO:0016740 "transferase activity" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0016570 "histone modification" evidence=RCA

GO:0048449 "floral organ formation" evidence=RCA

ZFIN|ZDB-GENE-030131-5978 trmt5 "TRM5 tRNA methyltransferase 5 homolog (S. cerevisiae)" [Danio rerio (taxid:7955)]

 Score = 441 (160.3 bits), Expect = 4.8e-62, Sum P(2) = 4.8e-62
 Identities = 82/158 (51%), Positives = 113/158 (71%)

Query:     1 HIAHLNIHDELLPFKDVIAKVIYDKNYPRIKTVVNKVGTIANEFRVPEFEILAGEDNMVT 60
             HIAH+N+ +  LP++ +I +VI DKN P I  VVNK  TI + +R  + E+LAGE NMV 
Sbjct:   190 HIAHMNLREHQLPYRKLIGQVIIDKN-PGITCVVNKTNTIDSTYRNFQMEVLAGESNMVA 248

Query:    61 EVKQYGATFKLDYSLVYWNSRLEHEHLRIISQFRPGETICDMFAGIGPFAIPAAQKGCIV 120
             +V++ G  ++ D+S VYWN RL  EH RI+S     +T+ D+FAG+GPFAIPAA++GC V
Sbjct:   249 KVRENGVLYEFDFSRVYWNPRLSTEHERIVSLLHRDDTVVDVFAGVGPFAIPAARRGCAV 308

Query:   121 FANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFIR 158
              ANDLNP+S  +L+ NAK+NKVD  +   N+D R+FIR
Sbjct:   309 LANDLNPESFRWLQHNAKLNKVDQKITTSNLDGRDFIR 346

GO:0016740 "transferase activity" evidence=IEA

GO:0052906 "tRNA (guanine(37)-N(1))-methyltransferase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0032259 "methylation" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0008033 "tRNA processing" evidence=IEA

GO:0005759 "mitochondrial matrix" evidence=IEA

UNIPROTKB|F1NFG8 TRMT5 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 470 (170.5 bits), Expect = 9.9e-62, Sum P(2) = 9.9e-62
 Identities = 86/157 (54%), Positives = 119/157 (75%)

Query:     1 HIAHLNIHDELLPFKDVIAKVIYDKNYPRIKTVVNKVGTIANEFRVPEFEILAGEDNMVT 60
             HIAH+N+ D  LP++ +I +VI DKN P I  VVNK   I + +R  + E+LAGE+N+VT
Sbjct:   203 HIAHVNLRDHQLPYRHLIGQVIVDKN-PGITCVVNKTSIIDSTYRNFQMEVLAGENNLVT 261

Query:    61 EVKQYGATFKLDYSLVYWNSRLEHEHLRIISQFRPGETICDMFAGIGPFAIPAAQKGCIV 120
             +VK+   T++LD++ VYWN RL  EH RI+   +PG+ + D+FAGIGPFAIPAA+K C+V
Sbjct:   262 KVKENNFTYELDFAKVYWNPRLSTEHGRIVELLKPGDVLFDVFAGIGPFAIPAARKKCVV 321

Query:   121 FANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFI 157
             FANDLNP+S H+L  N K+NKVDN ++A+NMD R+F+
Sbjct:   322 FANDLNPESYHWLLHNCKLNKVDNKIKAFNMDGRDFL 358

GO:0009019 "tRNA (guanine-N1-)-methyltransferase activity" evidence=IEA

MGI|MGI:1923607 Trmt5 "TRM5 tRNA methyltransferase 5" [Mus musculus (taxid:10090)]

 Score = 444 (161.4 bits), Expect = 2.6e-61, Sum P(2) = 2.6e-61
 Identities = 83/158 (52%), Positives = 112/158 (70%)

Query:     1 HIAHLNIHDELLPFKDVIAKVIYDKNYPRIKTVVNKVGTIANEFRVPEFEILAGEDNMVT 60
             HIAHLN+ D  LPFK +I +V+ DKN P I + VNK   I N +R  + E+L GE+NM+T
Sbjct:   198 HIAHLNLRDHQLPFKHLIGQVMVDKN-PGITSAVNKTSNIDNTYRNFQMEVLCGEENMLT 256

Query:    61 EVKQYGATFKLDYSLVYWNSRLEHEHLRIISQFRPGETICDMFAGIGPFAIPAAQKGCIV 120
             +V++   T++ D+S VYWN RL  EH RI     PG+ + D+FAG+GPFAIPAA+K C V
Sbjct:   257 KVRENNYTYEFDFSKVYWNPRLSTEHGRITELLNPGDVLFDVFAGVGPFAIPAARKNCTV 316

Query:   121 FANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFIR 158
             FANDLNP+S  +L  N K+NKVD  V+ +NMD ++FI+
Sbjct:   317 FANDLNPESHKWLLHNCKLNKVDQKVKVFNMDGKDFIQ 354

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0008033 "tRNA processing" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0009019 "tRNA (guanine-N1-)-methyltransferase activity" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0030488 "tRNA methylation" evidence=IEA

GO:0032259 "methylation" evidence=IEA

GO:0052906 "tRNA (guanine(37)-N(1))-methyltransferase activity" evidence=IEA

RGD|1306567 Trmt5 "tRNA methyltransferase 5 homolog (S. cerevisiae)" [Rattus norvegicus (taxid:10116)]

 Score = 443 (161.0 bits), Expect = 4.2e-61, Sum P(2) = 4.2e-61
 Identities = 82/158 (51%), Positives = 112/158 (70%)

Query:     1 HIAHLNIHDELLPFKDVIAKVIYDKNYPRIKTVVNKVGTIANEFRVPEFEILAGEDNMVT 60
             HIAHLN+ D  LPFK +I +V+ DKN P I + VNK   I N +R  + E+L GE+NM+T
Sbjct:   196 HIAHLNLRDHQLPFKHLIGQVMVDKN-PGITSAVNKTSNIDNTYRNFQMEVLCGEENMLT 254

Query:    61 EVKQYGATFKLDYSLVYWNSRLEHEHLRIISQFRPGETICDMFAGIGPFAIPAAQKGCIV 120
             +V++   T++ D+S VYWN RL  EH RI     PG+ + D+FAG+GPFAIPAA+K C V
Sbjct:   255 KVRENNYTYEFDFSKVYWNPRLSTEHGRITELLNPGDVLFDVFAGVGPFAIPAARKNCTV 314

Query:   121 FANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFIR 158
             FANDLNP+S  +L  N K+NKVD  V+ +NMD ++F++
Sbjct:   315 FANDLNPESHRWLLHNCKLNKVDQKVKVFNMDGKDFLQ 352

GO:0009019 "tRNA (guanine-N1-)-methyltransferase activity" evidence=IEA

UNIPROTKB|Q3MHN8 TRMT5 "tRNA (guanine(37)-N1)-methyltransferase" [Bos taurus (taxid:9913)]

 Score = 448 (162.8 bits), Expect = 1.1e-60, Sum P(2) = 1.1e-60
 Identities = 82/158 (51%), Positives = 115/158 (72%)

Query:     1 HIAHLNIHDELLPFKDVIAKVIYDKNYPRIKTVVNKVGTIANEFRVPEFEILAGEDNMVT 60
             HIAHLN+ D  LP+K +I +V+ DKN P I + VNK+  I N +R  E E+L+GE+NM+T
Sbjct:   203 HIAHLNLRDHQLPYKHLIGQVMIDKN-PGITSAVNKINNIDNTYRNFEMEVLSGEENMMT 261

Query:    61 EVKQYGATFKLDYSLVYWNSRLEHEHLRIISQFRPGETICDMFAGIGPFAIPAAQKGCIV 120
             +V++   T++ D+S VYWN RL  EH RI    +PG+ + D+FAG+GPFAIPAA+K C V
Sbjct:   262 KVRENNYTYEFDFSKVYWNPRLSTEHSRITELLKPGDVLFDVFAGVGPFAIPAAKKKCTV 321

Query:   121 FANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFIR 158
             FANDLNP+S  +L  N K+NKVD  V+ +N+D R+F++
Sbjct:   322 FANDLNPESHKWLLHNCKLNKVDQKVKVFNLDGRDFLQ 359

GO:0005759 "mitochondrial matrix" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0052906 "tRNA (guanine(37)-N(1))-methyltransferase activity" evidence=IEA

POMBASE|SPAPB18E9.01 trm5 "tRNA (guanine) methyltransferase Trm5 (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 456 (165.6 bits), Expect = 6.1e-60, Sum P(2) = 6.1e-60
 Identities = 86/158 (54%), Positives = 112/158 (70%)

Query:     1 HIAHLNIHDELLPFKDVIAKVIYDKNYPRIKTVVNKVGTIANEFRVPEFEILAGEDNMVT 60
             HIAH+N+ +E LP+K +I KVI DKN P I+TVVNK  TI  +FR  + E+LAG+D+ + 
Sbjct:   147 HIAHMNLREEWLPYKYIIGKVILDKN-PSIETVVNKTDTIDTKFRTFQMEVLAGKDDFIV 205

Query:    61 EVKQYGATFKLDYSLVYWNSRLEHEHLRIISQFRPGETICDMFAGIGPFAIPAAQKGCIV 120
                +    F+ D+S VYWNSRL  EH R+I QF+PG+ +CD+ AG+GPFA PA +K  IV
Sbjct:   206 TQSESNCKFRFDFSKVYWNSRLSTEHDRLIQQFQPGDAVCDVMAGVGPFACPAGKKNVIV 265

Query:   121 FANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFIR 158
             FANDLNP S   L  N  +NKV N+V+A+N D REFIR
Sbjct:   266 FANDLNPYSYESLVENIFLNKVANFVKAFNQDGREFIR 303

GO:0005634 "nucleus" evidence=ISO;IDA

GO:0005737 "cytoplasm" evidence=ISO

GO:0005759 "mitochondrial matrix" evidence=IEA

GO:0016423 "tRNA (guanine) methyltransferase activity" evidence=ISO

GO:0030488 "tRNA methylation" evidence=ISO

GO:0052906 "tRNA (guanine(37)-N(1))-methyltransferase activity" evidence=IEA

UNIPROTKB|F1PN08 TRMT5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 443 (161.0 bits), Expect = 2.6e-59, Sum P(2) = 2.6e-59
 Identities = 80/158 (50%), Positives = 114/158 (72%)

Query:     1 HIAHLNIHDELLPFKDVIAKVIYDKNYPRIKTVVNKVGTIANEFRVPEFEILAGEDNMVT 60
             HIAHLN+ D  LPFK +I +V+ DKN P I + VNK+  I N +R  + E+L+GE+NM+T
Sbjct:   203 HIAHLNLRDHQLPFKHLIGQVMIDKN-PGITSAVNKINNIDNTYRNFQMEVLSGEENMMT 261

Query:    61 EVKQYGATFKLDYSLVYWNSRLEHEHLRIISQFRPGETICDMFAGIGPFAIPAAQKGCIV 120
             +V++   T++ D+S VYWN RL  EH RI    +PG+ + D+FAG+GPFAIP A+K C V
Sbjct:   262 KVRENSYTYEFDFSKVYWNPRLSTEHSRITELLKPGDVLFDVFAGVGPFAIPVAKKNCTV 321

Query:   121 FANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFIR 158
             FANDLNP+S  +L  N K+NKVD  V+ +N+D ++F++
Sbjct:   322 FANDLNPESHKWLLHNCKLNKVDQKVKVFNLDGKDFLQ 359

GO:0009019 "tRNA (guanine-N1-)-methyltransferase activity" evidence=IEA

UNIPROTKB|J9P199 TRMT5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 443 (161.0 bits), Expect = 2.6e-59, Sum P(2) = 2.6e-59
 Identities = 80/158 (50%), Positives = 114/158 (72%)

Query:     1 HIAHLNIHDELLPFKDVIAKVIYDKNYPRIKTVVNKVGTIANEFRVPEFEILAGEDNMVT 60
             HIAHLN+ D  LPFK +I +V+ DKN P I + VNK+  I N +R  + E+L+GE+NM+T
Sbjct:   203 HIAHLNLRDHQLPFKHLIGQVMIDKN-PGITSAVNKINNIDNTYRNFQMEVLSGEENMMT 261

Query:    61 EVKQYGATFKLDYSLVYWNSRLEHEHLRIISQFRPGETICDMFAGIGPFAIPAAQKGCIV 120
             +V++   T++ D+S VYWN RL  EH RI    +PG+ + D+FAG+GPFAIP A+K C V
Sbjct:   262 KVRENSYTYEFDFSKVYWNPRLSTEHSRITELLKPGDVLFDVFAGVGPFAIPVAKKNCTV 321

Query:   121 FANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFIR 158
             FANDLNP+S  +L  N K+NKVD  V+ +N+D ++F++
Sbjct:   322 FANDLNPESHKWLLHNCKLNKVDQKVKVFNLDGKDFLQ 359

GO:0009019 "tRNA (guanine-N1-)-methyltransferase activity" evidence=IEA

UNIPROTKB|J9P7M6 TRMT5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 443 (161.0 bits), Expect = 2.6e-59, Sum P(2) = 2.6e-59
 Identities = 80/158 (50%), Positives = 114/158 (72%)

Query:     1 HIAHLNIHDELLPFKDVIAKVIYDKNYPRIKTVVNKVGTIANEFRVPEFEILAGEDNMVT 60
             HIAHLN+ D  LPFK +I +V+ DKN P I + VNK+  I N +R  + E+L+GE+NM+T
Sbjct:   203 HIAHLNLRDHQLPFKHLIGQVMIDKN-PGITSAVNKINNIDNTYRNFQMEVLSGEENMMT 261

Query:    61 EVKQYGATFKLDYSLVYWNSRLEHEHLRIISQFRPGETICDMFAGIGPFAIPAAQKGCIV 120
             +V++   T++ D+S VYWN RL  EH RI    +PG+ + D+FAG+GPFAIP A+K C V
Sbjct:   262 KVRENSYTYEFDFSKVYWNPRLSTEHSRITELLKPGDVLFDVFAGVGPFAIPVAKKNCTV 321

Query:   121 FANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFIR 158
             FANDLNP+S  +L  N K+NKVD  V+ +N+D ++F++
Sbjct:   322 FANDLNPESHKWLLHNCKLNKVDQKVKVFNLDGKDFLQ 359

GO:0009019 "tRNA (guanine-N1-)-methyltransferase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q93YU6	TRM51_ARATH	2, ., 1, ., 1, ., 2, 2, 8	0.6229	0.8921	0.7243	yes	no
F6HH45	TRM52_VITVI	2, ., 1, ., 1, ., 2, 2, 8	0.6919	0.9868	0.7352	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.1.1	LOW CONFIDENCE prediction!
3rd Layer	2.1.1.31	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	380
pfam02475	199	pfam02475, Met_10, Met-10+ like-protein	1e-66
COG2520	341	COG2520, COG2520, Predicted methyltransferase [Gen	1e-62
COG2520	341	COG2520, COG2520, Predicted methyltransferase [Gen	6e-09
COG2265	432	COG2265, TrmA, SAM-dependent methyltransferases re	9e-09
PRK04338	382	PRK04338, PRK04338, N(2),N(2)-dimethylguanosine tR	6e-06
COG1867	380	COG1867, TRM1, N2,N2-dimethylguanosine tRNA methyl	9e-06
PRK14968	188	PRK14968, PRK14968, putative methyltransferase; Pr	1e-04
TIGR00479	431	TIGR00479, rumA, 23S rRNA (uracil-5-)-methyltransf	4e-04
cd02440	107	cd02440, AdoMet_MTases, S-adenosylmethionine-depen	0.002
COG2227	243	COG2227, UbiG, 2-polyprenyl-3-methyl-5-hydroxy-6-m	0.002
pfam12847	104	pfam12847, Methyltransf_18, Methyltransferase doma	0.003
pfam02005	375	pfam02005, TRM, N2,N2-dimethylguanosine tRNA methy	0.003
TIGR00308	374	TIGR00308, TRM1, tRNA(guanine-26,N2-N2) methyltran	0.003

>gnl|CDD|202251 pfam02475, Met_10, Met-10+ like-protein

 Score =  209 bits (533), Expect = 1e-66
 Identities = 74/177 (41%), Positives = 101/177 (57%), Gaps = 10/177 (5%)

Query: 1   HIAHLNIHDELLPFKDVIAKVIYDKNYPRIKTVVNKVGTIANEFRVPEFEILAGEDNMVT 60
            I  LNI +EL+P+K VI + I  K   ++K V+ KVG +  EFR    E++AGED   T
Sbjct: 8   DIVILNIPEELMPYKKVIGEAILKKT--KVKAVLRKVGIVTGEFRTRRLEVIAGEDRTET 65

Query: 61  EVKQYGATFKLDYSLVYWNSRLEHEHLRIISQFRPGETICDMFAGIGPFAIPAAQ--KGC 118
             K+ G  FK+D S VY++ RL  E  RI    + GE + DMFAGIGPF+IP A+  K  
Sbjct: 66  IHKENGCRFKIDVSKVYFSPRLIGERERIAKLVKEGEVVVDMFAGIGPFSIPIAKHSKAK 125

Query: 119 IVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFI------RQLMTAPAGEIN 169
            V+A +LNP++V YLK N K+NKV+  +     D R+ I      R +M  P     
Sbjct: 126 RVYAVELNPEAVKYLKENIKLNKVEGVISPILGDVRDVILEGVADRVIMNLPKSAHE 182

The methionine-10 mutant allele of N. crassa codes for a protein of unknown function. However, homologous proteins have been found in yeast suggesting this protein may be involved in methionine biosynthesis, transport and/or utilisation. Length = 199

>gnl|CDD|225318 COG2520, COG2520, Predicted methyltransferase [General function prediction only]

 Score =  203 bits (519), Expect = 1e-62
 Identities = 75/164 (45%), Positives = 103/164 (62%), Gaps = 2/164 (1%)

Query: 1   HIAHLNIHDELLPFKDVIAKVIYDKNYPRIKTVVNKVGTIANEFRVPEFEILAGEDNMVT 60
            IA L+I DEL P+K  IA+ I   +  ++K V+ K G +A EFRVP  E+LAGE    T
Sbjct: 95  DIAILSIPDELEPYKREIAEAILRVH-GKVKAVLLKEGPVAGEFRVPRLEVLAGERRTET 153

Query: 61  EVKQYGATFKLDYSLVYWNSRLEHEHLRIISQFRPGETICDMFAGIGPFAIPAAQKGCI- 119
             ++ G  FK+D + VY++ RL  E  R+    + GET+ DMFAG+GPF+IP A+KG   
Sbjct: 154 IHRENGCRFKVDVAKVYFSPRLSTERARVAELVKEGETVLDMFAGVGPFSIPIAKKGRPK 213

Query: 120 VFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFIRQLMTA 163
           V+A D+NPD+V YLK N ++NKV+  V     DARE   +L  A
Sbjct: 214 VYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPELGVA 257

Length = 341

>gnl|CDD|225318 COG2520, COG2520, Predicted methyltransferase [General function prediction only]

 Score = 56.6 bits (137), Expect = 6e-09
 Identities = 23/87 (26%), Positives = 34/87 (39%), Gaps = 9/87 (10%)

Query: 273 DHIIMNLPASALKFLDAFRGLIQRQYWKGSLPWIHCYCFIRANETEELIISEAESALNAC 332
           D IIM LP SA +FL     L+      G    IH Y F+  ++ EE      +SA    
Sbjct: 258 DRIIMGLPKSAHEFLPLALELL----KDG--GIIHYYEFVPEDDIEERPEKRIKSAARKG 311

Query: 333 IQDPI---FHKVRNVAPNKAMFCLSFR 356
                     +V++ +P      +  R
Sbjct: 312 GYKVEVLKVRRVKSYSPGVYHVVVDLR 338

Length = 341

>gnl|CDD|225174 COG2265, TrmA, SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]

 Score = 56.6 bits (137), Expect = 9e-09
 Identities = 21/64 (32%), Positives = 35/64 (54%), Gaps = 1/64 (1%)

Query: 94  RPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDA 153
             GE + D++ G+G F +P A++   V   +++P++V   + NA  N +DN V     DA
Sbjct: 292 AGGERVLDLYCGVGTFGLPLAKRVKKVHGVEISPEAVEAAQENAAANGIDN-VEFIAGDA 350

Query: 154 REFI 157
            EF 
Sbjct: 351 EEFT 354

Length = 432

>gnl|CDD|235286 PRK04338, PRK04338, N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional

 Score = 47.6 bits (114), Expect = 6e-06
 Identities = 20/76 (26%), Positives = 38/76 (50%), Gaps = 6/76 (7%)

Query: 89  IISQFRPGE---TICDMFAGIGPFAIPAAQKGCI--VFANDLNPDSVHYLKINAKVNKVD 143
           ++  F P     ++ D  +  G   I  A +  +  V  ND+NPD+V  +K N ++N ++
Sbjct: 48  VLRAFGPKLPRESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLE 107

Query: 144 NYVRAYNMDAREFIRQ 159
           N  + +N DA   + +
Sbjct: 108 N-EKVFNKDANALLHE 122

Length = 382

>gnl|CDD|224780 COG1867, TRM1, N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]

 Score = 47.0 bits (112), Expect = 9e-06
 Identities = 16/69 (23%), Positives = 29/69 (42%), Gaps = 3/69 (4%)

Query: 94  RPGETICDMFAGIGPFAIPAAQ--KGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNM 151
              + + D  +  G   I  A       V  ND++P +V  +K N ++N  ++     N 
Sbjct: 51  LLPKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSGEDAEV-INK 109

Query: 152 DAREFIRQL 160
           DA   + +L
Sbjct: 110 DANALLHEL 118

Length = 380

>gnl|CDD|237872 PRK14968, PRK14968, putative methyltransferase; Provisional

 Score = 42.6 bits (101), Expect = 1e-04
 Identities = 19/51 (37%), Positives = 29/51 (56%)

Query: 94  RPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKVDN 144
           + G+ + ++  G G  AI AA+ G  V   D+NP +V   K NAK+N + N
Sbjct: 22  KKGDRVLEVGTGSGIVAIVAAKNGKKVVGVDINPYAVECAKCNAKLNNIRN 72

Length = 188

>gnl|CDD|129571 TIGR00479, rumA, 23S rRNA (uracil-5-)-methyltransferase RumA

 Score = 41.7 bits (98), Expect = 4e-04
 Identities = 15/53 (28%), Positives = 30/53 (56%)

Query: 92  QFRPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKVDN 144
           + +  E + D + G+G F +P A++   V   ++ P+SV   + NA++N + N
Sbjct: 289 ELQGEELVVDAYCGVGTFTLPLAKQAKSVVGIEVVPESVEKAQQNAELNGIAN 341

This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [Protein synthesis, tRNA and rRNA base modification]. Length = 431

>gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

 Score = 37.0 bits (86), Expect = 0.002
 Identities = 14/60 (23%), Positives = 24/60 (40%), Gaps = 2/60 (3%)

Query: 98  TICDMFAGIGPFAIPAAQ-KGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREF 156
            + D+  G G  A+  A   G  V   D++P ++   +  A    + + V     DA E 
Sbjct: 1   RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAA-ALLADNVEVLKGDAEEL 59

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). Length = 107

>gnl|CDD|225137 COG2227, UbiG, 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

 Score = 38.9 bits (91), Expect = 0.002
 Identities = 14/53 (26%), Positives = 25/53 (47%), Gaps = 1/53 (1%)

Query: 94  RPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKVD-NY 145
            PG  + D+  G G  + P A+ G  V   D +   +   K++A  + V+ +Y
Sbjct: 58  LPGLRVLDVGCGGGILSEPLARLGASVTGIDASEKPIEVAKLHALESGVNIDY 110

Length = 243

>gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain

 Score = 36.9 bits (86), Expect = 0.003
 Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 3/63 (4%)

Query: 95  PGETICDMFAGIGPFAIPAAQ--KGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMD 152
           PG  + D+  G G  AI  A+   G  V   DL+P+ +   + NAK+      +     D
Sbjct: 1   PGARVLDIGCGTGSLAIELARLFPGARVTGVDLSPEMLELARENAKLALGPR-ITFVQGD 59

Query: 153 ARE 155
           A +
Sbjct: 60  APD 62

Protein in this family function as methyltransferases. Length = 104

>gnl|CDD|216840 pfam02005, TRM, N2,N2-dimethylguanosine tRNA methyltransferase

 Score = 38.9 bits (91), Expect = 0.003
 Identities = 17/39 (43%), Positives = 25/39 (64%)

Query: 120 VFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFIR 158
           VFAND++P +V  +K N K+N+V+N V     DA   +R
Sbjct: 77  VFANDISPKAVELIKENVKLNEVENIVVINGDDANMLMR 115

This enzyme EC:2.1.1.32 used S-AdoMet to methylate tRNA. The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs. The enzyme is found in both eukaryotes and archaebacteria. Length = 375

>gnl|CDD|232913 TIGR00308, TRM1, tRNA(guanine-26,N2-N2) methyltransferase

 Score = 38.7 bits (90), Expect = 0.003
 Identities = 23/64 (35%), Positives = 31/64 (48%), Gaps = 4/64 (6%)

Query: 99  ICDMFAGIGPFAIPAAQK---GCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDARE 155
           I D  +  G  AI  A +      VFAND+NP +V  +K N + N V+N     N DA  
Sbjct: 48  IADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIE-VPNEDAAN 106

Query: 156 FIRQ 159
            +R 
Sbjct: 107 VLRY 110

This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes [Protein synthesis, tRNA and rRNA base modification]. Length = 374

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	380
KOG2078	495	consensus tRNA modification enzyme [RNA processing	100.0
COG2520	341	Predicted methyltransferase [General function pred	100.0
PF02475	200	Met_10: Met-10+ like-protein; InterPro: IPR003402	100.0
PRK15128	396	23S rRNA m(5)C1962 methyltransferase; Provisional	99.82
COG1092	393	Predicted SAM-dependent methyltransferases [Genera	99.78
TIGR00479	431	rumA 23S rRNA (uracil-5-)-methyltransferase RumA.	99.76
PF10672	286	Methyltrans_SAM: S-adenosylmethionine-dependent me	99.76
COG2265	432	TrmA SAM-dependent methyltransferases related to t	99.72
TIGR02085	374	meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer	99.71
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	99.69
PRK03522	315	rumB 23S rRNA methyluridine methyltransferase; Rev	99.69
KOG2187	534	consensus tRNA uracil-5-methyltransferase and rela	99.63
PRK05031	362	tRNA (uracil-5-)-methyltransferase; Validated	99.58
PRK13168	443	rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe	99.51
PF05958	352	tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas	99.47
KOG1227	351	consensus Putative methyltransferase [General func	99.46
TIGR02143	353	trmA_only tRNA (uracil-5-)-methyltransferase. This	99.43
PRK04338	382	N(2),N(2)-dimethylguanosine tRNA methyltransferase	99.39
TIGR00308	374	TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi	99.39
PF13659	117	Methyltransf_26: Methyltransferase domain; PDB: 3G	99.35
PRK10909	199	rsmD 16S rRNA m(2)G966-methyltransferase; Provisio	99.32
COG2263	198	Predicted RNA methylase [Translation, ribosomal st	99.25
COG4123	248	Predicted O-methyltransferase [General function pr	99.25
TIGR00095	189	RNA methyltransferase, RsmD family. This model rep	99.22
PF05175	170	MTS: Methyltransferase small domain; InterPro: IPR	99.17
TIGR03533	284	L3_gln_methyl protein-(glutamine-N5) methyltransfe	99.12
PRK14966	423	unknown domain/N5-glutamine S-adenosyl-L-methionin	99.12
PF03602	183	Cons_hypoth95: Conserved hypothetical protein 95;	99.12
COG0742	187	N6-adenine-specific methylase [DNA replication, re	99.11
TIGR03704	251	PrmC_rel_meth putative protein-(glutamine-N5) meth	99.11
COG2890	280	HemK Methylase of polypeptide chain release factor	99.09
TIGR00536	284	hemK_fam HemK family putative methylases. The gene	99.05
PRK11805	307	N5-glutamine S-adenosyl-L-methionine-dependent met	99.05
PF06325	295	PrmA: Ribosomal protein L11 methyltransferase (Prm	99.03
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	99.01
TIGR00446	264	nop2p NOL1/NOP2/sun family putative RNA methylase.	98.99
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	98.99
PRK14967	223	putative methyltransferase; Provisional	98.99
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	98.96
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	98.96
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	98.95
TIGR00537	179	hemK_rel_arch HemK-related putative methylase. The	98.94
PTZ00338	294	dimethyladenosine transferase-like protein; Provis	98.88
PRK07402	196	precorrin-6B methylase; Provisional	98.88
TIGR03534	251	RF_mod_PrmC protein-(glutamine-N5) methyltransfera	98.88
TIGR01177	329	conserved hypothetical protein TIGR01177. This fam	98.85
COG2264	300	PrmA Ribosomal protein L11 methylase [Translation,	98.84
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	98.83
TIGR00091	194	tRNA (guanine-N(7)-)-methyltransferase. In E. coli	98.82
PRK08287	187	cobalt-precorrin-6Y C(15)-methyltransferase; Valid	98.82
PRK14902	444	16S rRNA methyltransferase B; Provisional	98.82
TIGR00138	181	gidB 16S rRNA methyltransferase GidB. GidB (glucos	98.81
COG2813	300	RsmC 16S RNA G1207 methylase RsmC [Translation, ri	98.81
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	98.81
PF09445	163	Methyltransf_15: RNA cap guanine-N2 methyltransfer	98.81
PF01170	179	UPF0020: Putative RNA methylase family UPF0020; In	98.78
PRK14968	188	putative methyltransferase; Provisional	98.78
PRK14896	258	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	98.76
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	98.75
PLN02672	1082	methionine S-methyltransferase	98.74
smart00650	169	rADc Ribosomal RNA adenine dimethylases.	98.74
PRK09489	342	rsmC 16S ribosomal RNA m2G1207 methyltransferase;	98.74
PRK00121	202	trmB tRNA (guanine-N(7)-)-methyltransferase; Revie	98.73
PRK14904	445	16S rRNA methyltransferase B; Provisional	98.73
COG2242	187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	98.73
PRK09328	275	N5-glutamine S-adenosyl-L-methionine-dependent met	98.73
COG2519	256	GCD14 tRNA(1-methyladenosine) methyltransferase an	98.71
COG0116	381	Predicted N6-adenine-specific DNA methylase [DNA r	98.71
PF13847	152	Methyltransf_31: Methyltransferase domain; PDB: 3T	98.69
PRK11036	255	putative S-adenosyl-L-methionine-dependent methylt	98.69
KOG2730	263	consensus Methylase [General function prediction o	98.69
PRK14901	434	16S rRNA methyltransferase B; Provisional	98.68
PRK14903	431	16S rRNA methyltransferase B; Provisional	98.68
PRK12335	287	tellurite resistance protein TehB; Provisional	98.68
PRK14121	390	tRNA (guanine-N(7)-)-methyltransferase; Provisiona	98.68
PRK10901	427	16S rRNA methyltransferase B; Provisional	98.67
PRK11727	321	23S rRNA mA1618 methyltransferase; Provisional	98.63
PHA03412	241	putative methyltransferase; Provisional	98.62
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	98.6
TIGR00563	426	rsmB ribosomal RNA small subunit methyltransferase	98.58
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	98.58
TIGR02021	219	BchM-ChlM magnesium protoporphyrin O-methyltransfe	98.57
PLN02781	234	Probable caffeoyl-CoA O-methyltransferase	98.56
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	98.55
PRK11207	197	tellurite resistance protein TehB; Provisional	98.54
PHA03411	279	putative methyltransferase; Provisional	98.54
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	98.52
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	98.5
PF08704	247	GCD14: tRNA methyltransferase complex GCD14 subuni	98.47
PRK00274	272	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	98.47
TIGR00477	195	tehB tellurite resistance protein TehB. Part of a	98.46
PLN02396	322	hexaprenyldihydroxybenzoate methyltransferase	98.45
PRK04266	226	fibrillarin; Provisional	98.44
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	98.43
PRK15451	247	tRNA cmo(5)U34 methyltransferase; Provisional	98.42
PLN02476	278	O-methyltransferase	98.42
PLN02244	340	tocopherol O-methyltransferase	98.4
COG0030	259	KsgA Dimethyladenosine transferase (rRNA methylati	98.38
PRK00312	212	pcm protein-L-isoaspartate O-methyltransferase; Re	98.38
COG4076	252	Predicted RNA methylase [General function predicti	98.38
TIGR02752	231	MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me	98.37
PRK04457	262	spermidine synthase; Provisional	98.37
PF01596	205	Methyltransf_3: O-methyltransferase; InterPro: IPR	98.36
COG1867	380	TRM1 N2,N2-dimethylguanosine tRNA methyltransferas	98.36
TIGR03840	213	TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d	98.35
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	98.34
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	98.34
COG2226	238	UbiE Methylase involved in ubiquinone/menaquinone	98.34
PRK07580	230	Mg-protoporphyrin IX methyl transferase; Validated	98.32
KOG2904	328	consensus Predicted methyltransferase [General fun	98.3
TIGR00740	239	methyltransferase, putative. A simple BLAST search	98.3
PRK13255	218	thiopurine S-methyltransferase; Reviewed	98.29
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	98.28
KOG1499	346	consensus Protein arginine N-methyltransferase PRM	98.27
PF07021	193	MetW: Methionine biosynthesis protein MetW; InterP	98.27
PF01209	233	Ubie_methyltran: ubiE/COQ5 methyltransferase famil	98.25
KOG3420	185	consensus Predicted RNA methylase [Translation, ri	98.23
TIGR00755	253	ksgA dimethyladenosine transferase. Alternate name	98.23
PF02384	311	N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T	98.22
PRK10742	250	putative methyltransferase; Provisional	98.21
PF05185	448	PRMT5: PRMT5 arginine-N-methyltransferase; InterPr	98.2
COG1041	347	Predicted DNA modification methylase [DNA replicat	98.2
PF02390	195	Methyltransf_4: Putative methyltransferase ; Inter	98.2
PRK00811	283	spermidine synthase; Provisional	98.2
PF01135	209	PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl	98.19
PF03848	192	TehB: Tellurite resistance protein TehB; InterPro:	98.19
PTZ00146	293	fibrillarin; Provisional	98.19
KOG1270	282	consensus Methyltransferases [Coenzyme transport a	98.16
PRK11188	209	rrmJ 23S rRNA methyltransferase J; Provisional	98.15
PLN02585	315	magnesium protoporphyrin IX methyltransferase	98.14
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	98.14
COG2521	287	Predicted archaeal methyltransferase [General func	98.13
KOG0820	315	consensus Ribosomal RNA adenine dimethylase [RNA p	98.12
PF13649	101	Methyltransf_25: Methyltransferase domain; PDB: 3B	98.12
PF02005	377	TRM: N2,N2-dimethylguanosine tRNA methyltransferas	98.11
PRK10258	251	biotin biosynthesis protein BioC; Provisional	98.1
cd02440	107	AdoMet_MTases S-adenosylmethionine-dependent methy	98.1
PLN02233	261	ubiquinone biosynthesis methyltransferase	98.06
TIGR01444	143	fkbM_fam methyltransferase, FkbM family. Members o	98.05
TIGR03438	301	probable methyltransferase. This model represents	98.05
PRK03612	521	spermidine synthase; Provisional	98.04
PRK00216	239	ubiE ubiquinone/menaquinone biosynthesis methyltra	98.04
PRK01581	374	speE spermidine synthase; Validated	98.02
TIGR03587	204	Pse_Me-ase pseudaminic acid biosynthesis-associate	98.01
TIGR02716	306	C20_methyl_CrtF C-20 methyltransferase BchU. Membe	98.0
smart00828	224	PKS_MT Methyltransferase in polyketide synthase (P	98.0
PLN02336	475	phosphoethanolamine N-methyltransferase	97.99
PLN03075	296	nicotianamine synthase; Provisional	97.99
PRK00050	296	16S rRNA m(4)C1402 methyltranserfase; Provisional	97.92
TIGR00417	270	speE spermidine synthase. the SpeE subunit of sper	97.92
PRK14103	255	trans-aconitate 2-methyltransferase; Provisional	97.91
PLN02366	308	spermidine synthase	97.91
PRK01683	258	trans-aconitate 2-methyltransferase; Provisional	97.91
PTZ00098	263	phosphoethanolamine N-methyltransferase; Provision	97.9
TIGR01983	224	UbiG ubiquinone biosynthesis O-methyltransferase.	97.89
COG0220	227	Predicted S-adenosylmethionine-dependent methyltra	97.89
PRK15068	322	tRNA mo(5)U34 methyltransferase; Provisional	97.86
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	97.86
KOG1500	517	consensus Protein arginine N-methyltransferase CAR	97.85
PRK05134	233	bifunctional 3-demethylubiquinone-9 3-methyltransf	97.84
PF10294	173	Methyltransf_16: Putative methyltransferase; Inter	97.83
PLN02589	247	caffeoyl-CoA O-methyltransferase	97.82
PF08241	95	Methyltransf_11: Methyltransferase domain; InterPr	97.82
PRK11933	470	yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF;	97.73
PRK08317	241	hypothetical protein; Provisional	97.72
PRK04148	134	hypothetical protein; Provisional	97.71
TIGR00478	228	tly hemolysin TlyA family protein. Hemolysins are	97.7
TIGR01934	223	MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis	97.7
PLN02823	336	spermine synthase	97.67
TIGR00452	314	methyltransferase, putative. Known examples to dat	97.66
PF00398	262	RrnaAD: Ribosomal RNA adenine dimethylase; InterPr	97.65
PRK05785	226	hypothetical protein; Provisional	97.63
PRK06922	677	hypothetical protein; Provisional	97.61
PF04816	205	DUF633: Family of unknown function (DUF633) ; Inte	97.61
KOG1271	227	consensus Methyltransferases [General function pre	97.6
KOG3191	209	consensus Predicted N6-DNA-methyltransferase [Tran	97.59
TIGR02987	524	met_A_Alw26 type II restriction m6 adenine DNA met	97.59
TIGR02081	194	metW methionine biosynthesis protein MetW. This pr	97.56
PRK06202	232	hypothetical protein; Provisional	97.56
COG4122	219	Predicted O-methyltransferase [General function pr	97.52
PF13489	161	Methyltransf_23: Methyltransferase domain; PDB: 3J	97.52
PLN02336	475	phosphoethanolamine N-methyltransferase	97.52
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	97.51
PLN02490	340	MPBQ/MSBQ methyltransferase	97.43
TIGR02072	240	BioC biotin biosynthesis protein BioC. This enzyme	97.41
COG3897	218	Predicted methyltransferase [General function pred	97.4
PF01189	283	Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR	97.38
PF01564	246	Spermine_synth: Spermine/spermidine synthase; Inte	97.34
TIGR00438	188	rrmJ cell division protein FtsJ.	97.32
PF01555	231	N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th	97.32
PRK11088	272	rrmA 23S rRNA methyltransferase A; Provisional	97.25
PRK13256	226	thiopurine S-methyltransferase; Reviewed	97.17
PF05401	201	NodS: Nodulation protein S (NodS); InterPro: IPR00	97.16
COG4106	257	Tam Trans-aconitate methyltransferase [General fun	97.13
PF13679	141	Methyltransf_32: Methyltransferase domain	97.11
KOG1540	296	consensus Ubiquinone biosynthesis methyltransferas	97.11
smart00138	264	MeTrc Methyltransferase, chemotaxis proteins. Meth	97.1
PF05724	218	TPMT: Thiopurine S-methyltransferase (TPMT); Inter	97.07
KOG2915	314	consensus tRNA(1-methyladenosine) methyltransferas	97.06
PRK11524	284	putative methyltransferase; Provisional	97.05
PHA01634	156	hypothetical protein	97.03
KOG1663	237	consensus O-methyltransferase [Secondary metabolit	97.0
PRK13699	227	putative methylase; Provisional	96.93
PF08242	99	Methyltransf_12: Methyltransferase domain; InterPr	96.92
COG0144	355	Sun tRNA and rRNA cytosine-C5-methylases [Translat	96.91
COG2384	226	Predicted SAM-dependent methyltransferase [General	96.77
KOG1501	636	consensus Arginine N-methyltransferase [General fu	96.71
TIGR00006	305	S-adenosyl-methyltransferase MraW. Genetics paper	96.69
PF05971	299	Methyltransf_10: Protein of unknown function (DUF8	96.61
COG4976	287	Predicted methyltransferase (contains TPR repeat)	96.59
PF02527	184	GidB: rRNA small subunit methyltransferase G; Inte	96.45
PF00145	335	DNA_methylase: C-5 cytosine-specific DNA methylase	96.44
PF08003	315	Methyltransf_9: Protein of unknown function (DUF16	96.37
PF11599	246	AviRa: RRNA methyltransferase AviRa; InterPro: IPR	96.36
KOG2899	288	consensus Predicted methyltransferase [General fun	96.31
KOG1541	270	consensus Predicted protein carboxyl methylase [Ge	96.27
KOG1253	525	consensus tRNA methyltransferase [Translation, rib	96.25
COG0421	282	SpeE Spermidine synthase [Amino acid transport and	96.1
COG0357	215	GidB Predicted S-adenosylmethionine-dependent meth	96.1
cd00315	275	Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth	96.04
PF08123	205	DOT1: Histone methylation protein DOT1 ; InterPro:	95.95
COG4262	508	Predicted spermidine synthase with an N-terminal m	95.77
PRK11760	357	putative 23S rRNA C2498 ribose 2'-O-ribose methylt	95.69
KOG3010	261	consensus Methyltransferase [General function pred	95.59
KOG4058	199	consensus Uncharacterized conserved protein [Funct	95.53
PF00891	241	Methyltransf_2: O-methyltransferase; InterPro: IPR	95.42
COG3963	194	Phospholipid N-methyltransferase [Lipid metabolism	95.23
PF03291	331	Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971	95.09
PF01728	181	FtsJ: FtsJ-like methyltransferase; InterPro: IPR00	95.08
PF01795	310	Methyltransf_5: MraW methylase family; InterPro: I	94.98
COG1189	245	Predicted rRNA methylase [Translation, ribosomal s	94.67
COG0270	328	Dcm Site-specific DNA methylase [DNA replication,	94.64
PF12147	311	Methyltransf_20: Putative methyltransferase; Inter	94.6
COG0286	489	HsdM Type I restriction-modification system methyl	94.53
TIGR00675	315	dcm DNA-methyltransferase (dcm). All proteins in t	94.51
PRK10458	467	DNA cytosine methylase; Provisional	94.5
PF07091	251	FmrO: Ribosomal RNA methyltransferase (FmrO); PDB:	94.32
PF04445	234	SAM_MT: Putative SAM-dependent methyltransferase;	94.3
KOG2671	421	consensus Putative RNA methylase [Replication, rec	94.16
KOG1661	237	consensus Protein-L-isoaspartate(D-aspartate) O-me	94.15
TIGR03439	319	methyl_EasF probable methyltransferase domain, Eas	93.93
PF02086	260	MethyltransfD12: D12 class N6 adenine-specific DNA	93.86
KOG1122	460	consensus tRNA and rRNA cytosine-C5-methylase (nuc	93.75
KOG2361	264	consensus Predicted methyltransferase [General fun	93.61
KOG4300	252	consensus Predicted methyltransferase [General fun	93.4
COG0863	302	DNA modification methylase [DNA replication, recom	92.92
COG1743	875	Adenine-specific DNA methylase containing a Zn-rib	91.56
PF05050	167	Methyltransf_21: Methyltransferase FkbM domain; In	91.36
PF13578	106	Methyltransf_24: Methyltransferase domain; PDB: 3S	91.01
KOG1975	389	consensus mRNA cap methyltransferase [RNA processi	90.85
PF05219	265	DREV: DREV methyltransferase; InterPro: IPR007884	90.83
PF01269	229	Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr	90.75
COG0500	257	SmtA SAM-dependent methyltransferases [Secondary m	90.68
KOG3115	249	consensus Methyltransferase-like protein [General	89.88
KOG0822	649	consensus Protein kinase inhibitor [Cell cycle con	88.64
PF03059	276	NAS: Nicotianamine synthase protein; InterPro: IPR	88.38
PF01861	243	DUF43: Protein of unknown function DUF43; InterPro	87.86
COG0275	314	Predicted S-adenosylmethionine-dependent methyltra	87.35
PF09243	274	Rsm22: Mitochondrial small ribosomal subunit Rsm22	87.34
KOG0024	354	consensus Sorbitol dehydrogenase [Secondary metabo	87.14
KOG2078	495	consensus tRNA modification enzyme [RNA processing	86.59
TIGR00497	501	hsdM type I restriction system adenine methylase (	85.36
PTZ00357	1072	methyltransferase; Provisional	84.95
COG0293	205	FtsJ 23S rRNA methylase [Translation, ribosomal st	84.87
KOG2198	375	consensus tRNA cytosine-5-methylases and related e	84.42
KOG2651	476	consensus rRNA adenine N-6-methyltransferase [RNA	84.28
COG1062	366	AdhC Zn-dependent alcohol dehydrogenases, class II	82.74
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	82.63
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	82.28
COG3392	330	Adenine-specific DNA methylase [DNA replication, r	81.48
KOG2920	282	consensus Predicted methyltransferase [General fun	81.18
COG1568	354	Predicted methyltransferases [General function pre	81.06

>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]

Probab=100.00  E-value=2e-57  Score=450.67  Aligned_cols=293  Identities=48%  Similarity=0.812  Sum_probs=244.9

Q ss_pred             CEEEEEcCCCCcccHHHHHHHHHhccCCCeeEEEEecCCccccccccceEEEecCCccEEEEEeCCeEEEEccCceeecC
Q 046527            1 HIAHLNIHDELLPFKDVIAKVIYDKNYPRIKTVVNKVGTIANEFRVPEFEILAGEDNMVTEVKQYGATFKLDYSLVYWNS   80 (380)
Q Consensus         1 hIahinl~~~~lp~k~~I~~aLldk~~p~iktVv~k~~~i~~~~r~~~~elLaG~~~~~~~v~E~G~~F~id~~~ff~n~   80 (380)
                      ||||+|+.++.+|++..|+++++||+ +.+++|++|.+.+++.||.+++++|+|+....++++|+|++|.+|++.+||++
T Consensus       156 hIaHLNl~~e~lpfk~iI~~Vi~DK~-n~~ktvv~K~~~Itn~yR~~~~eviAGe~n~vtevre~~~~Fk~DfskVYWns  234 (495)
T KOG2078|consen  156 HIAHLNLRDEQLPFKRIIGQVIYDKN-NLIKTVVNKIGRITNRYRNFKLEVIAGERNLVTEVREGGERFKFDFSKVYWNS  234 (495)
T ss_pred             eeEEeeccchhccHHHHHHHHhhccC-CCceEeeecccchhhhhcccCceEecCCCceEEEEecCCeeEEEecceEEeec
Confidence            99999999999999999999999997 99999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHhccCCCCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCc-EEEEeccHHHHHHH
Q 046527           81 RLEHEHLRIISQFRPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKVDNY-VRAYNMDAREFIRQ  159 (380)
Q Consensus        81 rl~tE~~r~i~~i~~g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~lN~l~~r-i~~~~~Da~e~l~~  159 (380)
                      ||.+|+.|+...+++|++|+|+|||+|+|++++++++|+|+++|+||++++|++.|+++|++..+ ++++++|+.+|+++
T Consensus       235 RL~~Eherlsg~fk~gevv~D~FaGvGPfa~Pa~kK~crV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda~~Flr~  314 (495)
T KOG2078|consen  235 RLSHEHERLSGLFKPGEVVCDVFAGVGPFALPAAKKGCRVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDAKDFLRQ  314 (495)
T ss_pred             cchhHHHHHhhccCCcchhhhhhcCcCccccchhhcCcEEEecCCCHHHHHHHHHhccccccchhheeeecccHHHHhhc
Confidence            99999999999999999999999999999999999999999999999999999999999999976 99999999999974


Q ss_pred             HhcCCCCCCCCcchhhhhhccCCCCcccccccccccccccccccccccccCCCCccccccccccCcccccccCCCCCCcc
Q 046527          160 LMTAPAGEINSESDVFNLKACGNSGIQANKKTGIENVGLDVQDKEVAGNITSNSEGLQNYCRNADASVTATKRPSDGCLE  239 (380)
Q Consensus       160 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (380)
                      -..   .+..     ++.+                         ++.+.   |                 .++.+     
T Consensus       315 e~~---~~~~-----~I~~-------------------------~v~~k---l-----------------~k~~~-----  336 (495)
T KOG2078|consen  315 EPL---PYKR-----LIAD-------------------------EVLDK---L-----------------MKKIG-----  336 (495)
T ss_pred             CCc---hhhh-----HHHH-------------------------HHhhh---h-----------------hhhhc-----
Confidence            210   0000     0000                         00000   0                 00000     


Q ss_pred             cCCCCCCCCCCCCCccccccCCCCCCCCCCceeeEEEecCCchHHHHHHHHHHhhhh-cccCC-CCcEEEEEeccc---C
Q 046527          240 ENGTTNSASGRKGKTSKRMKGSELPNTKTWEHVDHIIMNLPASALKFLDAFRGLIQR-QYWKG-SLPWIHCYCFIR---A  314 (380)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~vmNLP~~A~eFLd~f~gl~~~-~~~~~-~~p~iH~Y~F~~---~  314 (380)
                               +.+.    ..+..+.|-...|.+++|+|||||++|++||++|+|.+.+ +.|.. .+|+||||||++   +
T Consensus       337 ---------t~~~----~~d~~p~~~~~~~~~i~hvvmnLPa~avefL~~F~~~la~k~~~d~~~lplvhcy~F~k~~~~  403 (495)
T KOG2078|consen  337 ---------TVVN----KIDRIPQPFRTMQLHIVHVVMNLPASAVEFLLRFSGDLARKGPIDKTPLPLVHCYCFSKLFCD  403 (495)
T ss_pred             ---------cccc----ccccCCCcccccchhhhhhhccChHHHHHHHHHhHHHHhccCccccccceeEEEEEEeecccC
Confidence                     0000    0001111122346679999999999999999999999987 67744 789999999999   6


Q ss_pred             CCchHH-HHHHHHHHhcccCCCC---eEEEeccCCCCCceEEEEEEechhhhccc
Q 046527          315 NETEEL-IISEAESALNACIQDP---IFHKVRNVAPNKAMFCLSFRLPEACFSAK  365 (380)
Q Consensus       315 ~~~~~~-~~~~~~~~lg~~~~~~---~~~~VR~VaP~k~m~c~sF~lp~~~~~~~  365 (380)
                      .++.++ +.+++...++..+++.   .+|.||+|||||.|||++|+||..+|-++
T Consensus       404 ~~s~e~~V~ar~~~~~kv~~e~~~~~~~h~VR~VapnK~M~ca~~~lp~~~l~~~  458 (495)
T KOG2078|consen  404 VSSTEDLVTARIVAALKVFAEDGALVSLHLVRKVAPNKEMYCASFQLPANVLVNE  458 (495)
T ss_pred             CCchHHHHHHHHHhhcceeeccccceeeeeeeccCCCcccchhhhhcHHHHhhhh
Confidence            666666 8889999999888775   89999999999999999999999999443

>COG2520 Predicted methyltransferase [General function prediction only]

Probab=100.00  E-value=1.1e-44  Score=357.93  Aligned_cols=242  Identities=40%  Similarity=0.592  Sum_probs=222.2

Q ss_pred             CEEEEEcCCCCcccHHHHHHHHHhccCCCeeEEEEecCCccccccccceEEEecCCccEEEEEeCCeEEEEccCceeecC
Q 046527            1 HIAHLNIHDELLPFKDVIAKVIYDKNYPRIKTVVNKVGTIANEFRVPEFEILAGEDNMVTEVKQYGATFKLDYSLVYWNS   80 (380)
Q Consensus         1 hIahinl~~~~lp~k~~I~~aLldk~~p~iktVv~k~~~i~~~~r~~~~elLaG~~~~~~~v~E~G~~F~id~~~ff~n~   80 (380)
                      +||+++++++..+|+..|+++|++.+ +.+++|+.+.+.+.|++|.+.+++|+|+..+.+.++|+||.|++|+.++||++
T Consensus        95 dIai~~~~~e~~~~~~~i~~ai~~~~-~~vk~V~~k~~~v~G~~R~~~le~laGe~~teTihrE~G~~f~vD~~Kv~Fsp  173 (341)
T COG2520          95 DIAILSIPDELEPYKREIAEAILRVH-GKVKAVLLKEGPVAGEFRVPRLEVLAGERRTETIHRENGCRFKVDVAKVYFSP  173 (341)
T ss_pred             cEEEEeCCcccchHHHHHHHHHHhhc-cCeeEEEEecCccCCeEeccceEEeecCCCceEEEecCCEEEEEchHHeEECC
Confidence            59999999998899999999999976 99999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHhccCCCCeEEEecCCcchhHHHHhhcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHHHHH
Q 046527           81 RLEHEHLRIISQFRPGETICDMFAGIGPFAIPAAQKGC-IVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFIRQ  159 (380)
Q Consensus        81 rl~tE~~r~i~~i~~g~~VLDlfcGvG~fsl~aA~~g~-~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~l~~  159 (380)
                      ++++|+.|++..+.+|++|+|||||+|+|++++|++|+ .|+|+|+||+|++++++|+++|++.+++++++||+++++.+
T Consensus       174 rl~~ER~Rva~~v~~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~  253 (341)
T COG2520         174 RLSTERARVAELVKEGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPE  253 (341)
T ss_pred             CchHHHHHHHhhhcCCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhc
Confidence            99999999999999999999999999999999999998 59999999999999999999999999999999999998755


Q ss_pred             HhcCCCCCCCCcchhhhhhccCCCCcccccccccccccccccccccccccCCCCccccccccccCcccccccCCCCCCcc
Q 046527          160 LMTAPAGEINSESDVFNLKACGNSGIQANKKTGIENVGLDVQDKEVAGNITSNSEGLQNYCRNADASVTATKRPSDGCLE  239 (380)
Q Consensus       160 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (380)
                      +.                                                                              
T Consensus       254 ~~------------------------------------------------------------------------------  255 (341)
T COG2520         254 LG------------------------------------------------------------------------------  255 (341)
T ss_pred             cc------------------------------------------------------------------------------
Confidence            31                                                                              


Q ss_pred             cCCCCCCCCCCCCCccccccCCCCCCCCCCceeeEEEecCCchHHHHHHHHHHhhhhcccCCCCcEEEEEecccCCCchH
Q 046527          240 ENGTTNSASGRKGKTSKRMKGSELPNTKTWEHVDHIIMNLPASALKFLDAFRGLIQRQYWKGSLPWIHCYCFIRANETEE  319 (380)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~vmNLP~~A~eFLd~f~gl~~~~~~~~~~p~iH~Y~F~~~~~~~~  319 (380)
                                                     .+||||||||.+|.+||+....+.+.+      ++||+|.|+++++.++
T Consensus       256 -------------------------------~aDrIim~~p~~a~~fl~~A~~~~k~~------g~iHyy~~~~e~~~~~  298 (341)
T COG2520         256 -------------------------------VADRIIMGLPKSAHEFLPLALELLKDG------GIIHYYEFVPEDDIEE  298 (341)
T ss_pred             -------------------------------cCCEEEeCCCCcchhhHHHHHHHhhcC------cEEEEEeccchhhccc
Confidence                                           189999999999999999999998765      7999999999888533


Q ss_pred             ---HHHHHHHHHhcccCCCCeEEEeccCCCCCceEEEEEEec
Q 046527          320 ---LIISEAESALNACIQDPIFHKVRNVAPNKAMFCLSFRLP  358 (380)
Q Consensus       320 ---~~~~~~~~~lg~~~~~~~~~~VR~VaP~k~m~c~sF~lp  358 (380)
                         ..+..+....|...+....|.|++|||+.++||+++++.
T Consensus       299 ~~~~~i~~~~~~~~~~~~v~~~r~VksysP~v~hv~vd~~v~  340 (341)
T COG2520         299 RPEKRIKSAARKGGYKVEVLKVRRVKSYSPGVYHVVVDLRVL  340 (341)
T ss_pred             chHHHHHHHHhhccCcceEEEEEEecccCCCeeEEEEEEEec
Confidence               334455666666677788999999999999999999875

>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family

Probab=100.00  E-value=1.3e-41  Score=315.21  Aligned_cols=157  Identities=50%  Similarity=0.831  Sum_probs=130.7

Q ss_pred             CEEEEEcCCCCcccHHHHHHHHHhccCCCeeEEEEecCCccccccccceEEEecCCccEEEEEeCCeEEEEccCceeecC
Q 046527            1 HIAHLNIHDELLPFKDVIAKVIYDKNYPRIKTVVNKVGTIANEFRVPEFEILAGEDNMVTEVKQYGATFKLDYSLVYWNS   80 (380)
Q Consensus         1 hIahinl~~~~lp~k~~I~~aLldk~~p~iktVv~k~~~i~~~~r~~~~elLaG~~~~~~~v~E~G~~F~id~~~ff~n~   80 (380)
                      ||||++++++.++|++.|+++|++++ |.+++|++|.+.+.+++|++++++|+|++.+.++++|+|++|.+|+.++||++
T Consensus         8 ~Iaiv~~~~~~~~~~~~I~~~i~~~~-~~vktV~~k~~~v~g~~R~~~~~~LaG~~~~~t~~~E~G~~f~~D~~kvyfs~   86 (200)
T PF02475_consen    8 DIAIVNLPEELEPYKELIAEAILEKN-PNVKTVYNKIGIVEGEFRTPDLEVLAGEPRTETIHKENGIRFKVDLSKVYFSP   86 (200)
T ss_dssp             TEEEEEB-CCCCHHHHHHHHHHHHHC--T-SEEEEE-S-SBTTTTB--EEEEEES--SEEEEEETTEEEEEETTTS---G
T ss_pred             cEEEEeCCcccchHHHHHHHHHHHhc-cCceEEEEecCcCCCCcccccEEEEeCCCceEEEEEeCCEEEEEccceEEEcc
Confidence            79999999999999999999999976 99999999999889999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHhccCCCCeEEEecCCcchhHHHHhh--cCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHHHH
Q 046527           81 RLEHEHLRIISQFRPGETICDMFAGIGPFAIPAAQ--KGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFIR  158 (380)
Q Consensus        81 rl~tE~~r~i~~i~~g~~VLDlfcGvG~fsl~aA~--~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~l~  158 (380)
                      ++.+|+.|++..+.+|++|+|+|||+|+|++++|+  +++.|+|+|+||+|++++++|+++|++++++.++++|+++++.
T Consensus        87 rl~~Er~Ri~~~v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~  166 (200)
T PF02475_consen   87 RLSTERRRIANLVKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLP  166 (200)
T ss_dssp             GGHHHHHHHHTC--TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG---
T ss_pred             ccHHHHHHHHhcCCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcC
Confidence            99999999999999999999999999999999999  6679999999999999999999999999999999999998865

Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.

>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional

Probab=99.82  E-value=2.5e-18  Score=174.63  Aligned_cols=155  Identities=14%  Similarity=0.187  Sum_probs=123.7

Q ss_pred             EEEEEcCCC-CcccHHHHHHHHHhccCCCeeEEEEecCCcccc--ccccceEEEecCC-ccEEEEEeCCeEEEEccCc--
Q 046527            2 IAHLNIHDE-LLPFKDVIAKVIYDKNYPRIKTVVNKVGTIANE--FRVPEFEILAGED-NMVTEVKQYGATFKLDYSL--   75 (380)
Q Consensus         2 Iahinl~~~-~lp~k~~I~~aLldk~~p~iktVv~k~~~i~~~--~r~~~~elLaG~~-~~~~~v~E~G~~F~id~~~--   75 (380)
                      ++++++.+. +..++..|.++|.. . ...++|+.+.+.....  -......+++|+. +....++|+|++|.+|+..  
T Consensus       123 ~~vvq~~~~~~~~~~~~i~~aL~~-~-~~~~~i~~r~~~~~r~~egl~~~~~~~~G~~~~~~~~v~E~g~~f~vdl~~g~  200 (396)
T PRK15128        123 FLVLQLLSAGAEYQRAALISALQT-L-YPECAIYDRSDVAVRKKEGMELTQGPVTGELPPALLPIEEHGMKLLVDIQGGH  200 (396)
T ss_pred             EEEEEECcHHHHHhHHHHHHHHHH-H-cCCcEEEEcCcchhHHhcCCCccceEEecCCCCccEEEEECCEEEEEeccccc
Confidence            678888885 45688999999998 4 3346888775433211  1223456889985 5567799999999999874  


Q ss_pred             ---eeecChHHHHHHHHHhccCCCCeEEEecCCcchhHHHHhhcCC-EEEEEeCCHHHHHHHHHHHHHcCCC-CcEEEEe
Q 046527           76 ---VYWNSRLEHEHLRIISQFRPGETICDMFAGIGPFAIPAAQKGC-IVFANDLNPDSVHYLKINAKVNKVD-NYVRAYN  150 (380)
Q Consensus        76 ---ff~n~rl~tE~~r~i~~i~~g~~VLDlfcGvG~fsl~aA~~g~-~V~avDlnp~Aie~a~~Na~lN~l~-~ri~~~~  150 (380)
                         +|+++|   +.+..+..+.+|++|||+|||+|.|++.++..++ +|+++|+|+.++++|++|+++|+++ +++++++
T Consensus       201 ktG~flDqr---~~R~~~~~~~~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~  277 (396)
T PRK15128        201 KTGYYLDQR---DSRLATRRYVENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVR  277 (396)
T ss_pred             ccCcChhhH---HHHHHHHHhcCCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEE
Confidence               998888   4445555567799999999999999999887776 9999999999999999999999997 4699999


Q ss_pred             ccHHHHHHHHh
Q 046527          151 MDAREFIRQLM  161 (380)
Q Consensus       151 ~Da~e~l~~l~  161 (380)
                      +|+.++++.+.
T Consensus       278 ~D~~~~l~~~~  288 (396)
T PRK15128        278 DDVFKLLRTYR  288 (396)
T ss_pred             ccHHHHHHHHH
Confidence            99999987654

>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]

Probab=99.78  E-value=6.6e-18  Score=170.77  Aligned_cols=156  Identities=21%  Similarity=0.329  Sum_probs=128.8

Q ss_pred             EEEEEcCCC-CcccHHHHHHHHHhccCCCeeEEEEecCCc-cccccc-cceEEEec-CCccEEEEEeCCeEEEEccC---
Q 046527            2 IAHLNIHDE-LLPFKDVIAKVIYDKNYPRIKTVVNKVGTI-ANEFRV-PEFEILAG-EDNMVTEVKQYGATFKLDYS---   74 (380)
Q Consensus         2 Iahinl~~~-~lp~k~~I~~aLldk~~p~iktVv~k~~~i-~~~~r~-~~~elLaG-~~~~~~~v~E~G~~F~id~~---   74 (380)
                      ++|+|+.+. .++.++.|.++|.+ .++.+.+|+.+.+.. .+..+. .....++| .......+.|+|.+|.++..   
T Consensus       119 ~~vvq~~s~~~~~~~~~i~~~l~~-~~~~~~~v~e~s~~~~r~~~~~~~~~~~~~g~~~~~~~~i~E~g~kf~v~~~~g~  197 (393)
T COG1092         119 YLVVQLYSAGIEIFKEAILEALAE-AFPAPKGVYEKSDVRLRRREGLKGRSQYLKGEEAPEEVVIEENGVKFLVDLVDGL  197 (393)
T ss_pred             EEEEEecccccccchHHHHHHHHH-hhcccceeEeccchhhhhhhcccccccccccccCCCcEEEEeCCeEEEEecCCcc
Confidence            578888885 66778899999999 557799999886322 111121 24456778 46677888999999999987   


Q ss_pred             --ceeecChHHHHHHHHHhccCCCCeEEEecCCcchhHHHHhhcCC-EEEEEeCCHHHHHHHHHHHHHcCCC-CcEEEEe
Q 046527           75 --LVYWNSRLEHEHLRIISQFRPGETICDMFAGIGPFAIPAAQKGC-IVFANDLNPDSVHYLKINAKVNKVD-NYVRAYN  150 (380)
Q Consensus        75 --~ff~n~rl~tE~~r~i~~i~~g~~VLDlfcGvG~fsl~aA~~g~-~V~avDlnp~Aie~a~~Na~lN~l~-~ri~~~~  150 (380)
                        .||.++|   +.++.+.....|++|||+||+||+||+++|..|+ +|++||+|..++++|++|+++|+++ +++.+++
T Consensus       198 kTGfFlDqR---~~R~~l~~~~~GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~  274 (393)
T COG1092         198 KTGFFLDQR---DNRRALGELAAGKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNGLDGDRHRFIV  274 (393)
T ss_pred             cceeeHHhH---HHHHHHhhhccCCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHhcCCCccceeeeh
Confidence              4999999   5566665555599999999999999999999999 9999999999999999999999996 5789999


Q ss_pred             ccHHHHHHHHh
Q 046527          151 MDAREFIRQLM  161 (380)
Q Consensus       151 ~Da~e~l~~l~  161 (380)
                      +|+.++++.+.
T Consensus       275 ~Dvf~~l~~~~  285 (393)
T COG1092         275 GDVFKWLRKAE  285 (393)
T ss_pred             hhHHHHHHHHH
Confidence            99999998875

>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA

Probab=99.76  E-value=1.5e-16  Score=162.81  Aligned_cols=147  Identities=22%  Similarity=0.362  Sum_probs=119.8

Q ss_pred             CCcccHHHHHHHHHhccCCCeeEEEEecCCc-cccccccceEEEecCCccEEEEEeCCeEEEEccCceeecChHHHHHH-
Q 046527           10 ELLPFKDVIAKVIYDKNYPRIKTVVNKVGTI-ANEFRVPEFEILAGEDNMVTEVKQYGATFKLDYSLVYWNSRLEHEHL-   87 (380)
Q Consensus        10 ~~lp~k~~I~~aLldk~~p~iktVv~k~~~i-~~~~r~~~~elLaG~~~~~~~v~E~G~~F~id~~~ff~n~rl~tE~~-   87 (380)
                      ..++....|++.|... +|.+++|+...+.. ...+...+.++++|...+.+.+  +|..|.+++..|||.|+..++.+ 
T Consensus       205 ~~~~~~~~~~~~l~~~-~~~v~~v~~~~~~~~~~~~~g~~~~~l~G~~~~~~~~--~~~~~~~~~~~F~Q~N~~~~~~l~  281 (431)
T TIGR00479       205 EGFPHKEELALELQER-YPDVKSICQNINPEKTNVIFGEETEQIAGEGPIYEKS--GDLSFSLSARDFFQVNSGQNEKLV  281 (431)
T ss_pred             CccccHHHHHHHHHHh-CCCceEEEEEeCCCCCCeeeCCceEEEeCCCeEEEEE--CCEEEEECCCceeecCHHHHHHHH
Confidence            3446677888888874 59999998765433 3344455678899998777777  89999999999999988777654 


Q ss_pred             H-HH--hccCCCCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHHHHHH
Q 046527           88 R-II--SQFRPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFIRQL  160 (380)
Q Consensus        88 r-~i--~~i~~g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~l~~l  160 (380)
                      . +.  ..+.++++|||+|||+|.+++.+|+.+.+|+|+|+++.+++.|++|++.|++.+ ++++++|+.+++..+
T Consensus       282 ~~~~~~l~~~~~~~vLDl~cG~G~~sl~la~~~~~V~~vE~~~~av~~a~~n~~~~~~~n-v~~~~~d~~~~l~~~  356 (431)
T TIGR00479       282 DRALEALELQGEELVVDAYCGVGTFTLPLAKQAKSVVGIEVVPESVEKAQQNAELNGIAN-VEFLAGTLETVLPKQ  356 (431)
T ss_pred             HHHHHHhccCCCCEEEEcCCCcCHHHHHHHHhCCEEEEEEcCHHHHHHHHHHHHHhCCCc-eEEEeCCHHHHHHHH
Confidence            2 22  234677899999999999999999988899999999999999999999999976 999999998876543

This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.

>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species

Probab=99.76  E-value=4.9e-17  Score=158.57  Aligned_cols=154  Identities=23%  Similarity=0.379  Sum_probs=113.4

Q ss_pred             EEEEEcCCC-CcccHHHHHHHHHhccCCCeeEEEEe-cC-Cc--cccc-cccceEEEecCCccEEEEEeCCeEEEEccC-
Q 046527            2 IAHLNIHDE-LLPFKDVIAKVIYDKNYPRIKTVVNK-VG-TI--ANEF-RVPEFEILAGEDNMVTEVKQYGATFKLDYS-   74 (380)
Q Consensus         2 Iahinl~~~-~lp~k~~I~~aLldk~~p~iktVv~k-~~-~i--~~~~-r~~~~elLaG~~~~~~~v~E~G~~F~id~~-   74 (380)
                      ..++++..+ ...++..|.++|.... +  ..++.. .. .+  ...+ .....++++|+.+...++.|+|++|.+++. 
T Consensus        25 ~lvvq~~~~~~~~~~~~l~~~L~~l~-~--~~~~~~~~~~~~~~~~r~~~~~~~~~l~G~~~~~~~v~E~gl~f~v~l~~  101 (286)
T PF10672_consen   25 VLVVQLYSEGMERFLDELREALEALI-P--PGIYEKKQGRSIVLRKREKEGAPSEVLYGEPPEFFTVEENGLKFRVDLTD  101 (286)
T ss_dssp             EEEEEE-SHHHHCTHHHHHHHHHHHH-C--CCECEEEEGGGCCCCHHTTTT-EEEEEESS-SSEEEEEETTEEEEEESSS
T ss_pred             EEEEEECCcChHHHHHHHHHHHHHHh-h--cceeeeccccceeehhhhccCCCceEEecCCCCceEEEECCEEEEEEcCC
Confidence            356666654 4577788888887632 2  122222 11 11  1111 123567899998877889999999999986 


Q ss_pred             ----ceeecChHHHHHHHHHhccCCCCeEEEecCCcchhHHHHhhcCC-EEEEEeCCHHHHHHHHHHHHHcCCC-CcEEE
Q 046527           75 ----LVYWNSRLEHEHLRIISQFRPGETICDMFAGIGPFAIPAAQKGC-IVFANDLNPDSVHYLKINAKVNKVD-NYVRA  148 (380)
Q Consensus        75 ----~ff~n~rl~tE~~r~i~~i~~g~~VLDlfcGvG~fsl~aA~~g~-~V~avDlnp~Aie~a~~Na~lN~l~-~ri~~  148 (380)
                          .+|.++|   +.++++....+|.+|||+||++|+||+.++..|+ +|++||.|..+++++++|+++|+++ +++++
T Consensus       102 gqktGlFlDqR---~nR~~v~~~~~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~  178 (286)
T PF10672_consen  102 GQKTGLFLDQR---ENRKWVRKYAKGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALNGLDLDRHRF  178 (286)
T ss_dssp             SSSTSS-GGGH---HHHHHHHHHCTTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEE
T ss_pred             CCcceEcHHHH---hhHHHHHHHcCCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEE
Confidence                4999999   6666666678899999999999999999999987 8999999999999999999999997 67999


Q ss_pred             EeccHHHHHHHHh
Q 046527          149 YNMDAREFIRQLM  161 (380)
Q Consensus       149 ~~~Da~e~l~~l~  161 (380)
                      +++|+.++++.+.
T Consensus       179 ~~~Dvf~~l~~~~  191 (286)
T PF10672_consen  179 IQGDVFKFLKRLK  191 (286)
T ss_dssp             EES-HHHHHHHHH
T ss_pred             EecCHHHHHHHHh
Confidence            9999999998754

The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.

>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=99.72  E-value=2e-16  Score=162.24  Aligned_cols=142  Identities=25%  Similarity=0.421  Sum_probs=117.5

Q ss_pred             cccHHHHHHHHHhccCCCeeEEEEecCCc-cccccccceEEEecCCccEEEEEeCCeEEEEccCceeecChHHHHHH-HH
Q 046527           12 LPFKDVIAKVIYDKNYPRIKTVVNKVGTI-ANEFRVPEFEILAGEDNMVTEVKQYGATFKLDYSLVYWNSRLEHEHL-RI   89 (380)
Q Consensus        12 lp~k~~I~~aLldk~~p~iktVv~k~~~i-~~~~r~~~~elLaG~~~~~~~v~E~G~~F~id~~~ff~n~rl~tE~~-r~   89 (380)
                      ++......+.++. .+|.+.+++..++.. .+........+++|...    ++| |..|.+++.+|||.|..+++.+ ..
T Consensus       211 ~~~~~~~~~~~~~-~~~~~~~i~~~i~~~~~~~i~g~~~~~~~~~~~----i~e-~~~~~~~~~sF~Q~N~~~~ekl~~~  284 (432)
T COG2265         211 LPELEQALRELLE-AFPEIKGIVQNINRAKTNVIEGDEEITLYGLES----IRE-GVSFQISPRSFFQVNPAVAEKLYET  284 (432)
T ss_pred             chhHHHHHHHHHH-hhhhcceEEEEecCCCCceEEcceeEEEecccc----ccc-ceEEEeCCCCceecCHHHHHHHHHH
Confidence            5567788888888 579999998877654 34445556677777652    233 8999999999999999999876 22


Q ss_pred             H---hccCCCCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHHHHHH
Q 046527           90 I---SQFRPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFIRQL  160 (380)
Q Consensus        90 i---~~i~~g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~l~~l  160 (380)
                      +   ....++++|||+|||+|.||+++|++..+|+|+|++++|++.|++|++.|++.| +++..+|+++++...
T Consensus       285 a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~~~~V~gvEi~~~aV~~A~~NA~~n~i~N-~~f~~~~ae~~~~~~  357 (432)
T COG2265         285 ALEWLELAGGERVLDLYCGVGTFGLPLAKRVKKVHGVEISPEAVEAAQENAAANGIDN-VEFIAGDAEEFTPAW  357 (432)
T ss_pred             HHHHHhhcCCCEEEEeccCCChhhhhhcccCCEEEEEecCHHHHHHHHHHHHHcCCCc-EEEEeCCHHHHhhhc
Confidence            2   334577899999999999999999999999999999999999999999999999 999999999997654

>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB

Probab=99.71  E-value=1.8e-15  Score=152.67  Aligned_cols=141  Identities=12%  Similarity=0.200  Sum_probs=110.9

Q ss_pred             ccHHHHHHHHHhccCCCeeEEEEecCCc-cccccccceEEEecCCccEEEEEeCCeEEEEccCceeecChHHHHHH-HHH
Q 046527           13 PFKDVIAKVIYDKNYPRIKTVVNKVGTI-ANEFRVPEFEILAGEDNMVTEVKQYGATFKLDYSLVYWNSRLEHEHL-RII   90 (380)
Q Consensus        13 p~k~~I~~aLldk~~p~iktVv~k~~~i-~~~~r~~~~elLaG~~~~~~~v~E~G~~F~id~~~ff~n~rl~tE~~-r~i   90 (380)
                      +..+.+.+.+.+ .+|.+.+|+...+.. .+.+...+..+++|.+.+.+.+  +|+.|.+++.+|||.+....+.+ ..+
T Consensus       149 ~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~g~~~~~l~G~~~i~e~~--~g~~~~~~~~~F~Q~n~~~~~~l~~~~  225 (374)
T TIGR02085       149 AQIRRALPWLIE-QLPQLEVISVNIQPVHMAILEGEEEIFLTEQQALPERF--NDVPLVIRPQSFFQTNPKVAAQLYATA  225 (374)
T ss_pred             hhHHHHHHHHHH-HCCCcEEEEEEECCCCCCceECceEEEEcCCCeeEEEE--CCEEEEECCCccccCCHHHHHHHHHHH
Confidence            444555565655 348888886544332 2333334556789988777777  89999999999999999888876 332


Q ss_pred             hc---cCCCCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHHH
Q 046527           91 SQ---FRPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFI  157 (380)
Q Consensus        91 ~~---i~~g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~l  157 (380)
                      ..   ..++.+|||+|||+|.|++.+|..+.+|+|+|+++.|++.|++|++.|++++ ++++++|+.+++
T Consensus       226 ~~~l~~~~~~~vLDL~cG~G~~~l~la~~~~~v~~vE~~~~av~~a~~N~~~~~~~~-~~~~~~d~~~~~  294 (374)
T TIGR02085       226 RQWVREIPVTQMWDLFCGVGGFGLHCAGPDTQLTGIEIESEAIACAQQSAQMLGLDN-LSFAALDSAKFA  294 (374)
T ss_pred             HHHHHhcCCCEEEEccCCccHHHHHHhhcCCeEEEEECCHHHHHHHHHHHHHcCCCc-EEEEECCHHHHH
Confidence            22   2356899999999999999999988899999999999999999999999974 999999998876

This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=99.69  E-value=9.9e-16  Score=165.87  Aligned_cols=152  Identities=17%  Similarity=0.200  Sum_probs=116.2

Q ss_pred             CEEEEEcCCC--------CcccHHHHHHHHHhccC-CCeeEEEEecCCccccccccceEEEecCCccEEEEEeCCeEEEE
Q 046527            1 HIAHLNIHDE--------LLPFKDVIAKVIYDKNY-PRIKTVVNKVGTIANEFRVPEFEILAGEDNMVTEVKQYGATFKL   71 (380)
Q Consensus         1 hIahinl~~~--------~lp~k~~I~~aLldk~~-p~iktVv~k~~~i~~~~r~~~~elLaG~~~~~~~v~E~G~~F~i   71 (380)
                      +++++++...        +..++..|.++|.+ .+ ...++|+.|......  .......+ |+.+....+.|+|++|.+
T Consensus       437 ~~~vvq~~~~~~~~~~~~~~~~~~~i~~~l~~-~~~~~~~~i~~k~~~~~~--g~~~~~~~-g~~~~~~~v~e~g~~f~v  512 (702)
T PRK11783        437 DWVVVQEYAAPKTIDEEKARQRLFDALAATPE-VLGIPPNKVVLKTRERQK--GKNQYQKL-AEKGEFLEVTEYGAKLLV  512 (702)
T ss_pred             CEEEEEECCCccccCHHHHHHHHHHHHHHHHH-HhCCCCCEEEEEeehhcc--Ccchhhhc-cCCCceEEEEECCEEEEE
Confidence            3577777765        45678889999877 21 234688887332111  11111222 665666779999999999


Q ss_pred             ccCc-----eeecChHHHHHHHHHhccCCCCeEEEecCCcchhHHHHhhcCC-EEEEEeCCHHHHHHHHHHHHHcCCC-C
Q 046527           72 DYSL-----VYWNSRLEHEHLRIISQFRPGETICDMFAGIGPFAIPAAQKGC-IVFANDLNPDSVHYLKINAKVNKVD-N  144 (380)
Q Consensus        72 d~~~-----ff~n~rl~tE~~r~i~~i~~g~~VLDlfcGvG~fsl~aA~~g~-~V~avDlnp~Aie~a~~Na~lN~l~-~  144 (380)
                      ++..     +|+++|   +.++.+..+.+|.+|||+|||+|.|++.+++.|+ +|+++|+|+.++++|++|+++|++. +
T Consensus       513 ~~~~~~~tG~flDqr---~~R~~~~~~~~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~  589 (702)
T PRK11783        513 NLTDYLDTGLFLDHR---PTRRMIGQMAKGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLSGR  589 (702)
T ss_pred             EcCCCCcceECHHHH---HHHHHHHHhcCCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcc
Confidence            9764     888888   4455566666789999999999999999999887 7999999999999999999999997 6


Q ss_pred             cEEEEeccHHHHHHH
Q 046527          145 YVRAYNMDAREFIRQ  159 (380)
Q Consensus       145 ri~~~~~Da~e~l~~  159 (380)
                      +++++++|+.++++.
T Consensus       590 ~v~~i~~D~~~~l~~  604 (702)
T PRK11783        590 QHRLIQADCLAWLKE  604 (702)
T ss_pred             ceEEEEccHHHHHHH
Confidence            799999999988744

>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed

Probab=99.69  E-value=4.4e-15  Score=146.43  Aligned_cols=141  Identities=13%  Similarity=0.191  Sum_probs=109.9

Q ss_pred             ccHHHHHHHHHhccCCCeeEEEEecCC-ccccccccceEEEecCCccEEEEEeCCeEEEEccCceeecChHHHHHH-HHH
Q 046527           13 PFKDVIAKVIYDKNYPRIKTVVNKVGT-IANEFRVPEFEILAGEDNMVTEVKQYGATFKLDYSLVYWNSRLEHEHL-RII   90 (380)
Q Consensus        13 p~k~~I~~aLldk~~p~iktVv~k~~~-i~~~~r~~~~elLaG~~~~~~~v~E~G~~F~id~~~ff~n~rl~tE~~-r~i   90 (380)
                      +....+.+.+..+ +|.+.+|...... ..+.....+...++|.+.+.+.+  .|+.|.+.+..|||.++.+++.+ +.+
T Consensus        89 ~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~g~~~~~l~g~~~~~~~~--~~~~~~~~~~sF~Q~n~~~~~~l~~~v  165 (315)
T PRK03522         89 ARLRRALPWLQAQ-LPQLKVISVNIQPVHMAILEGEEEIFLTEQQALPERF--NGVPLFIRPQSFFQTNPAVAAQLYATA  165 (315)
T ss_pred             hhHHHHHHHHHHH-CCCCEEEEEEECCCCCCcccCCceEEEeCCCeEEEEE--CCEEEEECCCeeeecCHHHHHHHHHHH
Confidence            4444555556553 5888888654433 23333344567789988877777  89999999999999998877765 222


Q ss_pred             -hc--cCCCCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHHH
Q 046527           91 -SQ--FRPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFI  157 (380)
Q Consensus        91 -~~--i~~g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~l  157 (380)
                       ..  ..++.+|||+|||+|.+++.+|+.+++|+|+|+++.+++.|++|++.|++. +++++++|+.+++
T Consensus       166 ~~~l~~~~~~~VLDl~cG~G~~sl~la~~~~~V~gvD~s~~av~~A~~n~~~~~l~-~v~~~~~D~~~~~  234 (315)
T PRK03522        166 RDWVRELPPRSMWDLFCGVGGFGLHCATPGMQLTGIEISAEAIACAKQSAAELGLT-NVQFQALDSTQFA  234 (315)
T ss_pred             HHHHHhcCCCEEEEccCCCCHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEEcCHHHHH
Confidence             11  235789999999999999999999999999999999999999999999996 4999999998765

>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]

Probab=99.63  E-value=1.1e-15  Score=156.70  Aligned_cols=145  Identities=18%  Similarity=0.289  Sum_probs=118.1

Q ss_pred             ccHHHHHHHHHhccCCCeeE----EEEec-CCccccccccceEEEecCCccEEEEEeCCeEEEEccCceeecChHHHHHH
Q 046527           13 PFKDVIAKVIYDKNYPRIKT----VVNKV-GTIANEFRVPEFEILAGEDNMVTEVKQYGATFKLDYSLVYWNSRLEHEHL   87 (380)
Q Consensus        13 p~k~~I~~aLldk~~p~ikt----Vv~k~-~~i~~~~r~~~~elLaG~~~~~~~v~E~G~~F~id~~~ff~n~rl~tE~~   87 (380)
                      ..++.|.+.+.+  +|...+    .|+.. ..+...--..+++++.|+..+.+.+  .|++|+|++..|||+|...+|.+
T Consensus       296 e~~~ki~~~f~~--~~~~a~~l~~l~~q~~~~ts~~~~~~~~~l~~~~~~I~E~l--~~ltF~iSp~AFFQ~Nt~~aevL  371 (534)
T KOG2187|consen  296 ELKKKIEQRFLS--GPGFASGLRVLYLQESGHTSDGQEGKPLQLVGGDPYITESL--LGLTFRISPGAFFQTNTSAAEVL  371 (534)
T ss_pred             HHHHHHHHHHhc--ccccccceeEEEEecccccccCCCCCCeEEEccccEEEeec--CCeEEEECCchhhccCcHHHHHH
Confidence            445666666666  465443    33322 2222223346889999999899999  99999999999999999999986


Q ss_pred             ----HHHhccCCCCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHHHHHHhc
Q 046527           88 ----RIISQFRPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFIRQLMT  162 (380)
Q Consensus        88 ----r~i~~i~~g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~l~~l~~  162 (380)
                          +....+..++.++|+|||+|.|++.+|++..+|+|||++|+|++.|++|++.||++| ++|++|-+++.+..+..
T Consensus       372 ys~i~e~~~l~~~k~llDv~CGTG~iglala~~~~~ViGvEi~~~aV~dA~~nA~~NgisN-a~Fi~gqaE~~~~sl~~  449 (534)
T KOG2187|consen  372 YSTIGEWAGLPADKTLLDVCCGTGTIGLALARGVKRVIGVEISPDAVEDAEKNAQINGISN-ATFIVGQAEDLFPSLLT  449 (534)
T ss_pred             HHHHHHHhCCCCCcEEEEEeecCCceehhhhccccceeeeecChhhcchhhhcchhcCccc-eeeeecchhhccchhcc
Confidence                333567888999999999999999999999999999999999999999999999998 99999999988877753

>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated

Probab=99.58  E-value=1.2e-13  Score=139.09  Aligned_cols=136  Identities=18%  Similarity=0.241  Sum_probs=104.2

Q ss_pred             cHHHHHHHHHhccCCCeeEEEEecCCccccccccceEEEecCCccEEEEEeCC--eEEEEccCceeecChHHHHHH-HHH
Q 046527           14 FKDVIAKVIYDKNYPRIKTVVNKVGTIANEFRVPEFEILAGEDNMVTEVKQYG--ATFKLDYSLVYWNSRLEHEHL-RII   90 (380)
Q Consensus        14 ~k~~I~~aLldk~~p~iktVv~k~~~i~~~~r~~~~elLaG~~~~~~~v~E~G--~~F~id~~~ff~n~rl~tE~~-r~i   90 (380)
                      ....+++.+.++ +|.+ ++..+         .....+++|.+.+.+.+.-+|  +.|++++.+|||.|+.+++.+ ..+
T Consensus       131 ~~~~~~~~l~~~-~~~~-~i~~~---------~~~~~~~~G~~~i~e~l~~~~~~~~~~~~~~sF~Q~N~~~~e~l~~~v  199 (362)
T PRK05031        131 EWEQAAKALRDA-LFNV-HLIGR---------SRKQKIVLDQDYVDERLPVAGREFIYRQVENSFTQPNAAVNEKMLEWA  199 (362)
T ss_pred             HHHHHHHHHHHH-CCCc-EEEec---------CCCcEEEcCCCEEEEEEecCCcEEEEEeCCCCeeccCHHHHHHHHHHH
Confidence            334566666663 4766 55221         112367889887766663235  899999999999999888876 333


Q ss_pred             -hccC-CCCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHHHHHHh
Q 046527           91 -SQFR-PGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFIRQLM  161 (380)
Q Consensus        91 -~~i~-~g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~l~~l~  161 (380)
                       ..+. .+.+|||+|||+|.|++++++...+|+|+|.++.|++.|++|++.|++++ ++++++|+.++++.+.
T Consensus       200 ~~~~~~~~~~vLDl~~G~G~~sl~la~~~~~v~~vE~~~~ai~~a~~N~~~~~~~~-v~~~~~d~~~~l~~~~  271 (362)
T PRK05031        200 LDATKGSKGDLLELYCGNGNFTLALARNFRRVLATEISKPSVAAAQYNIAANGIDN-VQIIRMSAEEFTQAMN  271 (362)
T ss_pred             HHHhhcCCCeEEEEeccccHHHHHHHhhCCEEEEEECCHHHHHHHHHHHHHhCCCc-EEEEECCHHHHHHHHh
Confidence             2232 23579999999999999999887899999999999999999999999975 9999999999987653

>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed

Probab=99.51  E-value=5.3e-13  Score=137.45  Aligned_cols=93  Identities=23%  Similarity=0.381  Sum_probs=82.3

Q ss_pred             CCeEEEEccCceeecChHHHHHH--HHHh--ccCCCCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHc
Q 046527           65 YGATFKLDYSLVYWNSRLEHEHL--RIIS--QFRPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVN  140 (380)
Q Consensus        65 ~G~~F~id~~~ff~n~rl~tE~~--r~i~--~i~~g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~lN  140 (380)
                      +|+.|++++..|||.++..++.+  .++.  ...++++|||+|||+|.+++.+|+.+.+|+|+|+|+.+++.|++|++.|
T Consensus       263 ~g~~f~~~~~~F~q~n~~~~e~l~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~~~~V~gvD~s~~al~~A~~n~~~~  342 (443)
T PRK13168        263 FGLRLAFSPRDFIQVNAQVNQKMVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQAAEVVGVEGVEAMVERARENARRN  342 (443)
T ss_pred             CCeEEEECCCCeEEcCHHHHHHHHHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHc
Confidence            79999999999999999888765  2222  3457889999999999999999999899999999999999999999999


Q ss_pred             CCCCcEEEEeccHHHHHH
Q 046527          141 KVDNYVRAYNMDAREFIR  158 (380)
Q Consensus       141 ~l~~ri~~~~~Da~e~l~  158 (380)
                      ++.+ ++++++|+.+.+.
T Consensus       343 ~~~~-v~~~~~d~~~~l~  359 (443)
T PRK13168        343 GLDN-VTFYHANLEEDFT  359 (443)
T ss_pred             CCCc-eEEEEeChHHhhh
Confidence            9976 9999999987653

>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2

Probab=99.47  E-value=1.8e-13  Score=137.23  Aligned_cols=111  Identities=24%  Similarity=0.440  Sum_probs=79.6

Q ss_pred             EEEecCCccEEE--EEeCCeEEEEccCceeecChHHHHHH-HH-HhccCC-CCeEEEecCCcchhHHHHhhcCCEEEEEe
Q 046527           50 EILAGEDNMVTE--VKQYGATFKLDYSLVYWNSRLEHEHL-RI-ISQFRP-GETICDMFAGIGPFAIPAAQKGCIVFAND  124 (380)
Q Consensus        50 elLaG~~~~~~~--v~E~G~~F~id~~~ff~n~rl~tE~~-r~-i~~i~~-g~~VLDlfcGvG~fsl~aA~~g~~V~avD  124 (380)
                      ..+.|.+.....  +.+.++.|++++.+|||.|+.+++.+ .. +..+.. +..|||+|||+|.||+++|..+.+|+|||
T Consensus       146 ~~~~~~~~v~~~l~~~~~~~~~~~~~~sFfQvN~~~~~~l~~~~~~~l~~~~~~vlDlycG~G~fsl~la~~~~~V~gvE  225 (352)
T PF05958_consen  146 KIVLGQDYVEERLEIQDKGLSFRISPGSFFQVNPEQNEKLYEQALEWLDLSKGDVLDLYCGVGTFSLPLAKKAKKVIGVE  225 (352)
T ss_dssp             EEECS-CEEECE--ECCCTEEEEEETTS---SBHHHHHHHHHHHHHHCTT-TTEEEEES-TTTCCHHHHHCCSSEEEEEE
T ss_pred             EEEccCcEEeeEeeeeccceEEEECCCcCccCcHHHHHHHHHHHHHHhhcCCCcEEEEeecCCHHHHHHHhhCCeEEEee
Confidence            344454433222  33457999999999999999888876 22 222221 23799999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHcCCCCcEEEEeccHHHHHHHHh
Q 046527          125 LNPDSVHYLKINAKVNKVDNYVRAYNMDAREFIRQLM  161 (380)
Q Consensus       125 lnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~l~~l~  161 (380)
                      +++.|++.|++|++.|+++| ++++++++.++...+.
T Consensus       226 ~~~~av~~A~~Na~~N~i~n-~~f~~~~~~~~~~~~~  261 (352)
T PF05958_consen  226 IVEEAVEDARENAKLNGIDN-VEFIRGDAEDFAKALA  261 (352)
T ss_dssp             S-HHHHHHHHHHHHHTT--S-EEEEE--SHHCCCHHC
T ss_pred             CCHHHHHHHHHHHHHcCCCc-ceEEEeeccchhHHHH
Confidence            99999999999999999997 9999999998876654

1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.

>KOG1227 consensus Putative methyltransferase [General function prediction only]

Probab=99.46  E-value=1.6e-13  Score=132.84  Aligned_cols=145  Identities=25%  Similarity=0.307  Sum_probs=108.9

Q ss_pred             EEEEEcCCCCcccHHHHHHHHHhccCCCeeEE----EEecCCcc-ccccccceEEEecCCccEEEEEeCCeEEEEccCce
Q 046527            2 IAHLNIHDELLPFKDVIAKVIYDKNYPRIKTV----VNKVGTIA-NEFRVPEFEILAGEDNMVTEVKQYGATFKLDYSLV   76 (380)
Q Consensus         2 Iahinl~~~~lp~k~~I~~aLldk~~p~iktV----v~k~~~i~-~~~r~~~~elLaG~~~~~~~v~E~G~~F~id~~~f   76 (380)
                      +++++.+.-.-|-=+.|++.+..   +..++.    +.+...+. ..-|++..++|+|+.. ++.++++|+.|.+|+..-
T Consensus       100 lvl~~~~sF~~~~W~~~~~e~w~---~va~sl~~~r~ar~~~vs~~~~R~~~v~~L~Gd~g-WV~~v~NGI~~~~d~t~~  175 (351)
T KOG1227|consen  100 LVLFPVNSFNHPIWQKIFQELWS---VVAKSLGVSRLARNRLVSHLARRPPNVQPLYGDLG-WVKHVQNGITQIWDPTKT  175 (351)
T ss_pred             EEEEeccccCChhHHHHHHHHHH---hhhhccchhhhhhccccCccccCCCcccccccccc-ceeehhcCeEEEechhhh
Confidence            45555555444444667777766   222222    22333332 2257889999999875 556667899999999987


Q ss_pred             eecChHHHHHHHHHhccCCCCeEEEecCCcchhHH-HHhhcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEe
Q 046527           77 YWNSRLEHEHLRIISQFRPGETICDMFAGIGPFAI-PAAQKGC-IVFANDLNPDSVHYLKINAKVNKVDNYVRAYN  150 (380)
Q Consensus        77 f~n~rl~tE~~r~i~~i~~g~~VLDlfcGvG~fsl-~aA~~g~-~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~  150 (380)
                      +|...-.+|..|+......|++|+|||||.|.|++ ++...|+ .|+|.|.||.+++.+++|++.|++.+++.++.
T Consensus       176 MFS~GN~~EK~Rv~~~sc~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~  251 (351)
T KOG1227|consen  176 MFSRGNIKEKKRVLNTSCDGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANNVMDRCRITE  251 (351)
T ss_pred             hhhcCcHHHHHHhhhcccccchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhh
Confidence            77777778999998888889999999999999999 6666776 99999999999999999999998776554443

>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase

Probab=99.43  E-value=1.6e-12  Score=130.44  Aligned_cols=111  Identities=19%  Similarity=0.252  Sum_probs=89.9

Q ss_pred             eEEEecCCccEEEEEeCC--eEEEEccCceeecChHHHHHH-HHH-hccC-CCCeEEEecCCcchhHHHHhhcCCEEEEE
Q 046527           49 FEILAGEDNMVTEVKQYG--ATFKLDYSLVYWNSRLEHEHL-RII-SQFR-PGETICDMFAGIGPFAIPAAQKGCIVFAN  123 (380)
Q Consensus        49 ~elLaG~~~~~~~v~E~G--~~F~id~~~ff~n~rl~tE~~-r~i-~~i~-~g~~VLDlfcGvG~fsl~aA~~g~~V~av  123 (380)
                      ..+++|.+.+.+.+.-+|  +.|++++..|||.|+.+.+.+ ..+ .... .+.+|||+|||+|.|++++++....|+|+
T Consensus       146 ~~~l~G~~~~~~~~~~~~~~~~~~~~~~~F~Q~N~~~~~~l~~~v~~~~~~~~~~vlDl~~G~G~~sl~la~~~~~v~~v  225 (353)
T TIGR02143       146 KKIVLDQDYVDETLPVAGREFIYRQVENSFTQPNAAVNIKMLEWACEVTQGSKGDLLELYCGNGNFSLALAQNFRRVLAT  225 (353)
T ss_pred             cEEEcCCCEEEEEEecCCeEEEEEECCCCcccCCHHHHHHHHHHHHHHhhcCCCcEEEEeccccHHHHHHHHhCCEEEEE
Confidence            456778776555442245  889999999999998777765 333 2222 23479999999999999999888899999


Q ss_pred             eCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHHHHHH
Q 046527          124 DLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFIRQL  160 (380)
Q Consensus       124 Dlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~l~~l  160 (380)
                      |+++.+++.|++|++.|++++ ++++++|+.+++...
T Consensus       226 E~~~~av~~a~~n~~~~~~~~-v~~~~~d~~~~~~~~  261 (353)
T TIGR02143       226 EIAKPSVNAAQYNIAANNIDN-VQIIRMSAEEFTQAM  261 (353)
T ss_pred             ECCHHHHHHHHHHHHHcCCCc-EEEEEcCHHHHHHHH
Confidence            999999999999999999986 999999999988653

This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.

>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional

Probab=99.39  E-value=5.7e-12  Score=127.82  Aligned_cols=61  Identities=31%  Similarity=0.459  Sum_probs=55.2

Q ss_pred             CCeEEEecCCcchhHHHHhhcCC--EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHHH
Q 046527           96 GETICDMFAGIGPFAIPAAQKGC--IVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFI  157 (380)
Q Consensus        96 g~~VLDlfcGvG~fsl~aA~~g~--~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~l  157 (380)
                      +.+|||+|||+|.+++.+|....  .|+++|+|+.+++.+++|+++|++.+ ++++++|+.+++
T Consensus        58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~-~~v~~~Da~~~l  120 (382)
T PRK04338         58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLEN-EKVFNKDANALL  120 (382)
T ss_pred             CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCc-eEEEhhhHHHHH
Confidence            46999999999999999987533  89999999999999999999999986 789999998775

>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase

Probab=99.39  E-value=3.4e-12  Score=129.06  Aligned_cols=96  Identities=30%  Similarity=0.399  Sum_probs=76.8

Q ss_pred             EeCCeEEEEc-cCceeecChHHHHHHHH------HhccCCC---CeEEEecCCcchhHHHHhhc--CC-EEEEEeCCHHH
Q 046527           63 KQYGATFKLD-YSLVYWNSRLEHEHLRI------ISQFRPG---ETICDMFAGIGPFAIPAAQK--GC-IVFANDLNPDS  129 (380)
Q Consensus        63 ~E~G~~F~id-~~~ff~n~rl~tE~~r~------i~~i~~g---~~VLDlfcGvG~fsl~aA~~--g~-~V~avDlnp~A  129 (380)
                      +|+..+|.+. ...+|+|++....|...      .....++   -+|||+|||+|.+|+.+++.  |+ +|+++|+||.|
T Consensus         2 ~EG~~~i~~p~~~~vFYNP~~~~nRDlsv~~~~~~~~~~~~~~~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~A   81 (374)
T TIGR00308         2 KEGKAEILVPKKETVFYNPRMQFNRDLSVTCIQAFDNLYGKECYINIADALSASGIRAIRYAHEIEGVREVFANDINPKA   81 (374)
T ss_pred             ccceEEEEecCCCCcccCchhhccccHHHHHHHHHHHhhCCcCCCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHH
Confidence            5677777774 24689998877665421      1222344   38999999999999999987  44 99999999999


Q ss_pred             HHHHHHHHHHcCCCCcEEEEeccHHHHHHH
Q 046527          130 VHYLKINAKVNKVDNYVRAYNMDAREFIRQ  159 (380)
Q Consensus       130 ie~a~~Na~lN~l~~ri~~~~~Da~e~l~~  159 (380)
                      ++.+++|+++|++.+ ++++++|+..++..
T Consensus        82 v~~i~~N~~~N~~~~-~~v~~~Da~~~l~~  110 (374)
T TIGR00308        82 VESIKNNVEYNSVEN-IEVPNEDAANVLRY  110 (374)
T ss_pred             HHHHHHHHHHhCCCc-EEEEchhHHHHHHH
Confidence            999999999999985 89999999988754

This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.

>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A

Probab=99.35  E-value=8.8e-12  Score=103.82  Aligned_cols=62  Identities=29%  Similarity=0.449  Sum_probs=58.8

Q ss_pred             CCeEEEecCCcchhHHHHhhcC-CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHHH
Q 046527           96 GETICDMFAGIGPFAIPAAQKG-CIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFI  157 (380)
Q Consensus        96 g~~VLDlfcGvG~fsl~aA~~g-~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~l  157 (380)
                      |.+|||+|||+|.+++.+++.+ .+++++|+||.++++++.|+..+++.++++++++|+.+..
T Consensus         1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~   63 (117)
T PF13659_consen    1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLP   63 (117)
T ss_dssp             TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHH
T ss_pred             CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhch
Confidence            5689999999999999999998 7999999999999999999999999888999999998875

...

>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional

Probab=99.32  E-value=7.1e-11  Score=109.84  Aligned_cols=98  Identities=19%  Similarity=0.229  Sum_probs=71.4

Q ss_pred             ceEEEecCCccEEEEEeCCeEEEEccCceeecChHHHHHH-----HHHhccCCCCeEEEecCCcchhHHHHhhcC-CEEE
Q 046527           48 EFEILAGEDNMVTEVKQYGATFKLDYSLVYWNSRLEHEHL-----RIISQFRPGETICDMFAGIGPFAIPAAQKG-CIVF  121 (380)
Q Consensus        48 ~~elLaG~~~~~~~v~E~G~~F~id~~~ff~n~rl~tE~~-----r~i~~i~~g~~VLDlfcGvG~fsl~aA~~g-~~V~  121 (380)
                      .++++.|.-        .|.++.+.....+   |..++.+     .++....++.+|||+|||+|.+++.++.++ .+|+
T Consensus        12 ~mrIi~g~~--------~g~~l~~~~~~~~---Rp~~d~v~e~l~~~l~~~~~~~~vLDl~~GsG~l~l~~lsr~a~~V~   80 (199)
T PRK10909         12 QIRIIGGQW--------RGRKLPVPDSPGL---RPTTDRVRETLFNWLAPVIVDARCLDCFAGSGALGLEALSRYAAGAT   80 (199)
T ss_pred             CEEEEeecc--------CCCEeCCCCCCCc---CcCCHHHHHHHHHHHhhhcCCCEEEEcCCCccHHHHHHHHcCCCEEE
Confidence            477777752        4555554333222   3333443     222233567899999999999999765554 5999


Q ss_pred             EEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHHH
Q 046527          122 ANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFI  157 (380)
Q Consensus       122 avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~l  157 (380)
                      ++|+++++++.+++|++.+++.+ ++++++|+.+++
T Consensus        81 ~vE~~~~a~~~a~~Nl~~~~~~~-v~~~~~D~~~~l  115 (199)
T PRK10909         81 LLEMDRAVAQQLIKNLATLKAGN-ARVVNTNALSFL  115 (199)
T ss_pred             EEECCHHHHHHHHHHHHHhCCCc-EEEEEchHHHHH
Confidence            99999999999999999999875 999999998765

>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=99.25  E-value=1.2e-10  Score=106.95  Aligned_cols=62  Identities=32%  Similarity=0.397  Sum_probs=55.0

Q ss_pred             cCCCCeEEEecCCcchhHHHHhhcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHH
Q 046527           93 FRPGETICDMFAGIGPFAIPAAQKGC-IVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREF  156 (380)
Q Consensus        93 i~~g~~VLDlfcGvG~fsl~aA~~g~-~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~  156 (380)
                      .-.|.+|+|+|||+|.+++.++..|+ +|+|+|++|++++.+++|+..  +.+.+.++.+|+.++
T Consensus        43 ~l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~--l~g~v~f~~~dv~~~  105 (198)
T COG2263          43 DLEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEE--LLGDVEFVVADVSDF  105 (198)
T ss_pred             CcCCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHh--hCCceEEEEcchhhc
Confidence            34678999999999999999999986 999999999999999999988  344599999998764

>COG4123 Predicted O-methyltransferase [General function prediction only]

Probab=99.25  E-value=3e-11  Score=115.61  Aligned_cols=68  Identities=18%  Similarity=0.342  Sum_probs=61.8

Q ss_pred             ccCCCCeEEEecCCcchhHHHHhhc-C-CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHHHHH
Q 046527           92 QFRPGETICDMFAGIGPFAIPAAQK-G-CIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFIRQ  159 (380)
Q Consensus        92 ~i~~g~~VLDlfcGvG~fsl~aA~~-g-~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~l~~  159 (380)
                      ......+|||+|||+|.+++.+|++ . ++|++||+++++++.|++|+++|+++++++++++|+.++.+.
T Consensus        41 ~~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~  110 (248)
T COG4123          41 PVPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKA  110 (248)
T ss_pred             ccccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhc
Confidence            3445789999999999999999988 4 699999999999999999999999999999999999988644

>TIGR00095 RNA methyltransferase, RsmD family

Probab=99.22  E-value=1.8e-10  Score=106.10  Aligned_cols=68  Identities=22%  Similarity=0.273  Sum_probs=62.3

Q ss_pred             cCCCCeEEEecCCcchhHHHHhhcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHHHHHH
Q 046527           93 FRPGETICDMFAGIGPFAIPAAQKGC-IVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFIRQL  160 (380)
Q Consensus        93 i~~g~~VLDlfcGvG~fsl~aA~~g~-~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~l~~l  160 (380)
                      .-+|.+|||+|||+|.+++.++.+|+ .|++||.++.+++.+++|++.|++.++++++++|+.+++..+
T Consensus        47 ~~~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~  115 (189)
T TIGR00095        47 EIQGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFL  115 (189)
T ss_pred             hcCCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHh
Confidence            34689999999999999999999987 899999999999999999999999877999999998887554

This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.

>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases

Probab=99.17  E-value=2.9e-10  Score=102.41  Aligned_cols=86  Identities=24%  Similarity=0.277  Sum_probs=65.8

Q ss_pred             eEEEEccCceeecCh-HHHHHH-HHHhccCCCCeEEEecCCcchhHHHHhhcCC--EEEEEeCCHHHHHHHHHHHHHcCC
Q 046527           67 ATFKLDYSLVYWNSR-LEHEHL-RIISQFRPGETICDMFAGIGPFAIPAAQKGC--IVFANDLNPDSVHYLKINAKVNKV  142 (380)
Q Consensus        67 ~~F~id~~~ff~n~r-l~tE~~-r~i~~i~~g~~VLDlfcGvG~fsl~aA~~g~--~V~avDlnp~Aie~a~~Na~lN~l  142 (380)
                      ++|...++-|-+..- ..++.+ ..+... ++.+|||+|||+|.+++.+++.+.  +|+++|+|+.|++.+++|++.|++
T Consensus         2 ~~~~~~~gvFs~~~~d~~t~lL~~~l~~~-~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~   80 (170)
T PF05175_consen    2 LEFITHPGVFSPPRLDAGTRLLLDNLPKH-KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGL   80 (170)
T ss_dssp             EEEEEETTSTTTTSHHHHHHHHHHHHHHH-TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTC
T ss_pred             EEEEECCCeeCCCCCCHHHHHHHHHHhhc-cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCc
Confidence            356666665532221 233333 222222 678999999999999999999865  699999999999999999999999


Q ss_pred             CCcEEEEeccHH
Q 046527          143 DNYVRAYNMDAR  154 (380)
Q Consensus       143 ~~ri~~~~~Da~  154 (380)
                      ++ ++++..|..
T Consensus        81 ~~-v~~~~~d~~   91 (170)
T PF05175_consen   81 EN-VEVVQSDLF   91 (170)
T ss_dssp             TT-EEEEESSTT
T ss_pred             cc-ccccccccc
Confidence            98 999988864

; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....

>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific

Probab=99.12  E-value=3.6e-10  Score=110.31  Aligned_cols=89  Identities=24%  Similarity=0.289  Sum_probs=71.2

Q ss_pred             CCeEEEEccCceeecChHHHHH-H-HHHh-cc--CCCCeEEEecCCcchhHHHHhhc--CCEEEEEeCCHHHHHHHHHHH
Q 046527           65 YGATFKLDYSLVYWNSRLEHEH-L-RIIS-QF--RPGETICDMFAGIGPFAIPAAQK--GCIVFANDLNPDSVHYLKINA  137 (380)
Q Consensus        65 ~G~~F~id~~~ff~n~rl~tE~-~-r~i~-~i--~~g~~VLDlfcGvG~fsl~aA~~--g~~V~avDlnp~Aie~a~~Na  137 (380)
                      .|..|.+++..|+  +|..++. + ..+. .+  .++.+|||+|||+|.+++.+++.  +.+|+|+|+|+.+++.|++|+
T Consensus        88 ~g~~f~v~~~vli--pr~~te~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~  165 (284)
T TIGR03533        88 AGLEFYVDERVLI--PRSPIAELIEDGFAPWLEPEPVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINI  165 (284)
T ss_pred             cCcEEEECCCCcc--CCCchHHHHHHHHHHHhccCCCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHH
Confidence            6889999998766  4433333 2 2222 12  34579999999999999999986  359999999999999999999


Q ss_pred             HHcCCCCcEEEEeccHHH
Q 046527          138 KVNKVDNYVRAYNMDARE  155 (380)
Q Consensus       138 ~lN~l~~ri~~~~~Da~e  155 (380)
                      +.|++.++++++++|+.+
T Consensus       166 ~~~~~~~~i~~~~~D~~~  183 (284)
T TIGR03533       166 ERHGLEDRVTLIQSDLFA  183 (284)
T ss_pred             HHcCCCCcEEEEECchhh
Confidence            999998789999999854

Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.

>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional

Probab=99.12  E-value=4.5e-09  Score=107.52  Aligned_cols=87  Identities=23%  Similarity=0.341  Sum_probs=72.7

Q ss_pred             CCeEEEEccCceeecChHHHHHH--HHHhccCCCCeEEEecCCcchhHHHHhhc--CCEEEEEeCCHHHHHHHHHHHHHc
Q 046527           65 YGATFKLDYSLVYWNSRLEHEHL--RIISQFRPGETICDMFAGIGPFAIPAAQK--GCIVFANDLNPDSVHYLKINAKVN  140 (380)
Q Consensus        65 ~G~~F~id~~~ff~n~rl~tE~~--r~i~~i~~g~~VLDlfcGvG~fsl~aA~~--g~~V~avDlnp~Aie~a~~Na~lN  140 (380)
                      .|..|.+++..+.  +|..+|.+  .++..+.++.+|||+|||+|.+++.+++.  +++|+|+|+|+.+++.|++|++.+
T Consensus       221 ~G~~f~V~p~vLI--PRpeTE~LVe~aL~~l~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~  298 (423)
T PRK14966        221 YGRRFAVNPNVLI--PRPETEHLVEAVLARLPENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADL  298 (423)
T ss_pred             cCcEEEeCCCccC--CCccHHHHHHHhhhccCCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc
Confidence            7889999998755  77777765  23345667789999999999999998865  469999999999999999999988


Q ss_pred             CCCCcEEEEeccHHH
Q 046527          141 KVDNYVRAYNMDARE  155 (380)
Q Consensus       141 ~l~~ri~~~~~Da~e  155 (380)
                      +.  +++++++|+.+
T Consensus       299 g~--rV~fi~gDl~e  311 (423)
T PRK14966        299 GA--RVEFAHGSWFD  311 (423)
T ss_pred             CC--cEEEEEcchhc
Confidence            75  58999998754

>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH

Probab=99.12  E-value=6.6e-10  Score=102.06  Aligned_cols=68  Identities=25%  Similarity=0.411  Sum_probs=59.3

Q ss_pred             CCCCeEEEecCCcchhHHHHhhcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHHHHHHh
Q 046527           94 RPGETICDMFAGIGPFAIPAAQKGC-IVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFIRQLM  161 (380)
Q Consensus        94 ~~g~~VLDlfcGvG~fsl~aA~~g~-~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~l~~l~  161 (380)
                      -+|.+|||||||+|.+|+.++.+|+ +|+.||.|+.++..+++|++..++.++++++++|+..++.++.
T Consensus        41 ~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~  109 (183)
T PF03602_consen   41 LEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLA  109 (183)
T ss_dssp             HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHH
T ss_pred             cCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhc
Confidence            5789999999999999999999987 9999999999999999999999999889999999999987764

They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.

>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]

Probab=99.11  E-value=5.4e-10  Score=102.77  Aligned_cols=68  Identities=28%  Similarity=0.373  Sum_probs=62.7

Q ss_pred             cCCCCeEEEecCCcchhHHHHhhcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHHHHHH
Q 046527           93 FRPGETICDMFAGIGPFAIPAAQKGC-IVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFIRQL  160 (380)
Q Consensus        93 i~~g~~VLDlfcGvG~fsl~aA~~g~-~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~l~~l  160 (380)
                      .-.|.++||+|||+|++++.|+.+|+ +|+.||.|..++..+++|++..++..+++++.+|+..+++++
T Consensus        41 ~i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~  109 (187)
T COG0742          41 EIEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQL  109 (187)
T ss_pred             ccCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhc
Confidence            36789999999999999999999987 999999999999999999999998888999999999776655

>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific

Probab=99.11  E-value=5.4e-10  Score=107.18  Aligned_cols=87  Identities=18%  Similarity=0.204  Sum_probs=67.8

Q ss_pred             CCeEEEEccCceeecChHHHHHH-HHH-hcc---CCCCeEEEecCCcchhHHHHhhc--CCEEEEEeCCHHHHHHHHHHH
Q 046527           65 YGATFKLDYSLVYWNSRLEHEHL-RII-SQF---RPGETICDMFAGIGPFAIPAAQK--GCIVFANDLNPDSVHYLKINA  137 (380)
Q Consensus        65 ~G~~F~id~~~ff~n~rl~tE~~-r~i-~~i---~~g~~VLDlfcGvG~fsl~aA~~--g~~V~avDlnp~Aie~a~~Na  137 (380)
                      .|..|.+++..|+  |+..++.+ +.+ ..+   ..+.+|||+|||+|.+++.+++.  +.+|+++|+|+.+++.|++|+
T Consensus        53 ~g~~~~v~~~vf~--pr~~Te~Lv~~~l~~~~~~~~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~  130 (251)
T TIGR03704        53 CGLRIAVDPGVFV--PRRRTEFLVDEAAALARPRSGTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNL  130 (251)
T ss_pred             cCeEEEECCCCcC--CCccHHHHHHHHHHhhcccCCCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH
Confidence            6889999998765  56566654 222 222   23458999999999999999875  459999999999999999999


Q ss_pred             HHcCCCCcEEEEeccHHHHH
Q 046527          138 KVNKVDNYVRAYNMDAREFI  157 (380)
Q Consensus       138 ~lN~l~~ri~~~~~Da~e~l  157 (380)
                      +.|++    +++++|+.+.+
T Consensus       131 ~~~~~----~~~~~D~~~~l  146 (251)
T TIGR03704       131 ADAGG----TVHEGDLYDAL  146 (251)
T ss_pred             HHcCC----EEEEeechhhc
Confidence            98873    67888886543

This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.

>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]

Probab=99.09  E-value=3.6e-10  Score=110.25  Aligned_cols=87  Identities=29%  Similarity=0.321  Sum_probs=68.1

Q ss_pred             CCeEEEEccCceeecChHHHHHHH-H-HhccCCCC-eEEEecCCcchhHHHHhhcCC--EEEEEeCCHHHHHHHHHHHHH
Q 046527           65 YGATFKLDYSLVYWNSRLEHEHLR-I-ISQFRPGE-TICDMFAGIGPFAIPAAQKGC--IVFANDLNPDSVHYLKINAKV  139 (380)
Q Consensus        65 ~G~~F~id~~~ff~n~rl~tE~~r-~-i~~i~~g~-~VLDlfcGvG~fsl~aA~~g~--~V~avDlnp~Aie~a~~Na~l  139 (380)
                      .|..|.++...  +.+|..||.+- . +....... +|||+|||+|.+++.+|+.+.  +|+|+|+||+|++.|++|++.
T Consensus        79 ~gl~~~v~~~v--liPr~dTe~Lve~~l~~~~~~~~~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~  156 (280)
T COG2890          79 GGLRFKVDEGV--LIPRPDTELLVEAALALLLQLDKRILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAER  156 (280)
T ss_pred             cceeeeeCCCc--eecCCchHHHHHHHHHhhhhcCCcEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHH
Confidence            78888888876  45676777652 2 12333333 799999999999999999875  999999999999999999999


Q ss_pred             cCCCCcEEEEeccHH
Q 046527          140 NKVDNYVRAYNMDAR  154 (380)
Q Consensus       140 N~l~~ri~~~~~Da~  154 (380)
                      |++ .++.++++|..
T Consensus       157 ~~l-~~~~~~~~dlf  170 (280)
T COG2890         157 NGL-VRVLVVQSDLF  170 (280)
T ss_pred             cCC-ccEEEEeeecc
Confidence            999 44666665554

>TIGR00536 hemK_fam HemK family putative methylases

Probab=99.05  E-value=7.9e-10  Score=107.59  Aligned_cols=89  Identities=27%  Similarity=0.363  Sum_probs=72.0

Q ss_pred             CCeEEEEccCceeecChHHHHHH--HHHhcc---CCCCeEEEecCCcchhHHHHhhcC--CEEEEEeCCHHHHHHHHHHH
Q 046527           65 YGATFKLDYSLVYWNSRLEHEHL--RIISQF---RPGETICDMFAGIGPFAIPAAQKG--CIVFANDLNPDSVHYLKINA  137 (380)
Q Consensus        65 ~G~~F~id~~~ff~n~rl~tE~~--r~i~~i---~~g~~VLDlfcGvG~fsl~aA~~g--~~V~avDlnp~Aie~a~~Na  137 (380)
                      .|..|.+++..+.  +|..+|.+  ..+..+   .++.+|||+|||+|.+++.++...  .+|+|+|+++.+++.|++|+
T Consensus        81 ~g~~f~v~~~vli--Pr~ete~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~  158 (284)
T TIGR00536        81 YGLEFFVNEHVLI--PRPETEELVEKALASLISQNPILHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENA  158 (284)
T ss_pred             cCeEEEECCCCcC--CCCccHHHHHHHHHHhhhcCCCCEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHH
Confidence            6889999988644  66666654  222222   223689999999999999999864  59999999999999999999


Q ss_pred             HHcCCCCcEEEEeccHHH
Q 046527          138 KVNKVDNYVRAYNMDARE  155 (380)
Q Consensus       138 ~lN~l~~ri~~~~~Da~e  155 (380)
                      +.+++.++++++++|+.+
T Consensus       159 ~~~~~~~~v~~~~~d~~~  176 (284)
T TIGR00536       159 EKNQLEHRVEFIQSNLFE  176 (284)
T ss_pred             HHcCCCCcEEEEECchhc
Confidence            999998779999999754

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.

>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.05  E-value=1e-09  Score=108.31  Aligned_cols=89  Identities=24%  Similarity=0.276  Sum_probs=70.7

Q ss_pred             CCeEEEEccCceeecChHHHHHH--HHHhc-cCC--CCeEEEecCCcchhHHHHhhc--CCEEEEEeCCHHHHHHHHHHH
Q 046527           65 YGATFKLDYSLVYWNSRLEHEHL--RIISQ-FRP--GETICDMFAGIGPFAIPAAQK--GCIVFANDLNPDSVHYLKINA  137 (380)
Q Consensus        65 ~G~~F~id~~~ff~n~rl~tE~~--r~i~~-i~~--g~~VLDlfcGvG~fsl~aA~~--g~~V~avDlnp~Aie~a~~Na  137 (380)
                      .|..|.+++..|+  +|..++.+  ..+.. +..  ..+|||+|||+|.+++.++..  +.+|+++|+|+.+++.|++|+
T Consensus       100 ~g~~f~v~~~vli--pr~~te~lv~~~l~~~~~~~~~~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~  177 (307)
T PRK11805        100 CGLEFYVDERVLV--PRSPIAELIEDGFAPWLEDPPVTRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINI  177 (307)
T ss_pred             cCcEEEECCCCcC--CCCchHHHHHHHHHHHhccCCCCEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHH
Confidence            6889999987755  44444332  22222 222  268999999999999999986  359999999999999999999


Q ss_pred             HHcCCCCcEEEEeccHHH
Q 046527          138 KVNKVDNYVRAYNMDARE  155 (380)
Q Consensus       138 ~lN~l~~ri~~~~~Da~e  155 (380)
                      +.+++.++++++++|+.+
T Consensus       178 ~~~~l~~~i~~~~~D~~~  195 (307)
T PRK11805        178 ERHGLEDRVTLIESDLFA  195 (307)
T ss_pred             HHhCCCCcEEEEECchhh
Confidence            999998889999999865

>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences

Probab=99.03  E-value=1.1e-09  Score=107.77  Aligned_cols=84  Identities=25%  Similarity=0.407  Sum_probs=68.9

Q ss_pred             CCeEEEEccCceeecChHHHHHH--HHHh-ccCCCCeEEEecCCcchhHHHHhhcCC-EEEEEeCCHHHHHHHHHHHHHc
Q 046527           65 YGATFKLDYSLVYWNSRLEHEHL--RIIS-QFRPGETICDMFAGIGPFAIPAAQKGC-IVFANDLNPDSVHYLKINAKVN  140 (380)
Q Consensus        65 ~G~~F~id~~~ff~n~rl~tE~~--r~i~-~i~~g~~VLDlfcGvG~fsl~aA~~g~-~V~avDlnp~Aie~a~~Na~lN  140 (380)
                      +.....+||+..|-.-...|-++  +.+. ...+|++|||+|||+|.+++.+++.|+ +|+|+|++|.|++.|++|+++|
T Consensus       128 ~~~~I~idPg~AFGTG~H~TT~lcl~~l~~~~~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N  207 (295)
T PF06325_consen  128 DEIVIEIDPGMAFGTGHHPTTRLCLELLEKYVKPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELN  207 (295)
T ss_dssp             TSEEEEESTTSSS-SSHCHHHHHHHHHHHHHSSTTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHT
T ss_pred             CcEEEEECCCCcccCCCCHHHHHHHHHHHHhccCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHc
Confidence            56778999998888766666554  4443 357889999999999999999999998 8999999999999999999999


Q ss_pred             CCCCcEEE
Q 046527          141 KVDNYVRA  148 (380)
Q Consensus       141 ~l~~ri~~  148 (380)
                      ++.+++.+
T Consensus       208 ~~~~~~~v  215 (295)
T PF06325_consen  208 GVEDRIEV  215 (295)
T ss_dssp             T-TTCEEE
T ss_pred             CCCeeEEE
Confidence            99987654

Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=99.01  E-value=1.5e-09  Score=89.47  Aligned_cols=59  Identities=24%  Similarity=0.394  Sum_probs=55.8

Q ss_pred             CCCeEEEecCCcchhHHHHhh--cCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccH
Q 046527           95 PGETICDMFAGIGPFAIPAAQ--KGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDA  153 (380)
Q Consensus        95 ~g~~VLDlfcGvG~fsl~aA~--~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da  153 (380)
                      ||.+|||+|||+|.+++.+++  .+++|+|+|++|.+++.|++++...+..++++++++|+
T Consensus         1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~   61 (112)
T PF12847_consen    1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDA   61 (112)
T ss_dssp             TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCC
T ss_pred             CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECcc
Confidence            578999999999999999999  68899999999999999999998888888899999998

...

>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase

Probab=98.99  E-value=1.1e-08  Score=98.83  Aligned_cols=65  Identities=26%  Similarity=0.249  Sum_probs=58.0

Q ss_pred             hccCCCCeEEEecCCcchhHHHHhhc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHH
Q 046527           91 SQFRPGETICDMFAGIGPFAIPAAQK---GCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREF  156 (380)
Q Consensus        91 ~~i~~g~~VLDlfcGvG~fsl~aA~~---g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~  156 (380)
                      ..+.+|++|||+|||.|..++.++..   ...|+|+|+++..++.+++|++.+++.+ ++++++|+..+
T Consensus        67 l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~-v~~~~~D~~~~  134 (264)
T TIGR00446        67 LEPDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLN-VAVTNFDGRVF  134 (264)
T ss_pred             hCCCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCc-EEEecCCHHHh
Confidence            45678999999999999999998875   2489999999999999999999999976 99999998754

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=98.99  E-value=1.4e-08  Score=93.66  Aligned_cols=64  Identities=25%  Similarity=0.195  Sum_probs=57.2

Q ss_pred             hccCCCCeEEEecCCcchhHHHHhhc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHH
Q 046527           91 SQFRPGETICDMFAGIGPFAIPAAQK--GCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDARE  155 (380)
Q Consensus        91 ~~i~~g~~VLDlfcGvG~fsl~aA~~--g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e  155 (380)
                      ..+.++.+|||+|||+|.+++.+++.  +++|+++|.++.+++.|++|++.+++.+ ++++++|+.+
T Consensus        41 ~~l~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~-i~~~~~d~~~  106 (187)
T PRK00107         41 PYLPGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKN-VTVVHGRAEE  106 (187)
T ss_pred             hhcCCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCC-EEEEeccHhh
Confidence            44566899999999999999988863  5699999999999999999999999987 9999999865

>PRK14967 putative methyltransferase; Provisional

Probab=98.99  E-value=7.5e-09  Score=97.01  Aligned_cols=62  Identities=29%  Similarity=0.392  Sum_probs=55.2

Q ss_pred             ccCCCCeEEEecCCcchhHHHHhhcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHH
Q 046527           92 QFRPGETICDMFAGIGPFAIPAAQKGC-IVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDARE  155 (380)
Q Consensus        92 ~i~~g~~VLDlfcGvG~fsl~aA~~g~-~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e  155 (380)
                      .+.++++|||+|||+|.+++.+++.+. +|+++|+++.+++.+++|+..+++  +++++++|+.+
T Consensus        33 ~~~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~--~~~~~~~d~~~   95 (223)
T PRK14967         33 GLGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGV--DVDVRRGDWAR   95 (223)
T ss_pred             ccCCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCC--eeEEEECchhh
Confidence            357789999999999999999998776 999999999999999999999887  37888888754

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=98.96  E-value=2.5e-08  Score=91.79  Aligned_cols=66  Identities=24%  Similarity=0.312  Sum_probs=58.3

Q ss_pred             ccCCCCeEEEecCCcchhHHHHhhc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHHH
Q 046527           92 QFRPGETICDMFAGIGPFAIPAAQK---GCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFI  157 (380)
Q Consensus        92 ~i~~g~~VLDlfcGvG~fsl~aA~~---g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~l  157 (380)
                      .+.++.+|||+|||+|.+++.+++.   +.+|+++|+++.+++.+++|++.+++.+++.++++|+.+++
T Consensus        37 ~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l  105 (198)
T PRK00377         37 RLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEIL  105 (198)
T ss_pred             CCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhH
Confidence            4678899999999999999998864   35899999999999999999999997666999999987764

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=98.96  E-value=2.5e-09  Score=112.34  Aligned_cols=89  Identities=21%  Similarity=0.228  Sum_probs=73.5

Q ss_pred             CCeEEEEccCceeecChHHHHHH-H-HHhccC--------------------------CCCeEEEecCCcchhHHHHhhc
Q 046527           65 YGATFKLDYSLVYWNSRLEHEHL-R-IISQFR--------------------------PGETICDMFAGIGPFAIPAAQK  116 (380)
Q Consensus        65 ~G~~F~id~~~ff~n~rl~tE~~-r-~i~~i~--------------------------~g~~VLDlfcGvG~fsl~aA~~  116 (380)
                      .|..|.++++.  +.||..||.+ . ++..+.                          ++.+|||+|||+|.+++.++..
T Consensus        82 ~g~~f~V~~~V--LIPRpeTE~Lve~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VLDlG~GsG~iai~la~~  159 (506)
T PRK01544         82 YSREFIVNKHV--LIPRSDTEVLVDVVFQCHSRESGNPEKKQLNPCFRGNDISSNCNDKFLNILELGTGSGCIAISLLCE  159 (506)
T ss_pred             cCcEEEeCCCc--ccCCCcHHHHHHHHHHHhhhccccccccccccccccccccccccCCCCEEEEccCchhHHHHHHHHH
Confidence            78999999986  5788888865 2 222211                          3468999999999999998865


Q ss_pred             --CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHH
Q 046527          117 --GCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDARE  155 (380)
Q Consensus       117 --g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e  155 (380)
                        +++|+|+|+|+.+++.|++|++.+++.+++.++++|+.+
T Consensus       160 ~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~  200 (506)
T PRK01544        160 LPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFE  200 (506)
T ss_pred             CCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhh
Confidence              469999999999999999999999998889999999754

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=98.95  E-value=1e-08  Score=100.05  Aligned_cols=89  Identities=20%  Similarity=0.240  Sum_probs=71.0

Q ss_pred             eCCeEEEEccCceeecChHHHHHH--HHHh-ccCCCCeEEEecCCcchhHHHHhhcCC-EEEEEeCCHHHHHHHHHHHHH
Q 046527           64 QYGATFKLDYSLVYWNSRLEHEHL--RIIS-QFRPGETICDMFAGIGPFAIPAAQKGC-IVFANDLNPDSVHYLKINAKV  139 (380)
Q Consensus        64 E~G~~F~id~~~ff~n~rl~tE~~--r~i~-~i~~g~~VLDlfcGvG~fsl~aA~~g~-~V~avDlnp~Aie~a~~Na~l  139 (380)
                      ++.....++|+..|-.-...+..+  +.+. ...++++|||+|||+|.+++.+++.|+ +|+|+|+++.+++.+++|+..
T Consensus       125 ~~~~~i~ldpg~aFgtG~h~tt~l~l~~l~~~~~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~  204 (288)
T TIGR00406       125 EDALIIMLDPGLAFGTGTHPTTSLCLEWLEDLDLKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAEL  204 (288)
T ss_pred             CCcEEEEECCCCcccCCCCHHHHHHHHHHHhhcCCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHH
Confidence            356788999998887644444432  3332 345789999999999999999998876 899999999999999999999


Q ss_pred             cCCCCcEEEEecc
Q 046527          140 NKVDNYVRAYNMD  152 (380)
Q Consensus       140 N~l~~ri~~~~~D  152 (380)
                      |++.+++.+..+|
T Consensus       205 n~~~~~~~~~~~~  217 (288)
T TIGR00406       205 NQVSDRLQVKLIY  217 (288)
T ss_pred             cCCCcceEEEecc
Confidence            9998767666554

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>TIGR00537 hemK_rel_arch HemK-related putative methylase

Probab=98.94  E-value=9.3e-09  Score=92.93  Aligned_cols=61  Identities=30%  Similarity=0.324  Sum_probs=54.1

Q ss_pred             cCCCCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHH
Q 046527           93 FRPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDARE  155 (380)
Q Consensus        93 i~~g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e  155 (380)
                      ..++.+|||+|||+|.+++.++..+.+|+++|+++.+++.+++|++.+++  .++++++|+.+
T Consensus        17 ~~~~~~vLdlG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~   77 (179)
T TIGR00537        17 ELKPDDVLEIGAGTGLVAIRLKGKGKCILTTDINPFAVKELRENAKLNNV--GLDVVMTDLFK   77 (179)
T ss_pred             hcCCCeEEEeCCChhHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHcCC--ceEEEEccccc
Confidence            44567899999999999999999888999999999999999999999987  37888888644

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.

>PTZ00338 dimethyladenosine transferase-like protein; Provisional

Probab=98.88  E-value=9.8e-09  Score=100.91  Aligned_cols=90  Identities=18%  Similarity=0.230  Sum_probs=69.3

Q ss_pred             CeEEEEccCceeecChHHHHHHHHHhccCCCCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCc
Q 046527           66 GATFKLDYSLVYWNSRLEHEHLRIISQFRPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKVDNY  145 (380)
Q Consensus        66 G~~F~id~~~ff~n~rl~tE~~r~i~~i~~g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~lN~l~~r  145 (380)
                      |.+.+-.++.-|..+....+.+.....+.++++|||+|||.|.++..++..+.+|+|+|+|+++++.+++++..++..++
T Consensus         7 ~~~~kk~~GQnFL~d~~i~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~~~~V~avEiD~~li~~l~~~~~~~~~~~~   86 (294)
T PTZ00338          7 GMVFNKKFGQHILKNPLVLDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQLAKKVIAIEIDPRMVAELKKRFQNSPLASK   86 (294)
T ss_pred             CcCcCCCCCccccCCHHHHHHHHHhcCCCCcCEEEEecCchHHHHHHHHHhCCcEEEEECCHHHHHHHHHHHHhcCCCCc
Confidence            33333344444544443334333334567899999999999999999999888999999999999999999988776566


Q ss_pred             EEEEeccHHH
Q 046527          146 VRAYNMDARE  155 (380)
Q Consensus       146 i~~~~~Da~e  155 (380)
                      ++++++|+.+
T Consensus        87 v~ii~~Dal~   96 (294)
T PTZ00338         87 LEVIEGDALK   96 (294)
T ss_pred             EEEEECCHhh
Confidence            9999999865

>PRK07402 precorrin-6B methylase; Provisional

Probab=98.88  E-value=4.4e-08  Score=89.85  Aligned_cols=65  Identities=23%  Similarity=0.301  Sum_probs=57.5

Q ss_pred             ccCCCCeEEEecCCcchhHHHHhhc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHHH
Q 046527           92 QFRPGETICDMFAGIGPFAIPAAQK--GCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFI  157 (380)
Q Consensus        92 ~i~~g~~VLDlfcGvG~fsl~aA~~--g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~l  157 (380)
                      .+.++.+|||+|||+|.+++.+++.  +.+|+++|+++++++.+++|++.+++.+ ++++++|+.+.+
T Consensus        37 ~~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~-v~~~~~d~~~~~  103 (196)
T PRK07402         37 RLEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKN-VEVIEGSAPECL  103 (196)
T ss_pred             CCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCC-eEEEECchHHHH
Confidence            4567899999999999999999865  4699999999999999999999999865 999999997644

>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific

Probab=98.88  E-value=1.4e-07  Score=88.61  Aligned_cols=88  Identities=26%  Similarity=0.371  Sum_probs=66.7

Q ss_pred             CCeEEEEccCceeecChHHHHHH--HHHhccC-CCCeEEEecCCcchhHHHHhhc--CCEEEEEeCCHHHHHHHHHHHHH
Q 046527           65 YGATFKLDYSLVYWNSRLEHEHL--RIISQFR-PGETICDMFAGIGPFAIPAAQK--GCIVFANDLNPDSVHYLKINAKV  139 (380)
Q Consensus        65 ~G~~F~id~~~ff~n~rl~tE~~--r~i~~i~-~g~~VLDlfcGvG~fsl~aA~~--g~~V~avDlnp~Aie~a~~Na~l  139 (380)
                      .+..|.++...+.  ++..++.+  .++..+. .+.+|||+|||+|.+++.++..  +..|+++|+++.+++.+++|+..
T Consensus        56 ~~~~~~~~~~~~~--p~~~~~~l~~~~l~~~~~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~  133 (251)
T TIGR03534        56 YGLDFKVSPGVLI--PRPDTEELVEAALERLKKGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAAR  133 (251)
T ss_pred             eceEEEECCCccc--CCCChHHHHHHHHHhcccCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHH
Confidence            5667777766543  33333332  2233332 3458999999999999999986  45999999999999999999999


Q ss_pred             cCCCCcEEEEeccHHH
Q 046527          140 NKVDNYVRAYNMDARE  155 (380)
Q Consensus       140 N~l~~ri~~~~~Da~e  155 (380)
                      +++.+ +.++++|+.+
T Consensus       134 ~~~~~-~~~~~~d~~~  148 (251)
T TIGR03534       134 LGLDN-VTFLQSDWFE  148 (251)
T ss_pred             cCCCe-EEEEECchhc
Confidence            99874 8999998754

Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.

>TIGR01177 conserved hypothetical protein TIGR01177

Probab=98.85  E-value=1.9e-08  Score=99.91  Aligned_cols=64  Identities=25%  Similarity=0.344  Sum_probs=58.8

Q ss_pred             hccCCCCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHH
Q 046527           91 SQFRPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDARE  155 (380)
Q Consensus        91 ~~i~~g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e  155 (380)
                      ..+.+|++|||+|||+|.+.+.++..++.|+|+|+++.+++.++.|++.+++.+ +.++++|+.+
T Consensus       178 ~~~~~g~~vLDp~cGtG~~lieaa~~~~~v~g~Di~~~~~~~a~~nl~~~g~~~-i~~~~~D~~~  241 (329)
T TIGR01177       178 ARVTEGDRVLDPFCGTGGFLIEAGLMGAKVIGCDIDWKMVAGARINLEHYGIED-FFVKRGDATK  241 (329)
T ss_pred             hCCCCcCEEEECCCCCCHHHHHHHHhCCeEEEEcCCHHHHHHHHHHHHHhCCCC-CeEEecchhc
Confidence            457889999999999999999999989999999999999999999999999987 8888888754

This family is found exclusively in the Archaea.

>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

Probab=98.84  E-value=1.1e-08  Score=100.53  Aligned_cols=80  Identities=28%  Similarity=0.393  Sum_probs=66.0

Q ss_pred             CCeEEEEccCceeecChHHHHHH--HHHh-ccCCCCeEEEecCCcchhHHHHhhcCC-EEEEEeCCHHHHHHHHHHHHHc
Q 046527           65 YGATFKLDYSLVYWNSRLEHEHL--RIIS-QFRPGETICDMFAGIGPFAIPAAQKGC-IVFANDLNPDSVHYLKINAKVN  140 (380)
Q Consensus        65 ~G~~F~id~~~ff~n~rl~tE~~--r~i~-~i~~g~~VLDlfcGvG~fsl~aA~~g~-~V~avDlnp~Aie~a~~Na~lN  140 (380)
                      +-+..++||+-.|-.-...|..+  +++. ...+|++|||+|||+|.+++.+++.|+ +|+|+|++|.|++.+++|+++|
T Consensus       129 ~~~~i~lDPGlAFGTG~HpTT~lcL~~Le~~~~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N  208 (300)
T COG2264         129 DELNIELDPGLAFGTGTHPTTSLCLEALEKLLKKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLN  208 (300)
T ss_pred             CceEEEEccccccCCCCChhHHHHHHHHHHhhcCCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHHc
Confidence            46778999998776544333332  3332 356899999999999999999999998 7999999999999999999999


Q ss_pred             CCCC
Q 046527          141 KVDN  144 (380)
Q Consensus       141 ~l~~  144 (380)
                      ++..
T Consensus       209 ~v~~  212 (300)
T COG2264         209 GVEL  212 (300)
T ss_pred             CCch
Confidence            9985

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=98.83  E-value=5.1e-08  Score=99.00  Aligned_cols=91  Identities=16%  Similarity=0.150  Sum_probs=63.2

Q ss_pred             EEeCCeEEEEccCceeecChHHHHHHHHHhccC--CCCeEEEecCCcchhHHHHhhcC--CEEEEEeCCHHHHHHHHHHH
Q 046527           62 VKQYGATFKLDYSLVYWNSRLEHEHLRIISQFR--PGETICDMFAGIGPFAIPAAQKG--CIVFANDLNPDSVHYLKINA  137 (380)
Q Consensus        62 v~E~G~~F~id~~~ff~n~rl~tE~~r~i~~i~--~g~~VLDlfcGvG~fsl~aA~~g--~~V~avDlnp~Aie~a~~Na  137 (380)
                      +.+.++.|.-.++ +|--.++..-.+..+..+.  .+.+|||+|||+|.+++.+++++  .+|+++|.|+.|++.+++|+
T Consensus       194 ~~~~~~~~~~~~g-VFs~~~LD~GtrllL~~lp~~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~  272 (378)
T PRK15001        194 LEGTDWTIHNHAN-VFSRTGLDIGARFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNV  272 (378)
T ss_pred             EcCceEEEEecCC-ccCCCCcChHHHHHHHhCCcccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH
Confidence            4333334433344 4444444433333333333  24599999999999999999874  59999999999999999999


Q ss_pred             HHcCCC--CcEEEEeccH
Q 046527          138 KVNKVD--NYVRAYNMDA  153 (380)
Q Consensus       138 ~lN~l~--~ri~~~~~Da  153 (380)
                      +.|+..  .+++++.+|+
T Consensus       273 ~~n~~~~~~~v~~~~~D~  290 (378)
T PRK15001        273 ETNMPEALDRCEFMINNA  290 (378)
T ss_pred             HHcCcccCceEEEEEccc
Confidence            999864  2578887775

>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase

Probab=98.82  E-value=5.6e-08  Score=89.41  Aligned_cols=64  Identities=17%  Similarity=0.171  Sum_probs=57.3

Q ss_pred             CCCeEEEecCCcchhHHHHhhcC--CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHHHHH
Q 046527           95 PGETICDMFAGIGPFAIPAAQKG--CIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFIRQ  159 (380)
Q Consensus        95 ~g~~VLDlfcGvG~fsl~aA~~g--~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~l~~  159 (380)
                      ...+|||+|||+|.+++.+|+..  ..|+|+|+++.+++.|++++..+++.+ ++++++|+.+++..
T Consensus        16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~n-i~~i~~d~~~~~~~   81 (194)
T TIGR00091        16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKN-LHVLCGDANELLDK   81 (194)
T ss_pred             CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCC-EEEEccCHHHHHHh
Confidence            45699999999999999999873  489999999999999999999999985 99999999987643

In E. coli, this protein flanks the DNA repair protein MutY, also called micA.

>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated

Probab=98.82  E-value=2.3e-07  Score=84.38  Aligned_cols=61  Identities=26%  Similarity=0.288  Sum_probs=54.7

Q ss_pred             ccCCCCeEEEecCCcchhHHHHhhcC--CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccH
Q 046527           92 QFRPGETICDMFAGIGPFAIPAAQKG--CIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDA  153 (380)
Q Consensus        92 ~i~~g~~VLDlfcGvG~fsl~aA~~g--~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da  153 (380)
                      .+.++.+|||+|||+|.+++.+++.+  .+|+++|+++.+++.|++|++.+++.+ ++++++|+
T Consensus        28 ~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~-i~~~~~d~   90 (187)
T PRK08287         28 ELHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGN-IDIIPGEA   90 (187)
T ss_pred             CCCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCC-eEEEecCc
Confidence            45688899999999999999999864  499999999999999999999998865 89998875

>PRK14902 16S rRNA methyltransferase B; Provisional

Probab=98.82  E-value=5.7e-08  Score=100.29  Aligned_cols=66  Identities=24%  Similarity=0.257  Sum_probs=58.8

Q ss_pred             HhccCCCCeEEEecCCcchhHHHHhhc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHH
Q 046527           90 ISQFRPGETICDMFAGIGPFAIPAAQK---GCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREF  156 (380)
Q Consensus        90 i~~i~~g~~VLDlfcGvG~fsl~aA~~---g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~  156 (380)
                      +..+.+|++|||+|||+|.+++.++..   ..+|+|+|+++.+++.+++|++.+|+.+ ++++++|+.+.
T Consensus       245 ~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~-v~~~~~D~~~~  313 (444)
T PRK14902        245 ALDPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTN-IETKALDARKV  313 (444)
T ss_pred             HhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCe-EEEEeCCcccc
Confidence            345678899999999999999999975   3599999999999999999999999987 99999998764

>TIGR00138 gidB 16S rRNA methyltransferase GidB

Probab=98.81  E-value=5.7e-08  Score=88.86  Aligned_cols=61  Identities=25%  Similarity=0.262  Sum_probs=54.8

Q ss_pred             CCCeEEEecCCcchhHHHHhhcC--CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHH
Q 046527           95 PGETICDMFAGIGPFAIPAAQKG--CIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREF  156 (380)
Q Consensus        95 ~g~~VLDlfcGvG~fsl~aA~~g--~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~  156 (380)
                      ++.+|||+|||+|.+++.++..+  ++|+++|.++.+++.+++|++.+++.+ ++++++|+.++
T Consensus        42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~-i~~i~~d~~~~  104 (181)
T TIGR00138        42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNN-VEIVNGRAEDF  104 (181)
T ss_pred             CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCC-eEEEecchhhc
Confidence            48899999999999999988654  589999999999999999999999876 99999998763

GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.

>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]

Probab=98.81  E-value=2.1e-08  Score=98.31  Aligned_cols=87  Identities=20%  Similarity=0.234  Sum_probs=61.8

Q ss_pred             CCeEEEEccCceeecChHHHHHHHHHhcc--CCCCeEEEecCCcchhHHHHhhcCC--EEEEEeCCHHHHHHHHHHHHHc
Q 046527           65 YGATFKLDYSLVYWNSRLEHEHLRIISQF--RPGETICDMFAGIGPFAIPAAQKGC--IVFANDLNPDSVHYLKINAKVN  140 (380)
Q Consensus        65 ~G~~F~id~~~ff~n~rl~tE~~r~i~~i--~~g~~VLDlfcGvG~fsl~aA~~g~--~V~avDlnp~Aie~a~~Na~lN  140 (380)
                      .+++|.=+++-|-+ .++..-.+.++..+  ..+..|||+|||.|.+|+.+|+...  +|+.+|.|..|++.+++|++.|
T Consensus       127 ~~~~~~t~pGVFS~-~~lD~GS~lLl~~l~~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N  205 (300)
T COG2813         127 HELTFKTLPGVFSR-DKLDKGSRLLLETLPPDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAAN  205 (300)
T ss_pred             CceEEEeCCCCCcC-CCcChHHHHHHHhCCccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHc
Confidence            34555555554443 33322222223322  3344999999999999999999864  9999999999999999999999


Q ss_pred             CCCCcEEEEeccH
Q 046527          141 KVDNYVRAYNMDA  153 (380)
Q Consensus       141 ~l~~ri~~~~~Da  153 (380)
                      ++++. .++..|.
T Consensus       206 ~~~~~-~v~~s~~  217 (300)
T COG2813         206 GVENT-EVWASNL  217 (300)
T ss_pred             CCCcc-EEEEecc
Confidence            99974 5565443

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=98.81  E-value=1.5e-07  Score=89.91  Aligned_cols=83  Identities=29%  Similarity=0.401  Sum_probs=63.2

Q ss_pred             eCCeEEEEccCceeecChHHHHH--HHHH-hccCCCCeEEEecCCcchhHHHHhhcCC-EEEEEeCCHHHHHHHHHHHHH
Q 046527           64 QYGATFKLDYSLVYWNSRLEHEH--LRII-SQFRPGETICDMFAGIGPFAIPAAQKGC-IVFANDLNPDSVHYLKINAKV  139 (380)
Q Consensus        64 E~G~~F~id~~~ff~n~rl~tE~--~r~i-~~i~~g~~VLDlfcGvG~fsl~aA~~g~-~V~avDlnp~Aie~a~~Na~l  139 (380)
                      +......++++-.|......+..  ++.+ ....++.+|||+|||+|.+++.+++.|+ +|+|+|+++.+++.|++|++.
T Consensus        85 ~~~~~i~i~p~~afgtg~h~tt~~~l~~l~~~~~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~  164 (250)
T PRK00517         85 PDEINIELDPGMAFGTGTHPTTRLCLEALEKLVLPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAEL  164 (250)
T ss_pred             CCeEEEEECCCCccCCCCCHHHHHHHHHHHhhcCCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHH
Confidence            34556788888766653333222  2233 2356889999999999999999988877 699999999999999999999


Q ss_pred             cCCCCcE
Q 046527          140 NKVDNYV  146 (380)
Q Consensus       140 N~l~~ri  146 (380)
                      |++.+.+
T Consensus       165 ~~~~~~~  171 (250)
T PRK00517        165 NGVELNV  171 (250)
T ss_pred             cCCCceE
Confidence            9885433

>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]

Probab=98.81  E-value=9.3e-09  Score=92.94  Aligned_cols=65  Identities=29%  Similarity=0.354  Sum_probs=55.7

Q ss_pred             CeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHHHHHHh
Q 046527           97 ETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFIRQLM  161 (380)
Q Consensus        97 ~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~l~~l~  161 (380)
                      ++|+|+|||+|.-++.+|+.+.+|+|+|++|.-+++|++|++.-|+.++|.++++|..+.++.+.
T Consensus         1 ~~vlD~fcG~GGNtIqFA~~~~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~   65 (163)
T PF09445_consen    1 TTVLDAFCGVGGNTIQFARTFDRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLK   65 (163)
T ss_dssp             SEEEETT-TTSHHHHHHHHTT-EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB-
T ss_pred             CEEEEeccCcCHHHHHHHHhCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhcc
Confidence            47999999999999999999999999999999999999999999999999999999999876543

Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.

>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase

Probab=98.78  E-value=1.2e-08  Score=93.21  Aligned_cols=67  Identities=33%  Similarity=0.604  Sum_probs=52.9

Q ss_pred             HhccCCCCeEEEecCCcchhHHHHhhcCC--E---------EEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHH
Q 046527           90 ISQFRPGETICDMFAGIGPFAIPAAQKGC--I---------VFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREF  156 (380)
Q Consensus        90 i~~i~~g~~VLDlfcGvG~fsl~aA~~g~--~---------V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~  156 (380)
                      ++.+.+|++|||.|||+|++.+.+|..+.  .         ++|.|+++.+++.+++|++..++.+.+.+.+.|+.++
T Consensus        23 la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~~~l  100 (179)
T PF01170_consen   23 LAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDAREL  100 (179)
T ss_dssp             HTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--GGGG
T ss_pred             HhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecchhhc
Confidence            35678899999999999999999987644  4         7899999999999999999999998899998888654

It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.

>PRK14968 putative methyltransferase; Provisional

Probab=98.78  E-value=7.9e-08  Score=86.20  Aligned_cols=61  Identities=34%  Similarity=0.446  Sum_probs=55.2

Q ss_pred             CCCCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCc-EEEEeccHH
Q 046527           94 RPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKVDNY-VRAYNMDAR  154 (380)
Q Consensus        94 ~~g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~lN~l~~r-i~~~~~Da~  154 (380)
                      .++.+|||+|||+|.+++.++..+.+|+++|+++.+++.+++|+..+++.++ +.++++|+.
T Consensus        22 ~~~~~vLd~G~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~   83 (188)
T PRK14968         22 KKGDRVLEVGTGSGIVAIVAAKNGKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLF   83 (188)
T ss_pred             cCCCEEEEEccccCHHHHHHHhhcceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEecccc
Confidence            6788999999999999999999988999999999999999999999988754 778887753

>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional

Probab=98.76  E-value=3.1e-08  Score=95.26  Aligned_cols=76  Identities=16%  Similarity=0.228  Sum_probs=59.0

Q ss_pred             eecChHHHHHHHHHhccCCCCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHH
Q 046527           77 YWNSRLEHEHLRIISQFRPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDARE  155 (380)
Q Consensus        77 f~n~rl~tE~~r~i~~i~~g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e  155 (380)
                      |..++...+.......+.++++|||+|||+|.++..+++.+.+|+++|+++.+++.+++++..  . ++++++++|+.+
T Consensus        11 fl~d~~~~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~~~~v~~vEid~~~~~~l~~~~~~--~-~~v~ii~~D~~~   86 (258)
T PRK14896         11 FLIDDRVVDRIVEYAEDTDGDPVLEIGPGKGALTDELAKRAKKVYAIELDPRLAEFLRDDEIA--A-GNVEIIEGDALK   86 (258)
T ss_pred             ccCCHHHHHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHhCCEEEEEECCHHHHHHHHHHhcc--C-CCEEEEEecccc
Confidence            443443333332233466889999999999999999999988999999999999999998854  2 358999998753

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=98.75  E-value=1.9e-07  Score=77.71  Aligned_cols=63  Identities=33%  Similarity=0.493  Sum_probs=54.8

Q ss_pred             ccCCCCeEEEecCCcchhHHHHhhc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHH
Q 046527           92 QFRPGETICDMFAGIGPFAIPAAQK--GCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDARE  155 (380)
Q Consensus        92 ~i~~g~~VLDlfcGvG~fsl~aA~~--g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e  155 (380)
                      .+.++++|||+|||.|.++..+++.  +.+|+++|+++.+++.+++|++.+++.+ ++++.+|+..
T Consensus        16 ~~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-~~~~~~~~~~   80 (124)
T TIGR02469        16 RLRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSN-IVIVEGDAPE   80 (124)
T ss_pred             CCCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCc-eEEEeccccc
Confidence            3456789999999999999999986  3599999999999999999999988875 8888887653

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>PLN02672 methionine S-methyltransferase

Probab=98.74  E-value=4.9e-08  Score=109.78  Aligned_cols=91  Identities=22%  Similarity=0.214  Sum_probs=72.2

Q ss_pred             CCeEEEEccCceeecChHHHHHH-HHHhccC----CCCeEEEecCCcchhHHHHhhcC--CEEEEEeCCHHHHHHHHHHH
Q 046527           65 YGATFKLDYSLVYWNSRLEHEHL-RIISQFR----PGETICDMFAGIGPFAIPAAQKG--CIVFANDLNPDSVHYLKINA  137 (380)
Q Consensus        65 ~G~~F~id~~~ff~n~rl~tE~~-r~i~~i~----~g~~VLDlfcGvG~fsl~aA~~g--~~V~avDlnp~Aie~a~~Na  137 (380)
                      .|+.|.++++.  +.+|..+|.+ ..+....    ++.+|||+|||+|.+++.+++..  ++|+|+|+|++|++.|++|+
T Consensus        85 ~~l~~~V~p~V--LIPRpeTE~lve~L~~~~~~~~~~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na  162 (1082)
T PLN02672         85 KKLTMMEIPSI--FIPEDWSFTFYEGLNRHPDSIFRDKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINL  162 (1082)
T ss_pred             cCCceeeCCCc--ccCchhHHHHHHHHHhcccccCCCCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHH
Confidence            78888888885  5677777765 2232221    34689999999999999999864  59999999999999999999


Q ss_pred             HHcCCC---------------CcEEEEeccHHHHH
Q 046527          138 KVNKVD---------------NYVRAYNMDAREFI  157 (380)
Q Consensus       138 ~lN~l~---------------~ri~~~~~Da~e~l  157 (380)
                      +.|+++               ++++++++|+.+.+
T Consensus       163 ~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~  197 (1082)
T PLN02672        163 YLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYC  197 (1082)
T ss_pred             HHcCcccccccccccccccccccEEEEECchhhhc
Confidence            998653               46899999987654

>smart00650 rADc Ribosomal RNA adenine dimethylases

Probab=98.74  E-value=3.4e-08  Score=88.67  Aligned_cols=62  Identities=21%  Similarity=0.356  Sum_probs=54.0

Q ss_pred             ccCCCCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHH
Q 046527           92 QFRPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREF  156 (380)
Q Consensus        92 ~i~~g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~  156 (380)
                      .+.++++|||+|||+|.++..+++++.+|+++|+++.+++.+++|+..  . ++++++++|+.++
T Consensus        10 ~~~~~~~vLEiG~G~G~lt~~l~~~~~~v~~vE~~~~~~~~~~~~~~~--~-~~v~ii~~D~~~~   71 (169)
T smart00650       10 NLRPGDTVLEIGPGKGALTEELLERAARVTAIEIDPRLAPRLREKFAA--A-DNLTVIHGDALKF   71 (169)
T ss_pred             CCCCcCEEEEECCCccHHHHHHHhcCCeEEEEECCHHHHHHHHHHhcc--C-CCEEEEECchhcC
Confidence            356788999999999999999999988999999999999999999854  2 3589999998654

>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional

Probab=98.74  E-value=1.9e-07  Score=93.74  Aligned_cols=86  Identities=12%  Similarity=0.162  Sum_probs=64.3

Q ss_pred             CCeEEEEccCceeecCh-HHHHHH-HHHhccCCCCeEEEecCCcchhHHHHhhcC--CEEEEEeCCHHHHHHHHHHHHHc
Q 046527           65 YGATFKLDYSLVYWNSR-LEHEHL-RIISQFRPGETICDMFAGIGPFAIPAAQKG--CIVFANDLNPDSVHYLKINAKVN  140 (380)
Q Consensus        65 ~G~~F~id~~~ff~n~r-l~tE~~-r~i~~i~~g~~VLDlfcGvG~fsl~aA~~g--~~V~avDlnp~Aie~a~~Na~lN  140 (380)
                      .++.+...++.|++... ..++.+ ..+.. ....+|||+|||+|.+++.+++.+  .+|+++|+++.|++.+++|++.|
T Consensus       165 ~~l~i~~~pgvFs~~~lD~gt~lLl~~l~~-~~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n  243 (342)
T PRK09489        165 DGLTVKTLPGVFSRDGLDVGSQLLLSTLTP-HTKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAAN  243 (342)
T ss_pred             CCEEEEeCCCCCCCCCCCHHHHHHHHhccc-cCCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc
Confidence            56778888888887543 222322 21221 234589999999999999999874  49999999999999999999999


Q ss_pred             CCCCcEEEEeccH
Q 046527          141 KVDNYVRAYNMDA  153 (380)
Q Consensus       141 ~l~~ri~~~~~Da  153 (380)
                      ++..  +++.+|+
T Consensus       244 ~l~~--~~~~~D~  254 (342)
T PRK09489        244 GLEG--EVFASNV  254 (342)
T ss_pred             CCCC--EEEEccc
Confidence            9864  5666665

>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed

Probab=98.73  E-value=1.6e-07  Score=87.10  Aligned_cols=62  Identities=16%  Similarity=0.139  Sum_probs=55.0

Q ss_pred             CCCeEEEecCCcchhHHHHhhcC--CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHHH
Q 046527           95 PGETICDMFAGIGPFAIPAAQKG--CIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFI  157 (380)
Q Consensus        95 ~g~~VLDlfcGvG~fsl~aA~~g--~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~l  157 (380)
                      ++.+|||+|||+|.++..+++..  .+|+|+|+++.+++.|++|++.+++.+ ++++++|+.+.+
T Consensus        40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~-v~~~~~d~~~~l  103 (202)
T PRK00121         40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTN-LRLLCGDAVEVL  103 (202)
T ss_pred             CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCC-EEEEecCHHHHH
Confidence            57899999999999999998763  589999999999999999999999865 999999994443

>PRK14904 16S rRNA methyltransferase B; Provisional

Probab=98.73  E-value=1.3e-07  Score=97.72  Aligned_cols=65  Identities=23%  Similarity=0.263  Sum_probs=57.0

Q ss_pred             hccCCCCeEEEecCCcchhHHHHhhc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHH
Q 046527           91 SQFRPGETICDMFAGIGPFAIPAAQK---GCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREF  156 (380)
Q Consensus        91 ~~i~~g~~VLDlfcGvG~fsl~aA~~---g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~  156 (380)
                      ....+|++|||+|||+|..++.++..   +.+|+|+|+++.+++.+++|++.+|+.+ ++++++|+.++
T Consensus       246 l~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~-v~~~~~Da~~~  313 (445)
T PRK14904        246 LNPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITI-IETIEGDARSF  313 (445)
T ss_pred             cCCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCe-EEEEeCccccc
Confidence            34578899999999999999988864   3599999999999999999999999975 99999998654

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]

Probab=98.73  E-value=3.1e-08  Score=91.01  Aligned_cols=69  Identities=30%  Similarity=0.380  Sum_probs=62.6

Q ss_pred             hccCCCCeEEEecCCcchhHHHHhhcC--CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHHHHHH
Q 046527           91 SQFRPGETICDMFAGIGPFAIPAAQKG--CIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFIRQL  160 (380)
Q Consensus        91 ~~i~~g~~VLDlfcGvG~fsl~aA~~g--~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~l~~l  160 (380)
                      ..+.+|+++||+|||+|.+++.+|..+  ++|+|+|.++++++..++|++..+++| ++++.+|+.+.+..+
T Consensus        30 L~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n-~~vv~g~Ap~~L~~~  100 (187)
T COG2242          30 LRPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDN-LEVVEGDAPEALPDL  100 (187)
T ss_pred             hCCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCc-EEEEeccchHhhcCC
Confidence            356899999999999999999999543  599999999999999999999999876 999999999998755

>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=98.73  E-value=5.1e-07  Score=86.37  Aligned_cols=86  Identities=24%  Similarity=0.314  Sum_probs=65.9

Q ss_pred             CCeEEEEccCceeecChHHHHHH-HHHh---ccCCCCeEEEecCCcchhHHHHhhcC--CEEEEEeCCHHHHHHHHHHHH
Q 046527           65 YGATFKLDYSLVYWNSRLEHEHL-RIIS---QFRPGETICDMFAGIGPFAIPAAQKG--CIVFANDLNPDSVHYLKINAK  138 (380)
Q Consensus        65 ~G~~F~id~~~ff~n~rl~tE~~-r~i~---~i~~g~~VLDlfcGvG~fsl~aA~~g--~~V~avDlnp~Aie~a~~Na~  138 (380)
                      .|..|.++...+  .+|..+|.+ ..+.   ...++.+|||+|||+|.+++.++...  .+|+++|+++.+++.+++|+.
T Consensus        76 ~~~~~~~~~~~l--ipr~~te~l~~~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~  153 (275)
T PRK09328         76 WGLDFKVSPGVL--IPRPETEELVEWALEALLLKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAK  153 (275)
T ss_pred             cCcEEEECCCce--eCCCCcHHHHHHHHHhccccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH
Confidence            567788777643  455555554 2221   23567899999999999999999875  699999999999999999998


Q ss_pred             HcCCCCcEEEEeccH
Q 046527          139 VNKVDNYVRAYNMDA  153 (380)
Q Consensus       139 lN~l~~ri~~~~~Da  153 (380)
                       ++...++.++++|+
T Consensus       154 -~~~~~~i~~~~~d~  167 (275)
T PRK09328        154 -HGLGARVEFLQGDW  167 (275)
T ss_pred             -hCCCCcEEEEEccc
Confidence             44444689998876

>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

Probab=98.71  E-value=7.2e-08  Score=92.35  Aligned_cols=66  Identities=20%  Similarity=0.161  Sum_probs=59.7

Q ss_pred             hccCCCCeEEEecCCcchhHHHHhhc-C--CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHH
Q 046527           91 SQFRPGETICDMFAGIGPFAIPAAQK-G--CIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREF  156 (380)
Q Consensus        91 ~~i~~g~~VLDlfcGvG~fsl~aA~~-g--~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~  156 (380)
                      ..+.+|++|+|.|.|+|.++..+|.. |  .+|+++|+.++.++.|++|++..++.+++++..+|+.+.
T Consensus        90 ~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~  158 (256)
T COG2519          90 LGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREG  158 (256)
T ss_pred             cCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEecccccc
Confidence            56889999999999999999999964 3  399999999999999999999999999899998888764

>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]

Probab=98.71  E-value=1.4e-07  Score=95.32  Aligned_cols=67  Identities=25%  Similarity=0.490  Sum_probs=59.9

Q ss_pred             HhccCCCCeEEEecCCcchhHHHHhhcCC-----------------------------------------EEEEEeCCHH
Q 046527           90 ISQFRPGETICDMFAGIGPFAIPAAQKGC-----------------------------------------IVFANDLNPD  128 (380)
Q Consensus        90 i~~i~~g~~VLDlfcGvG~fsl~aA~~g~-----------------------------------------~V~avDlnp~  128 (380)
                      ++...+++.++|.+||+|+|.|.+|..+.                                         .++|+|+++.
T Consensus       186 lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r  265 (381)
T COG0116         186 LAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPR  265 (381)
T ss_pred             HcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHH
Confidence            35677889999999999999999998763                                         2779999999


Q ss_pred             HHHHHHHHHHHcCCCCcEEEEeccHHHH
Q 046527          129 SVHYLKINAKVNKVDNYVRAYNMDAREF  156 (380)
Q Consensus       129 Aie~a~~Na~lN~l~~ri~~~~~Da~e~  156 (380)
                      +++.|+.|+...|+.+.|++.++|+..+
T Consensus       266 ~i~~Ak~NA~~AGv~d~I~f~~~d~~~l  293 (381)
T COG0116         266 HIEGAKANARAAGVGDLIEFKQADATDL  293 (381)
T ss_pred             HHHHHHHHHHhcCCCceEEEEEcchhhC
Confidence            9999999999999999999999998654

>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A

Probab=98.69  E-value=4.8e-08  Score=85.75  Aligned_cols=61  Identities=23%  Similarity=0.354  Sum_probs=54.6

Q ss_pred             CCCCeEEEecCCcchhHHHHhh-c--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHH
Q 046527           94 RPGETICDMFAGIGPFAIPAAQ-K--GCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDARE  155 (380)
Q Consensus        94 ~~g~~VLDlfcGvG~fsl~aA~-~--g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e  155 (380)
                      +++.+|||+|||+|.++..++. .  +.+|+|+|+|+.+++.|+.+++.+++. +++++++|+.+
T Consensus         2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~-ni~~~~~d~~~   65 (152)
T PF13847_consen    2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLD-NIEFIQGDIED   65 (152)
T ss_dssp             TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTST-TEEEEESBTTC
T ss_pred             CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccccccc-ccceEEeehhc
Confidence            4678999999999999999994 3  569999999999999999999999999 49999999976

...

>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=98.69  E-value=2.2e-07  Score=88.69  Aligned_cols=64  Identities=22%  Similarity=0.223  Sum_probs=59.1

Q ss_pred             CCCCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHHH
Q 046527           94 RPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFI  157 (380)
Q Consensus        94 ~~g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~l  157 (380)
                      .++.+|||+|||+|.+++.+++.+.+|+++|+++.+++.|++++...++.++++++++|+.++.
T Consensus        43 ~~~~~vLDiGcG~G~~a~~la~~g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~  106 (255)
T PRK11036         43 PRPLRVLDAGGGEGQTAIKLAELGHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIA  106 (255)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHh
Confidence            4567999999999999999999999999999999999999999999998877999999998863

>KOG2730 consensus Methylase [General function prediction only]

Probab=98.69  E-value=4.9e-08  Score=91.71  Aligned_cols=93  Identities=24%  Similarity=0.268  Sum_probs=75.4

Q ss_pred             EEccCceee-cChHHHHHHHH-HhccCCCCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEE
Q 046527           70 KLDYSLVYW-NSRLEHEHLRI-ISQFRPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKVDNYVR  147 (380)
Q Consensus        70 ~id~~~ff~-n~rl~tE~~r~-i~~i~~g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~  147 (380)
                      .++....|| .+...++++.. +.....-++|+|.|||+|+-++..|.+++.|+++|++|.-+.+|++|++.-|+.+||+
T Consensus        67 ~md~e~wfsvTpe~ia~~iA~~v~~~~~~~~iidaf~g~gGntiqfa~~~~~VisIdiDPikIa~AkhNaeiYGI~~rIt  146 (263)
T KOG2730|consen   67 YMDREGWFSVTPEKIAEHIANRVVACMNAEVIVDAFCGVGGNTIQFALQGPYVIAIDIDPVKIACARHNAEVYGVPDRIT  146 (263)
T ss_pred             eecccceEEeccHHHHHHHHHHHHHhcCcchhhhhhhcCCchHHHHHHhCCeEEEEeccHHHHHHHhccceeecCCceeE
Confidence            445555555 34444555422 1222256799999999999999999999999999999999999999999999999999


Q ss_pred             EEeccHHHHHHHHhc
Q 046527          148 AYNMDAREFIRQLMT  162 (380)
Q Consensus       148 ~~~~Da~e~l~~l~~  162 (380)
                      +++||..+....+..
T Consensus       147 FI~GD~ld~~~~lq~  161 (263)
T KOG2730|consen  147 FICGDFLDLASKLKA  161 (263)
T ss_pred             EEechHHHHHHHHhh
Confidence            999999999887763

>PRK14901 16S rRNA methyltransferase B; Provisional

Probab=98.68  E-value=3.3e-07  Score=94.51  Aligned_cols=65  Identities=23%  Similarity=0.259  Sum_probs=58.3

Q ss_pred             hccCCCCeEEEecCCcchhHHHHhhcC---CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHH
Q 046527           91 SQFRPGETICDMFAGIGPFAIPAAQKG---CIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREF  156 (380)
Q Consensus        91 ~~i~~g~~VLDlfcGvG~fsl~aA~~g---~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~  156 (380)
                      ....+|++|||+|||+|..++.++...   .+|+|+|+++..++.+++|++.+|+.+ ++++++|+.+.
T Consensus       248 l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~-v~~~~~D~~~~  315 (434)
T PRK14901        248 LDPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKS-IKILAADSRNL  315 (434)
T ss_pred             hCCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCe-EEEEeCChhhc
Confidence            456789999999999999999998752   489999999999999999999999987 99999998754

>PRK14903 16S rRNA methyltransferase B; Provisional

Probab=98.68  E-value=6.2e-07  Score=92.57  Aligned_cols=80  Identities=16%  Similarity=0.208  Sum_probs=65.0

Q ss_pred             eeecChHHHHHHHHHhccCCCCeEEEecCCcchhHHHHhhc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEecc
Q 046527           76 VYWNSRLEHEHLRIISQFRPGETICDMFAGIGPFAIPAAQK---GCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMD  152 (380)
Q Consensus        76 ff~n~rl~tE~~r~i~~i~~g~~VLDlfcGvG~fsl~aA~~---g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~D  152 (380)
                      .|..+..+......+..+.+|++|||+|||.|..+++++..   +.+|+|+|+++..++.+++|++..|+.+ ++++++|
T Consensus       218 ~~~~Qd~~s~~~~~~l~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~-v~~~~~D  296 (431)
T PRK14903        218 LATVQGESSQIVPLLMELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSS-IEIKIAD  296 (431)
T ss_pred             eEEEECHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCe-EEEEECc
Confidence            34444444433333456788999999999999999998875   4599999999999999999999999976 8999999


Q ss_pred             HHHH
Q 046527          153 AREF  156 (380)
Q Consensus       153 a~e~  156 (380)
                      +.++
T Consensus       297 a~~l  300 (431)
T PRK14903        297 AERL  300 (431)
T ss_pred             hhhh
Confidence            8765

>PRK12335 tellurite resistance protein TehB; Provisional

Probab=98.68  E-value=4.2e-07  Score=88.56  Aligned_cols=83  Identities=22%  Similarity=0.175  Sum_probs=61.9

Q ss_pred             EEEccCceeecCh----HHHHHHHHHhccCCCCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCC
Q 046527           69 FKLDYSLVYWNSR----LEHEHLRIISQFRPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKVDN  144 (380)
Q Consensus        69 F~id~~~ff~n~r----l~tE~~r~i~~i~~g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~lN~l~~  144 (380)
                      |...+..+|+...    ...+.+..+..+ ++.+|||+|||+|.+++.+++.|.+|+|+|+|+.+++.++++++.+++ +
T Consensus        91 fy~~~~~~f~~~~~~~~~~~~~~~~~~~~-~~~~vLDlGcG~G~~~~~la~~g~~V~avD~s~~ai~~~~~~~~~~~l-~  168 (287)
T PRK12335         91 FYCKPEDYFHKKYNLTATHSEVLEAVQTV-KPGKALDLGCGQGRNSLYLALLGFDVTAVDINQQSLENLQEIAEKENL-N  168 (287)
T ss_pred             EEEcchhhHhhhhccccccHHHHHHhhcc-CCCCEEEeCCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCC-c
Confidence            5555555555432    112222333333 445999999999999999999999999999999999999999999988 3


Q ss_pred             cEEEEeccHH
Q 046527          145 YVRAYNMDAR  154 (380)
Q Consensus       145 ri~~~~~Da~  154 (380)
                       +++...|+.
T Consensus       169 -v~~~~~D~~  177 (287)
T PRK12335        169 -IRTGLYDIN  177 (287)
T ss_pred             -eEEEEechh
Confidence             777777654

>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional

Probab=98.68  E-value=2e-07  Score=94.75  Aligned_cols=63  Identities=14%  Similarity=0.224  Sum_probs=57.5

Q ss_pred             CCCeEEEecCCcchhHHHHhhcC--CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHHHH
Q 046527           95 PGETICDMFAGIGPFAIPAAQKG--CIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFIR  158 (380)
Q Consensus        95 ~g~~VLDlfcGvG~fsl~aA~~g--~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~l~  158 (380)
                      .+..+||+|||+|.+++.+|+..  ..++|+|+++.+++.|.+++..+++.| +.++++|+..++.
T Consensus       122 ~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~N-V~~i~~DA~~ll~  186 (390)
T PRK14121        122 QEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKN-LLIINYDARLLLE  186 (390)
T ss_pred             CCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCc-EEEEECCHHHhhh
Confidence            45799999999999999999874  599999999999999999999999987 9999999987763

>PRK10901 16S rRNA methyltransferase B; Provisional

Probab=98.67  E-value=3.9e-07  Score=93.73  Aligned_cols=63  Identities=19%  Similarity=0.165  Sum_probs=56.1

Q ss_pred             hccCCCCeEEEecCCcchhHHHHhhcC--CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHH
Q 046527           91 SQFRPGETICDMFAGIGPFAIPAAQKG--CIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDARE  155 (380)
Q Consensus        91 ~~i~~g~~VLDlfcGvG~fsl~aA~~g--~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e  155 (380)
                      ....+|++|||+|||+|..++.++..+  .+|+|+|+++.+++.+++|++.+++.  ++++++|+.+
T Consensus       240 l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~--~~~~~~D~~~  304 (427)
T PRK10901        240 LAPQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLK--ATVIVGDARD  304 (427)
T ss_pred             cCCCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCC--eEEEEcCccc
Confidence            356789999999999999999999864  49999999999999999999999985  6789999865

>PRK11727 23S rRNA mA1618 methyltransferase; Provisional

Probab=98.63  E-value=1.6e-07  Score=93.43  Aligned_cols=61  Identities=13%  Similarity=0.172  Sum_probs=51.7

Q ss_pred             CCCeEEEecCCcchhHHHHhhc--CCEEEEEeCCHHHHHHHHHHHHHc-CCCCcEEEEe-ccHHH
Q 046527           95 PGETICDMFAGIGPFAIPAAQK--GCIVFANDLNPDSVHYLKINAKVN-KVDNYVRAYN-MDARE  155 (380)
Q Consensus        95 ~g~~VLDlfcGvG~fsl~aA~~--g~~V~avDlnp~Aie~a~~Na~lN-~l~~ri~~~~-~Da~e  155 (380)
                      ++.++||+|||+|.+...++.+  +.+++|+|+++.|++.|++|++.| ++.++|++.. .|...
T Consensus       114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~  178 (321)
T PRK11727        114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKA  178 (321)
T ss_pred             CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhh
Confidence            4579999999999888877765  569999999999999999999999 8998888864 44443

>PHA03412 putative methyltransferase; Provisional

Probab=98.62  E-value=3e-07  Score=87.80  Aligned_cols=54  Identities=20%  Similarity=0.178  Sum_probs=45.5

Q ss_pred             CCCeEEEecCCcchhHHHHhhc-----CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHH
Q 046527           95 PGETICDMFAGIGPFAIPAAQK-----GCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAR  154 (380)
Q Consensus        95 ~g~~VLDlfcGvG~fsl~aA~~-----g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~  154 (380)
                      .+.+|||+|||+|.+++.++++     ..+|+++|+++.++++|++|+.      .+.++++|+.
T Consensus        49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~------~~~~~~~D~~  107 (241)
T PHA03412         49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVP------EATWINADAL  107 (241)
T ss_pred             CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhcc------CCEEEEcchh
Confidence            4679999999999999998864     3489999999999999998852      2678887765

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=98.60  E-value=2.2e-07  Score=86.62  Aligned_cols=64  Identities=19%  Similarity=0.179  Sum_probs=57.4

Q ss_pred             hccCCCCeEEEecCCcchhHHHHhhcCC---EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHH
Q 046527           91 SQFRPGETICDMFAGIGPFAIPAAQKGC---IVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDARE  155 (380)
Q Consensus        91 ~~i~~g~~VLDlfcGvG~fsl~aA~~g~---~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e  155 (380)
                      ..+.++++|||+|||+|.++..+++...   +|+++|+++++++.|++|++.+++.+ ++++++|+.+
T Consensus        73 l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~-v~~~~~d~~~  139 (215)
T TIGR00080        73 LELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDN-VIVIVGDGTQ  139 (215)
T ss_pred             hCCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCC-eEEEECCccc
Confidence            3577899999999999999999998743   59999999999999999999999865 9999999865

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB

Probab=98.58  E-value=7.1e-07  Score=91.78  Aligned_cols=77  Identities=16%  Similarity=0.007  Sum_probs=59.1

Q ss_pred             eecChHHHHHHHHHhccCCCCeEEEecCCcchhHHHHhhc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccH
Q 046527           77 YWNSRLEHEHLRIISQFRPGETICDMFAGIGPFAIPAAQK--GCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDA  153 (380)
Q Consensus        77 f~n~rl~tE~~r~i~~i~~g~~VLDlfcGvG~fsl~aA~~--g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da  153 (380)
                      |..+..+...........+|++|||+|||.|..++.++..  .++|+|+|+++..++.+++|++.+|+...+++..+|+
T Consensus       220 ~~~Qd~~s~~~~~~L~~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~  298 (426)
T TIGR00563       220 VTVQDASAQWVATWLAPQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDG  298 (426)
T ss_pred             EEEECHHHHHHHHHhCCCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecccc
Confidence            3344433333333345678999999999999999999975  2599999999999999999999999874444466654

The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=98.58  E-value=1.4e-07  Score=91.78  Aligned_cols=66  Identities=26%  Similarity=0.454  Sum_probs=54.3

Q ss_pred             hccCCCCeEEEecCCcchhHHHHhhc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHH
Q 046527           91 SQFRPGETICDMFAGIGPFAIPAAQK-GCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREF  156 (380)
Q Consensus        91 ~~i~~g~~VLDlfcGvG~fsl~aA~~-g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~  156 (380)
                      ..+++|++|||+|||.|.+++.+|++ |++|+|+.+|++.++++++.++..|+.+++++..+|.+++
T Consensus        58 ~~l~~G~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~  124 (273)
T PF02353_consen   58 LGLKPGDRVLDIGCGWGGLAIYAAERYGCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDL  124 (273)
T ss_dssp             TT--TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG-
T ss_pred             hCCCCCCEEEEeCCCccHHHHHHHHHcCcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeecccc
Confidence            45789999999999999999999998 9999999999999999999999999999999999998765

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase

Probab=98.57  E-value=3.9e-07  Score=84.82  Aligned_cols=64  Identities=25%  Similarity=0.251  Sum_probs=58.0

Q ss_pred             cCCCCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHH
Q 046527           93 FRPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREF  156 (380)
Q Consensus        93 i~~g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~  156 (380)
                      ..++.+|||+|||+|.++..++..+.+|+|+|+++.+++.|++++..++..+++.+.++|+.+.
T Consensus        53 ~~~~~~vLDiGcG~G~~~~~la~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~  116 (219)
T TIGR02021        53 PLKGKRVLDAGCGTGLLSIELAKRGAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSL  116 (219)
T ss_pred             CCCCCEEEEEeCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhC
Confidence            4568999999999999999999988899999999999999999999888766699999998764

This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.

>PLN02781 Probable caffeoyl-CoA O-methyltransferase

Probab=98.56  E-value=5.1e-07  Score=85.84  Aligned_cols=83  Identities=16%  Similarity=0.056  Sum_probs=69.6

Q ss_pred             cChHHHHHHHHHhccCCCCeEEEecCCcchhHHHHhhc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHH
Q 046527           79 NSRLEHEHLRIISQFRPGETICDMFAGIGPFAIPAAQK---GCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDARE  155 (380)
Q Consensus        79 n~rl~tE~~r~i~~i~~g~~VLDlfcGvG~fsl~aA~~---g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e  155 (380)
                      .+......+..+....+.++|||+|||+|.-++.++..   +.+|+++|+++++++.|++|++.+++.++++++.+|+.+
T Consensus        52 v~~~~g~~L~~l~~~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~  131 (234)
T PLN02781         52 VPVDEGLFLSMLVKIMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALS  131 (234)
T ss_pred             cCHHHHHHHHHHHHHhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHH
Confidence            34434445566667778899999999999977777653   349999999999999999999999999999999999999


Q ss_pred             HHHHHh
Q 046527          156 FIRQLM  161 (380)
Q Consensus       156 ~l~~l~  161 (380)
                      .+..+.
T Consensus       132 ~L~~l~  137 (234)
T PLN02781        132 ALDQLL  137 (234)
T ss_pred             HHHHHH
Confidence            998875

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=98.55  E-value=4e-07  Score=84.51  Aligned_cols=64  Identities=22%  Similarity=0.225  Sum_probs=57.3

Q ss_pred             ccCCCCeEEEecCCcchhHHHHhhc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHH
Q 046527           92 QFRPGETICDMFAGIGPFAIPAAQK---GCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDARE  155 (380)
Q Consensus        92 ~i~~g~~VLDlfcGvG~fsl~aA~~---g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e  155 (380)
                      .+.++++|||+|||+|.++..+++.   +.+|+++|+++.+++.+++|+..+++.++++++++|+.+
T Consensus        69 ~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~  135 (205)
T PRK13944         69 EPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKR  135 (205)
T ss_pred             CCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCccc
Confidence            4578899999999999999988875   359999999999999999999999988779999999865

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=98.54  E-value=2.2e-07  Score=85.68  Aligned_cols=62  Identities=24%  Similarity=0.202  Sum_probs=56.1

Q ss_pred             cCCCCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHH
Q 046527           93 FRPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDARE  155 (380)
Q Consensus        93 i~~g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e  155 (380)
                      ..++.+|||+|||+|.+++.+|++|.+|+|+|+|+.+++.++++++.+++.+ +++..+|+.+
T Consensus        28 ~~~~~~vLDiGcG~G~~a~~La~~g~~V~gvD~S~~~i~~a~~~~~~~~~~~-v~~~~~d~~~   89 (197)
T PRK11207         28 VVKPGKTLDLGCGNGRNSLYLAANGFDVTAWDKNPMSIANLERIKAAENLDN-LHTAVVDLNN   89 (197)
T ss_pred             cCCCCcEEEECCCCCHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHcCCCc-ceEEecChhh
Confidence            3456899999999999999999999999999999999999999999999875 8888888754

>PHA03411 putative methyltransferase; Provisional

Probab=98.54  E-value=1.5e-06  Score=84.80  Aligned_cols=75  Identities=17%  Similarity=0.131  Sum_probs=56.9

Q ss_pred             CceeecChHHHHHHHHHhccCCCCeEEEecCCcchhHHHHhhc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEec
Q 046527           74 SLVYWNSRLEHEHLRIISQFRPGETICDMFAGIGPFAIPAAQK--GCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNM  151 (380)
Q Consensus        74 ~~ff~n~rl~tE~~r~i~~i~~g~~VLDlfcGvG~fsl~aA~~--g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~  151 (380)
                      ...|+.++......  +.....+.+|||+|||+|.+++.++.+  +.+|+++|+|+.+++.+++|.     . +++++++
T Consensus        45 ~G~FfTP~~i~~~f--~~~~~~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~-----~-~v~~v~~  116 (279)
T PHA03411         45 SGAFFTPEGLAWDF--TIDAHCTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLL-----P-EAEWITS  116 (279)
T ss_pred             ceeEcCCHHHHHHH--HhccccCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC-----c-CCEEEEC
Confidence            45677776444332  223344569999999999999988875  459999999999999999874     2 3788999


Q ss_pred             cHHHH
Q 046527          152 DAREF  156 (380)
Q Consensus       152 Da~e~  156 (380)
                      |++++
T Consensus       117 D~~e~  121 (279)
T PHA03411        117 DVFEF  121 (279)
T ss_pred             chhhh
Confidence            98765

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=98.52  E-value=3.3e-07  Score=89.48  Aligned_cols=69  Identities=26%  Similarity=0.392  Sum_probs=63.6

Q ss_pred             hccCCCCeEEEecCCcchhHHHHhhc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHHHHH
Q 046527           91 SQFRPGETICDMFAGIGPFAIPAAQK-GCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFIRQ  159 (380)
Q Consensus        91 ~~i~~g~~VLDlfcGvG~fsl~aA~~-g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~l~~  159 (380)
                      ..+.+|++|||+|||.|.+++.+|+. +++|+|+++|+...+.+++-++.-|++++++++..|.+++-..
T Consensus        68 l~L~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~e~  137 (283)
T COG2230          68 LGLKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFEEP  137 (283)
T ss_pred             cCCCCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccccccc
Confidence            46789999999999999999999987 7899999999999999999999999998899999999887443

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=98.50  E-value=2.8e-07  Score=100.42  Aligned_cols=66  Identities=21%  Similarity=0.363  Sum_probs=57.4

Q ss_pred             hcc-CCCCeEEEecCCcchhHHHHhhcC--------------------------------------------CEEEEEeC
Q 046527           91 SQF-RPGETICDMFAGIGPFAIPAAQKG--------------------------------------------CIVFANDL  125 (380)
Q Consensus        91 ~~i-~~g~~VLDlfcGvG~fsl~aA~~g--------------------------------------------~~V~avDl  125 (380)
                      ..+ .++..++|.|||+|+|.+.+|..+                                            .+++|+|+
T Consensus       185 a~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Di  264 (702)
T PRK11783        185 SGWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDI  264 (702)
T ss_pred             cCCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEEC
Confidence            344 568899999999999999987531                                            26999999


Q ss_pred             CHHHHHHHHHHHHHcCCCCcEEEEeccHHHH
Q 046527          126 NPDSVHYLKINAKVNKVDNYVRAYNMDAREF  156 (380)
Q Consensus       126 np~Aie~a~~Na~lN~l~~ri~~~~~Da~e~  156 (380)
                      ++.+++.|++|+..+|+.+.+++.++|+.++
T Consensus       265 d~~av~~A~~N~~~~g~~~~i~~~~~D~~~~  295 (702)
T PRK11783        265 DPRVIQAARKNARRAGVAELITFEVKDVADL  295 (702)
T ss_pred             CHHHHHHHHHHHHHcCCCcceEEEeCChhhc
Confidence            9999999999999999998899999998764

>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []

Probab=98.47  E-value=7.1e-07  Score=85.82  Aligned_cols=64  Identities=20%  Similarity=0.318  Sum_probs=53.7

Q ss_pred             hccCCCCeEEEecCCcchhHHHHhhc-C--CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHH
Q 046527           91 SQFRPGETICDMFAGIGPFAIPAAQK-G--CIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAR  154 (380)
Q Consensus        91 ~~i~~g~~VLDlfcGvG~fsl~aA~~-g--~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~  154 (380)
                      ..+.+|++||+.|.|+|.+++.+++. +  .+|+.+|.+++.++.|++|++.+++.+.+++.+.|+.
T Consensus        36 l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~  102 (247)
T PF08704_consen   36 LDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVC  102 (247)
T ss_dssp             TT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GG
T ss_pred             cCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEeccee
Confidence            56899999999999999999999975 2  4999999999999999999999999988999999985

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.

>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed

Probab=98.47  E-value=3.4e-07  Score=88.73  Aligned_cols=61  Identities=18%  Similarity=0.281  Sum_probs=54.2

Q ss_pred             ccCCCCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHH
Q 046527           92 QFRPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREF  156 (380)
Q Consensus        92 ~i~~g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~  156 (380)
                      .+.++++|||+|||+|.++..+++.+.+|+|+|+++.+++.+++++..    ++++++++|+.++
T Consensus        39 ~~~~~~~VLEiG~G~G~lt~~L~~~~~~v~avE~d~~~~~~~~~~~~~----~~v~~i~~D~~~~   99 (272)
T PRK00274         39 GPQPGDNVLEIGPGLGALTEPLLERAAKVTAVEIDRDLAPILAETFAE----DNLTIIEGDALKV   99 (272)
T ss_pred             CCCCcCeEEEeCCCccHHHHHHHHhCCcEEEEECCHHHHHHHHHhhcc----CceEEEEChhhcC
Confidence            467889999999999999999999988999999999999999988742    3599999998864

>TIGR00477 tehB tellurite resistance protein TehB

Probab=98.46  E-value=6.2e-07  Score=82.63  Aligned_cols=59  Identities=20%  Similarity=0.115  Sum_probs=52.1

Q ss_pred             CCCCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHH
Q 046527           94 RPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAR  154 (380)
Q Consensus        94 ~~g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~  154 (380)
                      .++.+|||+|||+|.+++.++++|.+|+|+|+++.+++.++++++.+++.  +.+..+|+.
T Consensus        29 ~~~~~vLDiGcG~G~~a~~la~~g~~V~~iD~s~~~l~~a~~~~~~~~~~--v~~~~~d~~   87 (195)
T TIGR00477        29 VAPCKTLDLGCGQGRNSLYLSLAGYDVRAWDHNPASIASVLDMKARENLP--LRTDAYDIN   87 (195)
T ss_pred             CCCCcEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHhCCC--ceeEeccch
Confidence            34579999999999999999999999999999999999999999988874  667777764

Part of a tellurite-reducing operon tehA and tehB

>PLN02396 hexaprenyldihydroxybenzoate methyltransferase

Probab=98.45  E-value=6.4e-07  Score=89.24  Aligned_cols=63  Identities=21%  Similarity=0.258  Sum_probs=56.8

Q ss_pred             CCCCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHH
Q 046527           94 RPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREF  156 (380)
Q Consensus        94 ~~g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~  156 (380)
                      .+|.+|||+|||.|.++..+++.|++|+|+|.++++++.|++++..+++..+++++++|+.++
T Consensus       130 ~~g~~ILDIGCG~G~~s~~La~~g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l  192 (322)
T PLN02396        130 FEGLKFIDIGCGGGLLSEPLARMGATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKL  192 (322)
T ss_pred             CCCCEEEEeeCCCCHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHh
Confidence            356799999999999999999999999999999999999999988877665699999998765

>PRK04266 fibrillarin; Provisional

Probab=98.44  E-value=1.1e-05  Score=76.52  Aligned_cols=61  Identities=20%  Similarity=0.199  Sum_probs=51.4

Q ss_pred             hccCCCCeEEEecCCcchhHHHHhhcC--CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHH
Q 046527           91 SQFRPGETICDMFAGIGPFAIPAAQKG--CIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAR  154 (380)
Q Consensus        91 ~~i~~g~~VLDlfcGvG~fsl~aA~~g--~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~  154 (380)
                      ..+.+|.+|||+|||+|.+++.++...  .+|+|+|+++.+++.+.++++..  .+ +.++.+|+.
T Consensus        68 l~i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~--~n-v~~i~~D~~  130 (226)
T PRK04266         68 FPIKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEER--KN-IIPILADAR  130 (226)
T ss_pred             CCCCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhc--CC-cEEEECCCC
Confidence            456789999999999999999999874  48999999999999988887643  33 788888875

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=98.43  E-value=1.3e-06  Score=81.69  Aligned_cols=64  Identities=20%  Similarity=0.116  Sum_probs=57.0

Q ss_pred             hccCCCCeEEEecCCcchhHHHHhhcC---CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHH
Q 046527           91 SQFRPGETICDMFAGIGPFAIPAAQKG---CIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDARE  155 (380)
Q Consensus        91 ~~i~~g~~VLDlfcGvG~fsl~aA~~g---~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e  155 (380)
                      ..+.++++|||+|||+|.++..+++..   .+|+++|+++++++.+++|++.+++.+ ++++++|+.+
T Consensus        72 l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~-v~~~~gd~~~  138 (212)
T PRK13942         72 LDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDN-VEVIVGDGTL  138 (212)
T ss_pred             cCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCC-eEEEECCccc
Confidence            457889999999999999999888763   599999999999999999999999875 9999999753

>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional

Probab=98.42  E-value=8.5e-07  Score=84.54  Aligned_cols=63  Identities=19%  Similarity=0.360  Sum_probs=56.2

Q ss_pred             cCCCCeEEEecCCcchhHHHHhhc----CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHH
Q 046527           93 FRPGETICDMFAGIGPFAIPAAQK----GCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDARE  155 (380)
Q Consensus        93 i~~g~~VLDlfcGvG~fsl~aA~~----g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e  155 (380)
                      +.++.+|||+|||+|..++.+++.    +++|+|+|+++.+++.|++++..+++.++++++++|+.+
T Consensus        54 ~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~  120 (247)
T PRK15451         54 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRD  120 (247)
T ss_pred             CCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhh
Confidence            467889999999999999988762    469999999999999999999998888779999999865

>PLN02476 O-methyltransferase

Probab=98.42  E-value=2.1e-06  Score=83.95  Aligned_cols=82  Identities=16%  Similarity=0.100  Sum_probs=70.7

Q ss_pred             ChHHHHHHHHHhccCCCCeEEEecCCcchhHHHHhhc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHH
Q 046527           80 SRLEHEHLRIISQFRPGETICDMFAGIGPFAIPAAQK---GCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREF  156 (380)
Q Consensus        80 ~rl~tE~~r~i~~i~~g~~VLDlfcGvG~fsl~aA~~---g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~  156 (380)
                      .+.+...+..+....+.++|||+|+|+|..++.+|..   +.+|+++|.+++.++.|++|++.+|+.++|+++.+|+.+.
T Consensus       103 ~~~~g~lL~~L~~~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~  182 (278)
T PLN02476        103 SPDQAQLLAMLVQILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAES  182 (278)
T ss_pred             CHHHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHH
Confidence            4444444556666777899999999999999999974   3489999999999999999999999998999999999999


Q ss_pred             HHHHh
Q 046527          157 IRQLM  161 (380)
Q Consensus       157 l~~l~  161 (380)
                      ++.+.
T Consensus       183 L~~l~  187 (278)
T PLN02476        183 LKSMI  187 (278)
T ss_pred             HHHHH
Confidence            98874

>PLN02244 tocopherol O-methyltransferase

Probab=98.40  E-value=1e-06  Score=88.12  Aligned_cols=62  Identities=24%  Similarity=0.177  Sum_probs=57.2

Q ss_pred             CCCCeEEEecCCcchhHHHHhhc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHH
Q 046527           94 RPGETICDMFAGIGPFAIPAAQK-GCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDARE  155 (380)
Q Consensus        94 ~~g~~VLDlfcGvG~fsl~aA~~-g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e  155 (380)
                      .++++|||+|||+|.++..+++. +++|+|+|+++.+++.++++++.+++.++++++.+|+.+
T Consensus       117 ~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~  179 (340)
T PLN02244        117 KRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALN  179 (340)
T ss_pred             CCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCccc
Confidence            56889999999999999999986 789999999999999999999999998779999999865

>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]

Probab=98.38  E-value=1.7e-06  Score=83.71  Aligned_cols=77  Identities=17%  Similarity=0.270  Sum_probs=60.9

Q ss_pred             eecChHHHHHHHHHhccCCCCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHH
Q 046527           77 YWNSRLEHEHLRIISQFRPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREF  156 (380)
Q Consensus        77 f~n~rl~tE~~r~i~~i~~g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~  156 (380)
                      |..+....+..-....+.+++.||++|+|.|.++..+++++++|+|+|+++..++.+++...   ..++++++++|+.++
T Consensus        12 FL~d~~v~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~~~~v~aiEiD~~l~~~L~~~~~---~~~n~~vi~~DaLk~   88 (259)
T COG0030          12 FLIDKNVIDKIVEAANISPGDNVLEIGPGLGALTEPLLERAARVTAIEIDRRLAEVLKERFA---PYDNLTVINGDALKF   88 (259)
T ss_pred             cccCHHHHHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhhcCeEEEEEeCHHHHHHHHHhcc---cccceEEEeCchhcC
Confidence            34333333333334567779999999999999999999999999999999999999998865   234599999999754

>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed

Probab=98.38  E-value=1.8e-06  Score=80.01  Aligned_cols=65  Identities=20%  Similarity=0.153  Sum_probs=57.9

Q ss_pred             HhccCCCCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHH
Q 046527           90 ISQFRPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDARE  155 (380)
Q Consensus        90 i~~i~~g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e  155 (380)
                      ...+.++.+|||+|||+|.++..++..+.+|+++|.++.+++.+++|++.+++.+ +++..+|+.+
T Consensus        73 ~l~~~~~~~VLeiG~GsG~~t~~la~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~-v~~~~~d~~~  137 (212)
T PRK00312         73 LLELKPGDRVLEIGTGSGYQAAVLAHLVRRVFSVERIKTLQWEAKRRLKQLGLHN-VSVRHGDGWK  137 (212)
T ss_pred             hcCCCCCCEEEEECCCccHHHHHHHHHhCEEEEEeCCHHHHHHHHHHHHHCCCCc-eEEEECCccc
Confidence            3456788999999999999999888877799999999999999999999999887 9999998743

>COG4076 Predicted RNA methylase [General function prediction only]

Probab=98.38  E-value=4.1e-07  Score=83.89  Aligned_cols=59  Identities=27%  Similarity=0.291  Sum_probs=55.6

Q ss_pred             CeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHH
Q 046527           97 ETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREF  156 (380)
Q Consensus        97 ~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~  156 (380)
                      +++.|||+|+|.+++.+|.+..+|+|+|.+|.-+.+|.+|+..+|+.+ ++++.+|++.+
T Consensus        34 d~~~DLGaGsGiLs~~Aa~~A~rViAiE~dPk~a~~a~eN~~v~g~~n-~evv~gDA~~y   92 (252)
T COG4076          34 DTFADLGAGSGILSVVAAHAAERVIAIEKDPKRARLAEENLHVPGDVN-WEVVVGDARDY   92 (252)
T ss_pred             hceeeccCCcchHHHHHHhhhceEEEEecCcHHHHHhhhcCCCCCCcc-eEEEecccccc
Confidence            799999999999999999997899999999999999999999999887 99999999754

>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase

Probab=98.37  E-value=2e-06  Score=80.31  Aligned_cols=63  Identities=17%  Similarity=0.211  Sum_probs=55.6

Q ss_pred             ccCCCCeEEEecCCcchhHHHHhhc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHH
Q 046527           92 QFRPGETICDMFAGIGPFAIPAAQK---GCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDARE  155 (380)
Q Consensus        92 ~i~~g~~VLDlfcGvG~fsl~aA~~---g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e  155 (380)
                      .+.++.+|||+|||+|.++..++..   +.+|+++|+++.+++.++++++.+++. +++++++|+.+
T Consensus        42 ~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~  107 (231)
T TIGR02752        42 NVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLH-NVELVHGNAME  107 (231)
T ss_pred             CCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCC-ceEEEEechhc
Confidence            4567899999999999999999875   359999999999999999999888886 49999999865

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.

>PRK04457 spermidine synthase; Provisional

Probab=98.37  E-value=3.7e-06  Score=81.32  Aligned_cols=68  Identities=15%  Similarity=0.100  Sum_probs=58.8

Q ss_pred             cCCCCeEEEecCCcchhHHHHhhc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHHHHHH
Q 046527           93 FRPGETICDMFAGIGPFAIPAAQK--GCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFIRQL  160 (380)
Q Consensus        93 i~~g~~VLDlfcGvG~fsl~aA~~--g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~l~~l  160 (380)
                      ..+..+|||+|||.|.++..+++.  +.+|+++|++|.+++.|+++...++..++++++.+|+.+++...
T Consensus        64 ~~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~  133 (262)
T PRK04457         64 NPRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVH  133 (262)
T ss_pred             CCCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhC
Confidence            345679999999999999988876  35999999999999999999877766667999999999998643

>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases

Probab=98.36  E-value=1.2e-05  Score=75.38  Aligned_cols=75  Identities=15%  Similarity=0.208  Sum_probs=65.2

Q ss_pred             HHHHhccCCCCeEEEecCCcchhHHHHhhc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHHHHHHh
Q 046527           87 LRIISQFRPGETICDMFAGIGPFAIPAAQK---GCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFIRQLM  161 (380)
Q Consensus        87 ~r~i~~i~~g~~VLDlfcGvG~fsl~aA~~---g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~l~~l~  161 (380)
                      +..+....+..+||++|+|+|.-++.+|..   +++|+++|.+|+.++.|++|++..|+.++|+++.+|+.++++.+.
T Consensus        37 L~~l~~~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~  114 (205)
T PF01596_consen   37 LQMLVRLTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELA  114 (205)
T ss_dssp             HHHHHHHHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHH
T ss_pred             HHHHHHhcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHH
Confidence            444445556789999999999999999975   569999999999999999999999999999999999999999886

The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....

>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=98.36  E-value=4.9e-06  Score=83.53  Aligned_cols=99  Identities=25%  Similarity=0.399  Sum_probs=73.9

Q ss_pred             EEEeCCeEEEEcc--------CceeecChHHHHHHH---HHhccCC--CCeEEEecCCcchhHHHHhhc-CC-EEEEEeC
Q 046527           61 EVKQYGATFKLDY--------SLVYWNSRLEHEHLR---IISQFRP--GETICDMFAGIGPFAIPAAQK-GC-IVFANDL  125 (380)
Q Consensus        61 ~v~E~G~~F~id~--------~~ff~n~rl~tE~~r---~i~~i~~--g~~VLDlfcGvG~fsl~aA~~-g~-~V~avDl  125 (380)
                      .++|++.++.+.-        ..+|+|+++...+..   .+..+.+  ..+|+|.+||+|.=||.+|.- +. +|+.+|+
T Consensus         5 ~v~EG~~~i~vP~~~~~~~~~~pVFYNP~m~~NRDlsV~~l~~~~~~~~~~v~DalsatGiRgIRya~E~~~~~v~lNDi   84 (380)
T COG1867           5 EVKEGSAKIYVPDPYKGGSKRAPVFYNPAMEFNRDLSVLVLKAFGKLLPKRVLDALSATGIRGIRYAVETGVVKVVLNDI   84 (380)
T ss_pred             EeecCceEEEcCCCCCCCCCCCcceeCchhhhccchhHHHHHHhhccCCeEEeecccccchhHhhhhhhcCccEEEEccC
Confidence            3445555555532        238999987766532   1222221  679999999999999999976 44 8999999


Q ss_pred             CHHHHHHHHHHHHHcCCCCcEEEEeccHHHHHHHH
Q 046527          126 NPDSVHYLKINAKVNKVDNYVRAYNMDAREFIRQL  160 (380)
Q Consensus       126 np~Aie~a~~Na~lN~l~~ri~~~~~Da~e~l~~l  160 (380)
                      ||.|++.+++|+++|...+ ..+++.|+-.++.+.
T Consensus        85 sp~Avelik~Nv~~N~~~~-~~v~n~DAN~lm~~~  118 (380)
T COG1867          85 SPKAVELIKENVRLNSGED-AEVINKDANALLHEL  118 (380)
T ss_pred             CHHHHHHHHHHHHhcCccc-ceeecchHHHHHHhc
Confidence            9999999999999996666 677779998887653

>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family

Probab=98.35  E-value=3.9e-06  Score=78.84  Aligned_cols=41  Identities=17%  Similarity=0.105  Sum_probs=38.5

Q ss_pred             CCCCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHH
Q 046527           94 RPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLK  134 (380)
Q Consensus        94 ~~g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~  134 (380)
                      .++.+|||+|||.|.-++.+|.+|..|+|+|+|+.|++.+.
T Consensus        33 ~~~~rvLd~GCG~G~da~~LA~~G~~V~gvD~S~~Ai~~~~   73 (213)
T TIGR03840        33 PAGARVFVPLCGKSLDLAWLAEQGHRVLGVELSEIAVEQFF   73 (213)
T ss_pred             CCCCeEEEeCCCchhHHHHHHhCCCeEEEEeCCHHHHHHHH
Confidence            57789999999999999999999999999999999999864

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=98.34  E-value=2.3e-06  Score=85.23  Aligned_cols=64  Identities=16%  Similarity=0.062  Sum_probs=56.4

Q ss_pred             ccCCCCeEEEecCCcchhHHHHhhcC---CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHH
Q 046527           92 QFRPGETICDMFAGIGPFAIPAAQKG---CIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREF  156 (380)
Q Consensus        92 ~i~~g~~VLDlfcGvG~fsl~aA~~g---~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~  156 (380)
                      .+.++++|||+|||+|.+++.+++..   ..|+++|.++++++.|++|++.+++++ +.++++|+.+.
T Consensus        77 ~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~n-V~~i~gD~~~~  143 (322)
T PRK13943         77 GLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIEN-VIFVCGDGYYG  143 (322)
T ss_pred             CCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCc-EEEEeCChhhc
Confidence            46788999999999999999999763   369999999999999999999999875 89999987643

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=98.34  E-value=7.9e-07  Score=84.70  Aligned_cols=63  Identities=21%  Similarity=0.272  Sum_probs=55.9

Q ss_pred             CCCCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHHHH
Q 046527           94 RPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFIR  158 (380)
Q Consensus        94 ~~g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~l~  158 (380)
                      -+|.+|||+|||.|.++.++|+.|+.|+|+|+++.+++.|+..+..+++.  +.+.+..+++...
T Consensus        58 l~g~~vLDvGCGgG~Lse~mAr~Ga~VtgiD~se~~I~~Ak~ha~e~gv~--i~y~~~~~edl~~  120 (243)
T COG2227          58 LPGLRVLDVGCGGGILSEPLARLGASVTGIDASEKPIEVAKLHALESGVN--IDYRQATVEDLAS  120 (243)
T ss_pred             CCCCeEEEecCCccHhhHHHHHCCCeeEEecCChHHHHHHHHhhhhcccc--ccchhhhHHHHHh
Confidence            37899999999999999999999999999999999999999999999886  5667777766543

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

Probab=98.34  E-value=2.4e-06  Score=81.74  Aligned_cols=63  Identities=24%  Similarity=0.318  Sum_probs=57.8

Q ss_pred             cCCCCeEEEecCCcchhHHHHhhcC--CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHH
Q 046527           93 FRPGETICDMFAGIGPFAIPAAQKG--CIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREF  156 (380)
Q Consensus        93 i~~g~~VLDlfcGvG~fsl~aA~~g--~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~  156 (380)
                      ..+|.+|||++||+|-+++.+++..  ++|+++|+|+.+++.+++-+..-++.+ ++++.+||.+.
T Consensus        49 ~~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~-i~fv~~dAe~L  113 (238)
T COG2226          49 IKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQN-VEFVVGDAENL  113 (238)
T ss_pred             CCCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccc-eEEEEechhhC
Confidence            3489999999999999999999886  599999999999999999999888888 99999999865

>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated

Probab=98.32  E-value=3.6e-06  Score=78.14  Aligned_cols=61  Identities=26%  Similarity=0.317  Sum_probs=55.4

Q ss_pred             cCCCCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccH
Q 046527           93 FRPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDA  153 (380)
Q Consensus        93 i~~g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da  153 (380)
                      ..++.+|||+|||+|.++..+++.+..|+++|+++.+++.|+++....++.+++.+..+|.
T Consensus        61 ~~~~~~vLDvGcG~G~~~~~l~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~  121 (230)
T PRK07580         61 DLTGLRILDAGCGVGSLSIPLARRGAKVVASDISPQMVEEARERAPEAGLAGNITFEVGDL  121 (230)
T ss_pred             CCCCCEEEEEeCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCc
Confidence            3567899999999999999999998899999999999999999998888866799999983

>KOG2904 consensus Predicted methyltransferase [General function prediction only]

Probab=98.30  E-value=3.8e-06  Score=81.44  Aligned_cols=98  Identities=17%  Similarity=0.217  Sum_probs=72.7

Q ss_pred             ceEEEecCCccEEEEEeCCeEEEEccCceeecChHHHHHH--HHHh-----ccCCCCeEEEecCCcchhHHHHhhc--CC
Q 046527           48 EFEILAGEDNMVTEVKQYGATFKLDYSLVYWNSRLEHEHL--RIIS-----QFRPGETICDMFAGIGPFAIPAAQK--GC  118 (380)
Q Consensus        48 ~~elLaG~~~~~~~v~E~G~~F~id~~~ff~n~rl~tE~~--r~i~-----~i~~g~~VLDlfcGvG~fsl~aA~~--g~  118 (380)
                      .++.+-|+-++      +++.....++-  +.+|..||-.  .++.     ...++..+||+|||+|++++.++..  -+
T Consensus       102 PlQYIlg~~~F------~~l~l~~~pgV--lIPRpETEE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~~~  173 (328)
T KOG2904|consen  102 PLQYILGSQPF------GDLDLVCKPGV--LIPRPETEEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLPQC  173 (328)
T ss_pred             ChhheeccCcc------CCceEEecCCe--eecCccHHHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCCCc
Confidence            55666665543      44555555553  4566666632  2222     2345668999999999999999875  35


Q ss_pred             EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccH
Q 046527          119 IVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDA  153 (380)
Q Consensus       119 ~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da  153 (380)
                      +|+|+|.++.|+..|.+|+..+++.+++.+++-+.
T Consensus       174 ~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~m  208 (328)
T KOG2904|consen  174 TVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIM  208 (328)
T ss_pred             eEEEEeccHHHHHHHHHHHHHHhhcCceEEEeccc
Confidence            99999999999999999999999999999987654

>TIGR00740 methyltransferase, putative

Probab=98.30  E-value=2.3e-06  Score=80.83  Aligned_cols=64  Identities=14%  Similarity=0.154  Sum_probs=55.8

Q ss_pred             cCCCCeEEEecCCcchhHHHHhhc----CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHH
Q 046527           93 FRPGETICDMFAGIGPFAIPAAQK----GCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREF  156 (380)
Q Consensus        93 i~~g~~VLDlfcGvG~fsl~aA~~----g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~  156 (380)
                      +.++.+|||+|||+|.++..+++.    +++|+++|+++.+++.|++++...+...+++++++|+.++
T Consensus        51 ~~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~  118 (239)
T TIGR00740        51 VTPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHV  118 (239)
T ss_pred             CCCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhC
Confidence            357889999999999999999874    4699999999999999999998776666699999999754

A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.

>PRK13255 thiopurine S-methyltransferase; Reviewed

Probab=98.29  E-value=4.9e-06  Score=78.45  Aligned_cols=42  Identities=17%  Similarity=0.142  Sum_probs=38.9

Q ss_pred             cCCCCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHH
Q 046527           93 FRPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLK  134 (380)
Q Consensus        93 i~~g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~  134 (380)
                      +.++.+|||+|||.|.-++.+|.+|..|+|+|+++.|++.+.
T Consensus        35 ~~~~~rvL~~gCG~G~da~~LA~~G~~V~avD~s~~Ai~~~~   76 (218)
T PRK13255         35 LPAGSRVLVPLCGKSLDMLWLAEQGHEVLGVELSELAVEQFF   76 (218)
T ss_pred             CCCCCeEEEeCCCChHhHHHHHhCCCeEEEEccCHHHHHHHH
Confidence            356789999999999999999999999999999999999874

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=98.28  E-value=1.1e-05  Score=77.43  Aligned_cols=64  Identities=27%  Similarity=0.351  Sum_probs=54.5

Q ss_pred             hccCCCCeEEEecCCcchhHHHHhhc-C--CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHH
Q 046527           91 SQFRPGETICDMFAGIGPFAIPAAQK-G--CIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDARE  155 (380)
Q Consensus        91 ~~i~~g~~VLDlfcGvG~fsl~aA~~-g--~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e  155 (380)
                      ..+.+|++|||+|||+|..++.+++. +  .+|+++|+++.+++.|++|+..+++.+ ++++.+|+.+
T Consensus        73 ~~~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~-v~~~~~d~~~  139 (272)
T PRK11873         73 AELKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTN-VEFRLGEIEA  139 (272)
T ss_pred             ccCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCC-EEEEEcchhh
Confidence            35678999999999999988877764 3  379999999999999999999888864 8888888743

>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]

Probab=98.27  E-value=1.1e-06  Score=87.59  Aligned_cols=63  Identities=17%  Similarity=0.276  Sum_probs=58.7

Q ss_pred             cCCCCeEEEecCCcchhHHHHhhcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHH
Q 046527           93 FRPGETICDMFAGIGPFAIPAAQKGC-IVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREF  156 (380)
Q Consensus        93 i~~g~~VLDlfcGvG~fsl~aA~~g~-~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~  156 (380)
                      +.++++|||+|||+|.+++.+|+.|+ +|+|||-+.-+ +.|++.+..|++++.|+++.+.+++.
T Consensus        58 lf~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia-~~a~~iv~~N~~~~ii~vi~gkvEdi  121 (346)
T KOG1499|consen   58 LFKDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIA-DFARKIVKDNGLEDVITVIKGKVEDI  121 (346)
T ss_pred             hcCCCEEEEcCCCccHHHHHHHHhCcceEEEEechHHH-HHHHHHHHhcCccceEEEeecceEEE
Confidence            56799999999999999999999998 99999988877 99999999999999999999998776

>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins

Probab=98.27  E-value=3.2e-06  Score=78.28  Aligned_cols=67  Identities=19%  Similarity=0.205  Sum_probs=55.4

Q ss_pred             HHHHhccCCCCeEEEecCCcchhHHHHhh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHHHHHHh
Q 046527           87 LRIISQFRPGETICDMFAGIGPFAIPAAQ-KGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFIRQLM  161 (380)
Q Consensus        87 ~r~i~~i~~g~~VLDlfcGvG~fsl~aA~-~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~l~~l~  161 (380)
                      ..++..+.+|.+|||+|||-|.+-..+.. +++.++|+|++++.+..+..+    |    +.++++|+.+.+..+.
T Consensus         5 ~~I~~~I~pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~r----G----v~Viq~Dld~gL~~f~   72 (193)
T PF07021_consen    5 QIIAEWIEPGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVAR----G----VSVIQGDLDEGLADFP   72 (193)
T ss_pred             HHHHHHcCCCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHHc----C----CCEEECCHHHhHhhCC
Confidence            34556789999999999999999988876 577999999999988776644    3    5689999999876553

Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].

>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []

Probab=98.25  E-value=2.6e-06  Score=81.16  Aligned_cols=64  Identities=23%  Similarity=0.416  Sum_probs=48.6

Q ss_pred             ccCCCCeEEEecCCcchhHHHHhhc-C--CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHH
Q 046527           92 QFRPGETICDMFAGIGPFAIPAAQK-G--CIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREF  156 (380)
Q Consensus        92 ~i~~g~~VLDlfcGvG~fsl~aA~~-g--~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~  156 (380)
                      ...+|.+|||++||+|-++..+++. +  .+|+++|+++.+++.|++.++..+..+ |+++++|+.+.
T Consensus        44 ~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~-i~~v~~da~~l  110 (233)
T PF01209_consen   44 GLRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQN-IEFVQGDAEDL  110 (233)
T ss_dssp             T--S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--S-EEEEE-BTTB-
T ss_pred             CCCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCC-eeEEEcCHHHh
Confidence            4678899999999999999999876 2  499999999999999999999888874 99999999764

Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.

>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=98.23  E-value=9.3e-07  Score=78.52  Aligned_cols=59  Identities=20%  Similarity=0.332  Sum_probs=50.1

Q ss_pred             CCCeEEEecCCcchhHHHHhhcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHH
Q 046527           95 PGETICDMFAGIGPFAIPAAQKGC-IVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDARE  155 (380)
Q Consensus        95 ~g~~VLDlfcGvG~fsl~aA~~g~-~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e  155 (380)
                      .|+.++|+|||.|.+++.++..+. .|+|+|++|+|++.+.+|+....+.  +.+.++|+.+
T Consensus        48 Egkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEvq--idlLqcdild  107 (185)
T KOG3420|consen   48 EGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEVQ--IDLLQCDILD  107 (185)
T ss_pred             cCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhhhh--hheeeeeccc
Confidence            689999999999999988877665 8999999999999999999887765  4667666543

>TIGR00755 ksgA dimethyladenosine transferase

Probab=98.23  E-value=4.1e-06  Score=80.16  Aligned_cols=62  Identities=16%  Similarity=0.259  Sum_probs=54.1

Q ss_pred             ccCCCCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHH
Q 046527           92 QFRPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREF  156 (380)
Q Consensus        92 ~i~~g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~  156 (380)
                      ...++++|||+|||+|.++..+++.+..|+++|+++.+++.++.+...   ..+++++++|+.++
T Consensus        26 ~~~~~~~VLEiG~G~G~lt~~L~~~~~~v~~iE~d~~~~~~l~~~~~~---~~~v~v~~~D~~~~   87 (253)
T TIGR00755        26 NVLEGDVVLEIGPGLGALTEPLLKRAKKVTAIEIDPRLAEILRKLLSL---YERLEVIEGDALKV   87 (253)
T ss_pred             CCCCcCEEEEeCCCCCHHHHHHHHhCCcEEEEECCHHHHHHHHHHhCc---CCcEEEEECchhcC
Confidence            456789999999999999999999988999999999999999988743   33589999998653

Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase

>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2

Probab=98.22  E-value=2.1e-06  Score=84.07  Aligned_cols=78  Identities=18%  Similarity=0.356  Sum_probs=54.8

Q ss_pred             eeecChHHHHHHHHHhccCCCCeEEEecCCcchhHHHHhhc---------CCEEEEEeCCHHHHHHHHHHHHHcCCCCc-
Q 046527           76 VYWNSRLEHEHLRIISQFRPGETICDMFAGIGPFAIPAAQK---------GCIVFANDLNPDSVHYLKINAKVNKVDNY-  145 (380)
Q Consensus        76 ff~n~rl~tE~~r~i~~i~~g~~VLDlfcGvG~fsl~aA~~---------g~~V~avDlnp~Aie~a~~Na~lN~l~~r-  145 (380)
                      .|+.|+...+.+..+....++++|+|.+||+|.|.+.+...         ...++|+|+++.++..++.|+.++++... 
T Consensus        27 ~~~TP~~i~~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~  106 (311)
T PF02384_consen   27 QFYTPREIVDLMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSN  106 (311)
T ss_dssp             GC---HHHHHHHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBG
T ss_pred             eeehHHHHHHHHHhhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhcccccc
Confidence            46677765555544446677889999999999999988862         34899999999999999999998876642 


Q ss_pred             EEEEeccH
Q 046527          146 VRAYNMDA  153 (380)
Q Consensus       146 i~~~~~Da  153 (380)
                      ..+..+|.
T Consensus       107 ~~i~~~d~  114 (311)
T PF02384_consen  107 INIIQGDS  114 (311)
T ss_dssp             CEEEES-T
T ss_pred             cccccccc
Confidence            34666654

1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.

>PRK10742 putative methyltransferase; Provisional

Probab=98.21  E-value=9.7e-06  Score=77.93  Aligned_cols=71  Identities=17%  Similarity=0.186  Sum_probs=62.4

Q ss_pred             HhccCCCC--eEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHc------C--CCCcEEEEeccHHHHHHH
Q 046527           90 ISQFRPGE--TICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVN------K--VDNYVRAYNMDAREFIRQ  159 (380)
Q Consensus        90 i~~i~~g~--~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~lN------~--l~~ri~~~~~Da~e~l~~  159 (380)
                      +..+++|.  +|||++||.|..++.++..|++|+++|.+|.+...+++|++..      +  +..+++++++|+.+++..
T Consensus        81 Avglk~g~~p~VLD~TAGlG~Da~~las~G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~  160 (250)
T PRK10742         81 AVGIKGDYLPDVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTD  160 (250)
T ss_pred             HhCCCCCCCCEEEECCCCccHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhh
Confidence            34567888  9999999999999999999999999999999999999999874      2  225699999999999976


Q ss_pred             H
Q 046527          160 L  160 (380)
Q Consensus       160 l  160 (380)
                      .
T Consensus       161 ~  161 (250)
T PRK10742        161 I  161 (250)
T ss_pred             C
Confidence            4

>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []

Probab=98.20  E-value=2.6e-06  Score=88.49  Aligned_cols=61  Identities=31%  Similarity=0.415  Sum_probs=52.9

Q ss_pred             CCeEEEecCCcchhHHHHhhcC------CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHH
Q 046527           96 GETICDMFAGIGPFAIPAAQKG------CIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREF  156 (380)
Q Consensus        96 g~~VLDlfcGvG~fsl~aA~~g------~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~  156 (380)
                      +.+|+|+|||+|+++..+++.+      .+|+|||.|+.|+..+++-++.|+++++|+++++|++++
T Consensus       187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v  253 (448)
T PF05185_consen  187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREV  253 (448)
T ss_dssp             T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTS
T ss_pred             ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCC
Confidence            5789999999999998887765      399999999999999988888999999999999999886

These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....

>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]

Probab=98.20  E-value=2.3e-06  Score=85.53  Aligned_cols=80  Identities=23%  Similarity=0.388  Sum_probs=65.0

Q ss_pred             eeecChHHHHHHHH---HhccCCCCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEec-
Q 046527           76 VYWNSRLEHEHLRI---ISQFRPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNM-  151 (380)
Q Consensus        76 ff~n~rl~tE~~r~---i~~i~~g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~-  151 (380)
                      ||..-.+..+..|.   ++.+++|+.|||.|||||+|.+.+...|++|+|.|++..+++-++.|++.-++++ ..+... 
T Consensus       175 f~~p~s~~P~lAR~mVNLa~v~~G~~vlDPFcGTGgiLiEagl~G~~viG~Did~~mv~gak~Nl~~y~i~~-~~~~~~~  253 (347)
T COG1041         175 FFRPGSMDPRLARAMVNLARVKRGELVLDPFCGTGGILIEAGLMGARVIGSDIDERMVRGAKINLEYYGIED-YPVLKVL  253 (347)
T ss_pred             ccCcCCcCHHHHHHHHHHhccccCCEeecCcCCccHHHHhhhhcCceEeecchHHHHHhhhhhhhhhhCcCc-eeEEEec
Confidence            55554444444444   3678899999999999999999999999999999999999999999999999887 444554 


Q ss_pred             cHHHH
Q 046527          152 DAREF  156 (380)
Q Consensus       152 Da~e~  156 (380)
                      ||...
T Consensus       254 Da~~l  258 (347)
T COG1041         254 DATNL  258 (347)
T ss_pred             ccccC
Confidence            87654

>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2

Probab=98.20  E-value=1.4e-05  Score=74.04  Aligned_cols=63  Identities=27%  Similarity=0.346  Sum_probs=55.6

Q ss_pred             eEEEecCCcchhHHHHhhcC--CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHHHHHHh
Q 046527           98 TICDMFAGIGPFAIPAAQKG--CIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFIRQLM  161 (380)
Q Consensus        98 ~VLDlfcGvG~fsl~aA~~g--~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~l~~l~  161 (380)
                      .+||+|||.|.|.+.+|...  ..++|+|+....+..+...+...++.| +.++++|+..++..+.
T Consensus        20 l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~N-v~~~~~da~~~l~~~~   84 (195)
T PF02390_consen   20 LILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKN-VRFLRGDARELLRRLF   84 (195)
T ss_dssp             EEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSS-EEEEES-CTTHHHHHS
T ss_pred             eEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccc-eEEEEccHHHHHhhcc
Confidence            89999999999999999874  499999999999999999999999998 9999999999988764

1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....

>PRK00811 spermidine synthase; Provisional

Probab=98.20  E-value=4.5e-05  Score=74.57  Aligned_cols=66  Identities=11%  Similarity=0.001  Sum_probs=55.4

Q ss_pred             CCCCeEEEecCCcchhHHHHhhc-C-CEEEEEeCCHHHHHHHHHHHHHc--CC--CCcEEEEeccHHHHHHH
Q 046527           94 RPGETICDMFAGIGPFAIPAAQK-G-CIVFANDLNPDSVHYLKINAKVN--KV--DNYVRAYNMDAREFIRQ  159 (380)
Q Consensus        94 ~~g~~VLDlfcGvG~fsl~aA~~-g-~~V~avDlnp~Aie~a~~Na~lN--~l--~~ri~~~~~Da~e~l~~  159 (380)
                      ...++||++|||.|.++..+++. + .+|++||+++.+++.|+++....  +.  +.+++++.+|+++++..
T Consensus        75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~  146 (283)
T PRK00811         75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAE  146 (283)
T ss_pred             CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhh
Confidence            45679999999999999999886 3 49999999999999999987642  22  45799999999998743

>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2

Probab=98.19  E-value=5e-06  Score=78.03  Aligned_cols=65  Identities=23%  Similarity=0.248  Sum_probs=54.3

Q ss_pred             hccCCCCeEEEecCCcchhHHHHhhc-CC--EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHH
Q 046527           91 SQFRPGETICDMFAGIGPFAIPAAQK-GC--IVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREF  156 (380)
Q Consensus        91 ~~i~~g~~VLDlfcGvG~fsl~aA~~-g~--~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~  156 (380)
                      ..+++|++|||+|||+|.++..+|.. |.  .|+++|.++..++.|++|++..++.+ +.++.+|+...
T Consensus        68 L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~n-v~~~~gdg~~g  135 (209)
T PF01135_consen   68 LDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDN-VEVVVGDGSEG  135 (209)
T ss_dssp             TTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHS-EEEEES-GGGT
T ss_pred             HhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCc-eeEEEcchhhc
Confidence            45899999999999999999999976 32  79999999999999999999999986 99999998643

1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....

>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB

Probab=98.19  E-value=6.3e-06  Score=76.51  Aligned_cols=66  Identities=24%  Similarity=0.267  Sum_probs=52.1

Q ss_pred             HHHHhccCCCCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHH
Q 046527           87 LRIISQFRPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDARE  155 (380)
Q Consensus        87 ~r~i~~i~~g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e  155 (380)
                      +..+..+ +..++||++||.|--++.+|++|..|+|+|.|+.+++.+++-++..+++  |+....|..+
T Consensus        23 ~~a~~~~-~~g~~LDlgcG~GRNalyLA~~G~~VtAvD~s~~al~~l~~~a~~~~l~--i~~~~~Dl~~   88 (192)
T PF03848_consen   23 LEAVPLL-KPGKALDLGCGEGRNALYLASQGFDVTAVDISPVALEKLQRLAEEEGLD--IRTRVADLND   88 (192)
T ss_dssp             HHHCTTS--SSEEEEES-TTSHHHHHHHHTT-EEEEEESSHHHHHHHHHHHHHTT-T--EEEEE-BGCC
T ss_pred             HHHHhhc-CCCcEEEcCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHHHHHhhcCce--eEEEEecchh
Confidence            3333334 4569999999999999999999999999999999999999999888886  8888888643

When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.

>PTZ00146 fibrillarin; Provisional

Probab=98.19  E-value=8.1e-05  Score=73.29  Aligned_cols=61  Identities=23%  Similarity=0.199  Sum_probs=48.5

Q ss_pred             ccCCCCeEEEecCCcchhHHHHhhcC---CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHH
Q 046527           92 QFRPGETICDMFAGIGPFAIPAAQKG---CIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDARE  155 (380)
Q Consensus        92 ~i~~g~~VLDlfcGvG~fsl~aA~~g---~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e  155 (380)
                      .+.++++|||+|||+|.++.++|...   ..|+|+|+++.+.+.+..-++..  .| |.++.+|++.
T Consensus       129 ~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r--~N-I~~I~~Da~~  192 (293)
T PTZ00146        129 PIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR--PN-IVPIIEDARY  192 (293)
T ss_pred             ccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc--CC-CEEEECCccC
Confidence            46899999999999999999999873   38999999998886666554321  33 7888888763

>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]

Probab=98.16  E-value=1.8e-06  Score=83.24  Aligned_cols=62  Identities=24%  Similarity=0.243  Sum_probs=52.7

Q ss_pred             CCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCC-----cEEEEeccHHHHH
Q 046527           96 GETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKVDN-----YVRAYNMDAREFI  157 (380)
Q Consensus        96 g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~lN~l~~-----ri~~~~~Da~e~l  157 (380)
                      |..|||+|||.|.++.++|+.|+.|+|+|.++++++.|++....+-+.+     ++++.+.|+++..
T Consensus        90 g~~ilDvGCGgGLLSepLArlga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~  156 (282)
T KOG1270|consen   90 GMKILDVGCGGGLLSEPLARLGAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLT  156 (282)
T ss_pred             CceEEEeccCccccchhhHhhCCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcc
Confidence            4789999999999999999999999999999999999999977665543     3667777766553

>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional

Probab=98.15  E-value=4.4e-05  Score=71.38  Aligned_cols=53  Identities=28%  Similarity=0.335  Sum_probs=43.6

Q ss_pred             ccCCCCeEEEecCCcchhHHHHhhcC---CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHH
Q 046527           92 QFRPGETICDMFAGIGPFAIPAAQKG---CIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREF  156 (380)
Q Consensus        92 ~i~~g~~VLDlfcGvG~fsl~aA~~g---~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~  156 (380)
                      .+.+|.+|||+|||+|.++..+++..   ..|+|+|+++           .+++.+ ++++++|+.+.
T Consensus        48 ~~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-----------~~~~~~-v~~i~~D~~~~  103 (209)
T PRK11188         48 LFKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-----------MDPIVG-VDFLQGDFRDE  103 (209)
T ss_pred             cCCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-----------ccCCCC-cEEEecCCCCh
Confidence            35789999999999999999998863   4899999998           134455 88999998764

>PLN02585 magnesium protoporphyrin IX methyltransferase

Probab=98.14  E-value=6.7e-06  Score=81.73  Aligned_cols=61  Identities=31%  Similarity=0.386  Sum_probs=52.4

Q ss_pred             CCCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCC----CCcEEEEeccHHH
Q 046527           95 PGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKV----DNYVRAYNMDARE  155 (380)
Q Consensus        95 ~g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~lN~l----~~ri~~~~~Da~e  155 (380)
                      ++.+|||+|||+|.+++.+++.|.+|+|+|+++.+++.+++++.....    ...+.+..+|+.+
T Consensus       144 ~~~~VLDlGcGtG~~a~~la~~g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~  208 (315)
T PLN02585        144 AGVTVCDAGCGTGSLAIPLALEGAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLES  208 (315)
T ss_pred             CCCEEEEecCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhh
Confidence            578999999999999999999999999999999999999999876421    1247888888754

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=98.14  E-value=9.2e-06  Score=76.18  Aligned_cols=67  Identities=16%  Similarity=0.128  Sum_probs=62.0

Q ss_pred             HhccCCCCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHHH
Q 046527           90 ISQFRPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFI  157 (380)
Q Consensus        90 i~~i~~g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~l  157 (380)
                      +..+.+|++||++|||+|.-+..+|+...+|+++|..+...+.|++|++..|+.| |.++++|.....
T Consensus        67 ~L~~~~g~~VLEIGtGsGY~aAvla~l~~~V~siEr~~~L~~~A~~~L~~lg~~n-V~v~~gDG~~G~  133 (209)
T COG2518          67 LLELKPGDRVLEIGTGSGYQAAVLARLVGRVVSIERIEELAEQARRNLETLGYEN-VTVRHGDGSKGW  133 (209)
T ss_pred             HhCCCCCCeEEEECCCchHHHHHHHHHhCeEEEEEEcHHHHHHHHHHHHHcCCCc-eEEEECCcccCC
Confidence            3567899999999999999999999998899999999999999999999999998 999999987553

>COG2521 Predicted archaeal methyltransferase [General function prediction only]

Probab=98.13  E-value=4.7e-06  Score=79.24  Aligned_cols=70  Identities=23%  Similarity=0.350  Sum_probs=59.2

Q ss_pred             ccCCCCeEEEecCCcchhHHHHhhcCC-EEEEEeCCHHHHHHHHHHHHHcCCC-CcEEEEeccHHHHHHHHh
Q 046527           92 QFRPGETICDMFAGIGPFAIPAAQKGC-IVFANDLNPDSVHYLKINAKVNKVD-NYVRAYNMDAREFIRQLM  161 (380)
Q Consensus        92 ~i~~g~~VLDlfcGvG~fsl~aA~~g~-~V~avDlnp~Aie~a~~Na~lN~l~-~ri~~~~~Da~e~l~~l~  161 (380)
                      .+++|++|||.|.|-|.+++.++++|+ .|+.+|.||..++.|.-|-.--++. ..++++.||+.++++.+.
T Consensus       131 ~~~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~  202 (287)
T COG2521         131 KVKRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFD  202 (287)
T ss_pred             ccccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCC
Confidence            356799999999999999999999999 9999999999999988765333332 347999999999987764

>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]

Probab=98.12  E-value=9e-06  Score=78.81  Aligned_cols=90  Identities=16%  Similarity=0.249  Sum_probs=75.0

Q ss_pred             CCeEEEEccCceeecChHHHHHHHHHhccCCCCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCC
Q 046527           65 YGATFKLDYSLVYWNSRLEHEHLRIISQFRPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKVDN  144 (380)
Q Consensus        65 ~G~~F~id~~~ff~n~rl~tE~~r~i~~i~~g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~lN~l~~  144 (380)
                      .|..|.-|++.-+..+.+...-+...+.++++++||++|-|+|.++..+...|++|+|+|++|.++..+.+-.+--..++
T Consensus        28 ~~~kfnkd~GQHilkNp~v~~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~~kkVvA~E~Dprmvael~krv~gtp~~~  107 (315)
T KOG0820|consen   28 GGSKFNKDFGQHILKNPLVIDQIVEKADLKPTDVVLEVGPGTGNLTVKLLEAGKKVVAVEIDPRMVAELEKRVQGTPKSG  107 (315)
T ss_pred             cCcccccccchhhhcCHHHHHHHHhccCCCCCCEEEEeCCCCCHHHHHHHHhcCeEEEEecCcHHHHHHHHHhcCCCccc
Confidence            56788888888777776554444444678999999999999999999999999999999999999999988876555568


Q ss_pred             cEEEEeccHH
Q 046527          145 YVRAYNMDAR  154 (380)
Q Consensus       145 ri~~~~~Da~  154 (380)
                      +.+++.+|..
T Consensus       108 kLqV~~gD~l  117 (315)
T KOG0820|consen  108 KLQVLHGDFL  117 (315)
T ss_pred             eeeEEecccc
Confidence            8899988864

>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A

Probab=98.12  E-value=4.7e-06  Score=68.14  Aligned_cols=56  Identities=25%  Similarity=0.300  Sum_probs=47.8

Q ss_pred             EEEecCCcchhHHHHhhcC-----CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHH
Q 046527           99 ICDMFAGIGPFAIPAAQKG-----CIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREF  156 (380)
Q Consensus        99 VLDlfcGvG~fsl~aA~~g-----~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~  156 (380)
                      |||+|||+|..+..++...     .+++++|+++++++.++++....++  .++++++|+.++
T Consensus         1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~--~~~~~~~D~~~l   61 (101)
T PF13649_consen    1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGP--KVRFVQADARDL   61 (101)
T ss_dssp             -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTT--TSEEEESCTTCH
T ss_pred             CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCC--ceEEEECCHhHC
Confidence            7999999999999999874     6999999999999999999988776  489999999773

>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2

Probab=98.11  E-value=1.7e-05  Score=80.70  Aligned_cols=85  Identities=25%  Similarity=0.355  Sum_probs=62.5

Q ss_pred             CceeecChHHHHHHHH------Hh----ccCCCCeEEEecCCcchhHHHHhhc-C--CEEEEEeCCHHHHHHHHHHHHHc
Q 046527           74 SLVYWNSRLEHEHLRI------IS----QFRPGETICDMFAGIGPFAIPAAQK-G--CIVFANDLNPDSVHYLKINAKVN  140 (380)
Q Consensus        74 ~~ff~n~rl~tE~~r~------i~----~i~~g~~VLDlfcGvG~fsl~aA~~-g--~~V~avDlnp~Aie~a~~Na~lN  140 (380)
                      ..+|+|+.....|...      +.    ....+-+|||.+||+|.=|+..++- +  .+|+++|+||+|++.+++|+++|
T Consensus        18 ~~vFYNP~~~~nRDlsvl~~~~~~~~~~~~~~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N   97 (377)
T PF02005_consen   18 APVFYNPVMEFNRDLSVLAIRYLAVLKEKRKGPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELN   97 (377)
T ss_dssp             SSSS--GGGHHHHHHHHHH---HHHHHHCH-S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHC
T ss_pred             CCcccCcchhcccceeehhHHHHHHhhhhhcCCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhc
Confidence            4588898876665311      11    1223448999999999999999987 2  39999999999999999999999


Q ss_pred             CCCC-cEEEEeccHHHHHH
Q 046527          141 KVDN-YVRAYNMDAREFIR  158 (380)
Q Consensus       141 ~l~~-ri~~~~~Da~e~l~  158 (380)
                      ++++ ++++.++|+..++.
T Consensus        98 ~~~~~~~~v~~~DAn~ll~  116 (377)
T PF02005_consen   98 GLEDERIEVSNMDANVLLY  116 (377)
T ss_dssp             T-SGCCEEEEES-HHHHHC
T ss_pred             cccCceEEEehhhHHHHhh
Confidence            9998 79999999998774

1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.

>PRK10258 biotin biosynthesis protein BioC; Provisional

Probab=98.10  E-value=1.4e-05  Score=75.83  Aligned_cols=54  Identities=19%  Similarity=0.070  Sum_probs=45.2

Q ss_pred             CCCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHH
Q 046527           95 PGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAR  154 (380)
Q Consensus        95 ~g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~  154 (380)
                      ++.+|||+|||+|.++..++..+++|+++|+++.+++.++++..      .+.++++|+.
T Consensus        42 ~~~~vLDiGcG~G~~~~~l~~~~~~v~~~D~s~~~l~~a~~~~~------~~~~~~~d~~   95 (251)
T PRK10258         42 KFTHVLDAGCGPGWMSRYWRERGSQVTALDLSPPMLAQARQKDA------ADHYLAGDIE   95 (251)
T ss_pred             CCCeEEEeeCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHhhCC------CCCEEEcCcc
Confidence            46799999999999999999888999999999999999988742      1346667654

>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

Probab=98.10  E-value=3.8e-05  Score=59.62  Aligned_cols=58  Identities=26%  Similarity=0.345  Sum_probs=46.9

Q ss_pred             eEEEecCCcchhHHHHhh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHH
Q 046527           98 TICDMFAGIGPFAIPAAQ-KGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREF  156 (380)
Q Consensus        98 ~VLDlfcGvG~fsl~aA~-~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~  156 (380)
                      +++|+|||.|.++..++. ...+++++|+++.+++.++++...++.. ++.++.+|+.+.
T Consensus         1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~   59 (107)
T cd02440           1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLAD-NVEVLKGDAEEL   59 (107)
T ss_pred             CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhccccc-ceEEEEcChhhh
Confidence            489999999999999987 4569999999999999999755544443 478888877654

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).

>PLN02233 ubiquinone biosynthesis methyltransferase

Probab=98.06  E-value=1.1e-05  Score=77.66  Aligned_cols=64  Identities=17%  Similarity=0.276  Sum_probs=52.1

Q ss_pred             ccCCCCeEEEecCCcchhHHHHhhc-C--CEEEEEeCCHHHHHHHHHHHHH--cCCCCcEEEEeccHHH
Q 046527           92 QFRPGETICDMFAGIGPFAIPAAQK-G--CIVFANDLNPDSVHYLKINAKV--NKVDNYVRAYNMDARE  155 (380)
Q Consensus        92 ~i~~g~~VLDlfcGvG~fsl~aA~~-g--~~V~avDlnp~Aie~a~~Na~l--N~l~~ri~~~~~Da~e  155 (380)
                      .+.++.+|||+|||+|.++..+++. +  ++|+|+|+++++++.|+++...  .+...+++++++|+.+
T Consensus        70 ~~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~  138 (261)
T PLN02233         70 GAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATD  138 (261)
T ss_pred             CCCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEccccc
Confidence            4578899999999999999999875 3  4999999999999999887642  2223358999999864

>TIGR01444 fkbM_fam methyltransferase, FkbM family

Probab=98.05  E-value=1.1e-05  Score=69.62  Aligned_cols=56  Identities=32%  Similarity=0.358  Sum_probs=50.2

Q ss_pred             eEEEecCCcchhHHHHhhcCC--EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHH
Q 046527           98 TICDMFAGIGPFAIPAAQKGC--IVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAR  154 (380)
Q Consensus        98 ~VLDlfcGvG~fsl~aA~~g~--~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~  154 (380)
                      ++||+|||+|.+++.+++.+.  +|+++|.+|.+++.+++|++.|++.+ +.+++..+.
T Consensus         1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~~-v~~~~~al~   58 (143)
T TIGR01444         1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLPN-VVLLNAAVG   58 (143)
T ss_pred             CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCCc-EEEEEeeee
Confidence            589999999999999998765  79999999999999999999999876 888876554

Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.

>TIGR03438 probable methyltransferase

Probab=98.05  E-value=1.8e-05  Score=77.89  Aligned_cols=70  Identities=10%  Similarity=0.017  Sum_probs=56.9

Q ss_pred             HHhccCCCCeEEEecCCcchhHHHHhhc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHHHH
Q 046527           89 IISQFRPGETICDMFAGIGPFAIPAAQK---GCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFIR  158 (380)
Q Consensus        89 ~i~~i~~g~~VLDlfcGvG~fsl~aA~~---g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~l~  158 (380)
                      ++..+.++.+|||+|||+|.++..+++.   +.+|+++|+|+++++.+++++....-.-++.++++|+.+.+.
T Consensus        57 ia~~~~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~  129 (301)
T TIGR03438        57 IAAATGAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLA  129 (301)
T ss_pred             HHHhhCCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhh
Confidence            4455677889999999999999999877   469999999999999999998754322247789999987643

This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases

>PRK03612 spermidine synthase; Provisional

Probab=98.04  E-value=2.4e-05  Score=82.75  Aligned_cols=67  Identities=18%  Similarity=0.132  Sum_probs=55.1

Q ss_pred             cCCCCeEEEecCCcchhHHHHhhcC--CEEEEEeCCHHHHHHHHHHHHHc-----CCC-CcEEEEeccHHHHHHH
Q 046527           93 FRPGETICDMFAGIGPFAIPAAQKG--CIVFANDLNPDSVHYLKINAKVN-----KVD-NYVRAYNMDAREFIRQ  159 (380)
Q Consensus        93 i~~g~~VLDlfcGvG~fsl~aA~~g--~~V~avDlnp~Aie~a~~Na~lN-----~l~-~ri~~~~~Da~e~l~~  159 (380)
                      ..+.++|||+|||.|..+..+++..  .+|+++|+|+++++.+++|...+     .++ .+++++.+|++++++.
T Consensus       295 ~~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~  369 (521)
T PRK03612        295 SARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRK  369 (521)
T ss_pred             CCCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHh
Confidence            3567899999999999999988874  49999999999999999964332     233 4799999999988743

>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

Probab=98.04  E-value=2e-05  Score=73.03  Aligned_cols=64  Identities=22%  Similarity=0.262  Sum_probs=56.2

Q ss_pred             cCCCCeEEEecCCcchhHHHHhhcC---CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHH
Q 046527           93 FRPGETICDMFAGIGPFAIPAAQKG---CIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREF  156 (380)
Q Consensus        93 i~~g~~VLDlfcGvG~fsl~aA~~g---~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~  156 (380)
                      ..++.+|||+|||.|.++..++..+   .+|+++|+++.+++.+++++..+++.+.+.++.+|+.+.
T Consensus        49 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~  115 (239)
T PRK00216         49 VRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEAL  115 (239)
T ss_pred             CCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccC
Confidence            4467899999999999999998875   699999999999999999998877776789999988653

>PRK01581 speE spermidine synthase; Validated

Probab=98.02  E-value=0.00019  Score=72.71  Aligned_cols=68  Identities=19%  Similarity=0.139  Sum_probs=54.0

Q ss_pred             ccCCCCeEEEecCCcchhHHHHhhcC--CEEEEEeCCHHHHHHHHHHHH---Hc--CC-CCcEEEEeccHHHHHHH
Q 046527           92 QFRPGETICDMFAGIGPFAIPAAQKG--CIVFANDLNPDSVHYLKINAK---VN--KV-DNYVRAYNMDAREFIRQ  159 (380)
Q Consensus        92 ~i~~g~~VLDlfcGvG~fsl~aA~~g--~~V~avDlnp~Aie~a~~Na~---lN--~l-~~ri~~~~~Da~e~l~~  159 (380)
                      .....++||++|||.|.....+++..  .+|++||+++++++.|+..-.   .+  .+ +.+++++.+|+++++..
T Consensus       147 ~h~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~  222 (374)
T PRK01581        147 KVIDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSS  222 (374)
T ss_pred             hCCCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHh
Confidence            34556799999999999888888764  499999999999999996311   22  23 36899999999998753

>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase

Probab=98.01  E-value=1e-05  Score=75.36  Aligned_cols=62  Identities=13%  Similarity=0.072  Sum_probs=50.5

Q ss_pred             HHHhccCCCCeEEEecCCcchhHHHHhhc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHH
Q 046527           88 RIISQFRPGETICDMFAGIGPFAIPAAQK--GCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDARE  155 (380)
Q Consensus        88 r~i~~i~~g~~VLDlfcGvG~fsl~aA~~--g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e  155 (380)
                      +.+..+.++.+|||+|||+|.++..++..  +.+|+|+|+|+.+++.|+++.     . .+.+.++|+.+
T Consensus        36 ~~l~~~~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~-----~-~~~~~~~d~~~   99 (204)
T TIGR03587        36 RALNRLPKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYL-----P-NINIIQGSLFD   99 (204)
T ss_pred             HHHHhcCCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhC-----C-CCcEEEeeccC
Confidence            33455678889999999999999999876  569999999999999999874     2 25677787654

Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme

>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU

Probab=98.00  E-value=2.2e-05  Score=77.01  Aligned_cols=63  Identities=17%  Similarity=0.211  Sum_probs=56.8

Q ss_pred             ccCCCCeEEEecCCcchhHHHHhhcC--CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHH
Q 046527           92 QFRPGETICDMFAGIGPFAIPAAQKG--CIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDARE  155 (380)
Q Consensus        92 ~i~~g~~VLDlfcGvG~fsl~aA~~g--~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e  155 (380)
                      .+.++.+|||+|||+|.+++.++++.  .+|+++|+ |.+++.+++|+...++.++++++.+|+.+
T Consensus       146 ~~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~  210 (306)
T TIGR02716       146 KLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYK  210 (306)
T ss_pred             CCCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccC
Confidence            45677899999999999999999874  58999997 89999999999999999999999999864

Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.

>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes

Probab=98.00  E-value=1.9e-05  Score=73.36  Aligned_cols=58  Identities=14%  Similarity=0.227  Sum_probs=52.7

Q ss_pred             CeEEEecCCcchhHHHHhhcC--CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHH
Q 046527           97 ETICDMFAGIGPFAIPAAQKG--CIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAR  154 (380)
Q Consensus        97 ~~VLDlfcGvG~fsl~aA~~g--~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~  154 (380)
                      ++|||+|||.|.++..+++..  ++|+++|+++.+++.+++++...++.++++++.+|+.
T Consensus         1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~   60 (224)
T smart00828        1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSA   60 (224)
T ss_pred             CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccc
Confidence            379999999999999998763  6999999999999999999999999888999998874

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=97.99  E-value=2.1e-05  Score=81.61  Aligned_cols=61  Identities=21%  Similarity=0.232  Sum_probs=52.6

Q ss_pred             cCCCCeEEEecCCcchhHHHHhhc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHH
Q 046527           93 FRPGETICDMFAGIGPFAIPAAQK-GCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDARE  155 (380)
Q Consensus        93 i~~g~~VLDlfcGvG~fsl~aA~~-g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e  155 (380)
                      +.++.+|||+|||+|.+++.+++. +++|+|+|+++.+++.|++|+.  +...++++.++|+.+
T Consensus       264 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~--~~~~~v~~~~~d~~~  325 (475)
T PLN02336        264 LKPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAI--GRKCSVEFEVADCTK  325 (475)
T ss_pred             CCCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhh--cCCCceEEEEcCccc
Confidence            567889999999999999999875 6799999999999999999875  444568999998754

>PLN03075 nicotianamine synthase; Provisional

Probab=97.99  E-value=4.6e-05  Score=75.15  Aligned_cols=62  Identities=10%  Similarity=0.044  Sum_probs=51.5

Q ss_pred             CCCeEEEecCCcchhHH-HHhh-c--CCEEEEEeCCHHHHHHHHHHHHH-cCCCCcEEEEeccHHHH
Q 046527           95 PGETICDMFAGIGPFAI-PAAQ-K--GCIVFANDLNPDSVHYLKINAKV-NKVDNYVRAYNMDAREF  156 (380)
Q Consensus        95 ~g~~VLDlfcGvG~fsl-~aA~-~--g~~V~avDlnp~Aie~a~~Na~l-N~l~~ri~~~~~Da~e~  156 (380)
                      +.++|+|+|||-|+++. .++. .  +.+++++|+++++++.|++++.. .++.++++|..+|+.+.
T Consensus       123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~  189 (296)
T PLN03075        123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDV  189 (296)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhc
Confidence            67899999999887744 3432 2  34899999999999999999964 78988999999999763

>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional

Probab=97.92  E-value=3.5e-05  Score=76.02  Aligned_cols=66  Identities=17%  Similarity=0.088  Sum_probs=57.4

Q ss_pred             cCCCCeEEEecCCcchhHHHHhhcC---CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHHHHHHh
Q 046527           93 FRPGETICDMFAGIGPFAIPAAQKG---CIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFIRQLM  161 (380)
Q Consensus        93 i~~g~~VLDlfcGvG~fsl~aA~~g---~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~l~~l~  161 (380)
                      ..+|.+++|++||.|..+..+++..   .+|+|+|.+|++++.+++.+..   .++++++++|..++...+.
T Consensus        17 ~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~---~~ri~~i~~~f~~l~~~l~   85 (296)
T PRK00050         17 IKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP---FGRFTLVHGNFSNLKEVLA   85 (296)
T ss_pred             CCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc---CCcEEEEeCCHHHHHHHHH
Confidence            4678899999999999999999874   5999999999999999988754   4579999999999876654

>TIGR00417 speE spermidine synthase

Probab=97.92  E-value=0.00035  Score=67.64  Aligned_cols=66  Identities=12%  Similarity=-0.010  Sum_probs=54.0

Q ss_pred             CCCCeEEEecCCcchhHHHHhhcC--CEEEEEeCCHHHHHHHHHHHHHcC--C-CCcEEEEeccHHHHHHH
Q 046527           94 RPGETICDMFAGIGPFAIPAAQKG--CIVFANDLNPDSVHYLKINAKVNK--V-DNYVRAYNMDAREFIRQ  159 (380)
Q Consensus        94 ~~g~~VLDlfcGvG~fsl~aA~~g--~~V~avDlnp~Aie~a~~Na~lN~--l-~~ri~~~~~Da~e~l~~  159 (380)
                      ...++||++|||.|.++..+++..  .+|+++|+++.+++.++++....+  + ..+++++.+|++++++.
T Consensus        71 ~~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~  141 (270)
T TIGR00417        71 PNPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLAD  141 (270)
T ss_pred             CCCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHh
Confidence            345699999999999998888774  489999999999999999875432  2 24688999999998754

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.

>PRK14103 trans-aconitate 2-methyltransferase; Provisional

Probab=97.91  E-value=2e-05  Score=75.12  Aligned_cols=56  Identities=23%  Similarity=0.294  Sum_probs=47.9

Q ss_pred             cCCCCeEEEecCCcchhHHHHhhc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHH
Q 046527           93 FRPGETICDMFAGIGPFAIPAAQK--GCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREF  156 (380)
Q Consensus        93 i~~g~~VLDlfcGvG~fsl~aA~~--g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~  156 (380)
                      ..++.+|||+|||+|.++..++..  +++|+|+|+++.+++.|+++        .++++++|+.++
T Consensus        27 ~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~   84 (255)
T PRK14103         27 AERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER--------GVDARTGDVRDW   84 (255)
T ss_pred             CCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc--------CCcEEEcChhhC
Confidence            357889999999999999999987  56999999999999998763        267888998754

>PLN02366 spermidine synthase

Probab=97.91  E-value=0.00012  Score=72.64  Aligned_cols=67  Identities=13%  Similarity=0.008  Sum_probs=56.3

Q ss_pred             cCCCCeEEEecCCcchhHHHHhhcC--CEEEEEeCCHHHHHHHHHHHHHc--CCC-CcEEEEeccHHHHHHH
Q 046527           93 FRPGETICDMFAGIGPFAIPAAQKG--CIVFANDLNPDSVHYLKINAKVN--KVD-NYVRAYNMDAREFIRQ  159 (380)
Q Consensus        93 i~~g~~VLDlfcGvG~fsl~aA~~g--~~V~avDlnp~Aie~a~~Na~lN--~l~-~ri~~~~~Da~e~l~~  159 (380)
                      ....++||++|||.|.++..+++..  .+|+.+|+++..++.+++.....  +++ .+++++.+|++++++.
T Consensus        89 ~~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~  160 (308)
T PLN02366         89 IPNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKN  160 (308)
T ss_pred             CCCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhh
Confidence            3567899999999999999998874  38999999999999999987542  343 4899999999999854

>PRK01683 trans-aconitate 2-methyltransferase; Provisional

Probab=97.91  E-value=3.4e-05  Score=73.36  Aligned_cols=58  Identities=10%  Similarity=0.092  Sum_probs=49.5

Q ss_pred             cCCCCeEEEecCCcchhHHHHhhc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHH
Q 046527           93 FRPGETICDMFAGIGPFAIPAAQK--GCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREF  156 (380)
Q Consensus        93 i~~g~~VLDlfcGvG~fsl~aA~~--g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~  156 (380)
                      +.++.+|||+|||+|.++..++..  +++|+|+|+++.+++.++++.     . ++.++.+|+.++
T Consensus        29 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~-----~-~~~~~~~d~~~~   88 (258)
T PRK01683         29 LENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL-----P-DCQFVEADIASW   88 (258)
T ss_pred             CcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC-----C-CCeEEECchhcc
Confidence            467889999999999999999976  469999999999999999874     2 378888998754

>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional

Probab=97.90  E-value=3e-05  Score=74.88  Aligned_cols=60  Identities=18%  Similarity=0.190  Sum_probs=51.3

Q ss_pred             ccCCCCeEEEecCCcchhHHHHhhc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHH
Q 046527           92 QFRPGETICDMFAGIGPFAIPAAQK-GCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAR  154 (380)
Q Consensus        92 ~i~~g~~VLDlfcGvG~fsl~aA~~-g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~  154 (380)
                      .+.++.+|||+|||+|.++..++.. +++|+++|+++.+++.|+++...   .+++.+.++|+.
T Consensus        49 ~l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~---~~~i~~~~~D~~  109 (263)
T PTZ00098         49 ELNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSD---KNKIEFEANDIL  109 (263)
T ss_pred             CCCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCc---CCceEEEECCcc
Confidence            4578899999999999999988864 67999999999999999988653   345889988875

>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase

Probab=97.89  E-value=5.3e-05  Score=70.18  Aligned_cols=62  Identities=19%  Similarity=0.218  Sum_probs=55.4

Q ss_pred             CCCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHHH
Q 046527           95 PGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFI  157 (380)
Q Consensus        95 ~g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~l  157 (380)
                      .+.+|||+|||+|.++..+++.+..|+++|+++.+++.+++++..+++. .+.+..+|+.++.
T Consensus        45 ~~~~vLdlG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~-~~~~~~~d~~~~~  106 (224)
T TIGR01983        45 FGLRVLDVGCGGGLLSEPLARLGANVTGIDASEENIEVAKLHAKKDPLL-KIEYRCTSVEDLA  106 (224)
T ss_pred             CCCeEEEECCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEeCCHHHhh
Confidence            4789999999999999999988889999999999999999999888775 3788999987764

This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.

>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]

Probab=97.89  E-value=0.00014  Score=69.25  Aligned_cols=64  Identities=20%  Similarity=0.214  Sum_probs=59.5

Q ss_pred             CeEEEecCCcchhHHHHhhcCC--EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHHHHHHh
Q 046527           97 ETICDMFAGIGPFAIPAAQKGC--IVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFIRQLM  161 (380)
Q Consensus        97 ~~VLDlfcGvG~fsl~aA~~g~--~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~l~~l~  161 (380)
                      .++||+|||.|.|.+.+|+..-  ..+|||+....+..|..-+...++.| +.++++||.+++..+.
T Consensus        50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~N-lri~~~DA~~~l~~~~  115 (227)
T COG0220          50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKN-LRLLCGDAVEVLDYLI  115 (227)
T ss_pred             cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCc-EEEEcCCHHHHHHhcC
Confidence            4899999999999999999864  89999999999999999999999986 9999999999998875

>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional

Probab=97.86  E-value=7.6e-05  Score=74.33  Aligned_cols=63  Identities=16%  Similarity=0.125  Sum_probs=50.0

Q ss_pred             CCCCeEEEecCCcchhHHHHhhcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHH
Q 046527           94 RPGETICDMFAGIGPFAIPAAQKGC-IVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREF  156 (380)
Q Consensus        94 ~~g~~VLDlfcGvG~fsl~aA~~g~-~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~  156 (380)
                      .+|.+|||+|||.|.++..++..|+ .|+|+|.++.++..++......+...++.++.+|+.+.
T Consensus       121 l~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~l  184 (322)
T PRK15068        121 LKGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQL  184 (322)
T ss_pred             CCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHC
Confidence            4688999999999999999998876 79999999998876554443333344589999988654

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=97.86  E-value=5.1e-05  Score=77.35  Aligned_cols=60  Identities=23%  Similarity=0.305  Sum_probs=51.6

Q ss_pred             ccCCCCeEEEecCCcchhHHHHhhc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHH
Q 046527           92 QFRPGETICDMFAGIGPFAIPAAQK-GCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDARE  155 (380)
Q Consensus        92 ~i~~g~~VLDlfcGvG~fsl~aA~~-g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e  155 (380)
                      .+.+|.+|||+|||+|.+++.+++. +++|+|+|+++++++.+++++.  ++  .+++..+|+.+
T Consensus       164 ~l~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~--~l--~v~~~~~D~~~  224 (383)
T PRK11705        164 QLKPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCA--GL--PVEIRLQDYRD  224 (383)
T ss_pred             CCCCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhc--cC--eEEEEECchhh
Confidence            4578999999999999999999975 7799999999999999999984  33  27788888764

>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]

Probab=97.85  E-value=2.5e-05  Score=77.75  Aligned_cols=62  Identities=19%  Similarity=0.245  Sum_probs=56.5

Q ss_pred             CCCCeEEEecCCcchhHHHHhhcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHH
Q 046527           94 RPGETICDMFAGIGPFAIPAAQKGC-IVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREF  156 (380)
Q Consensus        94 ~~g~~VLDlfcGvG~fsl~aA~~g~-~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~  156 (380)
                      ..|++|||+|||+|.++..+|+.|+ +|+|||-+. +.++|+.=++-|++.+||.++.|.+++.
T Consensus       176 F~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS~-MAqyA~~Lv~~N~~~~rItVI~GKiEdi  238 (517)
T KOG1500|consen  176 FQDKIVLDVGAGSGILSFFAAQAGAKKVYAVEASE-MAQYARKLVASNNLADRITVIPGKIEDI  238 (517)
T ss_pred             cCCcEEEEecCCccHHHHHHHHhCcceEEEEehhH-HHHHHHHHHhcCCccceEEEccCccccc
Confidence            4688999999999999999999987 999999764 7789999999999999999999998775

>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional

Probab=97.84  E-value=0.00011  Score=68.68  Aligned_cols=63  Identities=17%  Similarity=0.159  Sum_probs=55.7

Q ss_pred             cCCCCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHHH
Q 046527           93 FRPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFI  157 (380)
Q Consensus        93 i~~g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~l  157 (380)
                      ..++..|||+|||+|.++..+++.+++|+++|+++.+++.+++++..+++  .+.+..+|+.++.
T Consensus        46 ~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~  108 (233)
T PRK05134         46 GLFGKRVLDVGCGGGILSESMARLGADVTGIDASEENIEVARLHALESGL--KIDYRQTTAEELA  108 (233)
T ss_pred             CCCCCeEEEeCCCCCHHHHHHHHcCCeEEEEcCCHHHHHHHHHHHHHcCC--ceEEEecCHHHhh
Confidence            34688999999999999999999988999999999999999999988776  3788888887765

>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases

Probab=97.83  E-value=4.6e-05  Score=69.16  Aligned_cols=63  Identities=25%  Similarity=0.329  Sum_probs=45.5

Q ss_pred             ccCCCCeEEEecCCcchhHHHHhhc--CCEEEEEeCCHHHHHHHHHHHHHcC--CCCcEEEEeccHHH
Q 046527           92 QFRPGETICDMFAGIGPFAIPAAQK--GCIVFANDLNPDSVHYLKINAKVNK--VDNYVRAYNMDARE  155 (380)
Q Consensus        92 ~i~~g~~VLDlfcGvG~fsl~aA~~--g~~V~avDlnp~Aie~a~~Na~lN~--l~~ri~~~~~Da~e  155 (380)
                      ...++.+||+||||+|..|+.+++.  +++|+.-|.++ +++.++.|++.|+  ...++.+...|..+
T Consensus        42 ~~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~  108 (173)
T PF10294_consen   42 ELFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGD  108 (173)
T ss_dssp             GGTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS
T ss_pred             hhcCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecC
Confidence            4567899999999999999999998  56999999999 9999999999998  56668877766543

They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.

>PLN02589 caffeoyl-CoA O-methyltransferase

Probab=97.82  E-value=0.00016  Score=69.65  Aligned_cols=81  Identities=12%  Similarity=0.066  Sum_probs=68.4

Q ss_pred             hHHHHHHHHHhccCCCCeEEEecCCcchhHHHHhhc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHHH
Q 046527           81 RLEHEHLRIISQFRPGETICDMFAGIGPFAIPAAQK---GCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFI  157 (380)
Q Consensus        81 rl~tE~~r~i~~i~~g~~VLDlfcGvG~fsl~aA~~---g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~l  157 (380)
                      ......+..+....+-++||++|+++|.-++.+|..   +.+|+++|.+++.++.|++|++..|+.++|+++.+|+.+.+
T Consensus        65 ~~~g~lL~~l~~~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L  144 (247)
T PLN02589         65 ADEGQFLNMLLKLINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVL  144 (247)
T ss_pred             HHHHHHHHHHHHHhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHH
Confidence            333344444455556779999999999999988864   45999999999999999999999999999999999999999


Q ss_pred             HHHh
Q 046527          158 RQLM  161 (380)
Q Consensus       158 ~~l~  161 (380)
                      .++.
T Consensus       145 ~~l~  148 (247)
T PLN02589        145 DQMI  148 (247)
T ss_pred             HHHH
Confidence            9876

>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=97.82  E-value=1.9e-05  Score=62.11  Aligned_cols=53  Identities=25%  Similarity=0.308  Sum_probs=43.7

Q ss_pred             EEecCCcchhHHHHhhc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHH
Q 046527          100 CDMFAGIGPFAIPAAQK-GCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREF  156 (380)
Q Consensus       100 LDlfcGvG~fsl~aA~~-g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~  156 (380)
                      ||+|||.|.++..+++. +.+|+++|.++.+++.++++....+    +.+.++|+.++
T Consensus         1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~~~----~~~~~~d~~~l   54 (95)
T PF08241_consen    1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKNEG----VSFRQGDAEDL   54 (95)
T ss_dssp             EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTTST----EEEEESBTTSS
T ss_pred             CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhcccccC----chheeehHHhC
Confidence            79999999999999999 7799999999999999999875443    55888886554

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....

>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed

Probab=97.73  E-value=0.00077  Score=70.61  Aligned_cols=65  Identities=25%  Similarity=0.213  Sum_probs=58.4

Q ss_pred             ccCCCCeEEEecCCcchhHHHHhhcC---CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHHH
Q 046527           92 QFRPGETICDMFAGIGPFAIPAAQKG---CIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFI  157 (380)
Q Consensus        92 ~i~~g~~VLDlfcGvG~fsl~aA~~g---~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~l  157 (380)
                      ...+|++|||+|||.|.=+.++|..-   ..|+|+|+++.-++.+++|++..|+.+ +.+.+.|+..+.
T Consensus       110 ~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~n-v~v~~~D~~~~~  177 (470)
T PRK11933        110 DDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSN-VALTHFDGRVFG  177 (470)
T ss_pred             CCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCe-EEEEeCchhhhh
Confidence            56799999999999999999998752   389999999999999999999999987 899999988653

>PRK08317 hypothetical protein; Provisional

Probab=97.72  E-value=0.00017  Score=66.36  Aligned_cols=63  Identities=22%  Similarity=0.152  Sum_probs=51.4

Q ss_pred             hccCCCCeEEEecCCcchhHHHHhhcC---CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHH
Q 046527           91 SQFRPGETICDMFAGIGPFAIPAAQKG---CIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDARE  155 (380)
Q Consensus        91 ~~i~~g~~VLDlfcGvG~fsl~aA~~g---~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e  155 (380)
                      ..+.++.+|||+|||+|.++..++...   ++|+++|+++.+++.++++..  .....+.+..+|+.+
T Consensus        15 ~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~--~~~~~~~~~~~d~~~   80 (241)
T PRK08317         15 LAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAA--GLGPNVEFVRGDADG   80 (241)
T ss_pred             cCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhh--CCCCceEEEeccccc
Confidence            356788999999999999999998763   599999999999999999833  223358888888754

>PRK04148 hypothetical protein; Provisional

Probab=97.71  E-value=6e-05  Score=66.20  Aligned_cols=54  Identities=20%  Similarity=0.134  Sum_probs=45.9

Q ss_pred             CCCeEEEecCCcch-hHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHH
Q 046527           95 PGETICDMFAGIGP-FAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREF  156 (380)
Q Consensus        95 ~g~~VLDlfcGvG~-fsl~aA~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~  156 (380)
                      ++.+|+|+|||.|. ++..+++.|..|+|+|+||.+++.++++.        +.++.+|+.+-
T Consensus        16 ~~~kileIG~GfG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~~--------~~~v~dDlf~p   70 (134)
T PRK04148         16 KNKKIVELGIGFYFKVAKKLKESGFDVIVIDINEKAVEKAKKLG--------LNAFVDDLFNP   70 (134)
T ss_pred             cCCEEEEEEecCCHHHHHHHHHCCCEEEEEECCHHHHHHHHHhC--------CeEEECcCCCC
Confidence            45789999999996 99999999999999999999999887762        46788887643

>TIGR00478 tly hemolysin TlyA family protein

Probab=97.70  E-value=0.00011  Score=70.01  Aligned_cols=55  Identities=22%  Similarity=0.259  Sum_probs=42.8

Q ss_pred             ecChHHHHHHHHHhcc---CCCCeEEEecCCcchhHHHHhhcCC-EEEEEeCCHHHHHH
Q 046527           78 WNSRLEHEHLRIISQF---RPGETICDMFAGIGPFAIPAAQKGC-IVFANDLNPDSVHY  132 (380)
Q Consensus        78 ~n~rl~tE~~r~i~~i---~~g~~VLDlfcGvG~fsl~aA~~g~-~V~avDlnp~Aie~  132 (380)
                      +.+|-......++..+   .+|.+|||+|||+|.|+.++++.|+ +|+|+|+++.++..
T Consensus        55 ~vsr~~~kL~~~l~~~~~~~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~  113 (228)
T TIGR00478        55 FVSRGGEKLKEALEEFNIDVKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAE  113 (228)
T ss_pred             hhhhhHHHHHHHHHhcCCCCCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHH
Confidence            4455444444555443   4688999999999999999999976 89999999987765

Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).

>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases

Probab=97.70  E-value=0.00017  Score=66.09  Aligned_cols=61  Identities=20%  Similarity=0.266  Sum_probs=51.6

Q ss_pred             cCCCCeEEEecCCcchhHHHHhhcCC---EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHH
Q 046527           93 FRPGETICDMFAGIGPFAIPAAQKGC---IVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREF  156 (380)
Q Consensus        93 i~~g~~VLDlfcGvG~fsl~aA~~g~---~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~  156 (380)
                      ..++.+|||+|||.|.++..+++...   +++++|+++.+++.++++..   ..+++.++.+|+.+.
T Consensus        37 ~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~---~~~~i~~~~~d~~~~  100 (223)
T TIGR01934        37 VFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE---LPLNIEFIQADAEAL  100 (223)
T ss_pred             cCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc---cCCCceEEecchhcC
Confidence            34788999999999999999987753   89999999999999999875   344588999988653

Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.

>PLN02823 spermine synthase

Probab=97.67  E-value=0.00098  Score=66.97  Aligned_cols=64  Identities=22%  Similarity=0.224  Sum_probs=54.5

Q ss_pred             CCCeEEEecCCcchhHHHHhhcC--CEEEEEeCCHHHHHHHHHHHHHcC--C-CCcEEEEeccHHHHHH
Q 046527           95 PGETICDMFAGIGPFAIPAAQKG--CIVFANDLNPDSVHYLKINAKVNK--V-DNYVRAYNMDAREFIR  158 (380)
Q Consensus        95 ~g~~VLDlfcGvG~fsl~aA~~g--~~V~avDlnp~Aie~a~~Na~lN~--l-~~ri~~~~~Da~e~l~  158 (380)
                      ..++||.+|+|.|..+..+++..  .+|++||+++..++.+++....++  + +.+++++.+|++++++
T Consensus       103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~  171 (336)
T PLN02823        103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELE  171 (336)
T ss_pred             CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHh
Confidence            45789999999999999888753  489999999999999999986553  2 3689999999999884

>TIGR00452 methyltransferase, putative

Probab=97.66  E-value=0.00023  Score=70.87  Aligned_cols=63  Identities=16%  Similarity=0.046  Sum_probs=48.8

Q ss_pred             cCCCCeEEEecCCcchhHHHHhhcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHH
Q 046527           93 FRPGETICDMFAGIGPFAIPAAQKGC-IVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDARE  155 (380)
Q Consensus        93 i~~g~~VLDlfcGvG~fsl~aA~~g~-~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e  155 (380)
                      ..+|++|||+|||+|.++..++..|+ .|+|+|.++.++..++...+..+...++.+..+|+.+
T Consensus       119 ~~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~  182 (314)
T TIGR00452       119 PLKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQ  182 (314)
T ss_pred             CCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHH
Confidence            45689999999999999999988886 7999999999988765443332323457888887654

Known examples to date are restricted to the proteobacteria.

>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e

Probab=97.65  E-value=0.00011  Score=70.82  Aligned_cols=63  Identities=22%  Similarity=0.309  Sum_probs=53.9

Q ss_pred             hccCCCCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHH
Q 046527           91 SQFRPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREF  156 (380)
Q Consensus        91 ~~i~~g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~  156 (380)
                      ..+.+++.|+|+|+|.|.++..++..+.+|+++|+++..++.+++...   ...+++++++|+.++
T Consensus        26 ~~~~~~~~VlEiGpG~G~lT~~L~~~~~~v~~vE~d~~~~~~L~~~~~---~~~~~~vi~~D~l~~   88 (262)
T PF00398_consen   26 LDLSEGDTVLEIGPGPGALTRELLKRGKRVIAVEIDPDLAKHLKERFA---SNPNVEVINGDFLKW   88 (262)
T ss_dssp             HTCGTTSEEEEESSTTSCCHHHHHHHSSEEEEEESSHHHHHHHHHHCT---TCSSEEEEES-TTTS
T ss_pred             cCCCCCCEEEEeCCCCccchhhHhcccCcceeecCcHhHHHHHHHHhh---hcccceeeecchhcc
Confidence            345689999999999999999999999999999999999999998765   234699999998753

g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....

>PRK05785 hypothetical protein; Provisional

Probab=97.63  E-value=0.00013  Score=68.88  Aligned_cols=43  Identities=16%  Similarity=0.157  Sum_probs=38.7

Q ss_pred             CCCCeEEEecCCcchhHHHHhhc-CCEEEEEeCCHHHHHHHHHH
Q 046527           94 RPGETICDMFAGIGPFAIPAAQK-GCIVFANDLNPDSVHYLKIN  136 (380)
Q Consensus        94 ~~g~~VLDlfcGvG~fsl~aA~~-g~~V~avDlnp~Aie~a~~N  136 (380)
                      .++.+|||+|||+|.++..+++. +.+|+|+|+|+++++.|++.
T Consensus        50 ~~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~~   93 (226)
T PRK05785         50 GRPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLVA   93 (226)
T ss_pred             CCCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHhc
Confidence            45789999999999999999988 57999999999999998763

>PRK06922 hypothetical protein; Provisional

Probab=97.61  E-value=0.00025  Score=76.56  Aligned_cols=64  Identities=19%  Similarity=0.198  Sum_probs=53.3

Q ss_pred             hccCCCCeEEEecCCcchhHHHHhhc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHH
Q 046527           91 SQFRPGETICDMFAGIGPFAIPAAQK--GCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREF  156 (380)
Q Consensus        91 ~~i~~g~~VLDlfcGvG~fsl~aA~~--g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~  156 (380)
                      ..+.++.+|||+|||+|.++..++..  +.+|+|+|+++.+++.|+.++..++.  ++.++++|+.++
T Consensus       414 ~d~~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g~--~ie~I~gDa~dL  479 (677)
T PRK06922        414 LDYIKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEGR--SWNVIKGDAINL  479 (677)
T ss_pred             hhhcCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCC--CeEEEEcchHhC
Confidence            34457889999999999999888865  45999999999999999999876553  478899998763

>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins

Probab=97.61  E-value=0.00018  Score=67.37  Aligned_cols=61  Identities=20%  Similarity=0.237  Sum_probs=53.3

Q ss_pred             EEEecCCcchhHHHHhhcCC--EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHHHHH
Q 046527           99 ICDMFAGIGPFAIPAAQKGC--IVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFIRQ  159 (380)
Q Consensus        99 VLDlfcGvG~fsl~aA~~g~--~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~l~~  159 (380)
                      |+|+||--|.+++.+.+.|.  +|+|+|+++..++.|++|++.+++.+++++..+|..+.+..
T Consensus         1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~   63 (205)
T PF04816_consen    1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKP   63 (205)
T ss_dssp             EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--G
T ss_pred             CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCC
Confidence            78999999999999999986  89999999999999999999999999999999999887643

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.

>KOG1271 consensus Methyltransferases [General function prediction only]

Probab=97.60  E-value=0.0002  Score=66.06  Aligned_cols=63  Identities=17%  Similarity=0.226  Sum_probs=56.3

Q ss_pred             cCCCC-eEEEecCCcchhHHHHhhcCC--EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHH
Q 046527           93 FRPGE-TICDMFAGIGPFAIPAAQKGC--IVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDARE  155 (380)
Q Consensus        93 i~~g~-~VLDlfcGvG~fsl~aA~~g~--~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e  155 (380)
                      +.+.. +|||||||-|.+-..+++.|-  ..+|+|-++.|++.|+.-++.++++|.|++.+.|+.+
T Consensus        64 v~~~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~  129 (227)
T KOG1271|consen   64 VSKQADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITD  129 (227)
T ss_pred             hcccccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccC
Confidence            34443 999999999999999999875  6999999999999999999999999999999999865

>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=97.59  E-value=0.00045  Score=63.67  Aligned_cols=62  Identities=23%  Similarity=0.311  Sum_probs=53.7

Q ss_pred             CCeEEEecCCcchhHHHHhhc-C--CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHHHHH
Q 046527           96 GETICDMFAGIGPFAIPAAQK-G--CIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFIRQ  159 (380)
Q Consensus        96 g~~VLDlfcGvG~fsl~aA~~-g--~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~l~~  159 (380)
                      .+.++++|||+|..+-++++. +  ...++.|+||.|++...+.++.|+..  +.+++.|....|+.
T Consensus        44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~--~~~V~tdl~~~l~~  108 (209)
T KOG3191|consen   44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVH--IDVVRTDLLSGLRN  108 (209)
T ss_pred             ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCc--cceeehhHHhhhcc
Confidence            678999999999999999976 2  37899999999999999999999975  67888888776643

>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family

Probab=97.59  E-value=0.00013  Score=76.96  Aligned_cols=66  Identities=11%  Similarity=0.095  Sum_probs=48.4

Q ss_pred             eeecChHHHHHH-HHHh-ccC-----CCCeEEEecCCcchhHHHHhhcC----------CEEEEEeCCHHHHHHHHHHHH
Q 046527           76 VYWNSRLEHEHL-RIIS-QFR-----PGETICDMFAGIGPFAIPAAQKG----------CIVFANDLNPDSVHYLKINAK  138 (380)
Q Consensus        76 ff~n~rl~tE~~-r~i~-~i~-----~g~~VLDlfcGvG~fsl~aA~~g----------~~V~avDlnp~Aie~a~~Na~  138 (380)
                      -|+.+...++.+ ..+. ...     ...+|||.+||+|.|.+.++...          ..++|+|+++.+++.++.|+.
T Consensus         5 qfyTP~~ia~~mv~~~~~~~~~~~~~~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~   84 (524)
T TIGR02987         5 TFFTPPDIAKAMVANLVNEIGKNDKSTKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLG   84 (524)
T ss_pred             ccCCcHHHHHHHHHHHhhhcchhhcccceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHh
Confidence            355666555544 3332 221     34589999999999999988542          378999999999999999987


Q ss_pred             HcC
Q 046527          139 VNK  141 (380)
Q Consensus       139 lN~  141 (380)
                      ..+
T Consensus        85 ~~~   87 (524)
T TIGR02987        85 EFA   87 (524)
T ss_pred             hcC
Confidence            665

Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.

>TIGR02081 metW methionine biosynthesis protein MetW

Probab=97.56  E-value=0.00025  Score=64.91  Aligned_cols=60  Identities=18%  Similarity=0.190  Sum_probs=47.7

Q ss_pred             HHhccCCCCeEEEecCCcchhHHHHhhc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHH
Q 046527           89 IISQFRPGETICDMFAGIGPFAIPAAQK-GCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREF  156 (380)
Q Consensus        89 ~i~~i~~g~~VLDlfcGvG~fsl~aA~~-g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~  156 (380)
                      +...+.++.+|||+|||+|.++..++.. +..++++|+++++++.++.+        .++++++|+.+.
T Consensus         7 i~~~i~~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~~--------~~~~~~~d~~~~   67 (194)
T TIGR02081         7 ILNLIPPGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVAR--------GVNVIQGDLDEG   67 (194)
T ss_pred             HHHhcCCCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHHc--------CCeEEEEEhhhc
Confidence            3344667889999999999999988765 45899999999999887642        257888888654

This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.

>PRK06202 hypothetical protein; Provisional

Probab=97.56  E-value=0.00023  Score=66.83  Aligned_cols=56  Identities=27%  Similarity=0.242  Sum_probs=44.1

Q ss_pred             CCCCeEEEecCCcchhHHHHhhc----C--CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccH
Q 046527           94 RPGETICDMFAGIGPFAIPAAQK----G--CIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDA  153 (380)
Q Consensus        94 ~~g~~VLDlfcGvG~fsl~aA~~----g--~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da  153 (380)
                      .++.+|||+|||+|.++..++..    |  .+|+|+|+++.+++.|+++...++    +.+..+|+
T Consensus        59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~----~~~~~~~~  120 (232)
T PRK06202         59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPG----VTFRQAVS  120 (232)
T ss_pred             CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCC----CeEEEEec
Confidence            56779999999999999988752    3  499999999999999998875544    34444444

>COG4122 Predicted O-methyltransferase [General function prediction only]

Probab=97.52  E-value=0.00076  Score=63.94  Aligned_cols=76  Identities=16%  Similarity=0.146  Sum_probs=66.5

Q ss_pred             HHHHHHHhccCCCCeEEEecCCcchhHHHHhhc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEe-ccHHHHHHH
Q 046527           84 HEHLRIISQFRPGETICDMFAGIGPFAIPAAQK---GCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYN-MDAREFIRQ  159 (380)
Q Consensus        84 tE~~r~i~~i~~g~~VLDlfcGvG~fsl~aA~~---g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~-~Da~e~l~~  159 (380)
                      ...++.+....+.++||++|++.|.-++.+|..   ..+++++|.|++.++.|++|++..|++++|+++. +|+.+.+..
T Consensus        48 g~~L~~L~~~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~  127 (219)
T COG4122          48 GALLRLLARLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSR  127 (219)
T ss_pred             HHHHHHHHHhcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHh
Confidence            344566667778899999999999999999875   2389999999999999999999999999999999 699998876

>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C

Probab=97.52  E-value=0.00032  Score=60.70  Aligned_cols=41  Identities=27%  Similarity=0.546  Sum_probs=38.4

Q ss_pred             ccCCCCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHH
Q 046527           92 QFRPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHY  132 (380)
Q Consensus        92 ~i~~g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~  132 (380)
                      ...++.+|||+|||.|.++..++..|.+|+++|+++.+++.
T Consensus        19 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~g~D~~~~~~~~   59 (161)
T PF13489_consen   19 RLKPGKRVLDIGCGTGSFLRALAKRGFEVTGVDISPQMIEK   59 (161)
T ss_dssp             CTTTTSEEEEESSTTSHHHHHHHHTTSEEEEEESSHHHHHH
T ss_pred             ccCCCCEEEEEcCCCCHHHHHHHHhCCEEEEEECCHHHHhh
Confidence            36788999999999999999999999999999999999998

...

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=97.52  E-value=0.00028  Score=73.24  Aligned_cols=58  Identities=24%  Similarity=0.252  Sum_probs=48.0

Q ss_pred             CCCCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHH
Q 046527           94 RPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAR  154 (380)
Q Consensus        94 ~~g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~  154 (380)
                      .++.+|||+|||+|.++..+++.+.+|+|+|.++.+++.++.   .++...+++++++|+.
T Consensus        36 ~~~~~vLDlGcG~G~~~~~la~~~~~v~giD~s~~~l~~a~~---~~~~~~~i~~~~~d~~   93 (475)
T PLN02336         36 YEGKSVLELGAGIGRFTGELAKKAGQVIALDFIESVIKKNES---INGHYKNVKFMCADVT   93 (475)
T ss_pred             cCCCEEEEeCCCcCHHHHHHHhhCCEEEEEeCCHHHHHHHHH---HhccCCceEEEEeccc
Confidence            357799999999999999999988899999999999987654   3443345888888885

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=97.51  E-value=0.00081  Score=71.03  Aligned_cols=65  Identities=12%  Similarity=0.159  Sum_probs=56.2

Q ss_pred             CCCeEEEecCCcchhHHHHhhcC--CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHHHHHH
Q 046527           95 PGETICDMFAGIGPFAIPAAQKG--CIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFIRQL  160 (380)
Q Consensus        95 ~g~~VLDlfcGvG~fsl~aA~~g--~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~l~~l  160 (380)
                      .+..+||+|||.|.|.+.+|...  ..++|+|+....+..+.+.+...++.| +.++++|+..+...+
T Consensus       347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N-~~~~~~~~~~~~~~~  413 (506)
T PRK01544        347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITN-FLLFPNNLDLILNDL  413 (506)
T ss_pred             CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCe-EEEEcCCHHHHHHhc
Confidence            46799999999999999999885  489999999999999999998899987 889999876655443

>PLN02490 MPBQ/MSBQ methyltransferase

Probab=97.43  E-value=0.00047  Score=69.38  Aligned_cols=58  Identities=16%  Similarity=0.137  Sum_probs=48.8

Q ss_pred             CCCCeEEEecCCcchhHHHHhhc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHH
Q 046527           94 RPGETICDMFAGIGPFAIPAAQK--GCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDARE  155 (380)
Q Consensus        94 ~~g~~VLDlfcGvG~fsl~aA~~--g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e  155 (380)
                      .++.+|||+|||+|.+++.+++.  +.+|+++|.++.+++.|+++...+    +++++.+|+.+
T Consensus       112 ~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~~----~i~~i~gD~e~  171 (340)
T PLN02490        112 DRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLK----ECKIIEGDAED  171 (340)
T ss_pred             CCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhcc----CCeEEeccHHh
Confidence            46789999999999999988875  359999999999999999987532    36788888864

>TIGR02072 BioC biotin biosynthesis protein BioC

Probab=97.41  E-value=0.00054  Score=63.22  Aligned_cols=56  Identities=16%  Similarity=0.093  Sum_probs=46.8

Q ss_pred             CCCeEEEecCCcchhHHHHhhcCC--EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHH
Q 046527           95 PGETICDMFAGIGPFAIPAAQKGC--IVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDARE  155 (380)
Q Consensus        95 ~g~~VLDlfcGvG~fsl~aA~~g~--~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e  155 (380)
                      .+.+|||+|||+|.++..++..+.  +|+++|+++.+++.++.+..     .++.++.+|+.+
T Consensus        34 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~-----~~~~~~~~d~~~   91 (240)
T TIGR02072        34 IPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS-----ENVQFICGDAEK   91 (240)
T ss_pred             CCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC-----CCCeEEecchhh
Confidence            457899999999999999998764  78999999999999887653     247788888764

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.

>COG3897 Predicted methyltransferase [General function prediction only]

Probab=97.40  E-value=0.0001  Score=68.59  Aligned_cols=58  Identities=33%  Similarity=0.412  Sum_probs=51.7

Q ss_pred             CCCCeEEEecCCcchhHHHHhhcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccH
Q 046527           94 RPGETICDMFAGIGPFAIPAAQKGC-IVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDA  153 (380)
Q Consensus        94 ~~g~~VLDlfcGvG~fsl~aA~~g~-~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da  153 (380)
                      -.|++|||+|+|+|.-++.+++.|+ .|++.|+.|.+...++.|++.|++.  +.+...|.
T Consensus        78 VrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~angv~--i~~~~~d~  136 (218)
T COG3897          78 VRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANGVS--ILFTHADL  136 (218)
T ss_pred             cccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhccce--eEEeeccc
Confidence            3689999999999999999999987 8999999999999999999999975  56666554

>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins

Probab=97.38  E-value=0.0025  Score=62.42  Aligned_cols=71  Identities=32%  Similarity=0.286  Sum_probs=61.3

Q ss_pred             HhccCCCCeEEEecCCcchhHHHHhhcC---CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHHHHHHh
Q 046527           90 ISQFRPGETICDMFAGIGPFAIPAAQKG---CIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFIRQLM  161 (380)
Q Consensus        90 i~~i~~g~~VLDlfcGvG~fsl~aA~~g---~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~l~~l~  161 (380)
                      +....+|+.|||+||+-|.=+.++|..-   ..|+|+|+++.-+..++.|++..|+.+ +.+.+.|+........
T Consensus        80 ~L~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~-v~~~~~D~~~~~~~~~  153 (283)
T PF01189_consen   80 ALDPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFN-VIVINADARKLDPKKP  153 (283)
T ss_dssp             HHTTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SS-EEEEESHHHHHHHHHH
T ss_pred             cccccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCce-EEEEeecccccccccc
Confidence            3467889999999999999999988752   499999999999999999999999987 8888899998876554

In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....

>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2

Probab=97.34  E-value=0.0062  Score=58.50  Aligned_cols=67  Identities=16%  Similarity=0.130  Sum_probs=54.8

Q ss_pred             CCCCeEEEecCCcchhHHHHhhcC--CEEEEEeCCHHHHHHHHHHHHHcCC---CCcEEEEeccHHHHHHHH
Q 046527           94 RPGETICDMFAGIGPFAIPAAQKG--CIVFANDLNPDSVHYLKINAKVNKV---DNYVRAYNMDAREFIRQL  160 (380)
Q Consensus        94 ~~g~~VLDlfcGvG~fsl~aA~~g--~~V~avDlnp~Aie~a~~Na~lN~l---~~ri~~~~~Da~e~l~~l  160 (380)
                      ...++||-+|.|.|..+-.+.+..  .+|++||++|..++.+++-......   +.|++++.+|++.++++.
T Consensus        75 ~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~  146 (246)
T PF01564_consen   75 PNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKET  146 (246)
T ss_dssp             SST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTS
T ss_pred             CCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhc
Confidence            467899999999999999998875  4999999999999999997665322   368999999999998653

5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....

>TIGR00438 rrmJ cell division protein FtsJ

Probab=97.32  E-value=0.00029  Score=64.19  Aligned_cols=55  Identities=27%  Similarity=0.354  Sum_probs=43.3

Q ss_pred             HHhccCCCCeEEEecCCcchhHHHHhhcC---CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHH
Q 046527           89 IISQFRPGETICDMFAGIGPFAIPAAQKG---CIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDARE  155 (380)
Q Consensus        89 ~i~~i~~g~~VLDlfcGvG~fsl~aA~~g---~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e  155 (380)
                      ....+.+|++|||+|||+|.++..++...   .+|+++|+++..           +..+ ++++++|+.+
T Consensus        26 ~~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----------~~~~-i~~~~~d~~~   83 (188)
T TIGR00438        26 KFKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----------PIEN-VDFIRGDFTD   83 (188)
T ss_pred             HhcccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----------cCCC-ceEEEeeCCC
Confidence            34556889999999999999999888763   379999999954           2233 7788888754

>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases

Probab=97.32  E-value=0.00037  Score=63.69  Aligned_cols=43  Identities=26%  Similarity=0.404  Sum_probs=36.6

Q ss_pred             cCCCCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHH
Q 046527           93 FRPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKI  135 (380)
Q Consensus        93 i~~g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~  135 (380)
                      -.+|+.|||.|||+|+.++++.+.|.+.+|+|+++..++.|++
T Consensus       189 t~~gdiVlDpF~GSGTT~~aa~~l~R~~ig~E~~~~y~~~a~~  231 (231)
T PF01555_consen  189 TNPGDIVLDPFAGSGTTAVAAEELGRRYIGIEIDEEYCEIAKK  231 (231)
T ss_dssp             S-TT-EEEETT-TTTHHHHHHHHTT-EEEEEESSHHHHHHHHH
T ss_pred             hccceeeehhhhccChHHHHHHHcCCeEEEEeCCHHHHHHhcC
Confidence            3679999999999999999999999999999999999999874

In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....

>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional

Probab=97.25  E-value=0.00059  Score=65.91  Aligned_cols=55  Identities=15%  Similarity=0.158  Sum_probs=44.4

Q ss_pred             CCCeEEEecCCcchhHHHHhhcC-----CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHH
Q 046527           95 PGETICDMFAGIGPFAIPAAQKG-----CIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDARE  155 (380)
Q Consensus        95 ~g~~VLDlfcGvG~fsl~aA~~g-----~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e  155 (380)
                      .+.+|||+|||+|.++..++...     ..|+|+|+|+.+++.|+++.     . .+.+..+|+.+
T Consensus        85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~-----~-~~~~~~~d~~~  144 (272)
T PRK11088         85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY-----P-QVTFCVASSHR  144 (272)
T ss_pred             CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC-----C-CCeEEEeeccc
Confidence            45789999999999999887642     37999999999999997652     2 36788888754

>PRK13256 thiopurine S-methyltransferase; Reviewed

Probab=97.17  E-value=0.00063  Score=64.76  Aligned_cols=63  Identities=14%  Similarity=0.104  Sum_probs=49.9

Q ss_pred             CCCCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHHHHHH-------cC----CCCcEEEEeccHHHH
Q 046527           94 RPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKV-------NK----VDNYVRAYNMDAREF  156 (380)
Q Consensus        94 ~~g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~l-------N~----l~~ri~~~~~Da~e~  156 (380)
                      .++.+||+.+||.|.-++.+|..|..|+|+|+++.|++.+.+....       +.    -...++++++|..++
T Consensus        42 ~~~~rvLvPgCGkg~D~~~LA~~G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l  115 (226)
T PRK13256         42 NDSSVCLIPMCGCSIDMLFFLSKGVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNL  115 (226)
T ss_pred             CCCCeEEEeCCCChHHHHHHHhCCCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCC
Confidence            4578999999999999999999999999999999999998652100       00    013588888888764

>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins

Probab=97.16  E-value=0.00059  Score=63.62  Aligned_cols=58  Identities=17%  Similarity=0.177  Sum_probs=46.6

Q ss_pred             CCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHH
Q 046527           96 GETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREF  156 (380)
Q Consensus        96 g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~  156 (380)
                      -..+||+|||.|.|+..+|.++.+++++|+++.|++.|++...  +..+ |++.++|+.++
T Consensus        44 y~~alEvGCs~G~lT~~LA~rCd~LlavDis~~Al~~Ar~Rl~--~~~~-V~~~~~dvp~~  101 (201)
T PF05401_consen   44 YRRALEVGCSIGVLTERLAPRCDRLLAVDISPRALARARERLA--GLPH-VEWIQADVPEF  101 (201)
T ss_dssp             EEEEEEE--TTSHHHHHHGGGEEEEEEEES-HHHHHHHHHHTT--T-SS-EEEEES-TTT-
T ss_pred             cceeEecCCCccHHHHHHHHhhCceEEEeCCHHHHHHHHHhcC--CCCC-eEEEECcCCCC
Confidence            3689999999999999999998899999999999999998875  4554 99999999765

The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.

>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]

Probab=97.13  E-value=0.00081  Score=63.67  Aligned_cols=59  Identities=14%  Similarity=0.151  Sum_probs=49.6

Q ss_pred             CCCCeEEEecCCcchhHHHHhhc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHHHH
Q 046527           94 RPGETICDMFAGIGPFAIPAAQK--GCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFIR  158 (380)
Q Consensus        94 ~~g~~VLDlfcGvG~fsl~aA~~--g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~l~  158 (380)
                      ..-..|.|+|||.|.-+-.++++  ++.|+|+|.|+++++.|+.-     +.+ ++|..+|++.+-.
T Consensus        29 ~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~r-----lp~-~~f~~aDl~~w~p   89 (257)
T COG4106          29 ERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQR-----LPD-ATFEEADLRTWKP   89 (257)
T ss_pred             cccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHh-----CCC-CceecccHhhcCC
Confidence            34579999999999999999987  57999999999999998543     344 7899999987743

>PF13679 Methyltransf_32: Methyltransferase domain

Probab=97.11  E-value=0.0013  Score=57.52  Aligned_cols=62  Identities=18%  Similarity=0.141  Sum_probs=50.8

Q ss_pred             CCCCeEEEecCCcchhHHHHhh-----c-CCEEEEEeCCHHHHHHHHHHHHHcC--CCCcEEEEeccHHH
Q 046527           94 RPGETICDMFAGIGPFAIPAAQ-----K-GCIVFANDLNPDSVHYLKINAKVNK--VDNYVRAYNMDARE  155 (380)
Q Consensus        94 ~~g~~VLDlfcGvG~fsl~aA~-----~-g~~V~avDlnp~Aie~a~~Na~lN~--l~~ri~~~~~Da~e  155 (380)
                      .+...|+|+|||-|.++..++.     . +.+|+++|.++..++.+.+..+..+  +..++.+..++..+
T Consensus        24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~   93 (141)
T PF13679_consen   24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIAD   93 (141)
T ss_pred             CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhh
Confidence            5678999999999999999998     3 5699999999999999999988776  54456666655543

>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]

Probab=97.11  E-value=0.002  Score=62.36  Aligned_cols=65  Identities=23%  Similarity=0.208  Sum_probs=55.2

Q ss_pred             ccCCCCeEEEecCCcchhHHHHhhcC--------CEEEEEeCCHHHHHHHHHHHHHcCCCCc--EEEEeccHHHH
Q 046527           92 QFRPGETICDMFAGIGPFAIPAAQKG--------CIVFANDLNPDSVHYLKINAKVNKVDNY--VRAYNMDAREF  156 (380)
Q Consensus        92 ~i~~g~~VLDlfcGvG~fsl~aA~~g--------~~V~avDlnp~Aie~a~~Na~lN~l~~r--i~~~~~Da~e~  156 (380)
                      ...++..|||++||+|-++..+.+..        .+|+..|+||+++..+++-++.-++...  +.++++||++.
T Consensus        97 ~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~L  171 (296)
T KOG1540|consen   97 GPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDL  171 (296)
T ss_pred             CCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccC
Confidence            34567899999999999999888651        4899999999999999999987777654  89999999764

>smart00138 MeTrc Methyltransferase, chemotaxis proteins

Probab=97.10  E-value=0.0012  Score=63.82  Aligned_cols=43  Identities=14%  Similarity=0.180  Sum_probs=34.5

Q ss_pred             CCCeEEEecCCcch----hHHHHhhc-------CCEEEEEeCCHHHHHHHHHHH
Q 046527           95 PGETICDMFAGIGP----FAIPAAQK-------GCIVFANDLNPDSVHYLKINA  137 (380)
Q Consensus        95 ~g~~VLDlfcGvG~----fsl~aA~~-------g~~V~avDlnp~Aie~a~~Na  137 (380)
                      ++.+|||+|||+|-    +++.++..       +.+|+|+|+|+.+++.|++.+
T Consensus        99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~  152 (264)
T smart00138       99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGI  152 (264)
T ss_pred             CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCC
Confidence            45699999999995    55555543       248999999999999999864

Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.

>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes

Probab=97.07  E-value=0.00063  Score=64.29  Aligned_cols=64  Identities=23%  Similarity=0.213  Sum_probs=49.2

Q ss_pred             cCCCCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHH-HHHHcC---C-------CCcEEEEeccHHHH
Q 046527           93 FRPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKI-NAKVNK---V-------DNYVRAYNMDAREF  156 (380)
Q Consensus        93 i~~g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~-Na~lN~---l-------~~ri~~~~~Da~e~  156 (380)
                      ..++.+||+.+||.|.-.+.+|..|..|+|+|+++.|++.+.+ |.....   +       .++|+++++|.+++
T Consensus        35 ~~~~~rvLvPgCG~g~D~~~La~~G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l  109 (218)
T PF05724_consen   35 LKPGGRVLVPGCGKGYDMLWLAEQGHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFEL  109 (218)
T ss_dssp             TSTSEEEEETTTTTSCHHHHHHHTTEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTG
T ss_pred             CCCCCeEEEeCCCChHHHHHHHHCCCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccC
Confidence            5677899999999999999999999999999999999999843 321111   0       13588999998874

Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.

>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]

Probab=97.06  E-value=0.0084  Score=58.56  Aligned_cols=64  Identities=13%  Similarity=0.185  Sum_probs=58.3

Q ss_pred             hccCCCCeEEEecCCcchhHHHHhhcC---CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHH
Q 046527           91 SQFRPGETICDMFAGIGPFAIPAAQKG---CIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAR  154 (380)
Q Consensus        91 ~~i~~g~~VLDlfcGvG~fsl~aA~~g---~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~  154 (380)
                      ..+.+|.+||+.|+|+|.++.++++.-   .+++..|....-++.|++-.+..++.+.+++...|+-
T Consensus       101 L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc  167 (314)
T KOG2915|consen  101 LEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVC  167 (314)
T ss_pred             hcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecc
Confidence            467899999999999999999999875   3999999999999999999999999988999987763

>PRK11524 putative methyltransferase; Provisional

Probab=97.05  E-value=0.0011  Score=64.72  Aligned_cols=51  Identities=24%  Similarity=0.267  Sum_probs=45.1

Q ss_pred             HHHhcc-CCCCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHHHHH
Q 046527           88 RIISQF-RPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAK  138 (380)
Q Consensus        88 r~i~~i-~~g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~  138 (380)
                      +++... .+|++|||.|||+|+-++.+.+.|.+.+|+|++++.++.|++-+.
T Consensus       200 rlI~~~S~~GD~VLDPF~GSGTT~~AA~~lgR~~IG~Ei~~~Y~~~a~~Rl~  251 (284)
T PRK11524        200 RIILASSNPGDIVLDPFAGSFTTGAVAKASGRKFIGIEINSEYIKMGLRRLD  251 (284)
T ss_pred             HHHHHhCCCCCEEEECCCCCcHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHH
Confidence            444433 589999999999999999999999999999999999999998874

>PHA01634 hypothetical protein

Probab=97.03  E-value=0.0015  Score=57.16  Aligned_cols=51  Identities=14%  Similarity=-0.020  Sum_probs=47.1

Q ss_pred             CCCeEEEecCCcchhHHHHhhcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCc
Q 046527           95 PGETICDMFAGIGPFAIPAAQKGC-IVFANDLNPDSVHYLKINAKVNKVDNY  145 (380)
Q Consensus        95 ~g~~VLDlfcGvG~fsl~aA~~g~-~V~avDlnp~Aie~a~~Na~lN~l~~r  145 (380)
                      .+++|+|+|+++|.-++..+.+|+ .|+++|.+|...+.+++|++.|.+-++
T Consensus        28 k~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een~k~nnI~DK   79 (156)
T PHA01634         28 YQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEVCAYFNICDK   79 (156)
T ss_pred             cCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHHhhhheeeec
Confidence            588999999999999999999988 899999999999999999999976553

>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.00  E-value=0.0055  Score=58.39  Aligned_cols=71  Identities=17%  Similarity=0.097  Sum_probs=63.1

Q ss_pred             ccCCCCeEEEecCCcchhHHHHhhc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHHHHHHhc
Q 046527           92 QFRPGETICDMFAGIGPFAIPAAQK---GCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFIRQLMT  162 (380)
Q Consensus        92 ~i~~g~~VLDlfcGvG~fsl~aA~~---g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~l~~l~~  162 (380)
                      ++-..++++|+|..+|.=++..|..   +.+|+++|+|+++++++.+=.+..|+..+|+++.+++.+.|.++.+
T Consensus        70 ~~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~  143 (237)
T KOG1663|consen   70 RLLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLA  143 (237)
T ss_pred             HHhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHh
Confidence            3445789999999999888877754   5699999999999999999999999999999999999999999875

>PRK13699 putative methylase; Provisional

Probab=96.93  E-value=0.0019  Score=61.41  Aligned_cols=47  Identities=21%  Similarity=0.206  Sum_probs=42.4

Q ss_pred             cCCCCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHHHHHH
Q 046527           93 FRPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKV  139 (380)
Q Consensus        93 i~~g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~l  139 (380)
                      -.+|+.|||.|||+|..++.+.+.|.+.+|+|++++.++.+.+.++.
T Consensus       161 s~~g~~vlDpf~Gsgtt~~aa~~~~r~~~g~e~~~~y~~~~~~r~~~  207 (227)
T PRK13699        161 THPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLEQYHRAGQQRLAA  207 (227)
T ss_pred             CCCCCEEEeCCCCCCHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHH
Confidence            35899999999999999999999999999999999999998877643

>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=96.92  E-value=9.7e-05  Score=59.78  Aligned_cols=45  Identities=16%  Similarity=0.138  Sum_probs=36.6

Q ss_pred             EEecCCcchhHHHHhhc--CCEEEEEeCCHHHHHHHHHHHHHcCCCC
Q 046527          100 CDMFAGIGPFAIPAAQK--GCIVFANDLNPDSVHYLKINAKVNKVDN  144 (380)
Q Consensus       100 LDlfcGvG~fsl~aA~~--g~~V~avDlnp~Aie~a~~Na~lN~l~~  144 (380)
                      ||+|||+|.++..++..  ..+++++|+|+.+++.+++........+
T Consensus         1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~   47 (99)
T PF08242_consen    1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDN   47 (99)
T ss_dssp             -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---
T ss_pred             CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcc
Confidence            79999999999999988  5699999999999998888888776543

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.

>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]

Probab=96.91  E-value=0.0035  Score=63.36  Aligned_cols=84  Identities=27%  Similarity=0.310  Sum_probs=68.1

Q ss_pred             eeecChHHHHHHHHHhccCCCCeEEEecCCcchhHHHHhhcC----CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEec
Q 046527           76 VYWNSRLEHEHLRIISQFRPGETICDMFAGIGPFAIPAAQKG----CIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNM  151 (380)
Q Consensus        76 ff~n~rl~tE~~r~i~~i~~g~~VLDlfcGvG~fsl~aA~~g----~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~  151 (380)
                      .|+.+-.+......+....+|++|||+||+-|+=+.++|...    ..|+|+|.++.=++.+++|++..|+.+ +.+++.
T Consensus       137 ~~~vQd~sS~l~a~~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~n-v~~~~~  215 (355)
T COG0144         137 LIYVQDEASQLPALVLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRN-VIVVNK  215 (355)
T ss_pred             EEEEcCHHHHHHHHHcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCc-eEEEec
Confidence            444444444444445677899999999999999999999763    468999999999999999999999998 889999


Q ss_pred             cHHHHHHHH
Q 046527          152 DAREFIRQL  160 (380)
Q Consensus       152 Da~e~l~~l  160 (380)
                      |++.+....
T Consensus       216 d~~~~~~~~  224 (355)
T COG0144         216 DARRLAELL  224 (355)
T ss_pred             ccccccccc
Confidence            988765544

>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=96.77  E-value=0.003  Score=59.76  Aligned_cols=70  Identities=14%  Similarity=0.165  Sum_probs=62.6

Q ss_pred             HHHhccCCCCeEEEecCCcchhHHHHhhcCC--EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHHH
Q 046527           88 RIISQFRPGETICDMFAGIGPFAIPAAQKGC--IVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFI  157 (380)
Q Consensus        88 r~i~~i~~g~~VLDlfcGvG~fsl~aA~~g~--~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~l  157 (380)
                      .++..+..+..++|+||--|.+++.+.+.+.  .+++.|+++..++.|.+|+..|++.+++++..+|....+
T Consensus         9 ~va~~V~~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l   80 (226)
T COG2384           9 TVANLVKQGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVL   80 (226)
T ss_pred             HHHHHHHcCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCcccc
Confidence            3445677888899999999999999998864  899999999999999999999999999999999996554

>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]

Probab=96.71  E-value=0.0024  Score=65.78  Aligned_cols=54  Identities=19%  Similarity=0.209  Sum_probs=50.6

Q ss_pred             eEEEecCCcchhHHHHhhcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEec
Q 046527           98 TICDMFAGIGPFAIPAAQKGC-IVFANDLNPDSVHYLKINAKVNKVDNYVRAYNM  151 (380)
Q Consensus        98 ~VLDlfcGvG~fsl~aA~~g~-~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~  151 (380)
                      .|||+|+|+|.+++.+++.|+ .|+|+|.-..+.++|++-...||++++|.+++.
T Consensus        69 ~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~kng~SdkI~vInk  123 (636)
T KOG1501|consen   69 FVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHKNGMSDKINVINK  123 (636)
T ss_pred             EEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHhcCCCccceeeecc
Confidence            589999999999999999988 999999999999999999999999988888764

>TIGR00006 S-adenosyl-methyltransferase MraW

Probab=96.69  E-value=0.012  Score=58.46  Aligned_cols=77  Identities=16%  Similarity=0.196  Sum_probs=61.6

Q ss_pred             HHHHHHHHHhccCCCCeEEEecCCcchhHHHHhhcC--CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHHHHH
Q 046527           82 LEHEHLRIISQFRPGETICDMFAGIGPFAIPAAQKG--CIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFIRQ  159 (380)
Q Consensus        82 l~tE~~r~i~~i~~g~~VLDlfcGvG~fsl~aA~~g--~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~l~~  159 (380)
                      +-.|.+..+ ...+|.+++|.-+|-|.-+..+++..  ++|+|+|.+|.|++.+++.++.  ..+++++++++-.++...
T Consensus         8 ll~Evl~~L-~~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~--~~~R~~~i~~nF~~l~~~   84 (305)
T TIGR00006         8 LLDEVVEGL-NIKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSD--FEGRVVLIHDNFANFFEH   84 (305)
T ss_pred             hHHHHHHhc-CcCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhh--cCCcEEEEeCCHHHHHHH
Confidence            333444433 35678899999999999999999762  6999999999999999998764  356799999999888766


Q ss_pred             Hh
Q 046527          160 LM  161 (380)
Q Consensus       160 l~  161 (380)
                      +.
T Consensus        85 l~   86 (305)
T TIGR00006        85 LD   86 (305)
T ss_pred             HH
Confidence            64

Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.

>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes

Probab=96.61  E-value=0.0062  Score=60.29  Aligned_cols=56  Identities=18%  Similarity=0.229  Sum_probs=41.0

Q ss_pred             CCeEEEecCCcchh-HHHHhh-cCCEEEEEeCCHHHHHHHHHHHHHc-CCCCcEEEEec
Q 046527           96 GETICDMFAGIGPF-AIPAAQ-KGCIVFANDLNPDSVHYLKINAKVN-KVDNYVRAYNM  151 (380)
Q Consensus        96 g~~VLDlfcGvG~f-sl~aA~-~g~~V~avDlnp~Aie~a~~Na~lN-~l~~ri~~~~~  151 (380)
                      .-++||+|+|.-.+ .+..++ .+.+++|.|+++.+++.|++|++.| +++++|+++..
T Consensus       103 ~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~  161 (299)
T PF05971_consen  103 KVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNLESRIELRKQ  161 (299)
T ss_dssp             --EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE-
T ss_pred             ceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccccccceEEEEc
Confidence            35799999987644 554444 3779999999999999999999999 99999998765

The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=96.59  E-value=0.0014  Score=62.65  Aligned_cols=58  Identities=12%  Similarity=0.092  Sum_probs=46.2

Q ss_pred             CCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHHHHH
Q 046527           96 GETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFIRQ  159 (380)
Q Consensus        96 g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~l~~  159 (380)
                      -+++||+|||+|.++..+-....+.+|+|+|..+++.|.+.    ++-+  +..++|+..|++.
T Consensus       126 F~~~lDLGCGTGL~G~~lR~~a~~ltGvDiS~nMl~kA~eK----g~YD--~L~~Aea~~Fl~~  183 (287)
T COG4976         126 FRRMLDLGCGTGLTGEALRDMADRLTGVDISENMLAKAHEK----GLYD--TLYVAEAVLFLED  183 (287)
T ss_pred             cceeeecccCcCcccHhHHHHHhhccCCchhHHHHHHHHhc----cchH--HHHHHHHHHHhhh
Confidence            47999999999999999988888999999999999988754    3333  3556666666543

>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G

Probab=96.45  E-value=0.019  Score=53.02  Aligned_cols=64  Identities=23%  Similarity=0.138  Sum_probs=52.9

Q ss_pred             hccCCCC-eEEEecCCcchhHHHHhhcC--CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHH
Q 046527           91 SQFRPGE-TICDMFAGIGPFAIPAAQKG--CIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDARE  155 (380)
Q Consensus        91 ~~i~~g~-~VLDlfcGvG~fsl~aA~~g--~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e  155 (380)
                      ..+.... +++|+|+|.|.-|+++|-..  .+|+.+|.+..=+..++.-+...+++| ++++++++++
T Consensus        43 ~~~~~~~~~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~n-v~v~~~R~E~  109 (184)
T PF02527_consen   43 PFLPDFGKKVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSN-VEVINGRAEE  109 (184)
T ss_dssp             GCS-CCCSEEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SS-EEEEES-HHH
T ss_pred             hhhccCCceEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCC-EEEEEeeecc
Confidence            3344444 89999999999999988653  489999999999999999999999997 9999999998

Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.

>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2

Probab=96.44  E-value=0.0057  Score=59.16  Aligned_cols=53  Identities=30%  Similarity=0.509  Sum_probs=45.7

Q ss_pred             eEEEecCCcchhHHHHhhcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHHHH
Q 046527           98 TICDMFAGIGPFAIPAAQKGC-IVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFIR  158 (380)
Q Consensus        98 ~VLDlfcGvG~fsl~aA~~g~-~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~l~  158 (380)
                      +|+|||||.|.+++-+-..|. -|.|+|+++.|++..+.|..        ....+|+.++-.
T Consensus         2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~a~~~y~~N~~--------~~~~~Di~~~~~   55 (335)
T PF00145_consen    2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPDACETYKANFP--------EVICGDITEIDP   55 (335)
T ss_dssp             EEEEET-TTTHHHHHHHHTTEEEEEEEESSHHHHHHHHHHHT--------EEEESHGGGCHH
T ss_pred             cEEEEccCccHHHHHHHhcCcEEEEEeecCHHHHHhhhhccc--------cccccccccccc
Confidence            689999999999999998886 79999999999999999974        578889877654

1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....

>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=96.37  E-value=0.017  Score=57.27  Aligned_cols=50  Identities=16%  Similarity=0.148  Sum_probs=39.8

Q ss_pred             CCCCeEEEecCCcchhHHHHhhcCC-EEEEEeCCHHHHHHHHHHHHHcCCC
Q 046527           94 RPGETICDMFAGIGPFAIPAAQKGC-IVFANDLNPDSVHYLKINAKVNKVD  143 (380)
Q Consensus        94 ~~g~~VLDlfcGvG~fsl~aA~~g~-~V~avDlnp~Aie~a~~Na~lN~l~  143 (380)
                      -.|++|||+|||.|.++..++..|+ .|+|+|-++..+-..+--...-|.+
T Consensus       114 L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~~  164 (315)
T PF08003_consen  114 LKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQD  164 (315)
T ss_pred             cCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCCC
Confidence            4689999999999999999999987 7999999998776644433333333

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification

>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes

Probab=96.36  E-value=0.011  Score=56.11  Aligned_cols=63  Identities=21%  Similarity=0.231  Sum_probs=43.0

Q ss_pred             cChHHHHHH-HHHhcc-C-CCCeEEEecCCcchhHHHHhhc--C--CEEEEEeCCHHHHHHHHHHHHHcC
Q 046527           79 NSRLEHEHL-RIISQF-R-PGETICDMFAGIGPFAIPAAQK--G--CIVFANDLNPDSVHYLKINAKVNK  141 (380)
Q Consensus        79 n~rl~tE~~-r~i~~i-~-~g~~VLDlfcGvG~fsl~aA~~--g--~~V~avDlnp~Aie~a~~Na~lN~  141 (380)
                      .-|+..|.. |.+... . ..-++||.|||.|.+--.++-.  .  ..|+|-|+|++++++|++|+.+..
T Consensus        32 PVRLAsEi~qR~l~~l~~~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt  101 (246)
T PF11599_consen   32 PVRLASEIFQRALHYLEGKGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLT  101 (246)
T ss_dssp             -HHHHHHHHHHHHCTSSS-S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCS
T ss_pred             cHHHHHHHHHHHHHhhcCCCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhcc
Confidence            457777765 333322 2 2348999999999986655532  2  289999999999999999998753

This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.

>KOG2899 consensus Predicted methyltransferase [General function prediction only]

Probab=96.31  E-value=0.0052  Score=59.15  Aligned_cols=55  Identities=13%  Similarity=0.279  Sum_probs=45.1

Q ss_pred             HHHHHH-hccCCCCeEEEecCCcchhHHHHhhc-CC-EEEEEeCCHHHHHHHHHHHHH
Q 046527           85 EHLRII-SQFRPGETICDMFAGIGPFAIPAAQK-GC-IVFANDLNPDSVHYLKINAKV  139 (380)
Q Consensus        85 E~~r~i-~~i~~g~~VLDlfcGvG~fsl~aA~~-g~-~V~avDlnp~Aie~a~~Na~l  139 (380)
                      .+++.+ .....+..+||+||..|.+++.+|+. |+ .|+|+|+++..++.|++|++.
T Consensus        47 ~rLk~L~~~~f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~  104 (288)
T KOG2899|consen   47 PRLKVLEKDWFEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRF  104 (288)
T ss_pred             hhhhhccccccCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccc
Confidence            344444 23456789999999999999999987 44 899999999999999999753

>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]

Probab=96.27  E-value=0.0066  Score=57.77  Aligned_cols=56  Identities=16%  Similarity=0.128  Sum_probs=44.8

Q ss_pred             CCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHHH
Q 046527           96 GETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFI  157 (380)
Q Consensus        96 g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~l  157 (380)
                      ..-|||+|||+|.-+-.+...|...+|+|+||.+++.|.+ -..   +.  .++.+|.-+.+
T Consensus        51 ~~~iLDIGCGsGLSg~vL~~~Gh~wiGvDiSpsML~~a~~-~e~---eg--dlil~DMG~Gl  106 (270)
T KOG1541|consen   51 SGLILDIGCGSGLSGSVLSDSGHQWIGVDISPSMLEQAVE-REL---EG--DLILCDMGEGL  106 (270)
T ss_pred             CcEEEEeccCCCcchheeccCCceEEeecCCHHHHHHHHH-hhh---hc--CeeeeecCCCC
Confidence            5689999999999999998889999999999999999997 222   22  35666765443

>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=96.25  E-value=0.0063  Score=63.52  Aligned_cols=65  Identities=25%  Similarity=0.353  Sum_probs=57.7

Q ss_pred             CCCCeEEEecCCcchhHHHHhhc--C-CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHHHH
Q 046527           94 RPGETICDMFAGIGPFAIPAAQK--G-CIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFIR  158 (380)
Q Consensus        94 ~~g~~VLDlfcGvG~fsl~aA~~--g-~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~l~  158 (380)
                      .++-+|||..|++|.-+|..|+.  | .+|+++|.++.+++..++|++.|++++.++...+|+...+-
T Consensus       108 ~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~  175 (525)
T KOG1253|consen  108 EKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMY  175 (525)
T ss_pred             cCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHH
Confidence            34568999999999999999975  2 38999999999999999999999999999999999987653

>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]

Probab=96.10  E-value=0.038  Score=54.37  Aligned_cols=64  Identities=14%  Similarity=0.094  Sum_probs=55.2

Q ss_pred             CeEEEecCCcchhHHHHhhcC--CEEEEEeCCHHHHHHHHHHHHHcC--C-CCcEEEEeccHHHHHHHH
Q 046527           97 ETICDMFAGIGPFAIPAAQKG--CIVFANDLNPDSVHYLKINAKVNK--V-DNYVRAYNMDAREFIRQL  160 (380)
Q Consensus        97 ~~VLDlfcGvG~fsl~aA~~g--~~V~avDlnp~Aie~a~~Na~lN~--l-~~ri~~~~~Da~e~l~~l  160 (380)
                      ++||-+|.|.|..+-.+++..  .+++.||++|..++++++=...-.  . +.|++++.+|+.++++..
T Consensus        78 k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~  146 (282)
T COG0421          78 KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDC  146 (282)
T ss_pred             CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhC
Confidence            599999999999999999987  499999999999999998764432  2 478999999999998654

>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]

Probab=96.10  E-value=0.023  Score=53.75  Aligned_cols=61  Identities=23%  Similarity=0.191  Sum_probs=54.9

Q ss_pred             CCeEEEecCCcchhHHHHhhc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHHH
Q 046527           96 GETICDMFAGIGPFAIPAAQK--GCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFI  157 (380)
Q Consensus        96 g~~VLDlfcGvG~fsl~aA~~--g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~l  157 (380)
                      +.+++|+|+|.|.-|+++|-.  ..+|+-+|.+..=+..++.-....+++| ++++++.++++-
T Consensus        68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~n-v~i~~~RaE~~~  130 (215)
T COG0357          68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLEN-VEIVHGRAEEFG  130 (215)
T ss_pred             CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCCC-eEEehhhHhhcc
Confidence            689999999999999998843  3479999999999999999999999998 999999998875

>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology

Probab=96.04  E-value=0.011  Score=57.61  Aligned_cols=53  Identities=28%  Similarity=0.451  Sum_probs=43.7

Q ss_pred             eEEEecCCcchhHHHHhhcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHHH
Q 046527           98 TICDMFAGIGPFAIPAAQKGC-IVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFI  157 (380)
Q Consensus        98 ~VLDlfcGvG~fsl~aA~~g~-~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~l  157 (380)
                      +|+|+|||.|.+++-+...|. .|+++|+++.+++..+.|..     +  .++++|+.++.
T Consensus         2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~N~~-----~--~~~~~Di~~~~   55 (275)
T cd00315           2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFP-----N--KLIEGDITKID   55 (275)
T ss_pred             cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHHhCC-----C--CCccCccccCc
Confidence            589999999999998888877 68999999999999998863     2  15677877654

Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.

>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []

Probab=95.95  E-value=0.016  Score=54.30  Aligned_cols=63  Identities=17%  Similarity=0.244  Sum_probs=42.2

Q ss_pred             ccCCCCeEEEecCCcchhHHHHhhc-CC-EEEEEeCCHHHHHHHHHHHHH-------cCCC-CcEEEEeccHH
Q 046527           92 QFRPGETICDMFAGIGPFAIPAAQK-GC-IVFANDLNPDSVHYLKINAKV-------NKVD-NYVRAYNMDAR  154 (380)
Q Consensus        92 ~i~~g~~VLDlfcGvG~fsl~aA~~-g~-~V~avDlnp~Aie~a~~Na~l-------N~l~-~ri~~~~~Da~  154 (380)
                      .+.++++.+|+|||+|-..+.+|.. ++ +++|||+.+...+.|+.+.+.       .+.. ..+++.++|..
T Consensus        39 ~l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl  111 (205)
T PF08123_consen   39 NLTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFL  111 (205)
T ss_dssp             T--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TT
T ss_pred             CCCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCcc
Confidence            4678999999999999999987754 55 699999999999988875543       3332 35778888864

H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....

>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]

Probab=95.77  E-value=0.093  Score=53.45  Aligned_cols=70  Identities=19%  Similarity=0.157  Sum_probs=57.1

Q ss_pred             hccCCCCeEEEecCCcchhHHHHhhcC--CEEEEEeCCHHHHHHHHHHHHH---cC--CC-CcEEEEeccHHHHHHHH
Q 046527           91 SQFRPGETICDMFAGIGPFAIPAAQKG--CIVFANDLNPDSVHYLKINAKV---NK--VD-NYVRAYNMDAREFIRQL  160 (380)
Q Consensus        91 ~~i~~g~~VLDlfcGvG~fsl~aA~~g--~~V~avDlnp~Aie~a~~Na~l---N~--l~-~ri~~~~~Da~e~l~~l  160 (380)
                      ..++.-+.||-+|.|-|.-.-.+.+.-  .+|+-||++|.+++.+++|..+   |+  ++ .|+++++.|+..+++..
T Consensus       285 s~~~~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a  362 (508)
T COG4262         285 SSVRGARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTA  362 (508)
T ss_pred             ccccccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhh
Confidence            344566899999999999998998875  3999999999999999977543   32  33 58999999999998654

>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional

Probab=95.69  E-value=0.015  Score=58.58  Aligned_cols=57  Identities=23%  Similarity=0.265  Sum_probs=44.2

Q ss_pred             cCCCCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHHH
Q 046527           93 FRPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFI  157 (380)
Q Consensus        93 i~~g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~l  157 (380)
                      +.+|.++||+||+.|+|+-.++++|++|+|||..+-+     ..+..   ..+|+.+.+|...+.
T Consensus       209 ~~~g~~vlDLGAsPGGWT~~L~~rG~~V~AVD~g~l~-----~~L~~---~~~V~h~~~d~fr~~  265 (357)
T PRK11760        209 LAPGMRAVDLGAAPGGWTYQLVRRGMFVTAVDNGPMA-----QSLMD---TGQVEHLRADGFKFR  265 (357)
T ss_pred             cCCCCEEEEeCCCCcHHHHHHHHcCCEEEEEechhcC-----HhhhC---CCCEEEEeccCcccC
Confidence            4689999999999999999999999999999966522     22211   235888888876653

>KOG3010 consensus Methyltransferase [General function prediction only]

Probab=95.59  E-value=0.015  Score=55.83  Aligned_cols=53  Identities=21%  Similarity=0.170  Sum_probs=43.1

Q ss_pred             HHHHHHHhccCCCC-eEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHHH
Q 046527           84 HEHLRIISQFRPGE-TICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKIN  136 (380)
Q Consensus        84 tE~~r~i~~i~~g~-~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~N  136 (380)
                      ++....+..+.++. .+||+|||+|.-++.+|..-.+|+|+|+|+.+++.|++-
T Consensus        21 tdw~~~ia~~~~~h~~a~DvG~G~Gqa~~~iae~~k~VIatD~s~~mL~~a~k~   74 (261)
T KOG3010|consen   21 TDWFKKIASRTEGHRLAWDVGTGNGQAARGIAEHYKEVIATDVSEAMLKVAKKH   74 (261)
T ss_pred             HHHHHHHHhhCCCcceEEEeccCCCcchHHHHHhhhhheeecCCHHHHHHhhcC
Confidence            44555556666665 899999999977888888778999999999999988864

>KOG4058 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.53  E-value=0.02  Score=51.57  Aligned_cols=62  Identities=24%  Similarity=0.280  Sum_probs=54.8

Q ss_pred             CCCeEEEecCCcchhHHHHhhcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHH
Q 046527           95 PGETICDMFAGIGPFAIPAAQKGC-IVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREF  156 (380)
Q Consensus        95 ~g~~VLDlfcGvG~fsl~aA~~g~-~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~  156 (380)
                      +..+.+|+|+|-|-+.+.+++.|. ..+++|+||..+.+.+-.+-..++..+..|.+.|..++
T Consensus        72 ~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~  134 (199)
T KOG4058|consen   72 PKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKV  134 (199)
T ss_pred             CCCcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhc
Confidence            334799999999999999999985 89999999999999999999999988888888777654

>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=95.42  E-value=0.027  Score=53.03  Aligned_cols=54  Identities=28%  Similarity=0.252  Sum_probs=44.4

Q ss_pred             cCCCCeEEEecCCcchhHHHHhhc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHH
Q 046527           93 FRPGETICDMFAGIGPFAIPAAQK--GCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAR  154 (380)
Q Consensus        93 i~~g~~VLDlfcGvG~fsl~aA~~--g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~  154 (380)
                      +....+|+|+|+|.|.+++.+++.  +.+++..|+ |..++.+++       .+||+++.+|..
T Consensus        98 ~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~-------~~rv~~~~gd~f  153 (241)
T PF00891_consen   98 FSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE-------ADRVEFVPGDFF  153 (241)
T ss_dssp             TTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH-------TTTEEEEES-TT
T ss_pred             ccCccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc-------ccccccccccHH
Confidence            456679999999999999999987  359999999 999998888       668999999987

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....

>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]

Probab=95.23  E-value=0.083  Score=48.47  Aligned_cols=63  Identities=22%  Similarity=0.226  Sum_probs=51.4

Q ss_pred             ccCCCCeEEEecCCcchhHHHHhhcCC---EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHHHHHH
Q 046527           92 QFRPGETICDMFAGIGPFAIPAAQKGC---IVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFIRQL  160 (380)
Q Consensus        92 ~i~~g~~VLDlfcGvG~fsl~aA~~g~---~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~l~~l  160 (380)
                      ....|.-||++|.|+|.|+-.+.++|.   .++++|.|++.+..+.+-.     .+ +.+++||+.+.=..+
T Consensus        45 ~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~-----p~-~~ii~gda~~l~~~l  110 (194)
T COG3963          45 DPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLY-----PG-VNIINGDAFDLRTTL  110 (194)
T ss_pred             CcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhC-----CC-ccccccchhhHHHHH
Confidence            356688999999999999999999875   8999999999999876542     33 679999998764333

>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes

Probab=95.09  E-value=0.055  Score=54.36  Aligned_cols=60  Identities=18%  Similarity=0.140  Sum_probs=42.0

Q ss_pred             CCCeEEEecCCcchhHHHHhhcC-CEEEEEeCCHHHHHHHHHHHHH---------cCCCCcEEEEeccHH
Q 046527           95 PGETICDMFAGIGPFAIPAAQKG-CIVFANDLNPDSVHYLKINAKV---------NKVDNYVRAYNMDAR  154 (380)
Q Consensus        95 ~g~~VLDlfcGvG~fsl~aA~~g-~~V~avDlnp~Aie~a~~Na~l---------N~l~~ri~~~~~Da~  154 (380)
                      ++.+|||||||-|+-..=....+ ..++|+|++..+++.|++-.+.         .+..=...++.+|..
T Consensus        62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f  131 (331)
T PF03291_consen   62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCF  131 (331)
T ss_dssp             TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTC
T ss_pred             CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccc
Confidence            68899999999888666555544 4999999999999999998722         111113567888775

The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.

>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes

Probab=95.08  E-value=0.035  Score=50.02  Aligned_cols=47  Identities=32%  Similarity=0.333  Sum_probs=36.9

Q ss_pred             CCCeEEEecCCcchhHHHHhhcC---CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccH
Q 046527           95 PGETICDMFAGIGPFAIPAAQKG---CIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDA  153 (380)
Q Consensus        95 ~g~~VLDlfcGvG~fsl~aA~~g---~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da  153 (380)
                      ++.+|||+||+.|+|+-.++.++   .+|+|+|+.+.           ..+.+ +..+++|.
T Consensus        23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~-----------~~~~~-~~~i~~d~   72 (181)
T PF01728_consen   23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM-----------DPLQN-VSFIQGDI   72 (181)
T ss_dssp             TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST-----------GS-TT-EEBTTGGG
T ss_pred             cccEEEEcCCcccceeeeeeecccccceEEEEecccc-----------ccccc-eeeeeccc
Confidence            34899999999999999999998   59999999987           22233 66667776

RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....

>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria

Probab=94.98  E-value=0.078  Score=52.86  Aligned_cols=79  Identities=20%  Similarity=0.188  Sum_probs=55.9

Q ss_pred             ChHHHHHHHHHhccCCCCeEEEecCCcchhHHHHhhc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHHH
Q 046527           80 SRLEHEHLRIISQFRPGETICDMFAGIGPFAIPAAQK--GCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFI  157 (380)
Q Consensus        80 ~rl~tE~~r~i~~i~~g~~VLDlfcGvG~fsl~aA~~--g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~l  157 (380)
                      |-+..|.+..+. ..++.+++|.--|.|+-+..++..  .++|+|+|.+|+|++.+++++.  ...+++.+++++-.++-
T Consensus         6 PVll~Evl~~L~-~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~--~~~~r~~~~~~~F~~l~   82 (310)
T PF01795_consen    6 PVLLKEVLEALN-PKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLK--KFDDRFIFIHGNFSNLD   82 (310)
T ss_dssp             -TTHHHHHHHHT---TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTC--CCCTTEEEEES-GGGHH
T ss_pred             cccHHHHHHhhC-cCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHh--hccceEEEEeccHHHHH
Confidence            334445554443 567889999999999999999976  4699999999999999988765  33678999999877776


Q ss_pred             HHHh
Q 046527          158 RQLM  161 (380)
Q Consensus       158 ~~l~  161 (380)
                      ..+.
T Consensus        83 ~~l~   86 (310)
T PF01795_consen   83 EYLK   86 (310)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6554

The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.

>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=94.67  E-value=0.1  Score=50.17  Aligned_cols=57  Identities=21%  Similarity=0.265  Sum_probs=44.2

Q ss_pred             eeecChHHHHHHHHHhc---cCCCCeEEEecCCcchhHHHHhhcCC-EEEEEeCCHHHHHH
Q 046527           76 VYWNSRLEHEHLRIISQ---FRPGETICDMFAGIGPFAIPAAQKGC-IVFANDLNPDSVHY  132 (380)
Q Consensus        76 ff~n~rl~tE~~r~i~~---i~~g~~VLDlfcGvG~fsl~aA~~g~-~V~avDlnp~Aie~  132 (380)
                      -.|.+|-.......+..   ..+|.++||+|+-+|.|+-.+.++|+ .|+|+|..-.-+.|
T Consensus        57 ~~yVSRG~~KL~~ale~F~l~~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~  117 (245)
T COG1189          57 QPYVSRGGLKLEKALEEFELDVKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHW  117 (245)
T ss_pred             cCccccHHHHHHHHHHhcCcCCCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCH
Confidence            34567755554444433   35799999999999999999999987 99999988766655

>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]

Probab=94.64  E-value=0.048  Score=54.39  Aligned_cols=57  Identities=32%  Similarity=0.454  Sum_probs=47.2

Q ss_pred             CeEEEecCCcchhHHHHhhcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHHHHH
Q 046527           97 ETICDMFAGIGPFAIPAAQKGC-IVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFIRQ  159 (380)
Q Consensus        97 ~~VLDlfcGvG~fsl~aA~~g~-~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~l~~  159 (380)
                      -+++|||||.|++.+-+...|. -+.++|++|.+++..+.|...      -.++..|+.++..+
T Consensus         4 ~~~idLFsG~GG~~lGf~~agf~~~~a~Eid~~a~~ty~~n~~~------~~~~~~di~~~~~~   61 (328)
T COG0270           4 MKVIDLFAGIGGLSLGFEEAGFEIVFANEIDPPAVATYKANFPH------GDIILGDIKELDGE   61 (328)
T ss_pred             ceEEeeccCCchHHHHHHhcCCeEEEEEecCHHHHHHHHHhCCC------CceeechHhhcChh
Confidence            4799999999999998888886 789999999999999988643      35677888776543

>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length

Probab=94.60  E-value=0.2  Score=49.69  Aligned_cols=61  Identities=21%  Similarity=0.201  Sum_probs=54.3

Q ss_pred             CCeEEEecCCcchhHHHHhhcC----CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHH
Q 046527           96 GETICDMFAGIGPFAIPAAQKG----CIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREF  156 (380)
Q Consensus        96 g~~VLDlfcGvG~fsl~aA~~g----~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~  156 (380)
                      .-+|+|+.||.|-.-+-+....    ..|..+|.+|..++..++-++.+|+++.++|.++|+++.
T Consensus       136 pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~  200 (311)
T PF12147_consen  136 PVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDR  200 (311)
T ss_pred             ceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCH
Confidence            4589999999999988777652    389999999999999999999999999679999999875

It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.

>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]

Probab=94.53  E-value=0.081  Score=55.84  Aligned_cols=77  Identities=17%  Similarity=0.266  Sum_probs=57.4

Q ss_pred             eeecChHHHHHHHHHhccCCCCeEEEecCCcchhHHHHhhcC------CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEE
Q 046527           76 VYWNSRLEHEHLRIISQFRPGETICDMFAGIGPFAIPAAQKG------CIVFANDLNPDSVHYLKINAKVNKVDNYVRAY  149 (380)
Q Consensus        76 ff~n~rl~tE~~r~i~~i~~g~~VLDlfcGvG~fsl~aA~~g------~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~  149 (380)
                      =|+.|+...+.+..+....+..+|+|..||+|.+-+.+++.-      ...+|.|+++..+..++.|+-++++...+...
T Consensus       167 EfyTP~~v~~liv~~l~~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i~  246 (489)
T COG0286         167 EFYTPREVSELIVELLDPEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDANIR  246 (489)
T ss_pred             ccCChHHHHHHHHHHcCCCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCcccccc
Confidence            355677555554333334677899999999999988877542      46999999999999999999999987323444


Q ss_pred             ecc
Q 046527          150 NMD  152 (380)
Q Consensus       150 ~~D  152 (380)
                      .+|
T Consensus       247 ~~d  249 (489)
T COG0286         247 HGD  249 (489)
T ss_pred             ccc
Confidence            444

>TIGR00675 dcm DNA-methyltransferase (dcm)

Probab=94.51  E-value=0.053  Score=53.84  Aligned_cols=52  Identities=27%  Similarity=0.365  Sum_probs=42.7

Q ss_pred             EEEecCCcchhHHHHhhcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHHH
Q 046527           99 ICDMFAGIGPFAIPAAQKGC-IVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFI  157 (380)
Q Consensus        99 VLDlfcGvG~fsl~aA~~g~-~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~l  157 (380)
                      |+|||||.|.+++-+-+.|. -|.++|+++.+++..+.|..     +  .++.+|+.++-
T Consensus         1 vidLF~G~GG~~~Gl~~aG~~~~~a~e~~~~a~~ty~~N~~-----~--~~~~~Di~~~~   53 (315)
T TIGR00675         1 FIDLFAGIGGIRLGFEQAGFKCVFASEIDKYAQKTYEANFG-----N--KVPFGDITKIS   53 (315)
T ss_pred             CEEEecCccHHHHHHHHcCCeEEEEEeCCHHHHHHHHHhCC-----C--CCCccChhhhh
Confidence            68999999999999988887 46789999999999998852     2  34668887764

All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PRK10458 DNA cytosine methylase; Provisional

Probab=94.50  E-value=0.072  Score=55.95  Aligned_cols=58  Identities=28%  Similarity=0.334  Sum_probs=44.5

Q ss_pred             CCeEEEecCCcchhHHHHhhcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHH
Q 046527           96 GETICDMFAGIGPFAIPAAQKGC-IVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREF  156 (380)
Q Consensus        96 g~~VLDlfcGvG~fsl~aA~~g~-~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~  156 (380)
                      .-+++|+|||+|++++-+-..|. -|.++|+++.|.+.-+.|..  ...+ ..++++|+.++
T Consensus        88 ~~~~iDLFsGiGGl~lGfe~aG~~~v~a~Eid~~A~~TY~~N~~--~~p~-~~~~~~DI~~i  146 (467)
T PRK10458         88 AFRFIDLFAGIGGIRRGFEAIGGQCVFTSEWNKHAVRTYKANWY--CDPA-THRFNEDIRDI  146 (467)
T ss_pred             CceEEEeCcCccHHHHHHHHcCCEEEEEEechHHHHHHHHHHcC--CCCc-cceeccChhhC
Confidence            34899999999999998887776 68999999999998888742  1111 34566777665

>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A

Probab=94.32  E-value=0.11  Score=50.29  Aligned_cols=57  Identities=23%  Similarity=0.404  Sum_probs=43.6

Q ss_pred             hccCCCCeEEEecCCcchhHHHHhhcC--CEEEEEeCCHHHHHHHHHHHHHcCCCCcEE
Q 046527           91 SQFRPGETICDMFAGIGPFAIPAAQKG--CIVFANDLNPDSVHYLKINAKVNKVDNYVR  147 (380)
Q Consensus        91 ~~i~~g~~VLDlfcGvG~fsl~aA~~g--~~V~avDlnp~Aie~a~~Na~lN~l~~ri~  147 (380)
                      ..+....+|+|++||.-|++++.....  ..++|+|++..+++.+..-+...++..++.
T Consensus       101 ~~~~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~~~~~~  159 (251)
T PF07091_consen  101 GRIPPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGVPHDAR  159 (251)
T ss_dssp             CCS---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-CEEEE
T ss_pred             hcCCCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCCCccee
Confidence            334557899999999999999888664  599999999999999999988888765443

>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised

Probab=94.30  E-value=0.064  Score=51.43  Aligned_cols=68  Identities=28%  Similarity=0.375  Sum_probs=47.4

Q ss_pred             hccCCCC--eEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHHHHHH---cC-C----CCcEEEEeccHHHHHH
Q 046527           91 SQFRPGE--TICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKV---NK-V----DNYVRAYNMDAREFIR  158 (380)
Q Consensus        91 ~~i~~g~--~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~l---N~-l----~~ri~~~~~Da~e~l~  158 (380)
                      ..+++|.  +|||.-+|-|.=++.+|..|++|+++|.||-....++.-++.   .. +    ..+++++++|..+++.
T Consensus        69 ~Glk~~~~~~VLDaTaGLG~Da~vlA~~G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~  146 (234)
T PF04445_consen   69 VGLKPGMRPSVLDATAGLGRDAFVLASLGCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLR  146 (234)
T ss_dssp             TT-BTTB---EEETT-TTSHHHHHHHHHT--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCC
T ss_pred             hCCCCCCCCEEEECCCcchHHHHHHHccCCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHh
Confidence            4456654  999999999999999998899999999999988877754432   21 1    1479999999999987

; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.

>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]

Probab=94.16  E-value=0.03  Score=56.40  Aligned_cols=41  Identities=29%  Similarity=0.609  Sum_probs=38.9

Q ss_pred             hccCCCCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHH
Q 046527           91 SQFRPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVH  131 (380)
Q Consensus        91 ~~i~~g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie  131 (380)
                      +.+++|+.|+|.|.|+|.|-+++|..|+.|+|-|++-..+.
T Consensus       204 Amv~pGdivyDPFVGTGslLvsaa~FGa~viGtDIDyr~vr  244 (421)
T KOG2671|consen  204 AMVKPGDIVYDPFVGTGSLLVSAAHFGAYVIGTDIDYRTVR  244 (421)
T ss_pred             hccCCCCEEecCccccCceeeehhhhcceeeccccchheee
Confidence            56889999999999999999999999999999999998887

>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=94.15  E-value=0.062  Score=50.87  Aligned_cols=65  Identities=23%  Similarity=0.260  Sum_probs=51.9

Q ss_pred             ccCCCCeEEEecCCcchhHHHHhhc-C---CEEEEEeCCHHHHHHHHHHHHHcC--------CC-CcEEEEeccHHHH
Q 046527           92 QFRPGETICDMFAGIGPFAIPAAQK-G---CIVFANDLNPDSVHYLKINAKVNK--------VD-NYVRAYNMDAREF  156 (380)
Q Consensus        92 ~i~~g~~VLDlfcGvG~fsl~aA~~-g---~~V~avDlnp~Aie~a~~Na~lN~--------l~-~ri~~~~~Da~e~  156 (380)
                      .+.+|...||+|+|+|.++..++.. |   ..++|||.-|+.++++++|+...-        ++ .++.++.+|.+..
T Consensus        79 ~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g  156 (237)
T KOG1661|consen   79 HLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKG  156 (237)
T ss_pred             hhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCcccc
Confidence            4789999999999999999988854 3   355999999999999999987542        21 3467778887654

>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family

Probab=93.93  E-value=0.4  Score=48.06  Aligned_cols=74  Identities=9%  Similarity=0.014  Sum_probs=55.6

Q ss_pred             HHHhccCCCCeEEEecCCcchhHHHHhh------cCCEEEEEeCCHHHHHHHHHHHHHcCCCC-cEEEEeccHHHHHHHH
Q 046527           88 RIISQFRPGETICDMFAGIGPFAIPAAQ------KGCIVFANDLNPDSVHYLKINAKVNKVDN-YVRAYNMDAREFIRQL  160 (380)
Q Consensus        88 r~i~~i~~g~~VLDlfcGvG~fsl~aA~------~g~~V~avDlnp~Aie~a~~Na~lN~l~~-ri~~~~~Da~e~l~~l  160 (380)
                      .++..+.++..++|+|||.|.=+-.+..      +...-+++|+|.++++.+..++..-.+.. .+..+++|..+.+..+
T Consensus        69 ~Ia~~i~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l  148 (319)
T TIGR03439        69 DIAASIPSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWL  148 (319)
T ss_pred             HHHHhcCCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhc
Confidence            4456778888999999999986444332      23478999999999999999998444443 3455899998887665


Q ss_pred             h
Q 046527          161 M  161 (380)
Q Consensus       161 ~  161 (380)
                      .
T Consensus       149 ~  149 (319)
T TIGR03439       149 K  149 (319)
T ss_pred             c
Confidence            4

This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).

>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes

Probab=93.86  E-value=0.068  Score=50.50  Aligned_cols=41  Identities=34%  Similarity=0.500  Sum_probs=31.5

Q ss_pred             CCCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHH
Q 046527           95 PGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKI  135 (380)
Q Consensus        95 ~g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~  135 (380)
                      +..+++|+|||+|..++.+...+.+|+.+|+++..+...+.
T Consensus        20 ~~~~~vepF~G~g~V~~~~~~~~~~vi~ND~~~~l~~~~~~   60 (260)
T PF02086_consen   20 KHKTYVEPFAGGGSVFLNLKQPGKRVIINDINPDLINFWKA   60 (260)
T ss_dssp             S-SEEEETT-TTSHHHHCC---SSEEEEEES-HHHHHHHHH
T ss_pred             CCCEEEEEecchhHHHHHhcccccceeeeechHHHHHHHHH
Confidence            57899999999999999887778899999999998887663

There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.

>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]

Probab=93.75  E-value=0.091  Score=54.20  Aligned_cols=66  Identities=36%  Similarity=0.401  Sum_probs=56.9

Q ss_pred             hccCCCCeEEEecCCcchhHHHHhhc--C-CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHHH
Q 046527           91 SQFRPGETICDMFAGIGPFAIPAAQK--G-CIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFI  157 (380)
Q Consensus        91 ~~i~~g~~VLDlfcGvG~fsl~aA~~--g-~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~l  157 (380)
                      ...++|++|||+||--|.=+.++|..  + ..|+|+|.|..-++.+..|+...|+.+ ..+.+.|.++|-
T Consensus       237 L~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~n-tiv~n~D~~ef~  305 (460)
T KOG1122|consen  237 LDPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTN-TIVSNYDGREFP  305 (460)
T ss_pred             cCCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCc-eEEEccCccccc
Confidence            45689999999999999988877754  2 389999999999999999999999998 567889998663

>KOG2361 consensus Predicted methyltransferase [General function prediction only]

Probab=93.61  E-value=0.059  Score=51.92  Aligned_cols=54  Identities=24%  Similarity=0.410  Sum_probs=43.4

Q ss_pred             eEEEecCCcchhHHHHhhcCC----EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccH
Q 046527           98 TICDMFAGIGPFAIPAAQKGC----IVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDA  153 (380)
Q Consensus        98 ~VLDlfcGvG~fsl~aA~~g~----~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da  153 (380)
                      ++|++|||+|....++.+-..    .|+|.|-+|.|++..+.|...+-  .++.....|.
T Consensus        74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e--~~~~afv~Dl  131 (264)
T KOG2361|consen   74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDE--SRVEAFVWDL  131 (264)
T ss_pred             hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccch--hhhcccceec
Confidence            799999999999999997633    89999999999999999986654  3344444443

>KOG4300 consensus Predicted methyltransferase [General function prediction only]

Probab=93.40  E-value=0.12  Score=48.95  Aligned_cols=58  Identities=16%  Similarity=-0.008  Sum_probs=47.0

Q ss_pred             eEEEecCCcchhHHHHh-hcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEE-EEeccHHHH
Q 046527           98 TICDMFAGIGPFAIPAA-QKGCIVFANDLNPDSVHYLKINAKVNKVDNYVR-AYNMDAREF  156 (380)
Q Consensus        98 ~VLDlfcGvG~fsl~aA-~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~-~~~~Da~e~  156 (380)
                      .||++|||+|+-=-..- +.+++|+++|.|+.+-+.|.+.++.++-.. ++ ++.+|++..
T Consensus        79 ~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~-~~~fvva~ge~l  138 (252)
T KOG4300|consen   79 DVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKPLQ-VERFVVADGENL  138 (252)
T ss_pred             ceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccCcc-eEEEEeechhcC
Confidence            47999999998544333 457899999999999999999999996655 55 888887654

>COG0863 DNA modification methylase [DNA replication, recombination, and repair]

Probab=92.92  E-value=0.22  Score=47.89  Aligned_cols=49  Identities=27%  Similarity=0.352  Sum_probs=44.1

Q ss_pred             ccCCCCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHc
Q 046527           92 QFRPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVN  140 (380)
Q Consensus        92 ~i~~g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~lN  140 (380)
                      .-.+|++|||.|+|+|..++.+.+.|...+++|++++-++.+.+-+...
T Consensus       219 ~s~~~diVlDpf~GsGtt~~aa~~~~r~~ig~e~~~~y~~~~~~r~~~~  267 (302)
T COG0863         219 YSFPGDIVLDPFAGSGTTGIAAKNLGRRFIGIEINPEYVEVALKRLQEG  267 (302)
T ss_pred             cCCCCCEEeecCCCCChHHHHHHHcCCceEEEecCHHHHHHHHHHHHhh
Confidence            4568999999999999999999999999999999999999998877644

>COG1743 Adenine-specific DNA methylase containing a Zn-ribbon [DNA replication, recombination, and repair]

Probab=91.56  E-value=0.12  Score=56.72  Aligned_cols=67  Identities=25%  Similarity=0.226  Sum_probs=51.6

Q ss_pred             hccCCCCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHHHHH
Q 046527           91 SQFRPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFIRQ  159 (380)
Q Consensus        91 ~~i~~g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~l~~  159 (380)
                      .....+..++|.|+|-|.+.+.+++.|+.|+++|+||-++-.++..+..-+--.  ....-|+..+...
T Consensus        86 ~~~~~~~~~lDPfAG~GSIPlEAlRLG~~v~AvelnPvAylfLKavlEyPkkfg--~~liedv~~~~~w  152 (875)
T COG1743          86 ETPFEGPKLLDPFAGGGSIPLEALRLGLEVVAVELNPVAYLFLKAVLEYPKKFG--PELIEDVERWGAW  152 (875)
T ss_pred             cCcccCCcccccccCCCccchHHHhcCceeEEEecccHHHHHHHHHHhcchhhh--HHHHHHHHHHHHH
Confidence            445567799999999999999999999999999999999999999876532111  1233466666544

>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function

Probab=91.36  E-value=0.36  Score=41.71  Aligned_cols=52  Identities=29%  Similarity=0.232  Sum_probs=34.4

Q ss_pred             EecCCcc--hhHHHHh--hc--CCEEEEEeCCHHHHHHHHHH--HHHcCCCCcEEEEecc
Q 046527          101 DMFAGIG--PFAIPAA--QK--GCIVFANDLNPDSVHYLKIN--AKVNKVDNYVRAYNMD  152 (380)
Q Consensus       101 DlfcGvG--~fsl~aA--~~--g~~V~avDlnp~Aie~a~~N--a~lN~l~~ri~~~~~D  152 (380)
                      |+||+.|  ...+..+  ..  +.+|+++|.+|..++.++.|  +.+|...+.++++...
T Consensus         1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~~~~~l~~~~~~~~~~~~~   60 (167)
T PF05050_consen    1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRNLNLALNDKDGEVEFHPYA   60 (167)
T ss_dssp             EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH--HHHTTTSTTGGEEEE-
T ss_pred             CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHHHHHHhcCCCceEEEEEee
Confidence            8999999  5555443  22  45999999999999999999  8888665446665543

; PDB: 2PY6_A.

>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D

Probab=91.01  E-value=0.23  Score=40.56  Aligned_cols=61  Identities=15%  Similarity=0.065  Sum_probs=23.2

Q ss_pred             EEecCCcchhHHHHhhc---C--CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHHHHHHh
Q 046527          100 CDMFAGIGPFAIPAAQK---G--CIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFIRQLM  161 (380)
Q Consensus       100 LDlfcGvG~fsl~aA~~---g--~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~l~~l~  161 (380)
                      |++|++.|..++.+++.   .  .+++++|..+. .+..+++++..++.++++++++|..+++..+.
T Consensus         1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~   66 (106)
T PF13578_consen    1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLP   66 (106)
T ss_dssp             --------------------------EEEESS-------------GGG-BTEEEEES-THHHHHHHH
T ss_pred             CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcCCCCeEEEEEcCcHHHHHHcC
Confidence            57888888888877653   2  27999999997 44555555556777789999999999988775

>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]

Probab=90.85  E-value=0.28  Score=49.29  Aligned_cols=64  Identities=14%  Similarity=0.052  Sum_probs=50.3

Q ss_pred             cCCCCeEEEecCCcchhHHHHhhcCC-EEEEEeCCHHHHHHHHHHHHHcC-CCC----cEEEEeccHHHH
Q 046527           93 FRPGETICDMFAGIGPFAIPAAQKGC-IVFANDLNPDSVHYLKINAKVNK-VDN----YVRAYNMDAREF  156 (380)
Q Consensus        93 i~~g~~VLDlfcGvG~fsl~aA~~g~-~V~avDlnp~Aie~a~~Na~lN~-l~~----ri~~~~~Da~e~  156 (380)
                      .++++.++|||||-|+=.+-.-+.|. ..+|+|+..-+++.|++-.+... ...    .+.++.+|....
T Consensus       115 ~~~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~  184 (389)
T KOG1975|consen  115 TKRGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKE  184 (389)
T ss_pred             hccccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchh
Confidence            36789999999999999888777765 89999999999999998665321 111    368999997543

>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes

Probab=90.83  E-value=0.85  Score=44.51  Aligned_cols=41  Identities=22%  Similarity=0.157  Sum_probs=36.3

Q ss_pred             CCCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHH
Q 046527           95 PGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKI  135 (380)
Q Consensus        95 ~g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~  135 (380)
                      ...++||+|||-|..+..++....+|++-|.|+.+...+++
T Consensus        94 ~~~~lLDlGAGdG~VT~~l~~~f~~v~aTE~S~~Mr~rL~~  134 (265)
T PF05219_consen   94 KDKSLLDLGAGDGEVTERLAPLFKEVYATEASPPMRWRLSK  134 (265)
T ss_pred             cCCceEEecCCCcHHHHHHHhhcceEEeecCCHHHHHHHHh
Confidence            45689999999999999999988899999999999776554

The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.

>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]

Probab=90.75  E-value=1.4  Score=42.13  Aligned_cols=61  Identities=23%  Similarity=0.241  Sum_probs=46.3

Q ss_pred             ccCCCCeEEEecCCcchhHHHHhhcC---CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHH
Q 046527           92 QFRPGETICDMFAGIGPFAIPAAQKG---CIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDARE  155 (380)
Q Consensus        92 ~i~~g~~VLDlfcGvG~fsl~aA~~g---~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e  155 (380)
                      .+++|.+||-||+.+|+..-+++-..   ..|+|||.+|.+.+.+-.=++.-   .+|-.+.+||+.
T Consensus        70 ~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R---~NIiPIl~DAr~  133 (229)
T PF01269_consen   70 PIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKR---PNIIPILEDARH  133 (229)
T ss_dssp             S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHS---TTEEEEES-TTS
T ss_pred             CCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccC---CceeeeeccCCC
Confidence            46789999999999999999998752   39999999999988887555432   248889899873

It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....

>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

Probab=90.68  E-value=0.82  Score=35.95  Aligned_cols=55  Identities=25%  Similarity=0.280  Sum_probs=36.7

Q ss_pred             EEEecCCcchhHHHHhhc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHH
Q 046527           99 ICDMFAGIGPFAIPAAQK---GCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDARE  155 (380)
Q Consensus        99 VLDlfcGvG~fsl~aA~~---g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e  155 (380)
                      ++|++||+|... .++..   +..++++|.++.++..++......+... +.+..+|...
T Consensus        52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  109 (257)
T COG0500          52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGL-VDFVVADALG  109 (257)
T ss_pred             eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCc-eEEEEecccc
Confidence            999999999966 33332   2489999999999998555443221111 4666666554

>KOG3115 consensus Methyltransferase-like protein [General function prediction only]

Probab=89.88  E-value=0.43  Score=45.21  Aligned_cols=65  Identities=15%  Similarity=0.276  Sum_probs=54.8

Q ss_pred             CCeEEEecCCcchhHHHHhhcCC--EEEEEeCCHHHHHHHHHHHHHcC-------CCCcEEEEeccHHHHHHHHh
Q 046527           96 GETICDMFAGIGPFAIPAAQKGC--IVFANDLNPDSVHYLKINAKVNK-------VDNYVRAYNMDAREFIRQLM  161 (380)
Q Consensus        96 g~~VLDlfcGvG~fsl~aA~~g~--~V~avDlnp~Aie~a~~Na~lN~-------l~~ri~~~~~Da~e~l~~l~  161 (380)
                      .-.+.|+|||-|.+.+.++-..-  -++|.|+.-...++.++-+....       +.| +.+.+..+..++.++-
T Consensus        61 kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~n-i~vlr~namk~lpn~f  134 (249)
T KOG3115|consen   61 KVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPN-ISVLRTNAMKFLPNFF  134 (249)
T ss_pred             cceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhcccccccccc-ceeeeccchhhccchh
Confidence            34689999999999999998764  79999999999999998887654       444 8899999999988764

>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]

Probab=88.64  E-value=0.4  Score=50.90  Aligned_cols=60  Identities=23%  Similarity=0.299  Sum_probs=49.0

Q ss_pred             CeEEEecCCcchhHHHHhhc------CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHHH
Q 046527           97 ETICDMFAGIGPFAIPAAQK------GCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFI  157 (380)
Q Consensus        97 ~~VLDlfcGvG~fsl~aA~~------g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~l  157 (380)
                      .+|+-+|+|-|+++-...+.      ..++++||.||.|+-.++. .+.-.++++|+++..|++++-
T Consensus       369 tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~-~n~~~W~~~Vtii~~DMR~w~  434 (649)
T KOG0822|consen  369 TVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQN-RNFECWDNRVTIISSDMRKWN  434 (649)
T ss_pred             EEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhh-hchhhhcCeeEEEeccccccC
Confidence            36789999999997655443      2389999999999998765 666678899999999998875

>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2

Probab=88.38  E-value=1.3  Score=43.60  Aligned_cols=61  Identities=13%  Similarity=0.140  Sum_probs=39.5

Q ss_pred             CeEEEecCCcchhHH-HHhhc---CCEEEEEeCCHHHHHHHHHHHH-HcCCCCcEEEEeccHHHHH
Q 046527           97 ETICDMFAGIGPFAI-PAAQK---GCIVFANDLNPDSVHYLKINAK-VNKVDNYVRAYNMDAREFI  157 (380)
Q Consensus        97 ~~VLDlfcGvG~fsl-~aA~~---g~~V~avDlnp~Aie~a~~Na~-lN~l~~ri~~~~~Da~e~l  157 (380)
                      .+|+=+|||-=|++. .+++.   +..|+++|++|+|++.+++=++ ..+++.+++++.+|+.+.-
T Consensus       122 ~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~  187 (276)
T PF03059_consen  122 SRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVT  187 (276)
T ss_dssp             -EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-
T ss_pred             ceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccc
Confidence            489988887666654 44433   4589999999999999998776 6688888999999987654

5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.

>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised

Probab=87.86  E-value=4  Score=39.50  Aligned_cols=61  Identities=13%  Similarity=0.136  Sum_probs=38.5

Q ss_pred             CCCeEEEecCCcchhHHHHhhc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHHHH
Q 046527           95 PGETICDMFAGIGPFAIPAAQK--GCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFIR  158 (380)
Q Consensus        95 ~g~~VLDlfcGvG~fsl~aA~~--g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~l~  158 (380)
                      .|+.||-+|=+ =..|+++|..  ..+|+.+|+++..+++.++.++..|+.  |+.+..|.++-++
T Consensus        44 ~gk~il~lGDD-DLtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~--i~~~~~DlR~~LP  106 (243)
T PF01861_consen   44 EGKRILFLGDD-DLTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLP--IEAVHYDLRDPLP  106 (243)
T ss_dssp             TT-EEEEES-T-T-HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT----EEEE---TTS---
T ss_pred             cCCEEEEEcCC-cHHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCc--eEEEEecccccCC
Confidence            57889888633 3455655543  459999999999999999999999996  8999888876553

All the members are 350-400 amino acids long.; PDB: 2QM3_A.

>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]

Probab=87.35  E-value=3.4  Score=41.29  Aligned_cols=68  Identities=16%  Similarity=0.099  Sum_probs=57.5

Q ss_pred             ccCCCCeEEEecCCcchhHHHHhhcC---CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHHHHHHh
Q 046527           92 QFRPGETICDMFAGIGPFAIPAAQKG---CIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFIRQLM  161 (380)
Q Consensus        92 ~i~~g~~VLDlfcGvG~fsl~aA~~g---~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~l~~l~  161 (380)
                      .+.++...+|.--|.|+-+-.+....   ++++|+|.+|.|++.|++-...++  +++.++++.-.++...+.
T Consensus        20 ~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~--~r~~~v~~~F~~l~~~l~   90 (314)
T COG0275          20 APKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFD--GRVTLVHGNFANLAEALK   90 (314)
T ss_pred             ccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccC--CcEEEEeCcHHHHHHHHH
Confidence            35677899999999999999988774   489999999999999999887655  679999998777766554

>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=87.34  E-value=0.92  Score=44.23  Aligned_cols=43  Identities=16%  Similarity=0.047  Sum_probs=34.0

Q ss_pred             CCCeEEEecCCcchhHHHHhhc---CCEEEEEeCCHHHHHHHHHHH
Q 046527           95 PGETICDMFAGIGPFAIPAAQK---GCIVFANDLNPDSVHYLKINA  137 (380)
Q Consensus        95 ~g~~VLDlfcGvG~fsl~aA~~---g~~V~avDlnp~Aie~a~~Na  137 (380)
                      ...+|||+|||.|+....+...   -.+++++|.|+.+++.++.=+
T Consensus        33 ~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~   78 (274)
T PF09243_consen   33 RPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLL   78 (274)
T ss_pred             CCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHH
Confidence            3468999999999877665542   238999999999999888744

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation

>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=87.14  E-value=1.1  Score=45.23  Aligned_cols=46  Identities=24%  Similarity=0.271  Sum_probs=40.1

Q ss_pred             HhccCCCCeEEEecCC-cchhHHHHhhc-CC-EEEEEeCCHHHHHHHHH
Q 046527           90 ISQFRPGETICDMFAG-IGPFAIPAAQK-GC-IVFANDLNPDSVHYLKI  135 (380)
Q Consensus        90 i~~i~~g~~VLDlfcG-vG~fsl~aA~~-g~-~V~avDlnp~Aie~a~~  135 (380)
                      ...++.|.+||-+||| +|..++..|+. |+ +|+.+|+++.-++.|++
T Consensus       164 ~~~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~  212 (354)
T KOG0024|consen  164 RAGVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK  212 (354)
T ss_pred             hcCcccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH
Confidence            4678999999999998 78888888875 55 99999999999999987

>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]

Probab=86.59  E-value=0.047  Score=56.33  Aligned_cols=136  Identities=25%  Similarity=0.230  Sum_probs=89.8

Q ss_pred             CEEEEEcCCCCcccHHHHHHHHHhccCCCeeEEEEecCCccccccccceEEEecCCccEEEEEeCCeEEEEccCc-eeec
Q 046527            1 HIAHLNIHDELLPFKDVIAKVIYDKNYPRIKTVVNKVGTIANEFRVPEFEILAGEDNMVTEVKQYGATFKLDYSL-VYWN   79 (380)
Q Consensus         1 hIahinl~~~~lp~k~~I~~aLldk~~p~iktVv~k~~~i~~~~r~~~~elLaG~~~~~~~v~E~G~~F~id~~~-ff~n   79 (380)
                      |+|+..|+.+.+||++.|++..++|+.+.+.++.++++.+...+++...+++++-..+.+..-|.+..|+.+... -+++
T Consensus       306 mda~~Flr~e~~~~~~~I~~~v~~kl~k~~~t~~~~~d~~p~~~~~~~~~i~hvvmnLPa~avefL~~F~~~la~k~~~d  385 (495)
T KOG2078|consen  306 MDAKDFLRQEPLPYKRLIADEVLDKLMKKIGTVVNKIDRIPQPFRTMQLHIVHVVMNLPASAVEFLLRFSGDLARKGPID  385 (495)
T ss_pred             ccHHHHhhcCCchhhhHHHHHHhhhhhhhhcccccccccCCCcccccchhhhhhhccChHHHHHHHHHhHHHHhccCccc
Confidence            678899999999999999999999877889999999988888888777777777554444333444455544443 1111


Q ss_pred             ChH-----------------HHHHHHHHhccCCCCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCC
Q 046527           80 SRL-----------------EHEHLRIISQFRPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKV  142 (380)
Q Consensus        80 ~rl-----------------~tE~~r~i~~i~~g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~lN~l  142 (380)
                      ++.                 .+|-+ +.+.   -...++++++.|  ++..+....+|...+...-+...+-.|.-.|++
T Consensus       386 ~~~lplvhcy~F~k~~~~~~s~e~~-V~ar---~~~~~kv~~e~~--~~~~~h~VR~VapnK~M~ca~~~lp~~~l~~~~  459 (495)
T KOG2078|consen  386 KTPLPLVHCYCFSKLFCDVSSTEDL-VTAR---IVAALKVFAEDG--ALVSLHLVRKVAPNKEMYCASFQLPANVLVNEL  459 (495)
T ss_pred             cccceeEEEEEEeecccCCCchHHH-HHHH---HHhhcceeeccc--cceeeeeeeccCCCcccchhhhhcHHHHhhhhh
Confidence            110                 11111 1100   013456677777  333333445888889888888888888877765

>TIGR00497 hsdM type I restriction system adenine methylase (hsdM)

Probab=85.36  E-value=2.9  Score=44.17  Aligned_cols=71  Identities=15%  Similarity=0.263  Sum_probs=51.6

Q ss_pred             cCceeecChHHHHHH-HHHhc-cCCCCeEEEecCCcchhHHHHhhc---C---CEEEEEeCCHHHHHHHHHHHHHcCCC
Q 046527           73 YSLVYWNSRLEHEHL-RIISQ-FRPGETICDMFAGIGPFAIPAAQK---G---CIVFANDLNPDSVHYLKINAKVNKVD  143 (380)
Q Consensus        73 ~~~ff~n~rl~tE~~-r~i~~-i~~g~~VLDlfcGvG~fsl~aA~~---g---~~V~avDlnp~Aie~a~~Na~lN~l~  143 (380)
                      +...|+.++...+.+ +++.. ..++..|.|++||+|.|-+...+.   +   ..+++.|.++.++..++.|+.++++.
T Consensus       193 ~~g~~~Tp~~Iv~l~~~~~~~~~dp~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~~  271 (501)
T TIGR00497       193 SGGEFFTPQDISELLARIAIGKKDTVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNID  271 (501)
T ss_pred             cCceeeCcHHHHHHHHHHhccCCCCCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCCC
Confidence            344666666444443 32322 336689999999999998865532   2   26999999999999999999988764

Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).

>PTZ00357 methyltransferase; Provisional

Probab=84.95  E-value=1.2  Score=48.88  Aligned_cols=59  Identities=15%  Similarity=0.209  Sum_probs=43.2

Q ss_pred             eEEEecCCcchhHHHHhh---c-CC--EEEEEeCCHHHHHHHHHHHH-HcCC-------CCcEEEEeccHHHH
Q 046527           98 TICDMFAGIGPFAIPAAQ---K-GC--IVFANDLNPDSVHYLKINAK-VNKV-------DNYVRAYNMDAREF  156 (380)
Q Consensus        98 ~VLDlfcGvG~fsl~aA~---~-g~--~V~avDlnp~Aie~a~~Na~-lN~l-------~~ri~~~~~Da~e~  156 (380)
                      +|+-+|||-|++.-.+.+   . +.  +|+|||.||.++.....+.. ...+       .++|+++..|++++
T Consensus       703 VImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W  775 (1072)
T PTZ00357        703 HLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTI  775 (1072)
T ss_pred             EEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCccccc
Confidence            589999999999654433   2 32  89999999887656555532 2244       45799999999988

>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=84.87  E-value=0.99  Score=42.54  Aligned_cols=52  Identities=27%  Similarity=0.298  Sum_probs=41.7

Q ss_pred             hccCCCCeEEEecCCcchhHHHHhhcCC---EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHH
Q 046527           91 SQFRPGETICDMFAGIGPFAIPAAQKGC---IVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAR  154 (380)
Q Consensus        91 ~~i~~g~~VLDlfcGvG~fsl~aA~~g~---~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~  154 (380)
                      .-+.+|.+|+||||--|.++-.+++...   .|+|+|+.|-..           +.+ |.++++|++
T Consensus        41 ~i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~-----------~~~-V~~iq~d~~   95 (205)
T COG0293          41 KLFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKP-----------IPG-VIFLQGDIT   95 (205)
T ss_pred             CeecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccccc-----------CCC-ceEEeeecc
Confidence            3467899999999999999999998743   599999998432           234 888999874

>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]

Probab=84.42  E-value=2.1  Score=43.73  Aligned_cols=66  Identities=27%  Similarity=0.302  Sum_probs=50.4

Q ss_pred             HhccCCCCeEEEecCCcchhHHHHhhcCC------EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHH
Q 046527           90 ISQFRPGETICDMFAGIGPFAIPAAQKGC------IVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREF  156 (380)
Q Consensus        90 i~~i~~g~~VLDlfcGvG~fsl~aA~~g~------~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~  156 (380)
                      +..+++|++||||||--|.=++.+....+      .|+|+|.++.=+.+++.-+..-.-.+ +.+.+.|+..+
T Consensus       150 ~L~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~~-~~v~~~~~~~~  221 (375)
T KOG2198|consen  150 ALGVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSPN-LLVTNHDASLF  221 (375)
T ss_pred             hcccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCcc-eeeecccceec
Confidence            35678999999999999999987776543      89999999999999998875544333 55566655433

>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]

Probab=84.28  E-value=2.4  Score=43.61  Aligned_cols=45  Identities=22%  Similarity=0.127  Sum_probs=35.9

Q ss_pred             hccCCCCeEEEecCCcchhHHHHhhc-CCEEEEEeCCHHHHHHHHH
Q 046527           91 SQFRPGETICDMFAGIGPFAIPAAQK-GCIVFANDLNPDSVHYLKI  135 (380)
Q Consensus        91 ~~i~~g~~VLDlfcGvG~fsl~aA~~-g~~V~avDlnp~Aie~a~~  135 (380)
                      ..+.+-+.|+|+|+|.|.++-.++-. |-.|+|||.|..+.+.|++
T Consensus       149 ~~f~gi~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq~~~~ra~r  194 (476)
T KOG2651|consen  149 SDFTGIDQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQRLVERAQR  194 (476)
T ss_pred             HhhcCCCeeEEcCCCchHHHHHHhhccCceEEEeccchHHHHHHHH
Confidence            33445579999999999999988854 6699999999777766553

>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]

Probab=82.74  E-value=2.4  Score=42.97  Aligned_cols=64  Identities=30%  Similarity=0.412  Sum_probs=45.7

Q ss_pred             hccCCCCeEEEecCC-cchhHHHHhhc-CC-EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEec----cHHHHHHHHh
Q 046527           91 SQFRPGETICDMFAG-IGPFAIPAAQK-GC-IVFANDLNPDSVHYLKINAKVNKVDNYVRAYNM----DAREFIRQLM  161 (380)
Q Consensus        91 ~~i~~g~~VLDlfcG-vG~fsl~aA~~-g~-~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~----Da~e~l~~l~  161 (380)
                      ..+.+|+.|.-.||| +|.-++.-|+. |+ +|+|+|+|++-+++|++    .|..   .+++.    |+.+.+.++.
T Consensus       181 a~v~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~----fGAT---~~vn~~~~~~vv~~i~~~T  251 (366)
T COG1062         181 AKVEPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKK----FGAT---HFVNPKEVDDVVEAIVELT  251 (366)
T ss_pred             ccCCCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHh----cCCc---eeecchhhhhHHHHHHHhc
Confidence            467889988888776 77777777764 55 99999999999999874    3433   23433    5666666554

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=82.63  E-value=2.6  Score=42.69  Aligned_cols=46  Identities=24%  Similarity=0.339  Sum_probs=38.2

Q ss_pred             hccCCCCeEEEecCC-cchhHHHHhh-cCCEEEEEeCCHHHHHHHHHH
Q 046527           91 SQFRPGETICDMFAG-IGPFAIPAAQ-KGCIVFANDLNPDSVHYLKIN  136 (380)
Q Consensus        91 ~~i~~g~~VLDlfcG-vG~fsl~aA~-~g~~V~avDlnp~Aie~a~~N  136 (380)
                      ..+++|++|+-.|+| .|..++.+|+ .|++|+++|.+++-.+.|++=
T Consensus       162 ~~~~pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~l  209 (339)
T COG1064         162 ANVKPGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKL  209 (339)
T ss_pred             cCCCCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHh
Confidence            457889999888776 6777888887 589999999999999988753

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=82.28  E-value=3  Score=44.25  Aligned_cols=71  Identities=15%  Similarity=0.266  Sum_probs=41.8

Q ss_pred             CCeEEEEccCceeecChHHH--HHH-HHHhcc-CCC--CeEEEecCCcchhHHHHhhcCCEEEEE---eCCHHHHHHHHH
Q 046527           65 YGATFKLDYSLVYWNSRLEH--EHL-RIISQF-RPG--ETICDMFAGIGPFAIPAAQKGCIVFAN---DLNPDSVHYLKI  135 (380)
Q Consensus        65 ~G~~F~id~~~ff~n~rl~t--E~~-r~i~~i-~~g--~~VLDlfcGvG~fsl~aA~~g~~V~av---Dlnp~Aie~a~~  135 (380)
                      .|=.|.|.-+.-.|.+....  +.+ ..+..+ ..|  .++||+|||+|.|+..+..++..+.++   |..+..++.|.+
T Consensus        81 ~gd~~~FPgggt~F~~Ga~~Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfale  160 (506)
T PF03141_consen   81 EGDKFRFPGGGTMFPHGADHYIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFALE  160 (506)
T ss_pred             cCCEEEeCCCCccccCCHHHHHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhhhh
Confidence            55567776665433332211  122 222221 223  478999999999999999998755443   555555665543

; GO: 0008168 methyltransferase activity

>COG3392 Adenine-specific DNA methylase [DNA replication, recombination, and repair]

Probab=81.48  E-value=1.1  Score=43.87  Aligned_cols=40  Identities=33%  Similarity=0.444  Sum_probs=34.6

Q ss_pred             hccCCCCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHH
Q 046527           91 SQFRPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSV  130 (380)
Q Consensus        91 ~~i~~g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Ai  130 (380)
                      .....|..++|+|+|+|..+-.+-+.|..|+++|+--.+.
T Consensus        23 k~~~s~k~f~DiFaGtGVV~~~fkk~~n~iiaNDle~ysy   62 (330)
T COG3392          23 KEDLSGKIFCDIFAGTGVVGRFFKKAGNKIIANDLEYYSY   62 (330)
T ss_pred             hcccCCCeeeeeccCccHHHHHHHHhcchhhhchHHHHHH
Confidence            3466788999999999999999999999999999866554

>KOG2920 consensus Predicted methyltransferase [General function prediction only]

Probab=81.18  E-value=1.2  Score=43.95  Aligned_cols=40  Identities=23%  Similarity=0.231  Sum_probs=35.8

Q ss_pred             ccCCCCeEEEecCCcchhHHHHhhcC-CEEEEEeCCHHHHH
Q 046527           92 QFRPGETICDMFAGIGPFAIPAAQKG-CIVFANDLNPDSVH  131 (380)
Q Consensus        92 ~i~~g~~VLDlfcGvG~fsl~aA~~g-~~V~avDlnp~Aie  131 (380)
                      ....|++|||+|||.|.-++.+..+| ..|...|.|.+.++
T Consensus       113 ~~~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl~  153 (282)
T KOG2920|consen  113 MSFSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLR  153 (282)
T ss_pred             eEecCceeEecCCcccccchhhhhhccceeeeEecchhhee
Confidence            34678999999999999999999998 59999999998885

>COG1568 Predicted methyltransferases [General function prediction only]

Probab=81.06  E-value=6.4  Score=39.13  Aligned_cols=62  Identities=18%  Similarity=0.220  Sum_probs=49.3

Q ss_pred             CCeEEEecCCcchhHHHHhhcCC--EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHHHHH
Q 046527           96 GETICDMFAGIGPFAIPAAQKGC--IVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFIRQ  159 (380)
Q Consensus        96 g~~VLDlfcGvG~fsl~aA~~g~--~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~l~~  159 (380)
                      |+.|+-+| ---.+|+++|-.+.  +|..+|+++..+....+-++.-|+.| ++.+.-|.+.-+.+
T Consensus       153 gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~~~-ie~~~~Dlr~plpe  216 (354)
T COG1568         153 GKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGYNN-IEAFVFDLRNPLPE  216 (354)
T ss_pred             CCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCccc-hhheeehhcccChH
Confidence            55677777 56677887776654  99999999999999999999999886 88887777765543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	380
2zzn_A	336	The Complex Structure Of Atrm5 And Trnacys Length =		4e-16
2zzm_A	336	The Complex Structure Of Atrm5 And Trnaleu Length =		2e-15
3a25_A	301	Crystal Structure Of P. Horikoshii Tyw2 In Complex		4e-15
2yx1_A	336	Crystal Structure Of M.Jannaschii Trna M1g37 Methyl		5e-15
3a27_A	272	Crystal Structure Of M. Jannaschii Tyw2 In Complex		1e-13
3k6r_A	278	Crystal Structure Of Putative Transferase Ph0793 Fr		5e-13
2vs1_A	425	The Crystal Structure Of Pyrococcus Abyssi Trna (Ur		8e-04
2jjq_A	425	The Crystal Structure Of Pyrococcus Abyssi Trna (Ur		8e-04

>pdb|2ZZN|A Chain A, The Complex Structure Of Atrm5 And Trnacys Length = 336

Iteration: 1
 Score = 82.4 bits (202), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 46/125 (36%), Positives = 72/125 (57%), Gaps = 1/125 (0%)
Query: 31  KTVVNKVGTIANEFRVPEFEILAGEDNMVTEVKQYGATFKLDYSLVYWNSRLEHEHLRII 90
           K V  +   +  EFRV E E LAGE+  +T  K+ G    +D + VY++ RL  E  RI+
Sbjct: 131 KGVFRRKSEVKGEFRVRELEHLAGENRTLTIHKENGYRLWVDIAKVYFSPRLGGERARIM 190
Query: 91  SQFRPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYN 150
            +    + + DMFAG+GPF+I A +    ++A D+NP ++  LK N K+NK+++ +    
Sbjct: 191 KKVSLNDVVVDMFAGVGPFSI-ACKNAKKIYAIDINPHAIELLKKNIKLNKLEHKIIPIL 249
Query: 151 MDARE 155
            D RE
Sbjct: 250 SDVRE 254

>pdb|2ZZM|A Chain A, The Complex Structure Of Atrm5 And Trnaleu Length = 336

Iteration: 1
 Score = 80.1 bits (196), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 45/125 (36%), Positives = 71/125 (56%), Gaps = 1/125 (0%)
Query: 31  KTVVNKVGTIANEFRVPEFEILAGEDNMVTEVKQYGATFKLDYSLVYWNSRLEHEHLRII 90
           K V  +   +  EFRV E E LAGE+  +T  K+ G    +D + VY++ RL  E  RI+
Sbjct: 131 KGVFRRKSEVKGEFRVRELEHLAGENRTLTIHKENGYRLWVDIAKVYFSPRLGGERARIM 190
Query: 91  SQFRPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYN 150
            +    + + DMFAG+GPF+I A +    ++A D+NP ++  L  N K+NK+++ +    
Sbjct: 191 KKVSLNDVVVDMFAGVGPFSI-ACKNAKKIYAIDINPHAIELLXKNIKLNKLEHKIIPIL 249
Query: 151 MDARE 155
            D RE
Sbjct: 250 SDVRE 254

>pdb|3A25|A Chain A, Crystal Structure Of P. Horikoshii Tyw2 In Complex With Adomet Length = 301

Iteration: 1
 Score = 79.0 bits (193), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 47/128 (36%), Positives = 74/128 (57%), Gaps = 3/128 (2%)
Query: 30  IKTVVNKVGTIANEFRVPEFEILAGEDNMVTEVKQYGATFKLDYSLVYWNSRLEHEHLRI 89
           +KTV+ K G I  E R P++E+L G D +   V+  G  +KLD + + ++     E +R+
Sbjct: 85  VKTVLRK-GHIHGETRKPDYELLYGSDTVTVHVEN-GIKYKLDVAKIMFSPANVKERVRM 142
Query: 90  ISQFRPGETICDMFAGIGPFAIPAAQKG-CIVFANDLNPDSVHYLKINAKVNKVDNYVRA 148
               +P E + DMFAGIG  ++P A  G   V A + +P +  +L  N  +NKV++ + A
Sbjct: 143 AKVAKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSA 202
Query: 149 YNMDAREF 156
           YNMD R+F
Sbjct: 203 YNMDNRDF 210

>pdb|2YX1|A Chain A, Crystal Structure Of M.Jannaschii Trna M1g37 Methyltransferase Length = 336

Iteration: 1
 Score = 79.0 bits (193), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 45/125 (36%), Positives = 70/125 (56%), Gaps = 1/125 (0%)
Query: 31  KTVVNKVGTIANEFRVPEFEILAGEDNMVTEVKQYGATFKLDYSLVYWNSRLEHEHLRII 90
           K V  +   +  EFRV E E LAGE+  +T  K+ G    +D + VY++ RL  E  RI 
Sbjct: 131 KGVFRRKSEVKGEFRVRELEHLAGENRTLTIHKENGYRLWVDIAKVYFSPRLGGERARIX 190
Query: 91  SQFRPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYN 150
            +    + + D FAG+GPF+I A +    ++A D+NP ++  LK N K+NK+++ +    
Sbjct: 191 KKVSLNDVVVDXFAGVGPFSI-ACKNAKKIYAIDINPHAIELLKKNIKLNKLEHKIIPIL 249
Query: 151 MDARE 155
            D RE
Sbjct: 250 SDVRE 254

>pdb|3A27|A Chain A, Crystal Structure Of M. Jannaschii Tyw2 In Complex With Adomet Length = 272

Iteration: 1
 Score = 74.3 bits (181), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 44/118 (37%), Positives = 64/118 (54%), Gaps = 3/118 (2%)
Query: 31  KTVVNKVGTIANEFRVPEFEILAGEDNMVTEVKQYGATFKLDYSLVYWNSRLEHEHLRII 90
           K ++     I  EFR P  +IL G++      K+YG  FKLD + + W+     E  R+ 
Sbjct: 56  KAILLYTTQITGEFRTPHVKILYGKETETIH-KEYGCLFKLDVAKIMWSQGNIEERKRMA 114
Query: 91  SQFRPGETICDMFAGIGPFAIPAAQ--KGCIVFANDLNPDSVHYLKINAKVNKVDNYV 146
                 E + DMFAGIG F IP A+  K  +V+A + NP + HYL  N K+NK++N +
Sbjct: 115 FISNENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKLNNVI 172

>pdb|3K6R|A Chain A, Crystal Structure Of Putative Transferase Ph0793 From Pyrococcus Horikoshii Length = 278

Iteration: 1
 Score = 72.0 bits (175), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 45/128 (35%), Positives = 70/128 (54%), Gaps = 3/128 (2%)
Query: 30  IKTVVNKVGTIANEFRVPEFEILAGEDNMVTEVKQYGATFKLDYSLVYWNSRLEHEHLRI 89
           +KTV+ K G I  E R P++E+L G D +   V+  G  +KLD + + ++     E +R 
Sbjct: 62  VKTVLRK-GHIHGETRKPDYELLYGSDTVTVHVEN-GIKYKLDVAKIXFSPANVKERVRX 119
Query: 90  ISQFRPGETICDMFAGIGPFAIPAAQKG-CIVFANDLNPDSVHYLKINAKVNKVDNYVRA 148
               +P E + D FAGIG  ++P A  G   V A + +P +  +L  N  +NKV++   A
Sbjct: 120 AKVAKPDELVVDXFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRXSA 179
Query: 149 YNMDAREF 156
           YN D R+F
Sbjct: 180 YNXDNRDF 187

>pdb|2VS1|A Chain A, The Crystal Structure Of Pyrococcus Abyssi Trna (Uracil-54, C5)-Methyltransferase In Complex With S-Adenosyl-L- Homocysteine Length = 425

Iteration: 1
 Score = 41.6 bits (96), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 33/57 (57%)
Query: 87  LRIISQFRPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKVD 143
           +R +S+   GE I DM++G+G F I  A++G  V   D N  ++   + N ++N VD
Sbjct: 282 VRKVSELVEGEKILDMYSGVGTFGIYLAKRGFNVKGFDSNEFAIEMARRNVEINNVD 338

>pdb|2JJQ|A Chain A, The Crystal Structure Of Pyrococcus Abyssi Trna (Uracil-54, C5)-Methyltransferase In Complex With S-Adenosyl-L- Homocysteine Length = 425

Iteration: 1
 Score = 41.6 bits (96), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 33/57 (57%)
Query: 87  LRIISQFRPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKVD 143
           +R +S+   GE I DM++G+G F I  A++G  V   D N  ++   + N ++N VD
Sbjct: 282 VRKVSELVEGEKILDMYSGVGTFGIYLAKRGFNVKGFDSNEFAIEMARRNVEINNVD 338

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	380
2yx1_A	336	Hypothetical protein MJ0883; methyl transferase, t	5e-59
2yx1_A	336	Hypothetical protein MJ0883; methyl transferase, t	9e-19
2frn_A	278	Hypothetical protein PH0793; structural genomics,	2e-45
2frn_A	278	Hypothetical protein PH0793; structural genomics,	1e-17
3a27_A	272	TYW2, uncharacterized protein MJ1557; wybutosine m	1e-42
3a27_A	272	TYW2, uncharacterized protein MJ1557; wybutosine m	2e-14
3gdh_A	241	Trimethylguanosine synthase homolog; M7G, CAP, dim	6e-12
1wxx_A	382	TT1595, hypothetical protein TTHA1280; thermus the	3e-09
2as0_A	396	Hypothetical protein PH1915; RNA methyltransferase	7e-09
3bt7_A	369	TRNA (uracil-5-)-methyltransferase; methyluridine,	8e-09
4dmg_A	393	Putative uncharacterized protein TTHA1493; rRNA, m	6e-08
1uwv_A	433	23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m	8e-08
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	1e-07
2jjq_A	425	Uncharacterized RNA methyltransferase pyrab10780;	2e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-07
3c0k_A	396	UPF0064 protein YCCW; PUA domain, adoMet dependent	6e-07
2dul_A	378	N(2),N(2)-dimethylguanosine tRNA methyltransferas;	7e-07
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	7e-07
3axs_A	392	Probable N(2),N(2)-dimethylguanosine tRNA methylt	1e-06
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	4e-06
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	4e-06
3ll7_A	410	Putative methyltransferase; methytransferase, stru	5e-06
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	1e-05
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	2e-05
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	9e-05
2b78_A	385	Hypothetical protein SMU.776; structure genomics,	1e-04
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	2e-04
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	2e-04
2r6z_A	258	UPF0341 protein in RSP 3' region; alpha-beta prote	2e-04
2igt_A	332	SAM dependent methyltransferase; alpha-beta sandwi	3e-04
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	4e-04
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	5e-04
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	6e-04
2fhp_A	187	Methylase, putative; alpha-beta-alpha sandwich, st	7e-04

>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A* Length = 336

 Score =  193 bits (493), Expect = 5e-59
 Identities = 53/174 (30%), Positives = 85/174 (48%), Gaps = 8/174 (4%)

Query: 1   HIAHLNIHDEL-LPFKDVIAKVIYDKNYPRIKTVVNKVGTIANEFRVPEFEILAGEDNMV 59
            +  L I DE+    +  I ++ Y       K V  +   +  EFRV E E LAGE+  +
Sbjct: 102 DLVILQISDEVDEKIRKEIGELAYKLI--PCKGVFRRKSEVKGEFRVRELEHLAGENRTL 159

Query: 60  TEVKQYGATFKLDYSLVYWNSRLEHEHLRIISQFRPGETICDMFAGIGPFAIPAAQKGCI 119
           T  K+ G    +D + VY++ RL  E  RI+ +    + + DMFAG+GPF+I        
Sbjct: 160 TIHKENGYRLWVDIAKVYFSPRLGGERARIMKKVSLNDVVVDMFAGVGPFSIACK-NAKK 218

Query: 120 VFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFIRQ----LMTAPAGEIN 169
           ++A D+NP ++  LK N K+NK+++ +     D RE   +    +M  P     
Sbjct: 219 IYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREVDVKGNRVIMNLPKFAHK 272

>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A* Length = 336

 Score = 85.3 bits (211), Expect = 9e-19
 Identities = 19/90 (21%), Positives = 37/90 (41%), Gaps = 11/90 (12%)

Query: 270 EHVDHIIMNLPASALKFLDAFRGLIQRQYWKGSLPWIHCYCFIRANETEELIISEAESAL 329
              + +IMNLP  A KF+D    +++          IH Y   +  +     I   E   
Sbjct: 257 VKGNRVIMNLPKFAHKFIDKALDIVE------EGGVIHYYTIGKDFDK---AIKLFEKKC 307

Query: 330 NACIQDPIFHKVRNVAPNKAMFCLSFRLPE 359
           +  + +     V++ AP + +  L F++ +
Sbjct: 308 DCEVLE--KRIVKSYAPREYILALDFKINK 335

>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} SCOP: c.66.1.47 PDB: 3k6r_A 3a25_A* 3a26_A* Length = 278

 Score =  156 bits (396), Expect = 2e-45
 Identities = 53/160 (33%), Positives = 86/160 (53%), Gaps = 5/160 (3%)

Query: 1   HIAHLNIHDELLPFKDVIAKVIYDKNYPRIKTVVNKVGTIANEFRVPEFEILAGEDNMVT 60
            +  L +  EL P+K  IA+V  +     +KTV+ K G I  E R P++E+L G D +  
Sbjct: 35  DVLLLPLRPELEPYKHRIAEVYAEV--LGVKTVLRK-GHIHGETRKPDYELLYGSDTVTV 91

Query: 61  EVKQYGATFKLDYSLVYWNSRLEHEHLRIISQFRPGETICDMFAGIGPFAIPAAQK-GCI 119
              + G  +KLD + + ++     E +R+    +P E + DMFAGIG  ++P A      
Sbjct: 92  -HVENGIKYKLDVAKIMFSPANVKERVRMAKVAKPDELVVDMFAGIGHLSLPIAVYGKAK 150

Query: 120 VFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFIRQ 159
           V A + +P +  +L  N  +NKV++ + AYNMD R+F  +
Sbjct: 151 VIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGE 190

>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} SCOP: c.66.1.47 PDB: 3k6r_A 3a25_A* 3a26_A* Length = 278

 Score = 81.1 bits (200), Expect = 1e-17
 Identities = 11/99 (11%), Positives = 27/99 (27%), Gaps = 9/99 (9%)

Query: 265 NTKTWEHVDHIIMNLPASALKFLDAFRGLIQRQYWKGSLPWIHCYCFIRANETEELIISE 324
           +       D I+M       +F+     + +          IH +  +            
Sbjct: 186 DFPGENIADRILMGYVVRTHEFIPKALSIAKDG------AIIHYHNTVPEKLMPREPFET 239

Query: 325 AESALNAC---IQDPIFHKVRNVAPNKAMFCLSFRLPEA 360
            +         ++     K++  AP      L  R+ ++
Sbjct: 240 FKRITKEYGYDVEKLNELKIKRYAPGVWHVVLDLRVFKS 278

>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii} Length = 272

 Score =  149 bits (376), Expect = 1e-42
 Identities = 46/161 (28%), Positives = 75/161 (46%), Gaps = 11/161 (6%)

Query: 1   HIAHLNIHDELLPFKDVIAKVIYDKNYPRIKTVVNKVGTIANEFRVPEFEILAGEDNMVT 60
            +  +         ++++ +        + K ++     I  EFR P  +IL G++   T
Sbjct: 33  DVVIVKKELSEDEIREIVKR-------TKCKAILLYTTQITGEFRTPHVKILYGKETE-T 84

Query: 61  EVKQYGATFKLDYSLVYWNSRLEHEHLRIISQFRPGETICDMFAGIGPFAIPA--AQKGC 118
             K+YG  FKLD + + W+     E  R+       E + DMFAGIG F IP     K  
Sbjct: 85  IHKEYGCLFKLDVAKIMWSQGNIEERKRMAFISNENEVVVDMFAGIGYFTIPLAKYSKPK 144

Query: 119 IVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFIRQ 159
           +V+A + NP + HYL  N K+NK++N +     D R+   +
Sbjct: 145 LVYAIEKNPTAYHYLCENIKLNKLNNVIP-ILADNRDVELK 184

>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii} Length = 272

 Score = 71.6 bits (175), Expect = 2e-14
 Identities = 15/97 (15%), Positives = 30/97 (30%), Gaps = 9/97 (9%)

Query: 265 NTKTWEHVDHIIMNLPASALKFLDAFRGLIQRQYWKGSLPWIHCYCFIRANETEELIISE 324
           + +  +  D +IM       KFLD     ++ +        IH +  +      E  I  
Sbjct: 180 DVELKDVADRVIMGYVHKTHKFLDKTFEFLKDR------GVIHYHETVAEKIMYERPIER 233

Query: 325 AESALNAC---IQDPIFHKVRNVAPNKAMFCLSFRLP 358
            +         + D    K++  AP      +  +  
Sbjct: 234 LKFYAEKNGYKLIDYEVRKIKKYAPGVWHVVVDAKFE 270

>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* Length = 241

 Score = 63.9 bits (155), Expect = 6e-12
 Identities = 21/98 (21%), Positives = 37/98 (37%), Gaps = 2/98 (2%)

Query: 65  YGATFKLDYSLVYW--NSRLEHEHLRIISQFRPGETICDMFAGIGPFAIPAAQKGCIVFA 122
           +    KLD    +     ++       +SQ    + + D F G+G   I  A  G  V A
Sbjct: 46  FDDGIKLDREGWFSVTPEKIAEHIAGRVSQSFKCDVVVDAFCGVGGNTIQFALTGMRVIA 105

Query: 123 NDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFIRQL 160
            D++P  +   + NA+V  + + +     D       L
Sbjct: 106 IDIDPVKIALARNNAEVYGIADKIEFICGDFLLLASFL 143

>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A* Length = 382

 Score = 57.0 bits (138), Expect = 3e-09
 Identities = 36/158 (22%), Positives = 67/158 (42%), Gaps = 22/158 (13%)

Query: 13  PFKDVIAKVIYDKNYPRIKTVVNKVGTIANEFRVPEFE-------ILAGEDNMVTEVKQY 65
                +A+ +     P +++V+ K     N+ R  E E        L GE     +V++ 
Sbjct: 128 GLLPQVAEALR----PHVQSVLAK-----NDARTRELEGLPLYVRPLLGEVPERVQVQEG 178

Query: 66  GATFKLDYSLVYWNSR---LEHEHLRIISQFRPGETICDMFAGIGPFAIPAAQKGCIVFA 122
              + +D  L         L+    R+  +   GE   D+F+  G FA+  A     V A
Sbjct: 179 RVRYLVD--LRAGQKTGAYLDQRENRLYMERFRGERALDVFSYAGGFALHLALGFREVVA 236

Query: 123 NDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFIRQL 160
            D + +++   + NA++N + N VR    +A + +R+L
Sbjct: 237 VDSSAEALRRAEENARLNGLGN-VRVLEANAFDLLRRL 273

>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51 Length = 396

 Score = 55.9 bits (135), Expect = 7e-09
 Identities = 41/155 (26%), Positives = 71/155 (45%), Gaps = 10/155 (6%)

Query: 13  PFKDVIAKVIYDKNYPRIKTVVNK--VGTIANEFRVPEFEILAGEDNMVTEVKQYGATFK 70
            FK  +A+ I  +  P I+TV  K    +   E       +L G++   T +++  A F 
Sbjct: 132 RFKLDVAEAI-MEVEPGIETVFEKNTGRSRRREGLPEIERVLLGKEKYRTIIQEGRAKFI 190

Query: 71  LDYSLVYWNS--RLEHEHLR--IISQFRPGETICDMFAGIGPFAIPAAQKGCI-VFANDL 125
           +D  +    +   L+    R  +    +PG+ + D+F   G FAI AA  G   V   D 
Sbjct: 191 VD--MRGQKTGFFLDQRENRLALEKWVQPGDRVLDVFTYTGGFAIHAAIAGADEVIGIDK 248

Query: 126 NPDSVHYLKINAKVNKVDNYVRAYNMDAREFIRQL 160
           +P ++   K NAK+N V++ ++     A E + +L
Sbjct: 249 SPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKL 283

>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli} Length = 369

 Score = 55.7 bits (135), Expect = 8e-09
 Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 1/65 (1%)

Query: 96  GETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDARE 155
              + +++ G G F++  A+    V A ++   SV   + N   N +DN V+   M A E
Sbjct: 214 KGDLLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDN-VQIIRMAAEE 272

Query: 156 FIRQL 160
           F + +
Sbjct: 273 FTQAM 277

>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus} Length = 393

 Score = 53.1 bits (128), Expect = 6e-08
 Identities = 34/160 (21%), Positives = 64/160 (40%), Gaps = 23/160 (14%)

Query: 13  PFKDVIAKVIYDKNYPRIKTVVNKVGTIANEFRVPEFE-------ILAGEDNMVTEVKQY 65
             ++V    +        K V  +     ++      E       ++ GE   V EV++ 
Sbjct: 129 ALREVWLPAL--LEVVAPKGVYER-----SDVEARRQEGLPERVGVVYGEVPEVLEVEED 181

Query: 66  GATFKLDYSLVY---WNSRLEHEHLR--IISQFRPGETICDMFAGIGPFAIPAAQKGCIV 120
           G  F +  +L     +   L+    R    +  RPGE + D+++ +G FA+ AA+KG   
Sbjct: 182 GLRFPIPLALAQKTGYY--LDQRENRRLFEAMVRPGERVLDVYSYVGGFALRAARKGAYA 239

Query: 121 FANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFIRQL 160
            A D + +++  L   A    +   V   + +A   +R L
Sbjct: 240 LAVDKDLEALGVLDQAALRLGLR--VDIRHGEALPTLRGL 277

>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A* Length = 433

 Score = 52.9 bits (128), Expect = 8e-08
 Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 1/66 (1%)

Query: 95  PGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAR 154
           P + + D+F G+G F +P A +   V   +  P  V   + NA++N + N V  Y+ +  
Sbjct: 286 PEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQN-VTFYHENLE 344

Query: 155 EFIRQL 160
           E + + 
Sbjct: 345 EDVTKQ 350

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} Length = 178

 Score = 50.2 bits (120), Expect = 1e-07
 Identities = 16/86 (18%), Positives = 31/86 (36%), Gaps = 7/86 (8%)

Query: 85  EHLRIIS----QFRPGETICDMFAGIGPFAIPAAQ--KGCIVFANDLNPDSVHYLKINAK 138
           +H+R ++      +P ET+ D+  G G  AI   +          +++ +    +  NA 
Sbjct: 11  QHVRALAISALAPKPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAI 70

Query: 139 VNKVDNYVRAYNMDAREFIRQLMTAP 164
              V +   A    A      +   P
Sbjct: 71  NLGVSD-RIAVQQGAPRAFDDVPDNP 95

>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A* Length = 425

 Score = 51.4 bits (124), Expect = 2e-07
 Identities = 29/141 (20%), Positives = 57/141 (40%), Gaps = 12/141 (8%)

Query: 25  KNYPRIKTVVNKVGTIANEFRVPEFEILAGEDNMVTEVKQYGATFKLD----YSLVYWNS 80
            NY    ++   V    ++    + E   G++ +   +      + +     +     NS
Sbjct: 221 TNYFDFDSIYWSVNRSKSDVSYGDIERFWGKEFIRERLD--DVDYLIHPNSFFQT---NS 275

Query: 81  RLEHEHL-RIISQFRPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKV 139
             +  +L R +S+   GE I DM++G+G F I  A++G  V   D N  ++   + N ++
Sbjct: 276 -YQAVNLVRKVSELVEGEKILDMYSGVGTFGIYLAKRGFNVKGFDSNEFAIEMARRNVEI 334

Query: 140 NKVDNYVRAYNMDAREFIRQL 160
           N VD        D    ++  
Sbjct: 335 NNVDA-EFEVASDREVSVKGF 354

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 51.0 bits (121), Expect = 4e-07
 Identities = 55/373 (14%), Positives = 105/373 (28%), Gaps = 95/373 (25%)

Query: 24  DKNYPRIKTVVNKVGTIANEFRVPEFEILAGEDNMVTEVKQYGATFKLDYSLVYWN-SRL 82
             NY  + +       I  E R P              ++Q    +  +     +N SRL
Sbjct: 88  RINYKFLMS------PIKTEQRQPS-------MMTRMYIEQRDRLYNDNQVFAKYNVSRL 134

Query: 83  E-HEHLRI-ISQFRPGE--TICDMFAGIGP--FAIPAAQKGCIVFANDLNPDSVHYLKIN 136
           + +  LR  + + RP +   I  +  G G    A+       +          + +L + 
Sbjct: 135 QPYLKLRQALLELRPAKNVLIDGV-LGSGKTWVALDVCLSYKVQ---CKMDFKIFWLNL- 189

Query: 137 AKVNKVDNYVRAYNMDAREFIRQLMTAPAGEINSESDVFNLKACGNSGIQANKKTGIENV 196
              N  +  +        +      +      N +  + +++A     +  +K    EN 
Sbjct: 190 KNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQA-ELRRLLKSKP--YENC 246

Query: 197 GL---DVQDKEVAGNITSNSEGLQNYCRNADASVTATKRPSDGCLEENGTTNSASGRKGK 253
            L   +VQ+ +               C+     +  T R           T+  S     
Sbjct: 247 LLVLLNVQNAKAW-------NAFNLSCK-----ILLTTRFK-------QVTDFLSAATTT 287

Query: 254 ---TSKRMKGSELPNTKT----WEHVDHIIMNLPASALK--------FLDAFRGLIQR-Q 297
                           K+    +  +D    +LP   L           ++ R  +    
Sbjct: 288 HISLDHHSMTLTPDEVKSLLLKY--LDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWD 345

Query: 298 YWKGSLPWIHCYCFIRANETEELIISEAESALNACIQDPIFHKVRNVAPNKAMFCLSFRL 357
            WK           +  ++   +I    ES+LN    +P        A  + MF      
Sbjct: 346 NWK----------HVNCDKLTTII----ESSLNV--LEP--------AEYRKMFDRLSVF 381

Query: 358 PEACFSAKITRSV 370
           P    SA I   +
Sbjct: 382 PP---SAHIPTIL 391

>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12} Length = 396

 Score = 50.0 bits (120), Expect = 6e-07
 Identities = 21/161 (13%), Positives = 60/161 (37%), Gaps = 21/161 (13%)

Query: 13  PFKDVIAKVIYDKNYPRIKTVVNKVGTIANEFRVPEFEILAGED--------NMVTEVKQ 64
             +  +   +  +      ++ ++     ++  V + E +              +  +++
Sbjct: 135 YQRAALISAL--QTLYPECSIYDR-----SDVAVRKKEGMELTQGPVTGELPPALLPIEE 187

Query: 65  YGATFKLDYSLVYWNS--RLEHEHLR-IISQFRPGETICDMFAGIGPFAIPAAQKGCI-V 120
           +G    +D       +   L+    R    ++   + + + F+  G FA+ A   GC  V
Sbjct: 188 HGMKLLVDI-QHGHKTGYYLDQRDSRLATRRYVENKRVLNCFSYTGGFAVSALMGGCSQV 246

Query: 121 FANDLNPDSVHYLKINAKVNKVD-NYVRAYNMDAREFIRQL 160
            + D + +++   + N ++NK+D +       D  + +R  
Sbjct: 247 VSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTY 287

>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A* Length = 378

 Score = 49.8 bits (118), Expect = 7e-07
 Identities = 17/102 (16%), Positives = 37/102 (36%), Gaps = 18/102 (17%)

Query: 76  VYWNSRLEHEHLRIIS--QFRPGETICDMFAGIGPFAIPAAQK--GCIVFANDLNPDSVH 131
           V++N R+      ++        + + D  +  G   I  A +     V+ ND++ D+  
Sbjct: 26  VFYNPRMALNRDIVVVLLNILNPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYE 85

Query: 132 YLKINAKVN--------------KVDNYVRAYNMDAREFIRQ 159
            +K N  +N              K +  +   + DA   + +
Sbjct: 86  LMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMAE 127

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} Length = 204

 Score = 48.3 bits (115), Expect = 7e-07
 Identities = 14/81 (17%), Positives = 28/81 (34%), Gaps = 4/81 (4%)

Query: 84  HEHLRIIS----QFRPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKV 139
              +R ++      R GE + D+  G G  ++     G      +   D +  ++ N   
Sbjct: 40  KSPMRALTLAALAPRRGELLWDIGGGSGSVSVEWCLAGGRAITIEPRADRIENIQKNIDT 99

Query: 140 NKVDNYVRAYNMDAREFIRQL 160
             +   +RA    A   +  L
Sbjct: 100 YGLSPRMRAVQGTAPAALADL 120

>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A* Length = 392

 Score = 49.5 bits (117), Expect = 1e-06
 Identities = 18/95 (18%), Positives = 38/95 (40%), Gaps = 11/95 (11%)

Query: 76  VYWNSRLEHEHLRII-------SQFRPGETICDMFAGIGPFAIPAAQKG---CIVFANDL 125
           V++N R+       +        +      + D  +  G  AI    +       +AND+
Sbjct: 26  VFYNPRMRVNRDLAVLGLEYLCKKLGRPVKVADPLSASGIRAIRFLLETSCVEKAYANDI 85

Query: 126 NPDSVHYLKINAKVNKVDNY-VRAYNMDAREFIRQ 159
           +  ++  +K N K+N +       + M+A  F+R+
Sbjct: 86  SSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRK 120

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} Length = 183

 Score = 45.7 bits (109), Expect = 4e-06
 Identities = 15/80 (18%), Positives = 31/80 (38%), Gaps = 5/80 (6%)

Query: 85  EHLRIIS----QFRPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVN 140
           E +R +S         + + D+  G G   +  A++   V+A D    ++   K N    
Sbjct: 21  EEIRAVSIGKLNLNKDDVVVDVGCGSGGMTVEIAKRCKFVYAIDYLDGAIEVTKQNLAKF 80

Query: 141 KVDNYVRAYNMDAREFIRQL 160
            + N  +     A + + +L
Sbjct: 81  NIKN-CQIIKGRAEDVLDKL 99

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* Length = 192

 Score = 45.8 bits (109), Expect = 4e-06
 Identities = 14/67 (20%), Positives = 31/67 (46%)

Query: 94  RPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDA 153
              +   D+  G G   +  A +   V+A D NP+++   ++N + + + + V     DA
Sbjct: 32  GKNDVAVDVGCGTGGVTLELAGRVRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDA 91

Query: 154 REFIRQL 160
            E + ++
Sbjct: 92  PEALCKI 98

>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis} Length = 410

 Score = 47.1 bits (111), Expect = 5e-06
 Identities = 14/75 (18%), Positives = 28/75 (37%), Gaps = 3/75 (4%)

Query: 93  FRPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKV--NKVDNYVRAYN 150
            R G  + D+  G+G   I    K       + N ++    + N  +  N+  + V    
Sbjct: 91  IREGTKVVDLTGGLGIDFIALMSKASQGIYIERNDETAVAARHNIPLLLNEGKD-VNILT 149

Query: 151 MDAREFIRQLMTAPA 165
            D +E++  + T   
Sbjct: 150 GDFKEYLPLIKTFHP 164

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} Length = 286

 Score = 45.3 bits (107), Expect = 1e-05
 Identities = 12/80 (15%), Positives = 30/80 (37%), Gaps = 2/80 (2%)

Query: 77  YWNSRLEHEHLRIISQFRPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKIN 136
            +N+   H  +   ++      + D+  G G  ++  +  G  V + D N +S+ +L   
Sbjct: 102 KYNTTAIHGDVVDAAKIISPCKVLDLGCGQGRNSLYLSLLGYDVTSWDHNENSIAFLNET 161

Query: 137 AKVNKVDNYVRAYNMDAREF 156
            +   ++  +     D    
Sbjct: 162 KEKENLN--ISTALYDINAA 179

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} Length = 243

 Score = 44.7 bits (106), Expect = 2e-05
 Identities = 17/84 (20%), Positives = 29/84 (34%), Gaps = 3/84 (3%)

Query: 73  YSLVYWNSRLEHEHLRIISQFRPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHY 132
           Y  +  +         ++ Q  PG+ I D+  G G   +  A     V   DL+ + +  
Sbjct: 11  YDELMQDVPYPEWVAWVLEQVEPGKRIADIGCGTGTATLLLA-DHYEVTGVDLSEEMLEI 69

Query: 133 LKINAKVNKVDNYVRAYNMDAREF 156
            +  A        V  +  D RE 
Sbjct: 70  AQEKAMETNRH--VDFWVQDMREL 91

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 Length = 246

 Score = 42.4 bits (100), Expect = 9e-05
 Identities = 12/88 (13%), Positives = 25/88 (28%), Gaps = 6/88 (6%)

Query: 73  YSLVYWNSRLEHEHLRIISQFR----PGETICDMFAGIGPFAIPAAQKGCIVFANDLNPD 128
             L+  +   +     II +        +   D+  G G        K    +A DL+ +
Sbjct: 11  DKLIRADVDYKKWSDFIIEKCVENNLVFDDYLDLACGTGNLTENLCPKFKNTWAVDLSQE 70

Query: 129 SVHYLKINAKVNKVDNYVRAYNMDAREF 156
            +   +   +   +    R    D    
Sbjct: 71  MLSEAENKFRSQGLK--PRLACQDISNL 96

>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A* Length = 385

 Score = 42.6 bits (101), Expect = 1e-04
 Identities = 25/158 (15%), Positives = 54/158 (34%), Gaps = 20/158 (12%)

Query: 14  FKDVIAKVIYDKNYPRIKTVVNKVGTIANEFRVPEFEILAGED-NMVTEVKQYGATFKLD 72
            +D I      + YP       K+     +        L G++      + + G ++ + 
Sbjct: 131 IRDEIVAAF-RQVYPNFLGAYEKI---RFKGIDNVSAHLYGQEAPEQFLILENGISYNVF 186

Query: 73  --------YSLVYWNSRLEHEHLRIISQFRPGETICDMFAGIGPFAIPAAQKGCI-VFAN 123
                     L     R       +I+    G+T+ ++F+    F++ AA  G +   + 
Sbjct: 187 LNDGLMTGIFLDQRQVRN-----ELINGSAAGKTVLNLFSYTAAFSVAAAMGGAMATTSV 241

Query: 124 DLNPDSVHYLKINAKVNKVD-NYVRAYNMDAREFIRQL 160
           DL   S      + + N +D    +   MD  ++ +  
Sbjct: 242 DLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYA 279

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* Length = 299

 Score = 42.2 bits (99), Expect = 2e-04
 Identities = 15/95 (15%), Positives = 29/95 (30%), Gaps = 3/95 (3%)

Query: 65  YGATFKLDYSLVYWNSRLEHEHLRIISQFRP-GETICDMFAGIGPFAIPAAQKGCIVFAN 123
           Y       Y  +  ++    E     ++  P    + ++ AG+G    P    G  V A 
Sbjct: 51  YDEGAADTYRDLIQDADGTSEAREFATRTGPVSGPVLELAAGMGRLTFPFLDLGWEVTAL 110

Query: 124 DLNPDSVHYLKINAKVNKVD--NYVRAYNMDAREF 156
           +L+   +   +        D  +       D   F
Sbjct: 111 ELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAF 145

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 252

 Score = 41.7 bits (98), Expect = 2e-04
 Identities = 17/102 (16%), Positives = 35/102 (34%), Gaps = 9/102 (8%)

Query: 62  VKQYGATFKLDYSLVY--WNSRLEHEHLRIISQFR-----PGETICDMFAGIGPFAIPAA 114
           + +        Y  +Y     R++ E   +   F+         + D+  G G   +  A
Sbjct: 1   MYELYTLLAEYYDTIYRRRIERVKAEIDFVEEIFKEDAKREVRRVLDLACGTGIPTLELA 60

Query: 115 QKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREF 156
           ++G  V   DL+ + +   +  AK   +   +     D  E 
Sbjct: 61  ERGYEVVGLDLHEEMLRVARRKAKERNLK--IEFLQGDVLEI 100

>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae} Length = 258

 Score = 41.7 bits (97), Expect = 2e-04
 Identities = 16/88 (18%), Positives = 31/88 (35%), Gaps = 7/88 (7%)

Query: 81  RLEHEHLRIISQFRPGETICDMFAGIGPFAIPAAQKGCIVFANDLNP-------DSVHYL 133
           +   E +          T+ D  AG+G  +   A  G  V A + +P       D +   
Sbjct: 69  KGGGELIAKAVNHTAHPTVWDATAGLGRDSFVLASLGLTVTAFEQHPAVACLLSDGIRRA 128

Query: 134 KINAKVNKVDNYVRAYNMDAREFIRQLM 161
            +N +       +  +  +A E +  L+
Sbjct: 129 LLNPETQDTAARINLHFGNAAEQMPALV 156

>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51 Length = 332

 Score = 41.3 bits (97), Expect = 3e-04
 Identities = 15/85 (17%), Positives = 32/85 (37%), Gaps = 6/85 (7%)

Query: 82  LEHEHLR-----IISQFRPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKIN 136
            E           +        + ++F   G  ++ AA  G  V   D +  ++ + K N
Sbjct: 135 PEQIVHWEWLKNAVETADRPLKVLNLFGYTGVASLVAAAAGAEVTHVDASKKAIGWAKEN 194

Query: 137 AKVNKVDN-YVRAYNMDAREFIRQL 160
             +  ++   +R    DA +FI++ 
Sbjct: 195 QVLAGLEQAPIRWICEDAMKFIQRE 219

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* Length = 199

 Score = 40.2 bits (94), Expect = 4e-04
 Identities = 15/85 (17%), Positives = 29/85 (34%), Gaps = 1/85 (1%)

Query: 72  DYSLVYWNSRLEHEHLRIISQFRPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVH 131
           +Y    +     H  +    +        D+  G G  ++  A  G  V A D N  S+ 
Sbjct: 9   NYFTDKYELTRTHSEVLEAVKVVKPGKTLDLGCGNGRNSLYLAANGYDVDAWDKNAMSIA 68

Query: 132 YLKINAKVNKVDNYVRAYNMDAREF 156
            ++    +  +DN +    +D    
Sbjct: 69  NVERIKSIENLDN-LHTRVVDLNNL 92

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} Length = 204

 Score = 39.9 bits (93), Expect = 5e-04
 Identities = 17/82 (20%), Positives = 34/82 (41%), Gaps = 7/82 (8%)

Query: 85  EHLRIIS----QFRPGETICDMFAGIGPFAIPAAQ--KGCIVFANDLNPDSVHYLKINAK 138
           + +R ++    + +    + D+ AG    +I A+       +FA + NP  + +++ N K
Sbjct: 26  QEVRAVTLSKLRLQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLK 85

Query: 139 VNKVDNYVRAYNMDAREFIRQL 160
                N V      A E +  L
Sbjct: 86  KFVARN-VTLVEAFAPEGLDDL 106

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* Length = 381

 Score = 40.3 bits (94), Expect = 6e-04
 Identities = 28/146 (19%), Positives = 52/146 (35%), Gaps = 10/146 (6%)

Query: 10  ELLPFKDVIAKVIYDKNYPRIKTVVNKVGTIANEFRVPEFEILAGEDNMVTEVKQYGATF 69
            LL +  V+ +         +     +   + + +R     IL  E         + A  
Sbjct: 154 ALLGYGVVVRR--EGPYRVALLEKEKEAPPLPSLWRAFSARILGAEYTFHHLPGVFSAG- 210

Query: 70  KLDYSLVYWNSR--LEHEHLRIISQFRPGETICDMFAGIGPFAIPAAQKGCIVFANDLNP 127
           K+D +     S   LE    R+  +   G  + D+ AG G   +P A+ G  V   + + 
Sbjct: 211 KVDPA-----SLLLLEALQERLGPEGVRGRQVLDLGAGYGALTLPLARMGAEVVGVEDDL 265

Query: 128 DSVHYLKINAKVNKVDNYVRAYNMDA 153
            SV  L+   + N +       ++D 
Sbjct: 266 ASVLSLQKGLEANALKAQALHSDVDE 291

>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46 Length = 187

 Score = 39.4 bits (93), Expect = 7e-04
 Identities = 17/74 (22%), Positives = 30/74 (40%), Gaps = 3/74 (4%)

Query: 89  IISQFRPGETICDMFAGIGPFAIPAAQKGC--IVFANDLNPDSVHYLKINAKVNKVDNYV 146
           +I  +  G    D+++G G  AI A  +G    +   + N  ++  +K N  + K     
Sbjct: 38  MIGPYFDGGMALDLYSGSGGLAIEAVSRGMDKSIC-IEKNFAALKVIKENIAITKEPEKF 96

Query: 147 RAYNMDAREFIRQL 160
               MDA   + Q 
Sbjct: 97  EVRKMDANRALEQF 110

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	380
3k6r_A	278	Putative transferase PH0793; structural genomics,	100.0
2yx1_A	336	Hypothetical protein MJ0883; methyl transferase, t	100.0
3a27_A	272	TYW2, uncharacterized protein MJ1557; wybutosine m	99.98
2frn_A	278	Hypothetical protein PH0793; structural genomics,	99.96
4dmg_A	393	Putative uncharacterized protein TTHA1493; rRNA, m	99.85
2b78_A	385	Hypothetical protein SMU.776; structure genomics,	99.84
3c0k_A	396	UPF0064 protein YCCW; PUA domain, adoMet dependent	99.84
2as0_A	396	Hypothetical protein PH1915; RNA methyltransferase	99.82
1wxx_A	382	TT1595, hypothetical protein TTHA1280; thermus the	99.8
2igt_A	332	SAM dependent methyltransferase; alpha-beta sandwi	99.74
2jjq_A	425	Uncharacterized RNA methyltransferase pyrab10780;	99.69
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	99.66
3axs_A	392	Probable N(2),N(2)-dimethylguanosine tRNA methylt	99.64
3bt7_A	369	TRNA (uracil-5-)-methyltransferase; methyluridine,	99.62
2dul_A	378	N(2),N(2)-dimethylguanosine tRNA methyltransferas;	99.56
1uwv_A	433	23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m	99.49
3p9n_A	189	Possible methyltransferase (methylase); RV2966C, a	99.35
3lpm_A	259	Putative methyltransferase; structural genomics, p	99.29
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	99.29
2r6z_A	258	UPF0341 protein in RSP 3' region; alpha-beta prote	99.28
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	99.25
2ift_A	201	Putative methylase HI0767; NESG, Y767_haein, struc	99.24
1nv8_A	284	HEMK protein; class I adoMet-dependent methyltrans	99.24
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	99.23
2esr_A	177	Methyltransferase; structural genomics, hypothetic	99.23
1ws6_A	171	Methyltransferase; structural genomics, riken stru	99.19
2fhp_A	187	Methylase, putative; alpha-beta-alpha sandwich, st	99.19
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	99.19
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	99.18
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	99.17
2fpo_A	202	Methylase YHHF; structural genomics, putative meth	99.15
3ajd_A	274	Putative methyltransferase MJ0026; tRNA, M5C, ross	99.14
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	99.13
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	99.13
3gdh_A	241	Trimethylguanosine synthase homolog; M7G, CAP, dim	99.12
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	99.11
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	99.11
2h00_A	254	Methyltransferase 10 domain containing protein; st	99.1
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	99.08
3tma_A	354	Methyltransferase; thump domain; 2.05A {Thermus th	99.06
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	99.05
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	99.05
3dxy_A	218	TRNA (guanine-N(7)-)-methyltransferase; rossmann f	99.04
3kr9_A	225	SAM-dependent methyltransferase; class I rossmann-	99.04
3gnl_A	244	Uncharacterized protein, DUF633, LMOF2365_1472; st	99.03
2b3t_A	276	Protein methyltransferase HEMK; translation termin	99.03
1ixk_A	315	Methyltransferase; open beta sheet; 1.90A {Pyrococ	99.03
2fca_A	213	TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac	99.03
3tm4_A	373	TRNA (guanine N2-)-methyltransferase TRM14; rossma	99.02
3lec_A	230	NADB-rossmann superfamily protein; PSI, MCSG, stru	99.02
1yzh_A	214	TRNA (guanine-N(7)-)-methyltransferase; alpha-beta	99.02
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	99.01
3m4x_A	456	NOL1/NOP2/SUN family protein; mtase domain, PUA do	99.01
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	99.01
3k0b_A	393	Predicted N6-adenine-specific DNA methylase; methy	99.01
1wy7_A	207	Hypothetical protein PH1948; seven-stranded beta s	99.01
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	99.0
3gru_A	295	Dimethyladenosine transferase; rossman fold, ribos	99.0
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	98.99
3ldu_A	385	Putative methylase; structural genomics, PSI-2, pr	98.98
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	98.98
4dzr_A	215	Protein-(glutamine-N5) methyltransferase, release	98.97
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	98.97
2vdv_E	246	TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl	98.95
3ll7_A	410	Putative methyltransferase; methytransferase, stru	98.95
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	98.95
3ldg_A	384	Putative uncharacterized protein SMU.472; YPSC, me	98.94
2frx_A	479	Hypothetical protein YEBU; rossmann-type S-adenosy	98.94
3m6w_A	464	RRNA methylase; rRNA methyltransferase, 5-methylcy	98.94
1xdz_A	240	Methyltransferase GIDB; MCSG, protein structure in	98.94
3g89_A	249	Ribosomal RNA small subunit methyltransferase G; 1	98.92
3q87_B	170	N6 adenine specific DNA methylase; SAM-methyltrans	98.91
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	98.9
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	98.9
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	98.89
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	98.88
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	98.88
3fut_A	271	Dimethyladenosine transferase; methyltransferase,	98.88
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	98.87
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	98.87
1zq9_A	285	Probable dimethyladenosine transferase; SGC, struc	98.85
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	98.85
4hc4_A	376	Protein arginine N-methyltransferase 6; HRMT1L6, S	98.85
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	98.85
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	98.84
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	98.84
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	98.83
1g8a_A	227	Fibrillarin-like PRE-rRNA processing protein; rRNA	98.83
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	98.81
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	98.79
2ipx_A	233	RRNA 2'-O-methyltransferase fibrillarin; FBL, stru	98.79
3ckk_A	235	TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-	98.79
2qm3_A	373	Predicted methyltransferase; putative methyltransf	98.79
2h1r_A	299	Dimethyladenosine transferase, putative; SGC toron	98.79
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	98.78
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	98.78
1m6y_A	301	S-adenosyl-methyltransferase MRAW; SAM-dependent m	98.76
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	98.76
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	98.76
2oyr_A	258	UPF0341 protein YHIQ; alpha-beta protein, structur	98.76
4gek_A	261	TRNA (CMO5U34)-methyltransferase; structural genom	98.75
2yxl_A	450	PH0851 protein, 450AA long hypothetical FMU protei	98.73
1ne2_A	200	Hypothetical protein TA1320; structural genomics,	98.72
1sqg_A	429	SUN protein, FMU protein; rossmann-fold, mixed bet	98.72
1o9g_A	250	RRNA methyltransferase; antibiotic resistance, Se-	98.71
2pt6_A	321	Spermidine synthase; transferase, structural genom	98.71
2b9e_A	309	NOL1/NOP2/SUN domain family, member 5 isoform 2; m	98.71
1nt2_A	210	Fibrillarin-like PRE-rRNA processing protein; adeM	98.7
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	98.7
2b25_A	336	Hypothetical protein; structural genomics, methyl	98.69
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	98.69
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	98.69
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	98.68
3tqs_A	255	Ribosomal RNA small subunit methyltransferase A; p	98.67
1jsx_A	207	Glucose-inhibited division protein B; methyltransf	98.67
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	98.66
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	98.65
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	98.64
3fzg_A	200	16S rRNA methylase; methyltransferase, plasmid, tr	98.63
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	98.63
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	98.62
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	98.62
2o07_A	304	Spermidine synthase; structural genomics, structur	98.62
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	98.61
4htf_A	285	S-adenosylmethionine-dependent methyltransferase;	98.61
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	98.61
1inl_A	296	Spermidine synthase; beta-barrel, rossman fold, st	98.61
3f4k_A	257	Putative methyltransferase; structural genomics, P	98.6
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	98.6
3lcc_A	235	Putative methyl chloride transferase; halide methy	98.59
1mjf_A	281	Spermidine synthase; spermidine synthetase, struct	98.59
3uzu_A	279	Ribosomal RNA small subunit methyltransferase A; s	98.59
1qam_A	244	ERMC' methyltransferase; rRNA methyltransferase ER	98.58
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	98.58
2okc_A	445	Type I restriction enzyme stysji M protein; NP_813	98.57
1qyr_A	252	KSGA, high level kasugamycin resistance protein, S	98.56
1uir_A	314	Polyamine aminopropyltransferase; spermidien synth	98.55
3r0q_C	376	Probable protein arginine N-methyltransferase 4.2;	98.55
3ocj_A	305	Putative exported protein; structural genomics, PS	98.55
2fyt_A	340	Protein arginine N-methyltransferase 3; structural	98.53
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	98.53
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	98.52
3p2e_A	225	16S rRNA methylase; methyltransferase, transferase	98.52
3q7e_A	349	Protein arginine N-methyltransferase 1; HET: SAH;	98.52
1xxl_A	239	YCGJ protein; structural genomics, protein structu	98.52
1xj5_A	334	Spermidine synthase 1; structural genomics, protei	98.51
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	98.49
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	98.49
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	98.49
2ar0_A	541	M.ecoki, type I restriction enzyme ecoki M protein	98.48
2qfm_A	364	Spermine synthase; spermidine aminopropyltransfera	98.48
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	98.47
1g6q_1	328	HnRNP arginine N-methyltransferase; SAM-binding do	98.47
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	98.47
2pjd_A	343	Ribosomal RNA small subunit methyltransferase C; g	98.46
3bwc_A	304	Spermidine synthase; SAM, SGPP, structura genomics	98.46
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	98.46
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	98.46
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	98.46
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	98.46
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	98.46
2f8l_A	344	Hypothetical protein LMO1582; structural genomics,	98.45
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	98.45
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	98.45
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	98.45
3orh_A	236	Guanidinoacetate N-methyltransferase; structura ge	98.45
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	98.44
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	98.44
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	98.44
3bzb_A	281	Uncharacterized protein; RED ALGA, protein structu	98.44
3adn_A	294	Spermidine synthase; aminopropyltransferase, polya	98.44
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	98.44
3ftd_A	249	Dimethyladenosine transferase; KSGA, rossmann-like	98.43
2y1w_A	348	Histone-arginine methyltransferase CARM1; histone	98.43
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	98.43
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	98.42
1zx0_A	236	Guanidinoacetate N-methyltransferase; structural g	98.42
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	98.41
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	98.41
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	98.41
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	98.41
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	98.4
3lkd_A	542	Type I restriction-modification system methyltrans	98.39
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	98.39
3i9f_A	170	Putative type 11 methyltransferase; structural gen	98.38
3b3j_A	480	Histone-arginine methyltransferase CARM1; protein	98.38
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	98.36
2i7c_A	283	Spermidine synthase; transferase, structural genom	98.35
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	98.35
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	98.33
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	98.32
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	98.32
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	98.31
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	98.3
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	98.3
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	98.3
3mq2_A	218	16S rRNA methyltransferase; methyltranferase, ribo	98.28
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	98.27
3iv6_A	261	Putative Zn-dependent alcohol dehydrogenase; alpha	98.27
2p7i_A	250	Hypothetical protein; putative methyltransferase,	98.26
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	98.26
3khk_A	544	Type I restriction-modification system methylation	98.25
1yub_A	245	Ermam, rRNA methyltransferase; MLS antibiotics; NM	98.25
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	98.24
2ih2_A	421	Modification methylase TAQI; DNA, DNA methyltransf	98.23
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	98.23
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	98.23
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	98.21
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	98.21
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	98.2
1u2z_A	433	Histone-lysine N-methyltransferase, H3 lysine-79 s	98.19
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	98.19
1ej0_A	180	FTSJ; methyltransferase, adoMet, adenosyl methioni	98.18
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	98.17
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	98.16
3id6_C	232	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	98.15
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	98.13
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	98.12
1wg8_A	285	Predicted S-adenosylmethionine-dependent methyltra	98.11
2zig_A	297	TTHA0409, putative modification methylase; methylt	98.1
3lcv_B	281	Sisomicin-gentamicin resistance methylase SGM; ant	98.09
2oo3_A	283	Protein involved in catabolism of external DNA; st	98.09
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	98.08
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	98.06
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	98.06
3frh_A	253	16S rRNA methylase; methyltransferase domain, heli	98.05
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	98.04
3ege_A	261	Putative methyltransferase from antibiotic biosyn	98.04
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	98.03
3dou_A	191	Ribosomal RNA large subunit methyltransferase J; c	98.01
1qzz_A	374	RDMB, aclacinomycin-10-hydroxylase; anthracycline,	97.99
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	97.99
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	97.98
2cmg_A	262	Spermidine synthase; transferase, putrescine amino	97.98
4gqb_A	637	Protein arginine N-methyltransferase 5; TIM barrel	97.97
4hg2_A	257	Methyltransferase type 11; structural genomics, PS	97.96
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	97.96
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	97.96
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	97.94
2r3s_A	335	Uncharacterized protein; methyltransferase domain,	97.91
3i53_A	332	O-methyltransferase; CO-complex, rossmann-like fol	97.91
3bgv_A	313	MRNA CAP guanine-N7 methyltransferase; alternative	97.91
2bm8_A	236	Cephalosporin hydroxylase CMCI; cephamycin biosynt	97.91
4fzv_A	359	Putative methyltransferase NSUN4; mterf fold, meth	97.9
3opn_A	232	Putative hemolysin; structural genomics, PSI-2, pr	97.89
2i62_A	265	Nicotinamide N-methyltransferase; structural genom	97.88
1tw3_A	360	COMT, carminomycin 4-O-methyltransferase; anthracy	97.88
3ua3_A	745	Protein arginine N-methyltransferase 5; TIM-barrel	97.86
3ufb_A	530	Type I restriction-modification system methyltran	97.84
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	97.84
3s1s_A	878	Restriction endonuclease bpusi; PD--(D/E)XK cataly	97.83
2a14_A	263	Indolethylamine N-methyltransferase; SGC,INMT, str	97.81
2wa2_A	276	Non-structural protein 5; transferase, S-adenosyl-	97.78
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	97.74
3gwz_A	369	MMCR; methyltransferase, mitomycin, S-adenosyl met	97.73
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	97.73
3hp7_A	291	Hemolysin, putative; structural genomics, APC64019	97.73
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	97.72
2oxt_A	265	Nucleoside-2'-O-methyltransferase; flavivirus, vir	97.7
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	97.7
3mcz_A	352	O-methyltransferase; adomet_mtases, S-adenosylmeth	97.68
2plw_A	201	Ribosomal RNA methyltransferase, putative; malaria	97.65
3cc8_A	230	Putative methyltransferase; structural genomics, j	97.64
2qe6_A	274	Uncharacterized protein TFU_2867; putative methylt	97.61
2ip2_A	334	Probable phenazine-specific methyltransferase; pyo	97.56
4e2x_A	416	TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s	97.55
2g72_A	289	Phenylethanolamine N-methyltransferase; HET: SAM F	97.43
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	97.42
2p41_A	305	Type II methyltransferase; vizier, viral enzymes i	97.4
2zfu_A	215	Nucleomethylin, cerebral protein 1; nucleolar prot	97.37
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	97.29
1boo_A	323	Protein (N-4 cytosine-specific methyltransferase P	97.26
2py6_A	409	Methyltransferase FKBM; YP_546752.1, structural ge	97.21
3cvo_A	202	Methyltransferase-like protein of unknown functio;	97.17
3tka_A	347	Ribosomal RNA small subunit methyltransferase H; H	97.16
1af7_A	274	Chemotaxis receptor methyltransferase CHER; chemot	97.09
3g7u_A	376	Cytosine-specific methyltransferase; DNA-binding,	97.02
1i4w_A	353	Mitochondrial replication protein MTF1; mitochondr	97.0
3giw_A	277	Protein of unknown function DUF574; rossmann-fold	96.99
2xyq_A	290	Putative 2'-O-methyl transferase; transferase-vira	96.98
2qy6_A	257	UPF0209 protein YFCK; structural genomics, unknown	96.96
1g55_A	343	DNA cytosine methyltransferase DNMT2; human DNA me	96.95
1eg2_A	319	Modification methylase RSRI; rossmann fold, exocyc	96.82
2k4m_A	153	TR8_protein, UPF0146 protein MTH_1000; alpha+beta,	96.82
3lst_A	348	CALO1 methyltransferase; calicheamicin, enediyne,	96.71
4a6d_A	353	Hydroxyindole O-methyltransferase; melatonin, circ	96.7
2c7p_A	327	Modification methylase HHAI; DNA methyltransferase	96.56
1fp2_A	352	Isoflavone O-methyltransferase; protein-product co	96.51
3reo_A	368	(ISO)eugenol O-methyltransferase; directed evoluti	96.46
3ubt_Y	331	Modification methylase HAEIII; protein-DNA complex	96.39
2qrv_A	295	DNA (cytosine-5)-methyltransferase 3A; DNA methylt	96.34
1fp1_D	372	Isoliquiritigenin 2'-O-methyltransferase; protein-	96.21
3p9c_A	364	Caffeic acid O-methyltransferase; S-adenosylmethio	96.19
3o4f_A	294	Spermidine synthase; aminopropyltransferase, polya	96.19
3me5_A	482	Cytosine-specific methyltransferase; structural ge	96.04
3c6k_A	381	Spermine synthase; spermidine aminopropyltransfera	95.74
3qv2_A	327	5-cytosine DNA methyltransferase; DNMT2, ehmeth; H	95.74
1zg3_A	358	Isoflavanone 4'-O-methyltransferase; rossman fold,	95.65
3sso_A	419	Methyltransferase; macrolide, natural product, ros	95.63
4ft4_B	784	DNA (cytosine-5)-methyltransferase 1; chromodomain	95.54
4h0n_A	333	DNMT2; SAH binding, transferase; HET: SAH; 2.71A {	95.39
4auk_A	375	Ribosomal RNA large subunit methyltransferase M; Y	95.24
3swr_A	1002	DNA (cytosine-5)-methyltransferase 1; epigenetics,	94.67
2wk1_A	282	NOVP; transferase, O-methyltransferase, novobiocin	94.02
3av4_A	1330	DNA (cytosine-5)-methyltransferase 1; CXXC-type zi	93.65
4dkj_A	403	Cytosine-specific methyltransferase; CG-specificit	92.87
3lkz_A	321	Non-structural protein 5; flavivirus, methyltransf	91.35
3p8z_A	267	Mtase, non-structural protein 5; methyltransferase	91.17
3gcz_A	282	Polyprotein; flavivirus, RNA capping, methyltransf	90.57
3evf_A	277	RNA-directed RNA polymerase NS5; NS5 methyltransfe	90.05
2ld4_A	176	Anamorsin; methyltransferase-like fold, alpha/beta	89.44
3eld_A	300	Methyltransferase; flavivirus, RNA capping, guanyl	86.77
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	85.92
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	84.44
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	82.38
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	82.09
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	81.68
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	80.04

>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*

Probab=100.00  E-value=2e-46  Score=361.99  Aligned_cols=239  Identities=28%  Similarity=0.410  Sum_probs=205.0

Q ss_pred             CEEEEEcCCCCcccHHHHHHHHHhccCCCeeEEEEecCCccccccccceEEEecCCccEEEEEeCCeEEEEccCceeecC
Q 046527            1 HIAHLNIHDELLPFKDVIAKVIYDKNYPRIKTVVNKVGTIANEFRVPEFEILAGEDNMVTEVKQYGATFKLDYSLVYWNS   80 (380)
Q Consensus         1 hIahinl~~~~lp~k~~I~~aLldk~~p~iktVv~k~~~i~~~~r~~~~elLaG~~~~~~~v~E~G~~F~id~~~ff~n~   80 (380)
                      ||||+++++++++|++.|+++|++ . +++++|+++ +.+.+++|.+++++|+|++ .++.++|+|+.|.+|+...||++
T Consensus        35 di~il~~~~~~~~~~~~i~~~l~~-~-~~vk~V~~k-~~i~g~~R~~~~e~L~G~~-~~~~~~E~G~~~~~D~~k~~f~~  110 (278)
T 3k6r_A           35 DVLLLPLRPELEPYKHRIAEVYAE-V-LGVKTVLRK-GHIHGETRKPDYELLYGSD-TVTVHVENGIKYKLDVAKIMFSP  110 (278)
T ss_dssp             TEEEECC-CTTGGGHHHHHHHHHH-H-HTCSEEEEC-C----------CEEEECSC-CEEEEEETTEEEEEETTTSCCCG
T ss_pred             CEEEEeCChhHhHHHHHHHHHHHh-c-cCCeEEEEe-CCcCCccccccceEEecCC-cEEEEEECCEEEEEeccceEEcC
Confidence            899999999999999999999999 4 789999988 5578999999999999987 56788999999999999999999


Q ss_pred             hHHHHHHHHHhccCCCCeEEEecCCcchhHHHHhhcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHHHHH
Q 046527           81 RLEHEHLRIISQFRPGETICDMFAGIGPFAIPAAQKGC-IVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFIRQ  159 (380)
Q Consensus        81 rl~tE~~r~i~~i~~g~~VLDlfcGvG~fsl~aA~~g~-~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~l~~  159 (380)
                      ++.+|+.++...+++|++|||+|||+|+|++++|++|+ +|+|+|+||.|++++++|+++|++.++++++++|+++++. 
T Consensus       111 ~~~~er~ri~~~~~~g~~VlD~~aG~G~~~i~~a~~g~~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~~~~-  189 (278)
T 3k6r_A          111 ANVKERVRMAKVAKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG-  189 (278)
T ss_dssp             GGHHHHHHHHHHCCTTCEEEETTCTTTTTTHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC-
T ss_pred             CcHHHHHHHHHhcCCCCEEEEecCcCcHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcHHHhcc-
Confidence            99999999999999999999999999999999999875 9999999999999999999999999999999999865310 


Q ss_pred             HhcCCCCCCCCcchhhhhhccCCCCcccccccccccccccccccccccccCCCCccccccccccCcccccccCCCCCCcc
Q 046527          160 LMTAPAGEINSESDVFNLKACGNSGIQANKKTGIENVGLDVQDKEVAGNITSNSEGLQNYCRNADASVTATKRPSDGCLE  239 (380)
Q Consensus       160 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (380)
                                                                                                      
T Consensus       190 --------------------------------------------------------------------------------  189 (278)
T 3k6r_A          190 --------------------------------------------------------------------------------  189 (278)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cCCCCCCCCCCCCCccccccCCCCCCCCCCceeeEEEecCCchHHHHHHHHHHhhhhcccCCCCcEEEEEecccCCCch-
Q 046527          240 ENGTTNSASGRKGKTSKRMKGSELPNTKTWEHVDHIIMNLPASALKFLDAFRGLIQRQYWKGSLPWIHCYCFIRANETE-  318 (380)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~vmNLP~~A~eFLd~f~gl~~~~~~~~~~p~iH~Y~F~~~~~~~-  318 (380)
                                         .          ..||+||||+|.++.+||+.+..+++.+      ++||+|+|.++++.. 
T Consensus       190 -------------------~----------~~~D~Vi~~~p~~~~~~l~~a~~~lk~g------G~ih~~~~~~e~~~~~  234 (278)
T 3k6r_A          190 -------------------E----------NIADRILMGYVVRTHEFIPKALSIAKDG------AIIHYHNTVPEKLMPR  234 (278)
T ss_dssp             -------------------C----------SCEEEEEECCCSSGGGGHHHHHHHEEEE------EEEEEEEEEEGGGTTT
T ss_pred             -------------------c----------cCCCEEEECCCCcHHHHHHHHHHHcCCC------CEEEEEeeecccccch
Confidence                               0          0289999999999999999999888766      799999999876532 


Q ss_pred             --HHHHHHHHHHhcccCCCCeEEEeccCCCCCceEEEEEEech
Q 046527          319 --ELIISEAESALNACIQDPIFHKVRNVAPNKAMFCLSFRLPE  359 (380)
Q Consensus       319 --~~~~~~~~~~lg~~~~~~~~~~VR~VaP~k~m~c~sF~lp~  359 (380)
                        .+.++++.+..|..++...++.||+|||+++|+|++|+++.
T Consensus       235 ~~~e~i~~~~~~~g~~v~~~~~~~Vk~yaP~~~hvv~D~~i~k  277 (278)
T 3k6r_A          235 EPFETFKRITKEYGYDVEKLNELKIKRYAPGVWHVVLDLRVFK  277 (278)
T ss_dssp             TTHHHHHHHHHHTTCEEEEEEEEEEEEETTTEEEEEEEEEEEC
T ss_pred             hHHHHHHHHHHHcCCcEEEEEEEEEEeECcCccEEEEEEEEeC
Confidence              34566777888888777788999999999999999999975

>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*

Probab=100.00  E-value=1.9e-32  Score=269.33  Aligned_cols=233  Identities=30%  Similarity=0.477  Sum_probs=196.1

Q ss_pred             CEEEEEcCCCCccc-HHHHHHHHHhccCCCeeEEEEecCCccccccccceEEEecCCccEEEEEeCCeEEEEccCceeec
Q 046527            1 HIAHLNIHDELLPF-KDVIAKVIYDKNYPRIKTVVNKVGTIANEFRVPEFEILAGEDNMVTEVKQYGATFKLDYSLVYWN   79 (380)
Q Consensus         1 hIahinl~~~~lp~-k~~I~~aLldk~~p~iktVv~k~~~i~~~~r~~~~elLaG~~~~~~~v~E~G~~F~id~~~ff~n   79 (380)
                      ||+|+++.+..+++ ++.|+++|+++ +|. ++|+.+.+.+.+.++.+.+++++|+....+.++|+|++|.+++..+||+
T Consensus       102 ~~~vv~~~~~~~~~~~~~i~~~l~~~-~~~-~~v~~~~~~~~g~~r~~~~~~l~G~~~~~~~~~e~g~~f~~d~~~~~~~  179 (336)
T 2yx1_A          102 DLVILQISDEVDEKIRKEIGELAYKL-IPC-KGVFRRKSEVKGEFRVRELEHLAGENRTLTIHKENGYRLWVDIAKVYFS  179 (336)
T ss_dssp             TEEEECBCSCSCHHHHHHHHHHHHHH-SCC-SEEEEEC-------CCCCEEEEEECCCCEEEEEETTEEEEEETTTSCCC
T ss_pred             CEEEEecCcchhhhHHHHHHHHHHHH-CCC-cEEEEcCCCCCCcccccceEEEeCCCCcEEEEEECCEEEEEehHHhccC
Confidence            68999999998888 89999999995 487 9999997667788998899999999877888999999999999999999


Q ss_pred             ChHHHHHHHHHhccCCCCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHHHHH
Q 046527           80 SRLEHEHLRIISQFRPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFIRQ  159 (380)
Q Consensus        80 ~rl~tE~~r~i~~i~~g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~l~~  159 (380)
                      ++..+++++++..+.+|++|||+|||+|.|++. |+.+++|+|+|+|+.++++|++|++.|++.++++++++|+.+++  
T Consensus       180 ~~~~~er~~i~~~~~~~~~VLDlg~G~G~~~l~-a~~~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~--  256 (336)
T 2yx1_A          180 PRLGGERARIMKKVSLNDVVVDMFAGVGPFSIA-CKNAKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREVD--  256 (336)
T ss_dssp             GGGHHHHHHHHHHCCTTCEEEETTCTTSHHHHH-TTTSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCC--
T ss_pred             CccHHHHHHHHHhcCCCCEEEEccCccCHHHHh-ccCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHhc--
Confidence            999999998777778999999999999999999 88666999999999999999999999999767999999986542  


Q ss_pred             HhcCCCCCCCCcchhhhhhccCCCCcccccccccccccccccccccccccCCCCccccccccccCcccccccCCCCCCcc
Q 046527          160 LMTAPAGEINSESDVFNLKACGNSGIQANKKTGIENVGLDVQDKEVAGNITSNSEGLQNYCRNADASVTATKRPSDGCLE  239 (380)
Q Consensus       160 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (380)
                        .                                                                             
T Consensus       257 --~-----------------------------------------------------------------------------  257 (336)
T 2yx1_A          257 --V-----------------------------------------------------------------------------  257 (336)
T ss_dssp             --C-----------------------------------------------------------------------------
T ss_pred             --C-----------------------------------------------------------------------------
Confidence              0                                                                             


Q ss_pred             cCCCCCCCCCCCCCccccccCCCCCCCCCCceeeEEEecCCchHHHHHHHHHHhhhhcccCCCCcEEEEEecccCCCchH
Q 046527          240 ENGTTNSASGRKGKTSKRMKGSELPNTKTWEHVDHIIMNLPASALKFLDAFRGLIQRQYWKGSLPWIHCYCFIRANETEE  319 (380)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~vmNLP~~A~eFLd~f~gl~~~~~~~~~~p~iH~Y~F~~~~~~~~  319 (380)
                                                     .||+|+||+|..+.+|++.+..+++.+      +++|+|+|+..   .+
T Consensus       258 -------------------------------~fD~Vi~dpP~~~~~~l~~~~~~L~~g------G~l~~~~~~~~---~~  297 (336)
T 2yx1_A          258 -------------------------------KGNRVIMNLPKFAHKFIDKALDIVEEG------GVIHYYTIGKD---FD  297 (336)
T ss_dssp             -------------------------------CEEEEEECCTTTGGGGHHHHHHHEEEE------EEEEEEEEESS---SH
T ss_pred             -------------------------------CCcEEEECCcHhHHHHHHHHHHHcCCC------CEEEEEEeecC---ch
Confidence                                           189999999999999999999988765      79999999987   23


Q ss_pred             HHHHHHHHHhcccCCCCeEEEeccCCCCCceEEEEEEech
Q 046527          320 LIISEAESALNACIQDPIFHKVRNVAPNKAMFCLSFRLPE  359 (380)
Q Consensus       320 ~~~~~~~~~lg~~~~~~~~~~VR~VaP~k~m~c~sF~lp~  359 (380)
                      .+.+...+..+.  +...++.||+++|+++|||++|+++.
T Consensus       298 ~~~~~l~~~~~~--~i~~~~~v~~~~p~~~~~~~~~~l~~  335 (336)
T 2yx1_A          298 KAIKLFEKKCDC--EVLEKRIVKSYAPREYILALDFKINK  335 (336)
T ss_dssp             HHHHHHHHHSEE--EEEEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             HHHHHHHHhcCC--cEEEEEEEeccCCCCCEEEEEEEEec
Confidence            333333333243  33468999999999999999999974

>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}

Probab=99.98  E-value=6e-32  Score=258.12  Aligned_cols=234  Identities=26%  Similarity=0.348  Sum_probs=178.7

Q ss_pred             CEEEEEcCCCCcccHHHHHHHHHhccCCCeeEEEEecCCccccccccceEEEecCCccEEEEEeCCeEEEEccCceeecC
Q 046527            1 HIAHLNIHDELLPFKDVIAKVIYDKNYPRIKTVVNKVGTIANEFRVPEFEILAGEDNMVTEVKQYGATFKLDYSLVYWNS   80 (380)
Q Consensus         1 hIahinl~~~~lp~k~~I~~aLldk~~p~iktVv~k~~~i~~~~r~~~~elLaG~~~~~~~v~E~G~~F~id~~~ff~n~   80 (380)
                      ||||+|+++...    .| ++|++ . |.+++|+.+.+...+.++..++++|+|++ ..+.++|+|++|.+++..|||++
T Consensus        33 ~~~v~~~~~~~~----~i-~~l~~-~-~~~~~v~~~~~~~~~~~~~~~~~~l~G~~-~~~~~~e~g~~f~~~~~~~f~~~  104 (272)
T 3a27_A           33 DVVIVKKELSED----EI-REIVK-R-TKCKAILLYTTQITGEFRTPHVKILYGKE-TETIHKEYGCLFKLDVAKIMWSQ  104 (272)
T ss_dssp             TEEEC------------------------CCSEEEEC----------CCEEEECSC-CEEEEEETTEEEEEETTTSCCCG
T ss_pred             CEEEEeCCchHH----HH-HHHHh-C-CCceEEEEcCCCCCCcccccceEEEeCCC-cEEEEEECCEEEEEechhEEECC
Confidence            799999998763    78 99988 4 99999999987667888888999999998 56668899999999999999999


Q ss_pred             hHHHHHHHHHhccCCCCeEEEecCCcchhHHHHhhcCC--EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHHHH
Q 046527           81 RLEHEHLRIISQFRPGETICDMFAGIGPFAIPAAQKGC--IVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFIR  158 (380)
Q Consensus        81 rl~tE~~r~i~~i~~g~~VLDlfcGvG~fsl~aA~~g~--~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~l~  158 (380)
                      +..+++++.+..+.++++|||+|||+|.|++.+|+.+.  +|+|+|+|+.+++.|++|++.|++.+ +.++++|+.++ .
T Consensus       105 ~~~~e~~~~~~~~~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n~l~~-~~~~~~d~~~~-~  182 (272)
T 3a27_A          105 GNIEERKRMAFISNENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKLNN-VIPILADNRDV-E  182 (272)
T ss_dssp             GGHHHHHHHHTSCCTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHTTCSS-EEEEESCGGGC-C
T ss_pred             CchHHHHHHHHhcCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCC-EEEEECChHHc-C
Confidence            99999998888889999999999999999999998843  99999999999999999999999987 88999998643 1


Q ss_pred             HHhcCCCCCCCCcchhhhhhccCCCCcccccccccccccccccccccccccCCCCccccccccccCcccccccCCCCCCc
Q 046527          159 QLMTAPAGEINSESDVFNLKACGNSGIQANKKTGIENVGLDVQDKEVAGNITSNSEGLQNYCRNADASVTATKRPSDGCL  238 (380)
Q Consensus       159 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (380)
                      . .                                                                             
T Consensus       183 ~-~-----------------------------------------------------------------------------  184 (272)
T 3a27_A          183 L-K-----------------------------------------------------------------------------  184 (272)
T ss_dssp             C-T-----------------------------------------------------------------------------
T ss_pred             c-c-----------------------------------------------------------------------------
Confidence            0 0                                                                             


Q ss_pred             ccCCCCCCCCCCCCCccccccCCCCCCCCCCceeeEEEecCCchHHHHHHHHHHhhhhcccCCCCcEEEEEecccCCC--
Q 046527          239 EENGTTNSASGRKGKTSKRMKGSELPNTKTWEHVDHIIMNLPASALKFLDAFRGLIQRQYWKGSLPWIHCYCFIRANE--  316 (380)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~vmNLP~~A~eFLd~f~gl~~~~~~~~~~p~iH~Y~F~~~~~--  316 (380)
                                                     ..||.|+||+|....+||.....+++.+      ++++++|+...++  
T Consensus       185 -------------------------------~~~D~Vi~d~p~~~~~~l~~~~~~Lkpg------G~l~~s~~~~~~~~~  227 (272)
T 3a27_A          185 -------------------------------DVADRVIMGYVHKTHKFLDKTFEFLKDR------GVIHYHETVAEKIMY  227 (272)
T ss_dssp             -------------------------------TCEEEEEECCCSSGGGGHHHHHHHEEEE------EEEEEEEEEEGGGTT
T ss_pred             -------------------------------CCceEEEECCcccHHHHHHHHHHHcCCC------CEEEEEEcCcccccc
Confidence                                           0289999999998899999988877755      6899999998654  


Q ss_pred             -chHHHHHHHHHHhcccCCCCeEEEeccCCCCCceEEEEEEech
Q 046527          317 -TEELIISEAESALNACIQDPIFHKVRNVAPNKAMFCLSFRLPE  359 (380)
Q Consensus       317 -~~~~~~~~~~~~lg~~~~~~~~~~VR~VaP~k~m~c~sF~lp~  359 (380)
                       +...+++...+.++..++...++.||+++|+++|||++|+++.
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~p~~~~~~~d~~~~~  271 (272)
T 3a27_A          228 ERPIERLKFYAEKNGYKLIDYEVRKIKKYAPGVWHVVVDAKFER  271 (272)
T ss_dssp             THHHHHHHHHHHHTTEEEEEEEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             ccHHHHHHHHHHHhCCeeEEeEEEEEEEECCCCCEEEEEEEEec
Confidence             3335566677777777776778999999999999999999864

>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*

Probab=99.96  E-value=1.5e-29  Score=242.02  Aligned_cols=237  Identities=29%  Similarity=0.433  Sum_probs=191.3

Q ss_pred             CEEEEEcCCCCcccHHHHHHHHHhccCCCeeEEEEecCCccccccccceEEEecCCccEEEEEeCCeEEEEccCceeecC
Q 046527            1 HIAHLNIHDELLPFKDVIAKVIYDKNYPRIKTVVNKVGTIANEFRVPEFEILAGEDNMVTEVKQYGATFKLDYSLVYWNS   80 (380)
Q Consensus         1 hIahinl~~~~lp~k~~I~~aLldk~~p~iktVv~k~~~i~~~~r~~~~elLaG~~~~~~~v~E~G~~F~id~~~ff~n~   80 (380)
                      |++|++++..++++++.|+++|.+. + .+++|+.+ +...++++..+.++|+|++ ..+.++|+|++|.+|+..+||.+
T Consensus        35 ~~~vv~~~~~~~~~~~~i~~~l~~~-~-~~~~i~~~-~~~~~~~~~~~~~~l~G~~-~~~~~~e~g~~f~~d~~~~~f~~  110 (278)
T 2frn_A           35 DVLLLPLRPELEPYKHRIAEVYAEV-L-GVKTVLRK-GHIHGETRKPDYELLYGSD-TVTVHVENGIKYKLDVAKIMFSP  110 (278)
T ss_dssp             TEEECC--CCSCSCCTHHHHHHHHH-H-TCSEEEEC-C----------CEEEECSC-CEEEEEETTEEEEEETTTSCCCG
T ss_pred             CEEEEeCChhHHHHHHHHHHHHHHh-c-CCCEEEEe-CCccCCccccceEEEECCC-CEEEEEECCEEEEEEccceeEcC
Confidence            6899999888999999999999994 3 79999999 4567788888999999985 56677899999999999988888


Q ss_pred             hHHHHHHHHHhccCCCCeEEEecCCcchhHHHHhhcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHHHHH
Q 046527           81 RLEHEHLRIISQFRPGETICDMFAGIGPFAIPAAQKGC-IVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFIRQ  159 (380)
Q Consensus        81 rl~tE~~r~i~~i~~g~~VLDlfcGvG~fsl~aA~~g~-~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~l~~  159 (380)
                      +...++.++...+.+|++|||+|||+|.+++.+|+.++ +|+|+|+|+.+++.|++|++.|++.++++++++|+.++.. 
T Consensus       111 ~~~~~~~~l~~~~~~~~~VLDlgcG~G~~~~~la~~~~~~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~-  189 (278)
T 2frn_A          111 ANVKERVRMAKVAKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG-  189 (278)
T ss_dssp             GGHHHHHHHHHHCCTTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC-
T ss_pred             CcHHHHHHHHHhCCCCCEEEEecccCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhcc-
Confidence            87778877777788899999999999999999999887 6999999999999999999999999889999998754310 


Q ss_pred             HhcCCCCCCCCcchhhhhhccCCCCcccccccccccccccccccccccccCCCCccccccccccCcccccccCCCCCCcc
Q 046527          160 LMTAPAGEINSESDVFNLKACGNSGIQANKKTGIENVGLDVQDKEVAGNITSNSEGLQNYCRNADASVTATKRPSDGCLE  239 (380)
Q Consensus       160 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (380)
                        .                                                                             
T Consensus       190 --~-----------------------------------------------------------------------------  190 (278)
T 2frn_A          190 --E-----------------------------------------------------------------------------  190 (278)
T ss_dssp             --C-----------------------------------------------------------------------------
T ss_pred             --c-----------------------------------------------------------------------------
Confidence              0                                                                             


Q ss_pred             cCCCCCCCCCCCCCccccccCCCCCCCCCCceeeEEEecCCchHHHHHHHHHHhhhhcccCCCCcEEEEEecccCC----
Q 046527          240 ENGTTNSASGRKGKTSKRMKGSELPNTKTWEHVDHIIMNLPASALKFLDAFRGLIQRQYWKGSLPWIHCYCFIRAN----  315 (380)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~vmNLP~~A~eFLd~f~gl~~~~~~~~~~p~iH~Y~F~~~~----  315 (380)
                                                    ..||.|+||+|....+||+....+++.+      +++++|+++...    
T Consensus       191 ------------------------------~~fD~Vi~~~p~~~~~~l~~~~~~Lkpg------G~l~~~~~~~~~~~~~  234 (278)
T 2frn_A          191 ------------------------------NIADRILMGYVVRTHEFIPKALSIAKDG------AIIHYHNTVPEKLMPR  234 (278)
T ss_dssp             ------------------------------SCEEEEEECCCSSGGGGHHHHHHHEEEE------EEEEEEEEEEGGGTTT
T ss_pred             ------------------------------CCccEEEECCchhHHHHHHHHHHHCCCC------eEEEEEEeeccccccc
Confidence                                          1299999999999999999888888766      789999998642    


Q ss_pred             CchHHHHHHHHHHhcccCCCCeEEEeccCCCCCceEEEEEEec
Q 046527          316 ETEELIISEAESALNACIQDPIFHKVRNVAPNKAMFCLSFRLP  358 (380)
Q Consensus       316 ~~~~~~~~~~~~~lg~~~~~~~~~~VR~VaP~k~m~c~sF~lp  358 (380)
                      +..+. +.++.+..|+.+.....+.|++++|+.+.+|+++++.
T Consensus       235 ~~~~~-i~~~~~~~G~~~~~~~~~~v~~~~p~~~h~~~d~~v~  276 (278)
T 2frn_A          235 EPFET-FKRITKEYGYDVEKLNELKIKRYAPGVWHVVLDLRVF  276 (278)
T ss_dssp             TTHHH-HHHHHHHTTCEEEEEEEEEEEEETTTEEEEEEEEEEE
T ss_pred             cHHHH-HHHHHHHcCCeeEEeeeEEEEecCCCceEEEEEEEEe
Confidence            22233 3566677788766666778999999999999999975

>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}

Probab=99.85  E-value=6.9e-20  Score=184.30  Aligned_cols=150  Identities=23%  Similarity=0.313  Sum_probs=123.7

Q ss_pred             EEEEEcCCC-CcccHHHHHHHHHhccCCCeeEEEEecCCc--cccccccceEEEecCCccEEEEEeCCeEEEEccCc---
Q 046527            2 IAHLNIHDE-LLPFKDVIAKVIYDKNYPRIKTVVNKVGTI--ANEFRVPEFEILAGEDNMVTEVKQYGATFKLDYSL---   75 (380)
Q Consensus         2 Iahinl~~~-~lp~k~~I~~aLldk~~p~iktVv~k~~~i--~~~~r~~~~elLaG~~~~~~~v~E~G~~F~id~~~---   75 (380)
                      ++++++.+. +..+++.|.++|.+.  ..+++|+.|.+..  ..+......++|+|+.+....+.|+|++|.+++..   
T Consensus       117 ~~vvq~~~~~~~~~~~~i~~al~~~--~~~~~i~~k~~~~~r~~~g~~~~~~~l~G~~~~~~~v~E~g~~f~vd~~~~~~  194 (393)
T 4dmg_A          117 VLVLQVRSRGMEALREVWLPALLEV--VAPKGVYERSDVEARRQEGLPERVGVVYGEVPEVLEVEEDGLRFPIPLALAQK  194 (393)
T ss_dssp             EEEEEECSHHHHHTHHHHHHHHHHH--HCCSEEEECCCHHHHHHTTCCCCCEEEEECCCSEEEEEETTEEEEEETTTCCT
T ss_pred             EEEEEECcHHHHHHHHHHHHHHHHH--cCCCEEEEEcCcchHhhcCCCcccceEecCCCCcEEEEECCEEEEEechhccc
Confidence            678888875 668899999999993  3489999987532  22233446789999888888999999999999886   


Q ss_pred             --eeecChHHHHHHHHHhc-cCCCCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEecc
Q 046527           76 --VYWNSRLEHEHLRIISQ-FRPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMD  152 (380)
Q Consensus        76 --ff~n~rl~tE~~r~i~~-i~~g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~D  152 (380)
                        +|++++..   ++.+.. ..+|++|||+|||+|.|++.+|..|+.|+++|+|+.++++|++|++.|++.+  .+.++|
T Consensus       195 tG~f~dqr~~---r~~l~~~~~~g~~VLDlg~GtG~~sl~~a~~ga~V~avDis~~al~~a~~n~~~ng~~~--~~~~~D  269 (393)
T 4dmg_A          195 TGYYLDQREN---RRLFEAMVRPGERVLDVYSYVGGFALRAARKGAYALAVDKDLEALGVLDQAALRLGLRV--DIRHGE  269 (393)
T ss_dssp             TSSCGGGHHH---HHHHHTTCCTTCEEEEESCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCCC--EEEESC
T ss_pred             cCcCCCHHHH---HHHHHHHhcCCCeEEEcccchhHHHHHHHHcCCeEEEEECCHHHHHHHHHHHHHhCCCC--cEEEcc
Confidence              99998854   333333 4459999999999999999999999899999999999999999999999986  456999


Q ss_pred             HHHHHH
Q 046527          153 AREFIR  158 (380)
Q Consensus       153 a~e~l~  158 (380)
                      +.+++.
T Consensus       270 ~~~~l~  275 (393)
T 4dmg_A          270 ALPTLR  275 (393)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998764

>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*

Probab=99.84  E-value=1e-19  Score=182.03  Aligned_cols=153  Identities=15%  Similarity=0.187  Sum_probs=124.3

Q ss_pred             EEEEEcCCC-CcccHHHHHHHHHhccCCCeeEEEEecCCccccccccceEEEecC-CccEEEEEeCCeEEEEccC-----
Q 046527            2 IAHLNIHDE-LLPFKDVIAKVIYDKNYPRIKTVVNKVGTIANEFRVPEFEILAGE-DNMVTEVKQYGATFKLDYS-----   74 (380)
Q Consensus         2 Iahinl~~~-~lp~k~~I~~aLldk~~p~iktVv~k~~~i~~~~r~~~~elLaG~-~~~~~~v~E~G~~F~id~~-----   74 (380)
                      ++++++... .++++..|+++|.+ .+|++++|+.+.+...+   ....++|+|+ .+....+.|+|++|.+++.     
T Consensus       118 ~~vv~~~~~~~~~~~~~i~~~l~~-~~~~~~~i~~~~~~~~~---~~~~~~l~G~~~~~~~~v~e~g~~f~v~~~~~~~t  193 (385)
T 2b78_A          118 FVLFSWYNSFVYQIRDEIVAAFRQ-VYPNFLGAYEKIRFKGI---DNVSAHLYGQEAPEQFLILENGISYNVFLNDGLMT  193 (385)
T ss_dssp             EEEEEECSHHHHHTHHHHHHHHHH-HSTTCSEEEEEECC-------CCEEEEEESCCCSSEEEEETTEEEEECSSSSSCC
T ss_pred             EEEEEECcHHHHHhHHHHHHHHHH-HhCCCCEEEEechhhcC---CccceeecCCCCCceEEEEECCEEEEEeccccccC
Confidence            567777653 55788999999998 45889999998765444   5578899998 4445567889999999998     


Q ss_pred             ceeecChHHHHHHHHHhcc-CCCCeEEEecCCcchhHHHHhhcCC-EEEEEeCCHHHHHHHHHHHHHcCCCC-cEEEEec
Q 046527           75 LVYWNSRLEHEHLRIISQF-RPGETICDMFAGIGPFAIPAAQKGC-IVFANDLNPDSVHYLKINAKVNKVDN-YVRAYNM  151 (380)
Q Consensus        75 ~ff~n~rl~tE~~r~i~~i-~~g~~VLDlfcGvG~fsl~aA~~g~-~V~avDlnp~Aie~a~~Na~lN~l~~-ri~~~~~  151 (380)
                      .||++++.....   +... .+|++|||+|||+|.|++.+|+.|+ +|+++|+++.++++|++|++.|++.+ +++++++
T Consensus       194 ~ff~~~~~~~~~---~~~~~~~~~~VLDl~cGtG~~sl~la~~ga~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~  270 (385)
T 2b78_A          194 GIFLDQRQVRNE---LINGSAAGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVM  270 (385)
T ss_dssp             SSCGGGHHHHHH---HHHTTTBTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEES
T ss_pred             CcCCcHHHHHHH---HHHHhcCCCeEEEEeeccCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEEC
Confidence            899888744333   3333 7889999999999999999999776 99999999999999999999999985 6999999


Q ss_pred             cHHHHHHHHh
Q 046527          152 DAREFIRQLM  161 (380)
Q Consensus       152 Da~e~l~~l~  161 (380)
                      |+.+++..+.
T Consensus       271 D~~~~l~~~~  280 (385)
T 2b78_A          271 DVFDYFKYAR  280 (385)
T ss_dssp             CHHHHHHHHH
T ss_pred             CHHHHHHHHH
Confidence            9999887654

>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}

Probab=99.84  E-value=2.8e-19  Score=178.80  Aligned_cols=155  Identities=14%  Similarity=0.161  Sum_probs=125.0

Q ss_pred             EEEEEcCC-CCcccHHHHHHHHHhccCCCeeEEEEecCCccc--cccccceEEEecCCc-cEEEEEeCCeEEEEccC---
Q 046527            2 IAHLNIHD-ELLPFKDVIAKVIYDKNYPRIKTVVNKVGTIAN--EFRVPEFEILAGEDN-MVTEVKQYGATFKLDYS---   74 (380)
Q Consensus         2 Iahinl~~-~~lp~k~~I~~aLldk~~p~iktVv~k~~~i~~--~~r~~~~elLaG~~~-~~~~v~E~G~~F~id~~---   74 (380)
                      ++++++.. .+.+++..|+++|.+ . ..+++|+.+.+....  +......++|+|+.+ ....++|+|++|.+++.   
T Consensus       123 ~~v~~~~~~~~~~~~~~i~~~l~~-~-~~~~~i~~~~~~~~~~~~g~~~~~~~l~G~~~~~~~~~~~~g~~f~v~~~~~~  200 (396)
T 3c0k_A          123 FLVLQLLSAGAEYQRAALISALQT-L-YPECSIYDRSDVAVRKKEGMELTQGPVTGELPPALLPIEEHGMKLLVDIQHGH  200 (396)
T ss_dssp             EEEEEECSHHHHHTHHHHHHHHHH-H-CTTSEEEEEECCTHHHHTTCCCEEEEEESCCCCSSEEEEETTEEEEECTTTSS
T ss_pred             EEEEEECCHHHHHHHHHHHHHHHH-h-cCCCEEEEeCCchhHhhcCCCccceeEcCCCCCceEEEEECCEEEEEeccccc
Confidence            56777765 355788999999998 3 468899988433222  223346788999865 45566789999999998   


Q ss_pred             --ceeecChHHHHHHHHHhccCCCCeEEEecCCcchhHHHHhhcCC-EEEEEeCCHHHHHHHHHHHHHcCC-CCcEEEEe
Q 046527           75 --LVYWNSRLEHEHLRIISQFRPGETICDMFAGIGPFAIPAAQKGC-IVFANDLNPDSVHYLKINAKVNKV-DNYVRAYN  150 (380)
Q Consensus        75 --~ff~n~rl~tE~~r~i~~i~~g~~VLDlfcGvG~fsl~aA~~g~-~V~avDlnp~Aie~a~~Na~lN~l-~~ri~~~~  150 (380)
                        +|||+++..   +..+..+.++++|||+|||+|.|++.+|+.|+ +|+|+|+++.+++.|++|++.|++ .+++++++
T Consensus       201 ~tgff~~~~~~---~~~l~~~~~~~~VLDl~cG~G~~sl~la~~g~~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~  277 (396)
T 3c0k_A          201 KTGYYLDQRDS---RLATRRYVENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVR  277 (396)
T ss_dssp             TTSSCGGGHHH---HHHHHHHCTTCEEEEESCTTCSHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEE
T ss_pred             cCCcCcCHHHH---HHHHHHhhCCCeEEEeeccCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEE
Confidence              899988854   33444457899999999999999999999865 999999999999999999999999 75699999


Q ss_pred             ccHHHHHHHHh
Q 046527          151 MDAREFIRQLM  161 (380)
Q Consensus       151 ~Da~e~l~~l~  161 (380)
                      +|+.+++..+.
T Consensus       278 ~D~~~~~~~~~  288 (396)
T 3c0k_A          278 DDVFKLLRTYR  288 (396)
T ss_dssp             SCHHHHHHHHH
T ss_pred             CCHHHHHHHHH
Confidence            99999876653

>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51

Probab=99.82  E-value=1.3e-18  Score=173.87  Aligned_cols=157  Identities=28%  Similarity=0.333  Sum_probs=126.6

Q ss_pred             CEEEEEcCCC-CcccHHHHHHHHHhccCCCeeEEEEecCCccc--cccccceEEEecCCccEEEEEeCCeEEEEccC---
Q 046527            1 HIAHLNIHDE-LLPFKDVIAKVIYDKNYPRIKTVVNKVGTIAN--EFRVPEFEILAGEDNMVTEVKQYGATFKLDYS---   74 (380)
Q Consensus         1 hIahinl~~~-~lp~k~~I~~aLldk~~p~iktVv~k~~~i~~--~~r~~~~elLaG~~~~~~~v~E~G~~F~id~~---   74 (380)
                      +++++++... +.+++..|+++|.+. ++.+++|+.+.+....  +......++++|+.+....+.|+|++|.+++.   
T Consensus       119 ~~~v~~~~~~~~~~~~~~i~~~l~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~e~g~~~~~~~~~~~  197 (396)
T 2as0_A          119 DIASLQISSAGMERFKLDVAEAIMEV-EPGIETVFEKNTGRSRRREGLPEIERVLLGKEKYRTIIQEGRAKFIVDMRGQK  197 (396)
T ss_dssp             TEEEEEECCHHHHTTHHHHHHHHHHH-CTTCCEEEEEECSHHHHHTTCCCEEEEEEESCCCEEEEEETTEEEEEESSSSS
T ss_pred             CEEEEEECcHHHHHHHHHHHHHHHHh-CCCCCEEEEeCCcchHhhcCCCcccceecCCCCceEEEEeCCEEEEEeccccc
Confidence            3677777753 557889999999984 3788999988432211  12344778999998667778899999999985   


Q ss_pred             -ceeecChHHHHHHHHHhccC-CCCeEEEecCCcchhHHHHhhcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEec
Q 046527           75 -LVYWNSRLEHEHLRIISQFR-PGETICDMFAGIGPFAIPAAQKGC-IVFANDLNPDSVHYLKINAKVNKVDNYVRAYNM  151 (380)
Q Consensus        75 -~ff~n~rl~tE~~r~i~~i~-~g~~VLDlfcGvG~fsl~aA~~g~-~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~  151 (380)
                       +||++++..   ...+..+. ++++|||+|||+|.|++.+|..|+ +|+++|+++.+++.|++|++.|++.++++++++
T Consensus       198 tg~f~~~~~~---~~~~~~~~~~~~~VLDl~~G~G~~~~~la~~g~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~  274 (396)
T 2as0_A          198 TGFFLDQREN---RLALEKWVQPGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVG  274 (396)
T ss_dssp             SCCCSTTHHH---HHHHGGGCCTTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEES
T ss_pred             cCccCCHHHH---HHHHHHHhhCCCeEEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEC
Confidence             589988854   33344444 889999999999999999999865 999999999999999999999999866999999


Q ss_pred             cHHHHHHHHh
Q 046527          152 DAREFIRQLM  161 (380)
Q Consensus       152 Da~e~l~~l~  161 (380)
                      |+.+++..+.
T Consensus       275 d~~~~~~~~~  284 (396)
T 2as0_A          275 SAFEEMEKLQ  284 (396)
T ss_dssp             CHHHHHHHHH
T ss_pred             CHHHHHHHHH
Confidence            9999876653

>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*

Probab=99.80  E-value=7.1e-18  Score=168.03  Aligned_cols=151  Identities=22%  Similarity=0.226  Sum_probs=122.1

Q ss_pred             EEEEEcCCC-CcccHHHHHHHHHhccCCCeeEEEEecCCcccc--ccccceEEEecCCccEEEEEeCCeEEEEccC----
Q 046527            2 IAHLNIHDE-LLPFKDVIAKVIYDKNYPRIKTVVNKVGTIANE--FRVPEFEILAGEDNMVTEVKQYGATFKLDYS----   74 (380)
Q Consensus         2 Iahinl~~~-~lp~k~~I~~aLldk~~p~iktVv~k~~~i~~~--~r~~~~elLaG~~~~~~~v~E~G~~F~id~~----   74 (380)
                      ++++++... ..+++..|+++|.+ .+   ++|+.+.+.....  ......++|+|+.+....++|+|++|.+++.    
T Consensus       116 ~~vv~~~~~~~~~~~~~i~~~l~~-~~---~~i~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~e~g~~f~i~~~~~~~  191 (382)
T 1wxx_A          116 HAVVQATAHAWEGLLPQVAEALRP-HV---QSVLAKNDARTRELEGLPLYVRPLLGEVPERVQVQEGRVRYLVDLRAGQK  191 (382)
T ss_dssp             EEEEEECSHHHHTTHHHHHHHHGG-GC---SEEEEEECCTHHHHTTCCCEEEEEESCCCSEEEEEETTEEEEEECSTTSC
T ss_pred             EEEEEECcHHHHHHHHHHHHHHHH-Hh---hEEEEcCCchhhhhcCCCcccceecCCCCceEEEEECCEEEEEEchhccc
Confidence            456666653 45778999999987 32   8899885432222  2334677899997667778899999999998    


Q ss_pred             -ceeecChHHHHHHHHHhccCCCCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccH
Q 046527           75 -LVYWNSRLEHEHLRIISQFRPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDA  153 (380)
Q Consensus        75 -~ff~n~rl~tE~~r~i~~i~~g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da  153 (380)
                       .||++++.   .++.+..+ ++++|||+|||+|.+++.+|..+.+|+++|+++.+++.|++|++.|++.+ ++++++|+
T Consensus       192 ~g~f~~~~~---~~~~~~~~-~~~~VLDlg~G~G~~~~~la~~~~~v~~vD~s~~~~~~a~~n~~~n~~~~-~~~~~~d~  266 (382)
T 1wxx_A          192 TGAYLDQRE---NRLYMERF-RGERALDVFSYAGGFALHLALGFREVVAVDSSAEALRRAEENARLNGLGN-VRVLEANA  266 (382)
T ss_dssp             CCCCGGGHH---HHHHGGGC-CEEEEEEETCTTTHHHHHHHHHEEEEEEEESCHHHHHHHHHHHHHTTCTT-EEEEESCH
T ss_pred             CccccchHH---HHHHHHhc-CCCeEEEeeeccCHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCCCC-ceEEECCH
Confidence             68888773   44455566 88999999999999999999886699999999999999999999999988 99999999


Q ss_pred             HHHHHHHh
Q 046527          154 REFIRQLM  161 (380)
Q Consensus       154 ~e~l~~l~  161 (380)
                      .+++..+.
T Consensus       267 ~~~~~~~~  274 (382)
T 1wxx_A          267 FDLLRRLE  274 (382)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99887654

>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51

Probab=99.74  E-value=2.7e-16  Score=154.55  Aligned_cols=149  Identities=12%  Similarity=0.045  Sum_probs=110.4

Q ss_pred             CEEEEEcCCC-CcccHHHHHHHHHhccCCCeeEEEEecCCccccccccceEEEecC-Cc-cEEEEEeCCeEEEEccCcee
Q 046527            1 HIAHLNIHDE-LLPFKDVIAKVIYDKNYPRIKTVVNKVGTIANEFRVPEFEILAGE-DN-MVTEVKQYGATFKLDYSLVY   77 (380)
Q Consensus         1 hIahinl~~~-~lp~k~~I~~aLldk~~p~iktVv~k~~~i~~~~r~~~~elLaG~-~~-~~~~v~E~G~~F~id~~~ff   77 (380)
                      +++++++.+. ++.++..  +++.    ..+++|+.+.+..++     ..++++|+ .+ ....++|+|+.|.+++..++
T Consensus        61 ~~~vvq~~~~~~~~~~~~--~~~~----~~~~~i~~r~~~~eg-----~~~~~~g~~~~~~~~~i~e~g~~f~v~~~~~~  129 (332)
T 2igt_A           61 DYRVVRPEAQALWRPLVP--DRVW----QNADAIFTGDTDEDG-----MGRWRFPKEALGETWPLSLLGVEFLGRFTAFR  129 (332)
T ss_dssp             TEEEEEECTTCCSCCCSC--HHHH----HTCSEEEEECC---C-----CEEEECSSSCCCSEEEEEETTEEEEEECCSSS
T ss_pred             CEEEEEECcHHHhhhhhh--hhhh----cCCcEEEEeCcccCC-----CcceEecCCCCCCceEEEECCEEEEEecCccc
Confidence            4788998875 4444421  2222    235799998644333     33788885 34 67889999999999998766


Q ss_pred             ec--ChHHHHHH-HHHhc---cCCCCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCC-cEEEEe
Q 046527           78 WN--SRLEHEHL-RIISQ---FRPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKVDN-YVRAYN  150 (380)
Q Consensus        78 ~n--~rl~tE~~-r~i~~---i~~g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~lN~l~~-ri~~~~  150 (380)
                      +.  ...+.+.+ .+...   ..++.+|||+|||+|.+++.+++.|++|+++|+|+.+++.|++|++.|++.+ ++++++
T Consensus       130 ~tg~f~dq~~~~~~l~~~~~~~~~~~~VLDlgcGtG~~sl~la~~ga~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~  209 (332)
T 2igt_A          130 HVGVFPEQIVHWEWLKNAVETADRPLKVLNLFGYTGVASLVAAAAGAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWIC  209 (332)
T ss_dssp             CCSCCGGGHHHHHHHHHHHHHSSSCCEEEEETCTTCHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEEC
T ss_pred             cceechHHHHHHHHHHHHHHhcCCCCcEEEcccccCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEE
Confidence            63  22222322 22222   3567899999999999999999998899999999999999999999999986 599999


Q ss_pred             ccHHHHHHHH
Q 046527          151 MDAREFIRQL  160 (380)
Q Consensus       151 ~Da~e~l~~l  160 (380)
                      +|+.+++..+
T Consensus       210 ~D~~~~l~~~  219 (332)
T 2igt_A          210 EDAMKFIQRE  219 (332)
T ss_dssp             SCHHHHHHHH
T ss_pred             CcHHHHHHHH
Confidence            9999987654

>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*

Probab=99.69  E-value=2.9e-16  Score=159.38  Aligned_cols=124  Identities=22%  Similarity=0.308  Sum_probs=103.6

Q ss_pred             CCCeeEEEEecCCcc-ccccccceEEEecCCccEEEEEeCCeEEEEccCceeecChHHHHHH-HHHhccCCCCeEEEecC
Q 046527           27 YPRIKTVVNKVGTIA-NEFRVPEFEILAGEDNMVTEVKQYGATFKLDYSLVYWNSRLEHEHL-RIISQFRPGETICDMFA  104 (380)
Q Consensus        27 ~p~iktVv~k~~~i~-~~~r~~~~elLaG~~~~~~~v~E~G~~F~id~~~ff~n~rl~tE~~-r~i~~i~~g~~VLDlfc  104 (380)
                      +|.+++|+.+.+... +.... ..++|+|++.+.+.+  +|+.|.+++..|||.++.+++.+ +.+..+.++++|||+||
T Consensus       223 ~~~~~~i~~~~~~~~~~~~~g-~~~~l~G~~~i~e~~--~g~~f~~~~~~F~q~n~~~~e~l~~~~~~~~~~~~VLDlgc  299 (425)
T 2jjq_A          223 YFDFDSIYWSVNRSKSDVSYG-DIERFWGKEFIRERL--DDVDYLIHPNSFFQTNSYQAVNLVRKVSELVEGEKILDMYS  299 (425)
T ss_dssp             TCCCSEEEEEECCSSSCCSCC-EEEEEEECSCEEEEE--TTEEEEECTTSCCCSBHHHHHHHHHHHHHHCCSSEEEEETC
T ss_pred             cCCeeEEEEEcCCCCCceecc-eEEEEECCCeEEEEE--CCEEEEEccccccccCHHHHHHHHHHhhccCCCCEEEEeec
Confidence            478888888754433 33334 778999998776666  99999999999999999888765 33323778899999999


Q ss_pred             CcchhHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHH
Q 046527          105 GIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDARE  155 (380)
Q Consensus       105 GvG~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e  155 (380)
                      |+|.|++.+|+.+.+|+|+|+++.+++.|++|++.|++.  ++++++|+.+
T Consensus       300 G~G~~sl~la~~~~~V~gvD~s~~ai~~A~~n~~~ngl~--v~~~~~d~~~  348 (425)
T 2jjq_A          300 GVGTFGIYLAKRGFNVKGFDSNEFAIEMARRNVEINNVD--AEFEVASDRE  348 (425)
T ss_dssp             TTTHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCC--EEEEECCTTT
T ss_pred             cchHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHcCCc--EEEEECChHH
Confidence            999999999999889999999999999999999999986  8999998754

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=99.66  E-value=3e-15  Score=160.63  Aligned_cols=150  Identities=15%  Similarity=0.201  Sum_probs=112.2

Q ss_pred             EEEEEcCCC--------CcccHHHHHHHHHhccCC-CeeEEEEecCCc-cccccccceEEEecCCccEEEEEeCCeEEEE
Q 046527            2 IAHLNIHDE--------LLPFKDVIAKVIYDKNYP-RIKTVVNKVGTI-ANEFRVPEFEILAGEDNMVTEVKQYGATFKL   71 (380)
Q Consensus         2 Iahinl~~~--------~lp~k~~I~~aLldk~~p-~iktVv~k~~~i-~~~~r~~~~elLaG~~~~~~~v~E~G~~F~i   71 (380)
                      ++++++...        +..++..|.++|.+. ++ .+++|+.|.... .+.   ...+. .|+.+....+.|+|++|.+
T Consensus       439 ~lvvq~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~i~~k~r~~~~g~---~~~~~-~g~~~~~~~v~E~g~~~~v  513 (703)
T 3v97_A          439 WVVVQEYAPPKTIDAHKARQRLFDIIAATISV-LGIAPNKLVLKTRERQKGK---NQYQK-LGEKGEFLEVTEYNAHLWV  513 (703)
T ss_dssp             EEEEEECC-------CHHHHHHHHHHHHHHHH-HTCCGGGEEEECCC----------------CCSCCEEEEETTEEEEE
T ss_pred             EEEEEeCCCccccchHHHHHHHHHHHHHHHHH-hCCCcceeEEeccccccCc---chhhc-cCCCCceEEEEECCEEEEE
Confidence            578888652        235567788888773 23 467888876532 111   12222 3666667889999999999


Q ss_pred             ccCc-----eeecChHHHHHHHHHhccCCCCeEEEecCCcchhHHHHhhcCC-EEEEEeCCHHHHHHHHHHHHHcCCC-C
Q 046527           72 DYSL-----VYWNSRLEHEHLRIISQFRPGETICDMFAGIGPFAIPAAQKGC-IVFANDLNPDSVHYLKINAKVNKVD-N  144 (380)
Q Consensus        72 d~~~-----ff~n~rl~tE~~r~i~~i~~g~~VLDlfcGvG~fsl~aA~~g~-~V~avDlnp~Aie~a~~Na~lN~l~-~  144 (380)
                      ++..     +|++++   +.++.+..+.+|++|||+|||+|.|++.++..|+ +|+++|+|+.++++|++|+++|++. +
T Consensus       514 ~~~~~~~tG~f~d~r---~~r~~l~~~~~g~~VLDlg~GtG~~sl~aa~~ga~~V~aVD~s~~al~~a~~N~~~ngl~~~  590 (703)
T 3v97_A          514 NLTDYLDTGLFLDHR---IARRMLGQMSKGKDFLNLFSYTGSATVHAGLGGARSTTTVDMSRTYLEWAERNLRLNGLTGR  590 (703)
T ss_dssp             CSSSSSSCSCCGGGH---HHHHHHHHHCTTCEEEEESCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCST
T ss_pred             eccccccCCCcccHH---HHHHHHHHhcCCCcEEEeeechhHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCcc
Confidence            9874     777877   4444555567899999999999999999999887 6999999999999999999999998 5


Q ss_pred             cEEEEeccHHHHHHH
Q 046527          145 YVRAYNMDAREFIRQ  159 (380)
Q Consensus       145 ri~~~~~Da~e~l~~  159 (380)
                      +++++++|+.++++.
T Consensus       591 ~v~~i~~D~~~~l~~  605 (703)
T 3v97_A          591 AHRLIQADCLAWLRE  605 (703)
T ss_dssp             TEEEEESCHHHHHHH
T ss_pred             ceEEEecCHHHHHHh
Confidence            799999999997654

>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*

Probab=99.64  E-value=1.7e-15  Score=152.51  Aligned_cols=99  Identities=20%  Similarity=0.224  Sum_probs=80.2

Q ss_pred             EEEEeCCeEEEEcc--------CceeecChHHHHHHHH---Hhcc----CCCCeEEEecCCcchhHHHHhhc--C-CEEE
Q 046527           60 TEVKQYGATFKLDY--------SLVYWNSRLEHEHLRI---ISQF----RPGETICDMFAGIGPFAIPAAQK--G-CIVF  121 (380)
Q Consensus        60 ~~v~E~G~~F~id~--------~~ff~n~rl~tE~~r~---i~~i----~~g~~VLDlfcGvG~fsl~aA~~--g-~~V~  121 (380)
                      ..++|+|++|.++.        ..+|+++....++...   +..+    .+|++|||+|||+|.|++.+|++  | .+|+
T Consensus         2 ~~i~E~g~~~~v~~~~~~~~~~~~~Ffn~~~~~nR~l~~~~~~~~~~~~~~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~   81 (392)
T 3axs_A            2 EIVQEGIAKIIVPEIPKTVSSDMPVFYNPRMRVNRDLAVLGLEYLCKKLGRPVKVADPLSASGIRAIRFLLETSCVEKAY   81 (392)
T ss_dssp             EEEEETTEEEEECCCCSSCCTTCCSSCCGGGHHHHHHHHHHHHHHHHHHCSCEEEEESSCTTSHHHHHHHHHCSCEEEEE
T ss_pred             eEEEECCEEEEEecccccccCCCCEEEcCCcHHHHHHHHHHHHHHhhccCCCCEEEECCCcccHHHHHHHHhCCCCCEEE
Confidence            45789999999964        3566655544444332   1222    45899999999999999999984  5 4899


Q ss_pred             EEeCCHHHHHHHHHHHHHcCCCCc-EEEEeccHHHHHH
Q 046527          122 ANDLNPDSVHYLKINAKVNKVDNY-VRAYNMDAREFIR  158 (380)
Q Consensus       122 avDlnp~Aie~a~~Na~lN~l~~r-i~~~~~Da~e~l~  158 (380)
                      ++|+|+.+++.+++|+++|+++++ ++++++|+.+++.
T Consensus        82 avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~  119 (392)
T 3axs_A           82 ANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLR  119 (392)
T ss_dssp             EECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHH
T ss_pred             EEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHH
Confidence            999999999999999999999987 9999999998764

>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}

Probab=99.62  E-value=1e-14  Score=144.60  Aligned_cols=140  Identities=16%  Similarity=0.209  Sum_probs=106.4

Q ss_pred             CcccHHHHHHHHHhccCCC--e-eEEEEecCCccccccccceEEEecCCccEEEEEeCC--eEEEEccCceeecChHHHH
Q 046527           11 LLPFKDVIAKVIYDKNYPR--I-KTVVNKVGTIANEFRVPEFEILAGEDNMVTEVKQYG--ATFKLDYSLVYWNSRLEHE   85 (380)
Q Consensus        11 ~lp~k~~I~~aLldk~~p~--i-ktVv~k~~~i~~~~r~~~~elLaG~~~~~~~v~E~G--~~F~id~~~ff~n~rl~tE   85 (380)
                      +......++++|.+. ++.  + ..++.+         ....++++|++.+.+.+..+|  +.|.+++..|||.++..++
T Consensus       131 ~~~~~~~~~~~l~~~-~~~~~i~~~~~~~---------~~~~~~~~G~~~i~e~~~~~g~~~~~~~~~~~F~Q~n~~~~~  200 (369)
T 3bt7_A          131 LDDEWRQEAEALRDA-LRAQNLNVHLIGR---------ATKTKIELDQDYIDERLPVAGKEMIYRQVENSFTQPNAAMNI  200 (369)
T ss_dssp             CCHHHHHHHHHHHHH-HHTTTCEEEEEEE---------ETTEEEESSCSEEEEECCBTTBCCEEEEETTSCCCSBHHHHH
T ss_pred             CCHHHHHHHHHHHHh-CcCCeeEEEEEeC---------CCceEEEcCCCEEEEEeccCCceEEEEECCCCeecCCHHHHH
Confidence            334456777777663 232  2 122222         134678899886666654478  8899999999999998877


Q ss_pred             HH-H-HHhccC-CCCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHHHHHHh
Q 046527           86 HL-R-IISQFR-PGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFIRQLM  161 (380)
Q Consensus        86 ~~-r-~i~~i~-~g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~l~~l~  161 (380)
                      .+ . ++.... .+.+|||+|||+|.|++++|+.+.+|+|+|+++.+++.|++|++.|++.+ ++++++|+.+++..+.
T Consensus       201 ~l~~~~~~~~~~~~~~vLDl~cG~G~~~l~la~~~~~V~gvd~~~~ai~~a~~n~~~ng~~~-v~~~~~d~~~~~~~~~  278 (369)
T 3bt7_A          201 QMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDN-VQIIRMAAEEFTQAMN  278 (369)
T ss_dssp             HHHHHHHHHTTTCCSEEEEESCTTSHHHHHHGGGSSEEEEECCCHHHHHHHHHHHHHTTCCS-EEEECCCSHHHHHHHS
T ss_pred             HHHHHHHHHhhcCCCEEEEccCCCCHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHcCCCc-eEEEECCHHHHHHHHh
Confidence            65 2 223332 36789999999999999999987899999999999999999999999975 9999999999887653

>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*

Probab=99.56  E-value=4.5e-14  Score=141.30  Aligned_cols=98  Identities=19%  Similarity=0.257  Sum_probs=80.8

Q ss_pred             EEEEeCCeEEEEccC------ceeecChHHHHHHH---HHhccCCCCeEEEecCCcchhHHHHhhc-C-CEEEEEeCCHH
Q 046527           60 TEVKQYGATFKLDYS------LVYWNSRLEHEHLR---IISQFRPGETICDMFAGIGPFAIPAAQK-G-CIVFANDLNPD  128 (380)
Q Consensus        60 ~~v~E~G~~F~id~~------~ff~n~rl~tE~~r---~i~~i~~g~~VLDlfcGvG~fsl~aA~~-g-~~V~avDlnp~  128 (380)
                      +.++|++++|.++..      .+|++++...++..   .+..+ ++.+|||+|||+|.+++.+|+. + .+|+++|+++.
T Consensus         4 ~~~~Eg~~~~~~p~~~~~~~~~~F~np~~~~nr~l~~~~l~~~-~~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~   82 (378)
T 2dul_A            4 IEVQEGKAKILIPKAESIYDSPVFYNPRMALNRDIVVVLLNIL-NPKIVLDALSATGIRGIRFALETPAEEVWLNDISED   82 (378)
T ss_dssp             EEEEETTEEEEEC--------CCCCCGGGHHHHHHHHHHHHHH-CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHH
T ss_pred             eEEEeCcEEEEecCccccCCCCceeCCchHHHHHHHHHHHHHc-CCCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHH
Confidence            568899999999762      67777776666543   22333 7899999999999999999987 4 48999999999


Q ss_pred             HHHHHHHHHHHc---------------CCCCcEEEEeccHHHHHHH
Q 046527          129 SVHYLKINAKVN---------------KVDNYVRAYNMDAREFIRQ  159 (380)
Q Consensus       129 Aie~a~~Na~lN---------------~l~~ri~~~~~Da~e~l~~  159 (380)
                      +++.+++|++.|               ++.+ ++++++|+.+++..
T Consensus        83 av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~-i~v~~~Da~~~~~~  127 (378)
T 2dul_A           83 AYELMKRNVMLNFDGELRESKGRAILKGEKT-IVINHDDANRLMAE  127 (378)
T ss_dssp             HHHHHHHHHHHHCCSCCEECSSEEEEESSSE-EEEEESCHHHHHHH
T ss_pred             HHHHHHHHHHHhcccccccccccccccCCCc-eEEEcCcHHHHHHh
Confidence            999999999999               8876 99999999987643

>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*

Probab=99.49  E-value=2e-13  Score=138.22  Aligned_cols=104  Identities=22%  Similarity=0.339  Sum_probs=88.7

Q ss_pred             eEEEecCCccEEEEEeCCeEEEEccCceeecChHHHHHH--HHHh--ccCCCCeEEEecCCcchhHHHHhhcCCEEEEEe
Q 046527           49 FEILAGEDNMVTEVKQYGATFKLDYSLVYWNSRLEHEHL--RIIS--QFRPGETICDMFAGIGPFAIPAAQKGCIVFAND  124 (380)
Q Consensus        49 ~elLaG~~~~~~~v~E~G~~F~id~~~ff~n~rl~tE~~--r~i~--~i~~g~~VLDlfcGvG~fsl~aA~~g~~V~avD  124 (380)
                      ..++.|...+.+ +  +|+.|.+++..|||.++..++.+  .++.  ...++++|||+|||+|.|++.+|+.+.+|+|+|
T Consensus       239 ~~~l~g~~~~~~-~--~g~~~~~~~~~f~q~n~~~~e~l~~~~~~~l~~~~~~~VLDlgcG~G~~~~~la~~~~~V~gvD  315 (433)
T 1uwv_A          239 LETVSGEMPWYD-S--NGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVE  315 (433)
T ss_dssp             CEEEECCCCEEE-E--TTEEEECCSSSCCCSBHHHHHHHHHHHHHHHTCCTTCEEEEESCTTTTTHHHHHTTSSEEEEEE
T ss_pred             EEEEeCCCcEEE-E--CCEEEEECcccccccCHHHHHHHHHHHHHhhcCCCCCEEEECCCCCCHHHHHHHhhCCEEEEEe
Confidence            467888776655 5  89999999999999988777764  2222  345788999999999999999999988999999


Q ss_pred             CCHHHHHHHHHHHHHcCCCCcEEEEeccHHHH
Q 046527          125 LNPDSVHYLKINAKVNKVDNYVRAYNMDAREF  156 (380)
Q Consensus       125 lnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~  156 (380)
                      +++.+++.|++|++.|++.+ ++++++|+.+.
T Consensus       316 ~s~~al~~A~~n~~~~~~~~-v~f~~~d~~~~  346 (433)
T 1uwv_A          316 GVPALVEKGQQNARLNGLQN-VTFYHENLEED  346 (433)
T ss_dssp             SCHHHHHHHHHHHHHTTCCS-EEEEECCTTSC
T ss_pred             CCHHHHHHHHHHHHHcCCCc-eEEEECCHHHH
Confidence            99999999999999999985 99999998653

>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}

Probab=99.35  E-value=3.5e-11  Score=106.78  Aligned_cols=94  Identities=15%  Similarity=0.152  Sum_probs=70.0

Q ss_pred             CCeEEEEccCceeecChHHHHHH-HHHhcc--CCCCeEEEecCCcchhHHHHhhcCC-EEEEEeCCHHHHHHHHHHHHHc
Q 046527           65 YGATFKLDYSLVYWNSRLEHEHL-RIISQF--RPGETICDMFAGIGPFAIPAAQKGC-IVFANDLNPDSVHYLKINAKVN  140 (380)
Q Consensus        65 ~G~~F~id~~~ff~n~rl~tE~~-r~i~~i--~~g~~VLDlfcGvG~fsl~aA~~g~-~V~avDlnp~Aie~a~~Na~lN  140 (380)
                      .|..+.++...+...+....+.+ ..+...  .++.+|||+|||+|.+++.++..+. +|+|+|+|+.+++.|++|++.+
T Consensus        11 ~g~~l~~~~~~~rp~~~~~~~~l~~~l~~~~~~~~~~vLDlgcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~   90 (189)
T 3p9n_A           11 GGRRIAVPPRGTRPTTDRVRESLFNIVTARRDLTGLAVLDLYAGSGALGLEALSRGAASVLFVESDQRSAAVIARNIEAL   90 (189)
T ss_dssp             TTCEEECCSCCC---CHHHHHHHHHHHHHHSCCTTCEEEEETCTTCHHHHHHHHTTCSEEEEEECCHHHHHHHHHHHHHH
T ss_pred             CCcEecCCCCCCccCcHHHHHHHHHHHHhccCCCCCEEEEeCCCcCHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHc
Confidence            45566666533344444333333 333332  5788999999999999998888776 8999999999999999999999


Q ss_pred             CCCCcEEEEeccHHHHHHH
Q 046527          141 KVDNYVRAYNMDAREFIRQ  159 (380)
Q Consensus       141 ~l~~ri~~~~~Da~e~l~~  159 (380)
                      ++. +++++++|+.+++..
T Consensus        91 ~~~-~v~~~~~d~~~~~~~  108 (189)
T 3p9n_A           91 GLS-GATLRRGAVAAVVAA  108 (189)
T ss_dssp             TCS-CEEEEESCHHHHHHH
T ss_pred             CCC-ceEEEEccHHHHHhh
Confidence            994 599999999887643

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}

Probab=99.29  E-value=4.5e-11  Score=111.87  Aligned_cols=67  Identities=12%  Similarity=0.213  Sum_probs=61.1

Q ss_pred             HhccC-CCCeEEEecCCcchhHHHHhhcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHH
Q 046527           90 ISQFR-PGETICDMFAGIGPFAIPAAQKGC-IVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREF  156 (380)
Q Consensus        90 i~~i~-~g~~VLDlfcGvG~fsl~aA~~g~-~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~  156 (380)
                      ...+. ++.+|||+|||+|.+++.+++++. +|+|+|+++.+++.|++|+..|++.++++++++|+.++
T Consensus        43 ~~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~  111 (259)
T 3lpm_A           43 FSYLPIRKGKIIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKI  111 (259)
T ss_dssp             HCCCCSSCCEEEETTCTTTHHHHHHHTTCCCEEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGG
T ss_pred             HhcCCCCCCEEEEcCCchhHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHh
Confidence            34566 789999999999999999999876 99999999999999999999999998899999998764

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}

Probab=99.29  E-value=2e-11  Score=111.08  Aligned_cols=85  Identities=18%  Similarity=0.222  Sum_probs=67.4

Q ss_pred             CeEEEEccCceeecChHHHHHHHHHhccCCCCeEEEecCC-cchhHHHHhhc-CCEEEEEeCCHHHHHHHHHHHHHcCCC
Q 046527           66 GATFKLDYSLVYWNSRLEHEHLRIISQFRPGETICDMFAG-IGPFAIPAAQK-GCIVFANDLNPDSVHYLKINAKVNKVD  143 (380)
Q Consensus        66 G~~F~id~~~ff~n~rl~tE~~r~i~~i~~g~~VLDlfcG-vG~fsl~aA~~-g~~V~avDlnp~Aie~a~~Na~lN~l~  143 (380)
                      |..|.+++..++  ++..++.+.+...+.++.+|||+||| +|.+++.+++. +.+|+|+|+++.+++.|++|+..+++ 
T Consensus        28 ~~~~~~~~~~~~--p~~~~~~l~~~~~~~~~~~vLDlG~G~~G~~~~~la~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-  104 (230)
T 3evz_A           28 GLDIEYHPKGLV--TTPISRYIFLKTFLRGGEVALEIGTGHTAMMALMAEKFFNCKVTATEVDEEFFEYARRNIERNNS-  104 (230)
T ss_dssp             CCCCCCCTTSCC--CCHHHHHHHHHTTCCSSCEEEEECCTTTCHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHTTC-
T ss_pred             CCceecCCCeEe--CCCchhhhHhHhhcCCCCEEEEcCCCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHhCC-
Confidence            334444444332  45445554344456789999999999 99999999998 78999999999999999999999998 


Q ss_pred             CcEEEEeccHH
Q 046527          144 NYVRAYNMDAR  154 (380)
Q Consensus       144 ~ri~~~~~Da~  154 (380)
                       +++++++|+.
T Consensus       105 -~v~~~~~d~~  114 (230)
T 3evz_A          105 -NVRLVKSNGG  114 (230)
T ss_dssp             -CCEEEECSSC
T ss_pred             -CcEEEeCCch
Confidence             4899998863

>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}

Probab=99.28  E-value=5.2e-12  Score=119.95  Aligned_cols=114  Identities=18%  Similarity=0.156  Sum_probs=79.7

Q ss_pred             ceEEEecCCccEEEEEeCCeEEEEccCceeecChHH---HHHHHHHhccCCCCeEEEecCCcchhHHHHhhcCCEEEEEe
Q 046527           48 EFEILAGEDNMVTEVKQYGATFKLDYSLVYWNSRLE---HEHLRIISQFRPGETICDMFAGIGPFAIPAAQKGCIVFAND  124 (380)
Q Consensus        48 ~~elLaG~~~~~~~v~E~G~~F~id~~~ff~n~rl~---tE~~r~i~~i~~g~~VLDlfcGvG~fsl~aA~~g~~V~avD  124 (380)
                      ++.++.|++.+...+.+.+..|.+|+..-....|..   .+.+..+....++.+|||+|||+|.+++.+|+.+++|+++|
T Consensus        33 ~~~l~~~~~~l~l~~~~~~~~~~~dF~~~~~~~R~~~~~~~~l~~a~~~~~~~~VLDlgcG~G~~a~~lA~~g~~V~~vD  112 (258)
T 2r6z_A           33 GSYLLAEHDTVSLRLVGEKSNVIVDFTSGAAQYRRTKGGGELIAKAVNHTAHPTVWDATAGLGRDSFVLASLGLTVTAFE  112 (258)
T ss_dssp             SEEEEEETTEEEEEETTCSCCBCCCCC-------------CHHHHHTTGGGCCCEEETTCTTCHHHHHHHHTTCCEEEEE
T ss_pred             CEEEEEECCEEEEEEcCCCCeEEEEeCCcHHHHhhhccchHHHHHHhCcCCcCeEEEeeCccCHHHHHHHHhCCEEEEEE
Confidence            455677776555555433334444433222222211   12222222455678999999999999999999999999999


Q ss_pred             CCH-------HHHHHHHHHHHHcCCCCcEEEEeccHHHHHHHHh
Q 046527          125 LNP-------DSVHYLKINAKVNKVDNYVRAYNMDAREFIRQLM  161 (380)
Q Consensus       125 lnp-------~Aie~a~~Na~lN~l~~ri~~~~~Da~e~l~~l~  161 (380)
                      +++       ++++.|++|++.|++.++++++++|+.+++..+.
T Consensus       113 ~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~~~~l~~~~  156 (258)
T 2r6z_A          113 QHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAAEQMPALV  156 (258)
T ss_dssp             CCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHHHHHHHHH
T ss_pred             CChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCHHHHHHhhh
Confidence            999       9999999999999988789999999999887653

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=99.25  E-value=1.4e-10  Score=108.84  Aligned_cols=91  Identities=22%  Similarity=0.324  Sum_probs=72.1

Q ss_pred             eCCeEEEEccCceeecChHHHHHH--HHHh-ccCCCCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHc
Q 046527           64 QYGATFKLDYSLVYWNSRLEHEHL--RIIS-QFRPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVN  140 (380)
Q Consensus        64 E~G~~F~id~~~ff~n~rl~tE~~--r~i~-~i~~g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~lN  140 (380)
                      .+++.+.+++..+|......+..+  +.+. .+.++.+|||+|||+|.+++.+++.|.+|+++|+++.+++.+++|+..|
T Consensus        86 ~~~~~~~l~p~~~fgtg~~~tt~~~~~~l~~~~~~~~~VLDiGcG~G~l~~~la~~g~~v~gvDi~~~~v~~a~~n~~~~  165 (254)
T 2nxc_A           86 GAEIPLVIEPGMAFGTGHHETTRLALKALARHLRPGDKVLDLGTGSGVLAIAAEKLGGKALGVDIDPMVLPQAEANAKRN  165 (254)
T ss_dssp             SSSEEEECCCC-----CCSHHHHHHHHHHHHHCCTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCGGGHHHHHHHHHHT
T ss_pred             CCceEEEECCCccccCCCCHHHHHHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhCCeEEEEECCHHHHHHHHHHHHHc
Confidence            367788999999998765554432  3332 3578899999999999999999999889999999999999999999999


Q ss_pred             CCCCcEEEEeccHHHH
Q 046527          141 KVDNYVRAYNMDAREF  156 (380)
Q Consensus       141 ~l~~ri~~~~~Da~e~  156 (380)
                      ++.  ++++++|+.+.
T Consensus       166 ~~~--v~~~~~d~~~~  179 (254)
T 2nxc_A          166 GVR--PRFLEGSLEAA  179 (254)
T ss_dssp             TCC--CEEEESCHHHH
T ss_pred             CCc--EEEEECChhhc
Confidence            986  88999998764

>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46

Probab=99.24  E-value=5.8e-11  Score=107.29  Aligned_cols=63  Identities=22%  Similarity=0.232  Sum_probs=56.6

Q ss_pred             CCCCeEEEecCCcchhHHHHhhcCC-EEEEEeCCHHHHHHHHHHHHHcCCC-CcEEEEeccHHHH
Q 046527           94 RPGETICDMFAGIGPFAIPAAQKGC-IVFANDLNPDSVHYLKINAKVNKVD-NYVRAYNMDAREF  156 (380)
Q Consensus        94 ~~g~~VLDlfcGvG~fsl~aA~~g~-~V~avDlnp~Aie~a~~Na~lN~l~-~ri~~~~~Da~e~  156 (380)
                      .++.+|||+|||+|.+++.++..+. +|+|+|+|+.+++.|++|++.+++. ++++++++|+.++
T Consensus        52 ~~~~~vLDlGcGtG~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~  116 (201)
T 2ift_A           52 IHQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDF  116 (201)
T ss_dssp             HTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHH
T ss_pred             cCCCeEEEcCCccCHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHH
Confidence            3678999999999999999777775 9999999999999999999999984 4599999999765

>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*

Probab=99.24  E-value=5.1e-11  Score=114.17  Aligned_cols=89  Identities=24%  Similarity=0.306  Sum_probs=74.2

Q ss_pred             CCeEEEEccCceeecChHHHHHH--HHHhcc--CCCCeEEEecCCcchhHHHHhhc-CCEEEEEeCCHHHHHHHHHHHHH
Q 046527           65 YGATFKLDYSLVYWNSRLEHEHL--RIISQF--RPGETICDMFAGIGPFAIPAAQK-GCIVFANDLNPDSVHYLKINAKV  139 (380)
Q Consensus        65 ~G~~F~id~~~ff~n~rl~tE~~--r~i~~i--~~g~~VLDlfcGvG~fsl~aA~~-g~~V~avDlnp~Aie~a~~Na~l  139 (380)
                      .|..|.+++..|.  +|..++.+  .++..+  .++.+|||+|||+|.+++.+++. +++|+|+|+|+.+++.|++|++.
T Consensus        91 ~~~~~~v~~~~li--pr~~te~lv~~~l~~~~~~~~~~vLDlG~GsG~~~~~la~~~~~~v~~vDis~~al~~A~~n~~~  168 (284)
T 1nv8_A           91 MGLSFLVEEGVFV--PRPETEELVELALELIRKYGIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAER  168 (284)
T ss_dssp             TTEEEECCTTSCC--CCTTHHHHHHHHHHHHHHHTCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHH
T ss_pred             CCeEEEeCCCcee--cChhHHHHHHHHHHHhcccCCCEEEEEeCchhHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHH
Confidence            7899999988765  55555543  222222  36789999999999999999988 67999999999999999999999


Q ss_pred             cCCCCcEEEEeccHHH
Q 046527          140 NKVDNYVRAYNMDARE  155 (380)
Q Consensus       140 N~l~~ri~~~~~Da~e  155 (380)
                      +++.++++++++|+.+
T Consensus       169 ~~l~~~v~~~~~D~~~  184 (284)
T 1nv8_A          169 HGVSDRFFVRKGEFLE  184 (284)
T ss_dssp             TTCTTSEEEEESSTTG
T ss_pred             cCCCCceEEEECcchh
Confidence            9999889999999865

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=99.23  E-value=6.9e-11  Score=103.99  Aligned_cols=63  Identities=11%  Similarity=-0.009  Sum_probs=57.1

Q ss_pred             hccCCCCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHH
Q 046527           91 SQFRPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAR  154 (380)
Q Consensus        91 ~~i~~g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~  154 (380)
                      ..+.+|.+|||+|||+|.+++.+++.+.+|+|+|+++.+++.|++|++.+++. +++++++|+.
T Consensus        18 ~~~~~~~~vLDiGcG~G~~~~~la~~~~~v~~vD~s~~~l~~a~~~~~~~~~~-~v~~~~~~~~   80 (185)
T 3mti_A           18 EVLDDESIVVDATMGNGNDTAFLAGLSKKVYAFDVQEQALGKTSQRLSDLGIE-NTELILDGHE   80 (185)
T ss_dssp             TTCCTTCEEEESCCTTSHHHHHHHTTSSEEEEEESCHHHHHHHHHHHHHHTCC-CEEEEESCGG
T ss_pred             HhCCCCCEEEEEcCCCCHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCCC-cEEEEeCcHH
Confidence            45678999999999999999999999889999999999999999999999995 5999886654

>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46

Probab=99.23  E-value=1.1e-10  Score=101.99  Aligned_cols=66  Identities=26%  Similarity=0.383  Sum_probs=60.3

Q ss_pred             cCCCCeEEEecCCcchhHHHHhhcC-CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHHHH
Q 046527           93 FRPGETICDMFAGIGPFAIPAAQKG-CIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFIR  158 (380)
Q Consensus        93 i~~g~~VLDlfcGvG~fsl~aA~~g-~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~l~  158 (380)
                      ..++.+|||+|||+|.+++.+++.+ .+|+++|+++.+++.|++|++.+++.++++++++|+.+++.
T Consensus        29 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~   95 (177)
T 2esr_A           29 YFNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAID   95 (177)
T ss_dssp             CCCSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHH
T ss_pred             hcCCCeEEEeCCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhHH
Confidence            5678899999999999999999886 49999999999999999999999998779999999988653

>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46

Probab=99.19  E-value=2.9e-10  Score=97.78  Aligned_cols=93  Identities=20%  Similarity=0.272  Sum_probs=71.0

Q ss_pred             CCeEEEEccCceeecChHHHHHH-HHHhc-cCCCCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCC
Q 046527           65 YGATFKLDYSLVYWNSRLEHEHL-RIISQ-FRPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKV  142 (380)
Q Consensus        65 ~G~~F~id~~~ff~n~rl~tE~~-r~i~~-i~~g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~lN~l  142 (380)
                      .|..|.+.+. +........+.+ ..+.. +.++.+|||+|||+|.+++.+++.+..|+++|+++.+++.|++|+..+++
T Consensus        10 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~vLD~GcG~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~   88 (171)
T 1ws6_A           10 RGVALKVPAS-ARPSPVRLRKALFDYLRLRYPRRGRFLDPFAGSGAVGLEAASEGWEAVLVEKDPEAVRLLKENVRRTGL   88 (171)
T ss_dssp             TTCEECCCTT-CCCCCHHHHHHHHHHHHHHCTTCCEEEEETCSSCHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHHHTC
T ss_pred             CCeEecCCCC-CCCCHHHHHHHHHHHHHhhccCCCeEEEeCCCcCHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHcCC
Confidence            3556666666 333333222222 22222 33788999999999999999999988999999999999999999999988


Q ss_pred             CCcEEEEeccHHHHHHHH
Q 046527          143 DNYVRAYNMDAREFIRQL  160 (380)
Q Consensus       143 ~~ri~~~~~Da~e~l~~l  160 (380)
                        +++++++|+.+++..+
T Consensus        89 --~~~~~~~d~~~~~~~~  104 (171)
T 1ws6_A           89 --GARVVALPVEVFLPEA  104 (171)
T ss_dssp             --CCEEECSCHHHHHHHH
T ss_pred             --ceEEEeccHHHHHHhh
Confidence              4899999999876554

>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46

Probab=99.19  E-value=3e-10  Score=99.33  Aligned_cols=69  Identities=23%  Similarity=0.333  Sum_probs=61.8

Q ss_pred             ccCCCCeEEEecCCcchhHHHHhhcC-CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHHHHHH
Q 046527           92 QFRPGETICDMFAGIGPFAIPAAQKG-CIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFIRQL  160 (380)
Q Consensus        92 ~i~~g~~VLDlfcGvG~fsl~aA~~g-~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~l~~l  160 (380)
                      ...++.+|||+|||+|.+++.+++.+ .+|+++|+++.+++.|++|+..+++.++++++++|+.+.+..+
T Consensus        41 ~~~~~~~vLD~GcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~  110 (187)
T 2fhp_A           41 PYFDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQF  110 (187)
T ss_dssp             SCCSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHH
T ss_pred             hhcCCCCEEEeCCccCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHH
Confidence            34578899999999999999988876 4999999999999999999999998777999999999876554

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4

Probab=99.19  E-value=2.6e-10  Score=99.51  Aligned_cols=91  Identities=23%  Similarity=0.241  Sum_probs=70.2

Q ss_pred             CCeEEEEccC-ceeecCh--HHHHHHHHHhccCCCCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcC
Q 046527           65 YGATFKLDYS-LVYWNSR--LEHEHLRIISQFRPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVNK  141 (380)
Q Consensus        65 ~G~~F~id~~-~ff~n~r--l~tE~~r~i~~i~~g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~lN~  141 (380)
                      .|..+.+... .+|..+.  ..++.+.......++.+|||+|||+|.+++.+++.+.+|+++|+++.+++.+++|+..++
T Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~   98 (194)
T 1dus_A           19 RGKKLKFKTDSGVFSYGKVDKGTKILVENVVVDKDDDILDLGCGYGVIGIALADEVKSTTMADINRRAIKLAKENIKLNN   98 (194)
T ss_dssp             TTEEEEEEEETTSTTTTSCCHHHHHHHHHCCCCTTCEEEEETCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHTT
T ss_pred             CCCceEEEeCCCcCCccccchHHHHHHHHcccCCCCeEEEeCCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHHHHHHcC
Confidence            5677777443 4555553  233333222344588899999999999999999988899999999999999999999999


Q ss_pred             CCC-cEEEEeccHHH
Q 046527          142 VDN-YVRAYNMDARE  155 (380)
Q Consensus       142 l~~-ri~~~~~Da~e  155 (380)
                      +.+ +++++++|+.+
T Consensus        99 ~~~~~~~~~~~d~~~  113 (194)
T 1dus_A           99 LDNYDIRVVHSDLYE  113 (194)
T ss_dssp             CTTSCEEEEECSTTT
T ss_pred             CCccceEEEECchhc
Confidence            876 68999887643

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=99.18  E-value=3.9e-10  Score=100.14  Aligned_cols=66  Identities=15%  Similarity=0.093  Sum_probs=59.0

Q ss_pred             HhccCCCCeEEEecCCcchhHHHHhhc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHH
Q 046527           90 ISQFRPGETICDMFAGIGPFAIPAAQK---GCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDARE  155 (380)
Q Consensus        90 i~~i~~g~~VLDlfcGvG~fsl~aA~~---g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e  155 (380)
                      ...+.++.+|||+|||+|.+++.+++.   ..+|+|+|+++.+++.|++|++.+++.++++++++|+.+
T Consensus        17 ~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~   85 (197)
T 3eey_A           17 KMFVKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQN   85 (197)
T ss_dssp             HHHCCTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGG
T ss_pred             HhcCCCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHH
Confidence            345788999999999999999999986   249999999999999999999999997679999999754

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=99.17  E-value=7.4e-10  Score=100.48  Aligned_cols=65  Identities=18%  Similarity=0.203  Sum_probs=59.8

Q ss_pred             hccCCCCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHH
Q 046527           91 SQFRPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDARE  155 (380)
Q Consensus        91 ~~i~~g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e  155 (380)
                      ..+.++++|||+|||+|.+++.+++.+++|+++|+++.+++.|++|++.+++.++++++++|+.+
T Consensus        51 l~~~~~~~vLDlGcG~G~~~~~la~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~  115 (204)
T 3njr_A           51 LAPRRGELLWDIGGGSGSVSVEWCLAGGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPA  115 (204)
T ss_dssp             HCCCTTCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTG
T ss_pred             cCCCCCCEEEEecCCCCHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhh
Confidence            35678899999999999999999999889999999999999999999999998569999999865

>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46

Probab=99.15  E-value=4.1e-10  Score=101.75  Aligned_cols=62  Identities=21%  Similarity=0.214  Sum_probs=56.6

Q ss_pred             CCCeEEEecCCcchhHHHHhhcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHHH
Q 046527           95 PGETICDMFAGIGPFAIPAAQKGC-IVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFI  157 (380)
Q Consensus        95 ~g~~VLDlfcGvG~fsl~aA~~g~-~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~l  157 (380)
                      ++.+|||+|||+|.+++.++..+. +|+++|+++.+++.|++|++.+++. +++++++|+.+++
T Consensus        54 ~~~~vLDlgcG~G~~~~~l~~~~~~~V~~vD~s~~~l~~a~~~~~~~~~~-~v~~~~~D~~~~~  116 (202)
T 2fpo_A           54 VDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKAG-NARVVNSNAMSFL  116 (202)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCC-SEEEECSCHHHHH
T ss_pred             CCCeEEEeCCCcCHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHHcCCC-cEEEEECCHHHHH
Confidence            678999999999999999887775 9999999999999999999999985 5999999998754

>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A

Probab=99.14  E-value=9.7e-10  Score=104.21  Aligned_cols=69  Identities=25%  Similarity=0.188  Sum_probs=61.0

Q ss_pred             HhccCCCCeEEEecCCcchhHHHHhhc--C-CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHHHHH
Q 046527           90 ISQFRPGETICDMFAGIGPFAIPAAQK--G-CIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFIRQ  159 (380)
Q Consensus        90 i~~i~~g~~VLDlfcGvG~fsl~aA~~--g-~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~l~~  159 (380)
                      +....+|++|||+|||+|.+++.++..  + .+|+|+|+++.+++.+++|++.+++.+ ++++++|+.++...
T Consensus        78 ~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~~-v~~~~~D~~~~~~~  149 (274)
T 3ajd_A           78 VLNPREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVLN-TIIINADMRKYKDY  149 (274)
T ss_dssp             HHCCCTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCCS-EEEEESCHHHHHHH
T ss_pred             HhCCCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCCc-EEEEeCChHhcchh
Confidence            345678999999999999999999973  4 699999999999999999999999985 99999999887543

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}

Probab=99.13  E-value=9.9e-10  Score=95.08  Aligned_cols=87  Identities=14%  Similarity=0.153  Sum_probs=67.7

Q ss_pred             EEEEccCceeecC--hHHHHH----HHHHhccCCCCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcC
Q 046527           68 TFKLDYSLVYWNS--RLEHEH----LRIISQFRPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVNK  141 (380)
Q Consensus        68 ~F~id~~~ff~n~--rl~tE~----~r~i~~i~~g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~lN~  141 (380)
                      +|.++...|++.+  +...+.    +.......++.+|||+|||+|.+++.+++.+.+|+++|+++.+++.+++|++.++
T Consensus         2 ~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~   81 (183)
T 2yxd_A            2 KYMIPDEEFIRREGVPITKEEIRAVSIGKLNLNKDDVVVDVGCGSGGMTVEIAKRCKFVYAIDYLDGAIEVTKQNLAKFN   81 (183)
T ss_dssp             --CCCSTTSCCBTTBCCCCHHHHHHHHHHHCCCTTCEEEEESCCCSHHHHHHHTTSSEEEEEECSHHHHHHHHHHHHHTT
T ss_pred             CccCCchheeeccCCCcCHHHHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHcC
Confidence            4666777777654  222222    1112345678899999999999999999977799999999999999999999999


Q ss_pred             CCCcEEEEeccHHH
Q 046527          142 VDNYVRAYNMDARE  155 (380)
Q Consensus       142 l~~ri~~~~~Da~e  155 (380)
                      +.+ ++++++|+.+
T Consensus        82 ~~~-~~~~~~d~~~   94 (183)
T 2yxd_A           82 IKN-CQIIKGRAED   94 (183)
T ss_dssp             CCS-EEEEESCHHH
T ss_pred             CCc-EEEEECCccc
Confidence            865 9999999876

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=99.13  E-value=6.9e-10  Score=99.36  Aligned_cols=62  Identities=21%  Similarity=0.193  Sum_probs=56.7

Q ss_pred             ccCCCCeEEEecCCcchhHHHHhhcC--CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHH
Q 046527           92 QFRPGETICDMFAGIGPFAIPAAQKG--CIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAR  154 (380)
Q Consensus        92 ~i~~g~~VLDlfcGvG~fsl~aA~~g--~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~  154 (380)
                      .+.++.+|||+|||+|.+++.+++.+  .+|+++|+++.+++.|++|++.+++. +++++++|+.
T Consensus        37 ~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~  100 (204)
T 3e05_A           37 RLQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVAR-NVTLVEAFAP  100 (204)
T ss_dssp             TCCTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTCT-TEEEEECCTT
T ss_pred             CCCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEeCChh
Confidence            46788999999999999999999987  69999999999999999999999985 5999998875

>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*

Probab=99.12  E-value=9.4e-11  Score=107.55  Aligned_cols=86  Identities=23%  Similarity=0.227  Sum_probs=68.8

Q ss_pred             ccCceeecChHH-HHH-HHHHhccCCCCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEE
Q 046527           72 DYSLVYWNSRLE-HEH-LRIISQFRPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAY  149 (380)
Q Consensus        72 d~~~ff~n~rl~-tE~-~r~i~~i~~g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~  149 (380)
                      +...+|+..... .+. ...+....++.+|||+|||+|.+++.+++.+.+|+|+|+++.+++.|++|++.+++.++++++
T Consensus        53 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vLD~gcG~G~~~~~la~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~  132 (241)
T 3gdh_A           53 DREGWFSVTPEKIAEHIAGRVSQSFKCDVVVDAFCGVGGNTIQFALTGMRVIAIDIDPVKIALARNNAEVYGIADKIEFI  132 (241)
T ss_dssp             CHHHHHHCCCHHHHHHHHHHHHHHSCCSEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEE
T ss_pred             cccceeecCHHHHHHHHHHHhhhccCCCEEEECccccCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHcCCCcCeEEE
Confidence            444555544421 222 233344457899999999999999999999999999999999999999999999997679999


Q ss_pred             eccHHHHH
Q 046527          150 NMDAREFI  157 (380)
Q Consensus       150 ~~Da~e~l  157 (380)
                      ++|+.++.
T Consensus       133 ~~d~~~~~  140 (241)
T 3gdh_A          133 CGDFLLLA  140 (241)
T ss_dssp             ESCHHHHG
T ss_pred             ECChHHhc
Confidence            99998764

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0

Probab=99.11  E-value=1.5e-09  Score=98.28  Aligned_cols=83  Identities=12%  Similarity=0.115  Sum_probs=69.7

Q ss_pred             cChHHHHHHHHHhccCCCCeEEEecCCcchhHHHHhhc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHH
Q 046527           79 NSRLEHEHLRIISQFRPGETICDMFAGIGPFAIPAAQK---GCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDARE  155 (380)
Q Consensus        79 n~rl~tE~~r~i~~i~~g~~VLDlfcGvG~fsl~aA~~---g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e  155 (380)
                      .+......+..+....++.+|||+|||+|.+++.++..   +.+|+++|+++.+++.|++|++.+++.++++++++|+.+
T Consensus        48 ~~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  127 (225)
T 3tr6_A           48 TAPEQAQLLALLVKLMQAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKD  127 (225)
T ss_dssp             CCHHHHHHHHHHHHHHTCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHH
T ss_pred             cCHHHHHHHHHHHHhhCCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHH
Confidence            34444444444445567889999999999999999987   679999999999999999999999999889999999998


Q ss_pred             HHHHHh
Q 046527          156 FIRQLM  161 (380)
Q Consensus       156 ~l~~l~  161 (380)
                      .+..+.
T Consensus       128 ~~~~~~  133 (225)
T 3tr6_A          128 TLAELI  133 (225)
T ss_dssp             HHHHHH
T ss_pred             HHHHhh
Confidence            876654

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=99.11  E-value=2.5e-09  Score=93.00  Aligned_cols=66  Identities=21%  Similarity=0.260  Sum_probs=60.1

Q ss_pred             hccCCCCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHH
Q 046527           91 SQFRPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREF  156 (380)
Q Consensus        91 ~~i~~g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~  156 (380)
                      ..+.++.+|||+|||+|.+++.+++.+.+|+++|+++.+++.+++|+..+++.+++.++++|+.+.
T Consensus        29 ~~~~~~~~vldiG~G~G~~~~~l~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~   94 (192)
T 1l3i_A           29 AEPGKNDVAVDVGCGTGGVTLELAGRVRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEA   94 (192)
T ss_dssp             HCCCTTCEEEEESCTTSHHHHHHHTTSSEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHH
T ss_pred             cCCCCCCEEEEECCCCCHHHHHHHHhcCEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHHh
Confidence            356788999999999999999999988999999999999999999999999966699999998763

>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54

Probab=99.10  E-value=1e-10  Score=108.42  Aligned_cols=90  Identities=14%  Similarity=0.190  Sum_probs=69.6

Q ss_pred             CeEEEEccCceeec--ChHHHHHH--HHHhccC----CCCeEEEecCCcchhHHHHhhc--CCEEEEEeCCHHHHHHHHH
Q 046527           66 GATFKLDYSLVYWN--SRLEHEHL--RIISQFR----PGETICDMFAGIGPFAIPAAQK--GCIVFANDLNPDSVHYLKI  135 (380)
Q Consensus        66 G~~F~id~~~ff~n--~rl~tE~~--r~i~~i~----~g~~VLDlfcGvG~fsl~aA~~--g~~V~avDlnp~Aie~a~~  135 (380)
                      |..|.++...+++.  +|..++.+  .++..+.    ++.+|||+|||+|.+++.++..  +++|+|+|+++.+++.|++
T Consensus        28 ~~~~~~~~~~~~p~~~~r~~~~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~  107 (254)
T 2h00_A           28 GLSIDIPLERLIPTVPLRLNYIHWVEDLIGHQDSDKSTLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKK  107 (254)
T ss_dssp             CCCCCCCTTSCCCCHHHHHHHHHHHHHHHCCCCGGGCCCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHH
T ss_pred             CeeeecCccccCCCccchHHHHHHHHHHHhhccccCCCCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHH
Confidence            55566666655553  34444433  2232222    5779999999999999998876  5799999999999999999


Q ss_pred             HHHHcCCCCcEEEEeccHHH
Q 046527          136 NAKVNKVDNYVRAYNMDARE  155 (380)
Q Consensus       136 Na~lN~l~~ri~~~~~Da~e  155 (380)
                      |++.+++.++++++++|+.+
T Consensus       108 ~~~~~~~~~~v~~~~~d~~~  127 (254)
T 2h00_A          108 NVEQNNLSDLIKVVKVPQKT  127 (254)
T ss_dssp             HHHHTTCTTTEEEEECCTTC
T ss_pred             HHHHcCCCccEEEEEcchhh
Confidence            99999998889999999754

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}

Probab=99.08  E-value=3.7e-10  Score=106.33  Aligned_cols=68  Identities=12%  Similarity=0.115  Sum_probs=60.9

Q ss_pred             ccCCCCeEEEecCCcchhHHHHhhcC--CEEEEEeCCHHHHHHHHHHHHH---cCCCCcEEEEeccHHHHHHH
Q 046527           92 QFRPGETICDMFAGIGPFAIPAAQKG--CIVFANDLNPDSVHYLKINAKV---NKVDNYVRAYNMDAREFIRQ  159 (380)
Q Consensus        92 ~i~~g~~VLDlfcGvG~fsl~aA~~g--~~V~avDlnp~Aie~a~~Na~l---N~l~~ri~~~~~Da~e~l~~  159 (380)
                      ...++.+|||+|||+|.+++.++++.  .+|+++|+++.+++.|++|+..   |++.++++++++|+.++...
T Consensus        33 ~~~~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~  105 (260)
T 2ozv_A           33 ADDRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKA  105 (260)
T ss_dssp             CCCSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHH
T ss_pred             cccCCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhh
Confidence            45678899999999999999999885  5999999999999999999999   99988899999999876543

>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}

Probab=99.06  E-value=6.8e-10  Score=108.79  Aligned_cols=65  Identities=29%  Similarity=0.463  Sum_probs=59.0

Q ss_pred             hccCCCCeEEEecCCcchhHHHHhhcC---CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHH
Q 046527           91 SQFRPGETICDMFAGIGPFAIPAAQKG---CIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREF  156 (380)
Q Consensus        91 ~~i~~g~~VLDlfcGvG~fsl~aA~~g---~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~  156 (380)
                      ..+.++..|||+|||+|.+++.+|..+   .+|+|+|+++.+++.|++|++.+++. ++++.++|+.++
T Consensus       199 ~~~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~-~i~~~~~D~~~~  266 (354)
T 3tma_A          199 ADARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLS-WIRFLRADARHL  266 (354)
T ss_dssp             TTCCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCT-TCEEEECCGGGG
T ss_pred             hCCCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCC-ceEEEeCChhhC
Confidence            456788999999999999999999875   69999999999999999999999998 699999998753

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*

Probab=99.05  E-value=3.1e-09  Score=96.21  Aligned_cols=81  Identities=15%  Similarity=0.107  Sum_probs=68.8

Q ss_pred             hHHHHHHHHHhccCCCCeEEEecCCcchhHHHHhhc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHHH
Q 046527           81 RLEHEHLRIISQFRPGETICDMFAGIGPFAIPAAQK---GCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFI  157 (380)
Q Consensus        81 rl~tE~~r~i~~i~~g~~VLDlfcGvG~fsl~aA~~---g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~l  157 (380)
                      +.....+..+....++.+|||+|||+|.+++.+++.   +++|+++|+++.+++.|++|+..+++.++++++++|+.+.+
T Consensus        44 ~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~  123 (223)
T 3duw_A           44 PTQGKFLQLLVQIQGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSL  123 (223)
T ss_dssp             HHHHHHHHHHHHHHTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHH
T ss_pred             HHHHHHHHHHHHhhCCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHH
Confidence            333334444445567899999999999999999987   67999999999999999999999999988999999999887


Q ss_pred             HHHh
Q 046527          158 RQLM  161 (380)
Q Consensus       158 ~~l~  161 (380)
                      ..+.
T Consensus       124 ~~~~  127 (223)
T 3duw_A          124 QQIE  127 (223)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            7664

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=99.05  E-value=1e-09  Score=109.36  Aligned_cols=95  Identities=14%  Similarity=0.062  Sum_probs=70.5

Q ss_pred             EEEeCCeEEEEccCceeecC-hHHHHHHHHHhccCCCCeEEEecCCcchhHHHHhhc--CCEEEEEeCCHHHHHHHHHHH
Q 046527           61 EVKQYGATFKLDYSLVYWNS-RLEHEHLRIISQFRPGETICDMFAGIGPFAIPAAQK--GCIVFANDLNPDSVHYLKINA  137 (380)
Q Consensus        61 ~v~E~G~~F~id~~~ff~n~-rl~tE~~r~i~~i~~g~~VLDlfcGvG~fsl~aA~~--g~~V~avDlnp~Aie~a~~Na  137 (380)
                      .+.+.++.|..+++.|.+.. ...+..+.......++.+|||+|||+|.+++.+++.  +++|+++|+++.+++.+++|+
T Consensus       187 ~~~~~~~~~~~~pg~Fs~~~~d~~~~~ll~~l~~~~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~  266 (375)
T 4dcm_A          187 KLEGTDWTIHNHANVFSRTGLDIGARFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNV  266 (375)
T ss_dssp             EETTTTEEEEECTTCTTCSSCCHHHHHHHHTCCCSCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHH
T ss_pred             EecCCceEEEeCCCcccCCcccHHHHHHHHhCcccCCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHH
Confidence            34455677777888777633 222222211112345689999999999999999998  569999999999999999999


Q ss_pred             HHcCCCC--cEEEEeccHHH
Q 046527          138 KVNKVDN--YVRAYNMDARE  155 (380)
Q Consensus       138 ~lN~l~~--ri~~~~~Da~e  155 (380)
                      ..|++.+  +++++.+|+.+
T Consensus       267 ~~ngl~~~~~v~~~~~D~~~  286 (375)
T 4dcm_A          267 ETNMPEALDRCEFMINNALS  286 (375)
T ss_dssp             HHHCGGGGGGEEEEECSTTT
T ss_pred             HHcCCCcCceEEEEechhhc
Confidence            9999874  47778887653

>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*

Probab=99.04  E-value=1.6e-09  Score=99.60  Aligned_cols=65  Identities=15%  Similarity=0.185  Sum_probs=59.3

Q ss_pred             CCCeEEEecCCcchhHHHHhhcC--CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHHHHHH
Q 046527           95 PGETICDMFAGIGPFAIPAAQKG--CIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFIRQL  160 (380)
Q Consensus        95 ~g~~VLDlfcGvG~fsl~aA~~g--~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~l~~l  160 (380)
                      ++.+|||+|||+|.+++.+|+..  ..|+|+|+++.+++.|++|++.+++.+ ++++++|+.+++...
T Consensus        34 ~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~l~n-v~~~~~Da~~~l~~~  100 (218)
T 3dxy_A           34 EAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGLSN-LRVMCHDAVEVLHKM  100 (218)
T ss_dssp             CCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTTCSS-EEEECSCHHHHHHHH
T ss_pred             CCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhCCCc-EEEEECCHHHHHHHH
Confidence            57899999999999999999874  489999999999999999999999987 999999999987653

>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*

Probab=99.04  E-value=4.5e-10  Score=104.97  Aligned_cols=67  Identities=10%  Similarity=0.092  Sum_probs=61.3

Q ss_pred             HhccCCCCeEEEecCCcchhHHHHhhcCC--EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHH
Q 046527           90 ISQFRPGETICDMFAGIGPFAIPAAQKGC--IVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREF  156 (380)
Q Consensus        90 i~~i~~g~~VLDlfcGvG~fsl~aA~~g~--~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~  156 (380)
                      ...+.+|.+|||+|||+|.+++.+|+.+.  +|+|+|+|+.+++.|++|++.|++.++++++.+|+.+.
T Consensus        10 ~~~v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~~   78 (225)
T 3kr9_A           10 ASFVSQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAA   78 (225)
T ss_dssp             HTTSCTTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGG
T ss_pred             HHhCCCCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhhh
Confidence            34578899999999999999999999863  89999999999999999999999998999999998654

>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}

Probab=99.03  E-value=4.8e-10  Score=106.04  Aligned_cols=69  Identities=10%  Similarity=0.105  Sum_probs=62.5

Q ss_pred             HHhccCCCCeEEEecCCcchhHHHHhhcCC--EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHHH
Q 046527           89 IISQFRPGETICDMFAGIGPFAIPAAQKGC--IVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFI  157 (380)
Q Consensus        89 ~i~~i~~g~~VLDlfcGvG~fsl~aA~~g~--~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~l  157 (380)
                      +...+.+|.+|||+|||+|.+++.+++.+.  +|+|+|+|+.+++.|++|++.|++.+++++.++|+.+.+
T Consensus        15 i~~~v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~   85 (244)
T 3gnl_A           15 VASYITKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVI   85 (244)
T ss_dssp             HHTTCCSSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGC
T ss_pred             HHHhCCCCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhcc
Confidence            345678899999999999999999999873  899999999999999999999999999999999987643

>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*

Probab=99.03  E-value=4.6e-09  Score=99.03  Aligned_cols=88  Identities=22%  Similarity=0.294  Sum_probs=70.4

Q ss_pred             CCeEEEEccCceeecChHHHHHH--HHHhcc-CCCCeEEEecCCcchhHHHHhhc--CCEEEEEeCCHHHHHHHHHHHHH
Q 046527           65 YGATFKLDYSLVYWNSRLEHEHL--RIISQF-RPGETICDMFAGIGPFAIPAAQK--GCIVFANDLNPDSVHYLKINAKV  139 (380)
Q Consensus        65 ~G~~F~id~~~ff~n~rl~tE~~--r~i~~i-~~g~~VLDlfcGvG~fsl~aA~~--g~~V~avDlnp~Aie~a~~Na~l  139 (380)
                      .|..|.+++..+..  |..++.+  .++..+ .++.+|||+|||+|.+++.++..  +.+|+++|+++.+++.+++|+..
T Consensus        78 ~~~~~~~~~~~~ip--r~~te~l~~~~l~~~~~~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~  155 (276)
T 2b3t_A           78 WSLPLFVSPATLIP--RPDTECLVEQALARLPEQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQH  155 (276)
T ss_dssp             TTEEEECCTTSCCC--CTTHHHHHHHHHHHSCSSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHH
T ss_pred             CCceEEeCCCCccc--CchHHHHHHHHHHhcccCCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHH
Confidence            78888888876543  4444543  233333 56789999999999999999965  56999999999999999999999


Q ss_pred             cCCCCcEEEEeccHHH
Q 046527          140 NKVDNYVRAYNMDARE  155 (380)
Q Consensus       140 N~l~~ri~~~~~Da~e  155 (380)
                      +++.+ ++++++|+.+
T Consensus       156 ~~~~~-v~~~~~d~~~  170 (276)
T 2b3t_A          156 LAIKN-IHILQSDWFS  170 (276)
T ss_dssp             HTCCS-EEEECCSTTG
T ss_pred             cCCCc-eEEEEcchhh
Confidence            99875 9999988754

>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38

Probab=99.03  E-value=1.8e-09  Score=104.81  Aligned_cols=66  Identities=23%  Similarity=0.264  Sum_probs=58.6

Q ss_pred             HhccCCCCeEEEecCCcchhHHHHhhc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHH
Q 046527           90 ISQFRPGETICDMFAGIGPFAIPAAQK---GCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREF  156 (380)
Q Consensus        90 i~~i~~g~~VLDlfcGvG~fsl~aA~~---g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~  156 (380)
                      +..+.+|++|||+|||+|.+++.++..   +.+|+|+|+++.+++.+++|++.+++.+ ++++++|+.++
T Consensus       113 ~l~~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~~-v~~~~~D~~~~  181 (315)
T 1ixk_A          113 ALDPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLN-VILFHSSSLHI  181 (315)
T ss_dssp             HHCCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCS-EEEESSCGGGG
T ss_pred             HhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCCe-EEEEECChhhc
Confidence            446788999999999999999999975   3599999999999999999999999986 99999998643

>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53

Probab=99.03  E-value=1.9e-09  Score=98.31  Aligned_cols=61  Identities=18%  Similarity=0.177  Sum_probs=56.4

Q ss_pred             CCCeEEEecCCcchhHHHHhhc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHH
Q 046527           95 PGETICDMFAGIGPFAIPAAQK--GCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREF  156 (380)
Q Consensus        95 ~g~~VLDlfcGvG~fsl~aA~~--g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~  156 (380)
                      ++.+|||+|||+|.+++.+|+.  +..|+|+|+++.+++.|++|+..+++.+ ++++++|+.++
T Consensus        38 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~~~n-v~~~~~d~~~l  100 (213)
T 2fca_A           38 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQN-VKLLNIDADTL  100 (213)
T ss_dssp             CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSS-EEEECCCGGGH
T ss_pred             CCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcCCCC-EEEEeCCHHHH
Confidence            5789999999999999999987  5699999999999999999999999976 99999999873

>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*

Probab=99.02  E-value=1.3e-09  Score=108.23  Aligned_cols=63  Identities=17%  Similarity=0.154  Sum_probs=59.3

Q ss_pred             cCCCCeEEEecCCcchhHHHHhhcCC--EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHH
Q 046527           93 FRPGETICDMFAGIGPFAIPAAQKGC--IVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDARE  155 (380)
Q Consensus        93 i~~g~~VLDlfcGvG~fsl~aA~~g~--~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e  155 (380)
                      +.++.+|||+|||+|.+++.++..+.  +|+|+|+|+.+++.|++|++.+++.+++++.++|+.+
T Consensus       215 ~~~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~~  279 (373)
T 3tm4_A          215 ELDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQ  279 (373)
T ss_dssp             TCCSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCGGG
T ss_pred             cCCCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhh
Confidence            77899999999999999999999887  9999999999999999999999997779999999865

>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}

Probab=99.02  E-value=6.3e-10  Score=104.38  Aligned_cols=69  Identities=10%  Similarity=0.060  Sum_probs=62.7

Q ss_pred             HHhccCCCCeEEEecCCcchhHHHHhhcCC--EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHHH
Q 046527           89 IISQFRPGETICDMFAGIGPFAIPAAQKGC--IVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFI  157 (380)
Q Consensus        89 ~i~~i~~g~~VLDlfcGvG~fsl~aA~~g~--~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~l  157 (380)
                      +...+.+|++|||+|||+|.+++.+++.+.  +|+|+|+++.+++.|++|++.|++.+++++.++|+.+.+
T Consensus        15 i~~~v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~   85 (230)
T 3lec_A           15 VANYVPKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAF   85 (230)
T ss_dssp             HHTTSCTTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGC
T ss_pred             HHHhCCCCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhcc
Confidence            345678899999999999999999999873  899999999999999999999999999999999987653

>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53

Probab=99.02  E-value=8.1e-10  Score=99.96  Aligned_cols=60  Identities=15%  Similarity=0.169  Sum_probs=54.7

Q ss_pred             CCCeEEEecCCcchhHHHHhhc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHH
Q 046527           95 PGETICDMFAGIGPFAIPAAQK--GCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDARE  155 (380)
Q Consensus        95 ~g~~VLDlfcGvG~fsl~aA~~--g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e  155 (380)
                      ++.+|||+|||+|.+++.+++.  +.+|+|+|+++.+++.|++|+..+++.+ ++++++|+.+
T Consensus        41 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~~~~-v~~~~~d~~~  102 (214)
T 1yzh_A           41 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPN-IKLLWVDGSD  102 (214)
T ss_dssp             CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSS-EEEEECCSSC
T ss_pred             CCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcCCCC-EEEEeCCHHH
Confidence            5789999999999999999987  4699999999999999999999999864 9999998865

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*

Probab=99.01  E-value=1.1e-09  Score=109.49  Aligned_cols=89  Identities=21%  Similarity=0.200  Sum_probs=69.5

Q ss_pred             CCeEEEEccCceeec-ChHHHHHH-HHH-hc----cCCCCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHHHH
Q 046527           65 YGATFKLDYSLVYWN-SRLEHEHL-RII-SQ----FRPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINA  137 (380)
Q Consensus        65 ~G~~F~id~~~ff~n-~rl~tE~~-r~i-~~----i~~g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~Na  137 (380)
                      .++.|..+++.|++. .+..++.+ ..+ ..    ..++.+|||+|||+|.+++.+++.+.+|+++|+|+.+++.|++|+
T Consensus       196 ~~~~~~~~pgvFs~~~~d~~t~~ll~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~la~~g~~V~gvDis~~al~~A~~n~  275 (381)
T 3dmg_A          196 AEYTFHHLPGVFSAGKVDPASLLLLEALQERLGPEGVRGRQVLDLGAGYGALTLPLARMGAEVVGVEDDLASVLSLQKGL  275 (381)
T ss_dssp             EEEEEEECTTCTTTTSCCHHHHHHHHHHHHHHCTTTTTTCEEEEETCTTSTTHHHHHHTTCEEEEEESBHHHHHHHHHHH
T ss_pred             ceEEEEeCCCceeCCCCCHHHHHHHHHHHHhhcccCCCCCEEEEEeeeCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHH
Confidence            345777788777765 33333332 222 22    237889999999999999999999999999999999999999999


Q ss_pred             HHcCCCCcEEEEeccHHH
Q 046527          138 KVNKVDNYVRAYNMDARE  155 (380)
Q Consensus       138 ~lN~l~~ri~~~~~Da~e  155 (380)
                      ..|++.  ++++++|+.+
T Consensus       276 ~~~~~~--v~~~~~D~~~  291 (381)
T 3dmg_A          276 EANALK--AQALHSDVDE  291 (381)
T ss_dssp             HHTTCC--CEEEECSTTT
T ss_pred             HHcCCC--eEEEEcchhh
Confidence            999985  7888888753

>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}

Probab=99.01  E-value=4.4e-09  Score=107.70  Aligned_cols=70  Identities=21%  Similarity=0.280  Sum_probs=61.7

Q ss_pred             HHHhccCCCCeEEEecCCcchhHHHHhhc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHHHH
Q 046527           88 RIISQFRPGETICDMFAGIGPFAIPAAQK---GCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFIR  158 (380)
Q Consensus        88 r~i~~i~~g~~VLDlfcGvG~fsl~aA~~---g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~l~  158 (380)
                      ..+....+|++|||+|||+|..++.+|..   ..+|+|+|+++.+++.+++|++.+|+.+ +.++++|+.++..
T Consensus        98 ~~~L~~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~n-v~v~~~Da~~l~~  170 (456)
T 3m4x_A           98 GTAAAAKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVSN-AIVTNHAPAELVP  170 (456)
T ss_dssp             HHHHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCSS-EEEECCCHHHHHH
T ss_pred             HHHcCCCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCc-eEEEeCCHHHhhh
Confidence            33445788999999999999999999975   3599999999999999999999999986 9999999988754

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=99.01  E-value=3.7e-09  Score=91.57  Aligned_cols=63  Identities=21%  Similarity=0.205  Sum_probs=56.0

Q ss_pred             ccCCCCeEEEecCCcchhHHHHhhc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHH
Q 046527           92 QFRPGETICDMFAGIGPFAIPAAQK--GCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDARE  155 (380)
Q Consensus        92 ~i~~g~~VLDlfcGvG~fsl~aA~~--g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e  155 (380)
                      .+.++.+|||+|||+|.+++.+++.  +.+|+++|+++.+++.|++|+..+++.+++ ++++|+.+
T Consensus        22 ~~~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~d~~~   86 (178)
T 3hm2_A           22 APKPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRI-AVQQGAPR   86 (178)
T ss_dssp             CCCTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCTTSE-EEECCTTG
T ss_pred             cccCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCCCCE-EEecchHh
Confidence            4568889999999999999999987  569999999999999999999999998668 88888643

>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}

Probab=99.01  E-value=5.3e-10  Score=112.25  Aligned_cols=98  Identities=17%  Similarity=0.258  Sum_probs=73.7

Q ss_pred             cEEEEEeCCeEEEEccCceeec---Ch------HHHHHH----HHHhccCCCCeEEEecCCcchhHHHHhhcCC------
Q 046527           58 MVTEVKQYGATFKLDYSLVYWN---SR------LEHEHL----RIISQFRPGETICDMFAGIGPFAIPAAQKGC------  118 (380)
Q Consensus        58 ~~~~v~E~G~~F~id~~~ff~n---~r------l~tE~~----r~i~~i~~g~~VLDlfcGvG~fsl~aA~~g~------  118 (380)
                      +...+.++.+.+.+|...--+.   .|      .-.|.+    .....+.++..|||+|||+|.|++.+|..+.      
T Consensus       151 i~v~l~~~~~~~~ld~sg~~L~krgyr~~~~~Apl~e~lAa~ll~l~~~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~  230 (393)
T 3k0b_A          151 LEVSILKDEVTLTIDTSGAGLHKRGYRLAQGSAPIKETMAAALVLLTSWHPDRPFYDPVCGSGTIPIEAALIGQNIAPGF  230 (393)
T ss_dssp             EEEEEETTEEEEEEESSSSCTTCCSTTTTSCSCSCCHHHHHHHHHHSCCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTT
T ss_pred             EEEEEECCEEEEEEecCCCcccccccccCCCCCCCcHHHHHHHHHHhCCCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCc
Confidence            4456677889999996542110   01      001222    2234567889999999999999999997643      


Q ss_pred             ----------------------------------EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHH
Q 046527          119 ----------------------------------IVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDARE  155 (380)
Q Consensus       119 ----------------------------------~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e  155 (380)
                                                        +|+|+|+|+.+++.|++|++.+++.+++++.++|+.+
T Consensus       231 ~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~  301 (393)
T 3k0b_A          231 NREFVSETWDWMPKQVWADARQEAEDLANYDQPLNIIGGDIDARLIEIAKQNAVEAGLGDLITFRQLQVAD  301 (393)
T ss_dssp             TSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHHHHHHHHHTTCTTCSEEEECCGGG
T ss_pred             cccchhhccccCCHHHHHHHHHHHHHhhcccCCceEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChHh
Confidence                                              4999999999999999999999999889999998754

>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32

Probab=99.01  E-value=2.6e-09  Score=95.50  Aligned_cols=77  Identities=21%  Similarity=0.198  Sum_probs=61.2

Q ss_pred             eecChHHHHHH-HHHh--ccCCCCeEEEecCCcchhHHHHhhcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEecc
Q 046527           77 YWNSRLEHEHL-RIIS--QFRPGETICDMFAGIGPFAIPAAQKGC-IVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMD  152 (380)
Q Consensus        77 f~n~rl~tE~~-r~i~--~i~~g~~VLDlfcGvG~fsl~aA~~g~-~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~D  152 (380)
                      |+.+....+.+ ..+.  ...++.+|||+|||+|.+++.+++.+. +|+|+|+++.+++.+++|+..+++  +++++++|
T Consensus        28 ~~~~~~~~~~l~~~~~~~~~~~~~~vlD~g~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~--~~~~~~~d  105 (207)
T 1wy7_A           28 YRTPGNAASELLWLAYSLGDIEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKG--KFKVFIGD  105 (207)
T ss_dssp             CCCCHHHHHHHHHHHHHTTSSTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGTT--SEEEEESC
T ss_pred             ecCchHHHHHHHHHHHHcCCCCcCEEEEeeCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCC--CEEEEECc
Confidence            44555444433 2222  245788999999999999999999875 899999999999999999999988  48999988


Q ss_pred             HHH
Q 046527          153 ARE  155 (380)
Q Consensus       153 a~e  155 (380)
                      +.+
T Consensus       106 ~~~  108 (207)
T 1wy7_A          106 VSE  108 (207)
T ss_dssp             GGG
T ss_pred             hHH
Confidence            754

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=99.00  E-value=1.2e-09  Score=100.87  Aligned_cols=64  Identities=20%  Similarity=0.176  Sum_probs=59.1

Q ss_pred             hccCCCCeEEEecCCcchhHHHHhhc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHH
Q 046527           91 SQFRPGETICDMFAGIGPFAIPAAQK---GCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAR  154 (380)
Q Consensus        91 ~~i~~g~~VLDlfcGvG~fsl~aA~~---g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~  154 (380)
                      ..+.++.+|||+|||+|.+++.++..   +.+|+++|+++.+++.|++|++.+++.++++++++|+.
T Consensus        89 ~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~  155 (255)
T 3mb5_A           89 AGISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIY  155 (255)
T ss_dssp             TTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGG
T ss_pred             hCCCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchh
Confidence            45678999999999999999999988   56999999999999999999999999888999999876

>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*

Probab=99.00  E-value=4.8e-10  Score=108.65  Aligned_cols=96  Identities=8%  Similarity=0.007  Sum_probs=64.2

Q ss_pred             ccEEEEEeCCeEEEEccCceeecChHHHHHHHHHhccCCCCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHHH
Q 046527           57 NMVTEVKQYGATFKLDYSLVYWNSRLEHEHLRIISQFRPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKIN  136 (380)
Q Consensus        57 ~~~~~v~E~G~~F~id~~~ff~n~rl~tE~~r~i~~i~~g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~N  136 (380)
                      +..+...++|++.+-.++.-|..+....+++.....+.++++|||+|||+|.++..++..+.+|+|+|+++++++.++++
T Consensus        12 ~~~~~~~~~~~~~~k~~GQnfL~d~~i~~~Iv~~l~~~~~~~VLEIG~G~G~lT~~La~~~~~V~aVEid~~li~~a~~~   91 (295)
T 3gru_A           12 SGLVPRGSHMFKPKKKLGQCFLIDKNFVNKAVESANLTKDDVVLEIGLGKGILTEELAKNAKKVYVIEIDKSLEPYANKL   91 (295)
T ss_dssp             ------------------CCEECCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHSSEEEEEESCGGGHHHHHHH
T ss_pred             chhchhHhcCCCCccccCccccCCHHHHHHHHHhcCCCCcCEEEEECCCchHHHHHHHhcCCEEEEEECCHHHHHHHHHH
Confidence            44566667888888888876676665545444344567899999999999999999999988999999999999999999


Q ss_pred             HHHcCCCCcEEEEeccHHH
Q 046527          137 AKVNKVDNYVRAYNMDARE  155 (380)
Q Consensus       137 a~lN~l~~ri~~~~~Da~e  155 (380)
                      +..  .. +++++++|+.+
T Consensus        92 ~~~--~~-~v~vi~gD~l~  107 (295)
T 3gru_A           92 KEL--YN-NIEIIWGDALK  107 (295)
T ss_dssp             HHH--CS-SEEEEESCTTT
T ss_pred             hcc--CC-CeEEEECchhh
Confidence            872  33 49999999864

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=98.99  E-value=1e-08  Score=95.51  Aligned_cols=79  Identities=13%  Similarity=0.093  Sum_probs=66.7

Q ss_pred             hHHHHHHHHHhccCCCCeEEEecCCcchhHHHHhhc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHHH
Q 046527           81 RLEHEHLRIISQFRPGETICDMFAGIGPFAIPAAQK---GCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFI  157 (380)
Q Consensus        81 rl~tE~~r~i~~i~~g~~VLDlfcGvG~fsl~aA~~---g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~l  157 (380)
                      ......+..+....++.+|||+|||+|..++.+|+.   +.+|+++|+++.+++.|++|++.+++.++++++.+|+.+++
T Consensus        49 ~~~~~~l~~l~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l  128 (248)
T 3tfw_A           49 ANQGQFLALLVRLTQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSL  128 (248)
T ss_dssp             HHHHHHHHHHHHHHTCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHH
T ss_pred             HHHHHHHHHHHhhcCCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHH
Confidence            333344444445567899999999999999999987   67999999999999999999999999988999999998876


Q ss_pred             HH
Q 046527          158 RQ  159 (380)
Q Consensus       158 ~~  159 (380)
                      ..
T Consensus       129 ~~  130 (248)
T 3tfw_A          129 ES  130 (248)
T ss_dssp             HT
T ss_pred             Hh
Confidence            43

>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}

Probab=98.98  E-value=6e-10  Score=111.48  Aligned_cols=98  Identities=21%  Similarity=0.343  Sum_probs=74.0

Q ss_pred             cEEEEEeCCeEEEEccCc--eee-----cC--hHHHHHH----HHHhccCCCCeEEEecCCcchhHHHHhhcC-------
Q 046527           58 MVTEVKQYGATFKLDYSL--VYW-----NS--RLEHEHL----RIISQFRPGETICDMFAGIGPFAIPAAQKG-------  117 (380)
Q Consensus        58 ~~~~v~E~G~~F~id~~~--ff~-----n~--rl~tE~~----r~i~~i~~g~~VLDlfcGvG~fsl~aA~~g-------  117 (380)
                      +...+.++++.+.+|...  .+.     ..  ....|.+    ..+..+.++..|||+|||+|.|++.+|..+       
T Consensus       145 i~~~i~~~~~~~~lD~sG~~l~krgyr~~~~~Apl~e~lAa~ll~~~~~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~  224 (385)
T 3ldu_A          145 IFVFIHKDKVTISIDTTGDALHKRGYREKANKAPIRETLAAGLIYLTPWKAGRVLVDPMCGSGTILIEAAMIGINMAPGL  224 (385)
T ss_dssp             EEEEEETTEEEEEEESCCSCTTCCSCCCC--CCCCCHHHHHHHHHTSCCCTTSCEEETTCTTCHHHHHHHHHHTTCCTTT
T ss_pred             EEEEEECCEEEEEEecCCChhhhcccccCCCCCCCcHHHHHHHHHhhCCCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCc
Confidence            556677788999999663  111     11  0011222    122456788999999999999999998764       


Q ss_pred             ---------------------------------CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHH
Q 046527          118 ---------------------------------CIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDARE  155 (380)
Q Consensus       118 ---------------------------------~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e  155 (380)
                                                       .+|+|+|+++.+++.|++|+..+++.+.+++.++|+.+
T Consensus       225 ~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~ai~~Ar~Na~~~gl~~~i~~~~~D~~~  295 (385)
T 3ldu_A          225 NREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIYGYDIDEESIDIARENAEIAGVDEYIEFNVGDATQ  295 (385)
T ss_dssp             TSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCGGG
T ss_pred             ccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhh
Confidence                                             36999999999999999999999998779999998754

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=98.98  E-value=3e-09  Score=95.06  Aligned_cols=89  Identities=21%  Similarity=0.246  Sum_probs=67.0

Q ss_pred             CCeEEEEccCceeecChHHHHH--HHHH-hccCCCCeEEEecCCcchhHHHHhhcCC-EEEEEeCCHHHHHHHHHHHHHc
Q 046527           65 YGATFKLDYSLVYWNSRLEHEH--LRII-SQFRPGETICDMFAGIGPFAIPAAQKGC-IVFANDLNPDSVHYLKINAKVN  140 (380)
Q Consensus        65 ~G~~F~id~~~ff~n~rl~tE~--~r~i-~~i~~g~~VLDlfcGvG~fsl~aA~~g~-~V~avDlnp~Aie~a~~Na~lN  140 (380)
                      ....+.+++...|......+..  +..+ ..+.++.+|||+|||+|.+++.+++.+. +|+++|+++.+++.|++|+..+
T Consensus        27 ~~~~~~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~  106 (205)
T 3grz_A           27 DQEIIRLDPGLAFGTGNHQTTQLAMLGIERAMVKPLTVADVGTGSGILAIAAHKLGAKSVLATDISDESMTAAEENAALN  106 (205)
T ss_dssp             TCEEEEESCC-----CCHHHHHHHHHHHHHHCSSCCEEEEETCTTSHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHT
T ss_pred             CceeEEecCCcccCCCCCccHHHHHHHHHHhccCCCEEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHc
Confidence            3456677777655544333222  2233 2367889999999999999999998876 9999999999999999999999


Q ss_pred             CCCCcEEEEeccHH
Q 046527          141 KVDNYVRAYNMDAR  154 (380)
Q Consensus       141 ~l~~ri~~~~~Da~  154 (380)
                      ++.+ ++++++|+.
T Consensus       107 ~~~~-v~~~~~d~~  119 (205)
T 3grz_A          107 GIYD-IALQKTSLL  119 (205)
T ss_dssp             TCCC-CEEEESSTT
T ss_pred             CCCc-eEEEecccc
Confidence            9987 899998864

>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}

Probab=98.97  E-value=2.8e-10  Score=101.12  Aligned_cols=64  Identities=27%  Similarity=0.268  Sum_probs=40.0

Q ss_pred             CCCCeEEEecCCcchhHHHHhhc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHHHHH
Q 046527           94 RPGETICDMFAGIGPFAIPAAQK--GCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFIRQ  159 (380)
Q Consensus        94 ~~g~~VLDlfcGvG~fsl~aA~~--g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~l~~  159 (380)
                      .++.+|||+|||+|.+++.+++.  +.+|+++|+++.+++.|++|+..+++  +++++++|+.+.+..
T Consensus        29 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~   94 (215)
T 4dzr_A           29 PSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFGA--VVDWAAADGIEWLIE   94 (215)
T ss_dssp             CTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC---------------------CCHHHHHHHHHH
T ss_pred             CCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhCC--ceEEEEcchHhhhhh
Confidence            67889999999999999999998  45999999999999999999999988  589999999885543

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=98.97  E-value=1.2e-08  Score=92.55  Aligned_cols=85  Identities=11%  Similarity=0.021  Sum_probs=70.4

Q ss_pred             eecChHHHHHHHHHhccCCCCeEEEecCCcchhHHHHhhc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccH
Q 046527           77 YWNSRLEHEHLRIISQFRPGETICDMFAGIGPFAIPAAQK---GCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDA  153 (380)
Q Consensus        77 f~n~rl~tE~~r~i~~i~~g~~VLDlfcGvG~fsl~aA~~---g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da  153 (380)
                      +..+......+..+....++.+|||+|||+|.+++.+++.   +.+|+++|+++.+++.|++|++.+++.++++++++|+
T Consensus        51 ~~~~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~  130 (229)
T 2avd_A           51 SMMTCEQAQLLANLARLIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPA  130 (229)
T ss_dssp             GSCCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCH
T ss_pred             CccCHHHHHHHHHHHHhcCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCH
Confidence            3444444444444455677899999999999999999986   5699999999999999999999999987899999999


Q ss_pred             HHHHHHHh
Q 046527          154 REFIRQLM  161 (380)
Q Consensus       154 ~e~l~~l~  161 (380)
                      .+.+..+.
T Consensus       131 ~~~~~~~~  138 (229)
T 2avd_A          131 LETLDELL  138 (229)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            98876654

>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E

Probab=98.95  E-value=1.8e-09  Score=100.15  Aligned_cols=64  Identities=16%  Similarity=0.242  Sum_probs=56.6

Q ss_pred             cCCCCeEEEecCCcchhHHHHhhcC--CEEEEEeCCHHHHHHHHHHHHHc--------CCCCcEEEEeccHHHHH
Q 046527           93 FRPGETICDMFAGIGPFAIPAAQKG--CIVFANDLNPDSVHYLKINAKVN--------KVDNYVRAYNMDAREFI  157 (380)
Q Consensus        93 i~~g~~VLDlfcGvG~fsl~aA~~g--~~V~avDlnp~Aie~a~~Na~lN--------~l~~ri~~~~~Da~e~l  157 (380)
                      +.++.+|||+|||+|.+++.+|+.+  ..|+|+|+++.+++.+++|++.+        ++.+ ++++++|+.+++
T Consensus        47 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~n-v~~~~~D~~~~l  120 (246)
T 2vdv_E           47 MTKKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQN-INVLRGNAMKFL  120 (246)
T ss_dssp             BSCCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTT-EEEEECCTTSCG
T ss_pred             CCCCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCc-EEEEeccHHHHH
Confidence            4578899999999999999999875  48999999999999999999987        7765 999999987643

>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}

Probab=98.95  E-value=1.2e-09  Score=110.57  Aligned_cols=67  Identities=18%  Similarity=0.208  Sum_probs=61.3

Q ss_pred             cCCCCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHc--CCCCcEEEEeccHHHHHHHH
Q 046527           93 FRPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVN--KVDNYVRAYNMDAREFIRQL  160 (380)
Q Consensus        93 i~~g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~lN--~l~~ri~~~~~Da~e~l~~l  160 (380)
                      +.+|.+|||+|||+|.+++.+++.+.+|+++|+|+.+++.|++|++.+  ++ ++++++++|+.+++..+
T Consensus        91 l~~g~~VLDLgcG~G~~al~LA~~g~~V~~VD~s~~~l~~Ar~N~~~~~~gl-~~i~~i~~Da~~~L~~~  159 (410)
T 3ll7_A           91 IREGTKVVDLTGGLGIDFIALMSKASQGIYIERNDETAVAARHNIPLLLNEG-KDVNILTGDFKEYLPLI  159 (410)
T ss_dssp             SCTTCEEEESSCSSSHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHSCTT-CEEEEEESCGGGSHHHH
T ss_pred             cCCCCEEEEeCCCchHHHHHHHhcCCEEEEEECCHHHHHHHHHhHHHhccCC-CcEEEEECcHHHhhhhc
Confidence            445899999999999999999999999999999999999999999998  88 46999999999987654

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}

Probab=98.95  E-value=6.8e-09  Score=95.54  Aligned_cols=74  Identities=19%  Similarity=0.201  Sum_probs=63.4

Q ss_pred             HHHHHHhccCCCCeEEEecCCcchhHHHHhh--cCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHHHH
Q 046527           85 EHLRIISQFRPGETICDMFAGIGPFAIPAAQ--KGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFIR  158 (380)
Q Consensus        85 E~~r~i~~i~~g~~VLDlfcGvG~fsl~aA~--~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~l~  158 (380)
                      ..+..+....++.+|||+|||+|.+++.++.  .+.+|+++|+++.+++.|++|++.+++.++++++++|+.+.+.
T Consensus        61 ~~l~~~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~  136 (232)
T 3ntv_A           61 DLIKQLIRMNNVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFE  136 (232)
T ss_dssp             HHHHHHHHHHTCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHH
T ss_pred             HHHHHHHhhcCCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHH
Confidence            3333334456788999999999999999998  4569999999999999999999999998779999999987654

>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}

Probab=98.94  E-value=2.4e-09  Score=107.29  Aligned_cols=98  Identities=20%  Similarity=0.264  Sum_probs=72.6

Q ss_pred             cEEEEEeCCeEEEEccCce--eec-ChH------HHHHH----HHHhccCCCCeEEEecCCcchhHHHHhhcCC------
Q 046527           58 MVTEVKQYGATFKLDYSLV--YWN-SRL------EHEHL----RIISQFRPGETICDMFAGIGPFAIPAAQKGC------  118 (380)
Q Consensus        58 ~~~~v~E~G~~F~id~~~f--f~n-~rl------~tE~~----r~i~~i~~g~~VLDlfcGvG~fsl~aA~~g~------  118 (380)
                      +...+.++.+.+.+|.+.-  +.- .|.      -.|.+    ..+..+.++..|+|+|||+|+|.+.+|..+.      
T Consensus       144 i~v~~~~~~~~~~ld~sg~~LhkRgyr~~~~~Apl~e~LAaall~l~~~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~  223 (384)
T 3ldg_A          144 IEISLLKDQARVMIDTTGPSLFKRGYRTEKGGAPIKENMAAAIILLSNWFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGF  223 (384)
T ss_dssp             EEEEEETTEEEEEEESSSSCTTCCSCCCC---CCCCHHHHHHHHHHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTT
T ss_pred             EEEEEECCEEEEEEeccCCcccccCcccCCCCCCCcHHHHHHHHHHhCCCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCc
Confidence            3445566778888886541  110 010      01222    2234567889999999999999999997543      


Q ss_pred             ----------------------------------EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHH
Q 046527          119 ----------------------------------IVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDARE  155 (380)
Q Consensus       119 ----------------------------------~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e  155 (380)
                                                        +|+|+|+++.+++.|++|++.+|+.+.+++.++|+.+
T Consensus       224 ~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~  294 (384)
T 3ldg_A          224 NRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDISGFDFDGRMVEIARKNAREVGLEDVVKLKQMRLQD  294 (384)
T ss_dssp             TCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCGGG
T ss_pred             cccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChHH
Confidence                                              4999999999999999999999999889999999864

>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}

Probab=98.94  E-value=9.7e-09  Score=105.62  Aligned_cols=65  Identities=20%  Similarity=0.255  Sum_probs=58.2

Q ss_pred             hccC--CCCeEEEecCCcchhHHHHhhc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHH
Q 046527           91 SQFR--PGETICDMFAGIGPFAIPAAQK---GCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREF  156 (380)
Q Consensus        91 ~~i~--~g~~VLDlfcGvG~fsl~aA~~---g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~  156 (380)
                      ....  +|++|||+|||+|..++.+|..   +..|+|+|+++.+++.+++|++.+++.+ ++++++|+.++
T Consensus       111 L~~~~~~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~~n-v~~~~~D~~~~  180 (479)
T 2frx_A          111 LFADGNAPQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGISN-VALTHFDGRVF  180 (479)
T ss_dssp             HTTTTCCCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTCCS-EEEECCCSTTH
T ss_pred             hCcccCCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCc-EEEEeCCHHHh
Confidence            3445  8999999999999999999985   3599999999999999999999999986 99999998765

>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*

Probab=98.94  E-value=7.9e-09  Score=106.01  Aligned_cols=80  Identities=18%  Similarity=0.245  Sum_probs=64.7

Q ss_pred             eecChHHHHHHHHHhccCCCCeEEEecCCcchhHHHHhhc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccH
Q 046527           77 YWNSRLEHEHLRIISQFRPGETICDMFAGIGPFAIPAAQK---GCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDA  153 (380)
Q Consensus        77 f~n~rl~tE~~r~i~~i~~g~~VLDlfcGvG~fsl~aA~~---g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da  153 (380)
                      |..+.........+....+|++|||+|||+|..++.+|..   ..+|+|+|+++.+++.+++|++.+|+.  +.++++|+
T Consensus        83 ~~vQd~ss~l~a~~L~~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~--v~~~~~Da  160 (464)
T 3m6w_A           83 YYIQEPSAQAVGVLLDPKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAP--LAVTQAPP  160 (464)
T ss_dssp             EEECCTTTHHHHHHHCCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCC--CEEECSCH
T ss_pred             EEEECHHHHHHHHhcCcCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCe--EEEEECCH
Confidence            3344433333333445778999999999999999999975   249999999999999999999999997  89999999


Q ss_pred             HHHHH
Q 046527          154 REFIR  158 (380)
Q Consensus       154 ~e~l~  158 (380)
                      .++..
T Consensus       161 ~~l~~  165 (464)
T 3m6w_A          161 RALAE  165 (464)
T ss_dssp             HHHHH
T ss_pred             HHhhh
Confidence            88653

>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20

Probab=98.94  E-value=5.7e-09  Score=96.27  Aligned_cols=62  Identities=23%  Similarity=0.247  Sum_probs=56.4

Q ss_pred             CCCCeEEEecCCcchhHHHHhh--cCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHH
Q 046527           94 RPGETICDMFAGIGPFAIPAAQ--KGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREF  156 (380)
Q Consensus        94 ~~g~~VLDlfcGvG~fsl~aA~--~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~  156 (380)
                      .++.+|||+|||+|.+++.++.  .+.+|+++|+++.+++.|++|++.+++.+ ++++++|+.++
T Consensus        69 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~  132 (240)
T 1xdz_A           69 NQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLEN-TTFCHDRAETF  132 (240)
T ss_dssp             GGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSS-EEEEESCHHHH
T ss_pred             CCCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCC-EEEEeccHHHh
Confidence            4788999999999999999995  46699999999999999999999999986 99999999764

>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*

Probab=98.92  E-value=7.9e-09  Score=96.98  Aligned_cols=62  Identities=16%  Similarity=0.113  Sum_probs=57.2

Q ss_pred             CCCCeEEEecCCcchhHHHHhhc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHH
Q 046527           94 RPGETICDMFAGIGPFAIPAAQK--GCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREF  156 (380)
Q Consensus        94 ~~g~~VLDlfcGvG~fsl~aA~~--g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~  156 (380)
                      .++.+|||+|||+|.+++.+|..  +.+|+++|+++.+++.|++|++.+++.+ ++++++|+.++
T Consensus        79 ~~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~l~~-v~~~~~d~~~~  142 (249)
T 3g89_A           79 QGPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGLKG-ARALWGRAEVL  142 (249)
T ss_dssp             CSSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSS-EEEEECCHHHH
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCc-eEEEECcHHHh
Confidence            46889999999999999999976  4699999999999999999999999987 99999999765

>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}

Probab=98.91  E-value=1.3e-08  Score=89.30  Aligned_cols=66  Identities=12%  Similarity=0.047  Sum_probs=50.2

Q ss_pred             cChHHHHHH-HHHhc-cCCCCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHH
Q 046527           79 NSRLEHEHL-RIISQ-FRPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDARE  155 (380)
Q Consensus        79 n~rl~tE~~-r~i~~-i~~g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e  155 (380)
                      .++..++.+ ..+.. ..++.+|||+|||+|.+++.+++.+ +|+|+|+|+.+++.          .++++++++|+.+
T Consensus         5 ~P~~~~~~l~~~l~~~~~~~~~vLD~GcG~G~~~~~l~~~~-~v~gvD~s~~~~~~----------~~~~~~~~~d~~~   72 (170)
T 3q87_B            5 EPGEDTYTLMDALEREGLEMKIVLDLGTSTGVITEQLRKRN-TVVSTDLNIRALES----------HRGGNLVRADLLC   72 (170)
T ss_dssp             CCCHHHHHHHHHHHHHTCCSCEEEEETCTTCHHHHHHTTTS-EEEEEESCHHHHHT----------CSSSCEEECSTTT
T ss_pred             CcCccHHHHHHHHHhhcCCCCeEEEeccCccHHHHHHHhcC-cEEEEECCHHHHhc----------ccCCeEEECChhh
Confidence            345455544 22222 1567899999999999999999999 99999999999987          2347788888653

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}

Probab=98.90  E-value=4.4e-09  Score=98.13  Aligned_cols=84  Identities=10%  Similarity=0.067  Sum_probs=70.2

Q ss_pred             ecChHHHHHHHHHhccCCCCeEEEecCCcchhHHHHhhc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHH
Q 046527           78 WNSRLEHEHLRIISQFRPGETICDMFAGIGPFAIPAAQK---GCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAR  154 (380)
Q Consensus        78 ~n~rl~tE~~r~i~~i~~g~~VLDlfcGvG~fsl~aA~~---g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~  154 (380)
                      .........+..+....++.+|||+|||+|..++.+|..   +++|+++|+++.+++.|++|++.+++.++++++.+|+.
T Consensus        43 ~i~~~~~~~l~~l~~~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~  122 (242)
T 3r3h_A           43 QVAPEQAQFMQMLIRLTRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPAL  122 (242)
T ss_dssp             SCCHHHHHHHHHHHHHHTCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHH
T ss_pred             ccCHHHHHHHHHHHhhcCcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHH
Confidence            344544455555555567789999999999999999984   56999999999999999999999999888999999999


Q ss_pred             HHHHHHh
Q 046527          155 EFIRQLM  161 (380)
Q Consensus       155 e~l~~l~  161 (380)
                      +.+..+.
T Consensus       123 ~~l~~~~  129 (242)
T 3r3h_A          123 DTLHSLL  129 (242)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            9887653

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*

Probab=98.90  E-value=1.9e-08  Score=94.04  Aligned_cols=83  Identities=14%  Similarity=0.097  Sum_probs=69.5

Q ss_pred             cChHHHHHHHHHhccCCCCeEEEecCCcchhHHHHhhc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHH
Q 046527           79 NSRLEHEHLRIISQFRPGETICDMFAGIGPFAIPAAQK---GCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDARE  155 (380)
Q Consensus        79 n~rl~tE~~r~i~~i~~g~~VLDlfcGvG~fsl~aA~~---g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e  155 (380)
                      ........+..+....++.+|||+|||+|..++.+++.   +.+|+++|+++.+++.|++|++.+++.++++++.+|+.+
T Consensus        63 ~~~~~~~ll~~l~~~~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~  142 (247)
T 1sui_A           63 TSADEGQFLSMLLKLINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALP  142 (247)
T ss_dssp             CCHHHHHHHHHHHHHTTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHH
T ss_pred             cCHHHHHHHHHHHHhhCcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHH
Confidence            34444444444445567789999999999999999986   579999999999999999999999998889999999999


Q ss_pred             HHHHHh
Q 046527          156 FIRQLM  161 (380)
Q Consensus       156 ~l~~l~  161 (380)
                      ++..+.
T Consensus       143 ~l~~l~  148 (247)
T 1sui_A          143 VLDEMI  148 (247)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            887664

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}

Probab=98.89  E-value=3.2e-08  Score=91.62  Aligned_cols=83  Identities=12%  Similarity=0.056  Sum_probs=69.5

Q ss_pred             cChHHHHHHHHHhccCCCCeEEEecCCcchhHHHHhhc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHH
Q 046527           79 NSRLEHEHLRIISQFRPGETICDMFAGIGPFAIPAAQK---GCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDARE  155 (380)
Q Consensus        79 n~rl~tE~~r~i~~i~~g~~VLDlfcGvG~fsl~aA~~---g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e  155 (380)
                      ........+..+....++.+|||+|||+|..++.+++.   +.+|+++|+++.+++.|++|++.+++.++++++.+|+.+
T Consensus        54 ~~~~~~~~l~~l~~~~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~  133 (237)
T 3c3y_A           54 TSPLAGQLMSFVLKLVNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAML  133 (237)
T ss_dssp             CCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHH
T ss_pred             cCHHHHHHHHHHHHhhCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHH
Confidence            34444444444445567889999999999999999986   579999999999999999999999998889999999999


Q ss_pred             HHHHHh
Q 046527          156 FIRQLM  161 (380)
Q Consensus       156 ~l~~l~  161 (380)
                      ++..+.
T Consensus       134 ~l~~l~  139 (237)
T 3c3y_A          134 ALDNLL  139 (237)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            887664

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=98.88  E-value=5e-09  Score=98.66  Aligned_cols=64  Identities=20%  Similarity=0.167  Sum_probs=57.4

Q ss_pred             ccCCCCeEEEecCCcchhHHHHhhc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHH
Q 046527           92 QFRPGETICDMFAGIGPFAIPAAQK---GCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDARE  155 (380)
Q Consensus        92 ~i~~g~~VLDlfcGvG~fsl~aA~~---g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e  155 (380)
                      .+.++.+|||+|||+|.+++.+++.   +.+|+++|+++.+++.|++|++.+++.++++++++|+.+
T Consensus       109 ~~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  175 (277)
T 1o54_A          109 DVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISE  175 (277)
T ss_dssp             TCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGG
T ss_pred             CCCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHH
Confidence            4567899999999999999999987   469999999999999999999999986679999888754

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=98.88  E-value=2.3e-08  Score=92.04  Aligned_cols=82  Identities=16%  Similarity=0.094  Sum_probs=67.8

Q ss_pred             ChHHHHHHHHHhccCCCCeEEEecCCcchhHHHHhhc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHH
Q 046527           80 SRLEHEHLRIISQFRPGETICDMFAGIGPFAIPAAQK---GCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREF  156 (380)
Q Consensus        80 ~rl~tE~~r~i~~i~~g~~VLDlfcGvG~fsl~aA~~---g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~  156 (380)
                      +......+..+....++.+|||+|||+|.+++.+++.   +++|+++|+++.+++.|++|++.+++.++++++.+|+.+.
T Consensus        57 ~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~  136 (232)
T 3cbg_A           57 SPEQAQFLGLLISLTGAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALAT  136 (232)
T ss_dssp             CHHHHHHHHHHHHHHTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHH
T ss_pred             CHHHHHHHHHHHHhcCCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHH
Confidence            3433344444444557789999999999999999986   4699999999999999999999999988899999999988


Q ss_pred             HHHHh
Q 046527          157 IRQLM  161 (380)
Q Consensus       157 l~~l~  161 (380)
                      +..+.
T Consensus       137 l~~l~  141 (232)
T 3cbg_A          137 LEQLT  141 (232)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            77654

>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*

Probab=98.88  E-value=2.5e-10  Score=109.31  Aligned_cols=90  Identities=14%  Similarity=0.103  Sum_probs=70.7

Q ss_pred             EEeCCeEEEEccCceeecChHHHHHHHHHhccCCCCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcC
Q 046527           62 VKQYGATFKLDYSLVYWNSRLEHEHLRIISQFRPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVNK  141 (380)
Q Consensus        62 v~E~G~~F~id~~~ff~n~rl~tE~~r~i~~i~~g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~lN~  141 (380)
                      ++++|++.+-.++.-|..+....+.+.....+.++ +|||+|||+|.++..++..+++|+|+|+++++++.+++++.   
T Consensus        14 ~~~~~~~~~k~~GQnfL~d~~i~~~Iv~~~~~~~~-~VLEIG~G~G~lt~~L~~~~~~V~avEid~~~~~~l~~~~~---   89 (271)
T 3fut_A           14 LERHGLFADKRFGQNFLVSEAHLRRIVEAARPFTG-PVFEVGPGLGALTRALLEAGAEVTAIEKDLRLRPVLEETLS---   89 (271)
T ss_dssp             HHHTTCCCSTTSSCCEECCHHHHHHHHHHHCCCCS-CEEEECCTTSHHHHHHHHTTCCEEEEESCGGGHHHHHHHTT---
T ss_pred             HHhcCCCccccCCccccCCHHHHHHHHHhcCCCCC-eEEEEeCchHHHHHHHHHcCCEEEEEECCHHHHHHHHHhcC---
Confidence            34466666666666666666444544334457788 99999999999999999999999999999999999999875   


Q ss_pred             CCCcEEEEeccHHHH
Q 046527          142 VDNYVRAYNMDAREF  156 (380)
Q Consensus       142 l~~ri~~~~~Da~e~  156 (380)
                       .++++++++|+.++
T Consensus        90 -~~~v~vi~~D~l~~  103 (271)
T 3fut_A           90 -GLPVRLVFQDALLY  103 (271)
T ss_dssp             -TSSEEEEESCGGGS
T ss_pred             -CCCEEEEECChhhC
Confidence             23599999998643

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=98.87  E-value=1.3e-08  Score=96.70  Aligned_cols=65  Identities=18%  Similarity=0.108  Sum_probs=59.7

Q ss_pred             ccCCCCeEEEecCCcchhHHHHhhc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHH
Q 046527           92 QFRPGETICDMFAGIGPFAIPAAQK-GCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREF  156 (380)
Q Consensus        92 ~i~~g~~VLDlfcGvG~fsl~aA~~-g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~  156 (380)
                      .+.++.+|||+|||+|.+++.+++. +++|+|+|+++.+++.|++++..+++.++++++.+|+.++
T Consensus        69 ~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~  134 (302)
T 3hem_A           69 NLEPGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF  134 (302)
T ss_dssp             CCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC
T ss_pred             CCCCcCEEEEeeccCcHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHHc
Confidence            3578899999999999999999988 8899999999999999999999999997899999998643

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=98.87  E-value=1.9e-08  Score=92.71  Aligned_cols=74  Identities=9%  Similarity=0.040  Sum_probs=61.9

Q ss_pred             HHHHHHhccCCCC---eEEEecCCcchhHHHHhhc---CCEEEEEeCCHHHHHHHHHHHHHcCCC-CcEEEEeccHHHHH
Q 046527           85 EHLRIISQFRPGE---TICDMFAGIGPFAIPAAQK---GCIVFANDLNPDSVHYLKINAKVNKVD-NYVRAYNMDAREFI  157 (380)
Q Consensus        85 E~~r~i~~i~~g~---~VLDlfcGvG~fsl~aA~~---g~~V~avDlnp~Aie~a~~Na~lN~l~-~ri~~~~~Da~e~l  157 (380)
                      ..+..+....+..   +|||+|||+|..++.+|+.   +++|+++|+++.+++.|++|++.+++. ++++++++|+.+++
T Consensus        43 ~~l~~l~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l  122 (221)
T 3dr5_A           43 QLLTTLAATTNGNGSTGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVM  122 (221)
T ss_dssp             HHHHHHHHHSCCTTCCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHG
T ss_pred             HHHHHHHHhhCCCCCCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHH
Confidence            3344444344444   9999999999999999975   569999999999999999999999998 78999999998875


Q ss_pred             H
Q 046527          158 R  158 (380)
Q Consensus       158 ~  158 (380)
                      .
T Consensus       123 ~  123 (221)
T 3dr5_A          123 S  123 (221)
T ss_dssp             G
T ss_pred             H
Confidence            3

>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24

Probab=98.85  E-value=4.8e-09  Score=100.34  Aligned_cols=80  Identities=18%  Similarity=0.184  Sum_probs=64.0

Q ss_pred             ceeecChHHHHHHHHHhccCCCCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHH
Q 046527           75 LVYWNSRLEHEHLRIISQFRPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAR  154 (380)
Q Consensus        75 ~ff~n~rl~tE~~r~i~~i~~g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~  154 (380)
                      .-|+.+....+.+.....+.++++|||+|||+|.++..++..+.+|+|+|+++.+++.+++++..+++.++++++++|+.
T Consensus         8 q~fl~d~~i~~~i~~~~~~~~~~~VLDiG~G~G~lt~~L~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D~~   87 (285)
T 1zq9_A            8 QHILKNPLIINSIIDKAALRPTDVVLEVGPGTGNMTVKLLEKAKKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVL   87 (285)
T ss_dssp             CCEECCHHHHHHHHHHTCCCTTCEEEEECCTTSTTHHHHHHHSSEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTT
T ss_pred             cCccCCHHHHHHHHHhcCCCCCCEEEEEcCcccHHHHHHHhhCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEccee
Confidence            34444443333333334567889999999999999999999999999999999999999999987777556999998875

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=98.85  E-value=1.7e-08  Score=92.17  Aligned_cols=80  Identities=16%  Similarity=0.105  Sum_probs=65.4

Q ss_pred             ChHHHHHHHHHhccCCCCeEEEecCCcchhHHHHhhc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHHH
Q 046527           80 SRLEHEHLRIISQFRPGETICDMFAGIGPFAIPAAQK--GCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFI  157 (380)
Q Consensus        80 ~rl~tE~~r~i~~i~~g~~VLDlfcGvG~fsl~aA~~--g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~l  157 (380)
                      ++.....+..+....++.+|||+|||+|.+++.+++.  +.+|+++|+++.+++.|++|+..+++.++++++++|+.+.+
T Consensus        39 ~~~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~  118 (233)
T 2gpy_A           39 DLLGMESLLHLLKMAAPARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLG  118 (233)
T ss_dssp             CHHHHHHHHHHHHHHCCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSH
T ss_pred             CHHHHHHHHHHHhccCCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHH
Confidence            3333333333344567889999999999999999987  57999999999999999999999999878999999998765


Q ss_pred             HH
Q 046527          158 RQ  159 (380)
Q Consensus       158 ~~  159 (380)
                      ..
T Consensus       119 ~~  120 (233)
T 2gpy_A          119 EK  120 (233)
T ss_dssp             HH
T ss_pred             Hh
Confidence            43

>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}

Probab=98.85  E-value=3e-09  Score=106.41  Aligned_cols=63  Identities=22%  Similarity=0.247  Sum_probs=58.2

Q ss_pred             cCCCCeEEEecCCcchhHHHHhhcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHH
Q 046527           93 FRPGETICDMFAGIGPFAIPAAQKGC-IVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREF  156 (380)
Q Consensus        93 i~~g~~VLDlfcGvG~fsl~aA~~g~-~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~  156 (380)
                      ..+|++|||+|||+|.+++.+|+.|+ +|+|+|.++ +++.|+++++.|++.++|+++++|++++
T Consensus        81 ~~~~k~VLDvG~GtGiLs~~Aa~aGA~~V~ave~s~-~~~~a~~~~~~n~~~~~i~~i~~~~~~~  144 (376)
T 4hc4_A           81 ALRGKTVLDVGAGTGILSIFCAQAGARRVYAVEASA-IWQQAREVVRFNGLEDRVHVLPGPVETV  144 (376)
T ss_dssp             HHTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-THHHHHHHHHHTTCTTTEEEEESCTTTC
T ss_pred             hcCCCEEEEeCCCccHHHHHHHHhCCCEEEEEeChH-HHHHHHHHHHHcCCCceEEEEeeeeeee
Confidence            35799999999999999999999987 899999997 7899999999999999999999998764

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=98.85  E-value=4.7e-08  Score=89.87  Aligned_cols=82  Identities=17%  Similarity=0.118  Sum_probs=68.1

Q ss_pred             ChHHHHHHHHHhccCCCCeEEEecCCcchhHHHHhhc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHH
Q 046527           80 SRLEHEHLRIISQFRPGETICDMFAGIGPFAIPAAQK---GCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREF  156 (380)
Q Consensus        80 ~rl~tE~~r~i~~i~~g~~VLDlfcGvG~fsl~aA~~---g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~  156 (380)
                      ++.....+..+....++.+|||+|||+|.+++.+++.   +.+|+++|+++.+++.|++|++.+++.++++++.+|+.+.
T Consensus        45 ~~~~~~~l~~l~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~  124 (239)
T 2hnk_A           45 SPEEGQFLNILTKISGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALET  124 (239)
T ss_dssp             CHHHHHHHHHHHHHHTCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHH
T ss_pred             CHHHHHHHHHHHHhhCcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHH
Confidence            3333344444444567889999999999999999987   5699999999999999999999999988899999999988


Q ss_pred             HHHHh
Q 046527          157 IRQLM  161 (380)
Q Consensus       157 l~~l~  161 (380)
                      +..+.
T Consensus       125 ~~~~~  129 (239)
T 2hnk_A          125 LQVLI  129 (239)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            76653

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...

Probab=98.84  E-value=6.6e-09  Score=94.53  Aligned_cols=76  Identities=17%  Similarity=0.201  Sum_probs=65.0

Q ss_pred             HHHHHHhccCCCCeEEEecCCcchhHHHHhhc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHHHHHH
Q 046527           85 EHLRIISQFRPGETICDMFAGIGPFAIPAAQK---GCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFIRQL  160 (380)
Q Consensus        85 E~~r~i~~i~~g~~VLDlfcGvG~fsl~aA~~---g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~l~~l  160 (380)
                      ..+..+....++.+|||+|||+|.+++.+|+.   +++|+++|+++.+++.|++|++.+++.++++++++|+.+++..+
T Consensus        48 ~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~  126 (221)
T 3u81_A           48 QIMDAVIREYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQL  126 (221)
T ss_dssp             HHHHHHHHHHCCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGT
T ss_pred             HHHHHHHHhcCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHH
Confidence            33333444557889999999999999999984   56999999999999999999999999888999999999876544

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=98.84  E-value=1.2e-08  Score=93.83  Aligned_cols=64  Identities=19%  Similarity=0.203  Sum_probs=56.3

Q ss_pred             hccCCCCeEEEecCCcchhHHHHhhc---CCEEEEEeCCHHHHHHHHHHHHHc-CCCCcEEEEeccHHH
Q 046527           91 SQFRPGETICDMFAGIGPFAIPAAQK---GCIVFANDLNPDSVHYLKINAKVN-KVDNYVRAYNMDARE  155 (380)
Q Consensus        91 ~~i~~g~~VLDlfcGvG~fsl~aA~~---g~~V~avDlnp~Aie~a~~Na~lN-~l~~ri~~~~~Da~e  155 (380)
                      ..+.++.+|||+|||+|.+++.+++.   +.+|+++|+++.+++.|++|++.+ +. ++++++++|+.+
T Consensus        92 ~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~-~~v~~~~~d~~~  159 (258)
T 2pwy_A           92 LDLAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQV-ENVRFHLGKLEE  159 (258)
T ss_dssp             TTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCC-CCEEEEESCGGG
T ss_pred             cCCCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCC-CCEEEEECchhh
Confidence            35678999999999999999999987   569999999999999999999988 74 459999988753

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}

Probab=98.83  E-value=1.9e-08  Score=90.46  Aligned_cols=71  Identities=15%  Similarity=0.059  Sum_probs=61.2

Q ss_pred             HHHHhccCCCCeEEEecCCcchhHHHHhhc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHHH
Q 046527           87 LRIISQFRPGETICDMFAGIGPFAIPAAQK---GCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFI  157 (380)
Q Consensus        87 ~r~i~~i~~g~~VLDlfcGvG~fsl~aA~~---g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~l  157 (380)
                      +..+....++.+|||+|||+|.+++.+++.   +.+|+++|+++.+++.|++|++.+++.++++++++|+.+.+
T Consensus        48 l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~  121 (210)
T 3c3p_A           48 LYLLARIKQPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIA  121 (210)
T ss_dssp             HHHHHHHHCCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHH
T ss_pred             HHHHHHhhCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHh
Confidence            333333456789999999999999999986   56999999999999999999999999888999999998754

>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A

Probab=98.83  E-value=5e-08  Score=88.60  Aligned_cols=60  Identities=17%  Similarity=0.216  Sum_probs=52.4

Q ss_pred             cCCCCeEEEecCCcchhHHHHhhc-C--CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHH
Q 046527           93 FRPGETICDMFAGIGPFAIPAAQK-G--CIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDARE  155 (380)
Q Consensus        93 i~~g~~VLDlfcGvG~fsl~aA~~-g--~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e  155 (380)
                      +.++.+|||+|||+|.+++.+++. +  .+|+++|+++.+++.+++|++.+   .+++++++|+.+
T Consensus        71 ~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~---~~v~~~~~d~~~  133 (227)
T 1g8a_A           71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEER---RNIVPILGDATK  133 (227)
T ss_dssp             CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSC---TTEEEEECCTTC
T ss_pred             CCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhcc---CCCEEEEccCCC
Confidence            567899999999999999999976 3  69999999999999999999765   358999988754

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=98.81  E-value=1.8e-08  Score=92.09  Aligned_cols=63  Identities=13%  Similarity=0.166  Sum_probs=57.0

Q ss_pred             ccCCCCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHH
Q 046527           92 QFRPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAR  154 (380)
Q Consensus        92 ~i~~g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~  154 (380)
                      .+.++++|||+|||+|.+++.+++.+.+|+++|+++.+++.|++|++.+++.++++++.+|+.
T Consensus        88 ~~~~~~~vldiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~  150 (248)
T 2yvl_A           88 NLNKEKRVLEFGTGSGALLAVLSEVAGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFK  150 (248)
T ss_dssp             TCCTTCEEEEECCTTSHHHHHHHHHSSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTT
T ss_pred             CCCCCCEEEEeCCCccHHHHHHHHhCCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChh
Confidence            456889999999999999999998877999999999999999999999998666888887764

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=98.79  E-value=8.7e-08  Score=87.71  Aligned_cols=60  Identities=18%  Similarity=0.122  Sum_probs=52.4

Q ss_pred             cCCCCeEEEecCCcchhHHHHhhc-C-CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHH
Q 046527           93 FRPGETICDMFAGIGPFAIPAAQK-G-CIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDARE  155 (380)
Q Consensus        93 i~~g~~VLDlfcGvG~fsl~aA~~-g-~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e  155 (380)
                      +.++.+|||+|||+|.+++.+++. + .+|+|+|+++.+++.|++|++.+   +++.++.+|+.+
T Consensus        72 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~---~~v~~~~~d~~~  133 (230)
T 1fbn_A           72 IKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAER---ENIIPILGDANK  133 (230)
T ss_dssp             CCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTC---TTEEEEECCTTC
T ss_pred             CCCCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcC---CCeEEEECCCCC
Confidence            467899999999999999999987 4 69999999999999999998765   358999888754

>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}

Probab=98.79  E-value=2.4e-07  Score=84.63  Aligned_cols=60  Identities=22%  Similarity=0.193  Sum_probs=52.7

Q ss_pred             cCCCCeEEEecCCcchhHHHHhhc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHH
Q 046527           93 FRPGETICDMFAGIGPFAIPAAQK---GCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDARE  155 (380)
Q Consensus        93 i~~g~~VLDlfcGvG~fsl~aA~~---g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e  155 (380)
                      +.++.+|||+|||+|.++..+++.   +.+|+|+|+++.+++.+.++++.+   .+++++++|+.+
T Consensus        75 ~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~---~~v~~~~~d~~~  137 (233)
T 2ipx_A           75 IKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKR---TNIIPVIEDARH  137 (233)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHC---TTEEEECSCTTC
T ss_pred             CCCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhcc---CCeEEEEcccCC
Confidence            567899999999999999999987   269999999999999999999887   348999888764

>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}

Probab=98.79  E-value=3.5e-08  Score=91.77  Aligned_cols=64  Identities=9%  Similarity=0.231  Sum_probs=54.4

Q ss_pred             CCCCeEEEecCCcchhHHHHhhc--CCEEEEEeCCHHHHHHHHHHHHH------cCCCCcEEEEeccHHHHHH
Q 046527           94 RPGETICDMFAGIGPFAIPAAQK--GCIVFANDLNPDSVHYLKINAKV------NKVDNYVRAYNMDAREFIR  158 (380)
Q Consensus        94 ~~g~~VLDlfcGvG~fsl~aA~~--g~~V~avDlnp~Aie~a~~Na~l------N~l~~ri~~~~~Da~e~l~  158 (380)
                      .++.+|||+|||+|.+++.+|+.  +..|+|+|+++.+++.|+++++.      +++.+ ++++++|+.+.+.
T Consensus        45 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~n-v~~~~~d~~~~l~  116 (235)
T 3ckk_A           45 QAQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQN-IACLRSNAMKHLP  116 (235)
T ss_dssp             -CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTT-EEEEECCTTTCHH
T ss_pred             CCCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCe-EEEEECcHHHhhh
Confidence            45679999999999999999987  45999999999999999999864      45665 9999999987554

>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}

Probab=98.79  E-value=1.6e-08  Score=100.12  Aligned_cols=60  Identities=12%  Similarity=0.111  Sum_probs=54.6

Q ss_pred             CCCCeEEEecCCcchhHHHHhhcC--CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHH
Q 046527           94 RPGETICDMFAGIGPFAIPAAQKG--CIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDARE  155 (380)
Q Consensus        94 ~~g~~VLDlfcGvG~fsl~aA~~g--~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e  155 (380)
                      .++.+|||+| |+|.+++.++..+  .+|+++|+++.+++.|++|++.+++. +++++++|+.+
T Consensus       171 ~~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g~~-~v~~~~~D~~~  232 (373)
T 2qm3_A          171 LENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIGYE-DIEIFTFDLRK  232 (373)
T ss_dssp             STTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHTCC-CEEEECCCTTS
T ss_pred             CCCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC-CEEEEEChhhh
Confidence            3688999999 9999999999876  49999999999999999999999998 59999998864

>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}

Probab=98.79  E-value=1.3e-08  Score=98.02  Aligned_cols=90  Identities=11%  Similarity=0.117  Sum_probs=62.1

Q ss_pred             CCeEEEEccCceeecChHHHHHHHHHhccCCCCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCC
Q 046527           65 YGATFKLDYSLVYWNSRLEHEHLRIISQFRPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKVDN  144 (380)
Q Consensus        65 ~G~~F~id~~~ff~n~rl~tE~~r~i~~i~~g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~lN~l~~  144 (380)
                      ++-.++-.++.-|+.++...+.+.....+.++++|||+|||+|.++..++..+++|+|+|+++.+++.|++|+..+++.+
T Consensus        12 ~~~~~~k~~Gq~fl~~~~i~~~i~~~~~~~~~~~VLDiG~G~G~lt~~La~~~~~v~~vDi~~~~~~~a~~~~~~~~~~~   91 (299)
T 2h1r_A           12 SGRENLYFQGQHLLKNPGILDKIIYAAKIKSSDIVLEIGCGTGNLTVKLLPLAKKVITIDIDSRMISEVKKRCLYEGYNN   91 (299)
T ss_dssp             -----------CEECCHHHHHHHHHHHCCCTTCEEEEECCTTSTTHHHHTTTSSEEEEECSCHHHHHHHHHHHHHTTCCC
T ss_pred             ccccchhccccceecCHHHHHHHHHhcCCCCcCEEEEEcCcCcHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHcCCCc
Confidence            44455555666666666444444334456788999999999999999999998899999999999999999999888854


Q ss_pred             cEEEEeccHHH
Q 046527          145 YVRAYNMDARE  155 (380)
Q Consensus       145 ri~~~~~Da~e  155 (380)
                       ++++++|+.+
T Consensus        92 -v~~~~~D~~~  101 (299)
T 2h1r_A           92 -LEVYEGDAIK  101 (299)
T ss_dssp             -EEC----CCS
T ss_pred             -eEEEECchhh
Confidence             8999888753

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13

Probab=98.78  E-value=8.7e-09  Score=97.17  Aligned_cols=63  Identities=19%  Similarity=0.193  Sum_probs=56.0

Q ss_pred             ccCCCCeEEEecCCcchhHHHHhhc---CCEEEEEeCCHHHHHHHHHHHHHc-CCCCcEEEEeccHHH
Q 046527           92 QFRPGETICDMFAGIGPFAIPAAQK---GCIVFANDLNPDSVHYLKINAKVN-KVDNYVRAYNMDARE  155 (380)
Q Consensus        92 ~i~~g~~VLDlfcGvG~fsl~aA~~---g~~V~avDlnp~Aie~a~~Na~lN-~l~~ri~~~~~Da~e  155 (380)
                      .+.++.+|||+|||+|.+++.+++.   +.+|+++|+++.+++.|++|++.+ +..+ ++++++|+.+
T Consensus       107 ~~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~~~-v~~~~~d~~~  173 (275)
T 1yb2_A          107 GLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGN-VRTSRSDIAD  173 (275)
T ss_dssp             CCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTT-EEEECSCTTT
T ss_pred             CCCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCCCc-EEEEECchhc
Confidence            4678899999999999999999987   679999999999999999999998 8654 8999888753

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}

Probab=98.78  E-value=3.3e-08  Score=92.89  Aligned_cols=60  Identities=17%  Similarity=0.153  Sum_probs=55.4

Q ss_pred             CCCCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHH
Q 046527           94 RPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDARE  155 (380)
Q Consensus        94 ~~g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e  155 (380)
                      .++.+|||+|||+|.+++.+++.|.+|+|+|+++.+++.+++++..+++  +++++++|+.+
T Consensus       119 ~~~~~vLD~GcG~G~~~~~l~~~g~~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~  178 (286)
T 3m70_A          119 ISPCKVLDLGCGQGRNSLYLSLLGYDVTSWDHNENSIAFLNETKEKENL--NISTALYDINA  178 (286)
T ss_dssp             SCSCEEEEESCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCGGG
T ss_pred             cCCCcEEEECCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHcCC--ceEEEEecccc
Confidence            3788999999999999999999999999999999999999999999998  48999988753

>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*

Probab=98.76  E-value=1.8e-08  Score=97.81  Aligned_cols=76  Identities=16%  Similarity=0.225  Sum_probs=62.5

Q ss_pred             cChHHHHHHHHHhccCCCCeEEEecCCcchhHHHHhhc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHH
Q 046527           79 NSRLEHEHLRIISQFRPGETICDMFAGIGPFAIPAAQK--GCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREF  156 (380)
Q Consensus        79 n~rl~tE~~r~i~~i~~g~~VLDlfcGvG~fsl~aA~~--g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~  156 (380)
                      .+.+..+.+..+ .+.++.+|||+|||+|.+++.+++.  +.+|+|+|+|+.+++.|++|++.++  ++++++++|+.++
T Consensus        11 ~pvLl~e~l~~L-~~~~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~g--~~v~~v~~d~~~l   87 (301)
T 1m6y_A           11 IPVMVREVIEFL-KPEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFS--DRVSLFKVSYREA   87 (301)
T ss_dssp             CCTTHHHHHHHH-CCCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGT--TTEEEEECCGGGH
T ss_pred             cHHHHHHHHHhc-CCCCCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEECCHHHH
Confidence            444444444433 3568899999999999999999987  4699999999999999999999887  4699999998765


Q ss_pred             H
Q 046527          157 I  157 (380)
Q Consensus       157 l  157 (380)
                      -
T Consensus        88 ~   88 (301)
T 1m6y_A           88 D   88 (301)
T ss_dssp             H
T ss_pred             H
Confidence            4

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=98.76  E-value=3.8e-08  Score=88.00  Aligned_cols=76  Identities=12%  Similarity=0.026  Sum_probs=63.8

Q ss_pred             cChHHHHHHHHHhccCCCCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHH
Q 046527           79 NSRLEHEHLRIISQFRPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDARE  155 (380)
Q Consensus        79 n~rl~tE~~r~i~~i~~g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e  155 (380)
                      ........+.....+.++.+|||+|||+|.+++.+++.+.+|+++|+++.+++.|++|+..+++.+ ++++++|+.+
T Consensus        61 ~~~~~~~~~~~~l~~~~~~~vLdiG~G~G~~~~~la~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~-v~~~~~d~~~  136 (210)
T 3lbf_A           61 SQPYMVARMTELLELTPQSRVLEIGTGSGYQTAILAHLVQHVCSVERIKGLQWQARRRLKNLDLHN-VSTRHGDGWQ  136 (210)
T ss_dssp             CCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHSSEEEEEESCHHHHHHHHHHHHHTTCCS-EEEEESCGGG
T ss_pred             CCHHHHHHHHHhcCCCCCCEEEEEcCCCCHHHHHHHHhCCEEEEEecCHHHHHHHHHHHHHcCCCc-eEEEECCccc
Confidence            344333333333456789999999999999999999998899999999999999999999999885 9999999875

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=98.76  E-value=3.1e-08  Score=92.66  Aligned_cols=65  Identities=15%  Similarity=0.168  Sum_probs=56.2

Q ss_pred             hccCCCCeEEEecCCcchhHHHHhhc---CCEEEEEeCCHHHHHHHHHHHHHc-C-CCCcEEEEeccHHH
Q 046527           91 SQFRPGETICDMFAGIGPFAIPAAQK---GCIVFANDLNPDSVHYLKINAKVN-K-VDNYVRAYNMDARE  155 (380)
Q Consensus        91 ~~i~~g~~VLDlfcGvG~fsl~aA~~---g~~V~avDlnp~Aie~a~~Na~lN-~-l~~ri~~~~~Da~e  155 (380)
                      ..+.++.+|||+|||+|.+++.+++.   +.+|+++|+++.+++.|++|++.+ + +.++++++++|+.+
T Consensus        95 ~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~  164 (280)
T 1i9g_A           95 GDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLAD  164 (280)
T ss_dssp             TTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGG
T ss_pred             cCCCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHh
Confidence            35678999999999999999999985   569999999999999999999987 5 44459999888754

>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A

Probab=98.76  E-value=4.5e-09  Score=100.00  Aligned_cols=67  Identities=18%  Similarity=0.198  Sum_probs=55.9

Q ss_pred             ccCCC--CeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHHHHHH-------cC-CCCcEEEEeccHHHHHH
Q 046527           92 QFRPG--ETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKV-------NK-VDNYVRAYNMDAREFIR  158 (380)
Q Consensus        92 ~i~~g--~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~l-------N~-l~~ri~~~~~Da~e~l~  158 (380)
                      .+.+|  .+|||+|||+|.+++.+|..|++|+++|+++.+++.+++|++.       |+ +.++++++++|+.++++
T Consensus        83 ~l~~g~~~~VLDl~~G~G~dal~lA~~g~~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~~~~L~  159 (258)
T 2oyr_A           83 GIKGDYLPDVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALT  159 (258)
T ss_dssp             TCBTTBCCCEEETTCTTCHHHHHHHHHTCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHST
T ss_pred             cccCCCCCEEEEcCCcCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCHHHHHH
Confidence            44667  8999999999999999999999999999999887777777643       34 44569999999988753

>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*

Probab=98.75  E-value=1.6e-08  Score=95.71  Aligned_cols=64  Identities=19%  Similarity=0.341  Sum_probs=58.1

Q ss_pred             ccCCCCeEEEecCCcchhHHHHhhc----CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHH
Q 046527           92 QFRPGETICDMFAGIGPFAIPAAQK----GCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDARE  155 (380)
Q Consensus        92 ~i~~g~~VLDlfcGvG~fsl~aA~~----g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e  155 (380)
                      .+++|.+|||+|||+|.+++.+++.    +++|+|+|+++.+++.|++++...+...+++++++|+.+
T Consensus        67 ~~~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~  134 (261)
T 4gek_A           67 FVQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRD  134 (261)
T ss_dssp             HCCTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTT
T ss_pred             hCCCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeeccccc
Confidence            3678999999999999999999975    469999999999999999999988888789999999864

>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}

Probab=98.73  E-value=4.4e-08  Score=99.52  Aligned_cols=77  Identities=23%  Similarity=0.207  Sum_probs=61.9

Q ss_pred             eecChHHHHHHHHHhccCCCCeEEEecCCcchhHHHHhhc--C-CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccH
Q 046527           77 YWNSRLEHEHLRIISQFRPGETICDMFAGIGPFAIPAAQK--G-CIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDA  153 (380)
Q Consensus        77 f~n~rl~tE~~r~i~~i~~g~~VLDlfcGvG~fsl~aA~~--g-~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da  153 (380)
                      |+.+.........+....+|++|||+|||.|..++.++..  + .+|+|+|+++.+++.+++|++.+++.+ ++++++|+
T Consensus       241 ~~~qd~~s~l~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~~-v~~~~~D~  319 (450)
T 2yxl_A          241 IIVQEEASAVASIVLDPKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIKI-VKPLVKDA  319 (450)
T ss_dssp             EEECCHHHHHHHHHHCCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCCS-EEEECSCT
T ss_pred             EEecCchhHHHHHhcCCCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCc-EEEEEcCh
Confidence            3344433333333346788999999999999999999975  3 699999999999999999999999976 89998886


Q ss_pred             H
Q 046527          154 R  154 (380)
Q Consensus       154 ~  154 (380)
                      .
T Consensus       320 ~  320 (450)
T 2yxl_A          320 R  320 (450)
T ss_dssp             T
T ss_pred             h
Confidence            4

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32

Probab=98.72  E-value=3.2e-08  Score=88.17  Aligned_cols=57  Identities=28%  Similarity=0.255  Sum_probs=50.1

Q ss_pred             cCCCCeEEEecCCcchhHHHHhhcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHH
Q 046527           93 FRPGETICDMFAGIGPFAIPAAQKGC-IVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDARE  155 (380)
Q Consensus        93 i~~g~~VLDlfcGvG~fsl~aA~~g~-~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e  155 (380)
                      ..++.+|||+|||+|.+++.++..+. +|+|+|+++.+++.|++|+.      +++++++|+.+
T Consensus        49 ~~~~~~vlD~gcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~------~~~~~~~d~~~  106 (200)
T 1ne2_A           49 NIGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCG------GVNFMVADVSE  106 (200)
T ss_dssp             SSBTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHCT------TSEEEECCGGG
T ss_pred             CCCCCEEEEEeCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHhcC------CCEEEECcHHH
Confidence            45788999999999999999998876 79999999999999999975      37888888754

>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A

Probab=98.72  E-value=7.3e-08  Score=97.14  Aligned_cols=78  Identities=17%  Similarity=0.033  Sum_probs=62.4

Q ss_pred             eecChHHHHHHHHHhccCCCCeEEEecCCcchhHHHHhhcC--CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHH
Q 046527           77 YWNSRLEHEHLRIISQFRPGETICDMFAGIGPFAIPAAQKG--CIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAR  154 (380)
Q Consensus        77 f~n~rl~tE~~r~i~~i~~g~~VLDlfcGvG~fsl~aA~~g--~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~  154 (380)
                      |+.+.........+....+|++|||+|||.|.+++.++..+  .+|+|+|+++..++.+++|++.+++.  ++++++|+.
T Consensus       228 ~~~qd~~s~~~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g~~--~~~~~~D~~  305 (429)
T 1sqg_A          228 VTVQDASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMK--ATVKQGDGR  305 (429)
T ss_dssp             EEECCHHHHTHHHHHCCCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCC--CEEEECCTT
T ss_pred             eEeeCHHHHHHHHHcCCCCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcCCC--eEEEeCchh
Confidence            33344333333334456789999999999999999999875  59999999999999999999999984  688999886


Q ss_pred             HH
Q 046527          155 EF  156 (380)
Q Consensus       155 e~  156 (380)
                      +.
T Consensus       306 ~~  307 (429)
T 1sqg_A          306 YP  307 (429)
T ss_dssp             CT
T ss_pred             hc
Confidence            54

>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A

Probab=98.71  E-value=1.2e-08  Score=94.59  Aligned_cols=46  Identities=20%  Similarity=0.137  Sum_probs=42.1

Q ss_pred             CCCeEEEecCCcchhHHHHhhc----CCEEEEEeCCHHHHHHHHHHHHHc
Q 046527           95 PGETICDMFAGIGPFAIPAAQK----GCIVFANDLNPDSVHYLKINAKVN  140 (380)
Q Consensus        95 ~g~~VLDlfcGvG~fsl~aA~~----g~~V~avDlnp~Aie~a~~Na~lN  140 (380)
                      ++.+|||+|||+|.+++.++..    +.+|+|+|+|+.+++.|++|+..+
T Consensus        51 ~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~  100 (250)
T 1o9g_A           51 GPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALL  100 (250)
T ss_dssp             SCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTT
T ss_pred             CCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHh
Confidence            5679999999999999999976    459999999999999999999876

>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*

Probab=98.71  E-value=2.4e-07  Score=90.27  Aligned_cols=92  Identities=18%  Similarity=0.178  Sum_probs=67.8

Q ss_pred             CCeEEEEccCceeecChHH----HHHHHH--HhccCCCCeEEEecCCcchhHHHHhhc--CCEEEEEeCCHHHHHHHHHH
Q 046527           65 YGATFKLDYSLVYWNSRLE----HEHLRI--ISQFRPGETICDMFAGIGPFAIPAAQK--GCIVFANDLNPDSVHYLKIN  136 (380)
Q Consensus        65 ~G~~F~id~~~ff~n~rl~----tE~~r~--i~~i~~g~~VLDlfcGvG~fsl~aA~~--g~~V~avDlnp~Aie~a~~N  136 (380)
                      .|..+.+|.  ..+.++..    +|.+..  +.....+.+|||+|||+|.++..+++.  +.+|+++|+++.+++.|++|
T Consensus        82 ~g~~l~ldg--~~~~~~~de~~y~e~l~~~~l~~~~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~  159 (321)
T 2pt6_A           82 YGKVLVLDG--VIQLTEKDEFAYHEMMTHVPMTVSKEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIY  159 (321)
T ss_dssp             SCEEEEETT--EEEEETTTHHHHHHHHHHHHHHHSSSCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHH
T ss_pred             CcEEEEECC--EeeeCcccchHHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHH
Confidence            466776664  33433322    343322  122356789999999999999999987  45999999999999999999


Q ss_pred             HHH--cCC-CCcEEEEeccHHHHHH
Q 046527          137 AKV--NKV-DNYVRAYNMDAREFIR  158 (380)
Q Consensus       137 a~l--N~l-~~ri~~~~~Da~e~l~  158 (380)
                      +..  +++ ..+++++++|+.+++.
T Consensus       160 ~~~~~~~~~~~~v~~~~~D~~~~l~  184 (321)
T 2pt6_A          160 FKNISCGYEDKRVNVFIEDASKFLE  184 (321)
T ss_dssp             CTTTSGGGGSTTEEEEESCHHHHHH
T ss_pred             HHhhccccCCCcEEEEEccHHHHHh
Confidence            875  344 3579999999998764

>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38

Probab=98.71  E-value=2.7e-08  Score=96.74  Aligned_cols=65  Identities=18%  Similarity=0.117  Sum_probs=58.2

Q ss_pred             HhccCCCCeEEEecCCcchhHHHHhhc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHH
Q 046527           90 ISQFRPGETICDMFAGIGPFAIPAAQK---GCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDARE  155 (380)
Q Consensus        90 i~~i~~g~~VLDlfcGvG~fsl~aA~~---g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e  155 (380)
                      +..+.+|++|||+|||.|..++.+|..   ..+|+|+|+++.+++.+++|++.+++.+ ++++++|+.+
T Consensus        97 ~l~~~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~~~-v~~~~~D~~~  164 (309)
T 2b9e_A           97 LLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSC-CELAEEDFLA  164 (309)
T ss_dssp             HHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCS-EEEEECCGGG
T ss_pred             HhCCCCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCe-EEEEeCChHh
Confidence            345788999999999999999999974   2599999999999999999999999976 9999999764

>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3

Probab=98.70  E-value=3.1e-07  Score=83.77  Aligned_cols=59  Identities=17%  Similarity=0.131  Sum_probs=48.5

Q ss_pred             cCCCCeEEEecCCcchhHHHHhhcC--CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHH
Q 046527           93 FRPGETICDMFAGIGPFAIPAAQKG--CIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAR  154 (380)
Q Consensus        93 i~~g~~VLDlfcGvG~fsl~aA~~g--~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~  154 (380)
                      +.+|.+|||+|||+|.++..+++..  .+|+|+|+++.+++.+.+.++..  . ++.++.+|+.
T Consensus        55 ~~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~~--~-~v~~~~~d~~  115 (210)
T 1nt2_A           55 LRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRER--N-NIIPLLFDAS  115 (210)
T ss_dssp             CCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHC--S-SEEEECSCTT
T ss_pred             CCCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhcC--C-CeEEEEcCCC
Confidence            5688999999999999999998864  59999999999998887776643  2 3777777664

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=98.70  E-value=9.1e-08  Score=91.38  Aligned_cols=62  Identities=15%  Similarity=0.112  Sum_probs=57.2

Q ss_pred             cCCCCeEEEecCCcchhHHHHhhc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHH
Q 046527           93 FRPGETICDMFAGIGPFAIPAAQK-GCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAR  154 (380)
Q Consensus        93 i~~g~~VLDlfcGvG~fsl~aA~~-g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~  154 (380)
                      +.++.+|||+|||+|.+++.+++. +++|+++|+++.+++.+++++..+++.++++++++|+.
T Consensus        88 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~  150 (318)
T 2fk8_A           88 LKPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWE  150 (318)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGG
T ss_pred             CCCcCEEEEEcccchHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChH
Confidence            467899999999999999999987 88999999999999999999999998878999988874

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=98.69  E-value=8.9e-08  Score=92.77  Aligned_cols=66  Identities=21%  Similarity=0.265  Sum_probs=56.0

Q ss_pred             hccCCCCeEEEecCCcchhHHHHhhc-C--CEEEEEeCCHHHHHHHHHHHHH-------cCC---CCcEEEEeccHHHH
Q 046527           91 SQFRPGETICDMFAGIGPFAIPAAQK-G--CIVFANDLNPDSVHYLKINAKV-------NKV---DNYVRAYNMDAREF  156 (380)
Q Consensus        91 ~~i~~g~~VLDlfcGvG~fsl~aA~~-g--~~V~avDlnp~Aie~a~~Na~l-------N~l---~~ri~~~~~Da~e~  156 (380)
                      ..+.+|.+|||+|||+|.+++.+++. |  .+|+++|+++.+++.|++|+..       |++   .++++++.+|+.+.
T Consensus       101 l~~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~d~~~~  179 (336)
T 2b25_A          101 MDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGA  179 (336)
T ss_dssp             HTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCC
T ss_pred             cCCCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEECChHHc
Confidence            35788999999999999999999986 4  6999999999999999999984       444   24589998887643

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*

Probab=98.69  E-value=1.3e-07  Score=82.99  Aligned_cols=62  Identities=21%  Similarity=0.161  Sum_probs=56.0

Q ss_pred             cCCCCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHH
Q 046527           93 FRPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDARE  155 (380)
Q Consensus        93 i~~g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e  155 (380)
                      ..++.+|||+|||+|.++..++..+.+|+++|+++.+++.+++++..+++.+ ++++++|+.+
T Consensus        30 ~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-~~~~~~d~~~   91 (199)
T 2xvm_A           30 VVKPGKTLDLGCGNGRNSLYLAANGYDVDAWDKNAMSIANVERIKSIENLDN-LHTRVVDLNN   91 (199)
T ss_dssp             TSCSCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCTT-EEEEECCGGG
T ss_pred             ccCCCeEEEEcCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHhCCCCC-cEEEEcchhh
Confidence            4467899999999999999999998899999999999999999999988865 8999888753

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=98.69  E-value=2.6e-08  Score=106.93  Aligned_cols=65  Identities=20%  Similarity=0.358  Sum_probs=58.3

Q ss_pred             hccCCCCeEEEecCCcchhHHHHhhcC--------------------------------------------CEEEEEeCC
Q 046527           91 SQFRPGETICDMFAGIGPFAIPAAQKG--------------------------------------------CIVFANDLN  126 (380)
Q Consensus        91 ~~i~~g~~VLDlfcGvG~fsl~aA~~g--------------------------------------------~~V~avDln  126 (380)
                      ..+.++..|||+|||+|+|.+.+|..+                                            ..|+|+|++
T Consensus       186 ~~~~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~~~~i~G~Did  265 (703)
T 3v97_A          186 SGWQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYSSHFYGSDSD  265 (703)
T ss_dssp             TTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEESC
T ss_pred             hCCCCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccCCccEEEEECC
Confidence            456788999999999999999988653                                            479999999


Q ss_pred             HHHHHHHHHHHHHcCCCCcEEEEeccHHH
Q 046527          127 PDSVHYLKINAKVNKVDNYVRAYNMDARE  155 (380)
Q Consensus       127 p~Aie~a~~Na~lN~l~~ri~~~~~Da~e  155 (380)
                      +.+++.|+.|+..+|+.+.+++.++|+.+
T Consensus       266 ~~av~~A~~N~~~agv~~~i~~~~~D~~~  294 (703)
T 3v97_A          266 ARVIQRARTNARLAGIGELITFEVKDVAQ  294 (703)
T ss_dssp             HHHHHHHHHHHHHTTCGGGEEEEECCGGG
T ss_pred             HHHHHHHHHHHHHcCCCCceEEEECChhh
Confidence            99999999999999999889999999865

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=98.68  E-value=1.1e-07  Score=86.29  Aligned_cols=65  Identities=20%  Similarity=0.196  Sum_probs=56.9

Q ss_pred             ccCCCCeEEEecCCcchhHHHHhhcCC-------EEEEEeCCHHHHHHHHHHHHHcCC----CCcEEEEeccHHHH
Q 046527           92 QFRPGETICDMFAGIGPFAIPAAQKGC-------IVFANDLNPDSVHYLKINAKVNKV----DNYVRAYNMDAREF  156 (380)
Q Consensus        92 ~i~~g~~VLDlfcGvG~fsl~aA~~g~-------~V~avDlnp~Aie~a~~Na~lN~l----~~ri~~~~~Da~e~  156 (380)
                      .+.++.+|||+|||+|.+++.+++...       +|+++|+++.+++.|++|++.+++    .++++++++|+.+.
T Consensus        77 ~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~  152 (227)
T 2pbf_A           77 VLKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQV  152 (227)
T ss_dssp             TSCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGC
T ss_pred             hCCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhc
Confidence            567899999999999999999998753       999999999999999999998883    33599999998753

>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0

Probab=98.67  E-value=4.2e-08  Score=92.93  Aligned_cols=80  Identities=13%  Similarity=0.167  Sum_probs=63.0

Q ss_pred             CceeecChHHHHHHHHHhccCCCCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccH
Q 046527           74 SLVYWNSRLEHEHLRIISQFRPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDA  153 (380)
Q Consensus        74 ~~ff~n~rl~tE~~r~i~~i~~g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da  153 (380)
                      +.-|..+....+.+.....+.++++|||+|||+|.++..++..+++|+|+|+++++++.+++++..   .++++++++|+
T Consensus         8 GQnFL~d~~i~~~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~~~~V~avEid~~~~~~~~~~~~~---~~~v~~i~~D~   84 (255)
T 3tqs_A            8 GQHFLHDSFVLQKIVSAIHPQKTDTLVEIGPGRGALTDYLLTECDNLALVEIDRDLVAFLQKKYNQ---QKNITIYQNDA   84 (255)
T ss_dssp             -CCEECCHHHHHHHHHHHCCCTTCEEEEECCTTTTTHHHHTTTSSEEEEEECCHHHHHHHHHHHTT---CTTEEEEESCT
T ss_pred             CcccccCHHHHHHHHHhcCCCCcCEEEEEcccccHHHHHHHHhCCEEEEEECCHHHHHHHHHHHhh---CCCcEEEEcch
Confidence            333444443444443344567899999999999999999999999999999999999999999864   23599999999


Q ss_pred             HHH
Q 046527          154 REF  156 (380)
Q Consensus       154 ~e~  156 (380)
                      .++
T Consensus        85 ~~~   87 (255)
T 3tqs_A           85 LQF   87 (255)
T ss_dssp             TTC
T ss_pred             HhC
Confidence            764

>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20

Probab=98.67  E-value=3.6e-08  Score=87.79  Aligned_cols=59  Identities=20%  Similarity=0.198  Sum_probs=54.2

Q ss_pred             CCCeEEEecCCcchhHHHHhhc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHH
Q 046527           95 PGETICDMFAGIGPFAIPAAQK--GCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAR  154 (380)
Q Consensus        95 ~g~~VLDlfcGvG~fsl~aA~~--g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~  154 (380)
                      ++.+|||+|||+|.+++.++..  +.+|+++|+++.+++.+++|+..+++.+ ++++++|+.
T Consensus        65 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~  125 (207)
T 1jsx_A           65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLEN-IEPVQSRVE  125 (207)
T ss_dssp             CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSS-EEEEECCTT
T ss_pred             CCCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCC-eEEEecchh
Confidence            5789999999999999999986  5699999999999999999999999987 999988875

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=98.66  E-value=8.4e-08  Score=88.06  Aligned_cols=65  Identities=23%  Similarity=0.194  Sum_probs=59.1

Q ss_pred             hccCCCCeEEEecCCcchhHHHHhhc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHH
Q 046527           91 SQFRPGETICDMFAGIGPFAIPAAQK-GCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDARE  155 (380)
Q Consensus        91 ~~i~~g~~VLDlfcGvG~fsl~aA~~-g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e  155 (380)
                      ..+.++.+|||+|||+|.++..+++. +++|+++|+++.+++.++++++.+++.++++++++|+.+
T Consensus        32 ~~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~   97 (256)
T 1nkv_A           32 LRMKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAG   97 (256)
T ss_dssp             TCCCTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTT
T ss_pred             cCCCCCCEEEEECCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHh
Confidence            34678899999999999999999976 679999999999999999999999998779999999865

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=98.65  E-value=1.6e-07  Score=88.12  Aligned_cols=62  Identities=16%  Similarity=0.131  Sum_probs=56.3

Q ss_pred             cCCCCeEEEecCCcchhHHHHh-hcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHH
Q 046527           93 FRPGETICDMFAGIGPFAIPAA-QKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAR  154 (380)
Q Consensus        93 i~~g~~VLDlfcGvG~fsl~aA-~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~  154 (380)
                      +.++.+|||+|||+|.+++.++ ..+++|+++|+++.+++.+++++...++.++++++.+|+.
T Consensus        62 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~  124 (287)
T 1kpg_A           62 LQPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWE  124 (287)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGG
T ss_pred             CCCcCEEEEECCcccHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChh
Confidence            5678999999999999999999 5578999999999999999999998888877999998874

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=98.64  E-value=4.9e-08  Score=94.79  Aligned_cols=66  Identities=21%  Similarity=0.214  Sum_probs=58.0

Q ss_pred             HhccCCCCeEEEecCCcchhH-HHHhh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHH
Q 046527           90 ISQFRPGETICDMFAGIGPFA-IPAAQ-KGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREF  156 (380)
Q Consensus        90 i~~i~~g~~VLDlfcGvG~fs-l~aA~-~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~  156 (380)
                      +..+.+|++|||+|||+|+++ +.+|+ .+++|+|+|+++++++.|+++++..++ ++++++++|+.++
T Consensus       117 la~l~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~gl-~~v~~v~gDa~~l  184 (298)
T 3fpf_A          117 LGRFRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGV-DGVNVITGDETVI  184 (298)
T ss_dssp             HTTCCTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTC-CSEEEEESCGGGG
T ss_pred             HcCCCCcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcCC-CCeEEEECchhhC
Confidence            467899999999999999886 45555 478999999999999999999999999 6799999999763

>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}

Probab=98.63  E-value=6.7e-08  Score=88.58  Aligned_cols=63  Identities=17%  Similarity=0.210  Sum_probs=54.6

Q ss_pred             hccCCCCeEEEecCCcchhHHHHhhc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHH
Q 046527           91 SQFRPGETICDMFAGIGPFAIPAAQK--GCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDARE  155 (380)
Q Consensus        91 ~~i~~g~~VLDlfcGvG~fsl~aA~~--g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e  155 (380)
                      ..+.+..+|||+|||+|++++.++..  +++|+|+|+|+.+++.+++|+..+|+.+++++  .|...
T Consensus        45 ~~l~~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~g~~~~v~~--~d~~~  109 (200)
T 3fzg_A           45 GNIKHVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLKTTIKYRF--LNKES  109 (200)
T ss_dssp             HHSCCCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHSCCSSEEEE--ECCHH
T ss_pred             hhcCCCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCccEEE--ecccc
Confidence            44677889999999999999999876  56999999999999999999999999976776  55543

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17

Probab=98.63  E-value=3.4e-07  Score=87.06  Aligned_cols=65  Identities=17%  Similarity=0.047  Sum_probs=55.7

Q ss_pred             CCCCeEEEecCCcchhHHHHhhc-C-CEEEEEeCCHHHHHHHHHHHHH--cCC-CCcEEEEeccHHHHHH
Q 046527           94 RPGETICDMFAGIGPFAIPAAQK-G-CIVFANDLNPDSVHYLKINAKV--NKV-DNYVRAYNMDAREFIR  158 (380)
Q Consensus        94 ~~g~~VLDlfcGvG~fsl~aA~~-g-~~V~avDlnp~Aie~a~~Na~l--N~l-~~ri~~~~~Da~e~l~  158 (380)
                      ..+.+|||+|||+|.++..+++. + .+|+++|+++.+++.|++|+..  +++ .++++++.+|+.+++.
T Consensus        74 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~  143 (275)
T 1iy9_A           74 PNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIA  143 (275)
T ss_dssp             SSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHH
T ss_pred             CCCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHh
Confidence            45789999999999999999987 4 5999999999999999999754  245 3579999999998763

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=98.62  E-value=1.8e-07  Score=83.92  Aligned_cols=62  Identities=23%  Similarity=0.294  Sum_probs=55.2

Q ss_pred             hccCCCCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHH
Q 046527           91 SQFRPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAR  154 (380)
Q Consensus        91 ~~i~~g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~  154 (380)
                      ..+.++.+|||+|||+|.++..+++.+.+|+++|+++.+++.|++++..++  .+++++++|+.
T Consensus        34 ~~~~~~~~vLDlG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~~~d~~   95 (227)
T 1ve3_A           34 KYMKKRGKVLDLACGVGGFSFLLEDYGFEVVGVDISEDMIRKAREYAKSRE--SNVEFIVGDAR   95 (227)
T ss_dssp             HSCCSCCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CCCEEEECCTT
T ss_pred             HhcCCCCeEEEEeccCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcC--CCceEEECchh
Confidence            445678899999999999999999998899999999999999999998887  34888888864

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A

Probab=98.62  E-value=8.3e-08  Score=85.13  Aligned_cols=64  Identities=22%  Similarity=0.123  Sum_probs=56.0

Q ss_pred             HHHhccCCCCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHH
Q 046527           88 RIISQFRPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAR  154 (380)
Q Consensus        88 r~i~~i~~g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~  154 (380)
                      ..+..+.++ +|||+|||+|.++..+++.+.+|+++|+++.+++.+++++..+++  ++.++++|+.
T Consensus        23 ~~~~~~~~~-~vLdiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~   86 (202)
T 2kw5_A           23 SVANQIPQG-KILCLAEGEGRNACFLASLGYEVTAVDQSSVGLAKAKQLAQEKGV--KITTVQSNLA   86 (202)
T ss_dssp             HHHHHSCSS-EEEECCCSCTHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHTC--CEEEECCBTT
T ss_pred             HHHHhCCCC-CEEEECCCCCHhHHHHHhCCCeEEEEECCHHHHHHHHHHHHhcCC--ceEEEEcChh
Confidence            344556778 999999999999999999989999999999999999999988876  4888888764

>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*

Probab=98.62  E-value=1.5e-07  Score=91.00  Aligned_cols=66  Identities=12%  Similarity=0.019  Sum_probs=57.0

Q ss_pred             cCCCCeEEEecCCcchhHHHHhhcC--CEEEEEeCCHHHHHHHHHHHHH--cCC-CCcEEEEeccHHHHHH
Q 046527           93 FRPGETICDMFAGIGPFAIPAAQKG--CIVFANDLNPDSVHYLKINAKV--NKV-DNYVRAYNMDAREFIR  158 (380)
Q Consensus        93 i~~g~~VLDlfcGvG~fsl~aA~~g--~~V~avDlnp~Aie~a~~Na~l--N~l-~~ri~~~~~Da~e~l~  158 (380)
                      ...+.+|||+|||+|.++..+++..  .+|+++|+++.+++.|++|+..  +++ ..+++++.+|+.+++.
T Consensus        93 ~~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~  163 (304)
T 2o07_A           93 HPNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMK  163 (304)
T ss_dssp             SSSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHH
T ss_pred             CCCCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHh
Confidence            3567899999999999999999874  5999999999999999999875  455 4579999999988763

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=98.61  E-value=6.8e-08  Score=92.44  Aligned_cols=63  Identities=21%  Similarity=0.256  Sum_probs=58.8

Q ss_pred             cCCCCeEEEecCCcchhHHHHhhc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHH
Q 046527           93 FRPGETICDMFAGIGPFAIPAAQK-GCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDARE  155 (380)
Q Consensus        93 i~~g~~VLDlfcGvG~fsl~aA~~-g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e  155 (380)
                      +.++.+|||+|||+|.+++.+++. +++|+|+|+++.+++.|++|+..+++.++++++++|+.+
T Consensus       115 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  178 (312)
T 3vc1_A          115 AGPDDTLVDAGCGRGGSMVMAHRRFGSRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLD  178 (312)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTS
T ss_pred             CCCCCEEEEecCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhc
Confidence            567899999999999999999988 889999999999999999999999998789999999854

>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}

Probab=98.61  E-value=1.4e-07  Score=88.46  Aligned_cols=63  Identities=22%  Similarity=0.247  Sum_probs=56.7

Q ss_pred             CCCCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHH
Q 046527           94 RPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREF  156 (380)
Q Consensus        94 ~~g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~  156 (380)
                      .++.+|||+|||+|.++..++..+.+|+|+|+++.+++.|++++..+++..+++++++|+.+.
T Consensus        67 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~  129 (285)
T 4htf_A           67 PQKLRVLDAGGGEGQTAIKMAERGHQVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDV  129 (285)
T ss_dssp             SSCCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGT
T ss_pred             CCCCEEEEeCCcchHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHh
Confidence            346799999999999999999999999999999999999999999999977799999998654

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}

Probab=98.61  E-value=1e-07  Score=85.78  Aligned_cols=64  Identities=19%  Similarity=0.272  Sum_probs=55.7

Q ss_pred             hccCCCCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCC----CcEEEEeccHH
Q 046527           91 SQFRPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKVD----NYVRAYNMDAR  154 (380)
Q Consensus        91 ~~i~~g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~lN~l~----~ri~~~~~Da~  154 (380)
                      ..+.++.+|||+|||+|.++..++..+.+|+++|+++.+++.+++++..+++.    +++.++++|+.
T Consensus        26 ~~~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~   93 (235)
T 3sm3_A           26 NYLQEDDEILDIGCGSGKISLELASKGYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENAS   93 (235)
T ss_dssp             HHCCTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTT
T ss_pred             HhCCCCCeEEEECCCCCHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEeccc
Confidence            34678899999999999999999999999999999999999999999887773    34778877753

>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*

Probab=98.61  E-value=1.8e-07  Score=89.86  Aligned_cols=64  Identities=8%  Similarity=-0.010  Sum_probs=55.0

Q ss_pred             CCCCeEEEecCCcchhHHHHhhc-C-CEEEEEeCCHHHHHHHHHHHHH--cCC-CCcEEEEeccHHHHH
Q 046527           94 RPGETICDMFAGIGPFAIPAAQK-G-CIVFANDLNPDSVHYLKINAKV--NKV-DNYVRAYNMDAREFI  157 (380)
Q Consensus        94 ~~g~~VLDlfcGvG~fsl~aA~~-g-~~V~avDlnp~Aie~a~~Na~l--N~l-~~ri~~~~~Da~e~l  157 (380)
                      ..+.+|||+|||+|.++..+++. + .+|+++|+++.+++.|++|+..  +++ ..+++++.+|+.+++
T Consensus        89 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l  157 (296)
T 1inl_A           89 PNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYV  157 (296)
T ss_dssp             SSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHG
T ss_pred             CCCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHH
Confidence            45689999999999999999987 3 5999999999999999999864  344 357999999998764

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*

Probab=98.60  E-value=1e-07  Score=87.62  Aligned_cols=63  Identities=19%  Similarity=0.173  Sum_probs=58.4

Q ss_pred             ccCCCCeEEEecCCcchhHHHHhhcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHH
Q 046527           92 QFRPGETICDMFAGIGPFAIPAAQKGC-IVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAR  154 (380)
Q Consensus        92 ~i~~g~~VLDlfcGvG~fsl~aA~~g~-~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~  154 (380)
                      .+.++.+|||+|||+|.+++.+++.+. +|+|+|+++.+++.+++++..+++.++++++++|+.
T Consensus        43 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~  106 (257)
T 3f4k_A           43 ELTDDAKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNENAVKANCADRVKGITGSMD  106 (257)
T ss_dssp             CCCTTCEEEEETCTTSHHHHHHHHHCCSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTT
T ss_pred             cCCCCCeEEEeCCCCCHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChh
Confidence            457889999999999999999998865 999999999999999999999999988999999984

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=98.60  E-value=1.6e-07  Score=90.68  Aligned_cols=86  Identities=15%  Similarity=0.019  Sum_probs=67.4

Q ss_pred             EEccCceeecChHH--HHHHHHHhccCCCCeEEEecCCcchhHHHHhhcCC---EEEEEeCCHHHHHHHHHHHHHcCCCC
Q 046527           70 KLDYSLVYWNSRLE--HEHLRIISQFRPGETICDMFAGIGPFAIPAAQKGC---IVFANDLNPDSVHYLKINAKVNKVDN  144 (380)
Q Consensus        70 ~id~~~ff~n~rl~--tE~~r~i~~i~~g~~VLDlfcGvG~fsl~aA~~g~---~V~avDlnp~Aie~a~~Na~lN~l~~  144 (380)
                      .++...|||.....  ...+.....+.++++|||+|||+|.+++.+++.+.   +|+++|+++.+++.|++|++.+++.+
T Consensus        48 ~l~~~~f~q~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~  127 (317)
T 1dl5_A           48 SYDDGEEYSTSSQPSLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIEN  127 (317)
T ss_dssp             EEECSSCEEEECCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCS
T ss_pred             cccCCCcceeccCHHHHHHHHHhcCCCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCC
Confidence            44556666653221  22222223567899999999999999999998754   59999999999999999999999987


Q ss_pred             cEEEEeccHHHH
Q 046527          145 YVRAYNMDAREF  156 (380)
Q Consensus       145 ri~~~~~Da~e~  156 (380)
                       ++++++|+.+.
T Consensus       128 -v~~~~~d~~~~  138 (317)
T 1dl5_A          128 -VIFVCGDGYYG  138 (317)
T ss_dssp             -EEEEESCGGGC
T ss_pred             -eEEEECChhhc
Confidence             99999999764

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}

Probab=98.59  E-value=8.4e-08  Score=87.40  Aligned_cols=61  Identities=13%  Similarity=0.014  Sum_probs=53.8

Q ss_pred             CCCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHH
Q 046527           95 PGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDARE  155 (380)
Q Consensus        95 ~g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e  155 (380)
                      ++.+|||+|||+|.++..++..+.+|+|+|+++.+++.|++++...+...+++++++|+.+
T Consensus        66 ~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  126 (235)
T 3lcc_A           66 PLGRALVPGCGGGHDVVAMASPERFVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFT  126 (235)
T ss_dssp             CCEEEEEETCTTCHHHHHHCBTTEEEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTT
T ss_pred             CCCCEEEeCCCCCHHHHHHHhCCCeEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhc
Confidence            3459999999999999999998889999999999999999999876666679999888753

>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*

Probab=98.59  E-value=2.7e-07  Score=87.84  Aligned_cols=66  Identities=15%  Similarity=0.047  Sum_probs=55.9

Q ss_pred             cCCCCeEEEecCCcchhHHHHhhcC-CEEEEEeCCHHHHHHHHHHHHHc--CC--------CCcEEEEeccHHHHHHH
Q 046527           93 FRPGETICDMFAGIGPFAIPAAQKG-CIVFANDLNPDSVHYLKINAKVN--KV--------DNYVRAYNMDAREFIRQ  159 (380)
Q Consensus        93 i~~g~~VLDlfcGvG~fsl~aA~~g-~~V~avDlnp~Aie~a~~Na~lN--~l--------~~ri~~~~~Da~e~l~~  159 (380)
                      ...+.+|||+|||+|.++..+++.+ .+|+++|+++.+++.|++|+ ..  ++        ..+++++.+|+.+++..
T Consensus        73 ~~~~~~VLdiG~G~G~~~~~l~~~~~~~v~~vDid~~~i~~ar~~~-~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~  149 (281)
T 1mjf_A           73 HPKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLI-KIDNGLLEAMLNGKHEKAKLTIGDGFEFIKN  149 (281)
T ss_dssp             SSCCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHT-CTTTTHHHHHHTTCCSSEEEEESCHHHHHHH
T ss_pred             CCCCCeEEEEcCCcCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH-hhccccccccccCCCCcEEEEECchHHHhcc
Confidence            3567899999999999999999885 49999999999999999998 32  33        45799999999887644

>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}

Probab=98.59  E-value=1.1e-07  Score=91.19  Aligned_cols=86  Identities=15%  Similarity=0.189  Sum_probs=64.5

Q ss_pred             CeEEEEccCceeecChHHHHHHHHHhccCCCCeEEEecCCcchhHHHHhhcCCE----EEEEeCCHHHHHHHHHHHHHcC
Q 046527           66 GATFKLDYSLVYWNSRLEHEHLRIISQFRPGETICDMFAGIGPFAIPAAQKGCI----VFANDLNPDSVHYLKINAKVNK  141 (380)
Q Consensus        66 G~~F~id~~~ff~n~rl~tE~~r~i~~i~~g~~VLDlfcGvG~fsl~aA~~g~~----V~avDlnp~Aie~a~~Na~lN~  141 (380)
                      |.+.+-.++.-|..+....+.+.....+.++++|||+|||+|.++..++..+..    |+|+|+++.+++.++++.    
T Consensus        13 ~~~~~k~~GQ~fL~d~~i~~~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~----   88 (279)
T 3uzu_A           13 GHFARKRFGQNFLVDHGVIDAIVAAIRPERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRF----   88 (279)
T ss_dssp             -----CCCSCCEECCHHHHHHHHHHHCCCTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHH----
T ss_pred             CCCccccCCccccCCHHHHHHHHHhcCCCCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhc----
Confidence            455555666666655544444433345678999999999999999999998777    999999999999999993    


Q ss_pred             CCCcEEEEeccHHHH
Q 046527          142 VDNYVRAYNMDAREF  156 (380)
Q Consensus       142 l~~ri~~~~~Da~e~  156 (380)
                       .++++++++|+.++
T Consensus        89 -~~~v~~i~~D~~~~  102 (279)
T 3uzu_A           89 -GELLELHAGDALTF  102 (279)
T ss_dssp             -GGGEEEEESCGGGC
T ss_pred             -CCCcEEEECChhcC
Confidence             33599999999764

>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A

Probab=98.58  E-value=7.6e-08  Score=89.89  Aligned_cols=61  Identities=15%  Similarity=0.186  Sum_probs=54.1

Q ss_pred             ccCCCCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHH
Q 046527           92 QFRPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDARE  155 (380)
Q Consensus        92 ~i~~g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e  155 (380)
                      .+.++++|||+|||+|.++..++..+.+|+|+|+++.+++.+++|+..  . ++++++++|+.+
T Consensus        27 ~~~~~~~VLDiG~G~G~lt~~l~~~~~~v~~vD~~~~~~~~a~~~~~~--~-~~v~~~~~D~~~   87 (244)
T 1qam_A           27 RLNEHDNIFEIGSGKGHFTLELVQRCNFVTAIEIDHKLCKTTENKLVD--H-DNFQVLNKDILQ   87 (244)
T ss_dssp             CCCTTCEEEEECCTTSHHHHHHHHHSSEEEEECSCHHHHHHHHHHTTT--C-CSEEEECCCGGG
T ss_pred             CCCCCCEEEEEeCCchHHHHHHHHcCCeEEEEECCHHHHHHHHHhhcc--C-CCeEEEEChHHh
Confidence            456789999999999999999999999999999999999999999853  2 359999999864

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*

Probab=98.58  E-value=9.7e-08  Score=88.81  Aligned_cols=64  Identities=17%  Similarity=0.139  Sum_probs=58.7

Q ss_pred             ccCCCCeEEEecCCcchhHHHHhhcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHH
Q 046527           92 QFRPGETICDMFAGIGPFAIPAAQKGC-IVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDARE  155 (380)
Q Consensus        92 ~i~~g~~VLDlfcGvG~fsl~aA~~g~-~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e  155 (380)
                      .+.++.+|||+|||+|.+++.+++.+. +|+|+|+++.+++.|+++++.+++.++++++++|+.+
T Consensus        43 ~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  107 (267)
T 3kkz_A           43 NLTEKSLIADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDD  107 (267)
T ss_dssp             CCCTTCEEEEETCTTCHHHHHHHTTCSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTS
T ss_pred             cCCCCCEEEEeCCCCCHHHHHHHhccCCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhh
Confidence            356889999999999999999998855 9999999999999999999999998889999999854

>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45

Probab=98.57  E-value=6.2e-08  Score=98.12  Aligned_cols=79  Identities=20%  Similarity=0.220  Sum_probs=61.4

Q ss_pred             eeecChHHHHHHHHHhccCCCCeEEEecCCcchhHHHHhhc---------------CCEEEEEeCCHHHHHHHHHHHHHc
Q 046527           76 VYWNSRLEHEHLRIISQFRPGETICDMFAGIGPFAIPAAQK---------------GCIVFANDLNPDSVHYLKINAKVN  140 (380)
Q Consensus        76 ff~n~rl~tE~~r~i~~i~~g~~VLDlfcGvG~fsl~aA~~---------------g~~V~avDlnp~Aie~a~~Na~lN  140 (380)
                      .|+.++...+.+..+....++.+|||++||+|.|.+.+++.               ...++|+|+++.+++.|+.|+.++
T Consensus       152 ~fyTP~~v~~~mv~~l~~~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~  231 (445)
T 2okc_A          152 QYFTPRPLIQAMVDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLH  231 (445)
T ss_dssp             GGCCCHHHHHHHHHHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHT
T ss_pred             cccCcHHHHHHHHHHhCCCCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHh
Confidence            45677755554433344567889999999999999998864               358999999999999999999999


Q ss_pred             CCCC-cEEEEeccHH
Q 046527          141 KVDN-YVRAYNMDAR  154 (380)
Q Consensus       141 ~l~~-ri~~~~~Da~  154 (380)
                      ++.. .+.+.++|+.
T Consensus       232 g~~~~~~~i~~gD~l  246 (445)
T 2okc_A          232 GIGTDRSPIVCEDSL  246 (445)
T ss_dssp             TCCSSCCSEEECCTT
T ss_pred             CCCcCCCCEeeCCCC
Confidence            9862 3667777653

>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A

Probab=98.56  E-value=1.1e-07  Score=89.86  Aligned_cols=61  Identities=15%  Similarity=0.247  Sum_probs=51.4

Q ss_pred             hccCCCCeEEEecCCcchhHHHHhhcCCE--EEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHH
Q 046527           91 SQFRPGETICDMFAGIGPFAIPAAQKGCI--VFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREF  156 (380)
Q Consensus        91 ~~i~~g~~VLDlfcGvG~fsl~aA~~g~~--V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~  156 (380)
                      ..+.++++|||+|||+|.++. +++ +.+  |+|+|+++.+++.++++...+   ++++++++|+.++
T Consensus        17 ~~~~~~~~VLEIG~G~G~lt~-l~~-~~~~~v~avEid~~~~~~a~~~~~~~---~~v~~i~~D~~~~   79 (252)
T 1qyr_A           17 INPQKGQAMVEIGPGLAALTE-PVG-ERLDQLTVIELDRDLAARLQTHPFLG---PKLTIYQQDAMTF   79 (252)
T ss_dssp             HCCCTTCCEEEECCTTTTTHH-HHH-TTCSCEEEECCCHHHHHHHHTCTTTG---GGEEEECSCGGGC
T ss_pred             cCCCCcCEEEEECCCCcHHHH-hhh-CCCCeEEEEECCHHHHHHHHHHhccC---CceEEEECchhhC
Confidence            356788999999999999999 654 567  999999999999999887542   3599999998763

>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*

Probab=98.55  E-value=4e-07  Score=88.21  Aligned_cols=67  Identities=13%  Similarity=0.064  Sum_probs=56.4

Q ss_pred             cCCCCeEEEecCCcchhHHHHhhc--CCEEEEEeCCHHHHHHHHHHHHH-cC--C-CCcEEEEeccHHHHHHH
Q 046527           93 FRPGETICDMFAGIGPFAIPAAQK--GCIVFANDLNPDSVHYLKINAKV-NK--V-DNYVRAYNMDAREFIRQ  159 (380)
Q Consensus        93 i~~g~~VLDlfcGvG~fsl~aA~~--g~~V~avDlnp~Aie~a~~Na~l-N~--l-~~ri~~~~~Da~e~l~~  159 (380)
                      ...+.+|||+|||+|.++..+++.  +.+|+++|+++.+++.|++++.. |+  + ..+++++.+|+.+++..
T Consensus        75 ~~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~  147 (314)
T 1uir_A           75 HPEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLER  147 (314)
T ss_dssp             SSCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHH
T ss_pred             CCCCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHh
Confidence            356789999999999999999987  45999999999999999999864 32  3 35799999999988643

>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}

Probab=98.55  E-value=1.1e-07  Score=94.46  Aligned_cols=64  Identities=25%  Similarity=0.314  Sum_probs=59.1

Q ss_pred             ccCCCCeEEEecCCcchhHHHHhhcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHH
Q 046527           92 QFRPGETICDMFAGIGPFAIPAAQKGC-IVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREF  156 (380)
Q Consensus        92 ~i~~g~~VLDlfcGvG~fsl~aA~~g~-~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~  156 (380)
                      ...++.+|||+|||+|.+++.+++.|+ +|+|+|++ .+++.|+++++.|++.++++++++|+.++
T Consensus        60 ~~~~~~~VLDlGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~  124 (376)
T 3r0q_C           60 HHFEGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMADHARALVKANNLDHIVEVIEGSVEDI  124 (376)
T ss_dssp             TTTTTCEEEEESCTTTHHHHHHHHTTCSEEEEEESS-TTHHHHHHHHHHTTCTTTEEEEESCGGGC
T ss_pred             ccCCCCEEEEeccCcCHHHHHHHhcCCCEEEEEccH-HHHHHHHHHHHHcCCCCeEEEEECchhhc
Confidence            346789999999999999999999987 99999999 99999999999999999999999998653

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}

Probab=98.55  E-value=9.9e-08  Score=90.98  Aligned_cols=65  Identities=15%  Similarity=0.187  Sum_probs=57.6

Q ss_pred             hccCCCCeEEEecCCcchhHHHHh--hc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHH
Q 046527           91 SQFRPGETICDMFAGIGPFAIPAA--QK-GCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDARE  155 (380)
Q Consensus        91 ~~i~~g~~VLDlfcGvG~fsl~aA--~~-g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e  155 (380)
                      ..+.++.+|||+|||+|.+++.++  .. +.+|+++|+++.+++.|++|+..+++.++++++++|+.+
T Consensus       114 ~~l~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  181 (305)
T 3ocj_A          114 RHLRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWK  181 (305)
T ss_dssp             HHCCTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGG
T ss_pred             hhCCCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhc
Confidence            446889999999999999999985  22 459999999999999999999999998889999998764

>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*

Probab=98.53  E-value=1.7e-07  Score=91.78  Aligned_cols=63  Identities=17%  Similarity=0.193  Sum_probs=57.8

Q ss_pred             cCCCCeEEEecCCcchhHHHHhhcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHH
Q 046527           93 FRPGETICDMFAGIGPFAIPAAQKGC-IVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREF  156 (380)
Q Consensus        93 i~~g~~VLDlfcGvG~fsl~aA~~g~-~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~  156 (380)
                      ..++.+|||+|||+|.+++.+++.|+ +|+|+|+++ +++.|+++++.|++.++++++++|+.++
T Consensus        62 ~~~~~~VLDiGcGtG~ls~~la~~g~~~v~gvD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~  125 (340)
T 2fyt_A           62 IFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSE-ILYQAMDIIRLNKLEDTITLIKGKIEEV  125 (340)
T ss_dssp             GTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTS
T ss_pred             hcCCCEEEEeeccCcHHHHHHHHcCCCEEEEEChHH-HHHHHHHHHHHcCCCCcEEEEEeeHHHh
Confidence            57889999999999999999999876 999999997 9999999999999977899999998753

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}

Probab=98.53  E-value=3e-07  Score=87.15  Aligned_cols=62  Identities=13%  Similarity=0.095  Sum_probs=54.4

Q ss_pred             CCCCeEEEecCCcchhHHHHhh---cCCEEEEEeCCHHHHHHHHHHHHHc-CCCCcEEEEeccHHH
Q 046527           94 RPGETICDMFAGIGPFAIPAAQ---KGCIVFANDLNPDSVHYLKINAKVN-KVDNYVRAYNMDARE  155 (380)
Q Consensus        94 ~~g~~VLDlfcGvG~fsl~aA~---~g~~V~avDlnp~Aie~a~~Na~lN-~l~~ri~~~~~Da~e  155 (380)
                      .++.+|||+|||+|.++..+++   .+.+|+|+|+++.+++.|+++++.+ +...+++++++|+.+
T Consensus        35 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~  100 (299)
T 3g5t_A           35 GERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDD  100 (299)
T ss_dssp             SCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTC
T ss_pred             CCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHh
Confidence            5788999999999999999994   5679999999999999999999987 555569999999854

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*

Probab=98.52  E-value=8.4e-07  Score=79.39  Aligned_cols=60  Identities=12%  Similarity=-0.043  Sum_probs=52.4

Q ss_pred             ccCCCCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHH
Q 046527           92 QFRPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAR  154 (380)
Q Consensus        92 ~i~~g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~  154 (380)
                      ...++.+|||+|||+|.++..+++.+.+|+|+|+++.+++.+++++..++   +++++++|+.
T Consensus        48 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~---~~~~~~~d~~  107 (216)
T 3ofk_A           48 SSGAVSNGLEIGCAAGAFTEKLAPHCKRLTVIDVMPRAIGRACQRTKRWS---HISWAATDIL  107 (216)
T ss_dssp             TTSSEEEEEEECCTTSHHHHHHGGGEEEEEEEESCHHHHHHHHHHTTTCS---SEEEEECCTT
T ss_pred             ccCCCCcEEEEcCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHhcccCC---CeEEEEcchh
Confidence            34567899999999999999999998899999999999999999986543   5889988874

>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*

Probab=98.52  E-value=3.2e-08  Score=91.34  Aligned_cols=62  Identities=13%  Similarity=-0.052  Sum_probs=50.9

Q ss_pred             cCCCCeEEEecCCcchhHHHHhhc--CCEEEEEeCC-HHHHHHH---HHHHHHcCCCCcEEEEeccHHH
Q 046527           93 FRPGETICDMFAGIGPFAIPAAQK--GCIVFANDLN-PDSVHYL---KINAKVNKVDNYVRAYNMDARE  155 (380)
Q Consensus        93 i~~g~~VLDlfcGvG~fsl~aA~~--g~~V~avDln-p~Aie~a---~~Na~lN~l~~ri~~~~~Da~e  155 (380)
                      ..++++|||+|||+|.+++.+|+.  +.+|+|+|++ +.+++.|   ++++..+++.+ +.++++|+.+
T Consensus        22 ~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~~-v~~~~~d~~~   89 (225)
T 3p2e_A           22 GQFDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGLSN-VVFVIAAAES   89 (225)
T ss_dssp             TTCSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTCCSS-EEEECCBTTB
T ss_pred             CCCCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCCCC-eEEEEcCHHH
Confidence            357889999999999999999953  5699999999 5555554   88888888876 8999888754

>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*

Probab=98.52  E-value=1.3e-07  Score=92.71  Aligned_cols=63  Identities=22%  Similarity=0.257  Sum_probs=58.3

Q ss_pred             cCCCCeEEEecCCcchhHHHHhhcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHH
Q 046527           93 FRPGETICDMFAGIGPFAIPAAQKGC-IVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREF  156 (380)
Q Consensus        93 i~~g~~VLDlfcGvG~fsl~aA~~g~-~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~  156 (380)
                      +.++.+|||+|||+|.+++.+++.|+ +|+|+|+++ +++.|+++++.|++.++++++++|+.++
T Consensus        64 ~~~~~~VLDvGcG~G~~~~~la~~g~~~v~gvD~s~-~l~~a~~~~~~~~~~~~v~~~~~d~~~~  127 (349)
T 3q7e_A           64 LFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSS-ISDYAVKIVKANKLDHVVTIIKGKVEEV  127 (349)
T ss_dssp             HHTTCEEEEESCTTSHHHHHHHHTTCSEEEEEECST-HHHHHHHHHHHTTCTTTEEEEESCTTTC
T ss_pred             cCCCCEEEEEeccchHHHHHHHHCCCCEEEEECcHH-HHHHHHHHHHHcCCCCcEEEEECcHHHc
Confidence            46789999999999999999999976 999999995 9999999999999999999999998754

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*

Probab=98.52  E-value=4.5e-07  Score=83.15  Aligned_cols=64  Identities=22%  Similarity=0.163  Sum_probs=58.5

Q ss_pred             HhccCCCCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHH
Q 046527           90 ISQFRPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAR  154 (380)
Q Consensus        90 i~~i~~g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~  154 (380)
                      ...+.++.+|||+|||+|.++..++..+.+|+++|+++.+++.+++++..+++.+ ++++++|+.
T Consensus        16 ~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~   79 (239)
T 1xxl_A           16 TAECRAEHRVLDIGAGAGHTALAFSPYVQECIGVDATKEMVEVASSFAQEKGVEN-VRFQQGTAE   79 (239)
T ss_dssp             HHTCCTTCEEEEESCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHHTCCS-EEEEECBTT
T ss_pred             HhCcCCCCEEEEEccCcCHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCCCC-eEEEecccc
Confidence            3457889999999999999999999998999999999999999999999998875 999999875

>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A

Probab=98.51  E-value=9.3e-07  Score=86.76  Aligned_cols=92  Identities=15%  Similarity=0.041  Sum_probs=67.4

Q ss_pred             CCeEEEEccCceeecChH----HHHHHHHH--hccCCCCeEEEecCCcchhHHHHhhc--CCEEEEEeCCHHHHHHHHHH
Q 046527           65 YGATFKLDYSLVYWNSRL----EHEHLRII--SQFRPGETICDMFAGIGPFAIPAAQK--GCIVFANDLNPDSVHYLKIN  136 (380)
Q Consensus        65 ~G~~F~id~~~ff~n~rl----~tE~~r~i--~~i~~g~~VLDlfcGvG~fsl~aA~~--g~~V~avDlnp~Aie~a~~N  136 (380)
                      .|..|.+|..  .+.++.    .+|.+..+  .....+.+|||+|||+|.++..+++.  +.+|+++|+++.+++.|++|
T Consensus        86 ~g~~l~ldg~--~~~~~~de~~y~e~L~~l~l~~~~~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~  163 (334)
T 1xj5_A           86 YGKVLVLDGV--IQLTERDECAYQEMITHLPLCSIPNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQF  163 (334)
T ss_dssp             SCEEEEETTE--EEEETTTHHHHHHHHHHHHHTTSSCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHH
T ss_pred             CCeEEEECCE--eecCcCcchHHHHHHHHHHHhhCCCCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHH
Confidence            4667777643  333221    23333222  22356789999999999999999987  35999999999999999999


Q ss_pred             HHHc--CC-CCcEEEEeccHHHHHH
Q 046527          137 AKVN--KV-DNYVRAYNMDAREFIR  158 (380)
Q Consensus       137 a~lN--~l-~~ri~~~~~Da~e~l~  158 (380)
                      +...  ++ ..+++++++|+.+++.
T Consensus       164 ~~~~~~gl~~~rv~~~~~D~~~~l~  188 (334)
T 1xj5_A          164 FPDVAIGYEDPRVNLVIGDGVAFLK  188 (334)
T ss_dssp             CHHHHGGGGSTTEEEEESCHHHHHH
T ss_pred             HHhhccccCCCcEEEEECCHHHHHH
Confidence            8753  55 3479999999998764

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=98.49  E-value=6.8e-07  Score=83.83  Aligned_cols=60  Identities=18%  Similarity=0.202  Sum_probs=50.9

Q ss_pred             ccCCCCeEEEecCCcchhHHHHhhc-C--CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHH
Q 046527           92 QFRPGETICDMFAGIGPFAIPAAQK-G--CIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAR  154 (380)
Q Consensus        92 ~i~~g~~VLDlfcGvG~fsl~aA~~-g--~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~  154 (380)
                      .+++|++|||+|||+|.++.++|.. |  .+|+|+|+++++++.|+++++..  .| +..+.+|+.
T Consensus        74 ~ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~--~n-i~~V~~d~~  136 (233)
T 4df3_A           74 PVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDR--RN-IFPILGDAR  136 (233)
T ss_dssp             CCCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTC--TT-EEEEESCTT
T ss_pred             CCCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhh--cC-eeEEEEecc
Confidence            3689999999999999999999986 3  49999999999999999887543  34 788877764

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A

Probab=98.49  E-value=2.9e-07  Score=82.76  Aligned_cols=61  Identities=8%  Similarity=0.013  Sum_probs=55.2

Q ss_pred             cCCCCeEEEecCCcchhHHHHhhcC--CEEEEEeCCHHHHHHHHHHHHHcCCCC----cEEEEeccH
Q 046527           93 FRPGETICDMFAGIGPFAIPAAQKG--CIVFANDLNPDSVHYLKINAKVNKVDN----YVRAYNMDA  153 (380)
Q Consensus        93 i~~g~~VLDlfcGvG~fsl~aA~~g--~~V~avDlnp~Aie~a~~Na~lN~l~~----ri~~~~~Da  153 (380)
                      ..++.+|||+|||+|.++..+++.+  .+|+++|+++.+++.+++++..+++.+    +++++++|+
T Consensus        27 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~   93 (217)
T 3jwh_A           27 QSNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGAL   93 (217)
T ss_dssp             HTTCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCT
T ss_pred             hcCCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCc
Confidence            3578899999999999999999876  599999999999999999999888874    699999986

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*

Probab=98.49  E-value=7.5e-07  Score=90.30  Aligned_cols=66  Identities=12%  Similarity=0.112  Sum_probs=56.1

Q ss_pred             hccCCCCeEEEecCCcchhHHHHhhc-CC-EEEEEeCCHHHHHHHHHHH-------HHcCCC-CcEEEEeccHHHH
Q 046527           91 SQFRPGETICDMFAGIGPFAIPAAQK-GC-IVFANDLNPDSVHYLKINA-------KVNKVD-NYVRAYNMDAREF  156 (380)
Q Consensus        91 ~~i~~g~~VLDlfcGvG~fsl~aA~~-g~-~V~avDlnp~Aie~a~~Na-------~lN~l~-~ri~~~~~Da~e~  156 (380)
                      ..+.+|++|||+|||+|.+++.+|.. ++ +|+|||+++.+++.|++|+       +.+++. ++|+++++|+.+.
T Consensus       169 l~l~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~GD~~~l  244 (438)
T 3uwp_A          169 IKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLSE  244 (438)
T ss_dssp             HCCCTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEECCTTSH
T ss_pred             cCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEECcccCC
Confidence            35789999999999999999999864 56 6999999999999999876       346763 5799999999764

>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*

Probab=98.48  E-value=3.7e-07  Score=95.12  Aligned_cols=80  Identities=16%  Similarity=0.140  Sum_probs=60.7

Q ss_pred             ceeecChHHHHHHHHHhccCCCCeEEEecCCcchhHHHHhhc--------------------CCEEEEEeCCHHHHHHHH
Q 046527           75 LVYWNSRLEHEHLRIISQFRPGETICDMFAGIGPFAIPAAQK--------------------GCIVFANDLNPDSVHYLK  134 (380)
Q Consensus        75 ~ff~n~rl~tE~~r~i~~i~~g~~VLDlfcGvG~fsl~aA~~--------------------g~~V~avDlnp~Aie~a~  134 (380)
                      ..|+.++...+.+..+....++.+|+|++||+|.|.+.+++.                    ...++|+|+++.+++.|+
T Consensus       149 G~fyTP~~iv~~mv~~l~p~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~  228 (541)
T 2ar0_A          149 GQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLAL  228 (541)
T ss_dssp             -CCCCCHHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHH
T ss_pred             CeeeCCHHHHHHHHHHhccCCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHH
Confidence            356677755555433334567889999999999999988853                    137999999999999999


Q ss_pred             HHHHHcCCCC----cEEEEeccHH
Q 046527          135 INAKVNKVDN----YVRAYNMDAR  154 (380)
Q Consensus       135 ~Na~lN~l~~----ri~~~~~Da~  154 (380)
                      .|+.++++.+    .+.+.++|..
T Consensus       229 ~nl~l~gi~~~~~~~~~I~~gDtL  252 (541)
T 2ar0_A          229 MNCLLHDIEGNLDHGGAIRLGNTL  252 (541)
T ss_dssp             HHHHTTTCCCBGGGTBSEEESCTT
T ss_pred             HHHHHhCCCccccccCCeEeCCCc
Confidence            9999998874    2556666653

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36

Probab=98.47  E-value=9e-08  Score=86.34  Aligned_cols=64  Identities=13%  Similarity=0.068  Sum_probs=53.6

Q ss_pred             cCCCCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcC-----------CCCcEEEEeccHHHH
Q 046527           93 FRPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVNK-----------VDNYVRAYNMDAREF  156 (380)
Q Consensus        93 i~~g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~lN~-----------l~~ri~~~~~Da~e~  156 (380)
                      +.++.+|||+|||+|.++..+++.|.+|+|+|+|+.+++.|+++.....           ...+++++++|+.+.
T Consensus        20 ~~~~~~vLD~GCG~G~~~~~la~~g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l   94 (203)
T 1pjz_A           20 VVPGARVLVPLCGKSQDMSWLSGQGYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFAL   94 (203)
T ss_dssp             CCTTCEEEETTTCCSHHHHHHHHHCCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSS
T ss_pred             cCCCCEEEEeCCCCcHhHHHHHHCCCeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccccC
Confidence            4678999999999999999999999999999999999999998764310           023589999998653

>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6

Probab=98.47  E-value=2.6e-07  Score=89.79  Aligned_cols=64  Identities=16%  Similarity=0.228  Sum_probs=57.9

Q ss_pred             ccCCCCeEEEecCCcchhHHHHhhcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHH
Q 046527           92 QFRPGETICDMFAGIGPFAIPAAQKGC-IVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREF  156 (380)
Q Consensus        92 ~i~~g~~VLDlfcGvG~fsl~aA~~g~-~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~  156 (380)
                      ...++.+|||+|||+|.+++.+++.|+ +|+|+|++ .+++.|+++++.|++.++++++++|+.+.
T Consensus        35 ~~~~~~~VLDiGcGtG~ls~~la~~g~~~v~~vD~s-~~~~~a~~~~~~~~~~~~i~~~~~d~~~~   99 (328)
T 1g6q_1           35 DLFKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMS-SIIEMAKELVELNGFSDKITLLRGKLEDV   99 (328)
T ss_dssp             HHHTTCEEEEETCTTSHHHHHHHHTCCSEEEEEESS-THHHHHHHHHHHTTCTTTEEEEESCTTTS
T ss_pred             hhcCCCEEEEecCccHHHHHHHHHCCCCEEEEEChH-HHHHHHHHHHHHcCCCCCEEEEECchhhc
Confidence            346788999999999999999999876 99999999 59999999999999998899999998753

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}

Probab=98.47  E-value=6e-07  Score=79.63  Aligned_cols=67  Identities=13%  Similarity=0.094  Sum_probs=53.5

Q ss_pred             HHHHHhccCCCCeEEEecCCcchhHH-HHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHH
Q 046527           86 HLRIISQFRPGETICDMFAGIGPFAI-PAAQKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAR  154 (380)
Q Consensus        86 ~~r~i~~i~~g~~VLDlfcGvG~fsl-~aA~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~  154 (380)
                      .+..+....++.+|||+|||+|.+++ .++..+.+|+++|+++.+++.+++++..++.  ++.++++|+.
T Consensus        14 ~~~~~~~~~~~~~vLDiGcG~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~   81 (209)
T 2p8j_A           14 FLKYCNESNLDKTVLDCGAGGDLPPLSIFVEDGYKTYGIEISDLQLKKAENFSRENNF--KLNISKGDIR   81 (209)
T ss_dssp             HHHHHHHSSSCSEEEEESCCSSSCTHHHHHHTTCEEEEEECCHHHHHHHHHHHHHHTC--CCCEEECCTT
T ss_pred             HHHHHhccCCCCEEEEECCCCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCC--ceEEEECchh
Confidence            34445566788999999999999854 4556678999999999999999999987663  3778887764

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}

Probab=98.46  E-value=7e-07  Score=87.11  Aligned_cols=87  Identities=15%  Similarity=0.145  Sum_probs=63.0

Q ss_pred             CCeEEEEccCceeecChHHHHHHHHHhc--cCCCCeEEEecCCcchhHHHHhhcC--CEEEEEeCCHHHHHHHHHHHHHc
Q 046527           65 YGATFKLDYSLVYWNSRLEHEHLRIISQ--FRPGETICDMFAGIGPFAIPAAQKG--CIVFANDLNPDSVHYLKINAKVN  140 (380)
Q Consensus        65 ~G~~F~id~~~ff~n~rl~tE~~r~i~~--i~~g~~VLDlfcGvG~fsl~aA~~g--~~V~avDlnp~Aie~a~~Na~lN  140 (380)
                      .+..+...++.|.+.. +......++..  ..++.+|||+|||+|.+++.+++.+  .+|+++|+++.+++.+++|+..+
T Consensus       165 ~~~~~~~~~gvf~~~~-~d~~~~~ll~~l~~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~  243 (343)
T 2pjd_A          165 DGLTVKTLPGVFSRDG-LDVGSQLLLSTLTPHTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAAN  243 (343)
T ss_dssp             TTEEEEECTTCTTSSS-CCHHHHHHHHHSCTTCCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHT
T ss_pred             cceEEEecCCccCCCC-CcHHHHHHHHhcCcCCCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHh
Confidence            5666666666555432 22122222222  2356799999999999999999886  49999999999999999999999


Q ss_pred             CCCCcEEEEeccHH
Q 046527          141 KVDNYVRAYNMDAR  154 (380)
Q Consensus       141 ~l~~ri~~~~~Da~  154 (380)
                      ++.  ++++.+|+.
T Consensus       244 ~~~--~~~~~~d~~  255 (343)
T 2pjd_A          244 GVE--GEVFASNVF  255 (343)
T ss_dssp             TCC--CEEEECSTT
T ss_pred             CCC--CEEEEcccc
Confidence            886  356666653

>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*

Probab=98.46  E-value=1.7e-06  Score=83.30  Aligned_cols=65  Identities=12%  Similarity=-0.014  Sum_probs=54.5

Q ss_pred             cCCCCeEEEecCCcchhHHHHhhc--CCEEEEEeCCHHHHHHHHHHHHH---cCCCCcEEEEeccHHHHH
Q 046527           93 FRPGETICDMFAGIGPFAIPAAQK--GCIVFANDLNPDSVHYLKINAKV---NKVDNYVRAYNMDAREFI  157 (380)
Q Consensus        93 i~~g~~VLDlfcGvG~fsl~aA~~--g~~V~avDlnp~Aie~a~~Na~l---N~l~~ri~~~~~Da~e~l  157 (380)
                      ..++.+|||+|||.|.++..+++.  ..+|+++|+++.+++.+++++..   .....+++++.+|+.+++
T Consensus        93 ~~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~  162 (304)
T 3bwc_A           93 HPKPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFV  162 (304)
T ss_dssp             SSSCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHH
T ss_pred             CCCCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHH
Confidence            356789999999999999999987  35999999999999999998742   222356999999998875

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=98.46  E-value=6.5e-07  Score=81.97  Aligned_cols=61  Identities=25%  Similarity=0.254  Sum_probs=57.0

Q ss_pred             ccCCCCeEEEecCCcchhHHHHhhcC-CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccH
Q 046527           92 QFRPGETICDMFAGIGPFAIPAAQKG-CIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDA  153 (380)
Q Consensus        92 ~i~~g~~VLDlfcGvG~fsl~aA~~g-~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da  153 (380)
                      .+.++.+|||+|||+|.+++.+++.+ .+|+++|+++.+++.|++|+..+++.+ ++++.+|+
T Consensus        88 ~~~~~~~vLdiG~G~G~~~~~la~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~-v~~~~~d~  149 (235)
T 1jg1_A           88 NLKPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGVKN-VHVILGDG  149 (235)
T ss_dssp             TCCTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTCCS-EEEEESCG
T ss_pred             CCCCCCEEEEEeCCcCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCC-cEEEECCc
Confidence            56788999999999999999999886 799999999999999999999999987 99999997

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=98.46  E-value=5.5e-07  Score=81.57  Aligned_cols=62  Identities=15%  Similarity=0.153  Sum_probs=56.2

Q ss_pred             hccCCCCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHH
Q 046527           91 SQFRPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDARE  155 (380)
Q Consensus        91 ~~i~~g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e  155 (380)
                      ..+.++.+|||+|||+|.++..++..+.+|+++|+++.+++.+++++..++   +++++++|+.+
T Consensus        66 ~~~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~---~v~~~~~d~~~  127 (231)
T 1vbf_A           66 LDLHKGQKVLEIGTGIGYYTALIAEIVDKVVSVEINEKMYNYASKLLSYYN---NIKLILGDGTL  127 (231)
T ss_dssp             TTCCTTCEEEEECCTTSHHHHHHHHHSSEEEEEESCHHHHHHHHHHHTTCS---SEEEEESCGGG
T ss_pred             cCCCCCCEEEEEcCCCCHHHHHHHHHcCEEEEEeCCHHHHHHHHHHHhhcC---CeEEEECCccc
Confidence            356788999999999999999999988999999999999999999998776   48999999865

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A

Probab=98.46  E-value=3.2e-07  Score=82.47  Aligned_cols=61  Identities=10%  Similarity=0.102  Sum_probs=55.1

Q ss_pred             cCCCCeEEEecCCcchhHHHHhhcC--CEEEEEeCCHHHHHHHHHHHHHcCCCC----cEEEEeccH
Q 046527           93 FRPGETICDMFAGIGPFAIPAAQKG--CIVFANDLNPDSVHYLKINAKVNKVDN----YVRAYNMDA  153 (380)
Q Consensus        93 i~~g~~VLDlfcGvG~fsl~aA~~g--~~V~avDlnp~Aie~a~~Na~lN~l~~----ri~~~~~Da  153 (380)
                      ..++.+|||+|||+|.++..+++.+  .+|+++|+++.+++.+++++..+++.+    +++++++|+
T Consensus        27 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~   93 (219)
T 3jwg_A           27 SVNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSL   93 (219)
T ss_dssp             HTTCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCS
T ss_pred             hcCCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCcc
Confidence            3578899999999999999999876  599999999999999999999888874    699999986

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=98.46  E-value=5.5e-07  Score=83.51  Aligned_cols=63  Identities=24%  Similarity=0.249  Sum_probs=57.9

Q ss_pred             cCCCCeEEEecCCcchhHHHHhhc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHH
Q 046527           93 FRPGETICDMFAGIGPFAIPAAQK-GCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDARE  155 (380)
Q Consensus        93 i~~g~~VLDlfcGvG~fsl~aA~~-g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e  155 (380)
                      +.++.+|||+|||+|.++..+++. +++|+++|+++.+++.+++++..+++.++++++.+|+.+
T Consensus        59 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~  122 (273)
T 3bus_A           59 VRSGDRVLDVGCGIGKPAVRLATARDVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMD  122 (273)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHSCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTS
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECcccc
Confidence            468899999999999999999975 779999999999999999999999998889999999864

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17

Probab=98.46  E-value=6.5e-07  Score=87.10  Aligned_cols=67  Identities=10%  Similarity=0.001  Sum_probs=57.1

Q ss_pred             cCCCCeEEEecCCcchhHHHHhhc--CCEEEEEeCCHHHHHHHHHHHHHc--CC-CCcEEEEeccHHHHHHH
Q 046527           93 FRPGETICDMFAGIGPFAIPAAQK--GCIVFANDLNPDSVHYLKINAKVN--KV-DNYVRAYNMDAREFIRQ  159 (380)
Q Consensus        93 i~~g~~VLDlfcGvG~fsl~aA~~--g~~V~avDlnp~Aie~a~~Na~lN--~l-~~ri~~~~~Da~e~l~~  159 (380)
                      ...+.+|||+|||+|.++..+++.  ..+|+++|+++.+++.|++|+...  ++ ..+++++.+|+.+++..
T Consensus       106 ~~~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~  177 (314)
T 2b2c_A          106 HPDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKN  177 (314)
T ss_dssp             SSSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHH
T ss_pred             CCCCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHh
Confidence            356689999999999999999987  359999999999999999998653  44 45799999999987643

>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45

Probab=98.45  E-value=1.1e-07  Score=92.76  Aligned_cols=78  Identities=9%  Similarity=0.003  Sum_probs=59.9

Q ss_pred             ceeecChHHHHHH-HHHh---ccCCCCeEEEecCCcchhHHHHhhcC-------CEEEEEeCCHHHHHHHHHHHHHcCCC
Q 046527           75 LVYWNSRLEHEHL-RIIS---QFRPGETICDMFAGIGPFAIPAAQKG-------CIVFANDLNPDSVHYLKINAKVNKVD  143 (380)
Q Consensus        75 ~ff~n~rl~tE~~-r~i~---~i~~g~~VLDlfcGvG~fsl~aA~~g-------~~V~avDlnp~Aie~a~~Na~lN~l~  143 (380)
                      ..|+.++.....+ .++.   ...++.+|||+|||+|.|++.+++..       ..|+|+|+++.+++.|+.|+..+++ 
T Consensus       106 g~~~TP~~i~~~~~~ll~~l~~~~~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~-  184 (344)
T 2f8l_A          106 NHQMTPDSIGFIVAYLLEKVIQKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQ-  184 (344)
T ss_dssp             GGCCCCHHHHHHHHHHHHHHHTTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTC-
T ss_pred             CcCCChHHHHHHHHHHHHHhcCCCCCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCC-
Confidence            3455777544432 2222   23467899999999999999998763       6899999999999999999999888 


Q ss_pred             CcEEEEeccHH
Q 046527          144 NYVRAYNMDAR  154 (380)
Q Consensus       144 ~ri~~~~~Da~  154 (380)
                       .+.++++|+.
T Consensus       185 -~~~i~~~D~l  194 (344)
T 2f8l_A          185 -KMTLLHQDGL  194 (344)
T ss_dssp             -CCEEEESCTT
T ss_pred             -CceEEECCCC
Confidence             3678888763

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41

Probab=98.45  E-value=6.8e-07  Score=82.55  Aligned_cols=63  Identities=24%  Similarity=0.153  Sum_probs=57.0

Q ss_pred             ccCCCCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHH
Q 046527           92 QFRPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDARE  155 (380)
Q Consensus        92 ~i~~g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e  155 (380)
                      ...++.+|||+|||+|.++..++..+.+|+++|+++.+++.+++++..+++.+ +.++.+|+.+
T Consensus        34 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~-v~~~~~d~~~   96 (260)
T 1vl5_A           34 ALKGNEEVLDVATGGGHVANAFAPFVKKVVAFDLTEDILKVARAFIEGNGHQQ-VEYVQGDAEQ   96 (260)
T ss_dssp             TCCSCCEEEEETCTTCHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHTTCCS-EEEEECCC-C
T ss_pred             CCCCCCEEEEEeCCCCHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHhcCCCc-eEEEEecHHh
Confidence            45688999999999999999999998899999999999999999999998875 9999999754

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=98.45  E-value=7.3e-07  Score=79.89  Aligned_cols=63  Identities=19%  Similarity=0.181  Sum_probs=56.9

Q ss_pred             hccCCCCeEEEecCCcchhHHHHhhcC---CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHH
Q 046527           91 SQFRPGETICDMFAGIGPFAIPAAQKG---CIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAR  154 (380)
Q Consensus        91 ~~i~~g~~VLDlfcGvG~fsl~aA~~g---~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~  154 (380)
                      ....++.+|||+|||+|.++..+++.+   .+|+++|+++.+++.+++++..+++.+ ++++++|+.
T Consensus        73 ~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~-v~~~~~d~~  138 (215)
T 2yxe_A           73 LDLKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDN-VIVIVGDGT  138 (215)
T ss_dssp             TTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCTT-EEEEESCGG
T ss_pred             hCCCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCC-eEEEECCcc
Confidence            356788999999999999999999875   799999999999999999999988876 999999874

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=98.45  E-value=1.4e-06  Score=75.69  Aligned_cols=56  Identities=25%  Similarity=0.227  Sum_probs=48.9

Q ss_pred             cCCCCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHH
Q 046527           93 FRPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAR  154 (380)
Q Consensus        93 i~~g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~  154 (380)
                      +.++.+|||+|||+|.++..++..+.+|+++|+++.+++.++++..      ++.++++|+.
T Consensus        44 ~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~~~~~~~~a~~~~~------~~~~~~~d~~   99 (195)
T 3cgg_A           44 APRGAKILDAGCGQGRIGGYLSKQGHDVLGTDLDPILIDYAKQDFP------EARWVVGDLS   99 (195)
T ss_dssp             SCTTCEEEEETCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHHCT------TSEEEECCTT
T ss_pred             ccCCCeEEEECCCCCHHHHHHHHCCCcEEEEcCCHHHHHHHHHhCC------CCcEEEcccc
Confidence            5788999999999999999999998999999999999999998852      2677777654

>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=98.45  E-value=5.7e-07  Score=83.10  Aligned_cols=63  Identities=11%  Similarity=-0.056  Sum_probs=55.2

Q ss_pred             cCCCCeEEEecCCcchhHHHHhhcC-CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHHH
Q 046527           93 FRPGETICDMFAGIGPFAIPAAQKG-CIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFI  157 (380)
Q Consensus        93 i~~g~~VLDlfcGvG~fsl~aA~~g-~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~l  157 (380)
                      ..+|.+|||+|||+|.++..+++.. .+|++||++|.+++.|+++++..+.  .++++.+|+.+.+
T Consensus        58 ~~~G~rVLdiG~G~G~~~~~~~~~~~~~v~~id~~~~~~~~a~~~~~~~~~--~~~~~~~~a~~~~  121 (236)
T 3orh_A           58 SSKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTH--KVIPLKGLWEDVA  121 (236)
T ss_dssp             TTTCEEEEEECCTTSHHHHHHTTSCEEEEEEEECCHHHHHHHHHHGGGCSS--EEEEEESCHHHHG
T ss_pred             ccCCCeEEEECCCccHHHHHHHHhCCcEEEEEeCCHHHHHHHHHHHhhCCC--ceEEEeehHHhhc
Confidence            3678999999999999999998864 5899999999999999999987764  4789999998765

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A

Probab=98.44  E-value=2.8e-07  Score=86.95  Aligned_cols=78  Identities=14%  Similarity=0.065  Sum_probs=62.2

Q ss_pred             eeecChHHHHHHHHHhccCCCCeEEEecCCcchhHHHHhhc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEecc
Q 046527           76 VYWNSRLEHEHLRIISQFRPGETICDMFAGIGPFAIPAAQK---GCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMD  152 (380)
Q Consensus        76 ff~n~rl~tE~~r~i~~i~~g~~VLDlfcGvG~fsl~aA~~---g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~D  152 (380)
                      +|+++......+..+..+.++.+|||+|||+|.+++.++..   +++|+|+|+++.+++.|++++..++.  +++++++|
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~--~v~~~~~d   80 (284)
T 3gu3_A            3 LYYNDDYVSFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPY--DSEFLEGD   80 (284)
T ss_dssp             TTCCHHHHHHHHHTTSCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSS--EEEEEESC
T ss_pred             cccchHHHHHHHHHHhccCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCC--ceEEEEcc
Confidence            34444433333333445678899999999999999999987   57999999999999999999987765  59999999


Q ss_pred             HHH
Q 046527          153 ARE  155 (380)
Q Consensus       153 a~e  155 (380)
                      +.+
T Consensus        81 ~~~   83 (284)
T 3gu3_A           81 ATE   83 (284)
T ss_dssp             TTT
T ss_pred             hhh
Confidence            875

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=98.44  E-value=5e-07  Score=94.36  Aligned_cols=68  Identities=18%  Similarity=0.171  Sum_probs=60.9

Q ss_pred             ccCCCCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHHHHHH
Q 046527           92 QFRPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFIRQL  160 (380)
Q Consensus        92 ~i~~g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~l~~l  160 (380)
                      .+.++-+|||+|||.|.++.++|+.|+.|+|||.++.+++.|+..+..++.-+ +.+.++|++++....
T Consensus        63 ~~~~~~~vLDvGCG~G~~~~~la~~ga~V~giD~~~~~i~~a~~~a~~~~~~~-~~~~~~~~~~~~~~~  130 (569)
T 4azs_A           63 ALGRPLNVLDLGCAQGFFSLSLASKGATIVGIDFQQENINVCRALAEENPDFA-AEFRVGRIEEVIAAL  130 (569)
T ss_dssp             HHTSCCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTSTTSE-EEEEECCHHHHHHHC
T ss_pred             hcCCCCeEEEECCCCcHHHHHHHhCCCEEEEECCCHHHHHHHHHHHHhcCCCc-eEEEECCHHHHhhhc
Confidence            34567799999999999999999999999999999999999999999887655 899999999887553

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}

Probab=98.44  E-value=5e-07  Score=80.12  Aligned_cols=61  Identities=18%  Similarity=0.211  Sum_probs=55.4

Q ss_pred             CCCCeEEEecCCcchhHHHHhhc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHH
Q 046527           94 RPGETICDMFAGIGPFAIPAAQK-GCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDARE  155 (380)
Q Consensus        94 ~~g~~VLDlfcGvG~fsl~aA~~-g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e  155 (380)
                      .++ +|||+|||+|.++..+++. +.+|+++|+++.+++.|++++..+++.++++++++|+.+
T Consensus        43 ~~~-~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~  104 (219)
T 3dlc_A           43 TAG-TCIDIGSGPGALSIALAKQSDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHN  104 (219)
T ss_dssp             CEE-EEEEETCTTSHHHHHHHHHSEEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTB
T ss_pred             CCC-EEEEECCCCCHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHH
Confidence            445 9999999999999999987 569999999999999999999999998789999999753

>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}

Probab=98.44  E-value=3.8e-07  Score=86.54  Aligned_cols=61  Identities=25%  Similarity=0.362  Sum_probs=48.4

Q ss_pred             cCCCCeEEEecCCcchhHHHHhhcCC-EEEEEeC-CHHHHHHHHHHH-----HHcCCC----CcEEEEeccH
Q 046527           93 FRPGETICDMFAGIGPFAIPAAQKGC-IVFANDL-NPDSVHYLKINA-----KVNKVD----NYVRAYNMDA  153 (380)
Q Consensus        93 i~~g~~VLDlfcGvG~fsl~aA~~g~-~V~avDl-np~Aie~a~~Na-----~lN~l~----~ri~~~~~Da  153 (380)
                      ..++.+|||+|||+|.+++.+++.|+ +|+++|+ ++.+++.|++|+     +.+++.    +++++...|.
T Consensus        77 ~~~~~~vLDlG~G~G~~~~~~a~~~~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~~  148 (281)
T 3bzb_A           77 LIAGKTVCELGAGAGLVSIVAFLAGADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPYRW  148 (281)
T ss_dssp             GTTTCEEEETTCTTSHHHHHHHHTTCSEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEECCT
T ss_pred             hcCCCeEEEecccccHHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEecC
Confidence            35788999999999999999999887 9999999 899999999999     455554    3577776554

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=98.44  E-value=4.5e-07  Score=83.08  Aligned_cols=60  Identities=22%  Similarity=0.271  Sum_probs=55.0

Q ss_pred             CCCCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHH
Q 046527           94 RPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDARE  155 (380)
Q Consensus        94 ~~g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e  155 (380)
                      .++.+|||+|||+|.+++.+++.|.+|+|+|+++.+++.|++++..+++  +++++++|+.+
T Consensus        40 ~~~~~vLDlGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~~~~~--~v~~~~~d~~~   99 (252)
T 1wzn_A           40 REVRRVLDLACGTGIPTLELAERGYEVVGLDLHEEMLRVARRKAKERNL--KIEFLQGDVLE   99 (252)
T ss_dssp             SCCCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC--CCEEEESCGGG
T ss_pred             cCCCEEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHhcCC--ceEEEECChhh
Confidence            4678999999999999999999999999999999999999999988876  48899999875

>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*

Probab=98.43  E-value=2.8e-07  Score=86.72  Aligned_cols=80  Identities=19%  Similarity=0.207  Sum_probs=60.2

Q ss_pred             ccCceeecChHHHHHHHHHhccCCCCeEEEecCCcchhHHHHhhcC-CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEe
Q 046527           72 DYSLVYWNSRLEHEHLRIISQFRPGETICDMFAGIGPFAIPAAQKG-CIVFANDLNPDSVHYLKINAKVNKVDNYVRAYN  150 (380)
Q Consensus        72 d~~~ff~n~rl~tE~~r~i~~i~~g~~VLDlfcGvG~fsl~aA~~g-~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~  150 (380)
                      .++.-|+.++...+.+.....+.++++|||+|||+|.++..++..+ ++|+|+|+++.+++.++++    + ..++++++
T Consensus         8 ~~GQnfl~d~~i~~~iv~~~~~~~~~~VLDiG~G~G~lt~~L~~~~~~~v~avEid~~~~~~~~~~----~-~~~v~~i~   82 (249)
T 3ftd_A            8 SFGQHLLVSEGVLKKIAEELNIEEGNTVVEVGGGTGNLTKVLLQHPLKKLYVIELDREMVENLKSI----G-DERLEVIN   82 (249)
T ss_dssp             CCCSSCEECHHHHHHHHHHTTCCTTCEEEEEESCHHHHHHHHTTSCCSEEEEECCCHHHHHHHTTS----C-CTTEEEEC
T ss_pred             cccccccCCHHHHHHHHHhcCCCCcCEEEEEcCchHHHHHHHHHcCCCeEEEEECCHHHHHHHHhc----c-CCCeEEEE
Confidence            3444344444333333323446688999999999999999999996 7999999999999999987    2 23589999


Q ss_pred             ccHHHH
Q 046527          151 MDAREF  156 (380)
Q Consensus       151 ~Da~e~  156 (380)
                      +|+.++
T Consensus        83 ~D~~~~   88 (249)
T 3ftd_A           83 EDASKF   88 (249)
T ss_dssp             SCTTTC
T ss_pred             cchhhC
Confidence            998653

>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A

Probab=98.43  E-value=4.8e-07  Score=88.64  Aligned_cols=63  Identities=17%  Similarity=0.189  Sum_probs=57.2

Q ss_pred             cCCCCeEEEecCCcchhHHHHhhcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHH
Q 046527           93 FRPGETICDMFAGIGPFAIPAAQKGC-IVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREF  156 (380)
Q Consensus        93 i~~g~~VLDlfcGvG~fsl~aA~~g~-~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~  156 (380)
                      ..++.+|||+|||+|.+++.+++.++ +|+|+|+++ +++.|+++++.|++.++++++++|+.+.
T Consensus        48 ~~~~~~VLDiGcGtG~ls~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~l~~~v~~~~~d~~~~  111 (348)
T 2y1w_A           48 DFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEV  111 (348)
T ss_dssp             GTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-HHHHHHHHHHHTTCTTTEEEEESCTTTC
T ss_pred             cCCcCEEEEcCCCccHHHHHHHhCCCCEEEEECCHH-HHHHHHHHHHHcCCCCcEEEEEcchhhC
Confidence            45789999999999999999999876 999999997 7899999999999987899999998753

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}

Probab=98.43  E-value=5.6e-07  Score=80.58  Aligned_cols=62  Identities=19%  Similarity=0.230  Sum_probs=56.6

Q ss_pred             ccCCCCeEEEecCCcchhHHHHhhcC---CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHH
Q 046527           92 QFRPGETICDMFAGIGPFAIPAAQKG---CIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAR  154 (380)
Q Consensus        92 ~i~~g~~VLDlfcGvG~fsl~aA~~g---~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~  154 (380)
                      .+.++.+|||+|||+|.++..+++.+   .+|+++|+++.+++.+++++..+++.+ ++++++|+.
T Consensus        34 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-~~~~~~d~~   98 (219)
T 3dh0_A           34 GLKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKN-VEVLKSEEN   98 (219)
T ss_dssp             TCCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCTT-EEEEECBTT
T ss_pred             CCCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCc-EEEEecccc
Confidence            46788999999999999999999886   699999999999999999999999885 999999875

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18

Probab=98.42  E-value=7.2e-07  Score=84.01  Aligned_cols=64  Identities=14%  Similarity=0.023  Sum_probs=58.9

Q ss_pred             ccCCCCeEEEecCCcchhHHHHhhc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHH
Q 046527           92 QFRPGETICDMFAGIGPFAIPAAQK-GCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDARE  155 (380)
Q Consensus        92 ~i~~g~~VLDlfcGvG~fsl~aA~~-g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e  155 (380)
                      .+.++.+|||+|||+|.++..+++. +++|+++|+++.+++.+++++...++.++++++++|+.+
T Consensus        79 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~  143 (297)
T 2o57_A           79 VLQRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLE  143 (297)
T ss_dssp             CCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTS
T ss_pred             CCCCCCEEEEeCCCCCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCccc
Confidence            4578899999999999999999987 789999999999999999999999998789999999864

>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=98.42  E-value=1.1e-06  Score=80.46  Aligned_cols=63  Identities=11%  Similarity=-0.028  Sum_probs=55.7

Q ss_pred             cCCCCeEEEecCCcchhHHHHhhcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHHH
Q 046527           93 FRPGETICDMFAGIGPFAIPAAQKGC-IVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFI  157 (380)
Q Consensus        93 i~~g~~VLDlfcGvG~fsl~aA~~g~-~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~l  157 (380)
                      ..++.+|||+|||+|.++..++..+. +|+++|+++.+++.|+++++.++  .+++++++|+.+.+
T Consensus        58 ~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~  121 (236)
T 1zx0_A           58 SSKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQT--HKVIPLKGLWEDVA  121 (236)
T ss_dssp             TTTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCS--SEEEEEESCHHHHG
T ss_pred             CCCCCeEEEEeccCCHHHHHHHhcCCCeEEEEcCCHHHHHHHHHHHHhcC--CCeEEEecCHHHhh
Confidence            46788999999999999999988665 99999999999999999988776  35999999998764

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=98.41  E-value=9.9e-07  Score=79.74  Aligned_cols=63  Identities=22%  Similarity=0.160  Sum_probs=55.3

Q ss_pred             ccCCCCeEEEecCCcchhHHHHhhc-C--CEEEEEeCCHHHHHHHHHHHHHcCC----CCcEEEEeccHH
Q 046527           92 QFRPGETICDMFAGIGPFAIPAAQK-G--CIVFANDLNPDSVHYLKINAKVNKV----DNYVRAYNMDAR  154 (380)
Q Consensus        92 ~i~~g~~VLDlfcGvG~fsl~aA~~-g--~~V~avDlnp~Aie~a~~Na~lN~l----~~ri~~~~~Da~  154 (380)
                      .+.++.+|||+|||+|.++..+++. +  .+|+++|+++.+++.+++|+..+++    .++++++++|+.
T Consensus        74 ~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~  143 (226)
T 1i1n_A           74 QLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGR  143 (226)
T ss_dssp             TSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGG
T ss_pred             hCCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcc
Confidence            3678999999999999999999976 3  5999999999999999999998775    345999999975

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=98.41  E-value=3.7e-07  Score=83.76  Aligned_cols=61  Identities=16%  Similarity=0.164  Sum_probs=52.8

Q ss_pred             ccCCCCeEEEecCCcchhHHHHhhc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHH
Q 046527           92 QFRPGETICDMFAGIGPFAIPAAQK-GCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDARE  155 (380)
Q Consensus        92 ~i~~g~~VLDlfcGvG~fsl~aA~~-g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e  155 (380)
                      .+.++.+|||+|||+|.++..+++. +++|+++|+++.+++.+++++..+   .+++++++|+.+
T Consensus        52 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~---~~~~~~~~d~~~  113 (266)
T 3ujc_A           52 ELNENSKVLDIGSGLGGGCMYINEKYGAHTHGIDICSNIVNMANERVSGN---NKIIFEANDILT  113 (266)
T ss_dssp             CCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHTCCSC---TTEEEEECCTTT
T ss_pred             CCCCCCEEEEECCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhhcC---CCeEEEECcccc
Confidence            3567889999999999999999987 889999999999999999887654   458999888753

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}

Probab=98.41  E-value=1.5e-06  Score=84.94  Aligned_cols=61  Identities=15%  Similarity=0.038  Sum_probs=53.3

Q ss_pred             eEEEecCCcchhHHHHhhc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHHHHH
Q 046527           98 TICDMFAGIGPFAIPAAQK--GCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFIRQ  159 (380)
Q Consensus        98 ~VLDlfcGvG~fsl~aA~~--g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~l~~  159 (380)
                      +|||+|||.|.++..+++.  +.+|++||+++.+++.|++++..+. ..+++++.+|+++++..
T Consensus        92 rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~~-~~rv~v~~~Da~~~l~~  154 (317)
T 3gjy_A           92 RITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIPR-APRVKIRVDDARMVAES  154 (317)
T ss_dssp             EEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCCC-TTTEEEEESCHHHHHHT
T ss_pred             EEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccccC-CCceEEEECcHHHHHhh
Confidence            9999999999999999983  5699999999999999999986543 35699999999998743

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}

Probab=98.41  E-value=4.5e-07  Score=82.21  Aligned_cols=59  Identities=19%  Similarity=0.102  Sum_probs=51.8

Q ss_pred             cCCCCeEEEecCCcchhHHHHhhc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHH
Q 046527           93 FRPGETICDMFAGIGPFAIPAAQK--GCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAR  154 (380)
Q Consensus        93 i~~g~~VLDlfcGvG~fsl~aA~~--g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~  154 (380)
                      ..++.+|||+|||+|.++..++..  +.+|+++|+++.+++.+++++..++   +++++++|+.
T Consensus        42 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~---~~~~~~~d~~  102 (234)
T 3dtn_A           42 DTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNL---KVKYIEADYS  102 (234)
T ss_dssp             SCSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCSCT---TEEEEESCTT
T ss_pred             CCCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhccCC---CEEEEeCchh
Confidence            457789999999999999999988  6799999999999999999986554   5888888764

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}

Probab=98.40  E-value=5.7e-07  Score=79.68  Aligned_cols=61  Identities=21%  Similarity=0.188  Sum_probs=52.0

Q ss_pred             hccCCCCeEEEecCCcchhHHHHhhcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHH
Q 046527           91 SQFRPGETICDMFAGIGPFAIPAAQKGC-IVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAR  154 (380)
Q Consensus        91 ~~i~~g~~VLDlfcGvG~fsl~aA~~g~-~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~  154 (380)
                      ..+.++.+|||+|||+|.+++.+++.+. +|+++|+++.+++.+++++..  . .+++++++|+.
T Consensus        38 ~~~~~~~~vLdiGcG~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~--~-~~i~~~~~d~~   99 (215)
T 2pxx_A           38 PELRPEDRILVLGCGNSALSYELFLGGFPNVTSVDYSSVVVAAMQACYAH--V-PQLRWETMDVR   99 (215)
T ss_dssp             GGCCTTCCEEEETCTTCSHHHHHHHTTCCCEEEEESCHHHHHHHHHHTTT--C-TTCEEEECCTT
T ss_pred             HhcCCCCeEEEECCCCcHHHHHHHHcCCCcEEEEeCCHHHHHHHHHhccc--C-CCcEEEEcchh
Confidence            3457889999999999999999999876 999999999999999999753  2 34788888764

>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}

Probab=98.39  E-value=3.1e-07  Score=95.84  Aligned_cols=79  Identities=18%  Similarity=0.249  Sum_probs=62.9

Q ss_pred             eeecChHHHHHH-HHHhc---cCCCCeEEEecCCcchhHHHHhhc-----CCEEEEEeCCHHHHHHHHHHHHHcCCC-Cc
Q 046527           76 VYWNSRLEHEHL-RIISQ---FRPGETICDMFAGIGPFAIPAAQK-----GCIVFANDLNPDSVHYLKINAKVNKVD-NY  145 (380)
Q Consensus        76 ff~n~rl~tE~~-r~i~~---i~~g~~VLDlfcGvG~fsl~aA~~-----g~~V~avDlnp~Aie~a~~Na~lN~l~-~r  145 (380)
                      -|+.|+...+.+ +++..   ..++.+|+|++||+|.|.+.+++.     ...++|+|+++.++..|+.|+.++++. +.
T Consensus       198 ~fyTP~~Vv~lmv~ll~~~~~~~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~~  277 (542)
T 3lkd_A          198 EFYTPQPVAKLMTQIAFLGREDKQGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVPIEN  277 (542)
T ss_dssp             SCCCCHHHHHHHHHHHHTTCTTCTTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCCGGG
T ss_pred             eecccHHHHHHHHHHHhcccCCCCCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCCcCc
Confidence            566777665554 33332   346889999999999999998876     358999999999999999999999996 35


Q ss_pred             EEEEeccHH
Q 046527          146 VRAYNMDAR  154 (380)
Q Consensus       146 i~~~~~Da~  154 (380)
                      +.+.++|..
T Consensus       278 ~~I~~gDtL  286 (542)
T 3lkd_A          278 QFLHNADTL  286 (542)
T ss_dssp             EEEEESCTT
T ss_pred             cceEeccee
Confidence            788888754

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*

Probab=98.39  E-value=5.3e-07  Score=84.76  Aligned_cols=63  Identities=10%  Similarity=0.074  Sum_probs=52.4

Q ss_pred             CCCCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHHHHHH----------cC------CCCcEEEEeccHHHH
Q 046527           94 RPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKV----------NK------VDNYVRAYNMDAREF  156 (380)
Q Consensus        94 ~~g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~l----------N~------l~~ri~~~~~Da~e~  156 (380)
                      .++.+|||+|||+|.++..+|+.|.+|+|+|+|+.+++.|++....          ++      ...+++++++|+.+.
T Consensus        67 ~~~~~vLD~GCG~G~~~~~La~~G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~l  145 (252)
T 2gb4_A           67 QSGLRVFFPLCGKAIEMKWFADRGHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFDL  145 (252)
T ss_dssp             CCSCEEEETTCTTCTHHHHHHHTTCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTTG
T ss_pred             CCCCeEEEeCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECccccC
Confidence            5788999999999999999999999999999999999999866431          11      123599999998753

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}

Probab=98.38  E-value=2.1e-06  Score=73.84  Aligned_cols=55  Identities=16%  Similarity=0.067  Sum_probs=48.9

Q ss_pred             ccCCCCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEecc
Q 046527           92 QFRPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMD  152 (380)
Q Consensus        92 ~i~~g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~D  152 (380)
                      .+.++.+|||+|||+|.++..+++.+.+|+++|+++.+++.++++     .. +++++++|
T Consensus        14 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~-----~~-~v~~~~~d   68 (170)
T 3i9f_A           14 FEGKKGVIVDYGCGNGFYCKYLLEFATKLYCIDINVIALKEVKEK-----FD-SVITLSDP   68 (170)
T ss_dssp             HSSCCEEEEEETCTTCTTHHHHHTTEEEEEEECSCHHHHHHHHHH-----CT-TSEEESSG
T ss_pred             CcCCCCeEEEECCCCCHHHHHHHhhcCeEEEEeCCHHHHHHHHHh-----CC-CcEEEeCC
Confidence            357788999999999999999999877999999999999999998     23 48888888

>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}

Probab=98.38  E-value=6.4e-07  Score=92.01  Aligned_cols=62  Identities=18%  Similarity=0.192  Sum_probs=56.8

Q ss_pred             cCCCCeEEEecCCcchhHHHHhhcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHH
Q 046527           93 FRPGETICDMFAGIGPFAIPAAQKGC-IVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDARE  155 (380)
Q Consensus        93 i~~g~~VLDlfcGvG~fsl~aA~~g~-~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e  155 (380)
                      ..++.+|||+|||+|.+++.+++.+. +|+|+|+++ +++.|++|++.|++.++++++++|+++
T Consensus       156 ~~~~~~VLDiGcGtG~la~~la~~~~~~V~gvD~s~-~l~~A~~~~~~~gl~~~v~~~~~d~~~  218 (480)
T 3b3j_A          156 DFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEE  218 (480)
T ss_dssp             GTTTCEEEEESCSTTHHHHHHHHTTCSEEEEEECHH-HHHHHHHHHHHTTCTTTEEEEESCTTT
T ss_pred             hcCCCEEEEecCcccHHHHHHHHcCCCEEEEEEcHH-HHHHHHHHHHHcCCCCcEEEEECchhh
Confidence            35788999999999999999999865 999999999 999999999999998789999999875

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*

Probab=98.36  E-value=7.2e-07  Score=83.33  Aligned_cols=64  Identities=17%  Similarity=0.158  Sum_probs=58.1

Q ss_pred             ccCCCCeEEEecCCcchhHHHHhhcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHH
Q 046527           92 QFRPGETICDMFAGIGPFAIPAAQKGC-IVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDARE  155 (380)
Q Consensus        92 ~i~~g~~VLDlfcGvG~fsl~aA~~g~-~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e  155 (380)
                      .+.++.+|||+|||+|.++..+++.+. +|+|+|+++.+++.|++++..+++..++.++++|+.+
T Consensus        61 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  125 (298)
T 1ri5_A           61 YTKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYG  125 (298)
T ss_dssp             HCCTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTT
T ss_pred             hCCCCCeEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCccc
Confidence            357889999999999999999988876 9999999999999999999988887779999999865

>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*

Probab=98.35  E-value=2.2e-06  Score=81.77  Aligned_cols=66  Identities=15%  Similarity=0.110  Sum_probs=55.9

Q ss_pred             cCCCCeEEEecCCcchhHHHHhhcC--CEEEEEeCCHHHHHHHHHHHHHcC--C-CCcEEEEeccHHHHHH
Q 046527           93 FRPGETICDMFAGIGPFAIPAAQKG--CIVFANDLNPDSVHYLKINAKVNK--V-DNYVRAYNMDAREFIR  158 (380)
Q Consensus        93 i~~g~~VLDlfcGvG~fsl~aA~~g--~~V~avDlnp~Aie~a~~Na~lN~--l-~~ri~~~~~Da~e~l~  158 (380)
                      ..++.+|||+|||.|.++..+++..  .+|+++|+++.+++.+++++..++  + ..+++++.+|+.+++.
T Consensus        76 ~~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~  146 (283)
T 2i7c_A           76 SKEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLE  146 (283)
T ss_dssp             SSSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHH
T ss_pred             CCCCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHH
Confidence            3467899999999999999999873  599999999999999999976542  2 3569999999998764

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*

Probab=98.35  E-value=7.5e-07  Score=84.38  Aligned_cols=61  Identities=16%  Similarity=0.210  Sum_probs=54.4

Q ss_pred             CCCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCC--CcEEEEeccHHH
Q 046527           95 PGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKVD--NYVRAYNMDARE  155 (380)
Q Consensus        95 ~g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~lN~l~--~ri~~~~~Da~e  155 (380)
                      ++.+|||+|||+|.++..+++.+.+|+++|+++.+++.|++++..+++.  .+++++++|+.+
T Consensus        82 ~~~~vLDlGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~  144 (299)
T 3g2m_A           82 VSGPVLELAAGMGRLTFPFLDLGWEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSA  144 (299)
T ss_dssp             CCSCEEEETCTTTTTHHHHHTTTCCEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTB
T ss_pred             CCCcEEEEeccCCHHHHHHHHcCCeEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhc
Confidence            3459999999999999999999999999999999999999999887752  459999999864

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=98.33  E-value=1e-06  Score=78.32  Aligned_cols=64  Identities=14%  Similarity=0.073  Sum_probs=54.7

Q ss_pred             HHHhccCCCCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHH
Q 046527           88 RIISQFRPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREF  156 (380)
Q Consensus        88 r~i~~i~~g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~  156 (380)
                      ..+..+.++.+|||+|||+|.++..++..+.+|+++|+++.+++.+++    ++..+ ++++++|+.+.
T Consensus        39 ~~l~~~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~----~~~~~-~~~~~~d~~~~  102 (218)
T 3ou2_A           39 ERLRAGNIRGDVLELASGTGYWTRHLSGLADRVTALDGSAEMIAEAGR----HGLDN-VEFRQQDLFDW  102 (218)
T ss_dssp             HHHTTTTSCSEEEEESCTTSHHHHHHHHHSSEEEEEESCHHHHHHHGG----GCCTT-EEEEECCTTSC
T ss_pred             HHHhcCCCCCeEEEECCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHh----cCCCC-eEEEecccccC
Confidence            334456788899999999999999999999999999999999999998    55554 99999998643

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}

Probab=98.32  E-value=1.3e-06  Score=81.25  Aligned_cols=63  Identities=21%  Similarity=0.364  Sum_probs=57.5

Q ss_pred             ccCCCCeEEEecCCcchhHHHHhhc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHH
Q 046527           92 QFRPGETICDMFAGIGPFAIPAAQK--GCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDARE  155 (380)
Q Consensus        92 ~i~~g~~VLDlfcGvG~fsl~aA~~--g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e  155 (380)
                      .+.++.+|||+|||+|.++..+++.  +.+|+++|+++.+++.+++++..+++.+ ++++.+|+.+
T Consensus        34 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-~~~~~~d~~~   98 (276)
T 3mgg_A           34 VYPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIKN-VKFLQANIFS   98 (276)
T ss_dssp             CCCTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCCS-EEEEECCGGG
T ss_pred             cCCCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCC-cEEEEccccc
Confidence            3468899999999999999999988  5699999999999999999999999876 9999999874

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=98.32  E-value=1.6e-06  Score=76.77  Aligned_cols=54  Identities=15%  Similarity=0.065  Sum_probs=48.4

Q ss_pred             CCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHH
Q 046527           96 GETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDARE  155 (380)
Q Consensus        96 g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e  155 (380)
                      +.+|||+|||+|.++..++..+.+|+|+|+++.+++.++++.     . +++++++|+.+
T Consensus        42 ~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~-----~-~~~~~~~d~~~   95 (203)
T 3h2b_A           42 DGVILDVGSGTGRWTGHLASLGHQIEGLEPATRLVELARQTH-----P-SVTFHHGTITD   95 (203)
T ss_dssp             CSCEEEETCTTCHHHHHHHHTTCCEEEECCCHHHHHHHHHHC-----T-TSEEECCCGGG
T ss_pred             CCeEEEecCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHhC-----C-CCeEEeCcccc
Confidence            789999999999999999999999999999999999999872     2 47888888764

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}

Probab=98.31  E-value=1.1e-06  Score=80.35  Aligned_cols=65  Identities=14%  Similarity=0.022  Sum_probs=55.8

Q ss_pred             HHhccCCCCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHHH
Q 046527           89 IISQFRPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFI  157 (380)
Q Consensus        89 ~i~~i~~g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~l  157 (380)
                      .+..+.++.+|||+|||+|.++..+++.+.+|+++|+++.+++.+++++.   . .+++++++|+.+.-
T Consensus        50 ~~~~~~~~~~vLD~GcG~G~~~~~la~~~~~v~gvD~s~~~~~~a~~~~~---~-~~~~~~~~d~~~~~  114 (245)
T 3ggd_A           50 FELLFNPELPLIDFACGNGTQTKFLSQFFPRVIGLDVSKSALEIAAKENT---A-ANISYRLLDGLVPE  114 (245)
T ss_dssp             HTTTSCTTSCEEEETCTTSHHHHHHHHHSSCEEEEESCHHHHHHHHHHSC---C-TTEEEEECCTTCHH
T ss_pred             HhhccCCCCeEEEEcCCCCHHHHHHHHhCCCEEEEECCHHHHHHHHHhCc---c-cCceEEECcccccc
Confidence            33456788999999999999999999998899999999999999999872   2 25999999997753

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=98.30  E-value=1.1e-06  Score=79.85  Aligned_cols=63  Identities=17%  Similarity=0.203  Sum_probs=54.9

Q ss_pred             ccCCCCeEEEecCCcchhHHHHhhc-C-------CEEEEEeCCHHHHHHHHHHHHHcC-----CCCcEEEEeccHHH
Q 046527           92 QFRPGETICDMFAGIGPFAIPAAQK-G-------CIVFANDLNPDSVHYLKINAKVNK-----VDNYVRAYNMDARE  155 (380)
Q Consensus        92 ~i~~g~~VLDlfcGvG~fsl~aA~~-g-------~~V~avDlnp~Aie~a~~Na~lN~-----l~~ri~~~~~Da~e  155 (380)
                      .+.++.+|||+|||+|.++..+++. +       .+|+++|+++.+++.+++|+..++     .. +++++.+|+.+
T Consensus        81 ~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~-~v~~~~~d~~~  156 (227)
T 1r18_A           81 HLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSG-QLLIVEGDGRK  156 (227)
T ss_dssp             TCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHT-SEEEEESCGGG
T ss_pred             hCCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCC-ceEEEECCccc
Confidence            4678899999999999999999874 3       499999999999999999998776     44 48999999864

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}

Probab=98.30  E-value=2.3e-06  Score=77.52  Aligned_cols=64  Identities=25%  Similarity=0.327  Sum_probs=56.3

Q ss_pred             HHhccCCCCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHH
Q 046527           89 IISQFRPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDARE  155 (380)
Q Consensus        89 ~i~~i~~g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e  155 (380)
                      +...+.++.+|||+|||+|.++..+++. .+|+++|+++.+++.|++++..++.  +++++++|+.+
T Consensus        27 ~~~~~~~~~~vLdiG~G~G~~~~~l~~~-~~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~   90 (243)
T 3d2l_A           27 VLEQVEPGKRIADIGCGTGTATLLLADH-YEVTGVDLSEEMLEIAQEKAMETNR--HVDFWVQDMRE   90 (243)
T ss_dssp             HHHHSCTTCEEEEESCTTCHHHHHHTTT-SEEEEEESCHHHHHHHHHHHHHTTC--CCEEEECCGGG
T ss_pred             HHHHcCCCCeEEEecCCCCHHHHHHhhC-CeEEEEECCHHHHHHHHHhhhhcCC--ceEEEEcChhh
Confidence            3455778899999999999999999988 8999999999999999999988763  48899999764

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}

Probab=98.30  E-value=7.4e-07  Score=84.80  Aligned_cols=50  Identities=16%  Similarity=0.249  Sum_probs=41.5

Q ss_pred             cCCCCeEEEecCCcchhHHHHhhc--CCEEEEEeCCHHHHHHHHHHHHHcCC
Q 046527           93 FRPGETICDMFAGIGPFAIPAAQK--GCIVFANDLNPDSVHYLKINAKVNKV  142 (380)
Q Consensus        93 i~~g~~VLDlfcGvG~fsl~aA~~--g~~V~avDlnp~Aie~a~~Na~lN~l  142 (380)
                      ..++.+|||+|||+|.+++.++..  +.+|+|+|+++.+++.|++|+..++.
T Consensus        44 ~~~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~~~~   95 (292)
T 3g07_A           44 WFRGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLS   95 (292)
T ss_dssp             GTTTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC-----
T ss_pred             hcCCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhhh
Confidence            346889999999999999999987  56999999999999999999876553

>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}

Probab=98.28  E-value=3e-07  Score=82.71  Aligned_cols=62  Identities=15%  Similarity=0.140  Sum_probs=51.2

Q ss_pred             cCCCCeEEEecCCcchhHHHHhhc--CCEEEEEeCCHHHHHHHHH----HHHHcCCCCcEEEEeccHHH
Q 046527           93 FRPGETICDMFAGIGPFAIPAAQK--GCIVFANDLNPDSVHYLKI----NAKVNKVDNYVRAYNMDARE  155 (380)
Q Consensus        93 i~~g~~VLDlfcGvG~fsl~aA~~--g~~V~avDlnp~Aie~a~~----Na~lN~l~~ri~~~~~Da~e  155 (380)
                      ..++.+|||+|||+|.++..+++.  +++|+|+|+++.+++.+.+    ++...++.+ ++++++|+.+
T Consensus        25 ~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~-v~~~~~d~~~   92 (218)
T 3mq2_A           25 SQYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGGLPN-LLYLWATAER   92 (218)
T ss_dssp             TTSSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGTCCTT-EEEEECCSTT
T ss_pred             ccCCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhcCCCc-eEEEecchhh
Confidence            567899999999999999999998  5699999999998876443    333456665 9999999865

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}

Probab=98.27  E-value=1.4e-06  Score=77.76  Aligned_cols=62  Identities=18%  Similarity=0.112  Sum_probs=53.2

Q ss_pred             HHHHhccCCCCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHH
Q 046527           87 LRIISQFRPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDARE  155 (380)
Q Consensus        87 ~r~i~~i~~g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e  155 (380)
                      .+++..+.++.+|||+|||+|.++..+++.+.+|+++|+++.+++.+++++       .+.++++|+.+
T Consensus        35 ~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~-------~~~~~~~d~~~   96 (211)
T 3e23_A           35 TKFLGELPAGAKILELGCGAGYQAEAMLAAGFDVDATDGSPELAAEASRRL-------GRPVRTMLFHQ   96 (211)
T ss_dssp             HHHHTTSCTTCEEEESSCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHH-------TSCCEECCGGG
T ss_pred             HHHHHhcCCCCcEEEECCCCCHHHHHHHHcCCeEEEECCCHHHHHHHHHhc-------CCceEEeeecc
Confidence            345566788999999999999999999999999999999999999999987       25567777753

>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}

Probab=98.27  E-value=9.5e-07  Score=84.03  Aligned_cols=49  Identities=18%  Similarity=0.129  Sum_probs=45.3

Q ss_pred             ccCCCCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHc
Q 046527           92 QFRPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVN  140 (380)
Q Consensus        92 ~i~~g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~lN  140 (380)
                      .+.++.+|||+|||+|.+++.++++|++|+|+|+|+.+++.|++|+..+
T Consensus        42 ~l~~g~~VLDlGcGtG~~a~~La~~g~~V~gvD~S~~ml~~Ar~~~~~~   90 (261)
T 3iv6_A           42 NIVPGSTVAVIGASTRFLIEKALERGASVTVFDFSQRMCDDLAEALADR   90 (261)
T ss_dssp             TCCTTCEEEEECTTCHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTSSS
T ss_pred             CCCCcCEEEEEeCcchHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhc
Confidence            4578899999999999999999999999999999999999999997654

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A

Probab=98.26  E-value=1.5e-06  Score=78.51  Aligned_cols=64  Identities=8%  Similarity=-0.006  Sum_probs=54.8

Q ss_pred             HHHhccCCCCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHH
Q 046527           88 RIISQFRPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREF  156 (380)
Q Consensus        88 r~i~~i~~g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~  156 (380)
                      +.+....++.+|||+|||+|.++..++..+.+|+|+|+++.+++.|+++...     +++++++|+.+.
T Consensus        35 ~~l~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~-----~v~~~~~d~~~~   98 (250)
T 2p7i_A           35 RAFTPFFRPGNLLELGSFKGDFTSRLQEHFNDITCVEASEEAISHAQGRLKD-----GITYIHSRFEDA   98 (250)
T ss_dssp             HHHGGGCCSSCEEEESCTTSHHHHHHTTTCSCEEEEESCHHHHHHHHHHSCS-----CEEEEESCGGGC
T ss_pred             HHHHhhcCCCcEEEECCCCCHHHHHHHHhCCcEEEEeCCHHHHHHHHHhhhC-----CeEEEEccHHHc
Confidence            4444556788999999999999999999988999999999999999988643     489999998764

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43

Probab=98.26  E-value=1.6e-06  Score=78.34  Aligned_cols=60  Identities=15%  Similarity=0.061  Sum_probs=54.8

Q ss_pred             CCCCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHH
Q 046527           94 RPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDARE  155 (380)
Q Consensus        94 ~~g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e  155 (380)
                      .++.+|||+|||+|.++..+++.+.+|+++|+++.+++.+++++..+++  ++.++++|+.+
T Consensus        36 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~D~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~   95 (246)
T 1y8c_A           36 LVFDDYLDLACGTGNLTENLCPKFKNTWAVDLSQEMLSEAENKFRSQGL--KPRLACQDISN   95 (246)
T ss_dssp             CCTTEEEEETCTTSTTHHHHGGGSSEEEEECSCHHHHHHHHHHHHHTTC--CCEEECCCGGG
T ss_pred             CCCCeEEEeCCCCCHHHHHHHHCCCcEEEEECCHHHHHHHHHHHhhcCC--CeEEEeccccc
Confidence            3678999999999999999999999999999999999999999988876  48899999864

>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}

Probab=98.25  E-value=4.1e-07  Score=94.93  Aligned_cols=77  Identities=17%  Similarity=0.241  Sum_probs=57.6

Q ss_pred             eeecChHHHHHHHHHhccCCCCeEEEecCCcchhHHHHhhc-----------------CCEEEEEeCCHHHHHHHHHHHH
Q 046527           76 VYWNSRLEHEHLRIISQFRPGETICDMFAGIGPFAIPAAQK-----------------GCIVFANDLNPDSVHYLKINAK  138 (380)
Q Consensus        76 ff~n~rl~tE~~r~i~~i~~g~~VLDlfcGvG~fsl~aA~~-----------------g~~V~avDlnp~Aie~a~~Na~  138 (380)
                      .|+.|+...+.+..+....++ +|||.+||+|.|.+.++..                 ...++|+|+++.++..|+.|+.
T Consensus       226 ~fyTP~~Vv~lmv~ll~p~~~-~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~  304 (544)
T 3khk_A          226 QYYTPKSIVTLIVEMLEPYKG-RVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMV  304 (544)
T ss_dssp             TTCCCHHHHHHHHHHHCCCSE-EEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHH
T ss_pred             eEeCCHHHHHHHHHHHhcCCC-eEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHH
Confidence            566777665555333334445 9999999999999987642                 3489999999999999999999


Q ss_pred             HcCCCCcEEEEeccH
Q 046527          139 VNKVDNYVRAYNMDA  153 (380)
Q Consensus       139 lN~l~~ri~~~~~Da  153 (380)
                      ++++...+.+.++|.
T Consensus       305 l~gi~~~i~i~~gDt  319 (544)
T 3khk_A          305 IRGIDFNFGKKNADS  319 (544)
T ss_dssp             HTTCCCBCCSSSCCT
T ss_pred             HhCCCcccceeccch
Confidence            999875443355543

>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24

Probab=98.25  E-value=4.3e-08  Score=91.10  Aligned_cols=63  Identities=16%  Similarity=0.187  Sum_probs=54.8

Q ss_pred             hccCCCCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHH
Q 046527           91 SQFRPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREF  156 (380)
Q Consensus        91 ~~i~~g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~  156 (380)
                      ..+.++++|||+|||+|.++..++..+.+|+|+|+++.+++.|++|+.  . .++++++++|+.++
T Consensus        25 ~~~~~~~~VLDiG~G~G~~~~~l~~~~~~v~~id~~~~~~~~a~~~~~--~-~~~v~~~~~D~~~~   87 (245)
T 1yub_A           25 LNLKETDTVYEIGTGKGHLTTKLAKISKQVTSIELDSHLFNLSSEKLK--L-NTRVTLIHQDILQF   87 (245)
T ss_dssp             CCCCSSEEEEECSCCCSSCSHHHHHHSSEEEESSSSCSSSSSSSCTTT--T-CSEEEECCSCCTTT
T ss_pred             cCCCCCCEEEEEeCCCCHHHHHHHHhCCeEEEEECCHHHHHHHHHHhc--c-CCceEEEECChhhc
Confidence            345688899999999999999999999999999999999999998876  2 34699999998653

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}

Probab=98.24  E-value=1.8e-06  Score=78.56  Aligned_cols=56  Identities=18%  Similarity=0.293  Sum_probs=50.6

Q ss_pred             cCCCCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHH
Q 046527           93 FRPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAR  154 (380)
Q Consensus        93 i~~g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~  154 (380)
                      +.++.+|||+|||+|.++..+++.+++|+++|+++.+++.++++     .. +++++++|+.
T Consensus        46 ~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~-----~~-~~~~~~~d~~  101 (226)
T 3m33_A           46 LTPQTRVLEAGCGHGPDAARFGPQAARWAAYDFSPELLKLARAN-----AP-HADVYEWNGK  101 (226)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHH-----CT-TSEEEECCSC
T ss_pred             CCCCCeEEEeCCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHh-----CC-CceEEEcchh
Confidence            57889999999999999999999999999999999999999998     23 4889999875

>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*

Probab=98.23  E-value=4.2e-07  Score=89.98  Aligned_cols=69  Identities=9%  Similarity=0.109  Sum_probs=51.2

Q ss_pred             eeecChHHHHHHHHHhccCCCCeEEEecCCcchhHHHHhhc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEecc
Q 046527           76 VYWNSRLEHEHLRIISQFRPGETICDMFAGIGPFAIPAAQK---GCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMD  152 (380)
Q Consensus        76 ff~n~rl~tE~~r~i~~i~~g~~VLDlfcGvG~fsl~aA~~---g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~D  152 (380)
                      .|+.++...+.+.......++.+|||+|||+|.|++.++++   +.+|+|+|+++.+++.|          .++.++++|
T Consensus        20 ~~~TP~~l~~~~~~~~~~~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a----------~~~~~~~~D   89 (421)
T 2ih2_A           20 RVETPPEVVDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP----------PWAEGILAD   89 (421)
T ss_dssp             -CCCCHHHHHHHHHHCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC----------TTEEEEESC
T ss_pred             eEeCCHHHHHHHHHhhccCCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC----------CCCcEEeCC
Confidence            45566654444322222345679999999999999999974   46999999999999877          347888888


Q ss_pred             HH
Q 046527          153 AR  154 (380)
Q Consensus       153 a~  154 (380)
                      +.
T Consensus        90 ~~   91 (421)
T 2ih2_A           90 FL   91 (421)
T ss_dssp             GG
T ss_pred             hh
Confidence            75

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A

Probab=98.23  E-value=2.2e-06  Score=78.56  Aligned_cols=62  Identities=18%  Similarity=0.220  Sum_probs=53.7

Q ss_pred             ccCCCCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHH
Q 046527           92 QFRPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDARE  155 (380)
Q Consensus        92 ~i~~g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e  155 (380)
                      .+.++.+|||+|||+|.++..++..+.+|+++|+++.+++.+++++ .... .++.++.+|+.+
T Consensus        36 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~-~~~~-~~~~~~~~d~~~   97 (263)
T 2yqz_A           36 PKGEEPVFLELGVGTGRIALPLIARGYRYIALDADAAMLEVFRQKI-AGVD-RKVQVVQADARA   97 (263)
T ss_dssp             CSSSCCEEEEETCTTSTTHHHHHTTTCEEEEEESCHHHHHHHHHHT-TTSC-TTEEEEESCTTS
T ss_pred             CCCCCCEEEEeCCcCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHh-hccC-CceEEEEccccc
Confidence            4577899999999999999999999899999999999999999998 3333 359999998753

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}

Probab=98.23  E-value=2.8e-06  Score=77.89  Aligned_cols=57  Identities=23%  Similarity=0.208  Sum_probs=51.3

Q ss_pred             CCCeEEEecCCcchhHHHHhhcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHH
Q 046527           95 PGETICDMFAGIGPFAIPAAQKGC-IVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDARE  155 (380)
Q Consensus        95 ~g~~VLDlfcGvG~fsl~aA~~g~-~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e  155 (380)
                      ++.+|||+|||+|.++..+++.+. +|+++|+++.+++.+++++.    ..+++++++|+.+
T Consensus        44 ~~~~vLD~GcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~----~~~~~~~~~d~~~  101 (253)
T 3g5l_A           44 NQKTVLDLGCGFGWHCIYAAEHGAKKVLGIDLSERMLTEAKRKTT----SPVVCYEQKAIED  101 (253)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHCC----CTTEEEEECCGGG
T ss_pred             CCCEEEEECCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHhhc----cCCeEEEEcchhh
Confidence            788999999999999999999987 99999999999999998875    3458999999864

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*

Probab=98.21  E-value=3.8e-06  Score=78.77  Aligned_cols=65  Identities=12%  Similarity=0.046  Sum_probs=55.6

Q ss_pred             cCCCCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCC---CcEEEEeccHHHHH
Q 046527           93 FRPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKVD---NYVRAYNMDAREFI  157 (380)
Q Consensus        93 i~~g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~lN~l~---~ri~~~~~Da~e~l  157 (380)
                      ..++.+|||+|||+|.+++.++..+.+|+|+|+++.+++.|++++...+..   .++.+..+|+.+..
T Consensus        55 ~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~  122 (293)
T 3thr_A           55 QHGCHRVLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLD  122 (293)
T ss_dssp             HTTCCEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHH
T ss_pred             ccCCCEEEEecCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhhCc
Confidence            357889999999999999999999999999999999999999998655433   24788999987764

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}

Probab=98.21  E-value=1.7e-06  Score=80.21  Aligned_cols=61  Identities=18%  Similarity=0.200  Sum_probs=55.5

Q ss_pred             ccCCCCeEEEecCCcchhHHHHhhc-C--CEEEEEeCCHH------HHHHHHHHHHHcCCCCcEEEEecc
Q 046527           92 QFRPGETICDMFAGIGPFAIPAAQK-G--CIVFANDLNPD------SVHYLKINAKVNKVDNYVRAYNMD  152 (380)
Q Consensus        92 ~i~~g~~VLDlfcGvG~fsl~aA~~-g--~~V~avDlnp~------Aie~a~~Na~lN~l~~ri~~~~~D  152 (380)
                      .+.++.+|||+|||+|.++..++.. |  ++|+++|+++.      +++.|++++..+++.++++++++|
T Consensus        40 ~~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d  109 (275)
T 3bkx_A           40 QVKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNT  109 (275)
T ss_dssp             TCCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSC
T ss_pred             CCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECC
Confidence            4578999999999999999999987 4  79999999997      999999999999887779999988

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}

Probab=98.20  E-value=1.7e-06  Score=78.97  Aligned_cols=59  Identities=20%  Similarity=0.345  Sum_probs=52.5

Q ss_pred             hccCCCCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHHHH
Q 046527           91 SQFRPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFIR  158 (380)
Q Consensus        91 ~~i~~g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~l~  158 (380)
                      ..+.++.+|||+|||+|.++..+++.+++|+|+|+++.+++.++++         +.++.+|+.+++.
T Consensus        37 ~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~---------~~~~~~d~~~~~~   95 (240)
T 3dli_A           37 PYFKGCRRVLDIGCGRGEFLELCKEEGIESIGVDINEDMIKFCEGK---------FNVVKSDAIEYLK   95 (240)
T ss_dssp             GGTTTCSCEEEETCTTTHHHHHHHHHTCCEEEECSCHHHHHHHHTT---------SEEECSCHHHHHH
T ss_pred             hhhcCCCeEEEEeCCCCHHHHHHHhCCCcEEEEECCHHHHHHHHhh---------cceeeccHHHHhh
Confidence            3457889999999999999999999999999999999999998876         6789999988753

>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31

Probab=98.19  E-value=4.5e-06  Score=84.90  Aligned_cols=63  Identities=25%  Similarity=0.413  Sum_probs=54.6

Q ss_pred             ccCCCCeEEEecCCcchhHHHHhhc-CC-EEEEEeCCHHHHHHH-------HHHHHHcCCC-CcEEEEeccHH
Q 046527           92 QFRPGETICDMFAGIGPFAIPAAQK-GC-IVFANDLNPDSVHYL-------KINAKVNKVD-NYVRAYNMDAR  154 (380)
Q Consensus        92 ~i~~g~~VLDlfcGvG~fsl~aA~~-g~-~V~avDlnp~Aie~a-------~~Na~lN~l~-~ri~~~~~Da~  154 (380)
                      .+.++++|||+|||+|.+++.+|+. ++ +|+|+|+++.+++.|       ++|++.+|+. ++++++++|..
T Consensus       239 ~l~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~gD~~  311 (433)
T 1u2z_A          239 QLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSF  311 (433)
T ss_dssp             TCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCS
T ss_pred             CCCCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEEEcCcc
Confidence            4678999999999999999999985 54 899999999999999       9999999954 45999988643

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}

Probab=98.19  E-value=6.4e-06  Score=75.36  Aligned_cols=57  Identities=11%  Similarity=-0.028  Sum_probs=49.0

Q ss_pred             cCCCCeEEEecCCcchhHHHHhhc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHH
Q 046527           93 FRPGETICDMFAGIGPFAIPAAQK--GCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDARE  155 (380)
Q Consensus        93 i~~g~~VLDlfcGvG~fsl~aA~~--g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e  155 (380)
                      ..++.+|||+|||+|.++..++..  +.+|+++|+++.+++.++++     .. +++++++|+.+
T Consensus        31 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~-----~~-~~~~~~~d~~~   89 (259)
T 2p35_A           31 LERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADR-----LP-NTNFGKADLAT   89 (259)
T ss_dssp             CSCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHH-----ST-TSEEEECCTTT
T ss_pred             CCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHh-----CC-CcEEEECChhh
Confidence            457889999999999999999988  78999999999999999988     22 47888887653

>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*

Probab=98.18  E-value=2.3e-06  Score=72.66  Aligned_cols=53  Identities=26%  Similarity=0.247  Sum_probs=43.9

Q ss_pred             ccCCCCeEEEecCCcchhHHHHhhc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHH
Q 046527           92 QFRPGETICDMFAGIGPFAIPAAQK---GCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREF  156 (380)
Q Consensus        92 ~i~~g~~VLDlfcGvG~fsl~aA~~---g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~  156 (380)
                      .+.++.+|||+|||+|.++..+++.   +.+|+++|+++ +++.           .+++++++|+.+.
T Consensus        19 ~~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~~-----------~~~~~~~~d~~~~   74 (180)
T 1ej0_A           19 LFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDPI-----------VGVDFLQGDFRDE   74 (180)
T ss_dssp             CCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCCC-----------TTEEEEESCTTSH
T ss_pred             CCCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-cccc-----------CcEEEEEcccccc
Confidence            3678899999999999999999987   36999999999 6532           3488999998654

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}

Probab=98.17  E-value=2.8e-06  Score=77.01  Aligned_cols=61  Identities=11%  Similarity=0.024  Sum_probs=53.0

Q ss_pred             hccCCCCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHH
Q 046527           91 SQFRPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDARE  155 (380)
Q Consensus        91 ~~i~~g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e  155 (380)
                      ..+.++.+|||+|||+|.++..++..+.+|+++|+++.+++.++++.    ...+++++++|+.+
T Consensus        49 ~~~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~----~~~~~~~~~~d~~~  109 (242)
T 3l8d_A           49 QYVKKEAEVLDVGCGDGYGTYKLSRTGYKAVGVDISEVMIQKGKERG----EGPDLSFIKGDLSS  109 (242)
T ss_dssp             HHSCTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHTTT----CBTTEEEEECBTTB
T ss_pred             HHcCCCCeEEEEcCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHhhc----ccCCceEEEcchhc
Confidence            44678899999999999999999999999999999999999999874    22358999998764

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*

Probab=98.16  E-value=2.1e-06  Score=79.41  Aligned_cols=58  Identities=16%  Similarity=0.074  Sum_probs=51.3

Q ss_pred             ccCCCCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHH
Q 046527           92 QFRPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDARE  155 (380)
Q Consensus        92 ~i~~g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e  155 (380)
                      ...++.+|||+|||+|.++..+++.+.+|+|+|+++.+++.|++++.      +++++++|+.+
T Consensus        47 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~------~~~~~~~d~~~  104 (263)
T 3pfg_A           47 HSPKAASLLDVACGTGMHLRHLADSFGTVEGLELSADMLAIARRRNP------DAVLHHGDMRD  104 (263)
T ss_dssp             HCTTCCEEEEETCTTSHHHHHHTTTSSEEEEEESCHHHHHHHHHHCT------TSEEEECCTTT
T ss_pred             hCCCCCcEEEeCCcCCHHHHHHHHcCCeEEEEECCHHHHHHHHhhCC------CCEEEECChHH
Confidence            34567899999999999999999999999999999999999998853      48899998864

>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*

Probab=98.15  E-value=5.3e-06  Score=77.55  Aligned_cols=60  Identities=18%  Similarity=0.169  Sum_probs=49.6

Q ss_pred             cCCCCeEEEecCCcchhHHHHhhc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHH
Q 046527           93 FRPGETICDMFAGIGPFAIPAAQK---GCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDARE  155 (380)
Q Consensus        93 i~~g~~VLDlfcGvG~fsl~aA~~---g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e  155 (380)
                      +.+|++|||+|||+|.++..+|..   ..+|+|+|+++.+++.+.+.++..  . ++.++++|++.
T Consensus        74 l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r--~-nv~~i~~Da~~  136 (232)
T 3id6_C           74 IRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRR--P-NIFPLLADARF  136 (232)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHC--T-TEEEEECCTTC
T ss_pred             CCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc--C-CeEEEEccccc
Confidence            678999999999999999999975   249999999999987766655543  3 48999999863

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}

Probab=98.13  E-value=3e-06  Score=75.80  Aligned_cols=58  Identities=10%  Similarity=0.008  Sum_probs=50.9

Q ss_pred             cCCCCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHH
Q 046527           93 FRPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDARE  155 (380)
Q Consensus        93 i~~g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e  155 (380)
                      ..++.+|||+|||+|.++..++..+.+|+++|+++.+++.+++++.     .+++++++|+.+
T Consensus        43 ~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~-----~~~~~~~~d~~~  100 (220)
T 3hnr_A           43 NKSFGNVLEFGVGTGNLTNKLLLAGRTVYGIEPSREMRMIAKEKLP-----KEFSITEGDFLS  100 (220)
T ss_dssp             HTCCSEEEEECCTTSHHHHHHHHTTCEEEEECSCHHHHHHHHHHSC-----TTCCEESCCSSS
T ss_pred             ccCCCeEEEeCCCCCHHHHHHHhCCCeEEEEeCCHHHHHHHHHhCC-----CceEEEeCChhh
Confidence            3578899999999999999999999999999999999999998865     347888888753

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42

Probab=98.12  E-value=2.7e-06  Score=77.76  Aligned_cols=60  Identities=15%  Similarity=-0.026  Sum_probs=52.1

Q ss_pred             CCCeEEEecCCcchhHHHHhhcC-CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHH
Q 046527           95 PGETICDMFAGIGPFAIPAAQKG-CIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDARE  155 (380)
Q Consensus        95 ~g~~VLDlfcGvG~fsl~aA~~g-~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e  155 (380)
                      ++.+|||+|||+|.++..+++.+ .+|+++|+++.+++.|++++..++. .++.++++|+.+
T Consensus        79 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~~d~~~  139 (241)
T 2ex4_A           79 GTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGK-RVRNYFCCGLQD  139 (241)
T ss_dssp             CCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGGG-GEEEEEECCGGG
T ss_pred             CCCEEEEECCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHhhhcCC-ceEEEEEcChhh
Confidence            58899999999999999988875 4999999999999999999877653 358899998754

>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23

Probab=98.11  E-value=9.1e-06  Score=78.27  Aligned_cols=77  Identities=23%  Similarity=0.251  Sum_probs=61.3

Q ss_pred             cChHHHHHHHHHhccCCCCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHHHH
Q 046527           79 NSRLEHEHLRIISQFRPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFIR  158 (380)
Q Consensus        79 n~rl~tE~~r~i~~i~~g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~l~  158 (380)
                      .+-+..|.+..+ .+.+|.+++|++||.|..+..+++++.+|+|+|.+|.|++.+++ ++.    +++++++++..++-.
T Consensus         7 ~pVLl~e~le~L-~~~~gg~~VD~T~G~GGHS~~il~~~g~VigiD~Dp~Ai~~A~~-L~~----~rv~lv~~~f~~l~~   80 (285)
T 1wg8_A            7 VPVLYQEALDLL-AVRPGGVYVDATLGGAGHARGILERGGRVIGLDQDPEAVARAKG-LHL----PGLTVVQGNFRHLKR   80 (285)
T ss_dssp             CCTTHHHHHHHH-TCCTTCEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHH-TCC----TTEEEEESCGGGHHH
T ss_pred             hhHHHHHHHHhh-CCCCCCEEEEeCCCCcHHHHHHHHCCCEEEEEeCCHHHHHHHHh-hcc----CCEEEEECCcchHHH
Confidence            344444554443 46788999999999999999999987899999999999999998 532    479999999987754


Q ss_pred             HHh
Q 046527          159 QLM  161 (380)
Q Consensus       159 ~l~  161 (380)
                      .+.
T Consensus        81 ~L~   83 (285)
T 1wg8_A           81 HLA   83 (285)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            443

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=98.10  E-value=9e-06  Score=77.89  Aligned_cols=47  Identities=28%  Similarity=0.309  Sum_probs=44.6

Q ss_pred             CCCCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHc
Q 046527           94 RPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVN  140 (380)
Q Consensus        94 ~~g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~lN  140 (380)
                      .+|++|||+|||+|.+++.+++.|.+++|+|+++.+++.|++|+...
T Consensus       234 ~~~~~vlD~f~GsGt~~~~a~~~g~~~~g~e~~~~~~~~a~~r~~~~  280 (297)
T 2zig_A          234 FVGDVVLDPFAGTGTTLIAAARWGRRALGVELVPRYAQLAKERFARE  280 (297)
T ss_dssp             CTTCEEEETTCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHH
T ss_pred             CCCCEEEECCCCCCHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHh
Confidence            57899999999999999999999999999999999999999999764

>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*

Probab=98.09  E-value=3.4e-06  Score=80.76  Aligned_cols=61  Identities=20%  Similarity=0.267  Sum_probs=52.3

Q ss_pred             hccCCCCeEEEecCCcchhHHHHhhcC--CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccH
Q 046527           91 SQFRPGETICDMFAGIGPFAIPAAQKG--CIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDA  153 (380)
Q Consensus        91 ~~i~~g~~VLDlfcGvG~fsl~aA~~g--~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da  153 (380)
                      ..+.+..+|||+|||.|+|+++++...  ++|+|+|+|+.+++.+++|+..||+.  .++...|.
T Consensus       128 ~~i~~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~g~~--~~~~v~D~  190 (281)
T 3lcv_B          128 RHLPRPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLNVP--HRTNVADL  190 (281)
T ss_dssp             GGSCCCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTTCC--EEEEECCT
T ss_pred             hccCCCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcCCC--ceEEEeee
Confidence            345667899999999999999998763  49999999999999999999999987  46666665

>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59

Probab=98.09  E-value=3.6e-06  Score=81.04  Aligned_cols=70  Identities=17%  Similarity=0.254  Sum_probs=59.4

Q ss_pred             HHHhccCCCCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHHHHHHh
Q 046527           88 RIISQFRPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFIRQLM  161 (380)
Q Consensus        88 r~i~~i~~g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~l~~l~  161 (380)
                      .++..+. +..+||+|+|+|.+++.+.+.+.+++.+|+++.+++.+++|++.   .++++++++|+.+.+..+.
T Consensus        85 ~~l~~~n-~~~~LDlfaGSGaLgiEaLS~~d~~vfvE~~~~a~~~L~~Nl~~---~~~~~V~~~D~~~~L~~l~  154 (283)
T 2oo3_A           85 SVIKQIN-LNSTLSYYPGSPYFAINQLRSQDRLYLCELHPTEYNFLLKLPHF---NKKVYVNHTDGVSKLNALL  154 (283)
T ss_dssp             HHHHHHS-SSSSCCEEECHHHHHHHHSCTTSEEEEECCSHHHHHHHTTSCCT---TSCEEEECSCHHHHHHHHC
T ss_pred             HHHHHhc-CCCceeEeCCcHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHhCc---CCcEEEEeCcHHHHHHHhc
Confidence            4444443 56789999999999999999778999999999999999999864   4569999999999987763

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}

Probab=98.08  E-value=8.4e-06  Score=72.52  Aligned_cols=57  Identities=16%  Similarity=0.050  Sum_probs=50.1

Q ss_pred             cCCCCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHH
Q 046527           93 FRPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREF  156 (380)
Q Consensus        93 i~~g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~  156 (380)
                      ..++.+|||+|||+|.++..++..+.+|+++|+++.+++.++++       ..+.+..+|+.++
T Consensus        50 ~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~  106 (227)
T 3e8s_A           50 GRQPERVLDLGCGEGWLLRALADRGIEAVGVDGDRTLVDAARAA-------GAGEVHLASYAQL  106 (227)
T ss_dssp             HTCCSEEEEETCTTCHHHHHHHTTTCEEEEEESCHHHHHHHHHT-------CSSCEEECCHHHH
T ss_pred             cCCCCEEEEeCCCCCHHHHHHHHCCCEEEEEcCCHHHHHHHHHh-------cccccchhhHHhh
Confidence            34678999999999999999999999999999999999999987       2367888998765

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}

Probab=98.06  E-value=5.8e-06  Score=74.78  Aligned_cols=59  Identities=20%  Similarity=0.164  Sum_probs=51.5

Q ss_pred             cCCCCeEEEecCCcchhHHHHhhcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHH
Q 046527           93 FRPGETICDMFAGIGPFAIPAAQKGC-IVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDARE  155 (380)
Q Consensus        93 i~~g~~VLDlfcGvG~fsl~aA~~g~-~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e  155 (380)
                      ..++.+|||+|||+|.++..+++.+. +|+++|+++.+++.++++...    .+++++++|+.+
T Consensus        41 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~----~~~~~~~~d~~~  100 (243)
T 3bkw_A           41 EVGGLRIVDLGCGFGWFCRWAHEHGASYVLGLDLSEKMLARARAAGPD----TGITYERADLDK  100 (243)
T ss_dssp             CCTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHTSCS----SSEEEEECCGGG
T ss_pred             ccCCCEEEEEcCcCCHHHHHHHHCCCCeEEEEcCCHHHHHHHHHhccc----CCceEEEcChhh
Confidence            34788999999999999999999988 999999999999999987643    248899999865

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=98.06  E-value=4.7e-06  Score=78.39  Aligned_cols=49  Identities=24%  Similarity=0.350  Sum_probs=44.5

Q ss_pred             CCCCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCC
Q 046527           94 RPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKV  142 (380)
Q Consensus        94 ~~g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~lN~l  142 (380)
                      .+|++|||.|||+|..++.+++.|.+++|+|+++.+++.+++|++.+++
T Consensus       211 ~~~~~vlD~f~GsGtt~~~a~~~gr~~ig~e~~~~~~~~~~~r~~~~~~  259 (260)
T 1g60_A          211 NPNDLVLDCFMGSGTTAIVAKKLGRNFIGCDMNAEYVNQANFVLNQLEI  259 (260)
T ss_dssp             CTTCEEEESSCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHC---
T ss_pred             CCCCEEEECCCCCCHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhccC
Confidence            6899999999999999999999999999999999999999999988765

>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*

Probab=98.05  E-value=8.1e-06  Score=77.26  Aligned_cols=58  Identities=16%  Similarity=0.152  Sum_probs=50.9

Q ss_pred             CCCCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHH
Q 046527           94 RPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAR  154 (380)
Q Consensus        94 ~~g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~  154 (380)
                      .+..+|||+|||.|+|+++++ .+.+++|+|+++.+++.+++++..++..  ..+..+|..
T Consensus       104 ~~p~~VLDlGCG~gpLal~~~-~~~~y~a~DId~~~i~~ar~~~~~~g~~--~~~~v~D~~  161 (253)
T 3frh_A          104 ETPRRVLDIACGLNPLALYER-GIASVWGCDIHQGLGDVITPFAREKDWD--FTFALQDVL  161 (253)
T ss_dssp             CCCSEEEEETCTTTHHHHHHT-TCSEEEEEESBHHHHHHHHHHHHHTTCE--EEEEECCTT
T ss_pred             CCCCeEEEecCCccHHHHHhc-cCCeEEEEeCCHHHHHHHHHHHHhcCCC--ceEEEeecc
Confidence            567899999999999999988 5569999999999999999999999854  577777764

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}

Probab=98.04  E-value=4.4e-06  Score=90.86  Aligned_cols=77  Identities=14%  Similarity=0.179  Sum_probs=60.1

Q ss_pred             ecChHHHHHHHHH-h--ccCCCCeEEEecCCcchhHHHHhhcC---CEEEEEeCCHHHHHHHHHHHHH------cCCCCc
Q 046527           78 WNSRLEHEHLRII-S--QFRPGETICDMFAGIGPFAIPAAQKG---CIVFANDLNPDSVHYLKINAKV------NKVDNY  145 (380)
Q Consensus        78 ~n~rl~tE~~r~i-~--~i~~g~~VLDlfcGvG~fsl~aA~~g---~~V~avDlnp~Aie~a~~Na~l------N~l~~r  145 (380)
                      +.+.+...++..+ .  ...++.+|||+|||+|.+++.+++.+   .+|+|+|+++.+++.|++++..      +++. +
T Consensus       701 FsPPL~eqRle~LLelL~~~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~-n  779 (950)
T 3htx_A          701 FKPPLSKQRVEYALKHIRESSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVK-S  779 (950)
T ss_dssp             SSSCHHHHHHHHHHHHHHHSCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCS-E
T ss_pred             CCchHHHHHHHHHHHHhcccCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCC-c
Confidence            3455544444322 2  23478999999999999999999987   6999999999999999997653      2555 5


Q ss_pred             EEEEeccHHH
Q 046527          146 VRAYNMDARE  155 (380)
Q Consensus       146 i~~~~~Da~e  155 (380)
                      ++++++|+.+
T Consensus       780 VefiqGDa~d  789 (950)
T 3htx_A          780 ATLYDGSILE  789 (950)
T ss_dssp             EEEEESCTTS
T ss_pred             eEEEECchHh
Confidence            9999999875

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}

Probab=98.04  E-value=3.2e-06  Score=78.54  Aligned_cols=57  Identities=21%  Similarity=0.299  Sum_probs=49.8

Q ss_pred             ccCCCCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHH
Q 046527           92 QFRPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDARE  155 (380)
Q Consensus        92 ~i~~g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e  155 (380)
                      ...++.+|||+|||+|.++..++..+++|+|+|+++.+++.++++.       +++++++|+.+
T Consensus        31 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~-------~~~~~~~d~~~   87 (261)
T 3ege_A           31 NLPKGSVIADIGAGTGGYSVALANQGLFVYAVEPSIVMRQQAVVHP-------QVEWFTGYAEN   87 (261)
T ss_dssp             CCCTTCEEEEETCTTSHHHHHHHTTTCEEEEECSCHHHHHSSCCCT-------TEEEECCCTTS
T ss_pred             CCCCCCEEEEEcCcccHHHHHHHhCCCEEEEEeCCHHHHHHHHhcc-------CCEEEECchhh
Confidence            3478899999999999999999998899999999999999877654       48999998854

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42

Probab=98.03  E-value=5e-06  Score=75.89  Aligned_cols=59  Identities=12%  Similarity=-0.113  Sum_probs=51.3

Q ss_pred             CCCCeEEEecCCcchhHHHHhhcC-CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHH
Q 046527           94 RPGETICDMFAGIGPFAIPAAQKG-CIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDARE  155 (380)
Q Consensus        94 ~~g~~VLDlfcGvG~fsl~aA~~g-~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e  155 (380)
                      .++.+|||+|||+|.++..++..+ .+|+++|+++.+++.+++++..+   .+++++++|+.+
T Consensus        92 ~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~---~~~~~~~~d~~~  151 (254)
T 1xtp_A           92 HGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGM---PVGKFILASMET  151 (254)
T ss_dssp             CCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTTS---SEEEEEESCGGG
T ss_pred             cCCCEEEEECCCcCHHHHHHHHhhcCEEEEEeCCHHHHHHHHHHhccC---CceEEEEccHHH
Confidence            467899999999999999998875 48999999999999999997654   458999999864

>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0

Probab=98.01  E-value=5.3e-06  Score=74.46  Aligned_cols=64  Identities=16%  Similarity=0.167  Sum_probs=49.1

Q ss_pred             ChHHHHHHHHHh---ccCCCCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHH
Q 046527           80 SRLEHEHLRIIS---QFRPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDARE  155 (380)
Q Consensus        80 ~rl~tE~~r~i~---~i~~g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e  155 (380)
                      +|.......+..   .+.++.+|||+|||+|.++..+++.+++|+|+|+++..           .+. +++++++|+.+
T Consensus         7 ~Ra~~KL~ei~~~~~~~~~g~~VLDlG~G~G~~s~~la~~~~~V~gvD~~~~~-----------~~~-~v~~~~~D~~~   73 (191)
T 3dou_A            7 SRAAFKLEFLLDRYRVVRKGDAVIEIGSSPGGWTQVLNSLARKIISIDLQEME-----------EIA-GVRFIRCDIFK   73 (191)
T ss_dssp             SHHHHHHHHHHHHHCCSCTTCEEEEESCTTCHHHHHHTTTCSEEEEEESSCCC-----------CCT-TCEEEECCTTS
T ss_pred             CcHHHHHHHHHHHcCCCCCCCEEEEEeecCCHHHHHHHHcCCcEEEEeccccc-----------cCC-CeEEEEccccC
Confidence            444444444333   35789999999999999999999998899999999851           234 48999999865

>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*

Probab=97.99  E-value=1.1e-05  Score=78.49  Aligned_cols=62  Identities=11%  Similarity=0.014  Sum_probs=56.1

Q ss_pred             cCCCCeEEEecCCcchhHHHHhhcC--CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHH
Q 046527           93 FRPGETICDMFAGIGPFAIPAAQKG--CIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDARE  155 (380)
Q Consensus        93 i~~g~~VLDlfcGvG~fsl~aA~~g--~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e  155 (380)
                      +.++.+|||+|||+|.+++.+++..  .+++++|+ +.+++.+++++..+++.++++++.+|+.+
T Consensus       180 ~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  243 (374)
T 1qzz_A          180 WSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFK  243 (374)
T ss_dssp             CTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTS
T ss_pred             CCCCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeC-HHHHHHHHHHHHhcCCCCceEEEeCCCCC
Confidence            4567899999999999999999874  59999999 99999999999999998789999999864

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=97.99  E-value=0.00016  Score=63.31  Aligned_cols=53  Identities=25%  Similarity=0.236  Sum_probs=42.4

Q ss_pred             hccCCCCeEEEecCCcchhHHHHhhc-C----------CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEE-eccHHH
Q 046527           91 SQFRPGETICDMFAGIGPFAIPAAQK-G----------CIVFANDLNPDSVHYLKINAKVNKVDNYVRAY-NMDARE  155 (380)
Q Consensus        91 ~~i~~g~~VLDlfcGvG~fsl~aA~~-g----------~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~-~~Da~e  155 (380)
                      ..+.++.+|||+|||+|.+++.+++. +          .+|+++|+++.+           .+. +++++ ++|+.+
T Consensus        18 ~~~~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~-----------~~~-~~~~~~~~d~~~   82 (196)
T 2nyu_A           18 QILRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF-----------PLE-GATFLCPADVTD   82 (196)
T ss_dssp             CCCCTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC-----------CCT-TCEEECSCCTTS
T ss_pred             CCCCCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc-----------cCC-CCeEEEeccCCC
Confidence            34678999999999999999999987 3          789999999831           233 37888 888654

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}

Probab=97.98  E-value=9.4e-06  Score=75.85  Aligned_cols=58  Identities=28%  Similarity=0.308  Sum_probs=50.6

Q ss_pred             ccCCCCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHH
Q 046527           92 QFRPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDARE  155 (380)
Q Consensus        92 ~i~~g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e  155 (380)
                      ...++.+|||+|||+|.++..++..+.+|+|+|+++.+++.++++.     . ++.++.+|+.+
T Consensus        54 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~-----~-~~~~~~~d~~~  111 (279)
T 3ccf_A           54 NPQPGEFILDLGCGTGQLTEKIAQSGAEVLGTDNAATMIEKARQNY-----P-HLHFDVADARN  111 (279)
T ss_dssp             CCCTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHC-----T-TSCEEECCTTT
T ss_pred             CCCCCCEEEEecCCCCHHHHHHHhCCCeEEEEECCHHHHHHHHhhC-----C-CCEEEECChhh
Confidence            3567889999999999999999998889999999999999999875     2 37788888764

>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A

Probab=97.98  E-value=1.6e-05  Score=75.15  Aligned_cols=63  Identities=2%  Similarity=-0.296  Sum_probs=50.4

Q ss_pred             CCCCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHHHHHH--cCC-CCcEEEEeccHHHH
Q 046527           94 RPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKV--NKV-DNYVRAYNMDAREF  156 (380)
Q Consensus        94 ~~g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~l--N~l-~~ri~~~~~Da~e~  156 (380)
                      ..+.+|||+|||+|.++..+++.+.+|+++|+++.+++.|++++..  +++ ..+++++.+|+.++
T Consensus        71 ~~~~~VL~iG~G~G~~~~~ll~~~~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~  136 (262)
T 2cmg_A           71 KELKEVLIVDGFDLELAHQLFKYDTHIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLD  136 (262)
T ss_dssp             SCCCEEEEESSCCHHHHHHHTTSSCEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSC
T ss_pred             CCCCEEEEEeCCcCHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHH
Confidence            4568999999999999998887767999999999999999987532  122 24688888887543

>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*

Probab=97.97  E-value=5.4e-06  Score=87.99  Aligned_cols=61  Identities=25%  Similarity=0.328  Sum_probs=50.4

Q ss_pred             CCCeEEEecCCcchh---HHHHhhcCC---EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHH
Q 046527           95 PGETICDMFAGIGPF---AIPAAQKGC---IVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREF  156 (380)
Q Consensus        95 ~g~~VLDlfcGvG~f---sl~aA~~g~---~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~  156 (380)
                      .+.+|+|+|||+|++   ++.|+++++   +|+|||.||.|. .+++.++.|+++++|+++++|++++
T Consensus       357 ~~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp~A~-~a~~~v~~N~~~dkVtVI~gd~eev  423 (637)
T 4gqb_A          357 NVQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNPNAV-VTLENWQFEEWGSQVTVVSSDMREW  423 (637)
T ss_dssp             CEEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCHHHH-HHHHHHHHHTTGGGEEEEESCTTTC
T ss_pred             CCcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCHHHH-HHHHHHHhccCCCeEEEEeCcceec
Confidence            345899999999999   555555433   799999999654 6788999999999999999999875

>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}

Probab=97.96  E-value=3.8e-06  Score=79.21  Aligned_cols=57  Identities=16%  Similarity=-0.044  Sum_probs=48.1

Q ss_pred             ccCCCCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHH
Q 046527           92 QFRPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDARE  155 (380)
Q Consensus        92 ~i~~g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e  155 (380)
                      ....+.+|||+|||+|.++..++..+.+|+|+|+|+.+++.|+++       .+++++++|+.+
T Consensus        36 ~~~~~~~vLDvGcGtG~~~~~l~~~~~~v~gvD~s~~ml~~a~~~-------~~v~~~~~~~e~   92 (257)
T 4hg2_A           36 VAPARGDALDCGCGSGQASLGLAEFFERVHAVDPGEAQIRQALRH-------PRVTYAVAPAED   92 (257)
T ss_dssp             HSSCSSEEEEESCTTTTTHHHHHTTCSEEEEEESCHHHHHTCCCC-------TTEEEEECCTTC
T ss_pred             hcCCCCCEEEEcCCCCHHHHHHHHhCCEEEEEeCcHHhhhhhhhc-------CCceeehhhhhh
Confidence            345567999999999999999999999999999999999877532       248899998754

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A

Probab=97.96  E-value=1.3e-05  Score=79.34  Aligned_cols=63  Identities=16%  Similarity=0.083  Sum_probs=54.0

Q ss_pred             cCCCCeEEEecCCcchhHHHHhhc---CCEEEEEeCCHHHHHHHHHHHHHc-----C-CC-CcEEEEeccHHH
Q 046527           93 FRPGETICDMFAGIGPFAIPAAQK---GCIVFANDLNPDSVHYLKINAKVN-----K-VD-NYVRAYNMDARE  155 (380)
Q Consensus        93 i~~g~~VLDlfcGvG~fsl~aA~~---g~~V~avDlnp~Aie~a~~Na~lN-----~-l~-~ri~~~~~Da~e  155 (380)
                      ..++.+|||+|||+|.+++.+++.   +.+|+++|+++.+++.|++|++.+     | +. .+++++++|+.+
T Consensus        81 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~  153 (383)
T 4fsd_A           81 SLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIEN  153 (383)
T ss_dssp             GGTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTC
T ss_pred             CCCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHH
Confidence            457899999999999999999875   459999999999999999998876     3 32 459999999865

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*

Probab=97.96  E-value=1e-05  Score=78.75  Aligned_cols=62  Identities=18%  Similarity=0.230  Sum_probs=56.7

Q ss_pred             cCCCCeEEEecCCcchhHHHHhhc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHH
Q 046527           93 FRPGETICDMFAGIGPFAIPAAQK--GCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDARE  155 (380)
Q Consensus        93 i~~g~~VLDlfcGvG~fsl~aA~~--g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e  155 (380)
                      +.++.+|||+|||+|.++..+++.  +.+|+++|+ |.+++.++++++.+++.++++++.+|+.+
T Consensus       188 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  251 (359)
T 1x19_A          188 LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYK  251 (359)
T ss_dssp             CTTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCTTTEEEEECCTTT
T ss_pred             CCCCCEEEEECCcccHHHHHHHHHCCCCeEEEEec-HHHHHHHHHHHHhcCCCCCEEEEeCcccc
Confidence            467789999999999999999987  459999999 99999999999999998889999999865

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}

Probab=97.94  E-value=1e-05  Score=72.92  Aligned_cols=57  Identities=12%  Similarity=0.043  Sum_probs=50.0

Q ss_pred             cCCCCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHH
Q 046527           93 FRPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDARE  155 (380)
Q Consensus        93 i~~g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e  155 (380)
                      ..++.+|||+|||+|.++..+++.+.+|+++|+++.+++.++++.     . +++++++|+.+
T Consensus        38 ~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~~~-----~-~~~~~~~d~~~   94 (239)
T 3bxo_A           38 TPEASSLLDVACGTGTHLEHFTKEFGDTAGLELSEDMLTHARKRL-----P-DATLHQGDMRD   94 (239)
T ss_dssp             CTTCCEEEEETCTTSHHHHHHHHHHSEEEEEESCHHHHHHHHHHC-----T-TCEEEECCTTT
T ss_pred             cCCCCeEEEecccCCHHHHHHHHhCCcEEEEeCCHHHHHHHHHhC-----C-CCEEEECCHHH
Confidence            467889999999999999999998889999999999999999874     2 37888888764

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}

Probab=97.91  E-value=1.2e-05  Score=76.76  Aligned_cols=61  Identities=25%  Similarity=0.243  Sum_probs=56.0

Q ss_pred             CCCCeEEEecCCcchhHHHHhhc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHH
Q 046527           94 RPGETICDMFAGIGPFAIPAAQK--GCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDARE  155 (380)
Q Consensus        94 ~~g~~VLDlfcGvG~fsl~aA~~--g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e  155 (380)
                      .++.+|||+|||+|.++..+++.  +.+++++|++ .+++.+++++..+++.+++++..+|+.+
T Consensus       164 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~~~~~~~~~~~v~~~~~d~~~  226 (335)
T 2r3s_A          164 IEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWA-SVLEVAKENARIQGVASRYHTIAGSAFE  226 (335)
T ss_dssp             CCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECH-HHHHHHHHHHHHHTCGGGEEEEESCTTT
T ss_pred             CCCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecH-HHHHHHHHHHHhcCCCcceEEEeccccc
Confidence            67789999999999999999987  5699999999 9999999999999998889999999864

>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*

Probab=97.91  E-value=3.2e-05  Score=74.40  Aligned_cols=60  Identities=8%  Similarity=-0.105  Sum_probs=53.7

Q ss_pred             CCCCeEEEecCCcchhHHHHhhc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHH
Q 046527           94 RPGETICDMFAGIGPFAIPAAQK--GCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAR  154 (380)
Q Consensus        94 ~~g~~VLDlfcGvG~fsl~aA~~--g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~  154 (380)
                      .++.+|||+|||+|.++..+++.  +.+++++|+ |.+++.+++++...++.+++++..+|+.
T Consensus       168 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~  229 (332)
T 3i53_A          168 AALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDL-QGPASAAHRRFLDTGLSGRAQVVVGSFF  229 (332)
T ss_dssp             GGGSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTT
T ss_pred             CCCCEEEEeCCChhHHHHHHHHHCCCCeEEEecC-HHHHHHHHHhhhhcCcCcCeEEecCCCC
Confidence            34679999999999999999885  358999999 9999999999999999888999998874

>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*

Probab=97.91  E-value=1.9e-05  Score=75.24  Aligned_cols=63  Identities=14%  Similarity=-0.014  Sum_probs=51.8

Q ss_pred             CCCCeEEEecCCcchhHHHHhhc-CCEEEEEeCCHHHHHHHHHHHHHcC------CCCcEEEEeccHHHH
Q 046527           94 RPGETICDMFAGIGPFAIPAAQK-GCIVFANDLNPDSVHYLKINAKVNK------VDNYVRAYNMDAREF  156 (380)
Q Consensus        94 ~~g~~VLDlfcGvG~fsl~aA~~-g~~V~avDlnp~Aie~a~~Na~lN~------l~~ri~~~~~Da~e~  156 (380)
                      .++.+|||+|||+|.++..+++. +.+|+++|+++.+++.++++...++      ...+++++++|+.+.
T Consensus        33 ~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~  102 (313)
T 3bgv_A           33 KRDITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKE  102 (313)
T ss_dssp             --CCEEEEETCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTS
T ss_pred             CCCCEEEEECCCCcHHHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEeccccc
Confidence            47889999999999999999876 4599999999999999999987652      223589999998753

>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*

Probab=97.91  E-value=3.8e-06  Score=77.78  Aligned_cols=57  Identities=12%  Similarity=-0.002  Sum_probs=48.2

Q ss_pred             CCCCeEEEecCCcchhHHHHhhc------CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHH
Q 046527           94 RPGETICDMFAGIGPFAIPAAQK------GCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREF  156 (380)
Q Consensus        94 ~~g~~VLDlfcGvG~fsl~aA~~------g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~  156 (380)
                      .++.+|||+|||+|..++.+|+.      +++|+++|+++.+++.|+      ++.++++++++|+.+.
T Consensus        80 ~~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~------~~~~~v~~~~gD~~~~  142 (236)
T 2bm8_A           80 LRPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPA------SDMENITLHQGDCSDL  142 (236)
T ss_dssp             HCCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCG------GGCTTEEEEECCSSCS
T ss_pred             cCCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHh------ccCCceEEEECcchhH
Confidence            45689999999999999999986      579999999999999887      2335699999998653

>4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A*

Probab=97.90  E-value=0.00015  Score=71.99  Aligned_cols=70  Identities=27%  Similarity=0.419  Sum_probs=60.4

Q ss_pred             HHhccCCCCeEEEecCCcchhHHHHhhcCC--EEEEEeCCHHHHHHHHHHHHHcCCC-----CcEEEEeccHHHHHH
Q 046527           89 IISQFRPGETICDMFAGIGPFAIPAAQKGC--IVFANDLNPDSVHYLKINAKVNKVD-----NYVRAYNMDAREFIR  158 (380)
Q Consensus        89 ~i~~i~~g~~VLDlfcGvG~fsl~aA~~g~--~V~avDlnp~Aie~a~~Na~lN~l~-----~ri~~~~~Da~e~l~  158 (380)
                      .+....+|++|||+|||-|.=++++|..+.  .|+|+|+++.-++.+++|++..++.     +.+.+.+.|++.+-.
T Consensus       142 ~~L~~~pg~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~~~  218 (359)
T 4fzv_A          142 LALGLQPGDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGE  218 (359)
T ss_dssp             HHHCCCTTEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGGGHHH
T ss_pred             HHhCCCCCCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchhhcch
Confidence            345688999999999999999999998765  7999999999999999999988764     358899999987643

>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}

Probab=97.89  E-value=5.6e-06  Score=76.85  Aligned_cols=43  Identities=23%  Similarity=0.331  Sum_probs=38.9

Q ss_pred             CCCCeEEEecCCcchhHHHHhhcCC-EEEEEeCCHHHHHHHHHH
Q 046527           94 RPGETICDMFAGIGPFAIPAAQKGC-IVFANDLNPDSVHYLKIN  136 (380)
Q Consensus        94 ~~g~~VLDlfcGvG~fsl~aA~~g~-~V~avDlnp~Aie~a~~N  136 (380)
                      .++.+|||+|||+|.++..+++.|+ +|+|+|+++.++++++++
T Consensus        36 ~~g~~VLDiGcGtG~~t~~la~~g~~~V~gvDis~~ml~~a~~~   79 (232)
T 3opn_A           36 INGKTCLDIGSSTGGFTDVMLQNGAKLVYALDVGTNQLAWKIRS   79 (232)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSCCCCCHHHHT
T ss_pred             CCCCEEEEEccCCCHHHHHHHhcCCCEEEEEcCCHHHHHHHHHh
Confidence            3577999999999999999999985 999999999999997765

>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*

Probab=97.88  E-value=3.8e-06  Score=77.02  Aligned_cols=48  Identities=17%  Similarity=0.183  Sum_probs=43.3

Q ss_pred             CCCCeEEEecCCcchhHHHHhhcCC-EEEEEeCCHHHHHHHHHHHHHcC
Q 046527           94 RPGETICDMFAGIGPFAIPAAQKGC-IVFANDLNPDSVHYLKINAKVNK  141 (380)
Q Consensus        94 ~~g~~VLDlfcGvG~fsl~aA~~g~-~V~avDlnp~Aie~a~~Na~lN~  141 (380)
                      .++.+|||+|||+|.+++.++..+. +|+++|+++.+++.+++++..++
T Consensus        55 ~~~~~vLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~  103 (265)
T 2i62_A           55 VKGELLIDIGSGPTIYQLLSACESFTEIIVSDYTDQNLWELQKWLKKEP  103 (265)
T ss_dssp             CCEEEEEEESCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHTTCT
T ss_pred             cCCCEEEEECCCccHHHHHHhhcccCeEEEecCCHHHHHHHHHHHhcCC
Confidence            5678999999999999999998887 99999999999999999986543

>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*

Probab=97.88  E-value=1.7e-05  Score=76.94  Aligned_cols=62  Identities=18%  Similarity=0.173  Sum_probs=55.7

Q ss_pred             cCCCCeEEEecCCcchhHHHHhhcC--CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHH
Q 046527           93 FRPGETICDMFAGIGPFAIPAAQKG--CIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDARE  155 (380)
Q Consensus        93 i~~g~~VLDlfcGvG~fsl~aA~~g--~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e  155 (380)
                      +.++.+|||+|||+|.++..+++.+  .+++++|+ +.+++.+++|+..+++.++++++.+|+.+
T Consensus       181 ~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  244 (360)
T 1tw3_A          181 WTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFE  244 (360)
T ss_dssp             CTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTS
T ss_pred             CccCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecC-HHHHHHHHHHHHhcCCCCceEEEeCCCCC
Confidence            4567899999999999999999874  48999999 99999999999999998789999999854

>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A

Probab=97.86  E-value=1e-05  Score=86.45  Aligned_cols=61  Identities=18%  Similarity=0.215  Sum_probs=50.1

Q ss_pred             CCeEEEecCCcchhHH---HHhh-cC-----------CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHHH
Q 046527           96 GETICDMFAGIGPFAI---PAAQ-KG-----------CIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFI  157 (380)
Q Consensus        96 g~~VLDlfcGvG~fsl---~aA~-~g-----------~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~l  157 (380)
                      +.+|||+|||+|+++.   .+++ .+           .+|+|||.|+.|+..++.... |++.++|+++.+|++++-
T Consensus       410 ~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~-Ng~~d~VtVI~gd~eev~  485 (745)
T 3ua3_A          410 TVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNV-RTWKRRVTIIESDMRSLP  485 (745)
T ss_dssp             EEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHH-HTTTTCSEEEESCGGGHH
T ss_pred             CcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHh-cCCCCeEEEEeCchhhcc
Confidence            4589999999999974   3433 12           299999999999987776655 999999999999999983

>3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus}

Probab=97.84  E-value=3e-05  Score=80.53  Aligned_cols=78  Identities=14%  Similarity=0.215  Sum_probs=60.8

Q ss_pred             ceeecChHHHHHHHHHhccCCCCeEEEecCCcchhHHHHhhc---------------CCEEEEEeCCHHHHHHHHHHHHH
Q 046527           75 LVYWNSRLEHEHLRIISQFRPGETICDMFAGIGPFAIPAAQK---------------GCIVFANDLNPDSVHYLKINAKV  139 (380)
Q Consensus        75 ~ff~n~rl~tE~~r~i~~i~~g~~VLDlfcGvG~fsl~aA~~---------------g~~V~avDlnp~Aie~a~~Na~l  139 (380)
                      +-|+.|+...+.+..+....+|++|+|.+||+|.|-+.+...               ...++|+|+++.++..|+.|+.+
T Consensus       197 GqfyTP~~Vv~lmv~l~~p~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~l  276 (530)
T 3ufb_A          197 GEFYTPRPVVRFMVEVMDPQLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLLL  276 (530)
T ss_dssp             CCCCCCHHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHHH
T ss_pred             ceECCcHHHHHHHHHhhccCCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHHh
Confidence            356788866665544455678899999999999999887642               13699999999999999999999


Q ss_pred             cCCCCcEEEEeccH
Q 046527          140 NKVDNYVRAYNMDA  153 (380)
Q Consensus       140 N~l~~ri~~~~~Da  153 (380)
                      +++.. ..+.++|.
T Consensus       277 hg~~~-~~I~~~dt  289 (530)
T 3ufb_A          277 HGLEY-PRIDPENS  289 (530)
T ss_dssp             HTCSC-CEEECSCT
T ss_pred             cCCcc-cccccccc
Confidence            99874 35565554

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}

Probab=97.84  E-value=3e-05  Score=74.66  Aligned_cols=59  Identities=8%  Similarity=-0.097  Sum_probs=46.0

Q ss_pred             CCCeEEEecCCcchhHHHHhhc-CCEEEEEeCCHHHHHHHHHHHHHcCCCC-----cEEEEeccH
Q 046527           95 PGETICDMFAGIGPFAIPAAQK-GCIVFANDLNPDSVHYLKINAKVNKVDN-----YVRAYNMDA  153 (380)
Q Consensus        95 ~g~~VLDlfcGvG~fsl~aA~~-g~~V~avDlnp~Aie~a~~Na~lN~l~~-----ri~~~~~Da  153 (380)
                      ++.+|||+|||+|.....++.. +.+|+|+|+++.+++.|++.+...+...     .+++.++|+
T Consensus        48 ~~~~VLDlGCG~G~~l~~~~~~~~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~  112 (302)
T 2vdw_A           48 NKRKVLAIDFGNGADLEKYFYGEIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETI  112 (302)
T ss_dssp             SCCEEEETTCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCT
T ss_pred             CCCeEEEEecCCcHhHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhc
Confidence            4789999999999876665555 4699999999999999999887655431     256777776

>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}

Probab=97.83  E-value=1.4e-05  Score=86.71  Aligned_cols=68  Identities=19%  Similarity=0.126  Sum_probs=50.2

Q ss_pred             eeecChHHHHHH-HHH---h--ccCCCCeEEEecCCcchhHHHHhhcC-----CEEEEEeCCHHHHHHH--HHHHHHcCC
Q 046527           76 VYWNSRLEHEHL-RII---S--QFRPGETICDMFAGIGPFAIPAAQKG-----CIVFANDLNPDSVHYL--KINAKVNKV  142 (380)
Q Consensus        76 ff~n~rl~tE~~-r~i---~--~i~~g~~VLDlfcGvG~fsl~aA~~g-----~~V~avDlnp~Aie~a--~~Na~lN~l  142 (380)
                      .|+.++.....+ .++   .  ...++.+|||++||+|.|.+.++...     .+++|+|+++.+++.|  +.|+..|.+
T Consensus       296 qFYTP~eLA~lMVeLA~ill~~~l~~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~L  375 (878)
T 3s1s_A          296 VVPTDIELGKVLSIISQHILGRPLTEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQL  375 (878)
T ss_dssp             SSSCCHHHHHHHHHHHHHHHCSCCCTTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTT
T ss_pred             eEcCCHHHHHHHHHHHhhhccccCCCCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhh
Confidence            455666444433 321   1  23458899999999999999999764     3799999999999999  888776554


Q ss_pred             C
Q 046527          143 D  143 (380)
Q Consensus       143 ~  143 (380)
                      .
T Consensus       376 l  376 (878)
T 3s1s_A          376 V  376 (878)
T ss_dssp             C
T ss_pred             h
Confidence            3

>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15

Probab=97.81  E-value=8.3e-06  Score=76.13  Aligned_cols=49  Identities=18%  Similarity=0.119  Sum_probs=43.3

Q ss_pred             cCCCCeEEEecCCcchhHHHHhhcCC-EEEEEeCCHHHHHHHHHHHHHcC
Q 046527           93 FRPGETICDMFAGIGPFAIPAAQKGC-IVFANDLNPDSVHYLKINAKVNK  141 (380)
Q Consensus        93 i~~g~~VLDlfcGvG~fsl~aA~~g~-~V~avDlnp~Aie~a~~Na~lN~  141 (380)
                      ..+|.+|||+|||+|.+++.++..++ +|+|+|+++.+++.|+++++.+.
T Consensus        53 ~~~g~~vLDiGCG~G~~~~~~~~~~~~~v~g~D~s~~~l~~a~~~~~~~~  102 (263)
T 2a14_A           53 GLQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEP  102 (263)
T ss_dssp             SCCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCT
T ss_pred             CCCCceEEEeCCCccHHHHHHHHhhhcceeeccccHHHHHHHHHHHhcCC
Confidence            35788999999999999988888776 79999999999999999987653

>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*

Probab=97.78  E-value=1.4e-05  Score=76.29  Aligned_cols=35  Identities=20%  Similarity=0.120  Sum_probs=32.2

Q ss_pred             ccCCCCeEEEecCCcchhHHHHhhcCCEEEEEeCCH
Q 046527           92 QFRPGETICDMFAGIGPFAIPAAQKGCIVFANDLNP  127 (380)
Q Consensus        92 ~i~~g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp  127 (380)
                      .+.+|.+|||+|||+|.++..+++. .+|+|+|+++
T Consensus        79 ~~~~g~~VLDlGcGtG~~s~~la~~-~~V~gVD~s~  113 (276)
T 2wa2_A           79 GVELKGTVVDLGCGRGSWSYYAASQ-PNVREVKAYT  113 (276)
T ss_dssp             SCCCCEEEEEESCTTCHHHHHHHTS-TTEEEEEEEC
T ss_pred             CCCCCCEEEEeccCCCHHHHHHHHc-CCEEEEECch
Confidence            3568899999999999999999998 7999999998

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}

Probab=97.74  E-value=4.4e-05  Score=74.79  Aligned_cols=60  Identities=13%  Similarity=0.135  Sum_probs=54.0

Q ss_pred             CCCCeEEEecCCcchhHHHHhhc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHH
Q 046527           94 RPGETICDMFAGIGPFAIPAAQK--GCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAR  154 (380)
Q Consensus        94 ~~g~~VLDlfcGvG~fsl~aA~~--g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~  154 (380)
                      ....+|||+|||+|.+++.+++.  +.+|+++|+ |.+++.|++++...++.++++++.+|+.
T Consensus       178 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~  239 (363)
T 3dp7_A          178 HHPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDL-PQQLEMMRKQTAGLSGSERIHGHGANLL  239 (363)
T ss_dssp             GCCSEEEEESCTTCHHHHHHHHHSTTCEEEEEEC-HHHHHHHHHHHTTCTTGGGEEEEECCCC
T ss_pred             cCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeC-HHHHHHHHHHHHhcCcccceEEEEcccc
Confidence            35679999999999999999985  459999999 9999999999998888888999999974

>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*

Probab=97.73  E-value=6.6e-05  Score=73.66  Aligned_cols=61  Identities=13%  Similarity=0.032  Sum_probs=55.7

Q ss_pred             cCCCCeEEEecCCcchhHHHHhhc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHH
Q 046527           93 FRPGETICDMFAGIGPFAIPAAQK--GCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAR  154 (380)
Q Consensus        93 i~~g~~VLDlfcGvG~fsl~aA~~--g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~  154 (380)
                      +.++.+|||+|||+|.++..+++.  +.+++++|+ |.+++.+++++...++.+++++..+|+.
T Consensus       200 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~l~~~v~~~~~d~~  262 (369)
T 3gwz_A          200 FSGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLER-PPVAEEARELLTGRGLADRCEILPGDFF  262 (369)
T ss_dssp             CTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTT
T ss_pred             CccCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcC-HHHHHHHHHhhhhcCcCCceEEeccCCC
Confidence            456789999999999999999987  459999999 9999999999999999888999999986

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}

Probab=97.73  E-value=5.2e-05  Score=67.36  Aligned_cols=53  Identities=13%  Similarity=0.051  Sum_probs=45.8

Q ss_pred             cCCCCeEEEecCCcchhHHHHhhcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHH
Q 046527           93 FRPGETICDMFAGIGPFAIPAAQKGC-IVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAR  154 (380)
Q Consensus        93 i~~g~~VLDlfcGvG~fsl~aA~~g~-~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~  154 (380)
                      ..++.+|||+|||+|.++..+   +. +|+++|+++.+++.++++.      .++.++++|+.
T Consensus        34 ~~~~~~vLdiG~G~G~~~~~l---~~~~v~~vD~s~~~~~~a~~~~------~~~~~~~~d~~   87 (211)
T 2gs9_A           34 LPPGESLLEVGAGTGYWLRRL---PYPQKVGVEPSEAMLAVGRRRA------PEATWVRAWGE   87 (211)
T ss_dssp             CCCCSEEEEETCTTCHHHHHC---CCSEEEEECCCHHHHHHHHHHC------TTSEEECCCTT
T ss_pred             cCCCCeEEEECCCCCHhHHhC---CCCeEEEEeCCHHHHHHHHHhC------CCcEEEEcccc
Confidence            347889999999999999887   66 9999999999999999886      24788888865

>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}

Probab=97.73  E-value=2e-05  Score=76.11  Aligned_cols=58  Identities=21%  Similarity=0.237  Sum_probs=45.5

Q ss_pred             ecChHHHHHHHHHhcc---CCCCeEEEecCCcchhHHHHhhcCC-EEEEEeCCHHHHHHHHH
Q 046527           78 WNSRLEHEHLRIISQF---RPGETICDMFAGIGPFAIPAAQKGC-IVFANDLNPDSVHYLKI  135 (380)
Q Consensus        78 ~n~rl~tE~~r~i~~i---~~g~~VLDlfcGvG~fsl~aA~~g~-~V~avDlnp~Aie~a~~  135 (380)
                      |.+|-.......+..+   .+|.+|||+|||+|.|+..+++.|+ +|+|+|+++.+++++.+
T Consensus        65 yvsrg~~Kl~~~l~~~~~~~~g~~vLDiGcGTG~~t~~L~~~ga~~V~aVDvs~~mL~~a~r  126 (291)
T 3hp7_A           65 YVSRGGLKLEKALAVFNLSVEDMITIDIGASTGGFTDVMLQNGAKLVYAVDVGTNQLVWKLR  126 (291)
T ss_dssp             SSSTTHHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSSSCSCHHHH
T ss_pred             cccchHHHHHHHHHhcCCCccccEEEecCCCccHHHHHHHhCCCCEEEEEECCHHHHHHHHH
Confidence            5566555444444433   3578999999999999999999876 99999999999998544

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41

Probab=97.72  E-value=5.1e-05  Score=70.21  Aligned_cols=46  Identities=13%  Similarity=0.210  Sum_probs=42.2

Q ss_pred             cCCCCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHHHHH
Q 046527           93 FRPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAK  138 (380)
Q Consensus        93 i~~g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~  138 (380)
                      +.++.+|||+|||+|.++..++..+.+|+++|+++.+++.++++..
T Consensus        52 ~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~   97 (260)
T 2avn_A           52 LKNPCRVLDLGGGTGKWSLFLQERGFEVVLVDPSKEMLEVAREKGV   97 (260)
T ss_dssp             CCSCCEEEEETCTTCHHHHHHHTTTCEEEEEESCHHHHHHHHHHTC
T ss_pred             cCCCCeEEEeCCCcCHHHHHHHHcCCeEEEEeCCHHHHHHHHhhcC
Confidence            3578899999999999999999999999999999999999998753

>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}

Probab=97.70  E-value=3.1e-05  Score=73.36  Aligned_cols=35  Identities=17%  Similarity=0.121  Sum_probs=32.4

Q ss_pred             ccCCCCeEEEecCCcchhHHHHhhcCCEEEEEeCCH
Q 046527           92 QFRPGETICDMFAGIGPFAIPAAQKGCIVFANDLNP  127 (380)
Q Consensus        92 ~i~~g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp  127 (380)
                      .+.+|.+|||+|||+|.++..+++. .+|+|+|+++
T Consensus        71 ~~~~g~~VLDlGcGtG~~s~~la~~-~~V~gvD~s~  105 (265)
T 2oxt_A           71 YVELTGRVVDLGCGRGGWSYYAASR-PHVMDVRAYT  105 (265)
T ss_dssp             SCCCCEEEEEESCTTSHHHHHHHTS-TTEEEEEEEC
T ss_pred             CCCCCCEEEEeCcCCCHHHHHHHHc-CcEEEEECch
Confidence            4678999999999999999999988 7999999998

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=97.70  E-value=8.2e-05  Score=68.78  Aligned_cols=55  Identities=13%  Similarity=0.100  Sum_probs=47.7

Q ss_pred             CCCCeEEEecCCcchhHHHHhhc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHH
Q 046527           94 RPGETICDMFAGIGPFAIPAAQK--GCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAR  154 (380)
Q Consensus        94 ~~g~~VLDlfcGvG~fsl~aA~~--g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~  154 (380)
                      .++.+|||+|||+|.++..+++.  +.+|+++|+++.+++.|+++.     . ++.+..+|+.
T Consensus        84 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~-----~-~~~~~~~d~~  140 (269)
T 1p91_A           84 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY-----P-QVTFCVASSH  140 (269)
T ss_dssp             TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC-----T-TSEEEECCTT
T ss_pred             CCCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhC-----C-CcEEEEcchh
Confidence            57889999999999999999987  679999999999999998874     2 3678888764

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}

Probab=97.68  E-value=4.3e-05  Score=73.81  Aligned_cols=61  Identities=13%  Similarity=0.196  Sum_probs=55.2

Q ss_pred             CC-CCeEEEecCCcchhHHHHhhc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHH
Q 046527           94 RP-GETICDMFAGIGPFAIPAAQK--GCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDARE  155 (380)
Q Consensus        94 ~~-g~~VLDlfcGvG~fsl~aA~~--g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e  155 (380)
                      .+ +.+|||+|||+|.++..+++.  +.+++++|+ |.+++.+++++...++.+++++..+|+.+
T Consensus       177 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  240 (352)
T 3mcz_A          177 FARARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDL-PTTRDAARKTIHAHDLGGRVEFFEKNLLD  240 (352)
T ss_dssp             GTTCCEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCGGGEEEEECCTTC
T ss_pred             cCCCCEEEEeCCCcCHHHHHHHHhCCCCeEEEEEC-HHHHHHHHHHHHhcCCCCceEEEeCCccc
Confidence            45 789999999999999999987  459999999 89999999999999998889999999764

>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}

Probab=97.65  E-value=4.4e-05  Score=67.29  Aligned_cols=51  Identities=10%  Similarity=0.046  Sum_probs=41.9

Q ss_pred             cCCCCeEEEecCCcchhHHHHhhc----CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHH
Q 046527           93 FRPGETICDMFAGIGPFAIPAAQK----GCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDARE  155 (380)
Q Consensus        93 i~~g~~VLDlfcGvG~fsl~aA~~----g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e  155 (380)
                      +.++.+|||+|||+|.+++.+++.    +++|+|+|+++.+           ... +++++++|+.+
T Consensus        20 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~-----------~~~-~v~~~~~d~~~   74 (201)
T 2plw_A           20 LKKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD-----------PIP-NVYFIQGEIGK   74 (201)
T ss_dssp             CCTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC-----------CCT-TCEEEECCTTT
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC-----------CCC-CceEEEccccc
Confidence            578899999999999999999976    3699999999932           233 48899998865

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}

Probab=97.64  E-value=4.8e-05  Score=67.65  Aligned_cols=54  Identities=13%  Similarity=0.102  Sum_probs=46.5

Q ss_pred             CCCCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHH
Q 046527           94 RPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDARE  155 (380)
Q Consensus        94 ~~g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e  155 (380)
                      .++.+|||+|||+|.++..++..+.+|+++|+++.+++.++++.        ..++.+|+.+
T Consensus        31 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~D~~~~~~~~~~~~~--------~~~~~~d~~~   84 (230)
T 3cc8_A           31 KEWKEVLDIGCSSGALGAAIKENGTRVSGIEAFPEAAEQAKEKL--------DHVVLGDIET   84 (230)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHTTTCEEEEEESSHHHHHHHHTTS--------SEEEESCTTT
T ss_pred             cCCCcEEEeCCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHhC--------CcEEEcchhh
Confidence            57889999999999999999988889999999999999988764        2567777653

>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}

Probab=97.61  E-value=0.0002  Score=67.80  Aligned_cols=59  Identities=15%  Similarity=0.081  Sum_probs=49.1

Q ss_pred             CCCeEEEecCCc---chhHHHHhhc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHH
Q 046527           95 PGETICDMFAGI---GPFAIPAAQK--GCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREF  156 (380)
Q Consensus        95 ~g~~VLDlfcGv---G~fsl~aA~~--g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~  156 (380)
                      ...+|||+|||+   |.++..+++.  +.+|+++|++|.+++.|++++..   .++++++++|+.+.
T Consensus        77 ~~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~---~~~v~~~~~D~~~~  140 (274)
T 2qe6_A           77 GISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAK---DPNTAVFTADVRDP  140 (274)
T ss_dssp             CCCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTT---CTTEEEEECCTTCH
T ss_pred             CCCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCC---CCCeEEEEeeCCCc
Confidence            347999999999   9988766654  56999999999999999998843   24699999999764

>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}

Probab=97.56  E-value=3.3e-05  Score=74.11  Aligned_cols=61  Identities=18%  Similarity=0.093  Sum_probs=54.2

Q ss_pred             cCCCCeEEEecCCcchhHHHHhhc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHH
Q 046527           93 FRPGETICDMFAGIGPFAIPAAQK--GCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDARE  155 (380)
Q Consensus        93 i~~g~~VLDlfcGvG~fsl~aA~~--g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e  155 (380)
                      +.+ .+|||+|||+|.++..+++.  +.+++++|+ +.+++.+++++..+++.++++++.+|+.+
T Consensus       166 ~~~-~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  228 (334)
T 2ip2_A          166 FRG-RSFVDVGGGSGELTKAILQAEPSARGVMLDR-EGSLGVARDNLSSLLAGERVSLVGGDMLQ  228 (334)
T ss_dssp             CTT-CEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-TTCTHHHHHHTHHHHHTTSEEEEESCTTT
T ss_pred             CCC-CEEEEeCCCchHHHHHHHHHCCCCEEEEeCc-HHHHHHHHHHHhhcCCCCcEEEecCCCCC
Confidence            345 89999999999999999987  459999999 99999999999888887789999999864

>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*

Probab=97.55  E-value=0.00032  Score=69.46  Aligned_cols=44  Identities=9%  Similarity=0.037  Sum_probs=40.7

Q ss_pred             cCCCCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHHH
Q 046527           93 FRPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKIN  136 (380)
Q Consensus        93 i~~g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~N  136 (380)
                      +.++.+|||+|||+|.++..++..+.+|+|+|+++.+++.|+++
T Consensus       105 ~~~~~~VLDiGcG~G~~~~~l~~~g~~v~gvD~s~~~~~~a~~~  148 (416)
T 4e2x_A          105 TGPDPFIVEIGCNDGIMLRTIQEAGVRHLGFEPSSGVAAKAREK  148 (416)
T ss_dssp             CSSSCEEEEETCTTTTTHHHHHHTTCEEEEECCCHHHHHHHHTT
T ss_pred             CCCCCEEEEecCCCCHHHHHHHHcCCcEEEECCCHHHHHHHHHc
Confidence            35788999999999999999999999999999999999998876

>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...

Probab=97.43  E-value=9.2e-05  Score=69.53  Aligned_cols=45  Identities=16%  Similarity=0.037  Sum_probs=38.6

Q ss_pred             CCCeEEEecCCcchhHHHHhh-cCCEEEEEeCCHHHHHHHHHHHHH
Q 046527           95 PGETICDMFAGIGPFAIPAAQ-KGCIVFANDLNPDSVHYLKINAKV  139 (380)
Q Consensus        95 ~g~~VLDlfcGvG~fsl~aA~-~g~~V~avDlnp~Aie~a~~Na~l  139 (380)
                      ++.+|||+|||+|.+++.++. .+.+|+|+|+++.+++.|+++++.
T Consensus        71 ~~~~vLDiGcG~G~~~~l~~~~~~~~v~gvD~s~~~l~~a~~~~~~  116 (289)
T 2g72_A           71 SGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQE  116 (289)
T ss_dssp             CCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTT
T ss_pred             CCCeEEEECCCcChHHHHhhccCCCeEEEeCCCHHHHHHHHHHHhh
Confidence            678999999999997766655 366999999999999999998754

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41

Probab=97.42  E-value=0.0002  Score=64.27  Aligned_cols=55  Identities=16%  Similarity=0.175  Sum_probs=45.8

Q ss_pred             HHHhccCCCCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHH
Q 046527           88 RIISQFRPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAR  154 (380)
Q Consensus        88 r~i~~i~~g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~  154 (380)
                      ..+..+.++.+|||+|||+|.++..++..    +++|+++.+++.++++        +++++++|+.
T Consensus        40 ~~l~~~~~~~~vLDiG~G~G~~~~~l~~~----~~vD~s~~~~~~a~~~--------~~~~~~~d~~   94 (219)
T 1vlm_A           40 QAVKCLLPEGRGVEIGVGTGRFAVPLKIK----IGVEPSERMAEIARKR--------GVFVLKGTAE   94 (219)
T ss_dssp             HHHHHHCCSSCEEEETCTTSTTHHHHTCC----EEEESCHHHHHHHHHT--------TCEEEECBTT
T ss_pred             HHHHHhCCCCcEEEeCCCCCHHHHHHHHH----hccCCCHHHHHHHHhc--------CCEEEEcccc
Confidence            34444556899999999999999998876    9999999999999987        3678888864

>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*

Probab=97.40  E-value=5.4e-05  Score=73.18  Aligned_cols=46  Identities=15%  Similarity=0.053  Sum_probs=35.2

Q ss_pred             cChHHHHHHHHH--hccCCCCeEEEecCCcchhHHHHhhcCCEEEEEeC
Q 046527           79 NSRLEHEHLRII--SQFRPGETICDMFAGIGPFAIPAAQKGCIVFANDL  125 (380)
Q Consensus        79 n~rl~tE~~r~i--~~i~~g~~VLDlfcGvG~fsl~aA~~g~~V~avDl  125 (380)
                      .+|.......+.  ..+.+|.+|||+|||+|.++..+++. .+|+|+|+
T Consensus        64 ~sR~a~KL~~i~~~~~~~~g~~VLDlGcG~G~~s~~la~~-~~V~gvD~  111 (305)
T 2p41_A           64 VSRGSAKLRWFVERNLVTPEGKVVDLGCGRGGWSYYCGGL-KNVREVKG  111 (305)
T ss_dssp             SSTHHHHHHHHHHTTSSCCCEEEEEETCTTSHHHHHHHTS-TTEEEEEE
T ss_pred             cccHHHHHHHHHHcCCCCCCCEEEEEcCCCCHHHHHHHhc-CCEEEEec
Confidence            445444433333  23567899999999999999999998 68999998

>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}

Probab=97.37  E-value=0.00049  Score=61.20  Aligned_cols=37  Identities=19%  Similarity=0.030  Sum_probs=31.0

Q ss_pred             HHhccCCCCeEEEecCCcchhHHHHhhcCCEEEEEeCCHH
Q 046527           89 IISQFRPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPD  128 (380)
Q Consensus        89 ~i~~i~~g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~  128 (380)
                      .+....++.+|||+|||+|.++..++   .+|+++|+++.
T Consensus        61 ~l~~~~~~~~vLDiG~G~G~~~~~l~---~~v~~~D~s~~   97 (215)
T 2zfu_A           61 DLRQRPASLVVADFGCGDCRLASSIR---NPVHCFDLASL   97 (215)
T ss_dssp             HHHTSCTTSCEEEETCTTCHHHHHCC---SCEEEEESSCS
T ss_pred             HHhccCCCCeEEEECCcCCHHHHHhh---ccEEEEeCCCC
Confidence            33445678899999999999998774   68999999997

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*

Probab=97.29  E-value=0.00051  Score=64.70  Aligned_cols=65  Identities=11%  Similarity=0.132  Sum_probs=47.0

Q ss_pred             CCCCeEEEecCCcchhHHHHh----hc--CCEE--EEEeCCHHHHHHHHHHHHHc-CCCC-cEEEEeccHHHHHH
Q 046527           94 RPGETICDMFAGIGPFAIPAA----QK--GCIV--FANDLNPDSVHYLKINAKVN-KVDN-YVRAYNMDAREFIR  158 (380)
Q Consensus        94 ~~g~~VLDlfcGvG~fsl~aA----~~--g~~V--~avDlnp~Aie~a~~Na~lN-~l~~-ri~~~~~Da~e~l~  158 (380)
                      .++.+|||+|||+|.++..++    ..  +..|  +++|.|+.+++.|++.+... ++.+ ++.+..+|+.++..
T Consensus        51 ~~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~  125 (292)
T 2aot_A           51 KSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQS  125 (292)
T ss_dssp             CSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHH
T ss_pred             CCCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhhh
Confidence            456799999999998776432    22  3444  99999999999999998754 4543 23456778876543

>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11

Probab=97.26  E-value=8.8e-05  Score=72.07  Aligned_cols=62  Identities=13%  Similarity=0.178  Sum_probs=50.9

Q ss_pred             cCCCCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHH
Q 046527           93 FRPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREF  156 (380)
Q Consensus        93 i~~g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~  156 (380)
                      -.+|+.|||.|||+|+.++.+.+.|.+.+++|+++..++.+++++...+..  ...++.|++++
T Consensus       250 ~~~~~~VlDpF~GsGtt~~aa~~~gr~~ig~e~~~~~~~~~~~r~~~~~~~--~~~~~~~~~~i  311 (323)
T 1boo_A          250 TEPDDLVVDIFGGSNTTGLVAERESRKWISFEMKPEYVAASAFRFLDNNIS--EEKITDIYNRI  311 (323)
T ss_dssp             CCTTCEEEETTCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHGGGSCSCSC--HHHHHHHHHHH
T ss_pred             CCCCCEEEECCCCCCHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHhcccc--hHHHHHHHHHH
Confidence            368999999999999999999999999999999999999999988655543  34445555544

>2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56

Probab=97.21  E-value=0.00069  Score=67.92  Aligned_cols=59  Identities=14%  Similarity=0.042  Sum_probs=49.8

Q ss_pred             CCCCeEEEecCCcchhHHHHh-hc-C--CEEEEEeCCHHHHHHHHHHHHH--cCCC-CcEEEEecc
Q 046527           94 RPGETICDMFAGIGPFAIPAA-QK-G--CIVFANDLNPDSVHYLKINAKV--NKVD-NYVRAYNMD  152 (380)
Q Consensus        94 ~~g~~VLDlfcGvG~fsl~aA-~~-g--~~V~avDlnp~Aie~a~~Na~l--N~l~-~ri~~~~~D  152 (380)
                      .++++|+|+||++|.+++.++ +. +  ++|+++|.+|.+++.+++|++.  |+.. +++++++.-
T Consensus       225 ~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L~~n~~~~~N~~~~~~v~~~~~a  290 (409)
T 2py6_A          225 SDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTDTNFASRITVHGCG  290 (409)
T ss_dssp             CSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTTTSTTGGGEEEECSE
T ss_pred             CCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhhhccCCCCCEEEEEeE
Confidence            688999999999999999887 43 3  5999999999999999999998  5433 568888653

>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}

Probab=97.17  E-value=0.0011  Score=60.78  Aligned_cols=62  Identities=18%  Similarity=0.100  Sum_probs=53.1

Q ss_pred             ccCCCCeEEEecCCcchhHHHHhhc-CCEEEEEeCCHHHHHHHHHHHHHcCC--CCcEEEEeccHHH
Q 046527           92 QFRPGETICDMFAGIGPFAIPAAQK-GCIVFANDLNPDSVHYLKINAKVNKV--DNYVRAYNMDARE  155 (380)
Q Consensus        92 ~i~~g~~VLDlfcGvG~fsl~aA~~-g~~V~avDlnp~Aie~a~~Na~lN~l--~~ri~~~~~Da~e  155 (380)
                      .+.+.++||++|||  .-++.+|+. +.+|+++|.+++.++.|++|++.+++  .++|+++.+|+.+
T Consensus        27 ~l~~a~~VLEiGtG--ySTl~lA~~~~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda~~   91 (202)
T 3cvo_A           27 AYEEAEVILEYGSG--GSTVVAAELPGKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWTDIGP   91 (202)
T ss_dssp             HHHHCSEEEEESCS--HHHHHHHTSTTCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEECCCSS
T ss_pred             HhhCCCEEEEECch--HHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeCchh
Confidence            34567899999985  567777775 67999999999999999999999998  7889999999764

>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli}

Probab=97.16  E-value=0.00092  Score=65.88  Aligned_cols=80  Identities=16%  Similarity=0.109  Sum_probs=60.2

Q ss_pred             eeecChHHHHHHHHHhccCCCCeEEEecCCcchhHHHHhhc-C--CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEecc
Q 046527           76 VYWNSRLEHEHLRIISQFRPGETICDMFAGIGPFAIPAAQK-G--CIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMD  152 (380)
Q Consensus        76 ff~n~rl~tE~~r~i~~i~~g~~VLDlfcGvG~fsl~aA~~-g--~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~D  152 (380)
                      |+..+-+-.|.+..+ .+.+|.+++|..+|.|.-+..+++. +  .+|+|+|.+|+|++.++ .+    ..+++++++++
T Consensus        39 ~~H~pVLl~Evl~~L-~i~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~-rL----~~~Rv~lv~~n  112 (347)
T 3tka_A           39 YKHTTVLLDEAVNGL-NIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK-TI----DDPRFSIIHGP  112 (347)
T ss_dssp             ---CCTTTHHHHHHT-CCCTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHT-TC----CCTTEEEEESC
T ss_pred             CCcccccHHHHHHhh-CCCCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-hh----cCCcEEEEeCC
Confidence            334455555555443 3678999999999999999999976 3  49999999999999984 32    24679999999


Q ss_pred             HHHHHHHHh
Q 046527          153 AREFIRQLM  161 (380)
Q Consensus       153 a~e~l~~l~  161 (380)
                      ..++...+.
T Consensus       113 F~~l~~~L~  121 (347)
T 3tka_A          113 FSALGEYVA  121 (347)
T ss_dssp             GGGHHHHHH
T ss_pred             HHHHHHHHH
Confidence            888766554

>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*

Probab=97.09  E-value=0.0006  Score=65.00  Aligned_cols=43  Identities=21%  Similarity=0.252  Sum_probs=35.9

Q ss_pred             CCCeEEEecCCcch----hHHHHhhc------CCEEEEEeCCHHHHHHHHHHH
Q 046527           95 PGETICDMFAGIGP----FAIPAAQK------GCIVFANDLNPDSVHYLKINA  137 (380)
Q Consensus        95 ~g~~VLDlfcGvG~----fsl~aA~~------g~~V~avDlnp~Aie~a~~Na  137 (380)
                      ++.+|||+|||+|-    +++.++..      +.+|+|+|+|+.+++.|++++
T Consensus       105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~  157 (274)
T 1af7_A          105 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGI  157 (274)
T ss_dssp             SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTE
T ss_pred             CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcC
Confidence            45699999999998    66666654      248999999999999999875

>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157}

Probab=97.02  E-value=0.00067  Score=67.50  Aligned_cols=55  Identities=20%  Similarity=0.353  Sum_probs=46.8

Q ss_pred             CeEEEecCCcchhHHHHhhcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHHH
Q 046527           97 ETICDMFAGIGPFAIPAAQKGC-IVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFI  157 (380)
Q Consensus        97 ~~VLDlfcGvG~fsl~aA~~g~-~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~l  157 (380)
                      -+|+|||||+|.+++-+.+.|. .|+++|+++.|++..+.|.     .+ ..++++|+.++.
T Consensus         3 ~~vidLFsG~GGlslG~~~aG~~~v~avE~d~~a~~t~~~N~-----~~-~~~~~~DI~~~~   58 (376)
T 3g7u_A            3 LNVIDLFSGVGGLSLGAARAGFDVKMAVEIDQHAINTHAINF-----PR-SLHVQEDVSLLN   58 (376)
T ss_dssp             CEEEEETCTTSHHHHHHHHHTCEEEEEECSCHHHHHHHHHHC-----TT-SEEECCCGGGCC
T ss_pred             CeEEEEccCcCHHHHHHHHCCCcEEEEEeCCHHHHHHHHHhC-----CC-CceEecChhhcC
Confidence            4799999999999999998888 5779999999999999884     22 567889987763

>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24

Probab=97.00  E-value=0.0014  Score=64.84  Aligned_cols=58  Identities=10%  Similarity=0.110  Sum_probs=50.3

Q ss_pred             CCCeEEEecCCcchhHHHHhhc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHH
Q 046527           95 PGETICDMFAGIGPFAIPAAQK--GCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREF  156 (380)
Q Consensus        95 ~g~~VLDlfcGvG~fsl~aA~~--g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~  156 (380)
                      +++.|||+|.|.|.++..++..  +.+|+++|+++..+..+++.. .   .++++++++|+.++
T Consensus        58 ~~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~~~L~~~~-~---~~~l~ii~~D~l~~  117 (353)
T 1i4w_A           58 EELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKF-E---GSPLQILKRDPYDW  117 (353)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHT-T---TSSCEEECSCTTCH
T ss_pred             CCCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHHHHHHHhc-c---CCCEEEEECCccch
Confidence            3689999999999999999976  569999999999999999876 2   24699999999665

>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*

Probab=96.99  E-value=0.00082  Score=64.46  Aligned_cols=60  Identities=17%  Similarity=0.055  Sum_probs=47.0

Q ss_pred             CeEEEecCCc--chhHHHHhhc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHHH
Q 046527           97 ETICDMFAGI--GPFAIPAAQK---GCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFI  157 (380)
Q Consensus        97 ~~VLDlfcGv--G~fsl~aA~~---g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~l  157 (380)
                      ..|||+|||+  |.....+++.   +++|+++|.||.+++.|+..+..+. ..+++++++|+++.-
T Consensus        80 ~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~-~~~~~~v~aD~~~~~  144 (277)
T 3giw_A           80 RQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTP-EGRTAYVEADMLDPA  144 (277)
T ss_dssp             CEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCS-SSEEEEEECCTTCHH
T ss_pred             CEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCC-CCcEEEEEecccChh
Confidence            6899999997  4445555443   5799999999999999998876443 246999999998763

>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*

Probab=96.98  E-value=0.00063  Score=65.52  Aligned_cols=48  Identities=21%  Similarity=0.164  Sum_probs=34.6

Q ss_pred             ccCCCCeEEEecCCc------chhHHHHhhc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEE-EeccHH
Q 046527           92 QFRPGETICDMFAGI------GPFAIPAAQK--GCIVFANDLNPDSVHYLKINAKVNKVDNYVRA-YNMDAR  154 (380)
Q Consensus        92 ~i~~g~~VLDlfcGv------G~fsl~aA~~--g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~-~~~Da~  154 (380)
                      .+.+|.+|||+|||+      |. .+.+...  +.+|+|+|+++.             +. ++++ +++|+.
T Consensus        60 ~l~~g~~VLDLGcGsg~~~GpGs-~~~a~~~~~~~~V~gvDis~~-------------v~-~v~~~i~gD~~  116 (290)
T 2xyq_A           60 AVPYNMRVIHFGAGSDKGVAPGT-AVLRQWLPTGTLLVDSDLNDF-------------VS-DADSTLIGDCA  116 (290)
T ss_dssp             CCCTTCEEEEESCCCTTSBCHHH-HHHHHHSCTTCEEEEEESSCC-------------BC-SSSEEEESCGG
T ss_pred             CCCCCCEEEEeCCCCCCCCCcHH-HHHHHHcCCCCEEEEEECCCC-------------CC-CCEEEEECccc
Confidence            467899999999944      66 3333233  369999999998             12 3778 888875

>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}

Probab=96.96  E-value=0.0032  Score=59.40  Aligned_cols=66  Identities=17%  Similarity=0.051  Sum_probs=46.5

Q ss_pred             CCCeEEEecCCcchhHHHHhhc-------C-------CEEEEEeCCH---H-----------HHHHHHHHHHHc------
Q 046527           95 PGETICDMFAGIGPFAIPAAQK-------G-------CIVFANDLNP---D-----------SVHYLKINAKVN------  140 (380)
Q Consensus        95 ~g~~VLDlfcGvG~fsl~aA~~-------g-------~~V~avDlnp---~-----------Aie~a~~Na~lN------  140 (380)
                      ++.+|||+|+|+|.-++.+++.       +       ..++++|..|   +           ..++++.+++..      
T Consensus        60 ~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~g  139 (257)
T 2qy6_A           60 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG  139 (257)
T ss_dssp             SEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCSE
T ss_pred             CCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhccccccc
Confidence            4569999999999988876542       1       3899999987   3           333667776541      


Q ss_pred             ----CCC---CcEEEEeccHHHHHHHH
Q 046527          141 ----KVD---NYVRAYNMDAREFIRQL  160 (380)
Q Consensus       141 ----~l~---~ri~~~~~Da~e~l~~l  160 (380)
                          .+.   .+++++.+|+.+.+..+
T Consensus       140 ~~r~~~~~~~~~l~l~~GDa~~~l~~~  166 (257)
T 2qy6_A          140 CHRLLLDEGRVTLDLWFGDINELISQL  166 (257)
T ss_dssp             EEEEEEC--CEEEEEEESCHHHHGGGS
T ss_pred             hhheeccCCceEEEEEECcHHHHHhhc
Confidence                122   35789999999986543

>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26

Probab=96.95  E-value=0.00046  Score=67.59  Aligned_cols=55  Identities=15%  Similarity=0.210  Sum_probs=46.7

Q ss_pred             CeEEEecCCcchhHHHHhhcC--C-EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHHH
Q 046527           97 ETICDMFAGIGPFAIPAAQKG--C-IVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFI  157 (380)
Q Consensus        97 ~~VLDlfcGvG~fsl~aA~~g--~-~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~l  157 (380)
                      .+|+|||||+|.+++.+...|  . .|+++|+++.|++..+.|..     + ..++++|+.++.
T Consensus         3 ~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N~~-----~-~~~~~~Di~~~~   60 (343)
T 1g55_A            3 LRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFP-----H-TQLLAKTIEGIT   60 (343)
T ss_dssp             EEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCT-----T-SCEECSCGGGCC
T ss_pred             CeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHhcc-----c-cccccCCHHHcc
Confidence            479999999999999999888  3 69999999999999999963     2 346788987764

>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A

Probab=96.82  E-value=0.00095  Score=64.92  Aligned_cols=49  Identities=29%  Similarity=0.317  Sum_probs=42.5

Q ss_pred             cCCCCeEEEecCCcchhHHHHhhcCCEEEEEeCCH---HHHHHHHHHHHHcC
Q 046527           93 FRPGETICDMFAGIGPFAIPAAQKGCIVFANDLNP---DSVHYLKINAKVNK  141 (380)
Q Consensus        93 i~~g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp---~Aie~a~~Na~lN~  141 (380)
                      -.+|+.|||.|||+|..++.+.+.|.+.+++|+++   ..++.+++++...+
T Consensus       240 ~~~~~~vlDpF~GsGtt~~aa~~~~r~~ig~e~~~~~~~~~~~~~~Rl~~~~  291 (319)
T 1eg2_A          240 SHPGSTVLDFFAGSGVTARVAIQEGRNSICTDAAPVFKEYYQKQLTFLQDDG  291 (319)
T ss_dssp             SCTTCEEEETTCTTCHHHHHHHHHTCEEEEEESSTHHHHHHHHHHHHC----
T ss_pred             CCCCCEEEecCCCCCHHHHHHHHcCCcEEEEECCccHHHHHHHHHHHHHHcc
Confidence            36899999999999999999999999999999999   99999999887654

>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}

Probab=96.82  E-value=0.00041  Score=60.85  Aligned_cols=41  Identities=15%  Similarity=0.092  Sum_probs=36.7

Q ss_pred             hccCCCCeEEEecCCcch-hHHHHhh-cCCEEEEEeCCHHHHH
Q 046527           91 SQFRPGETICDMFAGIGP-FAIPAAQ-KGCIVFANDLNPDSVH  131 (380)
Q Consensus        91 ~~i~~g~~VLDlfcGvG~-fsl~aA~-~g~~V~avDlnp~Aie  131 (380)
                      ..+.++.+|||+|||.|. .+..++. .|..|+++|+||.+++
T Consensus        31 ~~~~~~~rVlEVG~G~g~~vA~~La~~~g~~V~atDInp~Av~   73 (153)
T 2k4m_A           31 RCSGPGTRVVEVGAGRFLYVSDYIRKHSKVDLVLTDIKPSHGG   73 (153)
T ss_dssp             HHSCSSSEEEEETCTTCCHHHHHHHHHSCCEEEEECSSCSSTT
T ss_pred             hcCCCCCcEEEEccCCChHHHHHHHHhCCCeEEEEECCccccc
Confidence            456677899999999995 9999997 8899999999999988

>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}

Probab=96.71  E-value=0.00057  Score=66.22  Aligned_cols=59  Identities=17%  Similarity=0.142  Sum_probs=46.3

Q ss_pred             cCCCCeEEEecCCcchhHHHHhhcC--CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHH
Q 046527           93 FRPGETICDMFAGIGPFAIPAAQKG--CIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAR  154 (380)
Q Consensus        93 i~~g~~VLDlfcGvG~fsl~aA~~g--~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~  154 (380)
                      +.++.+|||+|||+|.++..+++..  .+++++|+ +..+.  +.+++..++.+++++..+|+.
T Consensus       182 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~--~~~~~~~~~~~~v~~~~~d~~  242 (348)
T 3lst_A          182 FPATGTVADVGGGRGGFLLTVLREHPGLQGVLLDR-AEVVA--RHRLDAPDVAGRWKVVEGDFL  242 (348)
T ss_dssp             CCSSEEEEEETCTTSHHHHHHHHHCTTEEEEEEEC-HHHHT--TCCCCCGGGTTSEEEEECCTT
T ss_pred             ccCCceEEEECCccCHHHHHHHHHCCCCEEEEecC-HHHhh--cccccccCCCCCeEEEecCCC
Confidence            4567899999999999999999864  48999999 55554  444444466678999999985

>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*

Probab=96.70  E-value=0.0014  Score=63.96  Aligned_cols=60  Identities=18%  Similarity=0.232  Sum_probs=49.6

Q ss_pred             cCCCCeEEEecCCcchhHHHHhhcC--CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHH
Q 046527           93 FRPGETICDMFAGIGPFAIPAAQKG--CIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAR  154 (380)
Q Consensus        93 i~~g~~VLDlfcGvG~fsl~aA~~g--~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~  154 (380)
                      +....+|+|+|||+|.+++.++++.  .+++..|+ |..++.+++++...+ .++|++..+|..
T Consensus       177 ~~~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dl-p~v~~~a~~~~~~~~-~~rv~~~~gD~~  238 (353)
T 4a6d_A          177 LSVFPLMCDLGGGAGALAKECMSLYPGCKITVFDI-PEVVWTAKQHFSFQE-EEQIDFQEGDFF  238 (353)
T ss_dssp             GGGCSEEEEETCTTSHHHHHHHHHCSSCEEEEEEC-HHHHHHHHHHSCC---CCSEEEEESCTT
T ss_pred             cccCCeEEeeCCCCCHHHHHHHHhCCCceeEeccC-HHHHHHHHHhhhhcc-cCceeeecCccc
Confidence            4567899999999999999999874  38888887 899999999886544 567999999975

>2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ...

Probab=96.56  E-value=0.0032  Score=61.38  Aligned_cols=53  Identities=23%  Similarity=0.402  Sum_probs=44.4

Q ss_pred             CCeEEEecCCcchhHHHHhhcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHH
Q 046527           96 GETICDMFAGIGPFAIPAAQKGC-IVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREF  156 (380)
Q Consensus        96 g~~VLDlfcGvG~fsl~aA~~g~-~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~  156 (380)
                      +-+|+|||||+|.+++.+.+.|. .|+++|+++.|++..+.|....     .   ++|+.++
T Consensus        11 ~~~~~dLFaG~Gg~~~g~~~aG~~~v~~~e~d~~a~~t~~~N~~~~-----~---~~Di~~~   64 (327)
T 2c7p_A           11 GLRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQEVYEMNFGEK-----P---EGDITQV   64 (327)
T ss_dssp             TCEEEEETCTTTHHHHHHHHTTCEEEEEECCCHHHHHHHHHHHSCC-----C---BSCGGGS
T ss_pred             CCcEEEECCCcCHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHcCCC-----C---cCCHHHc
Confidence            46899999999999999998887 6899999999999999996311     1   5777764

>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*

Probab=96.51  E-value=0.0013  Score=63.80  Aligned_cols=55  Identities=24%  Similarity=0.167  Sum_probs=46.0

Q ss_pred             cCCCCeEEEecCCcchhHHHHhhc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHH
Q 046527           93 FRPGETICDMFAGIGPFAIPAAQK--GCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDARE  155 (380)
Q Consensus        93 i~~g~~VLDlfcGvG~fsl~aA~~--g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e  155 (380)
                      +.++.+|||+|||+|.++..+++.  +.+++++|+ |.+++.+++      ..+ +++..+|+.+
T Consensus       186 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~-v~~~~~d~~~  242 (352)
T 1fp2_A          186 FDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENLSG------SNN-LTYVGGDMFT  242 (352)
T ss_dssp             HTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC------BTT-EEEEECCTTT
T ss_pred             cccCceEEEeCCCccHHHHHHHHHCCCCeEEEeeC-HHHHhhccc------CCC-cEEEeccccC
Confidence            456789999999999999999976  459999999 999988764      233 8999999853

>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*

Probab=96.46  E-value=0.0012  Score=64.64  Aligned_cols=55  Identities=24%  Similarity=0.150  Sum_probs=45.4

Q ss_pred             cCCCCeEEEecCCcchhHHHHhhcC--CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHH
Q 046527           93 FRPGETICDMFAGIGPFAIPAAQKG--CIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDARE  155 (380)
Q Consensus        93 i~~g~~VLDlfcGvG~fsl~aA~~g--~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e  155 (380)
                      +.++.+|||+|||+|.++..+++..  .+++++|+ |.+++.++++       .+++++.+|+.+
T Consensus       201 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~  257 (368)
T 3reo_A          201 FEGLTTIVDVGGGTGAVASMIVAKYPSINAINFDL-PHVIQDAPAF-------SGVEHLGGDMFD  257 (368)
T ss_dssp             TTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCC-------TTEEEEECCTTT
T ss_pred             ccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeh-HHHHHhhhhc-------CCCEEEecCCCC
Confidence            4457899999999999999999863  58999999 9888876532       359999999864

>3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A*

Probab=96.39  E-value=0.0041  Score=59.59  Aligned_cols=52  Identities=17%  Similarity=0.321  Sum_probs=44.1

Q ss_pred             eEEEecCCcchhHHHHhhcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHH
Q 046527           98 TICDMFAGIGPFAIPAAQKGC-IVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREF  156 (380)
Q Consensus        98 ~VLDlfcGvG~fsl~aA~~g~-~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~  156 (380)
                      +|+|||||.|.+++-+-+.|. -|+++|+++.|++..+.|.     ..  .++.+|+.++
T Consensus         2 kvidLFsG~GG~~~G~~~aG~~~v~a~e~d~~a~~ty~~N~-----~~--~~~~~DI~~i   54 (331)
T 3ubt_Y            2 NLISLFSGAGGLDLGFQKAGFRIICANEYDKSIWKTYESNH-----SA--KLIKGDISKI   54 (331)
T ss_dssp             EEEEESCTTCHHHHHHHHTTCEEEEEEECCTTTHHHHHHHC-----CS--EEEESCGGGC
T ss_pred             eEEEeCcCccHHHHHHHHCCCEEEEEEeCCHHHHHHHHHHC-----CC--CcccCChhhC
Confidence            699999999999999888887 6789999999999998884     22  5788998764

>2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens}

Probab=96.34  E-value=0.0035  Score=60.37  Aligned_cols=59  Identities=19%  Similarity=0.216  Sum_probs=48.1

Q ss_pred             CCCCeEEEecCCcchhHHHHhhcCCE---EEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHHHH
Q 046527           94 RPGETICDMFAGIGPFAIPAAQKGCI---VFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFIR  158 (380)
Q Consensus        94 ~~g~~VLDlfcGvG~fsl~aA~~g~~---V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~l~  158 (380)
                      ..+-+|+|||||.|.+++.+.+.|.+   |+++|+++.|++..+.|.     .+ ..++.+|+.++..
T Consensus        14 ~~~~~vidLFaG~GG~~~g~~~aG~~~~~v~a~E~d~~a~~ty~~N~-----~~-~~~~~~DI~~i~~   75 (295)
T 2qrv_A           14 RKPIRVLSLFDGIATGLLVLKDLGIQVDRYIASEVCEDSITVGMVRH-----QG-KIMYVGDVRSVTQ   75 (295)
T ss_dssp             CCCEEEEEETCTTTHHHHHHHHTTBCEEEEEEECCCHHHHHHHHHHT-----TT-CEEEECCGGGCCH
T ss_pred             CCCCEEEEeCcCccHHHHHHHHCCCccceEEEEECCHHHHHHHHHhC-----CC-CceeCCChHHccH
Confidence            45568999999999999999888863   699999999999988874     22 3578899987643

>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*

Probab=96.21  E-value=0.0021  Score=62.78  Aligned_cols=55  Identities=18%  Similarity=0.063  Sum_probs=45.7

Q ss_pred             cCCCCeEEEecCCcchhHHHHhhcC--CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHH
Q 046527           93 FRPGETICDMFAGIGPFAIPAAQKG--CIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDARE  155 (380)
Q Consensus        93 i~~g~~VLDlfcGvG~fsl~aA~~g--~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e  155 (380)
                      +.++.+|||+|||+|.++..+++.+  .+++++|+ |.+++.+++      .. +++++.+|+.+
T Consensus       207 ~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~------~~-~v~~~~~d~~~  263 (372)
T 1fp1_D          207 FEGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENAPP------LS-GIEHVGGDMFA  263 (372)
T ss_dssp             TTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC------CT-TEEEEECCTTT
T ss_pred             cCCCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeCh-HHHHHhhhh------cC-CCEEEeCCccc
Confidence            4567899999999999999999875  48999999 999987764      23 49999999864

>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*

Probab=96.19  E-value=0.0022  Score=62.86  Aligned_cols=55  Identities=20%  Similarity=0.105  Sum_probs=45.6

Q ss_pred             cCCCCeEEEecCCcchhHHHHhhc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHH
Q 046527           93 FRPGETICDMFAGIGPFAIPAAQK--GCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDARE  155 (380)
Q Consensus        93 i~~g~~VLDlfcGvG~fsl~aA~~--g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e  155 (380)
                      +.++.+|||+|||+|.++..+++.  +.+++++|+ |.+++.++.+       ++++++.+|+.+
T Consensus       199 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~  255 (364)
T 3p9c_A          199 FEGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDL-PHVISEAPQF-------PGVTHVGGDMFK  255 (364)
T ss_dssp             TTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCC-------TTEEEEECCTTT
T ss_pred             ccCCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecC-HHHHHhhhhc-------CCeEEEeCCcCC
Confidence            456789999999999999999986  358999999 8888776532       469999999864

>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}

Probab=96.19  E-value=0.012  Score=56.87  Aligned_cols=65  Identities=11%  Similarity=0.103  Sum_probs=53.5

Q ss_pred             cCCCCeEEEecCCcchhHHHHhhcC--CEEEEEeCCHHHHHHHHHHHH-HcC--C-CCcEEEEeccHHHHH
Q 046527           93 FRPGETICDMFAGIGPFAIPAAQKG--CIVFANDLNPDSVHYLKINAK-VNK--V-DNYVRAYNMDAREFI  157 (380)
Q Consensus        93 i~~g~~VLDlfcGvG~fsl~aA~~g--~~V~avDlnp~Aie~a~~Na~-lN~--l-~~ri~~~~~Da~e~l  157 (380)
                      ....++||-+|.|.|..+-.+++..  .+|+.||++|..++.+++-.. .++  + +.|++++.+|+++++
T Consensus        81 ~p~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l  151 (294)
T 3o4f_A           81 HGHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFV  151 (294)
T ss_dssp             SSCCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTT
T ss_pred             CCCCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHH
Confidence            3456799999999999999998863  499999999999999998753 232  2 358999999998875

>3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A

Probab=96.04  E-value=0.0081  Score=61.74  Aligned_cols=58  Identities=28%  Similarity=0.361  Sum_probs=47.1

Q ss_pred             CeEEEecCCcchhHHHHhhcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHHH
Q 046527           97 ETICDMFAGIGPFAIPAAQKGC-IVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFI  157 (380)
Q Consensus        97 ~~VLDlfcGvG~fsl~aA~~g~-~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~l  157 (380)
                      -+|+|||||+|++++-+.+.|. .|+++|+++.|++..+.|...  ..+ ..++++|+.++.
T Consensus        89 ~~viDLFaG~GGlslG~~~aG~~~v~avE~d~~A~~ty~~N~~~--~p~-~~~~~~DI~~i~  147 (482)
T 3me5_A           89 FRFIDLFAGIGGIRRGFESIGGQCVFTSEWNKHAVRTYKANHYC--DPA-THHFNEDIRDIT  147 (482)
T ss_dssp             EEEEEESCTTSHHHHHHHTTTEEEEEEECCCHHHHHHHHHHSCC--CTT-TCEEESCTHHHH
T ss_pred             ceEEEecCCccHHHHHHHHCCCEEEEEEeCCHHHHHHHHHhccc--CCC-cceeccchhhhh
Confidence            4899999999999999988876 589999999999998888521  112 457889998875

>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*

Probab=95.74  E-value=0.22  Score=49.59  Aligned_cols=67  Identities=10%  Similarity=0.082  Sum_probs=54.6

Q ss_pred             CCCeEEEecCCcchhHHHHhhcC-CEEEEEeCCHHHHHHHHHHHHH-c--CCC----CcEEEEeccHHHHHHHHh
Q 046527           95 PGETICDMFAGIGPFAIPAAQKG-CIVFANDLNPDSVHYLKINAKV-N--KVD----NYVRAYNMDAREFIRQLM  161 (380)
Q Consensus        95 ~g~~VLDlfcGvG~fsl~aA~~g-~~V~avDlnp~Aie~a~~Na~l-N--~l~----~ri~~~~~Da~e~l~~l~  161 (380)
                      +.++||-+|.|-|..+-.+++.. .+|+.||++|..++++++-... +  .++    ++++++.+|+++++++..
T Consensus       205 ~pkrVLIIGgGdG~~~revlkh~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~  279 (381)
T 3c6k_A          205 TGKDVLILGGGDGGILCEIVKLKPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYA  279 (381)
T ss_dssp             TTCEEEEEECTTCHHHHHHHTTCCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHH
T ss_pred             CCCeEEEECCCcHHHHHHHHhcCCceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhh
Confidence            46799999999999999988764 4899999999999999986421 1  121    468999999999998764

>3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica}

Probab=95.74  E-value=0.013  Score=57.20  Aligned_cols=54  Identities=15%  Similarity=0.165  Sum_probs=43.8

Q ss_pred             CCeEEEecCCcchhHHHHhhcC---CEE-EEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHH
Q 046527           96 GETICDMFAGIGPFAIPAAQKG---CIV-FANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREF  156 (380)
Q Consensus        96 g~~VLDlfcGvG~fsl~aA~~g---~~V-~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~  156 (380)
                      .-+|+|||||+|.+++.+...|   ..| +++|+++.|++..+.|..     +.  ++++|+.++
T Consensus        10 ~~~vidLFaG~GG~~~G~~~aG~~~~~v~~a~e~d~~a~~ty~~N~~-----~~--~~~~DI~~~   67 (327)
T 3qv2_A           10 QVNVIEFFSGIGGLRSSYERSSININATFIPFDINEIANKIYSKNFK-----EE--VQVKNLDSI   67 (327)
T ss_dssp             CEEEEEETCTTTHHHHHHHHSSCCCCEEEEEECCCHHHHHHHHHHHC-----CC--CBCCCTTTC
T ss_pred             CCEEEEECCChhHHHHHHHHcCCCceEEEEEEECCHHHHHHHHHHCC-----CC--cccCChhhc
Confidence            3489999999999999998887   256 799999999999999963     21  567777655

>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*

Probab=95.65  E-value=0.0045  Score=60.04  Aligned_cols=55  Identities=20%  Similarity=0.092  Sum_probs=45.0

Q ss_pred             cCCCCeEEEecCCcchhHHHHhhcC--CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHH
Q 046527           93 FRPGETICDMFAGIGPFAIPAAQKG--CIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDARE  155 (380)
Q Consensus        93 i~~g~~VLDlfcGvG~fsl~aA~~g--~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e  155 (380)
                      +.++.+|||+|||+|.++..+++..  .+++++|+ +.+++.+++      ..+ ++++.+|+.+
T Consensus       191 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~-v~~~~~d~~~  247 (358)
T 1zg3_A          191 FEGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQ-PQVVGNLTG------NEN-LNFVGGDMFK  247 (358)
T ss_dssp             HHTCSEEEEETCTTSHHHHHHHHHCTTSEEEEEEC-HHHHSSCCC------CSS-EEEEECCTTT
T ss_pred             ccCCCEEEEECCCcCHHHHHHHHHCCCCeEEEecc-HHHHhhccc------CCC-cEEEeCccCC
Confidence            3567899999999999999999874  48999999 888877653      344 9999999864

>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*

Probab=95.63  E-value=0.0066  Score=61.29  Aligned_cols=52  Identities=12%  Similarity=0.119  Sum_probs=41.6

Q ss_pred             CCCCeEEEecCC------cchhHHHHhhc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHH
Q 046527           94 RPGETICDMFAG------IGPFAIPAAQK---GCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDARE  155 (380)
Q Consensus        94 ~~g~~VLDlfcG------vG~fsl~aA~~---g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e  155 (380)
                      .++.+|||+|||      +|..++.+++.   +++|+|+|+++.+.         .. ..+++++++|+.+
T Consensus       215 ~~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~---------~~-~~rI~fv~GDa~d  275 (419)
T 3sso_A          215 NQQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH---------VD-ELRIRTIQGDQND  275 (419)
T ss_dssp             TSCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG---------GC-BTTEEEEECCTTC
T ss_pred             CCCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh---------hc-CCCcEEEEecccc
Confidence            356899999999      78888887764   56999999999972         12 2469999999976

>4ft4_B DNA (cytosine-5)-methyltransferase 1; chromodomain, BAH domain, DNA methyltransferase domain, H3K9 binding, methylation, transferase; HET: DNA MLY SAH; 2.70A {Zea mays} PDB: 4ft2_A* 4fsx_A*

Probab=95.54  E-value=0.02  Score=61.62  Aligned_cols=58  Identities=26%  Similarity=0.337  Sum_probs=47.1

Q ss_pred             CeEEEecCCcchhHHHHhhcC-------CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHHHHHH
Q 046527           97 ETICDMFAGIGPFAIPAAQKG-------CIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFIRQL  160 (380)
Q Consensus        97 ~~VLDlfcGvG~fsl~aA~~g-------~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~l~~l  160 (380)
                      -+|+|||||.|+|++-+.+.|       .-|+|+|+++.|++..+.|.     .+ ..+++.|+.++....
T Consensus       213 ltvIDLFAG~GGls~Gfe~AG~~~~~~f~vv~AvE~d~~A~~Ty~~Nh-----p~-~~~~~~di~~i~~~~  277 (784)
T 4ft4_B          213 ATLLDLYSGCGGMSTGLCLGAALSGLKLETRWAVDFNSFACQSLKYNH-----PQ-TEVRNEKADEFLALL  277 (784)
T ss_dssp             EEEEEETCTTSHHHHHHHHHHHHHTEEEEEEEEEESCHHHHHHHHHHC-----TT-SEEEESCHHHHHHHH
T ss_pred             CeEEEeCcCccHHHHHHHHhCcccCCceeEEEEEeCCHHHHHHHHHHC-----CC-CceecCcHHHhhhhh
Confidence            479999999999998776654       26899999999999988774     23 568999999887643

>4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda}

Probab=95.39  E-value=0.015  Score=56.78  Aligned_cols=54  Identities=24%  Similarity=0.336  Sum_probs=44.6

Q ss_pred             eEEEecCCcchhHHHHhhcCC---EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHHH
Q 046527           98 TICDMFAGIGPFAIPAAQKGC---IVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFI  157 (380)
Q Consensus        98 ~VLDlfcGvG~fsl~aA~~g~---~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~l  157 (380)
                      +|+|+|||+|.+++-+...|.   .|+++|+++.|++..+.|..     + ..++++|+.++.
T Consensus         5 ~~idLFaG~GG~~~G~~~aG~~~~~v~a~e~d~~a~~ty~~N~~-----~-~~~~~~DI~~~~   61 (333)
T 4h0n_A            5 KILELYSGIGGMHCAWKESGLDGEIVAAVDINTVANSVYKHNFP-----E-TNLLNRNIQQLT   61 (333)
T ss_dssp             EEEEETCTTTHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCT-----T-SCEECCCGGGCC
T ss_pred             EEEEECcCccHHHHHHHHcCCCceEEEEEeCCHHHHHHHHHhCC-----C-CceeccccccCC
Confidence            799999999999999888774   58899999999999998852     2 346788887663

>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*

Probab=95.24  E-value=0.013  Score=58.42  Aligned_cols=56  Identities=16%  Similarity=0.139  Sum_probs=43.3

Q ss_pred             ccCCCCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHH
Q 046527           92 QFRPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDARE  155 (380)
Q Consensus        92 ~i~~g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e  155 (380)
                      .+.+|.+|||+||..|.++..++++|++|+|||..+-.-     .+  ... .+|+++++|+.+
T Consensus       208 ~l~~G~~vlDLGAaPGGWT~~l~~rg~~V~aVD~~~l~~-----~l--~~~-~~V~~~~~d~~~  263 (375)
T 4auk_A          208 RLANGMWAVDLGACPGGWTYQLVKRNMWVYSVDNGPMAQ-----SL--MDT-GQVTWLREDGFK  263 (375)
T ss_dssp             HSCTTCEEEEETCTTCHHHHHHHHTTCEEEEECSSCCCH-----HH--HTT-TCEEEECSCTTT
T ss_pred             cCCCCCEEEEeCcCCCHHHHHHHHCCCEEEEEEhhhcCh-----hh--ccC-CCeEEEeCcccc
Confidence            367899999999999999999999999999999765221     11  122 348888888653

>3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A*

Probab=94.67  E-value=0.059  Score=59.96  Aligned_cols=56  Identities=16%  Similarity=0.318  Sum_probs=47.5

Q ss_pred             eEEEecCCcchhHHHHhhcCC--EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHHHHH
Q 046527           98 TICDMFAGIGPFAIPAAQKGC--IVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFIRQ  159 (380)
Q Consensus        98 ~VLDlfcGvG~fsl~aA~~g~--~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~l~~  159 (380)
                      +++|||||.|++++-+.+.|.  .|+|+|+++.|++..+.|.     .+ ..++.+|+.++...
T Consensus       542 ~~iDLFaG~GGlslGl~~AG~~~vv~avEid~~A~~ty~~N~-----p~-~~~~~~DI~~l~~~  599 (1002)
T 3swr_A          542 RTLDVFSGCGGLSEGFHQAGISDTLWAIEMWDPAAQAFRLNN-----PG-STVFTEDCNILLKL  599 (1002)
T ss_dssp             EEEEESCTTSHHHHHHHHHTSEEEEEEECSSHHHHHHHHHHC-----TT-SEEECSCHHHHHHH
T ss_pred             eEEEeccCccHHHHHHHHCCCCceEEEEECCHHHHHHHHHhC-----CC-CccccccHHHHhhh
Confidence            799999999999999988886  5889999999999888773     23 56889999887654

>2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus}

Probab=94.02  E-value=0.12  Score=49.26  Aligned_cols=65  Identities=12%  Similarity=-0.062  Sum_probs=52.6

Q ss_pred             CCCeEEEecCCcchhHHHHhhc-------CCEEEEEeCCH--------------------------HHHHHHHHHHHHcC
Q 046527           95 PGETICDMFAGIGPFAIPAAQK-------GCIVFANDLNP--------------------------DSVHYLKINAKVNK  141 (380)
Q Consensus        95 ~g~~VLDlfcGvG~fsl~aA~~-------g~~V~avDlnp--------------------------~Aie~a~~Na~lN~  141 (380)
                      ....||++|+..|..++.+|..       +.+|+++|...                          ..++.+++|++..|
T Consensus       106 ~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~g  185 (282)
T 2wk1_A          106 VPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNYD  185 (282)
T ss_dssp             CCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHTT
T ss_pred             CCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHcC
Confidence            3459999999999999887642       46899999642                          14778999999999


Q ss_pred             CC-CcEEEEeccHHHHHHH
Q 046527          142 VD-NYVRAYNMDAREFIRQ  159 (380)
Q Consensus       142 l~-~ri~~~~~Da~e~l~~  159 (380)
                      +. ++|+++.||+.+.+.+
T Consensus       186 l~~~~I~li~Gda~etL~~  204 (282)
T 2wk1_A          186 LLDEQVRFLPGWFKDTLPT  204 (282)
T ss_dssp             CCSTTEEEEESCHHHHSTT
T ss_pred             CCcCceEEEEeCHHHHHhh
Confidence            94 7899999999887643

>3av4_A DNA (cytosine-5)-methyltransferase 1; CXXC-type zinc finger/C5-methyltransferase family; HET: DNA; 2.75A {Mus musculus} PDB: 3av5_A* 3av6_A*

Probab=93.65  E-value=0.13  Score=58.82  Aligned_cols=59  Identities=15%  Similarity=0.300  Sum_probs=49.1

Q ss_pred             CCeEEEecCCcchhHHHHhhcCC--EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHHHHHH
Q 046527           96 GETICDMFAGIGPFAIPAAQKGC--IVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFIRQL  160 (380)
Q Consensus        96 g~~VLDlfcGvG~fsl~aA~~g~--~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~l~~l  160 (380)
                      .-+++|||||.|++++-+-+.|.  .|+++|+++.|++..+.|.     .+ ..++++|+.+++...
T Consensus       851 ~l~viDLFsG~GGlslGfe~AG~~~vv~avEid~~A~~ty~~N~-----p~-~~~~~~DI~~l~~~~  911 (1330)
T 3av4_A          851 KLRTLDVFSGCGGLSEGFHQAGISETLWAIEMWDPAAQAFRLNN-----PG-TTVFTEDCNVLLKLV  911 (1330)
T ss_dssp             CEEEEEETCTTSHHHHHHHHTTSEEEEEEECCSHHHHHHHHHHC-----TT-SEEECSCHHHHHHHH
T ss_pred             CceEEecccCccHHHHHHHHCCCCceEEEEECCHHHHHHHHHhC-----CC-CcEeeccHHHHhHhh
Confidence            34799999999999999988885  5889999999999988873     23 467899999887553

>4dkj_A Cytosine-specific methyltransferase; CG-specificity, DNA intercalation, CPG sequence, cytosine C5 methylation; HET: DNA C37 5CM SAH; 2.15A {Mycoplasma penetrans}

Probab=92.87  E-value=0.088  Score=52.77  Aligned_cols=42  Identities=14%  Similarity=0.022  Sum_probs=36.7

Q ss_pred             CeEEEecCCcchhHHHHhhcCC---E----EEEEeCCHHHHHHHHHHHH
Q 046527           97 ETICDMFAGIGPFAIPAAQKGC---I----VFANDLNPDSVHYLKINAK  138 (380)
Q Consensus        97 ~~VLDlfcGvG~fsl~aA~~g~---~----V~avDlnp~Aie~a~~Na~  138 (380)
                      -+|+|+|||+|++++.+-+.|.   -    |.++|+++.|++..+.|..
T Consensus        11 lrvldLFsGiGG~~~Gl~~aG~~~~~~~~~v~avEid~~A~~ty~~n~~   59 (403)
T 4dkj_A           11 IKVFEAFAGIGSQFKALKNIARSKNWEIQHSGMVEWFVDAIVSYVAIHS   59 (403)
T ss_dssp             EEEEEETCTTCHHHHHHHHHHHHHTEEEEEEEEECCBHHHHHHHHHHHC
T ss_pred             ceEEEEecCcCHHHHHHHHhCCccccceeeEEEEecCHHHHHHHHHHcC
Confidence            3899999999999998887662   4    8999999999999999874

>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus}

Probab=91.35  E-value=0.26  Score=47.79  Aligned_cols=50  Identities=16%  Similarity=0.090  Sum_probs=36.8

Q ss_pred             cChHHHHHHHHH--hccCCCCeEEEecCCcchhHHHHhhc-CC-EEEEEeCCHH
Q 046527           79 NSRLEHEHLRII--SQFRPGETICDMFAGIGPFAIPAAQK-GC-IVFANDLNPD  128 (380)
Q Consensus        79 n~rl~tE~~r~i--~~i~~g~~VLDlfcGvG~fsl~aA~~-g~-~V~avDlnp~  128 (380)
                      .+|-......+.  ..+.++.+||||||+.|.|+..++.. |+ .|+|+|+-..
T Consensus        76 ~SR~~~KL~ei~~~~~l~~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~  129 (321)
T 3lkz_A           76 VSRGTAKLRWLVERRFLEPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGP  129 (321)
T ss_dssp             SSTHHHHHHHHHHTTSCCCCEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCST
T ss_pred             cchHHHHHHHHHHhcCCCCCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCC
Confidence            455444443333  34678889999999999999977764 54 7999999765

>3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A*

Probab=91.17  E-value=0.31  Score=45.98  Aligned_cols=73  Identities=14%  Similarity=0.015  Sum_probs=46.4

Q ss_pred             cChHHHHHHHHHh--ccCCCCeEEEecCCcchhHHHHhhc-CC-EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEec-cH
Q 046527           79 NSRLEHEHLRIIS--QFRPGETICDMFAGIGPFAIPAAQK-GC-IVFANDLNPDSVHYLKINAKVNKVDNYVRAYNM-DA  153 (380)
Q Consensus        79 n~rl~tE~~r~i~--~i~~g~~VLDlfcGvG~fsl~aA~~-g~-~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~-Da  153 (380)
                      .+|.......+..  .+.++.+|+||||+.|.++..++.. |+ +|+|+|+-+.--+.-+ .++..|+. -+++.++ |+
T Consensus        60 rSRa~~KL~ei~ek~~l~~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~ghe~P~-~~~s~gwn-~v~fk~gvDv  137 (267)
T 3p8z_A           60 VSRGSAKLQWFVERNMVIPEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGHEEPV-PMSTYGWN-IVKLMSGKDV  137 (267)
T ss_dssp             SSTHHHHHHHHHHTTSSCCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCC-CCCCTTTT-SEEEECSCCG
T ss_pred             cchHHHHHHHHHHhcCCCCCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCccCcc-hhhhcCcC-ceEEEeccce
Confidence            4554444443332  4678999999999999999977765 54 8999999764331000 00112333 3888887 77

>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}

Probab=90.57  E-value=0.37  Score=46.10  Aligned_cols=50  Identities=22%  Similarity=0.178  Sum_probs=36.2

Q ss_pred             cChHHHHHHHHHh--ccCCCCeEEEecCCcchhHHHHhhc-CC-EEEEEeCCHH
Q 046527           79 NSRLEHEHLRIIS--QFRPGETICDMFAGIGPFAIPAAQK-GC-IVFANDLNPD  128 (380)
Q Consensus        79 n~rl~tE~~r~i~--~i~~g~~VLDlfcGvG~fsl~aA~~-g~-~V~avDlnp~  128 (380)
                      .+|.+...+.+..  .+.++.+|||||||.|.|+..++.. ++ .|+++|+...
T Consensus        72 rSRAAfKL~ei~eK~~Lk~~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d  125 (282)
T 3gcz_A           72 VSRGSAKLRWMEERGYVKPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQ  125 (282)
T ss_dssp             SSTHHHHHHHHHHTTSCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCT
T ss_pred             ecHHHHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccC
Confidence            4554444433332  4578889999999999999998864 44 7899998764

>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*

Probab=90.05  E-value=0.41  Score=45.68  Aligned_cols=50  Identities=18%  Similarity=0.026  Sum_probs=36.3

Q ss_pred             ecChHHHHHHHHH--hccCCCCeEEEecCCcchhHHHHhhc-CC-EEEEEeCCH
Q 046527           78 WNSRLEHEHLRII--SQFRPGETICDMFAGIGPFAIPAAQK-GC-IVFANDLNP  127 (380)
Q Consensus        78 ~n~rl~tE~~r~i--~~i~~g~~VLDlfcGvG~fsl~aA~~-g~-~V~avDlnp  127 (380)
                      +.+|.+.....+.  ..+.++.+|||||||.|.|+..++.. ++ .|.|+|+.-
T Consensus        55 YrSRaA~KL~ei~ek~~l~~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGv  108 (277)
T 3evf_A           55 AVSRGTAKLRWFHERGYVKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGR  108 (277)
T ss_dssp             CSSTHHHHHHHHHHTTSSCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCC
T ss_pred             ccccHHHHHHHHHHhCCCCCCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEec
Confidence            3556555444433  34678889999999999999988875 44 788888763

>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A

Probab=89.44  E-value=0.068  Score=45.72  Aligned_cols=46  Identities=9%  Similarity=0.012  Sum_probs=37.1

Q ss_pred             ccCCCCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHH
Q 046527           92 QFRPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREF  156 (380)
Q Consensus        92 ~i~~g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~  156 (380)
                      .+.+|++|||++||.              +++|+++.+++.|+++...     .+++.++|+.+.
T Consensus         9 g~~~g~~vL~~~~g~--------------v~vD~s~~ml~~a~~~~~~-----~~~~~~~d~~~~   54 (176)
T 2ld4_A            9 GISAGQFVAVVWDKS--------------SPVEALKGLVDKLQALTGN-----EGRVSVENIKQL   54 (176)
T ss_dssp             TCCTTSEEEEEECTT--------------SCHHHHHHHHHHHHHHTTT-----TSEEEEEEGGGG
T ss_pred             CCCCCCEEEEecCCc--------------eeeeCCHHHHHHHHHhccc-----CcEEEEechhcC
Confidence            367899999999996              2399999999999987532     278899998753

>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*

Probab=86.77  E-value=0.7  Score=44.57  Aligned_cols=37  Identities=22%  Similarity=0.179  Sum_probs=31.3

Q ss_pred             hccCCCCeEEEecCCcchhHHHHhhc-CC-EEEEEeCCH
Q 046527           91 SQFRPGETICDMFAGIGPFAIPAAQK-GC-IVFANDLNP  127 (380)
Q Consensus        91 ~~i~~g~~VLDlfcGvG~fsl~aA~~-g~-~V~avDlnp  127 (380)
                      ..+.+|.+||||||+.|.|+-.+++. +. .|+|+|+..
T Consensus        77 ~l~~~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~  115 (300)
T 3eld_A           77 GYLRITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGI  115 (300)
T ss_dssp             TSCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCC
T ss_pred             CCCCCCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEecc
Confidence            45678999999999999999999975 44 789999864

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}

Probab=85.92  E-value=0.87  Score=44.50  Aligned_cols=44  Identities=30%  Similarity=0.454  Sum_probs=36.8

Q ss_pred             hccCCCCeEEEecCCc-chhHHHHhh-cCC-EEEEEeCCHHHHHHHH
Q 046527           91 SQFRPGETICDMFAGI-GPFAIPAAQ-KGC-IVFANDLNPDSVHYLK  134 (380)
Q Consensus        91 ~~i~~g~~VLDlfcGv-G~fsl~aA~-~g~-~V~avDlnp~Aie~a~  134 (380)
                      ..+.+|++||..|||. |.+++.+|+ .|+ +|+++|.+++-++.++
T Consensus       181 ~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~  227 (398)
T 2dph_A          181 AGVKPGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPERLKLLS  227 (398)
T ss_dssp             TTCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHH
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHH
Confidence            4578999999999874 788888886 477 9999999999888875

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=84.44  E-value=1.6  Score=41.53  Aligned_cols=45  Identities=24%  Similarity=0.340  Sum_probs=37.4

Q ss_pred             hccCCCCeEEEecCC-cchhHHHHhhc-CCEEEEEeCCHHHHHHHHH
Q 046527           91 SQFRPGETICDMFAG-IGPFAIPAAQK-GCIVFANDLNPDSVHYLKI  135 (380)
Q Consensus        91 ~~i~~g~~VLDlfcG-vG~fsl~aA~~-g~~V~avDlnp~Aie~a~~  135 (380)
                      ..+.+|++||-.||| +|.+++.+|+. |++|+++|.+++-.+.+++
T Consensus       162 ~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~  208 (340)
T 3s2e_A          162 TDTRPGQWVVISGIGGLGHVAVQYARAMGLRVAAVDIDDAKLNLARR  208 (340)
T ss_dssp             TTCCTTSEEEEECCSTTHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHH
Confidence            357889999999886 58888888874 7899999999999888764

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=82.38  E-value=1.8  Score=41.62  Aligned_cols=45  Identities=27%  Similarity=0.327  Sum_probs=36.8

Q ss_pred             hccCCCCeEEEecCCc-chhHHHHhhc-CC-EEEEEeCCHHHHHHHHH
Q 046527           91 SQFRPGETICDMFAGI-GPFAIPAAQK-GC-IVFANDLNPDSVHYLKI  135 (380)
Q Consensus        91 ~~i~~g~~VLDlfcGv-G~fsl~aA~~-g~-~V~avDlnp~Aie~a~~  135 (380)
                      ..+.+|++||-.|||. |.+++.+|+. |+ +|+++|.+++-.+.+++
T Consensus       186 ~~~~~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a~~  233 (371)
T 1f8f_A          186 LKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQ  233 (371)
T ss_dssp             TCCCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHH
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH
Confidence            4578899999998873 7777777764 77 79999999999988864

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1

Probab=82.09  E-value=1.9  Score=41.92  Aligned_cols=45  Identities=33%  Similarity=0.471  Sum_probs=36.7

Q ss_pred             hccCCCCeEEEecCC-cchhHHHHhhc-CC-EEEEEeCCHHHHHHHHH
Q 046527           91 SQFRPGETICDMFAG-IGPFAIPAAQK-GC-IVFANDLNPDSVHYLKI  135 (380)
Q Consensus        91 ~~i~~g~~VLDlfcG-vG~fsl~aA~~-g~-~V~avDlnp~Aie~a~~  135 (380)
                      ..+.+|++||-.||| +|.+++.+|+. |+ +|+++|.+++-++.+++
T Consensus       181 ~~~~~g~~VlV~GaG~vG~~aiqlAk~~Ga~~Vi~~~~~~~~~~~a~~  228 (398)
T 1kol_A          181 AGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKA  228 (398)
T ss_dssp             TTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH
T ss_pred             cCCCCCCEEEEECCcHHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHH
Confidence            467899999999876 47777777764 77 89999999999888864

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=81.68  E-value=2.1  Score=40.94  Aligned_cols=45  Identities=24%  Similarity=0.265  Sum_probs=36.6

Q ss_pred             hccCCCCeEEEecCC-cchhHHHHhh-cCC-EEEEEeCCHHHHHHHHH
Q 046527           91 SQFRPGETICDMFAG-IGPFAIPAAQ-KGC-IVFANDLNPDSVHYLKI  135 (380)
Q Consensus        91 ~~i~~g~~VLDlfcG-vG~fsl~aA~-~g~-~V~avDlnp~Aie~a~~  135 (380)
                      ..+.+|++||-.|+| +|.+++.+|+ .|+ +|+++|.+++-.+.+++
T Consensus       167 ~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~  214 (356)
T 1pl8_A          167 GGVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKE  214 (356)
T ss_dssp             HTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH
Confidence            467899999999887 4777777776 477 99999999998888753

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}

Probab=80.04  E-value=2.2  Score=40.82  Aligned_cols=46  Identities=22%  Similarity=0.346  Sum_probs=37.0

Q ss_pred             hccCCCCeEEEecCC-cchhHHHHhhc-CCE-EEEEeCCHHHHHHHHHH
Q 046527           91 SQFRPGETICDMFAG-IGPFAIPAAQK-GCI-VFANDLNPDSVHYLKIN  136 (380)
Q Consensus        91 ~~i~~g~~VLDlfcG-vG~fsl~aA~~-g~~-V~avDlnp~Aie~a~~N  136 (380)
                      ..+.+|++||-.|+| +|.+++.+|+. |++ |+++|.+++-.+.+++-
T Consensus       175 ~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l  223 (363)
T 3m6i_A          175 AGVRLGDPVLICGAGPIGLITMLCAKAAGACPLVITDIDEGRLKFAKEI  223 (363)
T ss_dssp             HTCCTTCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHH
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh
Confidence            467899999998876 47777777764 675 99999999999998864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	380
d2frna1	260	c.66.1.47 (A:19-278) Hypothetical protein PH0793 {	4e-33
d2frna1	260	c.66.1.47 (A:19-278) Hypothetical protein PH0793 {	3e-11
d2as0a2	324	c.66.1.51 (A:73-396) Hypothetical protein PH1915,	7e-11
d1wxxa2	318	c.66.1.51 (A:65-382) Hypothetical protein TTHA1280	7e-11
d1l3ia_	186	c.66.1.22 (A:) Precorrin-6Y methyltransferase (Cbi	1e-06
d2dula1	375	c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tR	1e-05
d2b78a2	317	c.66.1.51 (A:69-385) Hypothetical protein SMu776,	2e-05
d1g8sa_	230	c.66.1.3 (A:) Fibrillarin homologue {Archaeon Meth	2e-04
d1nw3a_	328	c.66.1.31 (A:) Catalytic, N-terminal domain of his	0.002
d1g6q1_	328	c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Ba	0.003

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} Length = 260

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

 Score =  122 bits (307), Expect = 4e-33
 Identities = 55/160 (34%), Positives = 88/160 (55%), Gaps = 5/160 (3%)

Query: 1   HIAHLNIHDELLPFKDVIAKVIYDKNYPRIKTVVNKVGTIANEFRVPEFEILAGEDNMVT 60
            +  L +  EL P+K  IA+V  +     +KTV+ K G I  E R P++E+L G D + T
Sbjct: 17  DVLLLPLRPELEPYKHRIAEVYAEV--LGVKTVLRK-GHIHGETRKPDYELLYGSDTV-T 72

Query: 61  EVKQYGATFKLDYSLVYWNSRLEHEHLRIISQFRPGETICDMFAGIGPFAIPAAQKGCI- 119
              + G  +KLD + + ++     E +R+    +P E + DMFAGIG  ++P A  G   
Sbjct: 73  VHVENGIKYKLDVAKIMFSPANVKERVRMAKVAKPDELVVDMFAGIGHLSLPIAVYGKAK 132

Query: 120 VFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFIRQ 159
           V A + +P +  +L  N  +NKV++ + AYNMD R+F  +
Sbjct: 133 VIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGE 172

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} Length = 260

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 60.9 bits (147), Expect = 3e-11
 Identities = 12/95 (12%), Positives = 25/95 (26%), Gaps = 9/95 (9%)

Query: 269 WEHVDHIIMNLPASALKFLDAFRGLIQRQYWKGSLPWIHCYCFIRANETEELIISEAESA 328
               D I+M       +F+     + +          IH +  +             +  
Sbjct: 172 ENIADRILMGYVVRTHEFIPKALSIAKDG------AIIHYHNTVPEKLMPREPFETFKRI 225

Query: 329 LNACIQDPI---FHKVRNVAPNKAMFCLSFRLPEA 360
                 D       K++  AP      L  R+ ++
Sbjct: 226 TKEYGYDVEKLNELKIKRYAPGVWHVVLDLRVFKS 260

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 324

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score = 60.3 bits (145), Expect = 7e-11
 Identities = 33/136 (24%), Positives = 58/136 (42%), Gaps = 3/136 (2%)

Query: 28  PRIKTVVNKVGTIANEFRVPEFEILAGEDNMVTEVKQYGATFKLDYSLVYWNSRLEHEHL 87
                  N   +   E       +L G++   T +++  A F +D         L+    
Sbjct: 76  IETVFEKNTGRSRRREGLPEIERVLLGKEKYRTIIQEGRAKFIVDMRGQKTGFFLDQREN 135

Query: 88  RIISQF--RPGETICDMFAGIGPFAIPAAQKGC-IVFANDLNPDSVHYLKINAKVNKVDN 144
           R+  +   +PG+ + D+F   G FAI AA  G   V   D +P ++   K NAK+N V++
Sbjct: 136 RLALEKWVQPGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVED 195

Query: 145 YVRAYNMDAREFIRQL 160
            ++     A E + +L
Sbjct: 196 RMKFIVGSAFEEMEKL 211

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} Length = 318

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

 Score = 60.3 bits (145), Expect = 7e-11
 Identities = 30/150 (20%), Positives = 61/150 (40%), Gaps = 4/150 (2%)

Query: 13  PFKDVIAKVIYDKNYPRIKTVV--NKVGTIANEFRVPEFEILAGEDNMVTEVKQYGATFK 70
              + +   + +   P +++V+  N   T   E        L GE     +V++    + 
Sbjct: 60  HAWEGLLPQVAEALRPHVQSVLAKNDARTRELEGLPLYVRPLLGEVPERVQVQEGRVRYL 119

Query: 71  LDYSLVYWNSR-LEHEHLRIISQFRPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDS 129
           +D          L+    R+  +   GE   D+F+  G FA+  A     V A D + ++
Sbjct: 120 VDLRAGQKTGAYLDQRENRLYMERFRGERALDVFSYAGGFALHLALGFREVVAVDSSAEA 179

Query: 130 VHYLKINAKVNKVDNYVRAYNMDAREFIRQ 159
           +   + NA++N + N  R    +A + +R+
Sbjct: 180 LRRAEENARLNGLGNV-RVLEANAFDLLRR 208

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 186

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 46.4 bits (109), Expect = 1e-06
 Identities = 14/76 (18%), Positives = 32/76 (42%)

Query: 94  RPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDA 153
              +   D+  G G   +  A +   V+A D NP+++   ++N + + + + V     DA
Sbjct: 32  GKNDVAVDVGCGTGGVTLELAGRVRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDA 91

Query: 154 REFIRQLMTAPAGEIN 169
            E + ++       + 
Sbjct: 92  PEALCKIPDIDIAVVG 107

>d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]} Length = 375

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TRM1-like
domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 44.6 bits (105), Expect = 1e-05
 Identities = 18/113 (15%), Positives = 42/113 (37%), Gaps = 10/113 (8%)

Query: 59  VTEVKQYGATF------KLDYSLVYWN--SRLEHEHLRIISQFRPGETICDMFAGIGPFA 110
           + EV++  A         +  S V++N    L  + + ++      + + D  +  G   
Sbjct: 1   LIEVQEGKAKILIPKAESIYDSPVFYNPRMALNRDIVVVLLNILNPKIVLDALSATGIRG 60

Query: 111 IPAAQ--KGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFIRQLM 161
           I  A       V+ ND++ D+   +K N  +N       +      +  + ++
Sbjct: 61  IRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIV 113

>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]} Length = 317

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein SMu776, middle and C-terminal domains
species: Streptococcus mutans [TaxId: 1309]

 Score = 43.7 bits (102), Expect = 2e-05
 Identities = 23/154 (14%), Positives = 50/154 (32%), Gaps = 6/154 (3%)

Query: 13  PFKDVIAKVIYDKNYPRIKTVVNKVGTIANEFRVPEFEILAGED-NMVTEVKQYGATFKL 71
            F   I   I           +     I  +        L G++      + + G ++ +
Sbjct: 58  SFVYQIRDEIVAAFRQVYPNFLGAYEKIRFKGIDNVSAHLYGQEAPEQFLILENGISYNV 117

Query: 72  ---DYSLVYWNSRLEHEHLRIISQFRPGETICDMFAGIGPFAIPAAQKGC-IVFANDLNP 127
              D  +             +I+    G+T+ ++F+    F++ AA  G     + DL  
Sbjct: 118 FLNDGLMTGIFLDQRQVRNELINGSAAGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAK 177

Query: 128 DSVHYLKINAKVNKVDNY-VRAYNMDAREFIRQL 160
            S      + + N +D    +   MD  ++ +  
Sbjct: 178 RSRALSLAHFEANHLDMANHQLVVMDVFDYFKYA 211

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 40.1 bits (93), Expect = 2e-04
 Identities = 17/106 (16%), Positives = 30/106 (28%), Gaps = 9/106 (8%)

Query: 56  DNMVTEVKQYGATFKLDYSLVY--WN---SRLEHEHLRIISQF--RPGETICDMFAGIGP 108
            ++V   K Y           Y  WN   S+L    ++ +     +    I  + A  G 
Sbjct: 28  KSIVKGKKVYDEKIIKIGDEEYRIWNPNKSKLAAAIIKGLKVMPIKRDSKILYLGASAGT 87

Query: 109 FAIPAAQKG--CIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMD 152
                A      IV+A +  P  +  L       +    +      
Sbjct: 88  TPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDANK 133

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} Length = 328

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.1 bits (85), Expect = 0.002
 Identities = 8/85 (9%), Positives = 22/85 (25%), Gaps = 3/85 (3%)

Query: 94  RPGETICDMFAGIGPFAIPAAQKGCI--VFANDLNPDSVHYLKINAKVNKVDNYVRAYNM 151
              +   D+ +G+G   +  A        +  +       Y +   +  +          
Sbjct: 150 TDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKH 209

Query: 152 DAREFIRQ-LMTAPAGEINSESDVF 175
                 R   ++    E  + + V 
Sbjct: 210 AEYTLERGDFLSEEWRERIANTSVI 234

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 328

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.8 bits (84), Expect = 0.003
 Identities = 10/101 (9%), Positives = 28/101 (27%)

Query: 95  PGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAR 154
             + + D+  G G  ++ AA+ G            +   K   ++N   + +        
Sbjct: 38  KDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSSIIEMAKELVELNGFSDKITLLRGKLE 97

Query: 155 EFIRQLMTAPAGEINSESDVFNLKACGNSGIQANKKTGIEN 195
           +                      ++  ++ + A     +E 
Sbjct: 98  DVHLPFPKVDIIISEWMGYFLLYESMMDTVLYARDHYLVEG 138

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	380
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	100.0
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	99.84
d2b78a2	317	Hypothetical protein SMu776, middle and C-terminal	99.81
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	99.8
d2igta1	309	Putative methyltransferase Atu0340 {Agrobacterium	99.7
d1uwva2	358	rRNA (Uracil-5-)-methyltransferase RumA, catalytic	99.64
d2esra1	152	Putative methyltransferase SPy1538 {Streptococcus	99.48
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	99.44
d2fhpa1	182	Putative methylase EF2452 {Enterococcus faecalis [	99.36
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	99.34
d2fpoa1	183	Methylase YhhF {Escherichia coli [TaxId: 562]}	99.3
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	99.28
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	99.27
d2b3ta1	274	N5-glutamine methyltransferase, HemK {Escherichia	99.21
d2dula1	375	N(2),N(2)-dimethylguanosine tRNA methyltransferase	99.21
d1wy7a1	201	Hypothetical protein PH1948 {Archaeon Pyrococcus h	99.2
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	99.1
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	99.07
d2ifta1	183	Putative methylase HI0767 {Haemophilus influenzae	99.07
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	99.03
d1nv8a_	271	N5-glutamine methyltransferase, HemK {Thermotoga m	99.01
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	98.97
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	98.95
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	98.94
d2h00a1	250	Methyltransferase 10 domain containing protein MET	98.9
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	98.89
d2fcaa1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	98.84
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	98.8
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	98.8
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	98.79
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	98.78
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	98.76
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	98.67
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	98.66
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	98.65
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	98.65
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	98.65
d1yzha1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep	98.64
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	98.62
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	98.61
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	98.61
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	98.59
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	98.57
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	98.56
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	98.54
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	98.52
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	98.52
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	98.51
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	98.48
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	98.42
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	98.4
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	98.35
d2gh1a1	281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	98.32
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	98.32
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	98.3
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	98.26
d1qama_	235	rRNA adenine dimethylase {Bacillus subtilis, Ermc'	98.24
d2cl5a1	214	Catechol O-methyltransferase, COMT {Rat (Rattus no	98.17
d1m6ya2	192	TM0872, methyltransferase domain {Thermotoga marit	98.14
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	98.11
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	98.11
d1zq9a1	278	Probable dimethyladenosine transferase {Human (Hom	98.1
d2f8la1	328	Hypothetical protein Lmo1582 {Listeria monocytogen	98.1
d2avda1	219	COMT domain-containing protein 1, COMTD1 {Human (H	98.09
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	98.02
d1tw3a2	253	Carminomycin 4-O-methyltransferase {Streptomyces p	98.01
d2a14a1	257	Indolethylamine N-methyltransferase, INMT {Human (	97.94
d1qyra_	252	High level kasugamycin resistance protein KsgA {Es	97.94
d1vlma_	208	Possible histamine N-methyltransferase TM1293 {The	97.92
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	97.91
d1xtpa_	254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	97.9
d1susa1	227	Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag	97.9
d1qzza2	256	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	97.8
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	97.79
d1jqea_	280	Histamine methyltransferase {Human (Homo sapiens)	97.77
d2okca1	425	Type I restriction enzyme StySJI M protein {Bacter	97.7
d1yuba_	245	rRNA adenine dimethylase {Streptococcus pneumoniae	97.69
d2oyra1	250	Hypothetical protein YhiQ {Shigella flexneri [TaxI	97.59
d1mjfa_	276	Putative spermidine synthetase PF0127 (SpeE) {Arch	97.58
d1g60a_	256	Methyltransferase mboII {Moraxella bovis [TaxId: 4	97.45
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	97.41
d1o9ga_	249	rRNA methyltransferase AviRa {Streptomyces viridoc	97.38
d2b9ea1	293	NOL1R {Human (Homo sapiens) [TaxId: 9606]}	97.34
d1eg2a_	279	m.RsrI N6 adenosine-specific DNA methyltransferase	97.32
d1wg8a2	182	TM0872, methyltransferase domain {Thermus thermoph	97.32
d2ar0a1	524	M.EcoKI {Escherichia coli [TaxId: 562]}	97.31
d1booa_	320	m.PvuII N4 cytosine-specific DNA methyltransferase	97.3
d2g72a1	263	Phenylethanolamine N-methyltransferase, PNMTase {H	97.19
d1inla_	295	Spermidine synthase {Thermotoga maritima [TaxId: 2	97.16
d1i4wa_	322	Transcription factor sc-mtTFB {Baker's yeast (Sacc	97.1
d1xj5a_	290	Spermidine synthase {Thale cress (Arabidopsis thal	97.01
d2ih2a1	223	DNA methylase TaqI, N-terminal domain {Thermus aqu	96.97
d1sqga2	284	Ribosomal RNA small subunit methyltransferase B, R	96.97
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	96.9
d2b2ca1	312	Spermidine synthase {Caenorhabditis elegans [TaxId	96.87
d1jsxa_	207	Glucose-inhibited division protein B (GidB) {Esche	96.71
d2o07a1	285	Spermidine synthase {Human (Homo sapiens) [TaxId:	96.66
d1ixka_	313	Hypothetical methyltransferase PH1374 {Archaeon Py	96.53
d2c7pa1	327	DNA methylase HhaI {Haemophilus haemolyticus [TaxI	96.43
d1dcta_	324	DNA methylase HaeIII {Haemophilus aegyptius [TaxId	96.19
d1xdza_	239	Glucose-inhibited division protein B (GidB) {Bacil	95.65
d2py6a1	395	Methyltransferase FkbM {Methylobacillus flagellatu	95.6
d1g55a_	343	DNMT2 {Human (Homo sapiens) [TaxId: 9606]}	95.41
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	94.05
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	94.04
d1fp2a2	244	Isoflavone O-methyltransferase {Alfalfa (Medicago	93.4
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	93.09
d1fp1d2	244	Chalcone O-methyltransferase {Alfalfa (Medicago sa	93.09
d1ej0a_	180	RNA methyltransferase FtsJ {Escherichia coli [TaxI	92.99
d1af7a2	193	Chemotaxis receptor methyltransferase CheR, C-term	92.94
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	92.15
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	91.16
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	90.75
d1kyza2	243	Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra	90.52
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	90.08
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	90.08
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	89.78
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	88.9
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	88.67
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	88.62
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	88.4
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	88.03
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	87.99
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	87.41
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	85.31
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	85.09
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	84.94
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	83.99
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	83.69
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	82.53
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	82.49
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	81.54
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	81.17
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	80.87
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	80.83
d2p41a1	257	An RNA cap (nucleoside-2'-O-)-methyltransferase do	80.78

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=100.00  E-value=1.4e-41  Score=322.85  Aligned_cols=239  Identities=28%  Similarity=0.410  Sum_probs=200.4

Q ss_pred             CEEEEEcCCCCcccHHHHHHHHHhccCCCeeEEEEecCCccccccccceEEEecCCccEEEEEeCCeEEEEccCceeecC
Q 046527            1 HIAHLNIHDELLPFKDVIAKVIYDKNYPRIKTVVNKVGTIANEFRVPEFEILAGEDNMVTEVKQYGATFKLDYSLVYWNS   80 (380)
Q Consensus         1 hIahinl~~~~lp~k~~I~~aLldk~~p~iktVv~k~~~i~~~~r~~~~elLaG~~~~~~~v~E~G~~F~id~~~ff~n~   80 (380)
                      |||++++++++.+++..|++++.+ . +.+++|+.+ ..+.+++|.+.+++|+|++ +.+.++|+|+.|.+|+..+||++
T Consensus        17 di~ii~~~~~~~~~~~~i~~~l~~-~-~~~k~v~~k-~~i~g~~R~~~~~~l~G~~-~~~~~~E~g~~~~~d~~~~~f~~   92 (260)
T d2frna1          17 DVLLLPLRPELEPYKHRIAEVYAE-V-LGVKTVLRK-GHIHGETRKPDYELLYGSD-TVTVHVENGIKYKLDVAKIMFSP   92 (260)
T ss_dssp             TEEECC--CCSCSCCTHHHHHHHH-H-HTCSEEEEC-C----------CEEEECSC-CEEEEEETTEEEEEETTTSCCCG
T ss_pred             CEEEEECCCchhHHHHHHHHHHHh-h-cCCeEEEEc-CCccchhccccceecCCCC-ceeEEEecCeeEEeccccccEec
Confidence            799999999999999999999999 4 679999988 4567899999999999986 56677899999999999999999


Q ss_pred             hHHHHHHHHHhccCCCCeEEEecCCcchhHHHHhhcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHHHHH
Q 046527           81 RLEHEHLRIISQFRPGETICDMFAGIGPFAIPAAQKGC-IVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFIRQ  159 (380)
Q Consensus        81 rl~tE~~r~i~~i~~g~~VLDlfcGvG~fsl~aA~~g~-~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~l~~  159 (380)
                      ++.+|+.++...+.+|++|||+|||+|+|++++|+.|+ +|+|+|+||.++++|++|+++|+++++++++++|+++++. 
T Consensus        93 ~~~~er~ri~~~~~~g~~VlD~~aG~G~~~l~~a~~~~~~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~D~~~~~~-  171 (260)
T d2frna1          93 ANVKERVRMAKVAKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG-  171 (260)
T ss_dssp             GGHHHHHHHHHHCCTTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC-
T ss_pred             CCHHHHHHHHhhcCCccEEEECcceEcHHHHHHHHhCCcEEEEecCCHHHHHHHHHHHHHhCCCceEEEEEcchHHhcc-
Confidence            99999999999999999999999999999999998874 9999999999999999999999999999999999864310 


Q ss_pred             HhcCCCCCCCCcchhhhhhccCCCCcccccccccccccccccccccccccCCCCccccccccccCcccccccCCCCCCcc
Q 046527          160 LMTAPAGEINSESDVFNLKACGNSGIQANKKTGIENVGLDVQDKEVAGNITSNSEGLQNYCRNADASVTATKRPSDGCLE  239 (380)
Q Consensus       160 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (380)
                                                                                                      
T Consensus       172 --------------------------------------------------------------------------------  171 (260)
T d2frna1         172 --------------------------------------------------------------------------------  171 (260)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cCCCCCCCCCCCCCccccccCCCCCCCCCCceeeEEEecCCchHHHHHHHHHHhhhhcccCCCCcEEEEEecccCCCc--
Q 046527          240 ENGTTNSASGRKGKTSKRMKGSELPNTKTWEHVDHIIMNLPASALKFLDAFRGLIQRQYWKGSLPWIHCYCFIRANET--  317 (380)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~vmNLP~~A~eFLd~f~gl~~~~~~~~~~p~iH~Y~F~~~~~~--  317 (380)
                                         .          ..+|+||||+|..+.+||+.+..+++.+      ++||+|+|......  
T Consensus       172 -------------------~----------~~~D~Ii~~~p~~~~~~l~~a~~~l~~g------G~lh~~~~~~~~~~~~  216 (260)
T d2frna1         172 -------------------E----------NIADRILMGYVVRTHEFIPKALSIAKDG------AIIHYHNTVPEKLMPR  216 (260)
T ss_dssp             -------------------C----------SCEEEEEECCCSSGGGGHHHHHHHEEEE------EEEEEEEEEEGGGTTT
T ss_pred             -------------------C----------CCCCEEEECCCCchHHHHHHHHhhcCCC------CEEEEEeccccccchh
Confidence                               0          0289999999999999999888887665      79999999976543  


Q ss_pred             -hHHHHHHHHHHhcccCCCCeEEEeccCCCCCceEEEEEEech
Q 046527          318 -EELIISEAESALNACIQDPIFHKVRNVAPNKAMFCLSFRLPE  359 (380)
Q Consensus       318 -~~~~~~~~~~~lg~~~~~~~~~~VR~VaP~k~m~c~sF~lp~  359 (380)
                       ...++.++....|..+.....+.||+|||+++|+|++|+|..
T Consensus       217 ~~~e~~~~~~~~~g~~v~~~~~~~Vk~yaP~~~~v~~D~~i~~  259 (260)
T d2frna1         217 EPFETFKRITKEYGYDVEKLNELKIKRYAPGVWHVVLDLRVFK  259 (260)
T ss_dssp             TTHHHHHHHHHHTTCEEEEEEEEEEEEETTTEEEEEEEEEEEC
T ss_pred             hHHHHHHHHHHHcCCceEEEEEEEEECcCCCccEEEEEEEEeC
Confidence             234566778888988877788999999999999999999854

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.84  E-value=1.4e-19  Score=175.17  Aligned_cols=156  Identities=29%  Similarity=0.335  Sum_probs=129.0

Q ss_pred             EEEEEcCCC-CcccHHHHHHHHHhccCCCeeEEEEecCCc--cccccccceEEEecCCccEEEEEeCCeEEEEccC----
Q 046527            2 IAHLNIHDE-LLPFKDVIAKVIYDKNYPRIKTVVNKVGTI--ANEFRVPEFEILAGEDNMVTEVKQYGATFKLDYS----   74 (380)
Q Consensus         2 Iahinl~~~-~lp~k~~I~~aLldk~~p~iktVv~k~~~i--~~~~r~~~~elLaG~~~~~~~v~E~G~~F~id~~----   74 (380)
                      ++++++.+. +.+++..|.++|.. ..|.+++|+.+.+..  ..+.......++.|..+..+.+.|+|+.|.++..    
T Consensus        48 ~~vvq~~~~~~e~~~~~i~~aL~~-~~~~~~~i~~r~~~~~r~~~~l~~~~~~l~g~~~~~~~v~e~~~~~~~~~~~~~t  126 (324)
T d2as0a2          48 IASLQISSAGMERFKLDVAEAIME-VEPGIETVFEKNTGRSRRREGLPEIERVLLGKEKYRTIIQEGRAKFIVDMRGQKT  126 (324)
T ss_dssp             EEEEEECCHHHHTTHHHHHHHHHH-HCTTCCEEEEEECSHHHHHTTCCCEEEEEEESCCCEEEEEETTEEEEEESSSSSS
T ss_pred             EEEEEeCCHHHHHHHHHHHHHHHH-hcccceeeeeeccchhhhhcCCchhheeeccCCCceEEEEcCCEEEEeccccccc
Confidence            467888775 55788999999998 458999999876543  2223334566788988888899999999999865    


Q ss_pred             ceeecChHHHHHHHHHh-ccCCCCeEEEecCCcchhHHHHhhcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEecc
Q 046527           75 LVYWNSRLEHEHLRIIS-QFRPGETICDMFAGIGPFAIPAAQKGC-IVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMD  152 (380)
Q Consensus        75 ~ff~n~rl~tE~~r~i~-~i~~g~~VLDlfcGvG~fsl~aA~~g~-~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~D  152 (380)
                      .+|++++   +.++.+. .+++|++|||+|||+|.|++.+|+.|+ +|+++|+|+.+++++++|+++||+.++++++++|
T Consensus       127 G~flDqr---~~r~~~~~~~~~g~~VLDl~~g~G~~si~~a~~ga~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d  203 (324)
T d2as0a2         127 GFFLDQR---ENRLALEKWVQPGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGS  203 (324)
T ss_dssp             CCCSTTH---HHHHHHGGGCCTTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESC
T ss_pred             Ccccchh---hHHHHHHhhcCCCCeeecccCcccchhhhhhhcCCcEEEeecCCHHHHHHHHHHHHHcCCCccceeeech
Confidence            3777787   4444444 467899999999999999999999886 8999999999999999999999998889999999


Q ss_pred             HHHHHHHHh
Q 046527          153 AREFIRQLM  161 (380)
Q Consensus       153 a~e~l~~l~  161 (380)
                      +.+++..+.
T Consensus       204 ~~~~~~~~~  212 (324)
T d2as0a2         204 AFEEMEKLQ  212 (324)
T ss_dssp             HHHHHHHHH
T ss_pred             hhhhhHHHH
Confidence            999988775

>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein SMu776, middle and C-terminal domains
species: Streptococcus mutans [TaxId: 1309]

Probab=99.81  E-value=4e-18  Score=164.66  Aligned_cols=154  Identities=16%  Similarity=0.206  Sum_probs=124.5

Q ss_pred             CEEEEEcCCC-CcccHHHHHHHHHhccCCCeeEEEEecCCccccccccceEEEecC-CccEEEEEeCCeEEEEccCc---
Q 046527            1 HIAHLNIHDE-LLPFKDVIAKVIYDKNYPRIKTVVNKVGTIANEFRVPEFEILAGE-DNMVTEVKQYGATFKLDYSL---   75 (380)
Q Consensus         1 hIahinl~~~-~lp~k~~I~~aLldk~~p~iktVv~k~~~i~~~~r~~~~elLaG~-~~~~~~v~E~G~~F~id~~~---   75 (380)
                      +++++++... +.++++.|.++|.. .+|.+++++.+.....   .......++|. .+....++|+|++|.+++..   
T Consensus        49 ~~lviq~~~~~~~~~~~~i~~al~~-~~p~~~~i~~~~~~~g---~~~~~~~l~G~~~~~~~~v~E~Gl~f~vdl~~g~k  124 (317)
T d2b78a2          49 DFVLFSWYNSFVYQIRDEIVAAFRQ-VYPNFLGAYEKIRFKG---IDNVSAHLYGQEAPEQFLILENGISYNVFLNDGLM  124 (317)
T ss_dssp             TEEEEEECSHHHHHTHHHHHHHHHH-HSTTCSEEEEEECC-------CCEEEEEESCCCSSEEEEETTEEEEECSSSSSC
T ss_pred             CEEEEEECChHHHHHHHHHHHHHHH-Hhhhhheeeehhhhcc---ccccceEEecCCCCcceeeeeCCEEEEEEcccccc
Confidence            3577887764 56788999999998 4589999988764321   12234567774 45667789999999999874   


Q ss_pred             --eeecChHHHHH-HHHHhccCCCCeEEEecCCcchhHHHHhhcCC-EEEEEeCCHHHHHHHHHHHHHcCCC-CcEEEEe
Q 046527           76 --VYWNSRLEHEH-LRIISQFRPGETICDMFAGIGPFAIPAAQKGC-IVFANDLNPDSVHYLKINAKVNKVD-NYVRAYN  150 (380)
Q Consensus        76 --ff~n~rl~tE~-~r~i~~i~~g~~VLDlfcGvG~fsl~aA~~g~-~V~avDlnp~Aie~a~~Na~lN~l~-~ri~~~~  150 (380)
                        +|.++|   +. .+++..+.+|++|||+|||+|+||+.++..|+ .|+++|+++.+++++++|+++|+++ +++++++
T Consensus       125 tGlflDqR---~~r~~l~~~~~~g~~VLdlf~~~G~~sl~aa~~ga~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~  201 (317)
T d2b78a2         125 TGIFLDQR---QVRNELINGSAAGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVV  201 (317)
T ss_dssp             CSSCGGGH---HHHHHHHHTTTBTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEE
T ss_pred             cCCcHHHH---HHHHHHHHHhhCCCceeecCCCCcHHHHHHHhCCCceEEEecCCHHHHHHHHHHHHHhcccCcceEEEE
Confidence              677777   44 34567788999999999999999999998887 8999999999999999999999996 5699999


Q ss_pred             ccHHHHHHHHh
Q 046527          151 MDAREFIRQLM  161 (380)
Q Consensus       151 ~Da~e~l~~l~  161 (380)
                      +|+.++++.+.
T Consensus       202 ~d~~~~l~~~~  212 (317)
T d2b78a2         202 MDVFDYFKYAR  212 (317)
T ss_dssp             SCHHHHHHHHH
T ss_pred             ccHHHHHHHHH
Confidence            99999998875

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=99.80  E-value=1.7e-18  Score=167.20  Aligned_cols=151  Identities=21%  Similarity=0.208  Sum_probs=121.2

Q ss_pred             EEEEEcCCC-CcccHHHHHHHHHhccCCCeeEEEEecCCccc--cccccceEEEecCCccEEEEEeCCeEEEEccCc---
Q 046527            2 IAHLNIHDE-LLPFKDVIAKVIYDKNYPRIKTVVNKVGTIAN--EFRVPEFEILAGEDNMVTEVKQYGATFKLDYSL---   75 (380)
Q Consensus         2 Iahinl~~~-~lp~k~~I~~aLldk~~p~iktVv~k~~~i~~--~~r~~~~elLaG~~~~~~~v~E~G~~F~id~~~---   75 (380)
                      .++++.... +..++..|.++|..    .+++|+.+.+....  +......++++|+.+....+.|+|++|.+++..   
T Consensus        52 ~~vvq~~~~~~e~~~~~i~~~L~~----~~~~i~~~~~~~~r~~egl~~~~~~l~g~~~~~~~v~E~G~~f~v~l~~~~~  127 (318)
T d1wxxa2          52 HAVVQATAHAWEGLLPQVAEALRP----HVQSVLAKNDARTRELEGLPLYVRPLLGEVPERVQVQEGRVRYLVDLRAGQK  127 (318)
T ss_dssp             EEEEEECSHHHHTTHHHHHHHHGG----GCSEEEEEECCTHHHHTTCCCEEEEEESCCCSEEEEEETTEEEEEECSTTSC
T ss_pred             EEEEEeCcHHHHHHHHHHHHHhcc----ccceEEEecccchHhhcCCcceeeeecCCccceEEEEECCEEEEEechhccc
Confidence            467777765 55778999999854    35788877654321  222345678999988788899999999999864   


Q ss_pred             --eeecChHHHHHHHHHhccCCCCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccH
Q 046527           76 --VYWNSRLEHEHLRIISQFRPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDA  153 (380)
Q Consensus        76 --ff~n~rl~tE~~r~i~~i~~g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da  153 (380)
                        +|.++|.   .++++. ..+|++|||+|||+|.|++++|+.+++|+++|+|+.++++|++|+++||+++ ++++++|+
T Consensus       128 tG~flDqr~---~r~~~~-~~~g~rVLDl~~gtG~~s~~~a~g~~~V~~vD~s~~al~~a~~n~~~ngl~~-~~~i~~d~  202 (318)
T d1wxxa2         128 TGAYLDQRE---NRLYME-RFRGERALDVFSYAGGFALHLALGFREVVAVDSSAEALRRAEENARLNGLGN-VRVLEANA  202 (318)
T ss_dssp             CCCCGGGHH---HHHHGG-GCCEEEEEEETCTTTHHHHHHHHHEEEEEEEESCHHHHHHHHHHHHHTTCTT-EEEEESCH
T ss_pred             cccchhhhh---hHHHHH-HhCCCeeeccCCCCcHHHHHHHhcCCcEEeecchHHHHHHHHHHHHHcCCCC-cceeeccH
Confidence              7777773   334443 4479999999999999999999877899999999999999999999999986 99999999


Q ss_pred             HHHHHHHh
Q 046527          154 REFIRQLM  161 (380)
Q Consensus       154 ~e~l~~l~  161 (380)
                      .++++.+.
T Consensus       203 ~~~~~~~~  210 (318)
T d1wxxa2         203 FDLLRRLE  210 (318)
T ss_dssp             HHHHHHHH
T ss_pred             HHHhhhhH
Confidence            99998775

>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Putative methyltransferase Atu0340
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.70  E-value=1.3e-16  Score=153.56  Aligned_cols=108  Identities=18%  Similarity=0.183  Sum_probs=91.7

Q ss_pred             cCCccEEEEEeCCeEEEEccCc-----eeecChHHHHHH-HHHhccCCCCeEEEecCCcchhHHHHhhcCCEEEEEeCCH
Q 046527           54 GEDNMVTEVKQYGATFKLDYSL-----VYWNSRLEHEHL-RIISQFRPGETICDMFAGIGPFAIPAAQKGCIVFANDLNP  127 (380)
Q Consensus        54 G~~~~~~~v~E~G~~F~id~~~-----ff~n~rl~tE~~-r~i~~i~~g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp  127 (380)
                      +..+..-.+.|+|++|.+++..     +|.++|.....+ ..+....++.+|||+|||+|.|++.+|..|++|++||.++
T Consensus        85 ~~~p~~~~v~e~gl~f~v~~~~~~~tG~f~dqr~nr~~~~~~~~~~~~~~rVLdlf~~tG~~sl~aa~~GA~V~~VD~s~  164 (309)
T d2igta1          85 EALGETWPLSLLGVEFLGRFTAFRHVGVFPEQIVHWEWLKNAVETADRPLKVLNLFGYTGVASLVAAAAGAEVTHVDASK  164 (309)
T ss_dssp             SCCCSEEEEEETTEEEEEECCSSSCCSCCGGGHHHHHHHHHHHHHSSSCCEEEEETCTTCHHHHHHHHTTCEEEEECSCH
T ss_pred             CCCCCeEEEEEeEEEEEEeccCCCccccccchhHHHHHHHHHHhhccCCCeEEEecCCCcHHHHHHHhCCCeEEEEeChH
Confidence            3345556788999999999874     777777554443 2345677899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCCC-cEEEEeccHHHHHHHHh
Q 046527          128 DSVHYLKINAKVNKVDN-YVRAYNMDAREFIRQLM  161 (380)
Q Consensus       128 ~Aie~a~~Na~lN~l~~-ri~~~~~Da~e~l~~l~  161 (380)
                      .++++|++|+++|++.+ +++++++|+.++++.+.
T Consensus       165 ~al~~a~~N~~ln~~~~~~~~~i~~D~~~~l~~~~  199 (309)
T d2igta1         165 KAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREE  199 (309)
T ss_dssp             HHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHH
T ss_pred             HHHHHHHHhhhhhcccCCcEEEEeCCHHHhHHHHh
Confidence            99999999999999985 69999999999998765

>d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: (Uracil-5-)-methyltransferase
domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=99.64  E-value=7.1e-16  Score=149.19  Aligned_cols=105  Identities=21%  Similarity=0.307  Sum_probs=89.5

Q ss_pred             ceEEEecCCccEEEEEeCCeEEEEccCceeecChHHHHHH-H-HH--hccCCCCeEEEecCCcchhHHHHhhcCCEEEEE
Q 046527           48 EFEILAGEDNMVTEVKQYGATFKLDYSLVYWNSRLEHEHL-R-II--SQFRPGETICDMFAGIGPFAIPAAQKGCIVFAN  123 (380)
Q Consensus        48 ~~elLaG~~~~~~~v~E~G~~F~id~~~ff~n~rl~tE~~-r-~i--~~i~~g~~VLDlfcGvG~fsl~aA~~g~~V~av  123 (380)
                      ..+.++|+..+.+   .+|+.|++++.+|||.|+.+.+.+ . +.  ....++++|||+|||+|.||+++|+++.+|+|+
T Consensus       164 ~~~~~~g~~~~~~---~~g~~~~i~p~sFfQ~N~~~~e~l~~~v~~~~~~~~~~~vlDLycG~G~fsl~La~~~~~V~gv  240 (358)
T d1uwva2         164 ILETVSGEMPWYD---SNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGV  240 (358)
T ss_dssp             CCEEEECCCCEEE---ETTEEEECCSSSCCCSBHHHHHHHHHHHHHHHTCCTTCEEEEESCTTTTTHHHHHTTSSEEEEE
T ss_pred             eEEeecCCceEEe---cCCEEEEECCchhhccchhhhhHHHHHHHHhhccCCCceEEEecccccccchhccccccEEEec
Confidence            3567788765433   389999999999999999888865 2 22  345678999999999999999999999999999


Q ss_pred             eCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHH
Q 046527          124 DLNPDSVHYLKINAKVNKVDNYVRAYNMDAREF  156 (380)
Q Consensus       124 Dlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~  156 (380)
                      |.++.|++.|++|++.|++.+ ++++.+|+.+.
T Consensus       241 E~~~~ai~~A~~na~~n~i~n-~~~~~~~~~~~  272 (358)
T d1uwva2         241 EGVPALVEKGQQNARLNGLQN-VTFYHENLEED  272 (358)
T ss_dssp             ESCHHHHHHHHHHHHHTTCCS-EEEEECCTTSC
T ss_pred             cCcHHHHHHHHHhHHhccccc-ceeeecchhhh
Confidence            999999999999999999997 89999887654

>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methyltransferase SPy1538
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.48  E-value=1.4e-13  Score=118.36  Aligned_cols=70  Identities=26%  Similarity=0.365  Sum_probs=63.4

Q ss_pred             HhccCCCCeEEEecCCcchhHHHHhhcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHHHHH
Q 046527           90 ISQFRPGETICDMFAGIGPFAIPAAQKGC-IVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFIRQ  159 (380)
Q Consensus        90 i~~i~~g~~VLDlfcGvG~fsl~aA~~g~-~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~l~~  159 (380)
                      +...-+|.+|||+|||+|.+|+.++.+|+ +|+++|.|+.+++.+++|++.+++.++++++++|+.+++..
T Consensus         9 l~~~~~g~~vlDl~~GtG~~~iea~~rga~~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~~l~~   79 (152)
T d2esra1           9 IGPYFNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDC   79 (152)
T ss_dssp             HCSCCCSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHH
T ss_pred             HHhhCCCCeEEEcCCccCHHHHHHHHhCcceeeeehhchhhhhhhhhhhhhcccccchhhhcccccccccc
Confidence            33345789999999999999999999987 99999999999999999999999999999999999988643

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.44  E-value=6.9e-13  Score=117.00  Aligned_cols=67  Identities=21%  Similarity=0.270  Sum_probs=62.6

Q ss_pred             hccCCCCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHHH
Q 046527           91 SQFRPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFI  157 (380)
Q Consensus        91 ~~i~~g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~l  157 (380)
                      ..+.+|++|||+|||+|.+++.+|+.+++|+|+|+++.+++.|++|++.+++.++++++++|+.+.+
T Consensus        29 l~~~~g~~VLDiGcGsG~~s~~lA~~~~~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~~~~   95 (186)
T d1l3ia_          29 AEPGKNDVAVDVGCGTGGVTLELAGRVRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEAL   95 (186)
T ss_dssp             HCCCTTCEEEEESCTTSHHHHHHHTTSSEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHH
T ss_pred             cCCCCCCEEEEEECCeEcccccccccceEEEEecCCHHHHHHHHHHHHHcCCCcceEEEECchhhcc
Confidence            4678999999999999999999999888999999999999999999999999878999999987664

>d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase EF2452
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.36  E-value=4.7e-12  Score=112.22  Aligned_cols=73  Identities=23%  Similarity=0.356  Sum_probs=66.6

Q ss_pred             HHhccCCCCeEEEecCCcchhHHHHhhcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHHHHHHh
Q 046527           89 IISQFRPGETICDMFAGIGPFAIPAAQKGC-IVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFIRQLM  161 (380)
Q Consensus        89 ~i~~i~~g~~VLDlfcGvG~fsl~aA~~g~-~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~l~~l~  161 (380)
                      ++....+|.+|||+|||+|.+|+.++.+|+ .|++||.|+.+++.+++|++.++..++++++++|+.+++.++.
T Consensus        35 ~l~~~~~~~~vLDlfaGsG~~g~ea~srGa~~v~~ve~~~~a~~~~~~N~~~~~~~~~~~i~~~D~~~~l~~~~  108 (182)
T d2fhpa1          35 MIGPYFDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFY  108 (182)
T ss_dssp             HHCSCCSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHH
T ss_pred             HHHHhcCCCEEEEcccccccccceeeecchhHHHHHHHHHHHHHHHHHHhhhhhcccccccccccchhhhhhhc
Confidence            344456799999999999999999999988 8999999999999999999999998889999999999998875

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=99.34  E-value=8.6e-12  Score=116.26  Aligned_cols=89  Identities=22%  Similarity=0.342  Sum_probs=68.3

Q ss_pred             CCeEEEEccCceeecChHHHHHH--HHH-hccCCCCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcC
Q 046527           65 YGATFKLDYSLVYWNSRLEHEHL--RII-SQFRPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVNK  141 (380)
Q Consensus        65 ~G~~F~id~~~ff~n~rl~tE~~--r~i-~~i~~g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~lN~  141 (380)
                      ......++|+-.|-.-...|.++  +.+ ....+|++|||+|||+|.+++.+++.|++|+|+|+|+.|++.|++|++.|+
T Consensus        87 ~~~~i~i~pg~aFGTG~H~TT~l~l~~l~~~~~~g~~VLDiGcGsG~l~i~aa~~g~~V~gvDis~~av~~A~~na~~n~  166 (254)
T d2nxca1          87 AEIPLVIEPGMAFGTGHHETTRLALKALARHLRPGDKVLDLGTGSGVLAIAAEKLGGKALGVDIDPMVLPQAEANAKRNG  166 (254)
T ss_dssp             SSEEEECCCC-----CCSHHHHHHHHHHHHHCCTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCGGGHHHHHHHHHHTT
T ss_pred             cceEEEEccccccCccccchhhHHHHHHHhhcCccCEEEEcccchhHHHHHHHhcCCEEEEEECChHHHHHHHHHHHHcC
Confidence            34567778877776544333332  333 356899999999999999999999999999999999999999999999999


Q ss_pred             CCCcEEEEeccHHH
Q 046527          142 VDNYVRAYNMDARE  155 (380)
Q Consensus       142 l~~ri~~~~~Da~e  155 (380)
                      +..  +++++|+.+
T Consensus       167 ~~~--~~~~~d~~~  178 (254)
T d2nxca1         167 VRP--RFLEGSLEA  178 (254)
T ss_dssp             CCC--EEEESCHHH
T ss_pred             Cce--eEEeccccc
Confidence            964  678888764

>d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methylase YhhF
species: Escherichia coli [TaxId: 562]

Probab=99.30  E-value=4.6e-12  Score=112.07  Aligned_cols=63  Identities=22%  Similarity=0.226  Sum_probs=58.3

Q ss_pred             CCCCeEEEecCCcchhHHHHhhcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHHH
Q 046527           94 RPGETICDMFAGIGPFAIPAAQKGC-IVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFI  157 (380)
Q Consensus        94 ~~g~~VLDlfcGvG~fsl~aA~~g~-~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~l  157 (380)
                      -.+.+|||+|||+|.+|+.++.+|+ .|++||.|+.+++.+++|++.+++.+ ++++++|+.+++
T Consensus        42 ~~~~~vLDlfaGsG~~giealsrGa~~v~~VE~~~~a~~~~k~N~~~~~~~~-~~ii~~d~~~~l  105 (183)
T d2fpoa1          42 IVDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKAGN-ARVVNSNAMSFL  105 (183)
T ss_dssp             HTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCS-EEEECSCHHHHH
T ss_pred             cchhhhhhhhccccceeeeEEecCcceeEEEEEeechhhHHHHHHhhccccc-eeeeeecccccc
Confidence            4678999999999999999999988 89999999999999999999999876 899999998775

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.28  E-value=1.1e-11  Score=109.79  Aligned_cols=63  Identities=25%  Similarity=0.304  Sum_probs=57.3

Q ss_pred             ccCCCCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCC-cEEEEeccHH
Q 046527           92 QFRPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKVDN-YVRAYNMDAR  154 (380)
Q Consensus        92 ~i~~g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~lN~l~~-ri~~~~~Da~  154 (380)
                      ...++++|||+|||+|.+++.+++.+.+|+++|+|+.+++.+++|++.|++.+ ++++..+|+.
T Consensus        49 ~~~~~~~VLDiGcG~G~~~~~la~~~~~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~  112 (194)
T d1dusa_          49 VVDKDDDILDLGCGYGVIGIALADEVKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLY  112 (194)
T ss_dssp             CCCTTCEEEEETCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTT
T ss_pred             CcCCCCeEEEEeecCChhHHHHHhhccccceeeeccccchhHHHHHHHhCCccceEEEEEcchh
Confidence            45778999999999999999999998999999999999999999999999975 5888888764

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=99.27  E-value=7e-12  Score=109.83  Aligned_cols=68  Identities=22%  Similarity=0.365  Sum_probs=59.7

Q ss_pred             hccCCCCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHHHHHH
Q 046527           91 SQFRPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFIRQL  160 (380)
Q Consensus        91 ~~i~~g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~l~~l  160 (380)
                      ..+.+|.+|||+|||+|.+++.++.+|++|+++|.|+.+++.+++|++.|++.+  ++...|+..++...
T Consensus        37 ~~~~~g~~vLDl~~G~G~~~i~a~~~ga~vv~vD~~~~a~~~~~~N~~~~~~~~--~v~~~~~d~~~~~~  104 (171)
T d1ws6a1          37 LRYPRRGRFLDPFAGSGAVGLEAASEGWEAVLVEKDPEAVRLLKENVRRTGLGA--RVVALPVEVFLPEA  104 (171)
T ss_dssp             HHCTTCCEEEEETCSSCHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHHHTCCC--EEECSCHHHHHHHH
T ss_pred             ccccCCCeEEEeccccchhhhhhhhccchhhhcccCHHHHhhhhHHHHhhcccc--ceeeeehhcccccc
Confidence            356789999999999999999999999999999999999999999999999987  45667777666544

>d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Escherichia coli [TaxId: 562]

Probab=99.21  E-value=2e-11  Score=115.07  Aligned_cols=88  Identities=22%  Similarity=0.293  Sum_probs=73.5

Q ss_pred             CCeEEEEccCceeecChHHHHHH--HHHhcc-CCCCeEEEecCCcchhHHHHhhcC--CEEEEEeCCHHHHHHHHHHHHH
Q 046527           65 YGATFKLDYSLVYWNSRLEHEHL--RIISQF-RPGETICDMFAGIGPFAIPAAQKG--CIVFANDLNPDSVHYLKINAKV  139 (380)
Q Consensus        65 ~G~~F~id~~~ff~n~rl~tE~~--r~i~~i-~~g~~VLDlfcGvG~fsl~aA~~g--~~V~avDlnp~Aie~a~~Na~l  139 (380)
                      .|..|.+++..  +.||..||.+  ..+... ..+.+|||+|||+|.+++.+|...  ++|+|+|+|+.|++.|++|++.
T Consensus        77 ~~~~~~v~~~V--lIPRpeTE~lv~~~l~~~~~~~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~Al~~A~~Na~~  154 (274)
T d2b3ta1          77 WSLPLFVSPAT--LIPRPDTECLVEQALARLPEQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQH  154 (274)
T ss_dssp             TTEEEECCTTS--CCCCTTHHHHHHHHHHHSCSSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHH
T ss_pred             eeeEEEEeccc--cccccchhhhhhhHhhhhcccccceeeeehhhhHHHHHHHhhCCcceeeeccchhHHHhHHHHHHHH
Confidence            89999999986  5788888865  223333 445689999999999999998763  5999999999999999999999


Q ss_pred             cCCCCcEEEEeccHHH
Q 046527          140 NKVDNYVRAYNMDARE  155 (380)
Q Consensus       140 N~l~~ri~~~~~Da~e  155 (380)
                      +++.+ ++++++|..+
T Consensus       155 ~~~~~-v~~~~~d~~~  169 (274)
T d2b3ta1         155 LAIKN-IHILQSDWFS  169 (274)
T ss_dssp             HTCCS-EEEECCSTTG
T ss_pred             hCccc-ceeeeccccc
Confidence            99975 9999998643

>d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TRM1-like
domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.21  E-value=1e-10  Score=114.68  Aligned_cols=98  Identities=19%  Similarity=0.233  Sum_probs=74.9

Q ss_pred             EEEEeCCeEEEEccC------ceeecChHHHHHHH--HHhccCCCCeEEEecCCcchhHHHHhh-cCC-EEEEEeCCHHH
Q 046527           60 TEVKQYGATFKLDYS------LVYWNSRLEHEHLR--IISQFRPGETICDMFAGIGPFAIPAAQ-KGC-IVFANDLNPDS  129 (380)
Q Consensus        60 ~~v~E~G~~F~id~~------~ff~n~rl~tE~~r--~i~~i~~g~~VLDlfcGvG~fsl~aA~-~g~-~V~avDlnp~A  129 (380)
                      .+++|++.++.+.-.      .+|+|+.....|..  .+....++.+|||++||+|.+++.+|+ .+. .|+++|+|+.|
T Consensus         2 ~~i~EG~~~i~vp~~~~~~~~~vFYNp~q~~NRDlsvl~~~~~~~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~A   81 (375)
T d2dula1           2 IEVQEGKAKILIPKAESIYDSPVFYNPRMALNRDIVVVLLNILNPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDA   81 (375)
T ss_dssp             EEEEETTEEEEEC--------CCCCCGGGHHHHHHHHHHHHHHCCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHH
T ss_pred             eEEEeCcEEEEecCCCCCCCCCcccCHHHhhhhHHHHHHHHHhCCCEEEEcCCCccHHHHHHHHhCCCCEEEEecCCHHH
Confidence            467889999988533      27888876666532  233344678999999999999998776 344 99999999999


Q ss_pred             HHHHHHHHHHcCCCC--------------cEEEEeccHHHHH
Q 046527          130 VHYLKINAKVNKVDN--------------YVRAYNMDAREFI  157 (380)
Q Consensus       130 ie~a~~Na~lN~l~~--------------ri~~~~~Da~e~l  157 (380)
                      ++++++|+++|++.+              .+.+.++|+..++
T Consensus        82 ~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~  123 (375)
T d2dula1          82 YELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLM  123 (375)
T ss_dssp             HHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHH
T ss_pred             HHHHHHHHHhcCccccccccccccccccceeEeehhhhhhhh
Confidence            999999999998754              3567777776654

>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein PH1948
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.20  E-value=6e-11  Score=106.44  Aligned_cols=76  Identities=20%  Similarity=0.230  Sum_probs=59.2

Q ss_pred             eecChHHHHH-HHHHhcc--CCCCeEEEecCCcchhHHHHhhcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEecc
Q 046527           77 YWNSRLEHEH-LRIISQF--RPGETICDMFAGIGPFAIPAAQKGC-IVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMD  152 (380)
Q Consensus        77 f~n~rl~tE~-~r~i~~i--~~g~~VLDlfcGvG~fsl~aA~~g~-~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~D  152 (380)
                      |+++...+.. +..+...  -.|.+|||+|||+|.+++.++.+|+ +|+|+|+++.+++.+++|++.+++.  ..++++|
T Consensus        25 y~Tp~~~a~~~~~~~~~~~dl~g~~vLDlg~GtG~l~i~a~~~g~~~v~~vdi~~~~~~~a~~N~~~~~~~--~~~~~~d  102 (201)
T d1wy7a1          25 YRTPGNAASELLWLAYSLGDIEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKGK--FKVFIGD  102 (201)
T ss_dssp             CCCCHHHHHHHHHHHHHTTSSTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGTTS--EEEEESC
T ss_pred             CCCCHHHHHHHHHHHHhcCCCCCCEEEECcCcchHHHHHHHHcCCCEEEEEcCcHHHHHHHHHHHHHcCCC--ceEEECc
Confidence            4555544333 3333322  3688999999999999999999886 9999999999999999999988864  6788877


Q ss_pred             HH
Q 046527          153 AR  154 (380)
Q Consensus       153 a~  154 (380)
                      +.
T Consensus       103 ~~  104 (201)
T d1wy7a1         103 VS  104 (201)
T ss_dssp             GG
T ss_pred             hh
Confidence            63

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.10  E-value=1.1e-10  Score=104.92  Aligned_cols=54  Identities=28%  Similarity=0.281  Sum_probs=47.9

Q ss_pred             CCCeEEEecCCcchhHHHHhhcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHH
Q 046527           95 PGETICDMFAGIGPFAIPAAQKGC-IVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAR  154 (380)
Q Consensus        95 ~g~~VLDlfcGvG~fsl~aA~~g~-~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~  154 (380)
                      .|++|||+|||+|.+++.++..|+ +|+++|+++.+++.|++|+.      .+.++++|+.
T Consensus        48 ~Gk~VLDlGcGtG~l~i~a~~~ga~~V~~vDid~~a~~~ar~N~~------~~~~~~~D~~  102 (197)
T d1ne2a_          48 GGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCG------GVNFMVADVS  102 (197)
T ss_dssp             BTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHCT------TSEEEECCGG
T ss_pred             CCCEEEEeCCCCcHHHHHHHHcCCCcccccccCHHHHHHHHHccc------cccEEEEehh
Confidence            689999999999999999999886 89999999999999999963      3678888863

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=99.07  E-value=7.9e-11  Score=109.48  Aligned_cols=65  Identities=17%  Similarity=0.100  Sum_probs=57.0

Q ss_pred             hccCCCCeEEEecCCcchhHHHHhhc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHH
Q 046527           91 SQFRPGETICDMFAGIGPFAIPAAQK---GCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDARE  155 (380)
Q Consensus        91 ~~i~~g~~VLDlfcGvG~fsl~aA~~---g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e  155 (380)
                      ..+++|++|||+|||+|.+++.+|+.   ..+|+++|.++++++.|++|++.++..+++++.++|+.+
T Consensus        81 l~i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~  148 (250)
T d1yb2a1          81 CGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIAD  148 (250)
T ss_dssp             CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTT
T ss_pred             cCCCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeec
Confidence            46789999999999999999999975   349999999999999999999988666669999988643

>d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase HI0767
species: Haemophilus influenzae [TaxId: 727]

Probab=99.07  E-value=2e-10  Score=101.25  Aligned_cols=64  Identities=22%  Similarity=0.243  Sum_probs=57.3

Q ss_pred             CCCCeEEEecCCcchhHHHHhhcCC-EEEEEeCCHHHHHHHHHHHHHcCCCC-cEEEEeccHHHHH
Q 046527           94 RPGETICDMFAGIGPFAIPAAQKGC-IVFANDLNPDSVHYLKINAKVNKVDN-YVRAYNMDAREFI  157 (380)
Q Consensus        94 ~~g~~VLDlfcGvG~fsl~aA~~g~-~V~avDlnp~Aie~a~~Na~lN~l~~-ri~~~~~Da~e~l  157 (380)
                      -.|.+|||+|||+|.+|+.++.+|+ .|+.||.|+.+++.+++|++..++.+ ...+.+.|+.+++
T Consensus        42 ~~~~~vLDlFaGsG~~glEalSRGA~~v~fVE~~~~a~~~ik~Ni~~l~~~~~~~~~~~~d~~~~l  107 (183)
T d2ifta1          42 IHQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFL  107 (183)
T ss_dssp             HTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHT
T ss_pred             cccceEeecccCccceeeeeeeecceeeEEeecccchhhhHhhHHhhhcccccccccccccccccc
Confidence            4678999999999999999999998 99999999999999999999988864 5778888887664

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=99.03  E-value=3.5e-10  Score=101.86  Aligned_cols=72  Identities=19%  Similarity=0.118  Sum_probs=64.5

Q ss_pred             HHHHHHHHhccCCCCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHH
Q 046527           83 EHEHLRIISQFRPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDARE  155 (380)
Q Consensus        83 ~tE~~r~i~~i~~g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e  155 (380)
                      .++.+.....+++|++|||+|||+|.++..+++++.+|+|+|+|+.+++.|++++..+++.+ +.++++|+.+
T Consensus         4 ~~~~l~~~~~~~~~~rILDiGcGtG~~~~~la~~~~~v~gvD~S~~~l~~A~~~~~~~~~~~-~~~~~~d~~~   75 (234)
T d1xxla_           4 SLGLMIKTAECRAEHRVLDIGAGAGHTALAFSPYVQECIGVDATKEMVEVASSFAQEKGVEN-VRFQQGTAES   75 (234)
T ss_dssp             HHHHHHHHHTCCTTCEEEEESCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHHTCCS-EEEEECBTTB
T ss_pred             HHHHHHHHhCCCCCCEEEEeCCcCcHHHHHHHHhCCeEEEEeCChhhhhhhhhhhccccccc-cccccccccc
Confidence            34445555788999999999999999999999999999999999999999999999999976 9999999864

>d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Thermotoga maritima [TaxId: 2336]

Probab=99.01  E-value=6e-10  Score=104.59  Aligned_cols=90  Identities=23%  Similarity=0.306  Sum_probs=74.2

Q ss_pred             CCeEEEEccCceeecChHHHHHH-HH-Hhc--cCCCCeEEEecCCcchhHHHHhhcC-CEEEEEeCCHHHHHHHHHHHHH
Q 046527           65 YGATFKLDYSLVYWNSRLEHEHL-RI-ISQ--FRPGETICDMFAGIGPFAIPAAQKG-CIVFANDLNPDSVHYLKINAKV  139 (380)
Q Consensus        65 ~G~~F~id~~~ff~n~rl~tE~~-r~-i~~--i~~g~~VLDlfcGvG~fsl~aA~~g-~~V~avDlnp~Aie~a~~Na~l  139 (380)
                      .|..|.++++.  +.||..||.+ .. +..  -.+..+|+|+|||+|.+++.++... ++|+|+|+|+.|+++|++|++.
T Consensus        78 ~~~~f~v~~~v--lIPRpeTE~lv~~~~~~~~~~~~~~vld~g~GsG~i~~~la~~~~~~v~a~Dis~~Al~~A~~Na~~  155 (271)
T d1nv8a_          78 MGLSFLVEEGV--FVPRPETEELVELALELIRKYGIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAER  155 (271)
T ss_dssp             TTEEEECCTTS--CCCCTTHHHHHHHHHHHHHHHTCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHH
T ss_pred             eeeEEEEecCc--cCchhhhhhhhhhhhhhhccccccEEEEeeeeeehhhhhhhhcccceeeechhhhhHHHHHHHHHHH
Confidence            89999999986  4788888865 22 211  1234589999999999999998764 5999999999999999999999


Q ss_pred             cCCCCcEEEEeccHHHH
Q 046527          140 NKVDNYVRAYNMDAREF  156 (380)
Q Consensus       140 N~l~~ri~~~~~Da~e~  156 (380)
                      |++.+++.+..+|..+.
T Consensus       156 ~~~~~~~~i~~~~~~~~  172 (271)
T d1nv8a_         156 HGVSDRFFVRKGEFLEP  172 (271)
T ss_dssp             TTCTTSEEEEESSTTGG
T ss_pred             cCCCceeEEeecccccc
Confidence            99999899998887654

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.97  E-value=8.8e-10  Score=96.97  Aligned_cols=68  Identities=26%  Similarity=0.270  Sum_probs=57.9

Q ss_pred             HHHHHHhccCCCCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHH
Q 046527           85 EHLRIISQFRPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAR  154 (380)
Q Consensus        85 E~~r~i~~i~~g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~  154 (380)
                      +.++.+..+.+| +|||+|||+|..++.++++|.+|+|+|+++.+++.++++++..++++ +++...|+.
T Consensus        21 ~~~~~~~~~~~g-rvLDiGcG~G~~~~~la~~g~~v~gvD~s~~~l~~a~~~~~~~~~~~-~~~~~~d~~   88 (198)
T d2i6ga1          21 DVLAAAKVVAPG-RTLDLGCGNGRNSLYLAANGYDVTAWDKNPASMANLERIKAAEGLDN-LQTDLVDLN   88 (198)
T ss_dssp             HHHHHHTTSCSC-EEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCTT-EEEEECCTT
T ss_pred             HHHHHcccCCCC-cEEEECCCCCHHHHHHHHHhhhhccccCcHHHHHHHHHHhhhccccc-hhhhheecc
Confidence            334444555555 89999999999999999999999999999999999999999999986 888877653

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=98.95  E-value=9.4e-10  Score=97.84  Aligned_cols=65  Identities=25%  Similarity=0.175  Sum_probs=59.8

Q ss_pred             HhccCCCCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHH
Q 046527           90 ISQFRPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDARE  155 (380)
Q Consensus        90 i~~i~~g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e  155 (380)
                      ...++++++|||+|||+|.++..+++.+++|+|+|+|+.+++.|+++++.++..+ ++++++|+.+
T Consensus        10 ~~~l~~~~rVLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~i~~A~~~~~~~~~~~-i~~~~~d~~~   74 (231)
T d1vl5a_          10 IAALKGNEEVLDVATGGGHVANAFAPFVKKVVAFDLTEDILKVARAFIEGNGHQQ-VEYVQGDAEQ   74 (231)
T ss_dssp             HHTCCSCCEEEEETCTTCHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHTTCCS-EEEEECCC-C
T ss_pred             hcCCCCcCEEEEecccCcHHHHHHHHhCCEEEEEECCHHHHhhhhhccccccccc-cccccccccc
Confidence            3578899999999999999999999999999999999999999999999999876 9999999865

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=98.94  E-value=1.3e-09  Score=98.81  Aligned_cols=67  Identities=22%  Similarity=0.229  Sum_probs=61.5

Q ss_pred             HhccCCCCeEEEecCCcchhHHHHhhc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHH
Q 046527           90 ISQFRPGETICDMFAGIGPFAIPAAQK-GCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREF  156 (380)
Q Consensus        90 i~~i~~g~~VLDlfcGvG~fsl~aA~~-g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~  156 (380)
                      ...+.+|++|||+|||+|.++..+++. +++|+|+|+|+.+++.|++++..+++.++++++.+|+.+.
T Consensus        28 ~~~l~pg~~VLDiGCG~G~~~~~la~~~~~~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d~~~~   95 (245)
T d1nkva_          28 VLRMKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGY   95 (245)
T ss_dssp             HTCCCTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTC
T ss_pred             HcCCCCCCEEEEEcCCCCHHHHHHHHhcCCEEEEEecccchhhHHHHHHHHhhccccchhhhhHHhhc
Confidence            356889999999999999999999875 7899999999999999999999999999999999998763

>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Methyltransferase 10 domain
domain: Methyltransferase 10 domain containing protein METT10D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.90  E-value=1.1e-09  Score=101.17  Aligned_cols=58  Identities=14%  Similarity=0.174  Sum_probs=53.1

Q ss_pred             CCeEEEecCCcchhHHHHhhc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccH
Q 046527           96 GETICDMFAGIGPFAIPAAQK--GCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDA  153 (380)
Q Consensus        96 g~~VLDlfcGvG~fsl~aA~~--g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da  153 (380)
                      ..++||+|||+|.+++.+|++  +.+|+|+|++++|++.|++|++.|++.+++.+++.+.
T Consensus        62 ~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~~A~~N~~~n~l~~~~~~~~~~~  121 (250)
T d2h00a1          62 LRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQ  121 (250)
T ss_dssp             CCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCT
T ss_pred             cceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHHHHHHHHHHhCCCcceeeeeecc
Confidence            458999999999999999976  6799999999999999999999999999999887654

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=98.89  E-value=1.4e-09  Score=101.60  Aligned_cols=63  Identities=19%  Similarity=0.141  Sum_probs=57.1

Q ss_pred             hccCCCCeEEEecCCcchhHHHHhhc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccH
Q 046527           91 SQFRPGETICDMFAGIGPFAIPAAQK---GCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDA  153 (380)
Q Consensus        91 ~~i~~g~~VLDlfcGvG~fsl~aA~~---g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da  153 (380)
                      ..+.+|++|||+|||+|.+++.+|+.   +++|+++|.++++++.|++|++.+++.+++.+...|+
T Consensus        99 l~i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~d~  164 (266)
T d1o54a_          99 LDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDI  164 (266)
T ss_dssp             TTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCG
T ss_pred             hCCCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccccCcEEEeccc
Confidence            56899999999999999999999975   3599999999999999999999999987788887775

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

Probab=98.84  E-value=1.2e-08  Score=91.45  Aligned_cols=63  Identities=17%  Similarity=0.164  Sum_probs=57.3

Q ss_pred             CCeEEEecCCcchhHHHHhhcC--CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHHHHH
Q 046527           96 GETICDMFAGIGPFAIPAAQKG--CIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFIRQ  159 (380)
Q Consensus        96 g~~VLDlfcGvG~fsl~aA~~g--~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~l~~  159 (380)
                      +..|||+|||.|.+++.+|+..  ..++|+|+++.++..|.++++.+++.| +.++++|+..++..
T Consensus        30 ~PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~~l~N-v~~~~~Da~~l~~~   94 (204)
T d2fcaa1          30 NPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQN-VKLLNIDADTLTDV   94 (204)
T ss_dssp             CCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSS-EEEECCCGGGHHHH
T ss_pred             CceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHHHhccC-chhcccchhhhhcc
Confidence            4589999999999999999874  599999999999999999999999987 99999999887643

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.80  E-value=7.8e-09  Score=96.49  Aligned_cols=65  Identities=17%  Similarity=0.185  Sum_probs=55.6

Q ss_pred             HhccCCCCeEEEecCCcchhHHHHhhc-C--CEEEEEeCCHHHHHHHHHHHHHc--CCCCcEEEEeccHH
Q 046527           90 ISQFRPGETICDMFAGIGPFAIPAAQK-G--CIVFANDLNPDSVHYLKINAKVN--KVDNYVRAYNMDAR  154 (380)
Q Consensus        90 i~~i~~g~~VLDlfcGvG~fsl~aA~~-g--~~V~avDlnp~Aie~a~~Na~lN--~l~~ri~~~~~Da~  154 (380)
                      ...+.+|++|||+|||+|.+++.+|+. |  .+|+++|++++.++.|++|++..  ...+++.+.++|+.
T Consensus        91 ~l~i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~~  160 (264)
T d1i9ga_          91 EGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLA  160 (264)
T ss_dssp             HTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGG
T ss_pred             HhCCCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEecccc
Confidence            357899999999999999999999986 3  49999999999999999999864  33455888888764

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.80  E-value=7.4e-09  Score=99.29  Aligned_cols=66  Identities=20%  Similarity=0.239  Sum_probs=54.6

Q ss_pred             HhccCCCCeEEEecCCcchhHHHHhhc-C--CEEEEEeCCHHHHHHHHHHHHHc----------CCCCcEEEEeccHHH
Q 046527           90 ISQFRPGETICDMFAGIGPFAIPAAQK-G--CIVFANDLNPDSVHYLKINAKVN----------KVDNYVRAYNMDARE  155 (380)
Q Consensus        90 i~~i~~g~~VLDlfcGvG~fsl~aA~~-g--~~V~avDlnp~Aie~a~~Na~lN----------~l~~ri~~~~~Da~e  155 (380)
                      ...+.+|++|||+|||+|.+++.+|+. |  .+|+++|+++++++.|++|++..          ++.+++.+.++|+.+
T Consensus        93 ~l~i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~~~di~~  171 (324)
T d2b25a1          93 MMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISG  171 (324)
T ss_dssp             HHTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTC
T ss_pred             HhCCCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeEEecchhh
Confidence            357899999999999999999999986 3  49999999999999999999854          233457777777643

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.79  E-value=1.9e-08  Score=90.34  Aligned_cols=60  Identities=17%  Similarity=0.129  Sum_probs=52.3

Q ss_pred             ccCCCCeEEEecCCcchhHHHHhhcC--CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHH
Q 046527           92 QFRPGETICDMFAGIGPFAIPAAQKG--CIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAR  154 (380)
Q Consensus        92 ~i~~g~~VLDlfcGvG~fsl~aA~~g--~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~  154 (380)
                      .+++|++|||+|||+|.++.++|...  .+|+|+|++|.+++.|+++++..+   ++.++.+|+.
T Consensus        53 ~lkpg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~~~---ni~~i~~d~~  114 (209)
T d1nt2a_          53 KLRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERN---NIIPLLFDAS  114 (209)
T ss_dssp             CCCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCS---SEEEECSCTT
T ss_pred             CCCCCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhccC---CceEEEeecc
Confidence            47899999999999999999999763  499999999999999999988754   3888888764

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=98.78  E-value=5.8e-09  Score=96.50  Aligned_cols=65  Identities=14%  Similarity=0.025  Sum_probs=60.1

Q ss_pred             hccCCCCeEEEecCCcchhHHHHhhc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHH
Q 046527           91 SQFRPGETICDMFAGIGPFAIPAAQK-GCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDARE  155 (380)
Q Consensus        91 ~~i~~g~~VLDlfcGvG~fsl~aA~~-g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e  155 (380)
                      ..+.+|.+|||+|||+|.++..++++ +++|+|+|+++.+++.|++++...++.++++++++|+.+
T Consensus        63 ~~l~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~~  128 (282)
T d2o57a1          63 GVLQRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLE  128 (282)
T ss_dssp             TCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTS
T ss_pred             cCCCCCCEEEEeCCCCcHHHhhhhccCCcEEEEEeccchhhhhhhccccccccccccccccccccc
Confidence            35788999999999999999999976 789999999999999999999999999889999999864

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.76  E-value=5.9e-09  Score=93.68  Aligned_cols=62  Identities=21%  Similarity=0.250  Sum_probs=56.0

Q ss_pred             cCCCCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHH
Q 046527           93 FRPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREF  156 (380)
Q Consensus        93 i~~g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~  156 (380)
                      ..++.+|||+|||+|.+++.+++.|+.|+|+|+|+.+++.|++++..+++  +++++++|+.++
T Consensus        39 ~~~~~~iLDiGcGtG~~~~~l~~~~~~v~gvD~s~~mi~~a~~~~~~~~~--~i~~~~~d~~~l  100 (251)
T d1wzna1          39 KREVRRVLDLACGTGIPTLELAERGYEVVGLDLHEEMLRVARRKAKERNL--KIEFLQGDVLEI  100 (251)
T ss_dssp             SSCCCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC--CCEEEESCGGGC
T ss_pred             CCCCCEEEEeCCCCCccchhhcccceEEEEEeeccccccccccccccccc--cchheehhhhhc
Confidence            34567899999999999999999999999999999999999999998887  489999998653

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=98.67  E-value=1.3e-08  Score=91.84  Aligned_cols=61  Identities=15%  Similarity=0.071  Sum_probs=55.4

Q ss_pred             CCCCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHH
Q 046527           94 RPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREF  156 (380)
Q Consensus        94 ~~g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~  156 (380)
                      .++.+|||+|||+|.+++.+++.|.+|+|+|+|+.+++.|++++..+++  +++++++|+.++
T Consensus        36 ~~~~~vLDiGCG~G~~~~~l~~~g~~v~GvD~S~~ml~~A~~~~~~~~~--~v~~~~~d~~~~   96 (246)
T d1y8ca_          36 LVFDDYLDLACGTGNLTENLCPKFKNTWAVDLSQEMLSEAENKFRSQGL--KPRLACQDISNL   96 (246)
T ss_dssp             CCTTEEEEETCTTSTTHHHHGGGSSEEEEECSCHHHHHHHHHHHHHTTC--CCEEECCCGGGC
T ss_pred             CCCCeEEEEeCcCCHHHHHHHHhCCccEeeccchhhhhhccccccccCc--cceeeccchhhh
Confidence            4467999999999999999999999999999999999999999988887  389999998764

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=98.66  E-value=9.4e-09  Score=87.88  Aligned_cols=49  Identities=14%  Similarity=0.113  Sum_probs=45.6

Q ss_pred             ccCCCCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHc
Q 046527           92 QFRPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVN  140 (380)
Q Consensus        92 ~i~~g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~lN  140 (380)
                      .+.+|.+|||+|||+|..++.+|++|.+|+|+|+|+.+++.|++.++..
T Consensus        17 ~~~~~~rvLd~GCG~G~~a~~la~~G~~V~gvD~S~~~i~~a~~~~~~~   65 (201)
T d1pjza_          17 NVVPGARVLVPLCGKSQDMSWLSGQGYHVVGAELSEAAVERYFTERGEQ   65 (201)
T ss_dssp             CCCTTCEEEETTTCCSHHHHHHHHHCCEEEEEEECHHHHHHHHHHHCSC
T ss_pred             CCCCCCEEEEecCcCCHHHHHHHHcCCceEeecccHHHHHHHHHHhccc
Confidence            5788999999999999999999999999999999999999999988543

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.65  E-value=1.4e-08  Score=96.08  Aligned_cols=63  Identities=22%  Similarity=0.247  Sum_probs=56.7

Q ss_pred             cCCCCeEEEecCCcchhHHHHhhcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHH
Q 046527           93 FRPGETICDMFAGIGPFAIPAAQKGC-IVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREF  156 (380)
Q Consensus        93 i~~g~~VLDlfcGvG~fsl~aA~~g~-~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~  156 (380)
                      +.+|++|||+|||+|.+++.+|+.|+ +|+|+|.++. ...++++++.|++.++++++++|+.+.
T Consensus        31 ~~~~~~VLDiGcG~G~ls~~aa~~Ga~~V~avd~s~~-~~~a~~~~~~n~~~~~v~~~~~~~~~~   94 (316)
T d1oria_          31 LFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSI-SDYAVKIVKANKLDHVVTIIKGKVEEV   94 (316)
T ss_dssp             HHTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECSTT-HHHHHHHHHHTTCTTTEEEEESCTTTC
T ss_pred             cCCcCEEEEEecCCcHHHHHHHHhCCCEEEEEcCcHH-HhhhhhHHHHhCCccccceEeccHHHc
Confidence            45799999999999999999999986 8999999985 577889999999999999999998663

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.65  E-value=1.3e-07  Score=86.04  Aligned_cols=82  Identities=18%  Similarity=0.304  Sum_probs=60.5

Q ss_pred             eCCeEEEEccCceeecChHHHHHHHHH---h--ccCCCCeEEEecCCcchhHHHHhhc-C--CEEEEEeCCHHHHHHHHH
Q 046527           64 QYGATFKLDYSLVYWNSRLEHEHLRII---S--QFRPGETICDMFAGIGPFAIPAAQK-G--CIVFANDLNPDSVHYLKI  135 (380)
Q Consensus        64 E~G~~F~id~~~ff~n~rl~tE~~r~i---~--~i~~g~~VLDlfcGvG~fsl~aA~~-g--~~V~avDlnp~Aie~a~~  135 (380)
                      ..|..|+.      ||++.+.-...++   .  .+++|++|||+|||+|.++.++|.. |  .+|+|+|+++.+++.|+.
T Consensus        43 ~~~~e~R~------w~p~rSKlaa~i~~~l~~l~i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~  116 (227)
T d1g8aa_          43 WEGEEYRI------WNPNRSKLGAAIMNGLKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVP  116 (227)
T ss_dssp             ETTEEEEE------CCTTTCHHHHHHHTTCCCCCCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHH
T ss_pred             cCCeeEEE------ECCCccHHHHHHHccccccccCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHH
Confidence            35666765      6655332222222   2  4679999999999999999999986 3  499999999999999999


Q ss_pred             HHHHcCCCCcEEEEeccHH
Q 046527          136 NAKVNKVDNYVRAYNMDAR  154 (380)
Q Consensus       136 Na~lN~l~~ri~~~~~Da~  154 (380)
                      +++..+  + +..+..|+.
T Consensus       117 ~a~~~~--~-~~~i~~d~~  132 (227)
T d1g8aa_         117 IVEERR--N-IVPILGDAT  132 (227)
T ss_dssp             HHSSCT--T-EEEEECCTT
T ss_pred             HHHhcC--C-ceEEEEECC
Confidence            886543  3 666766654

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.65  E-value=4.3e-08  Score=85.85  Aligned_cols=62  Identities=23%  Similarity=0.309  Sum_probs=55.0

Q ss_pred             ccCCCCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHH
Q 046527           92 QFRPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDARE  155 (380)
Q Consensus        92 ~i~~g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e  155 (380)
                      .+.++.+|||+|||+|.+++.+++.+.+|+|+|+|+.+++.|++++...+..  +.++++|+.+
T Consensus        34 ~l~~~~~ILDiGcG~G~~~~~la~~~~~v~giD~S~~~i~~ak~~~~~~~~~--~~~~~~d~~~   95 (226)
T d1ve3a1          34 YMKKRGKVLDLACGVGGFSFLLEDYGFEVVGVDISEDMIRKAREYAKSRESN--VEFIVGDARK   95 (226)
T ss_dssp             SCCSCCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCC--CEEEECCTTS
T ss_pred             hcCCCCEEEEECCCcchhhhhHhhhhcccccccccccchhhhhhhhcccccc--cccccccccc
Confidence            3578899999999999999999999999999999999999999998877653  5778888765

>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=98.64  E-value=4.5e-08  Score=87.65  Aligned_cols=62  Identities=15%  Similarity=0.172  Sum_probs=55.8

Q ss_pred             CCCeEEEecCCcchhHHHHhhcC--CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHHH
Q 046527           95 PGETICDMFAGIGPFAIPAAQKG--CIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFI  157 (380)
Q Consensus        95 ~g~~VLDlfcGvG~fsl~aA~~g--~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~l  157 (380)
                      ....|||+|||.|.+.+.+|+..  ..++|+|+++..+..|.+.+..++++| +.++++|+.++.
T Consensus        31 ~~plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~~~l~N-i~~~~~da~~l~   94 (204)
T d1yzha1          31 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPN-IKLLWVDGSDLT   94 (204)
T ss_dssp             CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSS-EEEEECCSSCGG
T ss_pred             CCCeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhhhcccc-ceeeecCHHHHh
Confidence            34589999999999999999874  489999999999999999999999987 999999997653

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=98.62  E-value=2.5e-08  Score=89.02  Aligned_cols=64  Identities=13%  Similarity=0.102  Sum_probs=56.9

Q ss_pred             ccCCCCeEEEecCCcchhHHHHhhc----CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHH
Q 046527           92 QFRPGETICDMFAGIGPFAIPAAQK----GCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDARE  155 (380)
Q Consensus        92 ~i~~g~~VLDlfcGvG~fsl~aA~~----g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e  155 (380)
                      ..+++.+|||+|||+|..++.+++.    +++|+|+|+|+.+++.|+++++..+...++++.++|+.+
T Consensus        36 ~~~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~  103 (225)
T d1im8a_          36 FVTADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRH  103 (225)
T ss_dssp             HCCTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTTT
T ss_pred             hcCCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcccchhhhccchhhc
Confidence            3678999999999999999999863    569999999999999999999988888778999888754

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.61  E-value=3.9e-08  Score=92.39  Aligned_cols=65  Identities=17%  Similarity=0.146  Sum_probs=59.7

Q ss_pred             hccCCCCeEEEecCCcchhHHHHhhc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHH
Q 046527           91 SQFRPGETICDMFAGIGPFAIPAAQK-GCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDARE  155 (380)
Q Consensus        91 ~~i~~g~~VLDlfcGvG~fsl~aA~~-g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e  155 (380)
                      ..+++|++|||+|||.|.+++.+|+. |++|+|+.+|+.-+++|++.++..++.+++++..+|.++
T Consensus        58 l~l~~G~~VLDiGCG~G~~a~~~a~~~g~~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~d~~~  123 (285)
T d1kpga_          58 LGLQPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQ  123 (285)
T ss_dssp             TTCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGG
T ss_pred             cCCCCCCEEEEecCcchHHHHHHHhcCCcceEEEeccHHHHHHHHHHHHhhhhhhhhHHHHhhhhc
Confidence            45789999999999999999987764 899999999999999999999999999999999999854

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.61  E-value=3.6e-08  Score=92.66  Aligned_cols=64  Identities=17%  Similarity=0.171  Sum_probs=56.3

Q ss_pred             ccCCCCeEEEecCCcchhHHHHhhcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHH
Q 046527           92 QFRPGETICDMFAGIGPFAIPAAQKGC-IVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREF  156 (380)
Q Consensus        92 ~i~~g~~VLDlfcGvG~fsl~aA~~g~-~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~  156 (380)
                      .+.+|++|||+|||+|.+++.+|+.|+ +|+|+|.++.+. .++++++.|++.+++.++++|+.+.
T Consensus        32 ~~~~~~~VLDiGcG~G~lsl~aa~~Ga~~V~aid~s~~~~-~a~~~~~~~~~~~~i~~~~~~~~~l   96 (311)
T d2fyta1          32 HIFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILY-QAMDIIRLNKLEDTITLIKGKIEEV   96 (311)
T ss_dssp             GGTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESSTHHH-HHHHHHHHTTCTTTEEEEESCTTTS
T ss_pred             ccCCcCEEEEECCCCCHHHHHHHHcCCCEEEEEeCHHHHH-HHHHHHHHhCCCccceEEEeeHHHh
Confidence            456899999999999999999999986 899999999876 4677778888888899999998764

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.59  E-value=3.8e-08  Score=93.40  Aligned_cols=64  Identities=16%  Similarity=0.228  Sum_probs=57.7

Q ss_pred             ccCCCCeEEEecCCcchhHHHHhhcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHH
Q 046527           92 QFRPGETICDMFAGIGPFAIPAAQKGC-IVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREF  156 (380)
Q Consensus        92 ~i~~g~~VLDlfcGvG~fsl~aA~~g~-~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~  156 (380)
                      ...+|++|||+|||+|.+++.+|+.|+ +|+|+|.++ +++.|+++++.|++.++++++++|+.+.
T Consensus        35 ~~~~~~~VLDlGcGtG~ls~~aa~~Ga~~V~avd~s~-~~~~a~~~~~~~~~~~~i~~i~~~~~~l   99 (328)
T d1g6q1_          35 DLFKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSS-IIEMAKELVELNGFSDKITLLRGKLEDV   99 (328)
T ss_dssp             HHHTTCEEEEETCTTSHHHHHHHHTCCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTS
T ss_pred             ccCCcCEEEEeCCCCCHHHHHHHHhCCCEEEEEeCCH-HHHHHHHHHHHhCccccceEEEeehhhc
Confidence            345799999999999999999999987 999999997 5689999999999999999999998754

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=98.57  E-value=5.4e-08  Score=88.42  Aligned_cols=63  Identities=17%  Similarity=0.164  Sum_probs=56.7

Q ss_pred             ccCCCCeEEEecCCcchhHHHHhhcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHH
Q 046527           92 QFRPGETICDMFAGIGPFAIPAAQKGC-IVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAR  154 (380)
Q Consensus        92 ~i~~g~~VLDlfcGvG~fsl~aA~~g~-~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~  154 (380)
                      ...++++|||+|||+|..+..+++.+. +|+|+|+|+.+++.|++.+...+...++.++++|+.
T Consensus        21 ~~~~~~~VLDlGCG~G~~~~~~~~~~~~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~   84 (252)
T d1ri5a_          21 YTKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSY   84 (252)
T ss_dssp             HCCTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTT
T ss_pred             hCCCcCEEEEecccCcHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchh
Confidence            357899999999999999999998775 899999999999999999988888777999999974

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.56  E-value=5.2e-08  Score=91.14  Aligned_cols=65  Identities=15%  Similarity=0.161  Sum_probs=59.5

Q ss_pred             ccCCCCeEEEecCCcchhHHHHhhc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHH
Q 046527           92 QFRPGETICDMFAGIGPFAIPAAQK-GCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREF  156 (380)
Q Consensus        92 ~i~~g~~VLDlfcGvG~fsl~aA~~-g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~  156 (380)
                      .+++|++|||+|||.|.+++.+++. |++|+|+|+|+..+++|++.++..++.+++.+...|.+++
T Consensus        49 ~l~~g~~VLDiGCG~G~~a~~~a~~~g~~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~d~~~~  114 (280)
T d2fk8a1          49 DLKPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDF  114 (280)
T ss_dssp             CCCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGC
T ss_pred             CCCCCCEEEEecCCchHHHHHHHHhCceeEEEecchHHHHHHHHHHHHhhccccchhhhhhhhhhh
Confidence            5789999999999999999999876 8999999999999999999999999998899998887643

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=98.54  E-value=1.7e-07  Score=83.92  Aligned_cols=65  Identities=17%  Similarity=0.117  Sum_probs=58.0

Q ss_pred             HhccCCCCeEEEecCCcchhHHHHhhc-C--CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHH
Q 046527           90 ISQFRPGETICDMFAGIGPFAIPAAQK-G--CIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDARE  155 (380)
Q Consensus        90 i~~i~~g~~VLDlfcGvG~fsl~aA~~-g--~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e  155 (380)
                      ...+++|++|||+|||+|.++..+|+. +  .+|+++|+++++++.|++|++..++.+ +.++++|+.+
T Consensus        70 ~l~l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~n-~~~~~~d~~~  137 (213)
T d1dl5a1          70 WVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIEN-VIFVCGDGYY  137 (213)
T ss_dssp             HTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCS-EEEEESCGGG
T ss_pred             hhhccccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcccc-cccccCchHH
Confidence            346899999999999999999999875 3  489999999999999999999999987 7888998764

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.52  E-value=6.7e-08  Score=86.68  Aligned_cols=66  Identities=9%  Similarity=0.052  Sum_probs=54.8

Q ss_pred             hccCCCCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcC----------------CCCcEEEEeccHH
Q 046527           91 SQFRPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVNK----------------VDNYVRAYNMDAR  154 (380)
Q Consensus        91 ~~i~~g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~lN~----------------l~~ri~~~~~Da~  154 (380)
                      ....++.+|||+|||.|..++.+|+.|.+|+|+|+|+.|++.|++......                ....++++++|+.
T Consensus        41 l~~~~~~rvLd~GCG~G~~a~~LA~~G~~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~  120 (229)
T d2bzga1          41 LKGKSGLRVFFPLCGKAVEMKWFADRGHSVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCCSIF  120 (229)
T ss_dssp             HTTCCSCEEEETTCTTCTHHHHHHHTTCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCGG
T ss_pred             cCCCCCCEEEEeCCCCcHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCcEEEEEcchh
Confidence            446788999999999999999999999999999999999999998765321                1235888888876


Q ss_pred             HH
Q 046527          155 EF  156 (380)
Q Consensus       155 e~  156 (380)
                      +.
T Consensus       121 ~l  122 (229)
T d2bzga1         121 DL  122 (229)
T ss_dssp             GG
T ss_pred             hc
Confidence            54

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=98.52  E-value=5e-07  Score=82.02  Aligned_cols=82  Identities=17%  Similarity=0.214  Sum_probs=60.6

Q ss_pred             CCeEEEEccCceeecCh---HHHHHHHHHh--ccCCCCeEEEecCCcchhHHHHhhcC--CEEEEEeCCHHHHHHHHHHH
Q 046527           65 YGATFKLDYSLVYWNSR---LEHEHLRIIS--QFRPGETICDMFAGIGPFAIPAAQKG--CIVFANDLNPDSVHYLKINA  137 (380)
Q Consensus        65 ~G~~F~id~~~ff~n~r---l~tE~~r~i~--~i~~g~~VLDlfcGvG~fsl~aA~~g--~~V~avDlnp~Aie~a~~Na  137 (380)
                      .+..|+.      |+++   +++..++-+.  .+++|++|||+|||+|.++.++|..+  ..|+|+|++|.+++.|++.+
T Consensus        45 ~~~e~r~------w~p~rsklaA~i~~gl~~l~ikpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a  118 (230)
T d1g8sa_          45 GDEEYRI------WNPNKSKLAAAIIKGLKVMPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDAC  118 (230)
T ss_dssp             TTEEEEE------CCTTTCHHHHHHHTTCCCCCCCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHT
T ss_pred             CCceeee------ECCCccHHHHHHHhhHHhCCCCCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHH
Confidence            4555664      5544   4443333333  36899999999999999999999875  49999999999999999987


Q ss_pred             HHcCCCCcEEEEeccHHH
Q 046527          138 KVNKVDNYVRAYNMDARE  155 (380)
Q Consensus       138 ~lN~l~~ri~~~~~Da~e  155 (380)
                      ..++   .+.++.+|+..
T Consensus       119 ~~~~---ni~~i~~d~~~  133 (230)
T d1g8sa_         119 AERE---NIIPILGDANK  133 (230)
T ss_dssp             TTCT---TEEEEECCTTC
T ss_pred             hhhc---ccceEEEeecc
Confidence            6543   36677777653

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.51  E-value=1.6e-07  Score=88.37  Aligned_cols=64  Identities=16%  Similarity=0.027  Sum_probs=59.0

Q ss_pred             hccCCCCeEEEecCCcchhHHHHhh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHH
Q 046527           91 SQFRPGETICDMFAGIGPFAIPAAQ-KGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAR  154 (380)
Q Consensus        91 ~~i~~g~~VLDlfcGvG~fsl~aA~-~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~  154 (380)
                      ..+++|++|||+|||.|.+++.+|+ .|++|+|+++|+..++.+++.++..++.+++.+...|.+
T Consensus        57 l~l~~G~~VLDiGCG~G~~~~~~a~~~g~~v~git~s~~q~~~a~~~~~~~~l~~~v~~~~~d~~  121 (291)
T d1kpia_          57 LNLEPGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWE  121 (291)
T ss_dssp             TCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHSCCSSCEEEEECCGG
T ss_pred             cCCCCCCEEEEecCcchHHHHHHHHhcCcceeeccchHHHHHHHHHHHHhhccchhhhhhhhccc
Confidence            4678999999999999999998885 589999999999999999999999999999999999864

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.48  E-value=4.6e-08  Score=87.13  Aligned_cols=63  Identities=16%  Similarity=-0.019  Sum_probs=54.7

Q ss_pred             cCCCCeEEEecCCcchhHHHHhhc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHH
Q 046527           93 FRPGETICDMFAGIGPFAIPAAQK-GCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREF  156 (380)
Q Consensus        93 i~~g~~VLDlfcGvG~fsl~aA~~-g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~  156 (380)
                      ..++.+|||+|||+|.++..++.. +.+|+|+|+|+.+++.|++++...+..+ ++++++|+.++
T Consensus        58 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~ak~~~~~~~~~~-~~f~~~d~~~~  121 (222)
T d2ex4a1          58 KTGTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRV-RNYFCCGLQDF  121 (222)
T ss_dssp             CCCCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGGGGE-EEEEECCGGGC
T ss_pred             CCCCCEEEEeccCCCHhhHHHHHhcCCEEEEeecCHHHhhccccccccccccc-ccccccccccc
Confidence            356789999999999999988755 4599999999999999999998877765 89999999874

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=98.42  E-value=5.2e-07  Score=81.34  Aligned_cols=65  Identities=25%  Similarity=0.281  Sum_probs=59.7

Q ss_pred             HhccCCCCeEEEecCCcchhHHHHhhc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHH
Q 046527           90 ISQFRPGETICDMFAGIGPFAIPAAQK-GCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDARE  155 (380)
Q Consensus        90 i~~i~~g~~VLDlfcGvG~fsl~aA~~-g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e  155 (380)
                      ...+++|++|||+|||+|..+..+|+. |.+|+++|.+++.++.|++|++..++.+ +.++++|+.+
T Consensus        73 ~L~l~~g~~VLeIGsGsGY~taila~l~g~~V~~ie~~~~l~~~a~~~l~~~g~~n-v~~~~gd~~~  138 (215)
T d1jg1a_          73 IANLKPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGVKN-VHVILGDGSK  138 (215)
T ss_dssp             HHTCCTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTCCS-EEEEESCGGG
T ss_pred             hhccCccceEEEecCCCChhHHHHHHhhCceeEEEeccHHHHHHHHHHHHHcCCce-eEEEECcccc
Confidence            456899999999999999999999976 6689999999999999999999999987 9999999865

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=98.40  E-value=3.1e-07  Score=81.84  Aligned_cols=63  Identities=6%  Similarity=0.018  Sum_probs=53.3

Q ss_pred             HHHhccCCCCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHH
Q 046527           88 RIISQFRPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDARE  155 (380)
Q Consensus        88 r~i~~i~~g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e  155 (380)
                      +.+....++.+|||+|||+|.++..+++.|.+|+|+|+|+++++.|+.+.     .+.+.++++|+.+
T Consensus        13 ~~~~~~~~~~~VLDiGcG~G~~~~~l~~~g~~v~giD~s~~~i~~a~~~~-----~~~~~~~~~~~~~   75 (225)
T d2p7ia1          13 RAFTPFFRPGNLLELGSFKGDFTSRLQEHFNDITCVEASEEAISHAQGRL-----KDGITYIHSRFED   75 (225)
T ss_dssp             HHHGGGCCSSCEEEESCTTSHHHHHHTTTCSCEEEEESCHHHHHHHHHHS-----CSCEEEEESCGGG
T ss_pred             HHhhhhCCCCcEEEEeCCCcHHHHHHHHcCCeEEEEeCcHHHhhhhhccc-----ccccccccccccc
Confidence            44455567789999999999999999999999999999999999998764     2348899998765

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.35  E-value=7.1e-07  Score=80.60  Aligned_cols=64  Identities=20%  Similarity=0.104  Sum_probs=55.5

Q ss_pred             ccCCCCeEEEecCCcchhHHHHhhc---CCEEEEEeCCHHHHHHHHHHHHHcCCC----CcEEEEeccHHH
Q 046527           92 QFRPGETICDMFAGIGPFAIPAAQK---GCIVFANDLNPDSVHYLKINAKVNKVD----NYVRAYNMDARE  155 (380)
Q Consensus        92 ~i~~g~~VLDlfcGvG~fsl~aA~~---g~~V~avDlnp~Aie~a~~Na~lN~l~----~ri~~~~~Da~e  155 (380)
                      .+++|++|||+|||+|.++..+|+.   ..+|+++|+++++++.|++|++..++.    +.+.+..+|+.+
T Consensus        73 ~l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~~~  143 (224)
T d1i1na_          73 QLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRM  143 (224)
T ss_dssp             TSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGG
T ss_pred             ccCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEeeccc
Confidence            6789999999999999999988875   349999999999999999999877653    358899999853

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

Probab=98.32  E-value=3.5e-07  Score=84.75  Aligned_cols=62  Identities=15%  Similarity=0.022  Sum_probs=54.4

Q ss_pred             ccCCCCeEEEecCCcchhHHHHhhc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHH
Q 046527           92 QFRPGETICDMFAGIGPFAIPAAQK---GCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDARE  155 (380)
Q Consensus        92 ~i~~g~~VLDlfcGvG~fsl~aA~~---g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e  155 (380)
                      .+.++.+|||+|||+|.+++.++..   +.+|+|+|+++.+++.|++++...++  .+++.++|+.+
T Consensus        24 ~~~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~--~~~f~~~d~~~   88 (281)
T d2gh1a1          24 KITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPY--DSEFLEGDATE   88 (281)
T ss_dssp             CCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSS--EEEEEESCTTT
T ss_pred             ccCCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhcccccccc--ccccccccccc
Confidence            4667889999999999999999974   56999999999999999999988776  48899999754

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=98.32  E-value=1e-06  Score=79.82  Aligned_cols=63  Identities=14%  Similarity=0.145  Sum_probs=55.8

Q ss_pred             HhccCCCCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHH
Q 046527           90 ISQFRPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDARE  155 (380)
Q Consensus        90 i~~i~~g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e  155 (380)
                      ...+++|++|||+|||+|.++..+|+.+.+|+++|.++.+++.|++|...  .. ++.++.+|+..
T Consensus        65 ~L~l~~g~~VLdIG~GsGy~ta~La~l~~~V~aiE~~~~~~~~A~~~~~~--~~-nv~~~~~d~~~  127 (224)
T d1vbfa_          65 ELDLHKGQKVLEIGTGIGYYTALIAEIVDKVVSVEINEKMYNYASKLLSY--YN-NIKLILGDGTL  127 (224)
T ss_dssp             HTTCCTTCEEEEECCTTSHHHHHHHHHSSEEEEEESCHHHHHHHHHHHTT--CS-SEEEEESCGGG
T ss_pred             HhhhcccceEEEecCCCCHHHHHHHHHhcccccccccHHHHHHHHHHHhc--cc-ccccccCchhh
Confidence            34689999999999999999999999999999999999999999998753  34 49999999854

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.30  E-value=6.5e-07  Score=82.82  Aligned_cols=51  Identities=16%  Similarity=0.145  Sum_probs=46.5

Q ss_pred             cCCCCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCC
Q 046527           93 FRPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKVD  143 (380)
Q Consensus        93 i~~g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~lN~l~  143 (380)
                      ..++.+|||+|||+|.+++.+|+.|.+|+|+|+|+.+++.|+++...++..
T Consensus        54 ~~~~~~vLD~GcG~G~~~~~la~~g~~v~gvD~S~~ml~~A~~~~~~~~~~  104 (292)
T d1xvaa_          54 QHGCHRVLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYALKERWNRRKE  104 (292)
T ss_dssp             HTTCCEEEESSCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTTS
T ss_pred             hcCCCEEEEecCCCcHHHHHHHHcCCeeeeccCchHHHHHHHHHHHhcccc
Confidence            356789999999999999999999999999999999999999999877654

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=98.26  E-value=6.1e-07  Score=79.27  Aligned_cols=45  Identities=13%  Similarity=0.211  Sum_probs=41.8

Q ss_pred             ccCCCCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHHH
Q 046527           92 QFRPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKIN  136 (380)
Q Consensus        92 ~i~~g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~N  136 (380)
                      ...++.+|||+|||+|.++..+++.|++|+|+|+|+.+++.|+++
T Consensus        39 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~l~~a~~~   83 (246)
T d2avna1          39 YLKNPCRVLDLGGGTGKWSLFLQERGFEVVLVDPSKEMLEVAREK   83 (246)
T ss_dssp             HCCSCCEEEEETCTTCHHHHHHHTTTCEEEEEESCHHHHHHHHHH
T ss_pred             hcCCCCEEEEECCCCchhcccccccceEEEEeecccccccccccc
Confidence            456778999999999999999999999999999999999999976

>d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Bacillus subtilis, Ermc' [TaxId: 1423]

Probab=98.24  E-value=6.6e-07  Score=81.62  Aligned_cols=63  Identities=17%  Similarity=0.221  Sum_probs=55.1

Q ss_pred             hccCCCCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHH
Q 046527           91 SQFRPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREF  156 (380)
Q Consensus        91 ~~i~~g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~  156 (380)
                      ..+.++++||++|||.|.++..++..+++|+|+|+++..++.++++...  .. +++++++|+.++
T Consensus        17 ~~~~~~d~VlEIGpG~G~LT~~Ll~~~~~v~avE~D~~l~~~l~~~~~~--~~-n~~i~~~D~l~~   79 (235)
T d1qama_          17 IRLNEHDNIFEIGSGKGHFTLELVQRCNFVTAIEIDHKLCKTTENKLVD--HD-NFQVLNKDILQF   79 (235)
T ss_dssp             CCCCTTCEEEEECCTTSHHHHHHHHHSSEEEEECSCHHHHHHHHHHTTT--CC-SEEEECCCGGGC
T ss_pred             cCCCCCCeEEEECCCchHHHHHHHhCcCceEEEeeccchHHHHHHHhhc--cc-chhhhhhhhhhc
Confidence            3567899999999999999999999999999999999999999987643  23 599999999754

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Catechol O-methyltransferase, COMT
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.17  E-value=2.5e-06  Score=76.46  Aligned_cols=68  Identities=19%  Similarity=0.208  Sum_probs=62.2

Q ss_pred             CCCCeEEEecCCcchhHHHHhhc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHHHHHHh
Q 046527           94 RPGETICDMFAGIGPFAIPAAQK---GCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFIRQLM  161 (380)
Q Consensus        94 ~~g~~VLDlfcGvG~fsl~aA~~---g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~l~~l~  161 (380)
                      .+.++||++|||+|..++.+|..   +.+|+++|.+++.++.|++|++..|+.++|+++.+|+.+.+..+.
T Consensus        55 ~kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl~~~i~l~~Gd~~e~l~~l~  125 (214)
T d2cl5a1          55 YSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQDLIPQLK  125 (214)
T ss_dssp             HCCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGHH
T ss_pred             hCCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCCCccceeeeccccccccchh
Confidence            34579999999999999999874   569999999999999999999999999999999999999987765

>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.14  E-value=1.2e-05  Score=70.81  Aligned_cols=64  Identities=17%  Similarity=0.239  Sum_probs=55.0

Q ss_pred             ccCCCCeEEEecCCcchhHHHHhhc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHHH
Q 046527           92 QFRPGETICDMFAGIGPFAIPAAQK--GCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFI  157 (380)
Q Consensus        92 ~i~~g~~VLDlfcGvG~fsl~aA~~--g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~l  157 (380)
                      ...+|.+++|++||+|..+..++.+  +++|+|+|.++++++.++++.+..  .+++.+++++..++-
T Consensus        20 ~~~~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~~~--~~r~~~~~~~f~~~~   85 (192)
T d1m6ya2          20 KPEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEF--SDRVSLFKVSYREAD   85 (192)
T ss_dssp             CCCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGG--TTTEEEEECCGGGHH
T ss_pred             CCCCCCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhccc--cccccchhHHHhhHH
Confidence            4678999999999999999999876  469999999999999999988654  456999999876653

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.11  E-value=2.1e-06  Score=76.87  Aligned_cols=64  Identities=11%  Similarity=-0.060  Sum_probs=54.3

Q ss_pred             cCCCCeEEEecCCcchhHHHHhhcC-CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHHHH
Q 046527           93 FRPGETICDMFAGIGPFAIPAAQKG-CIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFIR  158 (380)
Q Consensus        93 i~~g~~VLDlfcGvG~fsl~aA~~g-~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~l~  158 (380)
                      ..+|.+|||+|||+|.++..+++.+ ++|+++|+||.+++.|+++++..+.  .+.++.+|+.....
T Consensus        51 ~~~g~~VLdIGcG~G~~a~~~a~~~~~~v~~id~s~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~  115 (229)
T d1zx0a1          51 SSKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTH--KVIPLKGLWEDVAP  115 (229)
T ss_dssp             TTTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCSS--EEEEEESCHHHHGG
T ss_pred             ccCCCeEEEeeccchHHHHHHHHcCCCeEEEeCCCHHHHHHHHHHhhhccc--cccccccccccccc
Confidence            3678899999999999999999875 5899999999999999999876543  47888888877543

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.11  E-value=2.3e-06  Score=81.14  Aligned_cols=66  Identities=11%  Similarity=0.105  Sum_probs=54.5

Q ss_pred             hccCCCCeEEEecCCcchhHHHHhhc-CC-EEEEEeCCHHHHHHHHHHHHHc-------CCC-CcEEEEeccHHHH
Q 046527           91 SQFRPGETICDMFAGIGPFAIPAAQK-GC-IVFANDLNPDSVHYLKINAKVN-------KVD-NYVRAYNMDAREF  156 (380)
Q Consensus        91 ~~i~~g~~VLDlfcGvG~fsl~aA~~-g~-~V~avDlnp~Aie~a~~Na~lN-------~l~-~ri~~~~~Da~e~  156 (380)
                      ..++++++|||+|||+|.+++.+|+. ++ +|+|+|+++.+++.|+++++..       |+. ..++++++|+.+.
T Consensus       147 ~~l~~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~gd~~~~  222 (328)
T d1nw3a_         147 IKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLSE  222 (328)
T ss_dssp             SCCCTTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEECCTTSH
T ss_pred             cCCCCCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEECccccc
Confidence            35788999999999999999998875 44 8999999999999999887653       222 3599999998654

>d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Probable dimethyladenosine transferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.10  E-value=2.9e-06  Score=79.19  Aligned_cols=66  Identities=20%  Similarity=0.268  Sum_probs=59.5

Q ss_pred             HhccCCCCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHH
Q 046527           90 ISQFRPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDARE  155 (380)
Q Consensus        90 i~~i~~g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e  155 (380)
                      ...+.+++.||++|+|.|.++..+++.+++|+++|+++..++.+++....+...++++++++|+.+
T Consensus        16 ~~~~~~~d~VlEIGPG~G~LT~~Ll~~~~~v~aiE~D~~l~~~L~~~~~~~~~~~~~~~i~~D~l~   81 (278)
T d1zq9a1          16 KAALRPTDVVLEVGPGTGNMTVKLLEKAKKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLK   81 (278)
T ss_dssp             HTCCCTTCEEEEECCTTSTTHHHHHHHSSEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTT
T ss_pred             HhCCCCCCEEEEECCCchHHHHHHHhcCCcEEEEEEccchhHHHHHHHhhhccccchhhhHHHHhh
Confidence            346778999999999999999999999999999999999999999998777666679999999864

>d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Hypothetical protein Lmo1582
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.10  E-value=1.6e-06  Score=81.45  Aligned_cols=75  Identities=11%  Similarity=0.059  Sum_probs=55.6

Q ss_pred             eeecChHHHHHH-HHH---hccCCCCeEEEecCCcchhHHHHhhc----C---CEEEEEeCCHHHHHHHHHHHHHcCCCC
Q 046527           76 VYWNSRLEHEHL-RII---SQFRPGETICDMFAGIGPFAIPAAQK----G---CIVFANDLNPDSVHYLKINAKVNKVDN  144 (380)
Q Consensus        76 ff~n~rl~tE~~-r~i---~~i~~g~~VLDlfcGvG~fsl~aA~~----g---~~V~avDlnp~Aie~a~~Na~lN~l~~  144 (380)
                      .|+.|+..++.+ .++   ....++.+|||++||+|.|.+.+...    .   ..++|+|+++.++..|+.|+..++...
T Consensus        94 ~~~TP~~i~~~m~~l~~~~~~~~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~~~~  173 (328)
T d2f8la1          94 HQMTPDSIGFIVAYLLEKVIQKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKM  173 (328)
T ss_dssp             GCCCCHHHHHHHHHHHHHHHTTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCC
T ss_pred             eEECcHHHHHHHHHHHHHHhCCCCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhhhhh
Confidence            345777665543 222   23456789999999999999988742    1   279999999999999999999887654


Q ss_pred             cEEEEecc
Q 046527          145 YVRAYNMD  152 (380)
Q Consensus       145 ri~~~~~D  152 (380)
                        .+.++|
T Consensus       174 --~~~~~d  179 (328)
T d2f8la1         174 --TLLHQD  179 (328)
T ss_dssp             --EEEESC
T ss_pred             --hhhccc
Confidence              445443

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.09  E-value=9e-06  Score=73.10  Aligned_cols=85  Identities=11%  Similarity=0.031  Sum_probs=72.6

Q ss_pred             ecChHHHHHHHHHhccCCCCeEEEecCCcchhHHHHhhc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHH
Q 046527           78 WNSRLEHEHLRIISQFRPGETICDMFAGIGPFAIPAAQK---GCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAR  154 (380)
Q Consensus        78 ~n~rl~tE~~r~i~~i~~g~~VLDlfcGvG~fsl~aA~~---g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~  154 (380)
                      +.++.....+..+....+.++||++|||+|.-++.+|..   +.+|+++|.+++..+.|++|++..|+.++++++.+|+.
T Consensus        42 ~i~~~~g~lL~~L~~~~~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~Gda~  121 (219)
T d2avda1          42 MMTCEQAQLLANLARLIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPAL  121 (219)
T ss_dssp             SCCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHH
T ss_pred             ccCHHHHHHHHHHHHccCCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCccceEEEEEeehh
Confidence            344544455555666677789999999999999999975   45999999999999999999999999999999999999


Q ss_pred             HHHHHHhc
Q 046527          155 EFIRQLMT  162 (380)
Q Consensus       155 e~l~~l~~  162 (380)
                      +.+.++..
T Consensus       122 e~l~~~~~  129 (219)
T d2avda1         122 ETLDELLA  129 (219)
T ss_dssp             HHHHHHHH
T ss_pred             hcchhhhh
Confidence            99988763

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.02  E-value=7.3e-06  Score=73.89  Aligned_cols=63  Identities=19%  Similarity=0.256  Sum_probs=53.5

Q ss_pred             ccCCCCeEEEecCCcchhHHHHhhc----C----CEEEEEeCCHHHHHHHHHHHHHc-----CCCCcEEEEeccHHH
Q 046527           92 QFRPGETICDMFAGIGPFAIPAAQK----G----CIVFANDLNPDSVHYLKINAKVN-----KVDNYVRAYNMDARE  155 (380)
Q Consensus        92 ~i~~g~~VLDlfcGvG~fsl~aA~~----g----~~V~avDlnp~Aie~a~~Na~lN-----~l~~ri~~~~~Da~e  155 (380)
                      .+++|++|||+|||+|.++..+++.    |    .+|+++|.+++.++.+++|+..+     ++.+ +.++++|+.+
T Consensus        77 ~l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~n-v~~~~~d~~~  152 (223)
T d1r18a_          77 HLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQ-LLIVEGDGRK  152 (223)
T ss_dssp             TCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTS-EEEEESCGGG
T ss_pred             ccCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccE-EEEEeccccc
Confidence            6789999999999999999988865    2    38999999999999999997654     3444 9999999864

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=98.01  E-value=4.1e-06  Score=75.96  Aligned_cols=63  Identities=17%  Similarity=0.175  Sum_probs=55.5

Q ss_pred             ccCCCCeEEEecCCcchhHHHHhhcC--CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHH
Q 046527           92 QFRPGETICDMFAGIGPFAIPAAQKG--CIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDARE  155 (380)
Q Consensus        92 ~i~~g~~VLDlfcGvG~fsl~aA~~g--~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e  155 (380)
                      .+.+..+|||+|||+|.+++.++++.  .+++++|+ |.+++.+++++...++.++++++.+|+.+
T Consensus        77 d~~~~~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~rv~~~~~D~~~  141 (253)
T d1tw3a2          77 DWTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFE  141 (253)
T ss_dssp             CCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTS
T ss_pred             CCccCCEEEEeCCCCCHHHHHHHHhcceeEEEEccC-HHHHHHHHHHHHHhhcccchhhccccchh
Confidence            34567899999999999999999874  58999998 77999999999999999899999999743

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.94  E-value=1.9e-06  Score=77.10  Aligned_cols=50  Identities=18%  Similarity=0.128  Sum_probs=44.1

Q ss_pred             CCCCeEEEecCCcchhHHHHhhcCC-EEEEEeCCHHHHHHHHHHHHHcCCC
Q 046527           94 RPGETICDMFAGIGPFAIPAAQKGC-IVFANDLNPDSVHYLKINAKVNKVD  143 (380)
Q Consensus        94 ~~g~~VLDlfcGvG~fsl~aA~~g~-~V~avDlnp~Aie~a~~Na~lN~l~  143 (380)
                      .+|.+|||+|||+|.+++.++..+. .|+|+|+++.+++.|+++++.++..
T Consensus        50 ~~g~~vLDlGcG~G~~~~~~~~~~~~~v~giD~S~~~i~~a~~~~~~~~~~  100 (257)
T d2a14a1          50 LQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGA  100 (257)
T ss_dssp             CCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCTTC
T ss_pred             CCCCEEEEECCCCCHhHHHHhccccCcEEEecCCHHHHHHHHHHHhhcccc
Confidence            4678999999999999988887766 7999999999999999999877654

>d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: High level kasugamycin resistance protein KsgA
species: Escherichia coli [TaxId: 562]

Probab=97.94  E-value=6.7e-06  Score=75.60  Aligned_cols=76  Identities=14%  Similarity=0.231  Sum_probs=59.6

Q ss_pred             ecChHHHHHHHHHhccCCCCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHH
Q 046527           78 WNSRLEHEHLRIISQFRPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREF  156 (380)
Q Consensus        78 ~n~rl~tE~~r~i~~i~~g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~  156 (380)
                      ..+....+.......+.+++.||++|||.|.++..+++.+.+|+|+|+++..++.+++....   .++++++++|+.++
T Consensus         4 L~d~~~~~~Iv~~~~~~~~d~vlEIGpG~G~LT~~Ll~~~~~v~aiEiD~~l~~~L~~~~~~---~~~~~ii~~D~l~~   79 (252)
T d1qyra_           4 LNDQFVIDSIVSAINPQKGQAMVEIGPGLAALTEPVGERLDQLTVIELDRDLAARLQTHPFL---GPKLTIYQQDAMTF   79 (252)
T ss_dssp             ECCHHHHHHHHHHHCCCTTCCEEEECCTTTTTHHHHHTTCSCEEEECCCHHHHHHHHTCTTT---GGGEEEECSCGGGC
T ss_pred             cCCHHHHHHHHHhcCCCCCCEEEEECCCchHHHHHHHccCCceEEEEeccchhHHHHHHhhh---ccchhHHhhhhhhh
Confidence            33443334433334567899999999999999999999999999999999999999874322   24699999999865

>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Possible histamine N-methyltransferase TM1293
species: Thermotoga maritima [TaxId: 2336]

Probab=97.92  E-value=4.4e-06  Score=72.58  Aligned_cols=57  Identities=18%  Similarity=0.203  Sum_probs=46.9

Q ss_pred             HHHHhccCCCCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHH
Q 046527           87 LRIISQFRPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDARE  155 (380)
Q Consensus        87 ~r~i~~i~~g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e  155 (380)
                      ++.+..+.++.+|||+|||+|.++..++    +++|+|+|+.+++.++++        .+.++++|+.+
T Consensus        28 ~~~~~~~~~~~~vLDiGcG~G~~~~~~~----~~~giD~s~~~~~~a~~~--------~~~~~~~d~~~   84 (208)
T d1vlma_          28 LQAVKCLLPEGRGVEIGVGTGRFAVPLK----IKIGVEPSERMAEIARKR--------GVFVLKGTAEN   84 (208)
T ss_dssp             HHHHHHHCCSSCEEEETCTTSTTHHHHT----CCEEEESCHHHHHHHHHT--------TCEEEECBTTB
T ss_pred             HHHHHhhCCCCeEEEECCCCcccccccc----eEEEEeCChhhccccccc--------ccccccccccc
Confidence            3555667778899999999999998874    479999999999998864        27899999854

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.91  E-value=6.4e-06  Score=80.69  Aligned_cols=49  Identities=24%  Similarity=0.489  Sum_probs=44.5

Q ss_pred             ccCCCCeEEEecCCcchhHHHHhhc-CC-EEEEEeCCHHHHHHHHHHHHHc
Q 046527           92 QFRPGETICDMFAGIGPFAIPAAQK-GC-IVFANDLNPDSVHYLKINAKVN  140 (380)
Q Consensus        92 ~i~~g~~VLDlfcGvG~fsl~aA~~-g~-~V~avDlnp~Aie~a~~Na~lN  140 (380)
                      .+++|++|||+|||+|.+++.+|.. ++ +|+|+|+++.+++.|+++++..
T Consensus       213 ~Lkpgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~  263 (406)
T d1u2za_         213 QLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEEL  263 (406)
T ss_dssp             TCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHH
T ss_pred             CCCCCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHH
Confidence            5789999999999999999999875 55 8999999999999999998754

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

Probab=97.90  E-value=4.2e-06  Score=76.36  Aligned_cols=60  Identities=12%  Similarity=-0.122  Sum_probs=49.3

Q ss_pred             CCCCeEEEecCCcchhHHHHhhc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHH
Q 046527           94 RPGETICDMFAGIGPFAIPAAQK-GCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREF  156 (380)
Q Consensus        94 ~~g~~VLDlfcGvG~fsl~aA~~-g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~  156 (380)
                      .++.+|||+|||+|.++..++.. +..|+++|.++.+++.|+++....   +.++++++|+.++
T Consensus        92 ~~~~~vLD~GcG~G~~t~~ll~~~~~~v~~vD~s~~~l~~a~~~~~~~---~~~~~~~~d~~~~  152 (254)
T d1xtpa_          92 HGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGM---PVGKFILASMETA  152 (254)
T ss_dssp             CCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTTS---SEEEEEESCGGGC
T ss_pred             CCCCeEEEecccCChhhHHHHhhcCceEEEEcCCHHHHHhhhcccccc---ccceeEEcccccc
Confidence            35679999999999999987765 558999999999999999876432   2488999998653

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=97.90  E-value=2.1e-05  Score=71.03  Aligned_cols=83  Identities=14%  Similarity=0.096  Sum_probs=70.5

Q ss_pred             ChHHHHHHHHHhccCCCCeEEEecCCcchhHHHHhhc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHH
Q 046527           80 SRLEHEHLRIISQFRPGETICDMFAGIGPFAIPAAQK---GCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREF  156 (380)
Q Consensus        80 ~rl~tE~~r~i~~i~~g~~VLDlfcGvG~fsl~aA~~---g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~  156 (380)
                      ...+...+..+....+.++||++|+++|.-++.+|..   +++|+++|.+++.++.|++|++..|+.++++++.+|+.+.
T Consensus        44 ~~~~g~~L~~L~~~~~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~g~a~~~  123 (227)
T d1susa1          44 SADEGQFLSMLLKLINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPV  123 (227)
T ss_dssp             CHHHHHHHHHHHHHHTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHH
T ss_pred             CHHHHHHHHHHHHhcCCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccccceeeeehHHHHH
Confidence            3433344555555566789999999999999999864   4699999999999999999999999999999999999999


Q ss_pred             HHHHhc
Q 046527          157 IRQLMT  162 (380)
Q Consensus       157 l~~l~~  162 (380)
                      +.++..
T Consensus       124 L~~l~~  129 (227)
T d1susa1         124 LDEMIK  129 (227)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            999863

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=97.80  E-value=2e-05  Score=71.71  Aligned_cols=62  Identities=11%  Similarity=0.004  Sum_probs=55.3

Q ss_pred             cCCCCeEEEecCCcchhHHHHhhc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHH
Q 046527           93 FRPGETICDMFAGIGPFAIPAAQK--GCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDARE  155 (380)
Q Consensus        93 i~~g~~VLDlfcGvG~fsl~aA~~--g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e  155 (380)
                      +....+|||+|||+|.++..++++  ..+++++|+ |+.++.++++++..++.+++++..+|..+
T Consensus        79 ~~~~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~~~~~~~~ri~~~~~d~~~  142 (256)
T d1qzza2          79 WSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFK  142 (256)
T ss_dssp             CTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTS
T ss_pred             CccCCEEEEECCCCCHHHHHHHHhhcCcEEEEecC-hHHHHHHHHHHhhcCCcceeeeeeeeccc
Confidence            456689999999999999999988  459999998 89999999999999999999999988653

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=97.79  E-value=1.4e-05  Score=73.10  Aligned_cols=56  Identities=13%  Similarity=0.080  Sum_probs=47.7

Q ss_pred             CCCCeEEEecCCcchhHHHHhhcC--CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHH
Q 046527           94 RPGETICDMFAGIGPFAIPAAQKG--CIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDARE  155 (380)
Q Consensus        94 ~~g~~VLDlfcGvG~fsl~aA~~g--~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e  155 (380)
                      .++.+|||+|||+|.++..+++.+  ..|+|+|+++.+++.|+++.     . ++.+.++|+.+
T Consensus        83 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~~-----~-~~~~~~~d~~~  140 (268)
T d1p91a_          83 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY-----P-QVTFCVASSHR  140 (268)
T ss_dssp             TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC-----T-TSEEEECCTTS
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhhhhhhccc-----c-cccceeeehhh
Confidence            567899999999999999999874  49999999999999998752     2 37889998764

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.77  E-value=8.4e-05  Score=67.41  Aligned_cols=64  Identities=13%  Similarity=0.092  Sum_probs=47.4

Q ss_pred             CeEEEecCCcchhHHHHhhc------C--CEEEEEeCCHHHHHHHHHHHHHcC-CCC-cEEEEeccHHHHHHHH
Q 046527           97 ETICDMFAGIGPFAIPAAQK------G--CIVFANDLNPDSVHYLKINAKVNK-VDN-YVRAYNMDAREFIRQL  160 (380)
Q Consensus        97 ~~VLDlfcGvG~fsl~aA~~------g--~~V~avDlnp~Aie~a~~Na~lN~-l~~-ri~~~~~Da~e~l~~l  160 (380)
                      .+|||+|||+|.++..++..      +  ..++|+|.|+.+++.++++++... +.+ .+.+...++.++....
T Consensus        42 ~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (280)
T d1jqea_          42 IKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRM  115 (280)
T ss_dssp             EEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCHHHHHHHH
T ss_pred             CeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchhhhhhhhcchh
Confidence            37999999999999887653      2  278999999999999999986543 332 2445677776665443

>d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Type I restriction enzyme StySJI M protein
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=97.70  E-value=1.6e-05  Score=77.59  Aligned_cols=69  Identities=22%  Similarity=0.239  Sum_probs=55.3

Q ss_pred             ceeecChHHHHHHHHHhccCCCCeEEEecCCcchhHHHHhhcC---------------CEEEEEeCCHHHHHHHHHHHHH
Q 046527           75 LVYWNSRLEHEHLRIISQFRPGETICDMFAGIGPFAIPAAQKG---------------CIVFANDLNPDSVHYLKINAKV  139 (380)
Q Consensus        75 ~ff~n~rl~tE~~r~i~~i~~g~~VLDlfcGvG~fsl~aA~~g---------------~~V~avDlnp~Aie~a~~Na~l  139 (380)
                      +-|+.|+...+.+..+....++.+|+|.+||+|.|.+.+.++.               ..++|+|+++.++..|+.|+.+
T Consensus       142 G~f~TP~~Iv~~mv~ll~~~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l  221 (425)
T d2okca1         142 GQYFTPRPLIQAMVDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYL  221 (425)
T ss_dssp             GGGCCCHHHHHHHHHHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHH
T ss_pred             hhhccchhhhHhhheeccCcccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhh
Confidence            3567888666655444455678999999999999999887641               2499999999999999999999


Q ss_pred             cCCC
Q 046527          140 NKVD  143 (380)
Q Consensus       140 N~l~  143 (380)
                      +++.
T Consensus       222 ~g~~  225 (425)
T d2okca1         222 HGIG  225 (425)
T ss_dssp             TTCC
T ss_pred             cCCc
Confidence            8875

>d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Streptococcus pneumoniae, Ermam [TaxId: 1313]

Probab=97.69  E-value=7.6e-07  Score=81.77  Aligned_cols=63  Identities=16%  Similarity=0.208  Sum_probs=53.7

Q ss_pred             hccCCCCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHH
Q 046527           91 SQFRPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREF  156 (380)
Q Consensus        91 ~~i~~g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~  156 (380)
                      ..+.+++.||++|||.|.++..+++.+.+|+|+|+++..++.+++...   ...+++++++|+.++
T Consensus        25 ~~~~~~d~VLEIGpG~G~LT~~L~~~~~~v~aIE~D~~l~~~l~~~~~---~~~n~~ii~~D~l~~   87 (245)
T d1yuba_          25 LNLKETDTVYEIGTGKGHLTTKLAKISKQVTSIELDSHLFNLSSEKLK---LNTRVTLIHQDILQF   87 (245)
T ss_dssp             CCCCSSEEEEECSCCCSSCSHHHHHHSSEEEESSSSCSSSSSSSCTTT---TCSEEEECCSCCTTT
T ss_pred             cCCCCCCeEEEECCCccHHHHHHHhhcCceeEeeecccchhhhhhhhh---hccchhhhhhhhhcc
Confidence            456789999999999999999999999999999999999998876543   224599999999764

>d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhiQ-like
domain: Hypothetical protein YhiQ
species: Shigella flexneri [TaxId: 623]

Probab=97.59  E-value=3.5e-05  Score=70.73  Aligned_cols=64  Identities=19%  Similarity=0.207  Sum_probs=56.0

Q ss_pred             CeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCC--------CCcEEEEeccHHHHHHHH
Q 046527           97 ETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKV--------DNYVRAYNMDAREFIRQL  160 (380)
Q Consensus        97 ~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~lN~l--------~~ri~~~~~Da~e~l~~l  160 (380)
                      .+|||++||.|..++.+|..|++|+++|.+|..+..++++++....        ..+++++++|+.+++..+
T Consensus        90 ~~VlD~TaGlG~Da~vlA~~G~~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~Ds~~~L~~~  161 (250)
T d2oyra1          90 PDVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDI  161 (250)
T ss_dssp             CCEEETTCTTCHHHHHHHHHTCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTC
T ss_pred             CEEEECCCcccHHHHHHHhCCCEEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecCcHHHHHhcc
Confidence            4899999999999999999999999999999999999988765432        237999999999998654

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.58  E-value=0.00038  Score=64.12  Aligned_cols=66  Identities=17%  Similarity=0.108  Sum_probs=54.7

Q ss_pred             cCCCCeEEEecCCcchhHHHHhhcCC-EEEEEeCCHHHHHHHHHHHHHc---------CCCCcEEEEeccHHHHHH
Q 046527           93 FRPGETICDMFAGIGPFAIPAAQKGC-IVFANDLNPDSVHYLKINAKVN---------KVDNYVRAYNMDAREFIR  158 (380)
Q Consensus        93 i~~g~~VLDlfcGvG~fsl~aA~~g~-~V~avDlnp~Aie~a~~Na~lN---------~l~~ri~~~~~Da~e~l~  158 (380)
                      ..+.++||.+|+|.|..+..+++... +|.+||++|..++.+++-...+         .-+.|++++.+|++++++
T Consensus        70 ~~~p~~vLiiG~G~G~~~~~~l~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~  145 (276)
T d1mjfa_          70 HPKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIK  145 (276)
T ss_dssp             SSCCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHH
T ss_pred             CCCCceEEEecCCchHHHHHHHHhCCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHh
Confidence            45668999999999999988887654 8999999999999999754332         235689999999999874

>d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: Methyltransferase mboII
species: Moraxella bovis [TaxId: 476]

Probab=97.45  E-value=9.1e-05  Score=65.51  Aligned_cols=45  Identities=27%  Similarity=0.382  Sum_probs=42.5

Q ss_pred             CCCCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHHHHH
Q 046527           94 RPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAK  138 (380)
Q Consensus        94 ~~g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~  138 (380)
                      .+|++|||.|||+|+.++++.+.|.+-+|+|++++.++.|++.+.
T Consensus       211 ~~gd~VlDpF~GSGTT~~aa~~~~R~~ig~El~~~y~~~a~~Rl~  255 (256)
T d1g60a_         211 NPNDLVLDCFMGSGTTAIVAKKLGRNFIGCDMNAEYVNQANFVLN  255 (256)
T ss_dssp             CTTCEEEESSCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHH
T ss_pred             CCCCEEEECCCCchHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHc
Confidence            689999999999999999999999999999999999999998764

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=97.41  E-value=0.00071  Score=63.41  Aligned_cols=67  Identities=13%  Similarity=0.072  Sum_probs=55.4

Q ss_pred             cCCCCeEEEecCCcchhHHHHhhcC--CEEEEEeCCHHHHHHHHHHHHH-cC--C-CCcEEEEeccHHHHHHH
Q 046527           93 FRPGETICDMFAGIGPFAIPAAQKG--CIVFANDLNPDSVHYLKINAKV-NK--V-DNYVRAYNMDAREFIRQ  159 (380)
Q Consensus        93 i~~g~~VLDlfcGvG~fsl~aA~~g--~~V~avDlnp~Aie~a~~Na~l-N~--l-~~ri~~~~~Da~e~l~~  159 (380)
                      ....++||.+|.|.|..+..+++..  .+|++||++|..++.+++.... ++  + +.+++++.+|++++++.
T Consensus        75 ~~~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~  147 (312)
T d1uira_          75 HPEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLER  147 (312)
T ss_dssp             SSCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHH
T ss_pred             CCCcceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhh
Confidence            3556799999999999999888763  4999999999999999998643 22  1 35799999999999854

>d1o9ga_ c.66.1.29 (A:) rRNA methyltransferase AviRa {Streptomyces viridochromogenes [TaxId: 1938]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase AviRa
domain: rRNA methyltransferase AviRa
species: Streptomyces viridochromogenes [TaxId: 1938]

Probab=97.38  E-value=3.6e-05  Score=70.56  Aligned_cols=75  Identities=12%  Similarity=-0.013  Sum_probs=51.8

Q ss_pred             hHHHHHHH-HH--hccCCCCeEEEecCCcchhHHHHhhcCC---------------------------------------
Q 046527           81 RLEHEHLR-II--SQFRPGETICDMFAGIGPFAIPAAQKGC---------------------------------------  118 (380)
Q Consensus        81 rl~tE~~r-~i--~~i~~g~~VLDlfcGvG~fsl~aA~~g~---------------------------------------  118 (380)
                      ++..+.+. .+  .....+..++|.|||+|+|.|.+|..++                                       
T Consensus        33 ~Laa~il~~al~l~~w~~~~~LlDPmCGSGTilIEAAlia~niaPGl~R~f~fe~w~~~~~~~w~~l~~~a~~~~~~~~~  112 (249)
T d1o9ga_          33 RLATEIFQRALARLPGDGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERR  112 (249)
T ss_dssp             HHHHHHHHHHHHTSSCCSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhcCCCCCceeccccCccHHHHHHHHHHhCcCcCcccchhhhcccccCHHHHHHHHHHHHHHHhcccc
Confidence            45555542 22  2334556799999999999998886421                                       


Q ss_pred             ---EEEEEeCCHHHHHHH---HHHHHHcCCCCcEEEEeccHHH
Q 046527          119 ---IVFANDLNPDSVHYL---KINAKVNKVDNYVRAYNMDARE  155 (380)
Q Consensus       119 ---~V~avDlnp~Aie~a---~~Na~lN~l~~ri~~~~~Da~e  155 (380)
                         .++|.|+++.+++.|   ++|++..|+.+.+.+.+.|+++
T Consensus       113 ~~~~i~G~D~d~~ai~~A~~~r~n~~~Agl~~~i~i~~~d~f~  155 (249)
T d1o9ga_         113 EQSERFGKPSYLEAAQAARRLRERLTAEGGALPCAIRTADVFD  155 (249)
T ss_dssp             HHHHHHCCHHHHHHHHHHHHHHHHHHHTTSSCCEEEEECCTTC
T ss_pred             ccCCccccccCHHHHHHHHHHHHHHHHcCCCceeeeeecchhc
Confidence               246777777777777   4577777887777777777654

>d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: NOL1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.34  E-value=0.0003  Score=65.27  Aligned_cols=65  Identities=18%  Similarity=0.103  Sum_probs=57.3

Q ss_pred             hccCCCCeEEEecCCcchhHHHHhhc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHH
Q 046527           91 SQFRPGETICDMFAGIGPFAIPAAQK---GCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREF  156 (380)
Q Consensus        91 ~~i~~g~~VLDlfcGvG~fsl~aA~~---g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~  156 (380)
                      ....+|++|||+|||.|.=++++|..   ...|+|+|+++.-++.+++|++..|+.+ +.+.+.|...+
T Consensus        90 L~~~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g~~~-~~~~~~d~~~~  157 (293)
T d2b9ea1          90 LDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSC-CELAEEDFLAV  157 (293)
T ss_dssp             HCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCS-EEEEECCGGGS
T ss_pred             cCCCccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcCccc-eeeeehhhhhh
Confidence            45788999999999999999888754   3589999999999999999999999987 89999888654

>d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.RsrI N6 adenosine-specific DNA methyltransferase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=97.32  E-value=0.00012  Score=65.56  Aligned_cols=52  Identities=31%  Similarity=0.459  Sum_probs=45.9

Q ss_pred             HHHhcc-CCCCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHHHHHH
Q 046527           88 RIISQF-RPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKV  139 (380)
Q Consensus        88 r~i~~i-~~g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~l  139 (380)
                      +++... .+|+.|||.|||+|+.++++.+.|.+.+|+|+++..++.|++.+..
T Consensus       199 ~~I~~~s~~gdiVLDpF~GSGTT~~Aa~~lgR~~ig~El~~~y~~~a~~Ri~~  251 (279)
T d1eg2a_         199 RLVRALSHPGSTVLDFFAGSGVTARVAIQEGRNSICTDAAPVFKEYYQKQLTF  251 (279)
T ss_dssp             HHHHHHSCTTCEEEETTCTTCHHHHHHHHHTCEEEEEESSTHHHHHHHHHHHH
T ss_pred             HHHHhhcCCCCEEEecCCCCcHHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHH
Confidence            344333 5899999999999999999999999999999999999999998864

>d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermus thermophilus [TaxId: 274]

Probab=97.32  E-value=0.00059  Score=59.25  Aligned_cols=64  Identities=23%  Similarity=0.197  Sum_probs=53.4

Q ss_pred             ccCCCCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHHHHHH
Q 046527           92 QFRPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFIRQL  160 (380)
Q Consensus        92 ~i~~g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~l~~l  160 (380)
                      .+.+|.+++|+.+|.|..+..+...+++|+|+|.+|++++.++.-     ...++.+++++..++-..+
T Consensus        15 ~~~~g~~~vD~T~G~GGhs~~iL~~~~~viaiD~D~~ai~~a~~~-----~~~~~~~~~~~f~~~~~~l   78 (182)
T d1wg8a2          15 AVRPGGVYVDATLGGAGHARGILERGGRVIGLDQDPEAVARAKGL-----HLPGLTVVQGNFRHLKRHL   78 (182)
T ss_dssp             TCCTTCEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHT-----CCTTEEEEESCGGGHHHHH
T ss_pred             CCCCCCEEEEeCCCCcHHHHHHhcccCcEEEEhhhhhHHHHHhhc-----cccceeEeehHHHHHHHHH
Confidence            467899999999999999999999888999999999999988752     2356899998877654433

>d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: M.EcoKI
species: Escherichia coli [TaxId: 562]

Probab=97.31  E-value=0.00026  Score=70.71  Aligned_cols=69  Identities=19%  Similarity=0.240  Sum_probs=54.4

Q ss_pred             ceeecChHHHHHHHHHhccCCCCeEEEecCCcchhHHHHhhc----C----------------CEEEEEeCCHHHHHHHH
Q 046527           75 LVYWNSRLEHEHLRIISQFRPGETICDMFAGIGPFAIPAAQK----G----------------CIVFANDLNPDSVHYLK  134 (380)
Q Consensus        75 ~ff~n~rl~tE~~r~i~~i~~g~~VLDlfcGvG~fsl~aA~~----g----------------~~V~avDlnp~Aie~a~  134 (380)
                      +-|+.|+...+.+..+....++.+|+|.+||+|.|.+.+...    .                ..++|+|+++.++..++
T Consensus       144 GqfyTP~~Iv~~mv~ll~~~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~  223 (524)
T d2ar0a1         144 GQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLAL  223 (524)
T ss_dssp             -CCCCCHHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHH
T ss_pred             chhccccchhHhhhhcccCccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHHH
Confidence            357788866665544455677899999999999999987653    1                15899999999999999


Q ss_pred             HHHHHcCCC
Q 046527          135 INAKVNKVD  143 (380)
Q Consensus       135 ~Na~lN~l~  143 (380)
                      .|+.+++..
T Consensus       224 ~nl~l~~~~  232 (524)
T d2ar0a1         224 MNCLLHDIE  232 (524)
T ss_dssp             HHHHTTTCC
T ss_pred             HHHHhhccc
Confidence            999988765

>d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.PvuII N4 cytosine-specific DNA methyltransferase
species: Proteus vulgaris [TaxId: 585]

Probab=97.30  E-value=8.7e-05  Score=67.48  Aligned_cols=48  Identities=17%  Similarity=0.263  Sum_probs=43.2

Q ss_pred             cCCCCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHc
Q 046527           93 FRPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVN  140 (380)
Q Consensus        93 i~~g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~lN  140 (380)
                      -.+|++|||.|||+|+.++++...|.+.+|+|+++++++.+++.+..+
T Consensus       248 s~~gdiVlDpF~GSGTT~~AA~~lgR~~Ig~El~~~y~~~a~~Rl~~~  295 (320)
T d1booa_         248 TEPDDLVVDIFGGSNTTGLVAERESRKWISFEMKPEYVAASAFRFLDN  295 (320)
T ss_dssp             CCTTCEEEETTCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHGGGSCS
T ss_pred             ccCCCEEEecCCCCcHHHHHHHHcCCcEEEEeCCHHHHHHHHHHHHhc
Confidence            368999999999999999999999999999999999999998775443

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.19  E-value=9.2e-05  Score=67.24  Aligned_cols=47  Identities=15%  Similarity=0.012  Sum_probs=39.4

Q ss_pred             cCCCCeEEEecCCcchhHHHHh-hcCCEEEEEeCCHHHHHHHHHHHHH
Q 046527           93 FRPGETICDMFAGIGPFAIPAA-QKGCIVFANDLNPDSVHYLKINAKV  139 (380)
Q Consensus        93 i~~g~~VLDlfcGvG~fsl~aA-~~g~~V~avDlnp~Aie~a~~Na~l  139 (380)
                      ..+|.+|||+|||+|.+++..+ +.+.+|+|+|.++.+++.++++++.
T Consensus        52 ~~~g~~vLDiGcG~g~~~~~~~~~~~~~v~~~D~S~~~i~~~~~~~~~   99 (263)
T d2g72a1          52 EVSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQE   99 (263)
T ss_dssp             CSCCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTT
T ss_pred             CCCCcEEEEeccCCCHHHHHHhcccCCeEEEEeCCHHHHHHHHHHHhc
Confidence            3467899999999999986555 4566999999999999999988754

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.16  E-value=0.0007  Score=63.14  Aligned_cols=65  Identities=9%  Similarity=0.030  Sum_probs=54.7

Q ss_pred             CCCCeEEEecCCcchhHHHHhhcC--CEEEEEeCCHHHHHHHHHHHHHcC--C-CCcEEEEeccHHHHHH
Q 046527           94 RPGETICDMFAGIGPFAIPAAQKG--CIVFANDLNPDSVHYLKINAKVNK--V-DNYVRAYNMDAREFIR  158 (380)
Q Consensus        94 ~~g~~VLDlfcGvG~fsl~aA~~g--~~V~avDlnp~Aie~a~~Na~lN~--l-~~ri~~~~~Da~e~l~  158 (380)
                      ...++||-+|.|.|..+-.+++..  .+|++||++|..++.+++-...+.  + +.+++++.+|++++++
T Consensus        88 ~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~  157 (295)
T d1inla_          88 PNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVR  157 (295)
T ss_dssp             SSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGG
T ss_pred             CCCceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHHh
Confidence            456799999999999999988864  489999999999999999765542  2 3589999999999873

>d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Transcription factor sc-mtTFB
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.10  E-value=0.0034  Score=58.71  Aligned_cols=58  Identities=10%  Similarity=0.114  Sum_probs=48.9

Q ss_pred             CCCeEEEecCCcchhHHHHhhcC--CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHH
Q 046527           95 PGETICDMFAGIGPFAIPAAQKG--CIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREF  156 (380)
Q Consensus        95 ~g~~VLDlfcGvG~fsl~aA~~g--~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~  156 (380)
                      .++.|||+|.|.|.++..+...+  .+|+++|+++..++.+++...    .++++++++|+..+
T Consensus        43 ~~~~VlEIGPG~G~LT~~Ll~~~~~~~v~~iE~D~~~~~~L~~~~~----~~~~~ii~~D~l~~  102 (322)
T d1i4wa_          43 EELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFE----GSPLQILKRDPYDW  102 (322)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTT----TSSCEEECSCTTCH
T ss_pred             CCCeEEEECCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhcc----CCCcEEEeCchhhc
Confidence            56789999999999999998764  389999999999999987542    24589999998765

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.01  E-value=0.003  Score=58.39  Aligned_cols=66  Identities=14%  Similarity=0.000  Sum_probs=54.9

Q ss_pred             CCCCeEEEecCCcchhHHHHhhcC--CEEEEEeCCHHHHHHHHHHHHHcC---CCCcEEEEeccHHHHHHH
Q 046527           94 RPGETICDMFAGIGPFAIPAAQKG--CIVFANDLNPDSVHYLKINAKVNK---VDNYVRAYNMDAREFIRQ  159 (380)
Q Consensus        94 ~~g~~VLDlfcGvG~fsl~aA~~g--~~V~avDlnp~Aie~a~~Na~lN~---l~~ri~~~~~Da~e~l~~  159 (380)
                      ..-++||-+|.|.|..+-.+++..  .+|++||++|..++.+++-...+.   -..+++++.+|+++++.+
T Consensus        79 ~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~  149 (290)
T d1xj5a_          79 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKN  149 (290)
T ss_dssp             SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHT
T ss_pred             CCCcceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHHhh
Confidence            455799999999999999999863  489999999999999999654332   236899999999999854

>d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: DNA methylase TaqI, N-terminal domain
domain: DNA methylase TaqI, N-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=96.97  E-value=9.8e-05  Score=64.04  Aligned_cols=54  Identities=9%  Similarity=0.199  Sum_probs=39.5

Q ss_pred             cChHHHHHHHHHhccCCCCeEEEecCCcchhHHHHhhc---CCEEEEEeCCHHHHHH
Q 046527           79 NSRLEHEHLRIISQFRPGETICDMFAGIGPFAIPAAQK---GCIVFANDLNPDSVHY  132 (380)
Q Consensus        79 n~rl~tE~~r~i~~i~~g~~VLDlfcGvG~fsl~aA~~---g~~V~avDlnp~Aie~  132 (380)
                      .|+...+.+..+....++++|||.|||+|.|.+.+...   ...++|+|+++.++..
T Consensus         3 TP~~i~~~m~~l~~~~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~   59 (223)
T d2ih2a1           3 TPPEVVDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDL   59 (223)
T ss_dssp             CCHHHHHHHHHHCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCC
T ss_pred             CCHHHHHHHHHhcCCCCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhh
Confidence            34444444433445678899999999999999888754   3489999999876543

>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.97  E-value=0.0014  Score=60.35  Aligned_cols=63  Identities=17%  Similarity=0.073  Sum_probs=53.6

Q ss_pred             HHhccCCCCeEEEecCCcchhHHHHhhcC--CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEecc
Q 046527           89 IISQFRPGETICDMFAGIGPFAIPAAQKG--CIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMD  152 (380)
Q Consensus        89 ~i~~i~~g~~VLDlfcGvG~fsl~aA~~g--~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~D  152 (380)
                      .+....+|++|||+|||-|.=++.++..+  ..|+|+|+++.-++.+++|++..|+.+ +.+...|
T Consensus        96 ~~L~~~~g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~~l~~~~~r~g~~~-~~~~~~~  160 (284)
T d1sqga2          96 TWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKA-TVKQGDG  160 (284)
T ss_dssp             HHHCCCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCC-EEEECCT
T ss_pred             cccCccccceeEeccCccccchhhhhhhhhhhhhhhhhcchhhhhhHhhhhhcccccc-eeeeccc
Confidence            34567899999999999999999998764  489999999999999999999999986 4444444

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=96.90  E-value=0.0021  Score=59.02  Aligned_cols=66  Identities=15%  Similarity=0.012  Sum_probs=55.4

Q ss_pred             cCCCCeEEEecCCcchhHHHHhhc-C-CEEEEEeCCHHHHHHHHHHHHHcC--C-CCcEEEEeccHHHHHH
Q 046527           93 FRPGETICDMFAGIGPFAIPAAQK-G-CIVFANDLNPDSVHYLKINAKVNK--V-DNYVRAYNMDAREFIR  158 (380)
Q Consensus        93 i~~g~~VLDlfcGvG~fsl~aA~~-g-~~V~avDlnp~Aie~a~~Na~lN~--l-~~ri~~~~~Da~e~l~  158 (380)
                      ....++||-+|.|.|..+-.+.+. + .+|+.||++|..++.+++....+.  + +.|++++.+|++++++
T Consensus        73 ~~~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~  143 (274)
T d1iy9a_          73 HPNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIA  143 (274)
T ss_dssp             SSSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHH
T ss_pred             cCCcceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHHHh
Confidence            455689999999999999999986 3 499999999999999999765432  2 3579999999999985

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=96.87  E-value=0.0025  Score=59.70  Aligned_cols=67  Identities=10%  Similarity=0.019  Sum_probs=56.0

Q ss_pred             cCCCCeEEEecCCcchhHHHHhhcC--CEEEEEeCCHHHHHHHHHHHHHcC--C-CCcEEEEeccHHHHHHH
Q 046527           93 FRPGETICDMFAGIGPFAIPAAQKG--CIVFANDLNPDSVHYLKINAKVNK--V-DNYVRAYNMDAREFIRQ  159 (380)
Q Consensus        93 i~~g~~VLDlfcGvG~fsl~aA~~g--~~V~avDlnp~Aie~a~~Na~lN~--l-~~ri~~~~~Da~e~l~~  159 (380)
                      ....++||-+|.|.|..+-.+++..  .+|+.||++|..++.+++-...+.  + +.+++++.+|++++++.
T Consensus       104 ~~~pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~  175 (312)
T d2b2ca1         104 HPDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKN  175 (312)
T ss_dssp             SSSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHH
T ss_pred             CCCCCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHHHh
Confidence            4556799999999999999999864  499999999999999998765432  2 25899999999999854

>d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Escherichia coli [TaxId: 562]

Probab=96.71  E-value=0.0023  Score=56.47  Aligned_cols=63  Identities=22%  Similarity=0.257  Sum_probs=55.2

Q ss_pred             cCCCCeEEEecCCcchhHHHHhhc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHH
Q 046527           93 FRPGETICDMFAGIGPFAIPAAQK--GCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREF  156 (380)
Q Consensus        93 i~~g~~VLDlfcGvG~fsl~aA~~--g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~  156 (380)
                      +-++..++|+|+|.|.-|+++|-.  ..+|+.+|.+..-+..+++-+...++.| +++++.+++++
T Consensus        63 ~~~~~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~KK~~FL~~~~~~L~L~n-v~v~~~R~E~~  127 (207)
T d1jsxa_          63 YLQGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLEN-IEPVQSRVEEF  127 (207)
T ss_dssp             GCCSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSS-EEEEECCTTTS
T ss_pred             hhcCCceeeeeccCCceeeehhhhcccceEEEEecchHHHHHHHHHHHHcCCcc-eeeeccchhhh
Confidence            345679999999999999999965  3599999999999999999999999987 99999888753

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.66  E-value=0.0043  Score=57.25  Aligned_cols=67  Identities=12%  Similarity=0.014  Sum_probs=55.4

Q ss_pred             ccCCCCeEEEecCCcchhHHHHhhc--CCEEEEEeCCHHHHHHHHHHHHHc--CC-CCcEEEEeccHHHHHH
Q 046527           92 QFRPGETICDMFAGIGPFAIPAAQK--GCIVFANDLNPDSVHYLKINAKVN--KV-DNYVRAYNMDAREFIR  158 (380)
Q Consensus        92 ~i~~g~~VLDlfcGvG~fsl~aA~~--g~~V~avDlnp~Aie~a~~Na~lN--~l-~~ri~~~~~Da~e~l~  158 (380)
                      .....++||-+|.|.|..+-.+.+.  ..+|+.+|++|..++.+++-...+  .+ +.|++++.+|++++++
T Consensus        75 ~~~~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~  146 (285)
T d2o07a1          75 SHPNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMK  146 (285)
T ss_dssp             TSSSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHH
T ss_pred             hCcCcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHHh
Confidence            3455689999999999999999986  349999999999999999866443  12 3689999999999985

>d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Hypothetical methyltransferase PH1374
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=96.53  E-value=0.0042  Score=57.88  Aligned_cols=67  Identities=22%  Similarity=0.276  Sum_probs=57.2

Q ss_pred             HHhccCCCCeEEEecCCcchhHHHHhhc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHH
Q 046527           89 IISQFRPGETICDMFAGIGPFAIPAAQK---GCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREF  156 (380)
Q Consensus        89 ~i~~i~~g~~VLDlfcGvG~fsl~aA~~---g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~  156 (380)
                      .+....+|++|||+|||-|.=+..++..   ...|+|+|.++.-++.++.|++..++.+ +.+...|...+
T Consensus       110 ~~l~~~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~~~-i~~~~~d~~~~  179 (313)
T d1ixka_         110 VALDPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLN-VILFHSSSLHI  179 (313)
T ss_dssp             HHHCCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCS-EEEESSCGGGG
T ss_pred             hcccCCccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHhhc-ccccccccccc
Confidence            3456789999999999999988888754   3489999999999999999999999987 77888887644

>d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HhaI
species: Haemophilus haemolyticus [TaxId: 726]

Probab=96.43  E-value=0.0019  Score=59.06  Aligned_cols=43  Identities=26%  Similarity=0.504  Sum_probs=38.8

Q ss_pred             CCCeEEEecCCcchhHHHHhhcCC-EEEEEeCCHHHHHHHHHHH
Q 046527           95 PGETICDMFAGIGPFAIPAAQKGC-IVFANDLNPDSVHYLKINA  137 (380)
Q Consensus        95 ~g~~VLDlfcGvG~fsl~aA~~g~-~V~avDlnp~Aie~a~~Na  137 (380)
                      .+-+|+|||||.|++++.+-+.|. -|.++|+++.|++..+.|.
T Consensus        10 ~~lrv~~lFsG~Gg~~~gl~~aG~~~v~a~e~d~~a~~~~~~N~   53 (327)
T d2c7pa1          10 TGLRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQEVYEMNF   53 (327)
T ss_dssp             TTCEEEEETCTTTHHHHHHHHTTCEEEEEECCCHHHHHHHHHHH
T ss_pred             CCCeEEEECccccHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHC
Confidence            567999999999999999888887 5788999999999999986

>d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HaeIII
species: Haemophilus aegyptius [TaxId: 197575]

Probab=96.19  E-value=0.003  Score=57.07  Aligned_cols=52  Identities=17%  Similarity=0.321  Sum_probs=42.9

Q ss_pred             eEEEecCCcchhHHHHhhcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHH
Q 046527           98 TICDMFAGIGPFAIPAAQKGC-IVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREF  156 (380)
Q Consensus        98 ~VLDlfcGvG~fsl~aA~~g~-~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~  156 (380)
                      +|+|||||.|.|++-+-..|. -|+++|+++.|.+..+.|.     .+  .++.+|+.++
T Consensus         2 k~~~lF~G~Gg~~~gl~~aG~~~~~a~e~d~~a~~~~~~N~-----~~--~~~~~Di~~~   54 (324)
T d1dcta_           2 NLISLFSGAGGLDLGFQKAGFRIICANEYDKSIWKTYESNH-----SA--KLIKGDISKI   54 (324)
T ss_dssp             EEEEESCSSCHHHHHHHHHTCEEEEEEECCHHHHHHHHHHC-----CS--EEEESCTTTS
T ss_pred             eEEEeCcCcCHHHHHHHHCCCEEEEEEeCCHHHHHHHHHHC-----CC--CCccCChhhC
Confidence            699999999999998887787 5669999999999988884     23  5677887654

>d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Bacillus subtilis [TaxId: 1423]

Probab=95.65  E-value=0.022  Score=51.13  Aligned_cols=61  Identities=23%  Similarity=0.238  Sum_probs=54.6

Q ss_pred             CCCeEEEecCCcchhHHHHhhc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHH
Q 046527           95 PGETICDMFAGIGPFAIPAAQK--GCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREF  156 (380)
Q Consensus        95 ~g~~VLDlfcGvG~fsl~aA~~--g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~  156 (380)
                      .+..++|+|+|.|.-|+++|-.  ..+|+.+|.+..=+..++.-+...++.+ +.+++..++++
T Consensus        70 ~~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~KK~~FL~~v~~~L~L~n-~~i~~~R~E~~  132 (239)
T d1xdza_          70 QVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLEN-TTFCHDRAETF  132 (239)
T ss_dssp             GCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSS-EEEEESCHHHH
T ss_pred             CCCeEEeecCCCchHHHHHHHhCCCccceeecchHHHHHHHHHHHHHhCCCC-cEEEeehhhhc
Confidence            5679999999999999999863  4599999999999999999999999987 88999999865

>d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM {Methylobacillus flagellatus [TaxId: 405]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: FkbM-like
domain: Methyltransferase FkbM
species: Methylobacillus flagellatus [TaxId: 405]

Probab=95.60  E-value=0.014  Score=56.02  Aligned_cols=58  Identities=16%  Similarity=0.031  Sum_probs=47.4

Q ss_pred             cCCCCeEEEecCCcchhHHHHhhc----CCEEEEEeCCHHHHHHHHHHHHHcCCCC---cEEEEe
Q 046527           93 FRPGETICDMFAGIGPFAIPAAQK----GCIVFANDLNPDSVHYLKINAKVNKVDN---YVRAYN  150 (380)
Q Consensus        93 i~~g~~VLDlfcGvG~fsl~aA~~----g~~V~avDlnp~Aie~a~~Na~lN~l~~---ri~~~~  150 (380)
                      +.++++++|+||..|.+++.+++.    +.+|+++|.+|..++.+++|++.|++.+   ++.+++
T Consensus       210 l~kn~vfIDVGAniG~~s~~f~~~~~~~~~kV~aFEP~p~n~~~LkkNi~~n~~~n~~~~I~~~~  274 (395)
T d2py6a1         210 FSDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTDTNFASRITVHG  274 (395)
T ss_dssp             CCSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTTTSTTGGGEEEEC
T ss_pred             cCCCCEEEECCcCCCHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHHHHhcccccccceEEEEE
Confidence            346789999999999999876643    3499999999999999999999987653   455553

>d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNMT2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.41  E-value=0.0071  Score=55.02  Aligned_cols=54  Identities=15%  Similarity=0.207  Sum_probs=42.8

Q ss_pred             CeEEEecCCcchhHHHHhhcCC---EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHH
Q 046527           97 ETICDMFAGIGPFAIPAAQKGC---IVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREF  156 (380)
Q Consensus        97 ~~VLDlfcGvG~fsl~aA~~g~---~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~  156 (380)
                      .+|+|||||+|++++.+-..|.   -|.++|+++.|++..+.|.     .+ ..++++|+.++
T Consensus         3 ~kv~~lF~G~Gg~~~gl~~aG~~~~~~~a~E~~~~a~~~~~~n~-----~~-~~~~~~di~~~   59 (343)
T d1g55a_           3 LRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNF-----PH-TQLLAKTIEGI   59 (343)
T ss_dssp             EEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHC-----TT-SCEECSCGGGC
T ss_pred             CEEEEcCcCccHHHHHHHHcCCCCeEEEEEECCHHHHHHHHHHC-----CC-CCcccCchhhC
Confidence            3699999999999988766664   4789999999999988874     22 45677887655

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=94.05  E-value=0.041  Score=45.28  Aligned_cols=45  Identities=27%  Similarity=0.357  Sum_probs=37.5

Q ss_pred             hccCCCCeEEEecCC-cchhHHHHhhc-CCEEEEEeCCHHHHHHHHH
Q 046527           91 SQFRPGETICDMFAG-IGPFAIPAAQK-GCIVFANDLNPDSVHYLKI  135 (380)
Q Consensus        91 ~~i~~g~~VLDlfcG-vG~fsl~aA~~-g~~V~avDlnp~Aie~a~~  135 (380)
                      ..+++|++|+-+||| +|.+++.+++. |++|+++|.+++-++.|++
T Consensus        22 ~~~~~g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~~r~~~a~~   68 (170)
T d1e3ja2          22 AGVQLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKN   68 (170)
T ss_dssp             HTCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             hCCCCCCEEEEEcccccchhhHhhHhhhcccccccchHHHHHHHHHH
Confidence            468899999999887 67777776654 7899999999999998876

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.04  E-value=0.02  Score=47.56  Aligned_cols=45  Identities=13%  Similarity=0.161  Sum_probs=38.3

Q ss_pred             hccCCCCeEEEecCC-cchhHHHHhhc-CCEEEEEeCCHHHHHHHHH
Q 046527           91 SQFRPGETICDMFAG-IGPFAIPAAQK-GCIVFANDLNPDSVHYLKI  135 (380)
Q Consensus        91 ~~i~~g~~VLDlfcG-vG~fsl~aA~~-g~~V~avDlnp~Aie~a~~  135 (380)
                      ..+++|++|+-+|+| +|.+++.+|+. |++|+++|.+++-++.+++
T Consensus        23 ~~~~~g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~k~~~a~~   69 (168)
T d1piwa2          23 NGCGPGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMK   69 (168)
T ss_dssp             TTCSTTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHH
T ss_pred             hCcCCCCEEEEECCCCcchhHHHHhhhccccccccccchhHHHHhhc
Confidence            468899999999988 78888877754 8899999999998888775

>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=93.40  E-value=0.034  Score=49.51  Aligned_cols=54  Identities=20%  Similarity=0.074  Sum_probs=42.9

Q ss_pred             CCCCeEEEecCCcchhHHHHhhc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHH
Q 046527           94 RPGETICDMFAGIGPFAIPAAQK--GCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDARE  155 (380)
Q Consensus        94 ~~g~~VLDlfcGvG~fsl~aA~~--g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e  155 (380)
                      ....+|+|+|||+|.+++.++++  ..+++..|+ |..++       ..+..++++++.+|..+
T Consensus        79 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~-------~~~~~~rv~~~~gD~f~  134 (244)
T d1fp2a2          79 DGLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVE-------NLSGSNNLTYVGGDMFT  134 (244)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHT-------TCCCBTTEEEEECCTTT
T ss_pred             cCceEEEEecCCccHHHHHHHHhCCCCeEEEecC-HHHHH-------hCcccCceEEEecCccc
Confidence            44578999999999999999987  459999998 44443       33556789999999764

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=93.09  E-value=0.057  Score=45.07  Aligned_cols=45  Identities=22%  Similarity=0.293  Sum_probs=36.7

Q ss_pred             hccCCCCeEEEecCC-cchhHHHHhhc-CC-EEEEEeCCHHHHHHHHH
Q 046527           91 SQFRPGETICDMFAG-IGPFAIPAAQK-GC-IVFANDLNPDSVHYLKI  135 (380)
Q Consensus        91 ~~i~~g~~VLDlfcG-vG~fsl~aA~~-g~-~V~avDlnp~Aie~a~~  135 (380)
                      ..+++|++||-.||| +|.+++.+|+. |+ +|+++|.+++-++.+++
T Consensus        24 ~~~~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~   71 (182)
T d1vj0a2          24 PESFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEE   71 (182)
T ss_dssp             SSCCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHH
T ss_pred             hCCCCCCEEEEECCCccchhheeccccccccccccccccccccccccc
Confidence            457889999999887 56677777764 66 89999999999998865

>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=93.09  E-value=0.066  Score=47.62  Aligned_cols=55  Identities=18%  Similarity=0.041  Sum_probs=42.8

Q ss_pred             cCCCCeEEEecCCcchhHHHHhhcC--CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHH
Q 046527           93 FRPGETICDMFAGIGPFAIPAAQKG--CIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDARE  155 (380)
Q Consensus        93 i~~g~~VLDlfcGvG~fsl~aA~~g--~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e  155 (380)
                      +....+|||+|||.|.+++.++++.  .+++..|+ |..+       +..+..++++++.+|..+
T Consensus        79 f~~~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi-------~~~~~~~ri~~~~gd~~~  135 (244)
T d1fp1d2          79 FEGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVI-------ENAPPLSGIEHVGGDMFA  135 (244)
T ss_dssp             TTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHH-------TTCCCCTTEEEEECCTTT
T ss_pred             ccCCcEEEEecCCCcHHHHHHHHHCCCCeEEEecc-hhhh-------hccCCCCCeEEecCCccc
Confidence            3455799999999999999999874  49999997 4443       334556789999999753

>d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RNA methyltransferase FtsJ
domain: RNA methyltransferase FtsJ
species: Escherichia coli [TaxId: 562]

Probab=92.99  E-value=0.07  Score=45.38  Aligned_cols=54  Identities=28%  Similarity=0.361  Sum_probs=43.1

Q ss_pred             hccCCCCeEEEecCCcchhHHHHhhc-C--CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHH
Q 046527           91 SQFRPGETICDMFAGIGPFAIPAAQK-G--CIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREF  156 (380)
Q Consensus        91 ~~i~~g~~VLDlfcGvG~fsl~aA~~-g--~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~  156 (380)
                      ..++++..||||||+-|.|+-.+++. +  ..|+++|+.|.           ..+.+ +.++++|..+.
T Consensus        18 ~l~k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~-----------~~i~~-~~~~~~d~~~~   74 (180)
T d1ej0a_          18 KLFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPM-----------DPIVG-VDFLQGDFRDE   74 (180)
T ss_dssp             CCCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCC-----------CCCTT-EEEEESCTTSH
T ss_pred             CccCCCCeEEEEeccCCcceEEEEeeccccceEEEeecccc-----------cccCC-ceEeecccccc
Confidence            44689999999999999999988865 2  48999998772           34555 88999998543

>d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Chemotaxis receptor methyltransferase CheR, C-terminal domain
domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=92.94  E-value=0.085  Score=44.94  Aligned_cols=42  Identities=17%  Similarity=0.169  Sum_probs=31.0

Q ss_pred             CCCeEEEecCCcchhHHH----Hhhc----C--CEEEEEeCCHHHHHHHHHH
Q 046527           95 PGETICDMFAGIGPFAIP----AAQK----G--CIVFANDLNPDSVHYLKIN  136 (380)
Q Consensus        95 ~g~~VLDlfcGvG~fsl~----aA~~----g--~~V~avDlnp~Aie~a~~N  136 (380)
                      +.-+||++|||+|-=+..    +...    +  .+|+|.|+++.+++.|+..
T Consensus        24 ~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g   75 (193)
T d1af7a2          24 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSG   75 (193)
T ss_dssp             SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHT
T ss_pred             CCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcC
Confidence            344899999999974333    3321    1  2799999999999998864

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=92.15  E-value=0.12  Score=42.22  Aligned_cols=45  Identities=24%  Similarity=0.335  Sum_probs=36.1

Q ss_pred             hccCCCCeEEEecCC-cchhHHHHhhc-CCEEEEEeCCHHHHHHHHH
Q 046527           91 SQFRPGETICDMFAG-IGPFAIPAAQK-GCIVFANDLNPDSVHYLKI  135 (380)
Q Consensus        91 ~~i~~g~~VLDlfcG-vG~fsl~aA~~-g~~V~avDlnp~Aie~a~~  135 (380)
                      ..+++|++|+-.||| +|.+++.+++. |++|+++|.+++-++.+++
T Consensus        23 ~~~~~g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~~~~~~a~~   69 (166)
T d1llua2          23 TNARPGQWVAISGIGGLGHVAVQYARAMGLHVAAIDIDDAKLELARK   69 (166)
T ss_dssp             HTCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             hCCCCCCEEEEeeccccHHHHHHHHHHcCCccceecchhhHHHhhhc
Confidence            468899999998876 56666666654 7899999999999988764

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=91.16  E-value=0.15  Score=43.36  Aligned_cols=46  Identities=33%  Similarity=0.425  Sum_probs=37.0

Q ss_pred             hccCCCCeEEEecCCc-chhHHHHhhc-CC-EEEEEeCCHHHHHHHHHH
Q 046527           91 SQFRPGETICDMFAGI-GPFAIPAAQK-GC-IVFANDLNPDSVHYLKIN  136 (380)
Q Consensus        91 ~~i~~g~~VLDlfcGv-G~fsl~aA~~-g~-~V~avDlnp~Aie~a~~N  136 (380)
                      ..+++|++||.+|||. |.+++.+|+. |+ +|+++|.++.-++.|++.
T Consensus        21 a~v~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~   69 (195)
T d1kola2          21 AGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQ   69 (195)
T ss_dssp             TTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT
T ss_pred             hCCCCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhc
Confidence            5789999999999885 6666666653 55 999999999999888754

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=90.75  E-value=0.11  Score=43.44  Aligned_cols=46  Identities=24%  Similarity=0.320  Sum_probs=36.6

Q ss_pred             hccCCCCeEEEecCC-cchhHHHHhhc-C-CEEEEEeCCHHHHHHHHHH
Q 046527           91 SQFRPGETICDMFAG-IGPFAIPAAQK-G-CIVFANDLNPDSVHYLKIN  136 (380)
Q Consensus        91 ~~i~~g~~VLDlfcG-vG~fsl~aA~~-g-~~V~avDlnp~Aie~a~~N  136 (380)
                      ..+++|++|+=.||| +|.+++.+++. | .+|+++|.+++-++.|++-
T Consensus        25 ~~~~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~   73 (176)
T d1d1ta2          25 GKVKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAV   73 (176)
T ss_dssp             SCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHH
T ss_pred             hCCCCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhc
Confidence            358899999999886 56666666654 5 4999999999999988764

>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=90.52  E-value=0.14  Score=45.01  Aligned_cols=53  Identities=15%  Similarity=-0.037  Sum_probs=41.4

Q ss_pred             CCCeEEEecCCcchhHHHHhhcC--CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHH
Q 046527           95 PGETICDMFAGIGPFAIPAAQKG--CIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDARE  155 (380)
Q Consensus        95 ~g~~VLDlfcGvG~fsl~aA~~g--~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e  155 (380)
                      ...+|+|+|||.|.+++.++++.  .+++..|+-+- +       +.....+++++..+|..+
T Consensus        81 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v-i-------~~~~~~~r~~~~~~d~~~  135 (243)
T d1kyza2          81 GLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHV-I-------EDAPSYPGVEHVGGDMFV  135 (243)
T ss_dssp             SCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECTTT-T-------TTCCCCTTEEEEECCTTT
T ss_pred             CCcEEEEecCCCcHHHHHHHHHCCCCeEEEcccHHh-h-------hhcccCCceEEecccccc
Confidence            35689999999999999999874  59999998653 2       233445679999999754

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=90.08  E-value=0.14  Score=42.73  Aligned_cols=45  Identities=20%  Similarity=0.222  Sum_probs=35.9

Q ss_pred             hccCCCCeEEEecCC-cchhHHHHhhc-CC-EEEEEeCCHHHHHHHHH
Q 046527           91 SQFRPGETICDMFAG-IGPFAIPAAQK-GC-IVFANDLNPDSVHYLKI  135 (380)
Q Consensus        91 ~~i~~g~~VLDlfcG-vG~fsl~aA~~-g~-~V~avDlnp~Aie~a~~  135 (380)
                      ..+++|++|+-+||| +|.+++.+++. |+ +|+++|.+++-++.+++
T Consensus        23 a~~~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~   70 (174)
T d1p0fa2          23 AKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIE   70 (174)
T ss_dssp             TCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHH
T ss_pred             hCCCCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHH
Confidence            468999999999887 56666666653 65 89999999999988864

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.08  E-value=0.24  Score=40.51  Aligned_cols=45  Identities=24%  Similarity=0.272  Sum_probs=35.2

Q ss_pred             hccCCCCeEEEecCC-cchhHHHHhhc-CC-EEEEEeCCHHHHHHHHH
Q 046527           91 SQFRPGETICDMFAG-IGPFAIPAAQK-GC-IVFANDLNPDSVHYLKI  135 (380)
Q Consensus        91 ~~i~~g~~VLDlfcG-vG~fsl~aA~~-g~-~V~avDlnp~Aie~a~~  135 (380)
                      ..+++|++|+=+||| +|.+++.+++. |+ +|+++|.++.-++.|++
T Consensus        22 ~~~~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~   69 (171)
T d1pl8a2          22 GGVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKE   69 (171)
T ss_dssp             HTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH
T ss_pred             hCCCCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHH
Confidence            467899999999886 55555556554 76 89999999999988764

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.78  E-value=0.2  Score=41.21  Aligned_cols=45  Identities=18%  Similarity=0.204  Sum_probs=37.2

Q ss_pred             hccCCCCeEEEecC--CcchhHHHHhhc-CCEEEEEeCCHHHHHHHHH
Q 046527           91 SQFRPGETICDMFA--GIGPFAIPAAQK-GCIVFANDLNPDSVHYLKI  135 (380)
Q Consensus        91 ~~i~~g~~VLDlfc--GvG~fsl~aA~~-g~~V~avDlnp~Aie~a~~  135 (380)
                      ..+++|++||-.++  |+|.+++.+|+. |++|++++.+++..+.+++
T Consensus        24 ~~~~~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~~~~~~~~~   71 (174)
T d1yb5a2          24 ACVKAGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQ   71 (174)
T ss_dssp             SCCCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH
T ss_pred             hCCCCCCEEEEEeccccccccccccccccCcccccccccccccccccc
Confidence            45789999999986  588888888875 7899999999988877764

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=88.90  E-value=0.26  Score=40.93  Aligned_cols=45  Identities=20%  Similarity=0.317  Sum_probs=37.2

Q ss_pred             hccCCCCeEEEecCC-cchhHHHHhhc-CC-EEEEEeCCHHHHHHHHH
Q 046527           91 SQFRPGETICDMFAG-IGPFAIPAAQK-GC-IVFANDLNPDSVHYLKI  135 (380)
Q Consensus        91 ~~i~~g~~VLDlfcG-vG~fsl~aA~~-g~-~V~avDlnp~Aie~a~~  135 (380)
                      ..+++|++|+-+||| +|.+++.+|+. |+ +|+++|.++.-.+.+++
T Consensus        23 a~~~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~   70 (174)
T d1jqba2          23 ADIEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKF   70 (174)
T ss_dssp             TTCCTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHH
T ss_pred             hCCCCCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHh
Confidence            578999999999887 47778888775 55 89999999998888863

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=88.67  E-value=0.21  Score=40.84  Aligned_cols=45  Identities=24%  Similarity=0.237  Sum_probs=36.2

Q ss_pred             hccCCCCeEEEecCC-cchhHHHHhhc-CCEEEEEeCCHHHHHHHHH
Q 046527           91 SQFRPGETICDMFAG-IGPFAIPAAQK-GCIVFANDLNPDSVHYLKI  135 (380)
Q Consensus        91 ~~i~~g~~VLDlfcG-vG~fsl~aA~~-g~~V~avDlnp~Aie~a~~  135 (380)
                      ..+++|++|+-.||| +|.+++.+|+. |++++++|.+++-.+.+++
T Consensus        26 ~~~~~G~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~~~~~~a~~   72 (168)
T d1uufa2          26 WQAGPGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKA   72 (168)
T ss_dssp             TTCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHH
T ss_pred             hCCCCCCEEEEeccchHHHHHHHHhhcccccchhhccchhHHHHHhc
Confidence            568999999999876 67777777764 7889999999988877764

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=88.62  E-value=0.19  Score=41.92  Aligned_cols=45  Identities=27%  Similarity=0.338  Sum_probs=36.4

Q ss_pred             hccCCCCeEEEecCC-cchhHHHHhhc-CC-EEEEEeCCHHHHHHHHH
Q 046527           91 SQFRPGETICDMFAG-IGPFAIPAAQK-GC-IVFANDLNPDSVHYLKI  135 (380)
Q Consensus        91 ~~i~~g~~VLDlfcG-vG~fsl~aA~~-g~-~V~avDlnp~Aie~a~~  135 (380)
                      ..+++|++|+-+||| +|.+++.+++. |+ +|++.|.+++-.+.+++
T Consensus        24 a~v~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~   71 (174)
T d1e3ia2          24 AKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKA   71 (174)
T ss_dssp             SCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH
T ss_pred             hCCCCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHH
Confidence            568899999999887 47777777765 65 89999999987777664

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.40  E-value=0.81  Score=40.07  Aligned_cols=59  Identities=15%  Similarity=0.067  Sum_probs=47.1

Q ss_pred             CCCeEEEecCCcchhHH----HHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHH
Q 046527           95 PGETICDMFAGIGPFAI----PAAQKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAR  154 (380)
Q Consensus        95 ~g~~VLDlfcGvG~fsl----~aA~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~  154 (380)
                      +|++||-.|++.| ++.    .+++.|++|+..+.+++.++.+.+-++..+...++.++.+|+.
T Consensus         9 k~Kv~lITGas~G-IG~aiA~~la~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dls   71 (257)
T d1xg5a_           9 RDRLALVTGASGG-IGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLS   71 (257)
T ss_dssp             TTCEEEEESTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTT
T ss_pred             CCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEEccCC
Confidence            5778888887655 444    4455689999999999999999888888777777889999973

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=88.03  E-value=0.34  Score=39.65  Aligned_cols=45  Identities=16%  Similarity=0.119  Sum_probs=37.3

Q ss_pred             hccCCCCeEEEecCC--cchhHHHHhhc-CCEEEEEeCCHHHHHHHHH
Q 046527           91 SQFRPGETICDMFAG--IGPFAIPAAQK-GCIVFANDLNPDSVHYLKI  135 (380)
Q Consensus        91 ~~i~~g~~VLDlfcG--vG~fsl~aA~~-g~~V~avDlnp~Aie~a~~  135 (380)
                      ..+++|++||-.++|  +|.+++.+|+. |++|++++.+++-.+.+++
T Consensus        24 ~~l~~g~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~s~~k~~~~~~   71 (179)
T d1qora2          24 YEIKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALK   71 (179)
T ss_dssp             SCCCTTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHH
T ss_pred             hCCCCCCEEEEEccccccchHHHHHHHHhCCeEeecccchHHHHHHHh
Confidence            457899998887444  78888888875 8899999999999998874

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=87.99  E-value=0.46  Score=38.20  Aligned_cols=45  Identities=27%  Similarity=0.356  Sum_probs=35.3

Q ss_pred             hccCCCCeEEEecCC-cchhHHHHhhc-CCEEEEEeCCHHHHHHHHH
Q 046527           91 SQFRPGETICDMFAG-IGPFAIPAAQK-GCIVFANDLNPDSVHYLKI  135 (380)
Q Consensus        91 ~~i~~g~~VLDlfcG-vG~fsl~aA~~-g~~V~avDlnp~Aie~a~~  135 (380)
                      ..+++|++||-.||| +|.+++.+++. |++|+++|.+++-++.+++
T Consensus        23 ~~~~~g~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~~r~~~~k~   69 (168)
T d1rjwa2          23 TGAKPGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKE   69 (168)
T ss_dssp             HTCCTTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHH
T ss_pred             hCCCCCCEEEEeecccchhhhhHHHhcCCCeEeccCCCHHHhhhhhh
Confidence            468899999888776 55556666654 6799999999999888765

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=87.41  E-value=0.27  Score=40.07  Aligned_cols=46  Identities=22%  Similarity=0.303  Sum_probs=35.9

Q ss_pred             hccCCCCeEEEecCC-cchhHHHHhhc-CC-EEEEEeCCHHHHHHHHHH
Q 046527           91 SQFRPGETICDMFAG-IGPFAIPAAQK-GC-IVFANDLNPDSVHYLKIN  136 (380)
Q Consensus        91 ~~i~~g~~VLDlfcG-vG~fsl~aA~~-g~-~V~avDlnp~Aie~a~~N  136 (380)
                      ..+++|++||-.||| +|.+++.+++. |+ .|+++|.+++-.+.+++-
T Consensus        24 ~~~~~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~l   72 (176)
T d2fzwa2          24 AKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEF   72 (176)
T ss_dssp             TCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHH
T ss_pred             hCCCCCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHHh
Confidence            468999999988775 66667766664 64 899999999988887753

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=85.31  E-value=1.4  Score=38.60  Aligned_cols=59  Identities=17%  Similarity=0.094  Sum_probs=46.1

Q ss_pred             CCCeEEEecCCcch---hHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccH
Q 046527           95 PGETICDMFAGIGP---FAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDA  153 (380)
Q Consensus        95 ~g~~VLDlfcGvG~---fsl~aA~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da  153 (380)
                      +|+++|--|++.|.   ++..+++.|++|+..|.+++.++.+...+...+-..++..+.+|+
T Consensus         3 ~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~~~Dv   64 (258)
T d1iy8a_           3 TDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADV   64 (258)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCT
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhCCCCeEEEEeccC
Confidence            47788888876553   455677789999999999999998888776665555688889986

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=85.09  E-value=0.71  Score=38.00  Aligned_cols=47  Identities=28%  Similarity=0.408  Sum_probs=37.7

Q ss_pred             HhccCCCCeEEEecC-C-cchhHHHHhhc-CCEEEEEeCCHHHHHHHHHH
Q 046527           90 ISQFRPGETICDMFA-G-IGPFAIPAAQK-GCIVFANDLNPDSVHYLKIN  136 (380)
Q Consensus        90 i~~i~~g~~VLDlfc-G-vG~fsl~aA~~-g~~V~avDlnp~Aie~a~~N  136 (380)
                      ...+++|++||-.++ | +|..++.+|+. |++|+++..+++..+.++..
T Consensus        24 ~~~v~~G~~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~   73 (182)
T d1v3va2          24 VCGVKGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQI   73 (182)
T ss_dssp             TTCCCSSCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHT
T ss_pred             HhCCCCCCEEEEEeCCCchhHHHHHHHHccCCEEEEeCCCHHHHHHHHhh
Confidence            456889999997666 3 77888888875 78999999999988887654

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=84.94  E-value=1.1  Score=39.56  Aligned_cols=60  Identities=20%  Similarity=0.125  Sum_probs=47.2

Q ss_pred             CCCeEEEecCCcch---hHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCC-CcEEEEeccHH
Q 046527           95 PGETICDMFAGIGP---FAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKVD-NYVRAYNMDAR  154 (380)
Q Consensus        95 ~g~~VLDlfcGvG~---fsl~aA~~g~~V~avDlnp~Aie~a~~Na~lN~l~-~ri~~~~~Da~  154 (380)
                      +|+++|--|++.|.   ++..+++.|++|+.+|.+++.++.+.+.+...+.. .++.++.+|+.
T Consensus         3 ~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~~~~Dv~   66 (274)
T d1xhla_           3 SGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVT   66 (274)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTT
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCCCcceEEEEeeCC
Confidence            47788888876652   34456667999999999999999999998887765 46889999963

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=83.99  E-value=1.4  Score=38.61  Aligned_cols=60  Identities=18%  Similarity=0.085  Sum_probs=46.5

Q ss_pred             CCCeEEEecCCcc---hhHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCC-CcEEEEeccHH
Q 046527           95 PGETICDMFAGIG---PFAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKVD-NYVRAYNMDAR  154 (380)
Q Consensus        95 ~g~~VLDlfcGvG---~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~lN~l~-~ri~~~~~Da~  154 (380)
                      +|+++|--|++.|   .++..+++.|++|+.+|.+++.++.+.+-+...+.. .++.++.+|+.
T Consensus         4 ~gK~alVTGas~GIG~aia~~la~~Ga~V~l~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvs   67 (272)
T d1xkqa_           4 SNKTVIITGSSNGIGRTTAILFAQEGANVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVT   67 (272)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTT
T ss_pred             CCCEEEEeCcCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCCceEEEEccCC
Confidence            4778888876655   334456677999999999999999999888777654 45889999863

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=83.69  E-value=0.87  Score=37.26  Aligned_cols=45  Identities=27%  Similarity=0.355  Sum_probs=34.1

Q ss_pred             hccCCCCeEEEecCC-cchhHHHHhhc-CC-EEEEEeCCHHHHHHHHH
Q 046527           91 SQFRPGETICDMFAG-IGPFAIPAAQK-GC-IVFANDLNPDSVHYLKI  135 (380)
Q Consensus        91 ~~i~~g~~VLDlfcG-vG~fsl~aA~~-g~-~V~avDlnp~Aie~a~~  135 (380)
                      ..+++|++|+-+||| +|.+++.+++. |+ .|+..|.++.-++.+++
T Consensus        24 ~~~~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~   71 (174)
T d1f8fa2          24 LKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQ   71 (174)
T ss_dssp             TCCCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHH
T ss_pred             hCCCCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHH
Confidence            468899999988876 44455556543 55 78889999998888875

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=82.53  E-value=1.4  Score=35.73  Aligned_cols=44  Identities=18%  Similarity=0.277  Sum_probs=33.9

Q ss_pred             ccCCCCeEEEecCC-cchhHHHHhh-cCC-EEEEEeCCHHHHHHHHH
Q 046527           92 QFRPGETICDMFAG-IGPFAIPAAQ-KGC-IVFANDLNPDSVHYLKI  135 (380)
Q Consensus        92 ~i~~g~~VLDlfcG-vG~fsl~aA~-~g~-~V~avDlnp~Aie~a~~  135 (380)
                      .+++|++||-.|+| +|.+++.+++ .|+ .|+++|.+++-++.+++
T Consensus        29 ~~~~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~   75 (172)
T d1h2ba2          29 TLYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAER   75 (172)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHH
T ss_pred             ccCCCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhh
Confidence            47899999999886 5555566665 354 89999999988887774

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=82.49  E-value=2  Score=37.38  Aligned_cols=58  Identities=21%  Similarity=0.214  Sum_probs=44.6

Q ss_pred             CCCeEEEecCCcch---hHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHH
Q 046527           95 PGETICDMFAGIGP---FAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAR  154 (380)
Q Consensus        95 ~g~~VLDlfcGvG~---fsl~aA~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~  154 (380)
                      +|+++|--|++.|.   ++..+++.|++|+.+|.+++.++.+.+-++..+.  ++.++.+|+.
T Consensus         4 ~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~g~--~~~~~~~Dv~   64 (260)
T d1zema1           4 NGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEASVREKGV--EARSYVCDVT   64 (260)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTS--CEEEEECCTT
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC--cEEEEEccCC
Confidence            57888877766552   4455667799999999999999998888766553  4788999973

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=81.54  E-value=0.81  Score=35.67  Aligned_cols=45  Identities=24%  Similarity=0.327  Sum_probs=34.5

Q ss_pred             CCcchhHHHHhh----cCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHH
Q 046527          104 AGIGPFAIPAAQ----KGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDARE  155 (380)
Q Consensus       104 cGvG~fsl~aA~----~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e  155 (380)
                      ||.|.+|..+++    .|..|+.+|.||+.++.+.+.     + + +.++.||+.+
T Consensus         6 ~G~G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~-----~-~-~~vi~Gd~~~   54 (132)
T d1lssa_           6 AGIGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAE-----I-D-ALVINGDCTK   54 (132)
T ss_dssp             ECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH-----C-S-SEEEESCTTS
T ss_pred             ECCCHHHHHHHHHHHHCCCCcceecCChhhhhhhhhh-----h-h-hhhccCcccc
Confidence            567888888775    477999999999999877643     1 2 5688899853

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=81.17  E-value=0.45  Score=39.13  Aligned_cols=45  Identities=29%  Similarity=0.392  Sum_probs=36.0

Q ss_pred             hccCCCCeEEEecC--CcchhHHHHhhc-CCEEEEEeCCHHHHHHHHH
Q 046527           91 SQFRPGETICDMFA--GIGPFAIPAAQK-GCIVFANDLNPDSVHYLKI  135 (380)
Q Consensus        91 ~~i~~g~~VLDlfc--GvG~fsl~aA~~-g~~V~avDlnp~Aie~a~~  135 (380)
                      ..+++|++||-.++  |+|.+++.+|+. |++|++++.+++-.+.+++
T Consensus        23 ~~~~~g~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~~~~~~~~~   70 (171)
T d1iz0a2          23 AQARPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLA   70 (171)
T ss_dssp             TTCCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHH
T ss_pred             hCCCCCCEEEEEeccccchhhhhhhhcccccccccccccccccccccc
Confidence            46789999998774  467788878865 7899999999988877664

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=80.87  E-value=0.62  Score=38.04  Aligned_cols=46  Identities=22%  Similarity=0.257  Sum_probs=35.2

Q ss_pred             hccCCCCeEEEecCC-cchhHHHHhhc-C-CEEEEEeCCHHHHHHHHHH
Q 046527           91 SQFRPGETICDMFAG-IGPFAIPAAQK-G-CIVFANDLNPDSVHYLKIN  136 (380)
Q Consensus        91 ~~i~~g~~VLDlfcG-vG~fsl~aA~~-g-~~V~avDlnp~Aie~a~~N  136 (380)
                      ..+++|++||-.||| +|.+++.+++. + ++|+++|.+++-.+.+++.
T Consensus        24 ~~vk~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~~   72 (176)
T d2jhfa2          24 AKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEV   72 (176)
T ss_dssp             TCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT
T ss_pred             hCCCCCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHHh
Confidence            468999999999885 45455555543 4 4999999999998887654

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=80.83  E-value=2.9  Score=36.37  Aligned_cols=57  Identities=16%  Similarity=0.025  Sum_probs=45.1

Q ss_pred             CCCeEEEecCCcc---hhHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccH
Q 046527           95 PGETICDMFAGIG---PFAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDA  153 (380)
Q Consensus        95 ~g~~VLDlfcGvG---~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da  153 (380)
                      +|+++|-.|+..|   .++..+++.|++|+.++.+++.++.+.+.+...+.  .+.++..|+
T Consensus         5 ~gK~alITGas~GIG~aia~~la~~G~~V~i~~r~~~~l~~~~~~~~~~~~--~~~~~~~D~   64 (258)
T d1ae1a_           5 KGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWREKGL--NVEGSVCDL   64 (258)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCT
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC--CceEEEeec
Confidence            6888888887655   34556667799999999999999888888877664  377888887

>d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap methylase
domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5
species: Dengue virus 2 [TaxId: 11060]

Probab=80.78  E-value=0.62  Score=41.72  Aligned_cols=47  Identities=15%  Similarity=0.054  Sum_probs=33.4

Q ss_pred             cChHHHHHHHHHh--ccCCCCeEEEecCCcchhHHHHhhcC--CEEEEEeC
Q 046527           79 NSRLEHEHLRIIS--QFRPGETICDMFAGIGPFAIPAAQKG--CIVFANDL  125 (380)
Q Consensus        79 n~rl~tE~~r~i~--~i~~g~~VLDlfcGvG~fsl~aA~~g--~~V~avDl  125 (380)
                      .+|-......+..  .+.++..|+|||||-|.++..++...  ..|.|+++
T Consensus        48 ~SR~~~Kl~~~~~~~~~~~~~~vvDlG~~pGgws~~~a~~~~v~~V~g~~i   98 (257)
T d2p41a1          48 VSRGSAKLRWFVERNLVTPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTK   98 (257)
T ss_dssp             SSTHHHHHHHHHHTTSSCCCEEEEEETCTTSHHHHHHHTSTTEEEEEEECC
T ss_pred             cchHHHHHHHHHHhcCccCCCeEEEecCCCChHHHHHHhhcCCCceeEEEe
Confidence            3554444333322  45778899999999999999999764  47777776