Citrus Sinensis ID: 046530

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310
Protein Sequence
MGRVKVQIKRIENTTNRQVTFSKRRNGLVKKAYELSVLCDVDVALIMFSPSGRVSLFSGNKSMEEILARYVNLPEHERGRLRNQEFLQRALGKLRSEANQTYQATSNPTTNTDSHLEEVQQEIVKCKSQIQNMEKRLRIFEEDPSEMTTLYEIKHREQILEETLKQVRIRKHLLEEICNSSSTPATSQAHLPPAETSDHMNGFVTESPNNILEWLPHRDSQVHNLNILDSNGLLPVSDEPQEATEILVPPLNMFRGHNMNIDGQISRRDGLEDDNNDMQRPQFGQVIDVNFSPWTEFYPSGLHIESEDTQ
Secondary Structure (PSIPRED)
ccccccEEEEcccccccccccccccccccHHHHHHHHHccccEEEEEEccccccccccccccHHHHHHHHHcccHHHHHHHcHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHccccHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEEEcccccEEEEEcHHHHHHHHHHHHHcccccHHccccHHHHHHHHHHHHHHcccEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHccccccccccccccccccccccccccccccccccEEcccccccccccccccccccccccccccccccccccccccccEccccccccccccccEEEEccccc
Coil and Loop (DISEMBL)
MGRVKVQIKRIENTTNRQVTFSKRRNGLVKKAYELSVLCDVDVALIMfspsgrvslfsgnkSMEEILARYVnlpehergrlRNQEFLQRALGKLRSEANQtyqatsnpttntdsHLEEVQQEIVKCKSQIQNMEKRLRIfeedpsemttLYEIKHREQILEETLKQVRIRKHLLEEicnssstpatsqahlppaetsdhmngfvtespnnilewlphrdsqvhnlnildsngllpvsdepqeateilvpplnmfrghnmnidgqisrrdgleddnndmqrpqfgqvidvnfspwtefypsglhiesedtq
Flexible Loop (DISEMBL)
mgrvkvqikrienttnrqvtfskrrnglvkkaYELSVLCDVDVALIMFSPSGRVSLFSGNKSMEEILARYVNlpehergrlRNQEFLQRALGKLRSEANQtyqatsnpttntdSHLEEVQQEIVKCKSQIQNMEKRlrifeedpseMTTLYEIKHREQILEETLKQVRIRKHLLEEicnssstpatsqahlpPAETSDHMNGFVTESPNNILEWLPHRDSQVHNLNILDSNGLLPVSDEPQEATEILVPPLNMFRGHNMNIDGQISRRDGLEDDNNDMQRPQFGQVIDVNFSPWTEFYpsglhiesedtq
Low Complexity Region (SEG)
MGRVKVQIKRIENTTNRQVTFSKRRNGLVKKAYELSVLCDVDVALIMFSPSGRVSLFSGNKSMEEILARYVNLPEHERGRLRNQEFLQRALGKLRSEANQTYQATSNPTTNTDSHLEEVQQEIVKCKSQIQNMEKRLRIFEEDPSEMTTLYEIKHREQILEETLKQVRIRKHLLEEICNSSSTPATSQAHLPPAETSDHMNGFVTESPNNILEWLPHRDSQVHNLNILDSNGLLPVSDEPQEATEILVPPLNMFRGHNMNIDGQISRRDGLEDDNNDMQRPQFGQVIDVNFSPWTEFYPSGLHIESEDTQ
Disordered region (IsUnstruct)
******************VTFSKRRNGLVKKAYELSVLCDVDVALIMFSPSGRVSLFSGNKSMEEILARYVNL**************************************************************************TTLYEIKHREQILEETLKQVRIRKHLLEEIC*******************************NILEWLPHRDSQVHNLNILDSNGLL***********ILVPPLNMFRG**************************FGQVIDVNFSPWTEFYPSGL********
Disordered Region (DISOPRED)
*GRVKVQIKRIENTTNRQVTFSKRRNGLVKKAYELSVLCDVDVALIMFSPSGRVSLFSGNKSMEEILARYVNLPEHERG*L****FLQRALGKLRSEANQTY************H*EEVQQEIVKCKSQIQNMEKRLRIFEEDPSEMTTLYEIKHREQILEETLKQVRIRKHLL**********************************************************************************************************************PWTEFYPS**********
Disordered Region (DISEMBL)
MGRVKVQIKRIENTTNRQVTFSKRRNGLVKKAYELSVLCDVDVALIMFSPSGRVSLFSGNKSMEEILARYVNLPEHERGRLRNQEFLQRALGKLRSEANQTYQATSNPTTNTDSHLEEVQQEIVKCKSQIQNMEKRLRIFEEDPSEMTTLYEIKHREQILEETLKQVRIRKHLLEEICNS**************ETSDHMNGFVTESPNNILEWLPHRDSQVHNLNILDSNGLLPVSDEPQEATEILVPPLNMFRGHNMNIDGQISRRDGLEDDNNDMQRPQFGQVIDVNFSPWTEFYPSGLHIESEDTQ
Disordered Region (DISPRO)
*****VQIKRIENTTNRQVTFSKRRNGLVKKAYELSVLCDVDVALIMFSPSGRVSLFSGNKSMEEILARYVNLPEHERGRLRNQEFLQRALGKLRSEANQTYQATSNPTTNTDSHLEEVQQEIVKCKSQIQNMEKRLRIFEEDPSEMTTLYEIKHREQILEETLKQVRIRKHLLEEICNSSSTPATSQAHLPPAETSDHMNGFVTES***ILEWLPHRDSQVHNLNILDSNGLLPVSDEPQEATEILVPPLNMFRGHNMNIDG**************MQRPQFGQVIDVNFSPWTEFYPSGLHIES****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGRVKVQIKRIENTTNRQVTFSKRRNGLVKKAYELSVLCDVDVALIMFSPSGRVSLFSGNKSMEEILARYVNLPEHERGRLRNQEFLQRALGKLRSEANQTYQATSNPTTNTDSHxxxxxxxxxxxxxxxxxxxxxxxxxxxxPSEMTTLYEIKHREQILEETLKQVRIRKHLLEEICNSSSTPATSQAHLPPAETSDHMNGFVTESPNNILEWLPHRDSQVHNLNILDSNGLLPVSDEPQEATEILVPPLNMFRGHNMNIDGQISRRDGLEDDNNDMQRPQFGQVIDVNFSPWTEFYPSGLHIESEDTQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	310	2.2.26 [Sep-21-2011]
Q40885	242	Floral homeotic protein A	N/A	no	0.680	0.871	0.316	3e-23
Q8RU31	265	MADS-box transcription fa	no	no	0.480	0.562	0.388	8e-23
Q2V0P1	272	MADS-box transcription fa	no	no	0.467	0.533	0.403	9e-23
Q43585	248	Floral homeotic protein A	N/A	no	0.477	0.596	0.368	9e-23
Q40704	236	MADS-box transcription fa	no	no	0.467	0.614	0.4	1e-22
Q38836	230	Agamous-like MADS-box pro	no	no	0.470	0.634	0.385	1e-22
Q39685	233	MADS-box protein CMB1 OS=	N/A	no	0.477	0.635	0.387	2e-22
Q6Q9H6	239	MADS-box transcription fa	no	no	0.483	0.627	0.373	4e-22
P29385	246	Agamous-like MADS-box pro	no	no	0.477	0.601	0.396	5e-22
Q40168	248	Floral homeotic protein A	N/A	no	0.467	0.584	0.367	5e-22

>sp|Q40885|AG_PETHY Floral homeotic protein AGAMOUS OS=Petunia hybrida GN=AG1 PE=1 SV=1

 Score =  109 bits (272), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 79/250 (31%), Positives = 128/250 (51%), Gaps = 39/250 (15%)

Query: 1   MGRVKVQIKRIENTTNRQVTFSKRRNGLVKKAYELSVLCDVDVALIMFSPSGRVSLFSGN 60
           +GR K++IKRIENTTNRQVTF KRRNGL+KKAYELSVLCD +VALI+FS  GR+  ++ N
Sbjct: 17  LGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANN 76

Query: 61  KSMEEILARYVNLPEHERGRLRNQEFLQRALGKLRSEANQTYQATSNPTTNTDSHLEEVQ 120
            S++  + RY                             +    +SN  +  +++ +  Q
Sbjct: 77  -SVKATIERY----------------------------KKACSDSSNTGSIAEANAQYYQ 107

Query: 121 QEIVKCKSQIQNMEKRLRIFEEDPSEMTTLYEIKHREQILEETLKQVRIRKH--LLEEI- 177
           QE  K ++QI N++ + R F  +      L ++++ EQ +E+ + ++R +K+  L  EI 
Sbjct: 108 QEASKLRAQIGNLQNQNRNFLGESLAALNLRDLRNLEQKIEKGISKIRAKKNELLFAEIE 167

Query: 178 ------CNSSSTPATSQAHLPPAETSDHMNGFVTESPNNILEWLPHRDSQVH-NLNILDS 230
                  +  +     +A +   E S  MN     S  +++      D++ +  +N L +
Sbjct: 168 YMQKREIDLHNNNQYLRAKIAETERSQQMNLMPGSSSYDLVPPQQSFDARNYLQVNGLQT 227

Query: 231 NGLLPVSDEP 240
           N   P  D+P
Sbjct: 228 NNHYPRQDQP 237

Probable transcription factor involved in regulating genes that determines stamen and carpel development in wild-type flowers.
Petunia hybrida (taxid: 4102)

>sp|Q8RU31|MAD21_ORYSJ MADS-box transcription factor 21 OS=Oryza sativa subsp. japonica GN=MADS21 PE=2 SV=1

 Score =  107 bits (268), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 70/180 (38%), Positives = 94/180 (52%), Gaps = 31/180 (17%)

Query: 1   MGRVKVQIKRIENTTNRQVTFSKRRNGLVKKAYELSVLCDVDVALIMFSPSGRVSLFSGN 60
           MGR K++IKRIEN T+RQVTF KRRNGL+KKAYEL++LCD ++ALI+FS  GR+  FS  
Sbjct: 1   MGRGKIEIKRIENKTSRQVTFCKRRNGLLKKAYELAILCDAEIALIVFSSRGRLYEFSNV 60

Query: 61  KSMEEILARYVNLPEHERGRLRNQEFLQRALGKLRSEANQTYQATSNPTTNTDSHLEEVQ 120
            S    + RY        G                          S P  + +SH +  Q
Sbjct: 61  NSTRSTIERYKKASASTSG--------------------------SAPVIDVNSH-QYFQ 93

Query: 121 QEIVKCKSQIQNMEKRLR-IFEEDPSEMTTLYEIKHREQILEETLKQVRIRKH--LLEEI 177
           QE  K + QIQ ++   R +  E    MT   E+K  E  LE+ + ++R +KH  L  EI
Sbjct: 94  QEAAKMRHQIQTLQNANRHLIGESIGNMTA-KELKSLENRLEKGISRIRSKKHELLFSEI 152

Probable transcription factor.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q2V0P1|MAD58_ORYSJ MADS-box transcription factor 58 OS=Oryza sativa subsp. japonica GN=MADS58 PE=2 SV=1

 Score =  107 bits (268), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 71/176 (40%), Positives = 97/176 (55%), Gaps = 31/176 (17%)

Query: 3   RVKVQIKRIENTTNRQVTFSKRRNGLVKKAYELSVLCDVDVALIMFSPSGRVSLFSGNKS 62
           R K++IKRIENTTNRQVTF KRR+GL+KKAYELSVLCD +VAL++FS  GR+  +S N S
Sbjct: 45  RGKIEIKRIENTTNRQVTFCKRRSGLLKKAYELSVLCDAEVALVVFSSRGRLYEYSNN-S 103

Query: 63  MEEILARYVNLPEHERGRLRNQEFLQRALGKLRSEANQTYQATSNPTTNTDSHLEEVQQE 122
           ++E + RY                          +AN     TSN +T  + + +  QQE
Sbjct: 104 VKETIERY-------------------------KKANSD---TSNASTVAEINAQHYQQE 135

Query: 123 IVKCKSQIQNMEKRLRIFEEDPSEMTTLYEIKHREQILEETLKQVRIRKHLLEEIC 178
             K K QI N++   R    D        E+K  E  L++ L ++R RK+ L  +C
Sbjct: 136 AAKLKQQITNLQNSNRTLVGDNITTMNHRELKQLEGRLDKGLGKIRARKNEL--LC 189

Probable transcription factor involved in the development of floral organs. Acts as a C-class protein in association with MADS3. Involved in the control of lodicule number (whorl 2), stamen specification (whorl 3), floral meristem determinacy and regulation of the carpel morphogenesis (whorl 4). Plays a more predominant role in floral meristem determinacy than MADS3.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q43585|AG_TOBAC Floral homeotic protein AGAMOUS OS=Nicotiana tabacum GN=AG1 PE=2 SV=1

 Score =  107 bits (268), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 66/179 (36%), Positives = 103/179 (57%), Gaps = 31/179 (17%)

Query: 1   MGRVKVQIKRIENTTNRQVTFSKRRNGLVKKAYELSVLCDVDVALIMFSPSGRVSLFSGN 60
           +GR K++IKRIENTTNRQVTF KRRNGL+KKAYELSVLCD +VALI+FS  GR+  ++ N
Sbjct: 17  LGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANN 76

Query: 61  KSMEEILARYVNLPEHERGRLRNQEFLQRALGKLRSEANQTYQATSNPTTNTDSHLEEVQ 120
            S++  + RY                             +    +SN  + ++++ +  Q
Sbjct: 77  -SVKATIERY----------------------------KKACSDSSNTGSISEANAQYYQ 107

Query: 121 QEIVKCKSQIQNMEKRLRIFEEDPSEMTTLYEIKHREQILEETLKQVRIRKH--LLEEI 177
           QE  K ++QI N++ + R    +     +L ++K+ EQ +E+ + ++R +K+  L  EI
Sbjct: 108 QEASKLRAQIGNLQNQNRNMLGESLAALSLRDLKNLEQKIEKGISKIRSKKNELLFAEI 166

Probable transcription factor involved in regulating genes that determines stamen and carpel development in wild-type flowers.

Nicotiana tabacum (taxid: 4097)

>sp|Q40704|MADS3_ORYSJ MADS-box transcription factor 3 OS=Oryza sativa subsp. japonica GN=MADS3 PE=2 SV=1

 Score =  107 bits (267), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 70/175 (40%), Positives = 97/175 (55%), Gaps = 30/175 (17%)

Query: 1   MGRVKVQIKRIENTTNRQVTFSKRRNGLVKKAYELSVLCDVDVALIMFSPSGRVSLFSGN 60
           MGR K++IKRIENTTNRQVTF KRRNGL+KKAYELSVLCD +VALI+FS  GR+  ++ N
Sbjct: 1   MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANN 60

Query: 61  KSMEEILARYVNLPEHERGRLRNQEFLQRALGKLRSEANQTYQATSNPTTNTDSHLEEVQ 120
            S++  + RY                          +AN     TSN  T  + + +  Q
Sbjct: 61  -SVKSTVERY-------------------------KKANSD---TSNSGTVAEVNAQHYQ 91

Query: 121 QEIVKCKSQIQNME-KRLRIFEEDPSEMTTLYEIKHREQILEETLKQVRIRKHLL 174
           QE  K + QI +++    R    D     +L ++K  E  LE+ + ++R RK+ L
Sbjct: 92  QESSKLRQQISSLQNANSRTIVGDSINTMSLRDLKQVENRLEKGIAKIRARKNEL 146

Probable transcription factor involved in the development of floral organs. Acts as C-class protein in association with MADS58. Involved in the control of lodicule number (whorl 2), stamen specification (whorl 3) and floral meristem determinacy (whorl 4), but not in the regulation of carpel morphogenesis. Plays a more predominant role in controlling lodicule development and in specifying stamen identity than MADS58.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q38836|AGL11_ARATH Agamous-like MADS-box protein AGL11 OS=Arabidopsis thaliana GN=AGL11 PE=1 SV=1

 Score =  107 bits (267), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 72/187 (38%), Positives = 100/187 (53%), Gaps = 41/187 (21%)

Query: 1   MGRVKVQIKRIENTTNRQVTFSKRRNGLVKKAYELSVLCDVDVALIMFSPSGRVSLFSGN 60
           MGR K++IKRIEN+TNRQVTF KRRNGL+KKAYELSVLCD +VALI+FS  GR+  ++ N
Sbjct: 1   MGRGKIEIKRIENSTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYANN 60

Query: 61  KSMEEILARYVNLPEHERGRLRNQEFLQRALGKLRSEANQTYQATSNPTTNTDSHLEEV- 119
                I                                 + Y+   + +TNT S ++E+ 
Sbjct: 61  NIRSTI---------------------------------ERYKKACSDSTNT-STVQEIN 86

Query: 120 ----QQEIVKCKSQIQNMEKRLRIFEEDPSEMTTLYEIKHREQILEETLKQVRIRKH--L 173
               QQE  K + QIQ ++   R    D     ++ E+K  E  LE+ + ++R +KH  L
Sbjct: 87  AAYYQQESAKLRQQIQTIQNSNRNLMGDSLSSLSVKELKQVENRLEKAISRIRSKKHELL 146

Query: 174 LEEICNS 180
           L EI N+
Sbjct: 147 LVEIENA 153

Probable transcription factor.

Arabidopsis thaliana (taxid: 3702)

>sp|Q39685|CMB1_DIACA MADS-box protein CMB1 OS=Dianthus caryophyllus GN=CMB1 PE=2 SV=1

 Score =  106 bits (265), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 71/183 (38%), Positives = 106/183 (57%), Gaps = 35/183 (19%)

Query: 1   MGRVKVQIKRIENTTNRQVTFSKRRNGLVKKAYELSVLCDVDVALIMFSPSGRVSLFSGN 60
           MGR +V++KRIEN  NRQVTF+KRRNGL+KKAYELSVLCD +VALI+FS  G++  F   
Sbjct: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIVFSNRGKLYEFCST 60

Query: 61  KSMEEILARYVNLPEHERGRLRNQEFLQR-ALGKLRSEANQTYQATSNPTTNTDSHLEEV 119
             M + L RY                 QR + G L          TS P+  T+S     
Sbjct: 61  SCMNKTLERY-----------------QRCSYGSLE---------TSQPSKETESSY--- 91

Query: 120 QQEIVKCKSQIQNMEKRLR-IFEEDPSEMTTLYEIKHREQILEETLKQVRIRK--HLLEE 176
            QE +K K+++  +++  R +  ED  E++T  E++  E  L+++L+Q+R  K  H+L++
Sbjct: 92  -QEYLKLKAKVDVLQRSHRNLLGEDLGELST-KELEQLEHQLDKSLRQIRSIKTQHMLDQ 149

Query: 177 ICN 179
           + +
Sbjct: 150 LAD 152

Dianthus caryophyllus (taxid: 3570)

>sp|Q6Q9H6|MAD34_ORYSJ MADS-box transcription factor 34 OS=Oryza sativa subsp. japonica GN=MADS34 PE=2 SV=2

 Score =  105 bits (262), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 68/182 (37%), Positives = 103/182 (56%), Gaps = 32/182 (17%)

Query: 1   MGRVKVQIKRIENTTNRQVTFSKRRNGLVKKAYELSVLCDVDVALIMFSPSGRVSLFSGN 60
           MGR KV ++RIEN  +RQVTF+KRRNGL+KKAYELS+LCD +VAL++FS +GR+  FS +
Sbjct: 1   MGRGKVVLQRIENKISRQVTFAKRRNGLLKKAYELSILCDAEVALVLFSHAGRLYQFSSS 60

Query: 61  KSMEEILARYVNLPEHERGRLRNQEFLQRALGKLRSEANQTYQATSNPTTNTDSHLEEVQ 120
            +M + L RY                 QR +            A+ +    T   ++   
Sbjct: 61  SNMLKTLERY-----------------QRYI-----------YASQDAAAPTSDEMQNNY 92

Query: 121 QEIVKCKSQIQNMEKRLR-IFEEDPSEMTTLYEIKHREQILEETLKQVRIRKH--LLEEI 177
           QE V  K+ ++ +++  R +  ED + + T  E++  E  +  TLKQ+R RK   LL+E+
Sbjct: 93  QEYVNLKAHVEILQQSQRNLLGEDLAPLAT-NELEQLESQVVRTLKQIRSRKTQVLLDEL 151

Query: 178 CN 179
           C+
Sbjct: 152 CD 153

Probable transcription factor.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|P29385|AGL5_ARATH Agamous-like MADS-box protein AGL5 OS=Arabidopsis thaliana GN=AGL5 PE=1 SV=1

 Score =  105 bits (262), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 71/179 (39%), Positives = 101/179 (56%), Gaps = 31/179 (17%)

Query: 1   MGRVKVQIKRIENTTNRQVTFSKRRNGLVKKAYELSVLCDVDVALIMFSPSGRVSLFSGN 60
           +GR K++IKRIENTTNRQVTF KRRNGL+KKAYELSVLCD +VAL++FS  GR+  ++ N
Sbjct: 16  IGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVIFSTRGRLYEYANN 75

Query: 61  KSMEEILARYVNLPEHERGRLRNQEFLQRALGKLRSEANQTYQATSNPTTNTDSHLEEVQ 120
            S+   + RY                      K  S+A        NP T T+++ +  Q
Sbjct: 76  -SVRGTIERY---------------------KKACSDA-------VNPPTITEANTQYYQ 106

Query: 121 QEIVKCKSQIQNMEKRLRIFEEDPSEMTTLYEIKHREQILEETLKQVRIRKH--LLEEI 177
           QE  K + QI++++   R    +        E+K+ E  LE+ + +VR +KH  L+ EI
Sbjct: 107 QEASKLRRQIRDIQNLNRHILGESLGSLNFKELKNLESRLEKGISRVRSKKHEMLVAEI 165

Probable transcription factor.

Arabidopsis thaliana (taxid: 3702)

>sp|Q40168|AG_SOLLC Floral homeotic protein AGAMOUS OS=Solanum lycopersicum GN=AG1 PE=2 SV=1

 Score =  105 bits (262), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 64/174 (36%), Positives = 99/174 (56%), Gaps = 29/174 (16%)

Query: 1   MGRVKVQIKRIENTTNRQVTFSKRRNGLVKKAYELSVLCDVDVALIMFSPSGRVSLFSGN 60
           +GR K++IKRIENTTNRQVTF KRRNGL+KKAYELSVLCD +VAL++FS  GR+  ++ N
Sbjct: 17  LGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSNRGRLYEYANN 76

Query: 61  KSMEEILARYVNLPEHERGRLRNQEFLQRALGKLRSEANQTYQATSNPTTNTDSHLEEVQ 120
            S++  + RY                             +    +SN  + ++++ +  Q
Sbjct: 77  -SVKATIERY----------------------------KKACSDSSNTGSVSEANAQYYQ 107

Query: 121 QEIVKCKSQIQNMEKRLRIFEEDPSEMTTLYEIKHREQILEETLKQVRIRKHLL 174
           QE  K ++QI N+  + R    +      L E+K+ EQ +E+ + ++R +K+ L
Sbjct: 108 QEASKLRAQIGNLMNQNRNMMGEALAGMKLKELKNLEQRIEKGISKIRSKKNEL 161

Probable transcription factor involved in regulating genes that determines stamen and carpel development in wild-type flowers.

Solanum lycopersicum (taxid: 4081)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	310
225458762	322	PREDICTED: MADS-box transcription factor	0.958	0.922	0.684	1e-115
147782530	311	hypothetical protein VITISV_012132 [Viti	0.806	0.803	0.578	4e-88
255538136	230	mads box protein, putative [Ricinus comm	0.712	0.960	0.633	4e-75
269314023	245	MADS-box transcription factor 1 [Hevea b	0.674	0.853	0.680	9e-74
358345520	318	MADS-box transcription factor [Medicago	0.890	0.867	0.51	3e-73
316890784	217	MADS-box protein Md subfamily [Coffea ar	0.616	0.880	0.627	5e-67
356509759	310	PREDICTED: MADS-box protein GGM13-like [	0.709	0.709	0.605	2e-66
343160545	348	AGL66 protein [Eschscholzia californica]	0.880	0.784	0.405	3e-50
296082461	338	unnamed protein product [Vitis vinifera]	0.787	0.721	0.457	1e-48
343160415	335	MADS2 protein [Aristolochia fimbriata]	0.683	0.632	0.466	2e-46

>gi|225458762|ref|XP_002285097.1| PREDICTED: MADS-box transcription factor 3 [Vitis vinifera] gi|302142239|emb|CBI19442.3| unnamed protein product [Vitis vinifera]

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 206/301 (68%), Positives = 251/301 (83%), Gaps = 4/301 (1%)

Query: 1   MGRVKVQIKRIENTTNRQVTFSKRRNGLVKKAYELSVLCDVDVALIMFSPSGRVSLFSGN 60
           MGRVK+QIK+IENTTNRQVTFSKRRNGL+KKAYELSVLCDVDVALIMFSPSGRVSLFSGN
Sbjct: 1   MGRVKLQIKKIENTTNRQVTFSKRRNGLIKKAYELSVLCDVDVALIMFSPSGRVSLFSGN 60

Query: 61  KSMEEILARYVNLPEHERGRLRNQEFLQRALGKLRSEANQTYQATSNPTTNTDSHLEEVQ 120
           KS+EEI+ RYVNLPEHERGRL NQEFLQRALGKL+SEAN+TYQA ++P + TDS LEE+Q
Sbjct: 61  KSIEEIMTRYVNLPEHERGRLHNQEFLQRALGKLKSEANRTYQAAASPMS-TDSQLEEIQ 119

Query: 121 QEIVKCKSQIQNMEKRLRIFEEDPSEMTTLYEIKHREQILEETLKQVRIRKHLLEEICNS 180
           QEI+K KSQ+ +M+KRLRIFE DPSE+TT+ E+++REQILEETLKQVR +K  LEE  N+
Sbjct: 120 QEILKYKSQLDDMQKRLRIFEGDPSEITTVREVEYREQILEETLKQVRFQKQALEEKYNT 179

Query: 181 SSTPATSQAHLPPAETSDHMNGFVTESPNNILEWLPHRDSQVHNLNILDSNGLLPVSDEP 240
           +    T+Q HLPP ET++ +NGF++ +PNN+L+WLP RD QV  LN LDSNGLLP+ ++P
Sbjct: 180 TEPQPTTQVHLPP-ETAN-VNGFISGNPNNMLDWLPPRDPQVQILNFLDSNGLLPMREQP 237

Query: 241 QEATEILVPPLNMFRGHNMNIDGQISRRDGLEDDNNDMQRPQFGQVIDVNFSPWTEFYPS 300
           Q   EIL P   +  G N++++  +S   G+E+DNN +QRPQFG  IDVN SPW EFYP+
Sbjct: 238 QRMVEILPPSSTLLPGQNIHLEDHMSPSSGMEEDNN-VQRPQFGPAIDVNLSPWAEFYPT 296

Query: 301 G 301
            
Sbjct: 297 A 297

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147782530|emb|CAN68428.1| hypothetical protein VITISV_012132 [Vitis vinifera]

 Score =  330 bits (847), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 174/301 (57%), Positives = 213/301 (70%), Gaps = 51/301 (16%)

Query: 1   MGRVKVQIKRIENTTNRQVTFSKRRNGLVKKAYELSVLCDVDVALIMFSPSGRVSLFSGN 60
           MGRVK+QIK+IENTTNRQVTFSKRRNGL+KKAYELSVLCDVDVALIMFSPSGR SLFSGN
Sbjct: 1   MGRVKLQIKKIENTTNRQVTFSKRRNGLIKKAYELSVLCDVDVALIMFSPSGRXSLFSGN 60

Query: 61  KSMEEILARYVNLPEHERGRLRNQEFLQRALGKLRSEANQTYQATSNPTTNTDSHLEEVQ 120
           KS+EEI+ RYVNLPEHERGR                    +Y+            L E+Q
Sbjct: 61  KSIEEIMTRYVNLPEHERGR--------------------SYKG-----------LLEIQ 89

Query: 121 QEIVKCKSQIQNMEKRLRIFEEDPSEMTTLYEIKHREQILEETLKQVRIRKHLLEEICNS 180
           QEI+K KSQ+ +M+KRLRIFE DPSE+TT+ E+++REQILEETLKQVR +K         
Sbjct: 90  QEILKYKSQLDDMQKRLRIFEGDPSEITTVREVEYREQILEETLKQVRFQK--------- 140

Query: 181 SSTPATSQAHLPPAETSDHMNGFVTESPNNILEWLPHRDSQVHNLNILDSNGLLPVSDEP 240
                    HLPP ET++ +NGF++ +PNN+L+WLP RD QV  LN LDSNGLLP+ ++P
Sbjct: 141 --------VHLPP-ETAN-VNGFISGNPNNMLDWLPPRDPQVQILNFLDSNGLLPMREQP 190

Query: 241 QEATEILVPPLNMFRGHNMNIDGQISRRDGLEDDNNDMQRPQFGQVIDVNFSPWTEFYPS 300
           Q   EIL P   +  G N++++  +S   G+E+DNN +QRPQFG  IDVN SPW EFYP+
Sbjct: 191 QRMVEILPPSSTLLPGQNIHLEDHMSPSSGMEEDNN-VQRPQFGPAIDVNLSPWAEFYPT 249

Query: 301 G 301
            
Sbjct: 250 A 250

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255538136|ref|XP_002510133.1| mads box protein, putative [Ricinus communis] gi|223550834|gb|EEF52320.1| mads box protein, putative [Ricinus communis]

 Score =  287 bits (735), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 152/240 (63%), Positives = 187/240 (77%), Gaps = 19/240 (7%)

Query: 1   MGRVKVQIKRIENTTNRQVTFSKRRNGLVKKAYELSVLCDVDVALIMFSPSGRVSLFSGN 60
           MGRVK+QIKRIENTTNRQVTFSKRRNGL+KKAYELSVLCDVDVALIMFSPSGR+SLFSG 
Sbjct: 1   MGRVKLQIKRIENTTNRQVTFSKRRNGLIKKAYELSVLCDVDVALIMFSPSGRLSLFSGI 60

Query: 61  KSMEEILARYVNLPEHERGRLRNQEFLQRALGKLRSEANQTYQATSNPTTNTDSHLEEVQ 120
           KS+EEIL RYVNLPEHERG         RALGKL++E +Q+++ATS P    D  LEE+Q
Sbjct: 61  KSIEEILMRYVNLPEHERG---------RALGKLKAEGDQSHRATSPPI--ADGQLEELQ 109

Query: 121 QEIVKCKSQIQNMEKRLRIFEEDPSEMTTLYEIKHREQILEETLKQVRIRKHLLEEICNS 180
           QEI + KSQ++ MEK+LRI E + S +TTL E +++EQILEE LK+V++RK +LE+ CN+
Sbjct: 110 QEITRFKSQVEEMEKQLRILEGNLSHITTLCEAEYQEQILEEALKRVQVRKQVLEDNCNN 169

Query: 181 SST--PATS----QAHLPPAETSDHMNGFVTESPNNILEWLPHRDSQVHNLNILDSNGLL 234
           +S   PA +    +AH+P      ++NGF TESPNN+L+W+  RD QV  LN L SNGLL
Sbjct: 170 TSGRPPAANSQCDEAHIPIKNA--YVNGFDTESPNNVLDWIRQRDPQVEILNFLGSNGLL 227

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|269314023|gb|ACZ36914.1| MADS-box transcription factor 1 [Hevea brasiliensis]

 Score =  283 bits (723), Expect = 9e-74,   Method: Compositional matrix adjust.
 Identities = 147/216 (68%), Positives = 175/216 (81%), Gaps = 7/216 (3%)

Query: 1   MGRVKVQIKRIENTTNRQVTFSKRRNGLVKKAYELSVLCDVDVALIMFSPSGRVSLFSGN 60
           MGRVK+QIKRIENTTNRQVT+SKRRNGL+KKAYELSVLCDVDVALIMFSPSGR+SLFSGN
Sbjct: 1   MGRVKLQIKRIENTTNRQVTYSKRRNGLIKKAYELSVLCDVDVALIMFSPSGRLSLFSGN 60

Query: 61  KSMEEILARYVNLPEHERGRLRNQEFLQRALGKLRSEANQTYQATSNPTTNTDSHLEEVQ 120
           KS+EEIL RYVNLPEHERGRL  QEFL++ALGKL++E ++ +QA SNP   TDS LEE Q
Sbjct: 61  KSIEEILTRYVNLPEHERGRLHKQEFLEKALGKLKAEGDRNHQAASNPAI-TDSQLEEFQ 119

Query: 121 QEIVKCKSQIQNMEKRLRIFEEDPSEMTTLYEIKHREQILEETLKQVRIRKHLLEEICNS 180
           QEIV+ KSQ+++MEK++RI E + S  TTL E +++EQILEE LK+V++RK +LEE  NS
Sbjct: 120 QEIVRFKSQVEDMEKQIRILEGNLSHTTTLPEAEYQEQILEEALKRVQMRKQVLEEKYNS 179

Query: 181 SSTPATS---QAHLPPAETSDHMNGFVT-ESPNNIL 212
           S  P  S   QAHLPP     ++N  VT ESP   L
Sbjct: 180 SGAPTVSQCNQAHLPPKNA--YVNDLVTEESPKQCL 213

Source: Hevea brasiliensis

Species: Hevea brasiliensis

Genus: Hevea

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358345520|ref|XP_003636825.1| MADS-box transcription factor [Medicago truncatula] gi|358348889|ref|XP_003638474.1| MADS-box transcription factor [Medicago truncatula] gi|355502760|gb|AES83963.1| MADS-box transcription factor [Medicago truncatula] gi|355504409|gb|AES85612.1| MADS-box transcription factor [Medicago truncatula]

 Score =  281 bits (718), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 153/300 (51%), Positives = 201/300 (67%), Gaps = 24/300 (8%)

Query: 1   MGRVKVQIKRIENTTNRQVTFSKRRNGLVKKAYELSVLCDVDVALIMFSPSGRVSLFSGN 60
           MGRVK+QIK+IEN TNRQVTFSKRRNGL+KKAYELSVLCDVDV LIMFSPSGR +LFSGN
Sbjct: 1   MGRVKLQIKKIENITNRQVTFSKRRNGLIKKAYELSVLCDVDVGLIMFSPSGRATLFSGN 60

Query: 61  KSMEEILARYVNLPEHERGRLRNQEFLQRALGKLRSEANQTYQATSNPTTNTDSHLEEVQ 120
           +S+EEIL RY+NLP+ ERGR+ NQE +++ L KL++E +Q  QA S PT  TD  L+EVQ
Sbjct: 61  RSIEEILERYINLPDSERGRMHNQEHIRKVLRKLKAETDQICQAPS-PTI-TDFQLKEVQ 118

Query: 121 QEIVKCKSQIQNMEKRLRIFEEDPSEMTTLYEIKHREQILEETLKQVRIRKHLLEEICNS 180
           +EI  CKSQ++ ME RLRIFE DPSE+TTL E ++REQ+L+ETLKQV++RK         
Sbjct: 119 REIFICKSQLEEMENRLRIFEGDPSEITTLCEAEYREQVLQETLKQVQLRK--------- 169

Query: 181 SSTPATSQAHLPPAETSDHMNGFVTESPNNILEWLPHRDSQVHNLNILDSNGLLPVSDEP 240
                    HL   +T D ++GF+  +  N L W    D+    LN  ++    P+SD  
Sbjct: 170 --------VHL--TKTVD-VDGFIAGTTENALGWFSQGDTNDQILNFANAYNPSPLSDHQ 218

Query: 241 QEAT--EILVPPLNMFRGHNMNIDGQISRRDGLEDDNNDMQRPQFGQVIDVNFSPWTEFY 298
             +T  +++ P   +    N++ + QIS RD  E D ++    QFGQV+D + S W   +
Sbjct: 219 SLSTVVDMVTPTSTLLNSANVDHNCQISPRDAAEADISNTLSTQFGQVMDTSLSSWEHLH 278

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|316890784|gb|ADU56838.1| MADS-box protein Md subfamily [Coffea arabica]

 Score =  260 bits (665), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 133/212 (62%), Positives = 167/212 (78%), Gaps = 21/212 (9%)

Query: 1   MGRVKVQIKRIENTTNRQVTFSKRRNGLVKKAYELSVLCDVDVALIMFSPSGRVSLFSGN 60
           MGRVK+QIK+IE+TTNRQVTFSKRRNGL+KKAYELSVLCDVDVALIMFSPSGR+S+FSGN
Sbjct: 1   MGRVKLQIKKIESTTNRQVTFSKRRNGLIKKAYELSVLCDVDVALIMFSPSGRLSVFSGN 60

Query: 61  KSMEEILARYVNLPEHERGRLRNQEFLQRALGKLRSEANQTYQATSNPTTNTDSHLEEVQ 120
           KS+EEI+ARY+NLPEHERGRL NQE+L++ALGKL+SEA++T Q  S P +  DS +EE+Q
Sbjct: 61  KSLEEIMARYLNLPEHERGRLHNQEYLEKALGKLKSEADRTNQDVS-PVS-VDSQIEEIQ 118

Query: 121 QEIVKCKSQIQNMEKRLRIFEEDPSEMTTLYEIKHREQILEETLKQVRIRKHLLEEICNS 180
           QEI++ KSQ+++MEK+LRI+E DP E+ T+ E ++REQILEETL QVR RK  L      
Sbjct: 119 QEILRYKSQMEDMEKKLRIYEGDPWEINTICEAEYREQILEETLNQVRARKVNL------ 172

Query: 181 SSTPATSQAHLPPAETSDHMNGFVTESPNNIL 212
                        A+ +  +NGF T S ++I 
Sbjct: 173 -------------AQQAAQVNGFTTRSASSIF 191

Source: Coffea arabica

Species: Coffea arabica

Genus: Coffea

Family: Rubiaceae

Order: Gentianales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356509759|ref|XP_003523613.1| PREDICTED: MADS-box protein GGM13-like [Glycine max]

 Score =  258 bits (659), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 138/228 (60%), Positives = 174/228 (76%), Gaps = 8/228 (3%)

Query: 1   MGRVKVQIKRIENTTNRQVTFSKRRNGLVKKAYELSVLCDVDVALIMFSPSGRVSLFSGN 60
           MGRVK+ IK+IENTTNRQVTFSKRRNGL+KKAYELSVLCDVDVALIMFSPSGR + FSGN
Sbjct: 1   MGRVKLPIKKIENTTNRQVTFSKRRNGLIKKAYELSVLCDVDVALIMFSPSGRATFFSGN 60

Query: 61  KSMEEILARYVNLPEHERGRLRNQEFLQRALGKLRSEANQTYQATSNPTTNTDSHLEEVQ 120
           KS+EEIL RYVNL E E GR+ N+E +Q+ L KL+ EA Q  QA S+ T  +DS +E+++
Sbjct: 61  KSIEEILERYVNLSEGEHGRMHNKEHIQKLLSKLKDEAGQICQAPSSMT--SDSQIEDLR 118

Query: 121 QEIVKCKSQIQNMEKRLRIFEEDPSEMTTLYEIKHREQILEETLKQVRIRKHLLEEICNS 180
           +EI  CKSQ++ MEKRLRIFE DPSE+TTL E ++RE +L +TLKQV++RK +LEE  NS
Sbjct: 119 REIFTCKSQLEEMEKRLRIFEGDPSEITTLSEAEYREYVLRDTLKQVQLRKCVLEEY-NS 177

Query: 181 SSTPATSQAHLPPAETSDHMNGFVTESPNNILEWLPHRDS-QVHNLNI 227
            +T  + Q H   A+T D +NGF++ +  N ++W P  D   V  LN 
Sbjct: 178 HAT-HSPQVH--AAKTVD-VNGFISRASKNPVDWFPQGDPLHVQTLNF 221

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|343160545|emb|CAX16992.1| AGL66 protein [Eschscholzia californica]

 Score =  205 bits (521), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 124/306 (40%), Positives = 185/306 (60%), Gaps = 33/306 (10%)

Query: 1   MGRVKVQIKRIENTTNRQVTFSKRRNGLVKKAYELSVLCDVDVALIMFSPSGRVSLFSGN 60
           MGRVK+QIK+IEN TNRQVTFSKRRNGL+KKAYELS+LCD+D+ALIMFSPSGR+S FSG 
Sbjct: 1   MGRVKLQIKKIENNTNRQVTFSKRRNGLIKKAYELSILCDIDIALIMFSPSGRLSHFSGK 60

Query: 61  KSMEEILARYVNLPEHERGR-LRNQEFLQRALGKLRSEANQTYQATSNPTTNTDSHLEEV 119
           + +E++L RY+NLPEH+RG  ++N+E+L R L KL+SE++   Q  +NP    +S++E++
Sbjct: 61  RRIEDVLTRYINLPEHDRGGIIQNREYLIRTLKKLKSESDIALQL-ANPAA-INSNIEDL 118

Query: 120 QQEIVKCKSQIQNMEKRLRIFEEDPSEMTTLYEIKHREQILEETLKQVRIR-KHLLEEIC 178
            QEI + + +IQ +E+RLRI+E DP +++++ +I+  E+ L +TL ++  R K+LL    
Sbjct: 119 HQEISRHQHEIQMIEERLRIYEPDPLKISSMADIESCEKNLFDTLTRITERKKYLLSNQQ 178

Query: 179 NSSSTPATSQAHLPPAETSDHMNGFVTESPNNILEWLP---HRDSQVHNLNILDSNGLLP 235
            +S  P+  Q ++ P E         T   N ++ W+P   H  +Q++    ++S+ L P
Sbjct: 179 IASYDPSDIQMYMDPQEGMG-----STSFRNEVVNWMPDHQHNPNQIY----VESHSLSP 229

Query: 236 VSDEPQEATEILVPPLNMFRGHNMNIDGQISRRDGLEDDNNDMQRPQFGQVIDVNFSPWT 295
           + D             NMF         Q+     L  D   M         + N  PW 
Sbjct: 230 LRDHQS----------NMFH-------EQLQHGSSLNVDPRSMGECHVNNQTEGNLPPWN 272

Query: 296 EFYPSG 301
           + Y S 
Sbjct: 273 QTYTSA 278

Source: Eschscholzia californica

Species: Eschscholzia californica

Genus: Eschscholzia

Family: Papaveraceae

Order: Ranunculales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296082461|emb|CBI21466.3| unnamed protein product [Vitis vinifera]

 Score =  199 bits (507), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 123/269 (45%), Positives = 165/269 (61%), Gaps = 25/269 (9%)

Query: 1   MGRVKVQIKRIENTTNRQVTFSKRRNGLVKKAYELSVLCDVDVALIMFSPSGRVSLFSGN 60
           MGRVK+QIKRIEN TNRQVTFSKRRNGL+KKAYELSVLCD+D+ALIMFS SGR+S FSG 
Sbjct: 1   MGRVKLQIKRIENNTNRQVTFSKRRNGLIKKAYELSVLCDIDIALIMFSHSGRLSHFSGK 60

Query: 61  KSMEEILARYVNLPEHERGR-LRNQEFLQRALGKLRSEANQTYQATSNPTTNTDSHLEEV 119
           + +E++L RY+NLP+HERG  L N ++L   L KL++E +   Q  +NP    +S++EE+
Sbjct: 61  RRVEDVLTRYINLPDHERGGILLNVQYLISTLKKLKTENDIALQ-LANPVA-VNSNVEEL 118

Query: 120 QQEIVKCKSQIQNMEKRLRIFEEDPSEMTTLYEIKHREQILEETLKQVRIRKHLLEEICN 179
            QEI   + Q+Q  E++LRIFE DP   T+  E++  E+ L E L +V  RK  L     
Sbjct: 119 NQEINNLQHQLQIAEEQLRIFEPDPLAFTSTGELESCEKNLLEALNRVTERKKYLLSNHL 178

Query: 180 SSSTPATSQAHLPPAETSDHMNGFVTESPNNILEWLP---HRDSQVHNLNILDSNGLLPV 236
           S+  PA+ QA+L      D   G  T   N ++ WLP   H  +Q     +  S+  +P+
Sbjct: 179 STYDPASIQAYL------DSQEGLPTSFENEVMGWLPENGHNHTQ-----MFGSDPCVPL 227

Query: 237 SDEPQ--------EATEILVPPLNMFRGH 257
            + P           T I V P+NM   H
Sbjct: 228 RNHPSTNVYDNLGHGTSINVDPINMGGCH 256

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|343160415|emb|CBJ21246.1| MADS2 protein [Aristolochia fimbriata]

 Score =  192 bits (487), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 103/221 (46%), Positives = 145/221 (65%), Gaps = 9/221 (4%)

Query: 1   MGRVKVQIKRIENTTNRQVTFSKRRNGLVKKAYELSVLCDVDVALIMFSPSGRVSLFSGN 60
           MGRVK+QIKRIENTTNRQVTFSKRRNGL+KKAYEL +LCD+D+ALIMFSPSGR+S FSG 
Sbjct: 1   MGRVKLQIKRIENTTNRQVTFSKRRNGLIKKAYELCILCDIDIALIMFSPSGRLSHFSGK 60

Query: 61  KSMEEILARYVNLPEHER-GRLRNQEFLQRALGKLRSEANQTYQATSNPTTNTDSHLEEV 119
           K +E++L R+++LP+H+R G + N+E+L R L KL+ E++   Q  +NP    ++ +EE+
Sbjct: 61  KRIEDVLTRFISLPDHDREGAIHNREYLIRTLKKLKCESDVAAQ-LANPGA-VNAQIEEL 118

Query: 120 QQEIVKCKSQIQNMEKRLRIFEEDPSEMTTLYEIKHREQILEETLKQVRIRKHLLEEICN 179
           QQEI   + QIQ  E++L +FE DP   T++ E    E+ L + L +V  RK  L     
Sbjct: 119 QQEINGHQHQIQMAEEQLTVFEPDPLRFTSMEEFDDSEKFLVDALTRVTQRKKFLLSNHL 178

Query: 180 SSSTPATSQAHLPPAETSDHMNGFVTESPNNILEWLPHRDS 220
            S  P++   +L      D   G      + +  WLP +++
Sbjct: 179 PSYDPSSIPVYL------DSQEGLAPSFESEVANWLPDQNA 213

Source: Aristolochia fimbriata

Species: Aristolochia fimbriata

Genus: Aristolochia

Family: Aristolochiaceae

Order: Piperales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	310
TAIR|locus:2030621	335	AGL104 "AGAMOUS-like 104" [Ara	0.667	0.617	0.448	1.7e-41
TAIR|locus:2029386	332	AGL66 "AGAMOUS-like 66" [Arabi	0.667	0.623	0.435	7.5e-41
TAIR|locus:2029411	252	AGL67 "AGAMOUS-like 67" [Arabi	0.587	0.722	0.466	9.6e-41
TAIR|locus:2056760	386	AGL30 "AGAMOUS-like 30" [Arabi	0.529	0.424	0.354	1.7e-27
TAIR|locus:2034949	389	AGL65 "AGAMOUS-like 65" [Arabi	0.674	0.537	0.331	1.5e-26
TAIR|locus:2173522	242	AGL8 "AGAMOUS-like 8" [Arabido	0.225	0.289	0.642	1.5e-24
TAIR|locus:2076522	250	SEP2 "SEPALLATA 2" [Arabidopsi	0.225	0.28	0.614	1e-23
UNIPROTKB|Q10PZ9	257	MADS1 "MADS-box transcription	0.690	0.832	0.349	2.3e-23
TAIR|locus:2082618	240	AGL16 "AGAMOUS-like 16" [Arabi	0.222	0.287	0.6	1.1e-22
TAIR|locus:2007186	344	AGL94 "AGAMOUS-like 94" [Arabi	0.541	0.488	0.350	1.3e-22

TAIR|locus:2030621 AGL104 "AGAMOUS-like 104" [Arabidopsis thaliana (taxid:3702)]

 Score = 440 (159.9 bits), Expect = 1.7e-41, P = 1.7e-41
 Identities = 100/223 (44%), Positives = 146/223 (65%)

Query:     1 MGRVKVQIKRIENTTNRQVTFSKRRNGLVKKAYELSVLCDVDVALIMFSPSGRVSLFSGN 60
             MGRVK++IKRIENTTNRQVTFSKRRNGL+KKAYELS+LCD+D+ALIMFSPS R+SLFSG 
Sbjct:     1 MGRVKLEIKRIENTTNRQVTFSKRRNGLIKKAYELSILCDIDIALIMFSPSDRLSLFSGK 60

Query:    61 KSMEEILARYVNLPEHER---------GR---LRNQEFLQRALGKLRSEANQTYQATSNP 108
               +E++ +R++NLP+ ER          R   ++N+E L R L +L++E +   Q T+  
Sbjct:    61 TRIEDVFSRFINLPKQERESALYFPDQNRRPDIQNKECLLRILQQLKTENDIALQVTNPA 120

Query:   109 TTNTDSHLEEVQQEIVKCKSQIQNMEKRLRIFEEDPSEMTTLYEIKHREQILEETLKQV- 167
               N+D  +EE++ E+ + + Q+Q  E+ LR +E DP   TT+ E +  E+ L +TL  V 
Sbjct:   121 AINSD--VEELEHEVCRLQQQLQMAEEELRRYEPDPIRFTTMEEYEVSEKQLLDTLTHVV 178

Query:   168 RIRKHLLEEICNSSSTPATSQAHLPPAETSDHMNGFVTESPNN 210
             + R HL+     SS   +T Q ++     +D + G++ E+  N
Sbjct:   179 QRRDHLMSNHL-SSYEASTMQPNIGGPFVNDVVEGWLPENGTN 220

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009555 "pollen development" evidence=IGI

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

GO:0010584 "pollen exine formation" evidence=RCA

TAIR|locus:2029386 AGL66 "AGAMOUS-like 66" [Arabidopsis thaliana (taxid:3702)]

 Score = 434 (157.8 bits), Expect = 7.5e-41, P = 7.5e-41
 Identities = 98/225 (43%), Positives = 148/225 (65%)

Query:     1 MGRVKVQIKRIENTTNRQVTFSKRRNGLVKKAYELSVLCDVDVALIMFSPSGRVSLFSGN 60
             MGRVK++IKRIENTTNRQVTFSKRRNGL+KKAYELS+LCD+D+AL+MFSPS R+SLFSG 
Sbjct:     1 MGRVKLEIKRIENTTNRQVTFSKRRNGLIKKAYELSILCDIDIALLMFSPSDRLSLFSGK 60

Query:    61 KSMEEILARYVNLPEHERGR------------LRNQEFLQRALGKLRSEANQTYQATSNP 108
               +E++ +RY+NL + ER               +++E+L R L +L++E +   Q T NP
Sbjct:    61 TRIEDVFSRYINLSDQERENALVFPDQSRRPDFQSKEYLLRTLQQLKAENDIALQLT-NP 119

Query:   109 TTNTDSHLEEVQQEIVKCKSQIQNMEKRLRIFEEDPSEMTTLYEIKHREQILEETLKQVR 168
             T   +S +EE++ E+ K + Q+   E+ LR +E DP   TT+ E +  E+ L +TL +V 
Sbjct:   120 TA-INSDVEELEHEVYKLQQQLLMAEEELRKYEPDPIRFTTMEEYETCEKQLMDTLTRVN 178

Query:   169 IRK-HLL--EEICNSSSTPATSQAHLPPAETSDHMNGFVTES-PN 209
              R+ H+L  +++ +  ++    Q  +     +D + G++TE+ PN
Sbjct:   179 QRREHILSQDQLSSYEASALQQQQSMGGPFGNDVVGGWLTENGPN 223

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0009555 "pollen development" evidence=IGI;IMP

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

GO:0010584 "pollen exine formation" evidence=RCA

TAIR|locus:2029411 AGL67 "AGAMOUS-like 67" [Arabidopsis thaliana (taxid:3702)]

 Score = 433 (157.5 bits), Expect = 9.6e-41, P = 9.6e-41
 Identities = 91/195 (46%), Positives = 132/195 (67%)

Query:     1 MGRVKVQIKRIENTTNRQVTFSKRRNGLVKKAYELSVLCDVDVALIMFSPSGRVSLFSGN 60
             MGRVK+++KRIE +TNRQ+TFSKR+ GL+KKAYELS LCD+D+AL+MFSPS R+ LFSG 
Sbjct:     1 MGRVKLELKRIEKSTNRQITFSKRKKGLIKKAYELSTLCDIDLALLMFSPSDRLCLFSGQ 60

Query:    61 KSMEEILARYVNLPEHERGR------------LRNQEFLQRALGKLRSEANQTYQATSNP 108
               +E++LARY+NLP+ ER              ++N+E+L R L KL+ E +   Q     
Sbjct:    61 TRIEDVLARYINLPDQERENAIVFPDQSKRQGIQNKEYLLRTLEKLKIEDDMALQINEPR 120

Query:   109 TTNTDSHLEEVQQEIVKCKSQIQNMEKRLRIFEEDPSEMTTLYEIKHREQILEETLKQV- 167
                T+S++EE++QE+ + + Q+Q  E+ LR FE DP  +T++ EI+  E  L  TL +V 
Sbjct:   121 PEATNSNVEELEQEVCRLQQQLQISEEELRKFEPDPMRLTSMEEIEACEANLINTLTRVV 180

Query:   168 RIRKHLLEEICNSSS 182
             + R+HLL + C + S
Sbjct:   181 QRREHLLRKSCEAQS 195

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

GO:0009686 "gibberellin biosynthetic process" evidence=RCA

GO:0009740 "gibberellic acid mediated signaling pathway" evidence=RCA

GO:0016114 "terpenoid biosynthetic process" evidence=RCA

TAIR|locus:2056760 AGL30 "AGAMOUS-like 30" [Arabidopsis thaliana (taxid:3702)]

 Score = 278 (102.9 bits), Expect = 1.7e-27, Sum P(2) = 1.7e-27
 Identities = 62/175 (35%), Positives = 110/175 (62%)

Query:     1 MGRVKVQIKRIENTTNRQVTFSKRRNGLVKKAYELSVLCDVDVALIMFSPSGRVSLFSGN 60
             MGRVK++IK++ENT  RQ TF+KR+NG++KKA ELS+LCD+D+ L+MFSP+G+ ++  G 
Sbjct:     1 MGRVKLKIKKLENTNGRQSTFAKRKNGILKKANELSILCDIDIVLLMFSPTGKAAICCGT 60

Query:    61 KS-MEEILARYVNLPEHERGRLRNQ--EFLQRALGKLRSEAN-QTYQATSNPTTNTDSHL 116
             +S MEE++A++  +   ER + + +  E L++   KL  + N + + A+SN T      +
Sbjct:    61 RSSMEEVIAKFSQVTPQERTKRKFESLENLKKTFQKLDHDVNIREFIASSNST------V 114

Query:   117 EEVQQEIVKCKSQIQNMEKRLRIFEEDPSEMTTLYEIKHREQILEETLKQVRIRK 171
             E++  +    +++I  +  RL  + E P ++  +  +   E  + ++L Q+R  K
Sbjct:   115 EDLSTQARILQARISEIHGRLSYWTE-PDKINNVEHLGQLEISIRQSLDQLRAHK 168

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0009555 "pollen development" evidence=IGI

GO:0010584 "pollen exine formation" evidence=RCA

TAIR|locus:2034949 AGL65 "AGAMOUS-like 65" [Arabidopsis thaliana (taxid:3702)]

 Score = 299 (110.3 bits), Expect = 1.5e-26, P = 1.5e-26
 Identities = 76/229 (33%), Positives = 129/229 (56%)

Query:     1 MGRVKVQIKRIENTTNRQVTFSKRRNGLVKKAYELSVLCDVDVALIMFSPSGRVSLFSGN 60
             MGRVK++IKR+E+T+NRQVT++KR+NG++KKA ELS+LCD+D+ L+MFSP+GR + F G 
Sbjct:     1 MGRVKLKIKRLESTSNRQVTYTKRKNGILKKAKELSILCDIDIVLLMFSPTGRATAFHGE 60

Query:    61 KS-MEEILARYVNLPEHERGR--LRNQEFLQRALGKLRSEAN-QTYQATSNPTTNTDSHL 116
              S +EE+++++  L   ER +  L + E L++   KL  + N   +    N T      +
Sbjct:    61 HSCIEEVISKFAQLTPQERTKRKLESLEALKKTFKKLDHDVNIHDFLGARNQT------I 114

Query:   117 EEVQQEIVKCKSQIQNMEKRLRIFEE-DPSEMTTLYEIKHREQILEETLKQVRIRKHLLE 175
             E +  ++   ++Q+    +RL  +   D  E T   ++   E+ L +++++++I K   E
Sbjct:   115 EGLSNQVAIYQAQLMECHRRLSCWTNIDRIENTEHLDLL--EESLRKSIERIQIHK---E 169

Query:   176 EICNSSSTP---ATSQAHLPPAETSDHMNGFVTESPNNILEWLPHRDSQ 221
                 +   P   AT+Q H    +    M G  +    + + WLP  D Q
Sbjct:   170 HYRKNQLLPIECATTQFH-SGIQLPMAMGGNSSMQEAHSMSWLPDNDHQ 217

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0009555 "pollen development" evidence=IGI

TAIR|locus:2173522 AGL8 "AGAMOUS-like 8" [Arabidopsis thaliana (taxid:3702)]

 Score = 227 (85.0 bits), Expect = 1.5e-24, Sum P(2) = 1.5e-24
 Identities = 45/70 (64%), Positives = 57/70 (81%)

Query:     1 MGRVKVQIKRIENTTNRQVTFSKRRNGLVKKAYELSVLCDVDVALIMFSPSGRVSLFSGN 60
             MGR +VQ+KRIEN  NRQVTFSKRR+GL+KKA+E+SVLCD +VALI+FS  G++  +S +
Sbjct:     1 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSSKGKLFEYSTD 60

Query:    61 KSMEEILARY 70
               ME IL RY
Sbjct:    61 SCMERILERY 70

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0009911 "positive regulation of flower development" evidence=TAS

GO:0010077 "maintenance of inflorescence meristem identity" evidence=IGI

GO:0031540 "regulation of anthocyanin biosynthetic process" evidence=RCA

GO:0048481 "ovule development" evidence=RCA

GO:0010154 "fruit development" evidence=IMP

TAIR|locus:2076522 SEP2 "SEPALLATA 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 217 (81.4 bits), Expect = 1.0e-23, Sum P(2) = 1.0e-23
 Identities = 43/70 (61%), Positives = 55/70 (78%)

Query:     1 MGRVKVQIKRIENTTNRQVTFSKRRNGLVKKAYELSVLCDVDVALIMFSPSGRVSLFSGN 60
             MGR +V++KRIEN  NRQVTF+KRRNGL+KKAYELSVLCD +V+LI+FS  G++  F   
Sbjct:     1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVSLIVFSNRGKLYEFCST 60

Query:    61 KSMEEILARY 70
              +M + L RY
Sbjct:    61 SNMLKTLERY 70

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0009908 "flower development" evidence=NAS

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0048481 "ovule development" evidence=RCA;IMP

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

GO:0009886 "post-embryonic morphogenesis" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0010048 "vernalization response" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048440 "carpel development" evidence=RCA

GO:0048441 "petal development" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

GO:0048507 "meristem development" evidence=RCA

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|Q10PZ9 MADS1 "MADS-box transcription factor 1" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 269 (99.8 bits), Expect = 2.3e-23, P = 2.3e-23
 Identities = 81/232 (34%), Positives = 125/232 (53%)

Query:     1 MGRVKVQIKRIENTTNRQVTFSKRRNGLVKKAYELSVLCDVDVALIMFSPSGRVSLFSGN 60
             MGR KV++KRIEN  +RQVTF+KRRNGL+KKAYELS+LCD +VALI+FS  GR+  FS +
Sbjct:     1 MGRGKVELKRIENKISRQVTFAKRRNGLLKKAYELSLLCDAEVALIIFSGRGRLFEFSSS 60

Query:    61 KSMEEILARY--VNLPEHERGRLRNQEFLQRALGKLRSEANQTYQATSNPTTNTDSHLEE 118
               M + L RY   N    +     N+   Q  L KL++   +  Q T       D     
Sbjct:    61 SCMYKTLERYRSCNYNSQDAAAPENEINYQEYL-KLKTRV-EFLQTTQRNILGEDLGPLS 118

Query:   119 VQQEIVKCKSQIQNMEKRLRIFEEDPSEMTTLYEIKHREQILEETLKQVRIRKHLLEEIC 178
             ++ E+ + ++QI+   K++R   ++ + +  L+++K +EQ L++  K   +RK L E   
Sbjct:   119 MK-ELEQLENQIEVSLKQIRS-RKNQALLDQLFDLKSKEQQLQDLNKD--LRKKLQE--- 171

Query:   179 NSSSTPATSQAHLPPAETSDHMNG--FVTESPNNILEWL-PHRDSQVHNLNI 227
                 T A +  H+   +   H      + + P++    L PH D   H+L I
Sbjct:   172 ----TSAENVLHMSWQDGGGHSGSSTVLADQPHHHQGLLHPHPDQGDHSLQI 219

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2082618 AGL16 "AGAMOUS-like 16" [Arabidopsis thaliana (taxid:3702)]

 Score = 212 (79.7 bits), Expect = 1.1e-22, Sum P(2) = 1.1e-22
 Identities = 42/70 (60%), Positives = 57/70 (81%)

Query:     1 MGRVKVQIKRIENTTNRQVTFSKRRNGLVKKAYELSVLCDVDVALIMFSPSGRVSLFSGN 60
             MGR K+ IKRI N+T+RQVTFSKRRNGL+KKA EL++LCD +V +I+FS +GR+  FS +
Sbjct:     1 MGRGKIAIKRINNSTSRQVTFSKRRNGLLKKAKELAILCDAEVGVIIFSSTGRLYDFSSS 60

Query:    61 KSMEEILARY 70
              SM+ ++ RY
Sbjct:    61 -SMKSVIERY 69

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0008134 "transcription factor binding" evidence=IPI

GO:0042803 "protein homodimerization activity" evidence=IDA

GO:0010440 "stomatal lineage progression" evidence=IMP

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0009556 "microsporogenesis" evidence=RCA

GO:0048481 "ovule development" evidence=RCA

GO:0052543 "callose deposition in cell wall" evidence=RCA

TAIR|locus:2007186 AGL94 "AGAMOUS-like 94" [Arabidopsis thaliana (taxid:3702)]

 Score = 262 (97.3 bits), Expect = 1.3e-22, P = 1.3e-22
 Identities = 60/171 (35%), Positives = 103/171 (60%)

Query:     1 MGRVKVQIKRIENTTNRQVTFSKRRNGLVKKAYELSVLCDVDVALIMFSPSGRVSLFSGN 60
             MGRVK++IK+++N   RQ T++KRR+G++KKA ELS+LCD+DV L+MFSP G+ S+  G 
Sbjct:     1 MGRVKLKIKKLQNMNGRQCTYTKRRHGIMKKAKELSILCDIDVVLLMFSPMGKASICIGK 60

Query:    61 KSMEEILARYVNLPEHERGRLRNQEFLQRALGKLRSEANQTYQATSNPTTNTDSHLEEVQ 120
              S+ E++A++  L   ER + R  E L+ AL K   +AN     +      +   +E + 
Sbjct:    61 HSIGEVIAKFAQLSPQERAK-RKLENLE-ALRKTFMKANHDIDISKFLDRISTPTVEVLS 118

Query:   121 QEIVKCKSQIQNMEKRLRIFEEDPSEMTTLYEIKHREQILEETLKQVRIRK 171
             ++I   ++Q+ ++  RL  +  D   + ++  ++  E  L ++L Q+  RK
Sbjct:   119 EKIRFLQTQLSDIHTRLSYWT-DVDNIDSVDVLQQLEHSLRQSLAQIYGRK 168

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0046983 "protein dimerization activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	310
cd00265	77	cd00265, MADS_MEF2_like, MEF2 (myocyte enhancer fa	4e-38
smart00432	59	smart00432, MADS, MADS domain	2e-32
cd00120	59	cd00120, MADS, MADS: MCM1, Agamous, Deficiens, and	5e-31
cd00266	83	cd00266, MADS_SRF_like, SRF-like/Type I subfamily	2e-30
pfam00319	51	pfam00319, SRF-TF, SRF-type transcription factor (	2e-22
COG5068	412	COG5068, ARG80, Regulator of arginine metabolism a	2e-06
pfam01486	100	pfam01486, K-box, K-box region	8e-05

>gnl|CDD|238165 cd00265, MADS_MEF2_like, MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators

 Score =  129 bits (327), Expect = 4e-38
 Identities = 49/74 (66%), Positives = 61/74 (82%), Gaps = 1/74 (1%)

Query: 2  GRVKVQIKRIENTTNRQVTFSKRRNGLVKKAYELSVLCDVDVALIMFSPSGRVSLFSGNK 61
          GR K++IKRIEN+TNRQVTFSKRRNGL+KKA+ELSVLCD +VALI+FS SG++  FS + 
Sbjct: 1  GRGKIEIKRIENSTNRQVTFSKRRNGLLKKAHELSVLCDAEVALIIFSSSGKLYEFS-SP 59

Query: 62 SMEEILARYVNLPE 75
          SME+I+ RY     
Sbjct: 60 SMEKIIERYQKTSG 73

Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I subgroup mainly in position of the alpha helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi. Length = 77

>gnl|CDD|197721 smart00432, MADS, MADS domain

 Score =  113 bits (286), Expect = 2e-32
 Identities = 42/57 (73%), Positives = 51/57 (89%)

Query: 2  GRVKVQIKRIENTTNRQVTFSKRRNGLVKKAYELSVLCDVDVALIMFSPSGRVSLFS 58
          GR K++IKRIEN TNRQVTFSKRRNGL KKA+ELSVLCD +VALI+FSP+G++  F+
Sbjct: 1  GRRKIEIKRIENKTNRQVTFSKRRNGLFKKAHELSVLCDAEVALIVFSPTGKLYEFA 57

Length = 59

>gnl|CDD|238067 cd00120, MADS, MADS: MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptonal regulators

 Score =  110 bits (278), Expect = 5e-31
 Identities = 41/57 (71%), Positives = 49/57 (85%)

Query: 2  GRVKVQIKRIENTTNRQVTFSKRRNGLVKKAYELSVLCDVDVALIMFSPSGRVSLFS 58
          GR K++IKRIEN T+RQVTFSKRRNGL KKA ELSVLCD +VA+I+FSPSG++  F 
Sbjct: 1  GRGKIEIKRIENKTSRQVTFSKRRNGLFKKASELSVLCDAEVAVIVFSPSGKLYEFW 57

Binds DNA and exists as hetero and homo-dimers. Composed of 2 main subgroups: SRF-like/Type I and MEF2-like (myocyte enhancer factor 2)/ Type II. These subgroups differ mainly in position of the alpha 2 helix responsible for the dimerization interface; Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi. Length = 59

>gnl|CDD|238166 cd00266, MADS_SRF_like, SRF-like/Type I subfamily of MADS (MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators

 Score =  109 bits (275), Expect = 2e-30
 Identities = 40/82 (48%), Positives = 56/82 (68%)

Query: 2  GRVKVQIKRIENTTNRQVTFSKRRNGLVKKAYELSVLCDVDVALIMFSPSGRVSLFSGNK 61
          GR K++IKRIEN   R VTFSKRR GL KKA ELS LC  +VA+I++SPSG++ +F  + 
Sbjct: 1  GRKKIKIKRIENKKKRAVTFSKRRQGLFKKASELSTLCGAEVAVIVYSPSGKLYVFWPSS 60

Query: 62 SMEEILARYVNLPEHERGRLRN 83
           +E +++R+  L   ER +   
Sbjct: 61 EVEGVISRFEVLSALERKKKAV 82

Binds DNA and exists as hetero- and homo-dimers. Differs from the MEF-like/Type II subgroup mainly in position of the alpha 2 helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi. Length = 83

>gnl|CDD|109379 pfam00319, SRF-TF, SRF-type transcription factor (DNA-binding and dimerisation domain)

 Score = 87.4 bits (217), Expect = 2e-22
 Identities = 34/50 (68%), Positives = 44/50 (88%)

Query: 9  KRIENTTNRQVTFSKRRNGLVKKAYELSVLCDVDVALIMFSPSGRVSLFS 58
          KRIEN +NRQVTFSKRRNG+ KKA+ELSVLCD +VA+I+FS +G++  +S
Sbjct: 1  KRIENKSNRQVTFSKRRNGIFKKAHELSVLCDAEVAVIIFSSTGKLYEYS 50

Length = 51

>gnl|CDD|227400 COG5068, ARG80, Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]

 Score = 48.9 bits (116), Expect = 2e-06
 Identities = 27/58 (46%), Positives = 38/58 (65%)

Query: 1   MGRVKVQIKRIENTTNRQVTFSKRRNGLVKKAYELSVLCDVDVALIMFSPSGRVSLFS 58
           +   K+ I  I N T R VTFSKR++G+ KKA+ELSVL   +V L++ S +G V  F+
Sbjct: 81  VTGRKIGISYITNKTKRSVTFSKRKHGINKKAFELSVLTGTEVLLLVISENGLVHTFT 138

Length = 412

>gnl|CDD|216525 pfam01486, K-box, K-box region

 Score = 40.6 bits (96), Expect = 8e-05
 Identities = 29/79 (36%), Positives = 42/79 (53%), Gaps = 5/79 (6%)

Query: 102 YQATSNPTTNTDSHLEEVQQEIVKCKSQIQNMEKRLR-IFEEDPSEMTTLYEIKHREQIL 160
           YQ  S      +S  E +QQE  K K Q +N+++  R +  ED   + +L E++  EQ L
Sbjct: 1   YQKLSG-NDLWESKYENLQQEAAKLKKQNENLQREQRHLLGEDLGSL-SLKELQQLEQQL 58

Query: 161 EETLKQVRIRK--HLLEEI 177
           E  LK +R RK   LL +I
Sbjct: 59  ENGLKHIRSRKNELLLNQI 77

The K-box region is commonly found associated with SRF-type transcription factors see pfam00319. The K-box is a possible coiled-coil structure. Possible role in multimer formation. Length = 100

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	310
KOG0014	195	consensus MADS box transcription factor [Transcrip	99.97
cd00265	77	MADS_MEF2_like MEF2 (myocyte enhancer factor 2)-li	99.94
cd00266	83	MADS_SRF_like SRF-like/Type I subfamily of MADS (M	99.93
smart00432	59	MADS MADS domain.	99.9
cd00120	59	MADS MADS: MCM1, Agamous, Deficiens, and SRF (seru	99.9
PF00319	51	SRF-TF: SRF-type transcription factor (DNA-binding	99.85
KOG0015	338	consensus Regulator of arginine metabolism and rel	99.68
COG5068	412	ARG80 Regulator of arginine metabolism and related	99.21
PF01486	100	K-box: K-box region; InterPro: IPR002487 MADS gene	99.16
PF07106	169	TBPIP: Tat binding protein 1(TBP-1)-interacting pr	87.35

>KOG0014 consensus MADS box transcription factor [Transcription]

Probab=99.97  E-value=3e-31  Score=235.33  Aligned_cols=162  Identities=40%  Similarity=0.578  Sum_probs=120.7

Q ss_pred             CCccccceEEeccCCCcceeccccccchhhhhhhhhcccCcceeehhcCCCCccccccCC-chhHHHHHhhcCCchhhhc
Q 046530            1 MGRVKVQIKRIENTTNRQVTFSKRRNGLVKKAYELSVLCDVDVALIMFSPSGRVSLFSGN-KSMEEILARYVNLPEHERG   79 (310)
Q Consensus         1 MgR~Ki~ik~Ien~~~R~~Tf~KRr~GL~KKa~ELs~LC~~~v~livfsp~gk~~~~~~~-~sve~VI~RY~~lpe~~r~   79 (310)
                      |||+||+|++|+|+++|+|||+|||.||||||+||||||||+||+|||||+|++|.|++. .++.+|++||...++..+.
T Consensus         1 M~R~ki~i~~Ien~~~RqvTFsKRr~GL~KKA~ELsvLCd~eiavIifsp~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~   80 (195)
T KOG0014|consen    1 MGRGKIEIKRIENESSRQVTFSKRRNGLFKKASELSVLCDAEIAVIVFSPSGKLYEFGSSDESVDAVVDRFLNLTEPSRK   80 (195)
T ss_pred             CCCCccceeeccccchhhhhhHHHHhhHHHHHHHHHHhcCCeEEEEEECCCCCccccCCcchhHHHHHHHHHhhhhhhhc
Confidence            999999999999999999999999999999999999999999999999999999988543 3399999999998887764


Q ss_pred             -ccccHH-HHHHH-HhhhhhhhhhhccccCCCCCCCchhHHHHHHHHHHHHHHHHHHH---HHHhhhcCCCCCCCCH-HH
Q 046530           80 -RLRNQE-FLQRA-LGKLRSEANQTYQATSNPTTNTDSHLEEVQQEIVKCKSQIQNME---KRLRIFEEDPSEMTTL-YE  152 (310)
Q Consensus        80 -k~~~~e-~l~~~-l~Kl~~~~~~~~q~~ss~~~~~d~~lEeLq~Ei~kLk~qie~le---~~lR~~~Gd~l~~lSl-~E  152 (310)
                       +..+.+ ++... +.++..+...           .....+....+...++...+.++   ...+.+.|..+..++. .+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~~~~  149 (195)
T KOG0014|consen   81 KKRVNLESFLRNKKLTELVEEEEK-----------EELKLQLKKSLESSLKVDPEDLELLELEQRKLTGEDLQSLSSLNE  149 (195)
T ss_pred             ccccchhhHhhhhhhhcccchhhh-----------hhccchhhhhhhhhhhcchhhhhhhHHHHHHHhccccccCCHHHH
Confidence             333333 44333 1111110000           00000123334444555555544   3467888999999998 99


Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q 046530          153 IKHREQILEETLKQVRIRKHL  173 (310)
Q Consensus       153 L~~LE~~LE~sL~rVR~RK~~  173 (310)
                      |..++.+|+.++..+|.++..
T Consensus       150 l~~~~~~l~~~~~~~~~~~~~  170 (195)
T KOG0014|consen  150 LNSLESQLESSLHNSRSSKSK  170 (195)
T ss_pred             hcchhhHHHHhhcCCCCCCCc
Confidence            999999999999999888843

>cd00265 MADS_MEF2_like MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators

Probab=99.94  E-value=6.6e-28  Score=186.08  Aligned_cols=72  Identities=68%  Similarity=0.989  Sum_probs=68.8

Q ss_pred             CccccceEEeccCCCcceeccccccchhhhhhhhhcccCcceeehhcCCCCccccccCCchhHHHHHhhcCCc
Q 046530            2 GRVKVQIKRIENTTNRQVTFSKRRNGLVKKAYELSVLCDVDVALIMFSPSGRVSLFSGNKSMEEILARYVNLP   74 (310)
Q Consensus         2 gR~Ki~ik~Ien~~~R~~Tf~KRr~GL~KKa~ELs~LC~~~v~livfsp~gk~~~~~~~~sve~VI~RY~~lp   74 (310)
                      ||+||+|++|+|+..|++||+|||.||||||+|||+||||+||+|||||+|+++.|++ +++++||+||.+.+
T Consensus         1 gr~ki~i~~i~~~~~r~~tf~kR~~gl~kKa~Els~Lc~~~v~lvv~sp~gk~~~f~s-~s~~~vl~ry~~~~   72 (77)
T cd00265           1 GRGKIEIKRIENSTNRQVTFSKRRNGLLKKAHELSVLCDAEVALIIFSSSGKLYEFSS-PSMEKIIERYQKTS   72 (77)
T ss_pred             CCCcceeEEecCccHHHHHHHHhhhhhhhcceeheeccCCceeEEEEcCCCceEEecC-CCHHHHHHHHHhcc
Confidence            8999999999999999999999999999999999999999999999999999999964 67899999998764

Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I subgroup mainly in position of the alpha helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.

>cd00266 MADS_SRF_like SRF-like/Type I subfamily of MADS (MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators

Probab=99.93  E-value=5.5e-27  Score=183.39  Aligned_cols=79  Identities=51%  Similarity=0.820  Sum_probs=73.1

Q ss_pred             CccccceEEeccCCCcceeccccccchhhhhhhhhcccCcceeehhcCCCCccccccCCchhHHHHHhhcCCchhhhcc
Q 046530            2 GRVKVQIKRIENTTNRQVTFSKRRNGLVKKAYELSVLCDVDVALIMFSPSGRVSLFSGNKSMEEILARYVNLPEHERGR   80 (310)
Q Consensus         2 gR~Ki~ik~Ien~~~R~~Tf~KRr~GL~KKa~ELs~LC~~~v~livfsp~gk~~~~~~~~sve~VI~RY~~lpe~~r~k   80 (310)
                      ||+||+|++|+|+.+|++||+|||.||||||+||||||||+||+|||||+|+++.|++..++..+|++|..+++.++.+
T Consensus         1 gr~Ki~i~~I~~~~~R~~tf~KRk~gl~kKa~ELs~Lc~~~v~~iv~sp~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~   79 (83)
T cd00266           1 GRKKIKIKRIENKKKRAVTFSKRRQGLFKKASELSTLCGAEVAVIVYSPSGKLYVFWPSSEVEGVISRFEVLSALERKK   79 (83)
T ss_pred             CCccceeEEeeccchhhhhHHHhhhhHHHHHHHHHHhhCCcEEEEEECCCCCcceecCcHHHHHHHHHHhhcCHhhhhc
Confidence            8999999999999999999999999999999999999999999999999999888865445999999999998876653

Binds DNA and exists as hetero- and homo-dimers. Differs from the MEF-like/Type II subgroup mainly in position of the alpha 2 helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.

>smart00432 MADS MADS domain

Probab=99.90  E-value=4.4e-25  Score=161.90  Aligned_cols=58  Identities=72%  Similarity=1.079  Sum_probs=56.2

Q ss_pred             CccccceEEeccCCCcceeccccccchhhhhhhhhcccCcceeehhcCCCCccccccC
Q 046530            2 GRVKVQIKRIENTTNRQVTFSKRRNGLVKKAYELSVLCDVDVALIMFSPSGRVSLFSG   59 (310)
Q Consensus         2 gR~Ki~ik~Ien~~~R~~Tf~KRr~GL~KKa~ELs~LC~~~v~livfsp~gk~~~~~~   59 (310)
                      ||+||+|++|+|++.|++||+|||.||+|||+|||+||||+||+|||||+|+++.|++
T Consensus         1 gR~Ki~i~~I~~~~~R~~tf~kRk~gl~kKa~Els~Lc~~~v~~iv~sp~g~~~~~~~   58 (59)
T smart00432        1 GRRKIEIKRIENKTNRQVTFSKRRNGLFKKAHELSVLCDAEVALIVFSPTGKLYEFAS   58 (59)
T ss_pred             CCCcceeEEeeCcchhhhhhHhhhhhHHHHHHHHhhccCCeEEEEEECCCCCeeeccC
Confidence            8999999999999999999999999999999999999999999999999999998853

>cd00120 MADS MADS: MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptonal regulators

Probab=99.90  E-value=9.2e-25  Score=160.27  Aligned_cols=58  Identities=71%  Similarity=1.023  Sum_probs=56.4

Q ss_pred             CccccceEEeccCCCcceeccccccchhhhhhhhhcccCcceeehhcCCCCccccccC
Q 046530            2 GRVKVQIKRIENTTNRQVTFSKRRNGLVKKAYELSVLCDVDVALIMFSPSGRVSLFSG   59 (310)
Q Consensus         2 gR~Ki~ik~Ien~~~R~~Tf~KRr~GL~KKa~ELs~LC~~~v~livfsp~gk~~~~~~   59 (310)
                      ||+||+|++|+|+..|++||+|||.||+|||+|||+||||+||+|||||+|+++.|++
T Consensus         1 gr~Ki~i~~I~~~~~R~~tf~kR~~gl~kKa~Els~Lc~~~v~~iv~sp~g~~~~~~~   58 (59)
T cd00120           1 GRGKIEIKRIENKTSRQVTFSKRRNGLFKKASELSVLCDAEVAVIVFSPSGKLYEFWS   58 (59)
T ss_pred             CCccceeEEeeCcchhhhhHHHHhchHHHhhhhheeccCCcEEEEEECCCCCcccccC
Confidence            8999999999999999999999999999999999999999999999999999999864

Binds DNA and exists as hetero and homo-dimers. Composed of 2 main subgroups: SRF-like/Type I and MEF2-like (myocyte enhancer factor 2)/ Type II. These subgroups differ mainly in position of the alpha 2 helix responsible for the dimerization interface; Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.

>PF00319 SRF-TF: SRF-type transcription factor (DNA-binding and dimerisation domain); InterPro: IPR002100 Human serum response factor (SRF) is a ubiquitous nuclear protein important for cell proliferation and differentiation

Probab=99.85  E-value=1.9e-23  Score=148.78  Aligned_cols=51  Identities=65%  Similarity=1.002  Sum_probs=46.6

Q ss_pred             EEeccCCCcceeccccccchhhhhhhhhcccCcceeehhcCCCCccccccC
Q 046530            9 KRIENTTNRQVTFSKRRNGLVKKAYELSVLCDVDVALIMFSPSGRVSLFSG   59 (310)
Q Consensus         9 k~Ien~~~R~~Tf~KRr~GL~KKa~ELs~LC~~~v~livfsp~gk~~~~~~   59 (310)
                      |+|+|++.|++||+|||.||||||+|||+||||+||+|||||+|+++.||+
T Consensus         1 K~I~n~~~R~~tf~KRk~gL~KKa~ELs~LC~~~v~~iv~~~~g~~~~f~s   51 (51)
T PF00319_consen    1 KRIENKSRRKVTFSKRKKGLFKKASELSTLCGVDVALIVFSPDGKLYTFPS   51 (51)
T ss_dssp             S--SSHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEEETTSEEEEEES
T ss_pred             CCccchhHhHhHHHHHHhhhhhccceeeeecCCeEEEEEECCCCCEEEecC
Confidence            589999999999999999999999999999999999999999999999974

SRF function is essential for transcriptional regulation of numerous growth-factor-inducible genes, such as c-fos oncogene and muscle-specific actin genes. A core domain of around 90 amino acids is sufficient for the activities of DNA-binding, dimerisation and interaction with accessory factors. Within the core is a DNA-binding region, designated the MADS box [], that is highly similar to many eukaryotic regulatory proteins: among these are MCM1, the regulator of cell type-specific genes in fission yeast; DSRF, a Drosophila trachea development factor; the MEF2 family of myocyte-specific enhancer factors; and the Agamous and Deficiens families of plant homeotic proteins. In SRF, the MADS box has been shown to be involved in DNA-binding and dimerisation []. Proteins belonging to the MADS family function as dimers, the primary DNA-binding element of which is an anti-parallel coiled coil of two amphipathic alpha-helices, one from each subunit. The DNA wraps around the coiled coil allowing the basic N-termini of the helices to fit into the DNA major groove. The chain extending from the helix N-termini reaches over the DNA backbone and penetrates into the minor groove. A 4-stranded, anti-parallel beta-sheet packs against the coiled-coil face opposite the DNA and is the central element of the dimerisation interface. The MADS-box domain is commonly found associated with K-box region see IPR002487 from INTERPRO ; GO: 0003677 DNA binding, 0046983 protein dimerization activity; PDB: 1MNM_B 1N6J_A 1TQE_S 3MU6_D 3P57_I 1EGW_A 1C7U_B 3KOV_A 1HBX_A 1K6O_C ....

>KOG0015 consensus Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]

Probab=99.68  E-value=5.9e-18  Score=157.58  Aligned_cols=64  Identities=47%  Similarity=0.736  Sum_probs=58.6

Q ss_pred             CccccceEEeccCCCcceeccccccchhhhhhhhhcccCcceeehhcCCCCccccccCCchhHHH
Q 046530            2 GRVKVQIKRIENTTNRQVTFSKRRNGLVKKAYELSVLCDVDVALIMFSPSGRVSLFSGNKSMEEI   66 (310)
Q Consensus         2 gR~Ki~ik~Ien~~~R~~Tf~KRr~GL~KKa~ELs~LC~~~v~livfsp~gk~~~~~~~~sve~V   66 (310)
                      ||+||+|++|+|+.+|.+||+|||.||||||+|||||+|.+|.|+|.|++|-+|+|+ .+.++-|
T Consensus        63 gr~kik~eyIenK~rR~~tFSKRK~GImKKAyELs~LTGtqVllLVaSEtGhVyTFa-TpKLep~  126 (338)
T KOG0015|consen   63 GRVKIKMEYIENKLRRYVTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFA-TPKLEPM  126 (338)
T ss_pred             ceeeccchhhcccceeeeeehhhhhhhHHHHHHhhhcccceEEEEEEecCcceEEec-ccccccc
Confidence            799999999999999999999999999999999999999999999999999999994 3433333

>COG5068 ARG80 Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]

Probab=99.21  E-value=2.8e-12  Score=124.54  Aligned_cols=58  Identities=47%  Similarity=0.676  Sum_probs=56.8

Q ss_pred             CCccccceEEeccCCCcceeccccccchhhhhhhhhcccCcceeehhcCCCCcccccc
Q 046530            1 MGRVKVQIKRIENTTNRQVTFSKRRNGLVKKAYELSVLCDVDVALIMFSPSGRVSLFS   58 (310)
Q Consensus         1 MgR~Ki~ik~Ien~~~R~~Tf~KRr~GL~KKa~ELs~LC~~~v~livfsp~gk~~~~~   58 (310)
                      |||+||.|.+|+|+.+|.|||+|||.||+|||+||++|+|.+|.++|.|.+|+++.|+
T Consensus        81 ~~~~~~~is~i~nk~~r~vtf~Krk~gI~kka~ElsvLt~~~vl~lvise~g~v~tf~  138 (412)
T COG5068          81 VTGRKIGISYITNKTKRSVTFSKRKHGINKKAFELSVLTGTEVLLLVISENGLVHTFT  138 (412)
T ss_pred             cccccCCcccccCcccccchhhhhhhhhhhhhhhhhhccCCceEEEEecCCCceeeec
Confidence            7999999999999999999999999999999999999999999999999999999995

>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development

Probab=99.16  E-value=1.4e-10  Score=93.51  Aligned_cols=67  Identities=40%  Similarity=0.459  Sum_probs=63.8

Q ss_pred             CCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046530          108 PTTNTDSHLEEVQQEIVKCKSQIQNMEKRLRIFEEDPSEMTTLYEIKHREQILEETLKQVRIRKHLL  174 (310)
Q Consensus       108 ~~~~~d~~lEeLq~Ei~kLk~qie~le~~lR~~~Gd~l~~lSl~EL~~LE~~LE~sL~rVR~RK~~L  174 (310)
                      +...++..++.++.|+++++.+++.++..+|++.|++++.+|++||..||++|+.+|.+||+||..+
T Consensus         6 ~~~~~~~~~e~~~~e~~~L~~~~~~L~~~~R~~~GedL~~Ls~~eL~~LE~~Le~aL~~VR~rK~~~   72 (100)
T PF01486_consen    6 GTDLWDSQHEELQQEIAKLRKENESLQKELRHLMGEDLESLSLKELQQLEQQLESALKRVRSRKDQL   72 (100)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHhhhhhHHHHHHHHHHH
Confidence            3447889999999999999999999999999999999999999999999999999999999999887

The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences

Probab=87.35  E-value=6.8  Score=34.07  Aligned_cols=57  Identities=23%  Similarity=0.293  Sum_probs=49.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 046530          116 LEEVQQEIVKCKSQIQNMEKRLRIFEEDPSEMTTLYEIKHREQILEETLKQVRIRKHL  173 (310)
Q Consensus       116 lEeLq~Ei~kLk~qie~le~~lR~~~Gd~l~~lSl~EL~~LE~~LE~sL~rVR~RK~~  173 (310)
                      .+++..++..++.+++.++.++..+.+ .....|.+|...++.......+..+.||..
T Consensus       111 ~~el~~~i~~l~~e~~~l~~kL~~l~~-~~~~vs~ee~~~~~~~~~~~~k~w~kRKri  167 (169)
T PF07106_consen  111 NEELREEIEELEEEIEELEEKLEKLRS-GSKPVSPEEKEKLEKEYKKWRKEWKKRKRI  167 (169)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            467899999999999999999988876 445578999999999999999999999854

TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	310
1tqe_P	93	Mechanism Of Recruitment Of Class Ii Histone Deacet		5e-16
3kov_A	90	Structure Of Mef2a Bound To Dna Reveals A Completel		3e-15
1n6j_A	93	Structural Basis Of Sequence-Specific Recruitment O		3e-15
3mu6_A	71	Inhibiting The Binding Of Class Iia Histone Deacety		1e-14
1c7u_A	85	Complex Of The Dna Binding Core Domain Of The Trans		3e-14
1egw_A	77	Crystal Structure Of Mef2a Core Bound To Dna Length		9e-14
1mnm_A	100	Yeast Matalpha2MCM1DNA TERNARY TRANSCRIPTION COMPLE		2e-10
1srs_A	92	Serum Response Factor (Srf) Core Complexed With Spe		1e-08
1k6o_B	103	Crystal Structure Of A Ternary Sap-1SRFC-Fos Sre Dn		4e-08

>pdb|1TQE|P Chain P, Mechanism Of Recruitment Of Class Ii Histone Deacetylases By Myocyte Enhancer Factor-2 Length = 93

Iteration: 1
 Score = 81.6 bits (200), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 40/78 (51%), Positives = 56/78 (71%), Gaps = 2/78 (2%)
Query: 1  MGRVKVQIKRIENTTNRQVTFSKRRNGLVKKAYELSVLCDVDVALIMFSPSGRVSLFSGN 60
          MGR K+QI RI +  NRQVTF+KR+ GL+KKAYELSVLCD ++ALI+F+ + R+  ++  
Sbjct: 1  MGRKKIQISRILDQRNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSANRLFQYAST 60
Query: 61 KSMEEILARYVNLPE-HE 77
            M+ +L +Y    E HE
Sbjct: 61 -DMDRVLLKYTEYSEPHE 77

>pdb|3KOV|A Chain A, Structure Of Mef2a Bound To Dna Reveals A Completely Folded Mads-BoxMEF2 DOMAIN THAT RECOGNIZES DNA AND RECRUITS Transcription Co-Factors Length = 90

Iteration: 1
 Score = 79.3 bits (194), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 39/77 (50%), Positives = 56/77 (72%), Gaps = 2/77 (2%)
Query: 2  GRVKVQIKRIENTTNRQVTFSKRRNGLVKKAYELSVLCDVDVALIMFSPSGRVSLFSGNK 61
          GR K+QI RI +  NRQVTF+KR+ GL+KKAYELSVLCD ++ALI+F+ S ++  ++   
Sbjct: 1  GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYAST- 59
Query: 62 SMEEILARYVNLPE-HE 77
           M+++L +Y    E HE
Sbjct: 60 DMDKVLLKYTEYNEPHE 76

>pdb|1N6J|A Chain A, Structural Basis Of Sequence-Specific Recruitment Of Histone Deacetylases By Myocyte Enhancer Factor-2 Length = 93

Iteration: 1
 Score = 79.0 bits (193), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 39/77 (50%), Positives = 55/77 (71%), Gaps = 2/77 (2%)
Query: 2  GRVKVQIKRIENTTNRQVTFSKRRNGLVKKAYELSVLCDVDVALIMFSPSGRVSLFSGNK 61
          GR K+QI RI +  NRQVTF+KR+ GL+KKAYELSVLCD ++ALI+F+ + R+  ++   
Sbjct: 1  GRKKIQISRILDQRNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSANRLFQYAST- 59
Query: 62 SMEEILARYVNLPE-HE 77
           M+ +L +Y    E HE
Sbjct: 60 DMDRVLLKYTEYSEPHE 76

>pdb|3MU6|A Chain A, Inhibiting The Binding Of Class Iia Histone Deacetylases To Myocyte Enhancer Factor-2 By Small Molecules Length = 71

Iteration: 1
 Score = 77.0 bits (188), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 36/69 (52%), Positives = 54/69 (78%), Gaps = 1/69 (1%)
Query: 2  GRVKVQIKRIENTTNRQVTFSKRRNGLVKKAYELSVLCDVDVALIMFSPSGRVSLFSGNK 61
          GR K+QI RI +  NRQVTF+KR+ GL+KKAYELSVLCD ++ALI+F+ S ++  ++ + 
Sbjct: 1  GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYA-ST 59
Query: 62 SMEEILARY 70
           M+++L +Y
Sbjct: 60 DMDKVLLKY 68

>pdb|1C7U|A Chain A, Complex Of The Dna Binding Core Domain Of The Transcription Factor Mef2a With A 20mer Oligonucleotide Length = 85

Iteration: 1
 Score = 75.9 bits (185), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 38/77 (49%), Positives = 55/77 (71%), Gaps = 2/77 (2%)
Query: 2  GRVKVQIKRIENTTNRQVTFSKRRNGLVKKAYELSVLCDVDVALIMFSPSGRVSLFSGNK 61
          GR K+QI RI +  NRQVTF+KR+ GL+KKAYELSVL D ++ALI+F+ S ++  ++   
Sbjct: 1  GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLADAEIALIIFNSSNKLFQYAST- 59
Query: 62 SMEEILARYVNLPE-HE 77
           M+++L +Y    E HE
Sbjct: 60 DMDKVLLKYTEYNEPHE 76

>pdb|1EGW|A Chain A, Crystal Structure Of Mef2a Core Bound To Dna Length = 77

Iteration: 1
 Score = 74.3 bits (181), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 39/77 (50%), Positives = 57/77 (74%), Gaps = 2/77 (2%)
Query: 2  GRVKVQIKRIENTTNRQVTFSKRRNGLVKKAYELSVLCDVDVALIMFSPSGRVSLFSGNK 61
          GR K+QI RI +  NRQVTF+KR+ GL+KKAYELSVLCD ++ALI+F+ S ++  ++ + 
Sbjct: 1  GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYA-ST 59
Query: 62 SMEEILARYVNLPE-HE 77
           M+++L +Y    E HE
Sbjct: 60 DMDKVLLKYTEYNEPHE 76

>pdb|1MNM|A Chain A, Yeast Matalpha2MCM1DNA TERNARY TRANSCRIPTION COMPLEX Crystal Structure Length = 100

Iteration: 1
 Score = 62.8 bits (151), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 32/59 (54%), Positives = 42/59 (71%)
Query: 3  RVKVQIKRIENTTNRQVTFSKRRNGLVKKAYELSVLCDVDVALIMFSPSGRVSLFSGNK 61
          R K++IK IEN T R VTFSKR++G++KKA+ELSVL    V L++ S +G V  FS  K
Sbjct: 18 RRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFSTPK 76

>pdb|1SRS|A Chain A, Serum Response Factor (Srf) Core Complexed With Specific Sre Dna Length = 92

Iteration: 1
 Score = 57.0 bits (136), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 28/60 (46%), Positives = 40/60 (66%)
Query: 2  GRVKVQIKRIENTTNRQVTFSKRRNGLVKKAYELSVLCDVDVALIMFSPSGRVSLFSGNK 61
          GRVK++++ I+N   R  TFSKR+ G++KKAYELS L    V L++ S +G V  F+  K
Sbjct: 11 GRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRK 70

>pdb|1K6O|B Chain B, Crystal Structure Of A Ternary Sap-1SRFC-Fos Sre Dna Complex Length = 103

Iteration: 1
 Score = 55.5 bits (132), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 28/60 (46%), Positives = 40/60 (66%)
Query: 2  GRVKVQIKRIENTTNRQVTFSKRRNGLVKKAYELSVLCDVDVALIMFSPSGRVSLFSGNK 61
          GRVK++++ I+N   R  TFSKR+ G++KKAYELS L    V L++ S +G V  F+  K
Sbjct: 10 GRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRK 69

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	310
3p57_A	90	Myocyte-specific enhancer factor 2A; protein-DNA c	7e-38
1hbx_A	92	SRF, serum response factor; gene regulation, trans	7e-37
1egw_A	77	MADS box transcription enhancer factor 2, polypept	3e-36
1mnm_A	100	Protein (MCM1 transcriptional regulator); transcri	2e-35
1k6o_B	103	SRF, serum response factor; protein/DNA complex, t	2e-35
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-05

>3p57_A Myocyte-specific enhancer factor 2A; protein-DNA complex, transcription factor, transcriptional activation, zinc finger; HET: DNA; 2.19A {Homo sapiens} PDB: 3kov_A* 1tqe_P 1n6j_A Length = 90

 Score =  128 bits (324), Expect = 7e-38
 Identities = 38/87 (43%), Positives = 59/87 (67%), Gaps = 2/87 (2%)

Query: 2  GRVKVQIKRIENTTNRQVTFSKRRNGLVKKAYELSVLCDVDVALIMFSPSGRVSLFSGNK 61
          GR K+QI RI +  NRQVTF+KR+ GL+KKAYELSVLCD ++ALI+F+ S ++  ++ + 
Sbjct: 1  GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYA-ST 59

Query: 62 SMEEILARYVNLPEHERGRLRNQEFLQ 88
           M+++L +Y    E       N + ++
Sbjct: 60 DMDKVLLKYTEYNEPHE-SRTNSDIVE 85

>1hbx_A SRF, serum response factor; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: d.88.1.1 PDB: 1srs_A* Length = 92

 Score =  126 bits (317), Expect = 7e-37
 Identities = 27/78 (34%), Positives = 45/78 (57%), Gaps = 1/78 (1%)

Query: 1  MGRVKVQIKRIENTTNRQVTFSKRRNGLVKKAYELSVLCDVDVALIMFSPSGRVSLFSGN 60
           GRVK++++ I+N   R  TFSKR+ G++KKAYELS L    V L++ S +G V  F+  
Sbjct: 10 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFA-T 68

Query: 61 KSMEEILARYVNLPEHER 78
          + ++ ++         + 
Sbjct: 69 RKLQPMITSETGKALIQT 86

>1egw_A MADS box transcription enhancer factor 2, polypeptide A; MADS-box transcription factor, DNA/protein complex, transcription/DNA; HET: DNA; 1.50A {Homo sapiens} SCOP: d.88.1.1 PDB: 1c7u_A 3mu6_A* Length = 77

 Score =  124 bits (312), Expect = 3e-36
 Identities = 37/74 (50%), Positives = 55/74 (74%), Gaps = 1/74 (1%)

Query: 2  GRVKVQIKRIENTTNRQVTFSKRRNGLVKKAYELSVLCDVDVALIMFSPSGRVSLFSGNK 61
          GR K+QI RI +  NRQVTF+KR+ GL+KKAYELSVLCD ++ALI+F+ S ++  ++ + 
Sbjct: 1  GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYA-ST 59

Query: 62 SMEEILARYVNLPE 75
           M+++L +Y    E
Sbjct: 60 DMDKVLLKYTEYNE 73

>1mnm_A Protein (MCM1 transcriptional regulator); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: d.88.1.1 Length = 100

 Score =  123 bits (309), Expect = 2e-35
 Identities = 33/78 (42%), Positives = 46/78 (58%), Gaps = 1/78 (1%)

Query: 1  MGRVKVQIKRIENTTNRQVTFSKRRNGLVKKAYELSVLCDVDVALIMFSPSGRVSLFSGN 60
            R K++IK IEN T R VTFSKR++G++KKA+ELSVL    V L++ S +G V  FS  
Sbjct: 16 KERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFS-T 74

Query: 61 KSMEEILARYVNLPEHER 78
             E I+ +       + 
Sbjct: 75 PKFEPIVTQQEGRNLIQA 92

>1k6o_B SRF, serum response factor; protein/DNA complex, transcription factor, combinatorial gene regulation, ETS proteins, MADS-box proteins; 3.19A {Homo sapiens} SCOP: d.88.1.1 Length = 103

 Score =  122 bits (308), Expect = 2e-35
 Identities = 27/78 (34%), Positives = 45/78 (57%), Gaps = 1/78 (1%)

Query: 1  MGRVKVQIKRIENTTNRQVTFSKRRNGLVKKAYELSVLCDVDVALIMFSPSGRVSLFSGN 60
           GRVK++++ I+N   R  TFSKR+ G++KKAYELS L    V L++ S +G V  F+  
Sbjct: 9  RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFA-T 67

Query: 61 KSMEEILARYVNLPEHER 78
          + ++ ++         + 
Sbjct: 68 RKLQPMITSETGKALIQT 85

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.1 bits (103), Expect = 5e-05
 Identities = 55/382 (14%), Positives = 109/382 (28%), Gaps = 139/382 (36%)

Query: 33  YELSVLCDVDVALIMFSPSGRVS----LFSG-NKSMEEILARYVNLPEHERGRLR-NQEF 86
              S+L   ++  I+ S    VS    LF       EE++ ++V         LR N +F
Sbjct: 41  MPKSILSKEEIDHIIMSKD-AVSGTLRLFWTLLSKQEEMVQKFVE------EVLRINYKF 93

Query: 87  LQRALGKLRSEANQT------YQATSNPTTNTDSHLEEVQQEIVKCKSQIQNMEKRLRIF 140
           L   +  +++E  Q       Y    +   N +    +     ++   +++     LR  
Sbjct: 94  L---MSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELR-- 148

Query: 141 EEDPSE------M-----TTL-------YEIKHR----------------EQILE--ETL 164
              P++      +     T +       Y+++ +                E +LE  + L
Sbjct: 149 ---PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKL 205

Query: 165 KQVRIRKHLLEEICNSSSTPATSQAHLPPAETSDHMNGFVTESPNN----ILE--WLPH- 217
              +I  +      +SS+        L        +   +   P      +L        
Sbjct: 206 -LYQIDPNWTSRSDHSSNIK------LRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKA 258

Query: 218 --------------RDSQV---------------HNLNIL---DSNGLL------PVSDE 239
                         R  QV               H+   L   +   LL         D 
Sbjct: 259 WNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDL 318

Query: 240 PQEATEILVPPL--NMFRGHNMNIDGQISRRDGLEDDNNDMQRPQFGQVIDV---NFSPW 294
           P+E       P   ++    ++     ++  D  +  N D    +   +I+       P 
Sbjct: 319 PREVLTTN--PRRLSII-AESIRDG--LATWDNWKHVNCD----KLTTIIESSLNVLEP- 368

Query: 295 TEF---------YPSGLHIESE 307
            E+         +P   HI + 
Sbjct: 369 AEYRKMFDRLSVFPPSAHIPTI 390

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.3 bits (101), Expect = 8e-05
 Identities = 43/328 (13%), Positives = 98/328 (29%), Gaps = 97/328 (29%)

Query: 10  RIENTTNRQVTFSKRRNGLVKKAYE--LSVLCDV-DVALI-MFSPSGRVSLFSGNKS--- 62
           RI +           R  L  K YE  L VL +V +      F+ S ++ L +  K    
Sbjct: 226 RIHSIQAE------LRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTD 279

Query: 63  -----------------------MEEILARYVNLPEHERGRLRNQE-----FLQRALGKL 94
                                  ++ +L +Y++    +   L  +           + + 
Sbjct: 280 FLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQD---LPREVLTTNPRRLSIIAES 336

Query: 95  RSEANQTYQATSNPTTNTDSHLEEVQQEIVKC--KSQIQNMEKRLRIFEED---PSEMTT 149
             +   T+    +   +    L  + +  +     ++ + M  RL +F      P+ + +
Sbjct: 337 IRDGLATWDNWKHVNCDK---LTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLS 393

Query: 150 LYEIKHREQILEETLKQVRIRKHLLEEICNSSSTPATSQAHLPPAETSDHMNGFVTESPN 209
           L      +  +   + ++  +  L+E+                               P+
Sbjct: 394 LIWFDVIKSDVMVVVNKLH-KYSLVEK----------------------QPKESTISIPS 430

Query: 210 NILEWLPHRDS--QVHNLNILDSNGLLPVSDEPQEATEILVPPLNM----FRGHNMNIDG 263
             LE     ++   +H  +I+D   +    D      +++ P L+       GH++    
Sbjct: 431 IYLELKVKLENEYALHR-SIVDHYNIPKTFDS----DDLIPPYLDQYFYSHIGHHLKNIE 485

Query: 264 QISRRDGLEDDNNDMQRPQFGQVIDVNF 291
                     +   + R  F   +D  F
Sbjct: 486 H--------PERMTLFRMVF---LDFRF 502

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	310
3p57_A	90	Myocyte-specific enhancer factor 2A; protein-DNA c	99.96
1egw_A	77	MADS box transcription enhancer factor 2, polypept	99.96
1mnm_A	100	Protein (MCM1 transcriptional regulator); transcri	99.95
1hbx_A	92	SRF, serum response factor; gene regulation, trans	99.95
1k6o_B	103	SRF, serum response factor; protein/DNA complex, t	99.94

>3p57_A Myocyte-specific enhancer factor 2A; protein-DNA complex, transcription factor, transcriptional activation, zinc finger; HET: DNA; 2.19A {Homo sapiens} PDB: 3kov_A* 1tqe_P 1n6j_A

Probab=99.96  E-value=4.4e-32  Score=213.05  Aligned_cols=85  Identities=46%  Similarity=0.814  Sum_probs=75.9

Q ss_pred             CccccceEEeccCCCcceeccccccchhhhhhhhhcccCcceeehhcCCCCccccccCCchhHHHHHhhcCCchhhhccc
Q 046530            2 GRVKVQIKRIENTTNRQVTFSKRRNGLVKKAYELSVLCDVDVALIMFSPSGRVSLFSGNKSMEEILARYVNLPEHERGRL   81 (310)
Q Consensus         2 gR~Ki~ik~Ien~~~R~~Tf~KRr~GL~KKa~ELs~LC~~~v~livfsp~gk~~~~~~~~sve~VI~RY~~lpe~~r~k~   81 (310)
                      ||+||+|++|+|+++|+|||+|||.||||||+||||||||+||||||||+|+++.|++ +++++||+||..+++..+.+ 
T Consensus         1 GR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valiifs~~gk~~~f~s-~~~~~il~rY~~~~~~~~~~-   78 (90)
T 3p57_A            1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYAS-TDMDKVLLKYTEYNEPHESR-   78 (90)
T ss_dssp             CCSCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEES-SCHHHHHHHHHHCCSCCCEE-
T ss_pred             CCCcceeEEecCchHHHHHHHHhhhhHHHHHHHHHhccCCceEEEEECCCCCEEEeCC-CCHHHHHHHHHhcCcccccC-
Confidence            8999999999999999999999999999999999999999999999999999999976 78999999999887655433 


Q ss_pred             ccHHHHH
Q 046530           82 RNQEFLQ   88 (310)
Q Consensus        82 ~~~e~l~   88 (310)
                      .|-+|++
T Consensus        79 ~~~d~~e   85 (90)
T 3p57_A           79 TNSDIVE   85 (90)
T ss_dssp             CHHHHHH
T ss_pred             ChHhHHH
Confidence            3444433

>1egw_A MADS box transcription enhancer factor 2, polypeptide A; MADS-box transcription factor, DNA/protein complex, transcription/DNA; HET: DNA; 1.50A {Homo sapiens} SCOP: d.88.1.1 PDB: 1c7u_A 3mu6_A*

Probab=99.96  E-value=7.8e-32  Score=206.45  Aligned_cols=73  Identities=51%  Similarity=0.875  Sum_probs=68.6

Q ss_pred             CccccceEEeccCCCcceeccccccchhhhhhhhhcccCcceeehhcCCCCccccccCCchhHHHHHhhcCCch
Q 046530            2 GRVKVQIKRIENTTNRQVTFSKRRNGLVKKAYELSVLCDVDVALIMFSPSGRVSLFSGNKSMEEILARYVNLPE   75 (310)
Q Consensus         2 gR~Ki~ik~Ien~~~R~~Tf~KRr~GL~KKa~ELs~LC~~~v~livfsp~gk~~~~~~~~sve~VI~RY~~lpe   75 (310)
                      ||+||+|++|+|+++|+|||+|||+||||||+||||||||+||||||||+|+++.|++ +++++||+||...++
T Consensus         1 GR~Ki~ik~I~n~~~R~vTfsKRr~GL~KKA~ELsvLCdaeV~livfs~~gk~~~~~s-~~~~~il~ry~~~~~   73 (77)
T 1egw_A            1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYAS-TDMDKVLLKYTEYNE   73 (77)
T ss_dssp             CCSCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCEEEEES-SCHHHHHHHHHHC--
T ss_pred             CCceeeeEEecCchHHHHHHHHhHHHHHHHHHHHhcccCCeEEEEEECCCCCEeeCCC-CCHHHHHHHHHhccC
Confidence            8999999999999999999999999999999999999999999999999999999975 689999999987653

>1mnm_A Protein (MCM1 transcriptional regulator); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: d.88.1.1

Probab=99.95  E-value=2.4e-30  Score=206.59  Aligned_cols=71  Identities=46%  Similarity=0.647  Sum_probs=67.9

Q ss_pred             CCccccceEEeccCCCcceeccccccchhhhhhhhhcccCcceeehhcCCCCccccccCCchhHHHHHhhcC
Q 046530            1 MGRVKVQIKRIENTTNRQVTFSKRRNGLVKKAYELSVLCDVDVALIMFSPSGRVSLFSGNKSMEEILARYVN   72 (310)
Q Consensus         1 MgR~Ki~ik~Ien~~~R~~Tf~KRr~GL~KKa~ELs~LC~~~v~livfsp~gk~~~~~~~~sve~VI~RY~~   72 (310)
                      |||+||+|++|+|+.+|+|||+|||.||||||+||||||||+||||||||+|++|.|++ ++++.||+||..
T Consensus        16 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~f~s-ps~~~il~r~~G   86 (100)
T 1mnm_A           16 KERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFST-PKFEPIVTQQEG   86 (100)
T ss_dssp             CCCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEEC-TTTTHHHHSHHH
T ss_pred             CCccceeeEEecCcchhhhhhhHhhhhHHHHHHHHHHhcCCcEEEEEecCCCCcceecC-CCHHHHHHHhhC
Confidence            89999999999999999999999999999999999999999999999999999999964 689999999854

>1hbx_A SRF, serum response factor; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: d.88.1.1 PDB: 1srs_A*

Probab=99.95  E-value=3.6e-30  Score=202.96  Aligned_cols=70  Identities=39%  Similarity=0.647  Sum_probs=67.1

Q ss_pred             CCccccceEEeccCCCcceeccccccchhhhhhhhhcccCcceeehhcCCCCccccccCCchhHHHHHhhc
Q 046530            1 MGRVKVQIKRIENTTNRQVTFSKRRNGLVKKAYELSVLCDVDVALIMFSPSGRVSLFSGNKSMEEILARYV   71 (310)
Q Consensus         1 MgR~Ki~ik~Ien~~~R~~Tf~KRr~GL~KKa~ELs~LC~~~v~livfsp~gk~~~~~~~~sve~VI~RY~   71 (310)
                      |||+||+|++|+|+.+|+|||+|||.||||||+||||||||+||||||||+|++|.|+ ++++..||++|.
T Consensus        10 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~V~livfs~~gk~~~f~-s~~~~~~i~~~~   79 (92)
T 1hbx_A           10 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFA-TRKLQPMITSET   79 (92)
T ss_dssp             CCSCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECTTSCEEEEE-CGGGGGGTSSHH
T ss_pred             CCcceEEEEEecChhHHHHHHHHhhhhHHHHHHHHHhhcCCceEEEEECCCCCEEEec-CCCHHHHHhhhc
Confidence            9999999999999999999999999999999999999999999999999999999995 478999999774

>1k6o_B SRF, serum response factor; protein/DNA complex, transcription factor, combinatorial gene regulation, ETS proteins, MADS-box proteins; 3.19A {Homo sapiens} SCOP: d.88.1.1

Probab=99.94  E-value=1.1e-29  Score=203.79  Aligned_cols=70  Identities=39%  Similarity=0.647  Sum_probs=66.7

Q ss_pred             CCccccceEEeccCCCcceeccccccchhhhhhhhhcccCcceeehhcCCCCccccccCCchhHHHHHhhc
Q 046530            1 MGRVKVQIKRIENTTNRQVTFSKRRNGLVKKAYELSVLCDVDVALIMFSPSGRVSLFSGNKSMEEILARYV   71 (310)
Q Consensus         1 MgR~Ki~ik~Ien~~~R~~Tf~KRr~GL~KKa~ELs~LC~~~v~livfsp~gk~~~~~~~~sve~VI~RY~   71 (310)
                      |||+||+|++|+|+.+|+|||+|||.||||||+||||||||+||||||||+|++|.|+ ++++..||+++.
T Consensus         9 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~f~-s~~~~~vi~~~~   78 (103)
T 1k6o_B            9 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFA-TRKLQPMITSET   78 (103)
T ss_dssp             CCSCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSCEEEEE-CGGGGGGTSSHH
T ss_pred             CCcceeEEEEecCchHHHHhHhHhhHhHHHHHHHHHhhhCCceEEEEEeCCCCeeeec-CccHHHHHHhhh
Confidence            9999999999999999999999999999999999999999999999999999999995 578999998653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	310
d1egwa_	71	d.88.1.1 (A:) Myocyte enhancer factor Mef2a core {	2e-33
d1srsa_	84	d.88.1.1 (A:) Serum response factor (SRF) core {Hu	4e-32
d1mnma_	85	d.88.1.1 (A:) MCM1 transcriptional regulator {Bake	9e-32

>d1egwa_ d.88.1.1 (A:) Myocyte enhancer factor Mef2a core {Human (Homo sapiens) [TaxId: 9606]} Length = 71

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: Myocyte enhancer factor Mef2a core
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  115 bits (289), Expect = 2e-33
 Identities = 36/69 (52%), Positives = 54/69 (78%), Gaps = 1/69 (1%)

Query: 2  GRVKVQIKRIENTTNRQVTFSKRRNGLVKKAYELSVLCDVDVALIMFSPSGRVSLFSGNK 61
          GR K+QI RI +  NRQVTF+KR+ GL+KKAYELSVLCD ++ALI+F+ S ++  ++ + 
Sbjct: 1  GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYA-ST 59

Query: 62 SMEEILARY 70
           M+++L +Y
Sbjct: 60 DMDKVLLKY 68

>d1srsa_ d.88.1.1 (A:) Serum response factor (SRF) core {Human (Homo sapiens) [TaxId: 9606]} Length = 84

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: Serum response factor (SRF) core
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  112 bits (282), Expect = 4e-32
 Identities = 27/70 (38%), Positives = 44/70 (62%), Gaps = 1/70 (1%)

Query: 1  MGRVKVQIKRIENTTNRQVTFSKRRNGLVKKAYELSVLCDVDVALIMFSPSGRVSLFSGN 60
           GRVK++++ I+N   R  TFSKR+ G++KKAYELS L    V L++ S +G V  F+  
Sbjct: 2  RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFA-T 60

Query: 61 KSMEEILARY 70
          + ++ ++   
Sbjct: 61 RKLQPMITSE 70

>d1mnma_ d.88.1.1 (A:) MCM1 transcriptional regulator {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 85

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: MCM1 transcriptional regulator
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  111 bits (280), Expect = 9e-32
 Identities = 33/77 (42%), Positives = 46/77 (59%), Gaps = 1/77 (1%)

Query: 2  GRVKVQIKRIENTTNRQVTFSKRRNGLVKKAYELSVLCDVDVALIMFSPSGRVSLFSGNK 61
           R K++IK IEN T R VTFSKR++G++KKA+ELSVL    V L++ S +G V  FS   
Sbjct: 3  ERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFS-TP 61

Query: 62 SMEEILARYVNLPEHER 78
            E I+ +       + 
Sbjct: 62 KFEPIVTQQEGRNLIQA 78

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	310
d1egwa_	71	Myocyte enhancer factor Mef2a core {Human (Homo sa	99.96
d1srsa_	84	Serum response factor (SRF) core {Human (Homo sapi	99.95
d1mnma_	85	MCM1 transcriptional regulator {Baker's yeast (Sac	99.95

>d1egwa_ d.88.1.1 (A:) Myocyte enhancer factor Mef2a core {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: Myocyte enhancer factor Mef2a core
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=4.1e-32  Score=202.98  Aligned_cols=70  Identities=51%  Similarity=0.899  Sum_probs=67.6

Q ss_pred             CccccceEEeccCCCcceeccccccchhhhhhhhhcccCcceeehhcCCCCccccccCCchhHHHHHhhcC
Q 046530            2 GRVKVQIKRIENTTNRQVTFSKRRNGLVKKAYELSVLCDVDVALIMFSPSGRVSLFSGNKSMEEILARYVN   72 (310)
Q Consensus         2 gR~Ki~ik~Ien~~~R~~Tf~KRr~GL~KKa~ELs~LC~~~v~livfsp~gk~~~~~~~~sve~VI~RY~~   72 (310)
                      ||+||+|++|+|+..|+|||+|||.||||||+|||+||||+||||||||+|++++|++ +++++||+||..
T Consensus         1 GR~Ki~ik~Ie~~~~R~vTFsKRk~GL~KKa~ELs~LC~~~valiv~s~~gk~~~f~s-~~~~~vl~ry~~   70 (71)
T d1egwa_           1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYAS-TDMDKVLLKYTE   70 (71)
T ss_dssp             CCSCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCEEEEES-SCHHHHHHHHHH
T ss_pred             CCccceEEeccCCchheeehhHhhhhHHHHHHHHhhccCCcEEEEEEcCCCCEEEeeC-CCHHHHHHHHhc
Confidence            8999999999999999999999999999999999999999999999999999999975 789999999964

>d1srsa_ d.88.1.1 (A:) Serum response factor (SRF) core {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: Serum response factor (SRF) core
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=1.8e-30  Score=199.15  Aligned_cols=71  Identities=38%  Similarity=0.640  Sum_probs=68.3

Q ss_pred             CCccccceEEeccCCCcceeccccccchhhhhhhhhcccCcceeehhcCCCCccccccCCchhHHHHHhhcC
Q 046530            1 MGRVKVQIKRIENTTNRQVTFSKRRNGLVKKAYELSVLCDVDVALIMFSPSGRVSLFSGNKSMEEILARYVN   72 (310)
Q Consensus         1 MgR~Ki~ik~Ien~~~R~~Tf~KRr~GL~KKa~ELs~LC~~~v~livfsp~gk~~~~~~~~sve~VI~RY~~   72 (310)
                      +||+||+|++|+|+..|+|||+|||.||||||+||||||||+||||||||+|++|.|+ +++++.||++|..
T Consensus         2 ~GR~Ki~i~~Ie~~~~R~vTFsKRr~GL~KKa~ELs~Lc~~~v~liv~s~~gk~~~f~-s~~~~~vi~~~~~   72 (84)
T d1srsa_           2 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFA-TRKLQPMITSETG   72 (84)
T ss_dssp             CCCCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECTTCCEEEEE-CGGGHHHHSSHHH
T ss_pred             CCCceeeEEeecCcchhhhhhHHhhhhHHHHHHHHhcccCCcEEEEEEcCCCCEEEee-CCCHHHHHHHHHH
Confidence            6999999999999999999999999999999999999999999999999999999995 5899999999964

>d1mnma_ d.88.1.1 (A:) MCM1 transcriptional regulator {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: MCM1 transcriptional regulator
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=2.4e-30  Score=199.48  Aligned_cols=72  Identities=46%  Similarity=0.637  Sum_probs=68.6

Q ss_pred             CccccceEEeccCCCcceeccccccchhhhhhhhhcccCcceeehhcCCCCccccccCCchhHHHHHhhcCCc
Q 046530            2 GRVKVQIKRIENTTNRQVTFSKRRNGLVKKAYELSVLCDVDVALIMFSPSGRVSLFSGNKSMEEILARYVNLP   74 (310)
Q Consensus         2 gR~Ki~ik~Ien~~~R~~Tf~KRr~GL~KKa~ELs~LC~~~v~livfsp~gk~~~~~~~~sve~VI~RY~~lp   74 (310)
                      ||+||+|++|+|+..|+|||+|||.||||||+||||||||+||||||||+|++|.|+ +|+++.||+||...+
T Consensus         3 ~R~Ki~i~~I~~~~~R~vTFsKRr~GL~KKa~ELsvLc~a~vaviv~s~~gk~~~f~-sp~v~~vl~r~~~~~   74 (85)
T d1mnma_           3 ERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFS-TPKFEPIVTQQEGRN   74 (85)
T ss_dssp             CCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEE-CTTTTHHHHSHHHHH
T ss_pred             CccceEEEEecCCchhhhhhHHHHhhHHHHHHHHhccCCCcEEEEEEcCCCCEEecc-CCCHHHHHHHHhccc
Confidence            899999999999999999999999999999999999999999999999999999994 589999999997643