Citrus Sinensis ID: 046564

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160
FSGLLIKIPLISTLAFRSDDYFINLKSIKVDGKVVSFDTSLLSIDSGAVGGAKISTFTPYAVLHSAIYNALAKDFAKRAFDKKMIGLAPLAPFGARFNTKNVATTKNAGPAVPTMDLELRGIGNSSSNTYWRICGANSMARIKRNVMCLGFLDGGPNPVT
cccccEEccccccccccccccEEEEEEEEEccEEEEEccccccccccccccEEEEccccEEEEcHHHHHHHHHHHHHHHHcccccccccccccccEEccccccccccccccccEEEEEEccccccccccEEEEEccccEEEEcccEEEEEEEcccccccc
cccEEEEcccccccccccccEEEEEEEEEEccEEEcccccHEEEccccccEEEEEccccEEEccHHHHHHHHHHHHHHHHcccccccccccccccEEccccccccccccccccEEEEEEEccccccccEEEEEEcccEEEEEcccEEEEEEEEccccccc
fsgllikiplistlafrsddyFINLKsikvdgkvvsfdtsllsidsgavggakistftPYAVLHSAIYNALAKDFAKRAFDkkmiglaplapfgarfntknvattknagpavptmdlelrgignsssntYWRICGANSMARIKRNVMCLgfldggpnpvt
fsgllikiplistlafrsdDYFINLKSIKVDGKVVSFDTSLLSIDSGAVGGAKISTFTPYAVLHSAIYNALAKDFAKRAFDKKMIGLAPLAPFGARFNTKnvattknagpavptmdLELRGIGNSSSNTYWRICGANSMARIKRNVMCLgfldggpnpvt
FSGLLIKIPLISTLAFRSDDYFINLKSIKVDGKVVSFDTSLLSIDSGAVGGAKISTFTPYAVLHSAIYNalakdfakrafdkkMIGLAPLAPFGARFNTKNVATTKNAGPAVPTMDLELRGIGNSSSNTYWRICGANSMARIKRNVMCLGFLDGGPNPVT
***LLIKIPLISTLAFRSDDYFINLKSIKVDGKVVSFDTSLLSIDSGAVGGAKISTFTPYAVLHSAIYNALAKDFAKRAFDKKMIGLAPLAPFGARFNTKNVATTKNAGPAVPTMDLELRGIGNSSSNTYWRICGANSMARIKRNVMCLGFLD*******
*SGLLIKIPLISTLAFRSDDYFINLKSIKVDGKVVSFDTSLLSIDSGAVGGAKISTFTPYAVLHSAIYNALAKDFAKRAFDKK***LAPLAPFGARFNTKNVATTKNAGPAVPTMDLELRGIGNSSSNTYWRICGANSMARIKRNVMCLGFL*GG*****
FSGLLIKIPLISTLAFRSDDYFINLKSIKVDGKVVSFDTSLLSIDSGAVGGAKISTFTPYAVLHSAIYNALAKDFAKRAFDKKMIGLAPLAPFGARFNTKNVATTKNAGPAVPTMDLELRGIGNSSSNTYWRICGANSMARIKRNVMCLGFLDGGPNPVT
FSGLLIKIPLISTLAFRSDDYFINLKSIKVDGKVVSFDTSLLSIDSGAVGGAKISTFTPYAVLHSAIYNALAKDFAKRAFDKKMIGLAPLAPFGARFNTKNVATTKNAGPAVPTMDLELRGIGNSSSNTYWRICGANSMARIKRNVMCLGFLDGG*****
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FSGLLIKIPLISTLAFRSDDYFINLKSIKVDGKVVSFDTSLLSIDSGAVGGAKISTFTPYAVLHSAIYNALAKDFAKRAFDKKMIGLAPLAPFGARFNTKNVATTKNAGPAVPTMDLELRGIGNSSSNTYWRICGANSMARIKRNVMCLGFLDGGPNPVT
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query160 2.2.26 [Sep-21-2011]
Q8RVH5433 Basic 7S globulin 2 OS=Gl no no 0.787 0.290 0.302 4e-12
P13917427 Basic 7S globulin OS=Glyc no no 0.837 0.313 0.304 1e-10
>sp|Q8RVH5|7SBG2_SOYBN Basic 7S globulin 2 OS=Glycine max PE=1 SV=1 Back     alignment and function desciption
 Score = 70.5 bits (171), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 42/139 (30%), Positives = 71/139 (51%), Gaps = 13/139 (9%)

Query: 20  DYFINLKSIKVDGKVVSFDTSLLSIDSGAVGGAKISTFTPYAVLHSAIYNALAKDFAKRA 79
           +Y + + SI+++   V     + S   G+ GG  IST TP+ VL  ++Y A  + FA++ 
Sbjct: 260 EYNVRVSSIRINQHSVFPPNKISSTIVGSSGGTMISTSTPHMVLQQSLYQAFTQVFAQQL 319

Query: 80  FDKKMIGLAPLAPFGARFNTKNVATTKNAGPAVPTMDLELRGIGNSSSNTYWRICGANSM 139
             +K   +  +APFG  FN+  +        A P++DL    + +  +   WRI G + M
Sbjct: 320 --EKQAQVKSVAPFGLCFNSNKIN-------AYPSVDL----VMDKPNGPVWRISGEDLM 366

Query: 140 ARIKRNVMCLGFLDGGPNP 158
            + +  V CLG ++GG  P
Sbjct: 367 VQAQPGVTCLGVMNGGMQP 385
Seed storage protein. Has a protein kinase activity. Binds leginsulin.
Glycine max (taxid: 3847)
>sp|P13917|7SB1_SOYBN Basic 7S globulin OS=Glycine max GN=BG PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query160
255552241 434 basic 7S globulin 2 precursor small subu 0.843 0.311 0.510 8e-32
343161843 440 extracellular dermal glycoprotein [Nicot 0.843 0.306 0.489 3e-31
359806276 450 uncharacterized protein LOC100818868 pre 0.837 0.297 0.489 5e-31
224090425 416 predicted protein [Populus trichocarpa] 0.856 0.329 0.496 6e-31
222822566 436 xyloglucanase-specific endoglucanase inh 0.837 0.307 0.482 4e-30
62362434 437 nectarin IV [Nicotiana langsdorffii x Ni 0.843 0.308 0.475 5e-30
225432542 435 PREDICTED: basic 7S globulin-like [Vitis 0.843 0.310 0.475 2e-29
225436984 436 PREDICTED: basic 7S globulin [Vitis vini 0.856 0.314 0.475 3e-29
222822564 437 xyloglucan-specific endoglucanase inhibi 0.943 0.345 0.451 3e-29
388493426 454 unknown [Medicago truncatula] 0.856 0.301 0.472 6e-29
>gi|255552241|ref|XP_002517165.1| basic 7S globulin 2 precursor small subunit, putative [Ricinus communis] gi|223543800|gb|EEF45328.1| basic 7S globulin 2 precursor small subunit, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  141 bits (356), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 73/143 (51%), Positives = 97/143 (67%), Gaps = 8/143 (5%)

Query: 18  SDDYFINLKSIKVDGKVVSFDTSLLSIDSGAVGGAKISTFTPYAVLHSAIYNALAKDFAK 77
           S +YFI +KSIK++GK V  +TSLL ID   VGG KIST  PY VL + IY A+ K F K
Sbjct: 255 SSEYFIGVKSIKINGKAVPLNTSLLFIDKEGVGGTKISTVDPYTVLETTIYQAVTKVFIK 314

Query: 78  RAFDKKMIGLAPLAPFGARFNTKNVATTKNAGPAVPTMDLELRGIGNSSSNTYWRICGAN 137
              +   +  AP++PFG  FN+ N+ +T+  GPAVP +DL L+     SS+ +WRI GAN
Sbjct: 315 ELAEVPRV--APVSPFGVCFNSSNIGSTR-VGPAVPQIDLVLQ-----SSSVFWRIFGAN 366

Query: 138 SMARIKRNVMCLGFLDGGPNPVT 160
           SM ++K +V+CLGF+DGG NP T
Sbjct: 367 SMVQVKSDVLCLGFVDGGLNPRT 389

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|343161843|dbj|BAK57511.1| extracellular dermal glycoprotein [Nicotiana benthamiana] Back     alignment and taxonomy information
>gi|359806276|ref|NP_001241217.1| uncharacterized protein LOC100818868 precursor [Glycine max] gi|255644718|gb|ACU22861.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|224090425|ref|XP_002308984.1| predicted protein [Populus trichocarpa] gi|222854960|gb|EEE92507.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|222822566|gb|ACM68432.1| xyloglucanase-specific endoglucanase inhibitor protein [Petunia x hybrida] Back     alignment and taxonomy information
>gi|62362434|gb|AAX81588.1| nectarin IV [Nicotiana langsdorffii x Nicotiana sanderae] Back     alignment and taxonomy information
>gi|225432542|ref|XP_002277699.1| PREDICTED: basic 7S globulin-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|225436984|ref|XP_002272235.1| PREDICTED: basic 7S globulin [Vitis vinifera] Back     alignment and taxonomy information
>gi|222822564|gb|ACM68431.1| xyloglucan-specific endoglucanase inhibitor protein [Capsicum annuum] Back     alignment and taxonomy information
>gi|388493426|gb|AFK34779.1| unknown [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query160
TAIR|locus:2014475433 AT1G03220 [Arabidopsis thalian 0.937 0.346 0.407 8e-23
TAIR|locus:2014465434 AT1G03230 [Arabidopsis thalian 0.85 0.313 0.419 8.1e-23
TAIR|locus:2182182405 AT5G19110 [Arabidopsis thalian 0.818 0.323 0.352 2.5e-16
TAIR|locus:2179614391 AT5G19100 [Arabidopsis thalian 0.575 0.235 0.372 3.3e-11
TAIR|locus:2166061406 AT5G48430 [Arabidopsis thalian 0.762 0.300 0.291 1.2e-09
TAIR|locus:2182187386 AT5G19120 [Arabidopsis thalian 0.568 0.235 0.317 1.5e-05
TAIR|locus:2014475 AT1G03220 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 267 (99.0 bits), Expect = 8.0e-23, P = 8.0e-23
 Identities = 66/162 (40%), Positives = 92/162 (56%)

Query:     4 LLIKIPLISTLAF----RSDDYFINLKSIKVDGKVVSFDTSLLSID-SGAVGGAKISTFT 58
             LLI  P+ +  AF    +S +YFI + +I++  K V  + +LL I+ S  +GG KIS+  
Sbjct:   234 LLIN-PVSTASAFSQGEKSSEYFIGVTAIQIVEKTVPINPTLLKINASTGIGGTKISSVN 292

Query:    59 PYAVLHSAIYNXXXXXXXXXXXXXXMIGLAPLAPFGARFNTKNVATTKNAGPAVPTMDLE 118
             PY VL S+IYN              +  +A + PFGA F+TKNV  T+  G AVP ++L 
Sbjct:   293 PYTVLESSIYNAFTSEFVKQAAARSIKRVASVKPFGACFSTKNVGVTR-LGYAVPEIELV 351

Query:   119 LRGIGNSSSNTYWRICGANSMARIKRNVMCLGFLDGGPNPVT 160
             L      S +  WRI GANSM  +  +V+CLGF+DGG N  T
Sbjct:   352 LH-----SKDVVWRIFGANSMVSVSDDVICLGFVDGGVNART 388
GO:0004190 "aspartic-type endopeptidase activity" evidence=IEA
GO:0005576 "extracellular region" evidence=ISM
GO:0006508 "proteolysis" evidence=IEA
GO:0005618 "cell wall" evidence=IDA
GO:0005886 "plasma membrane" evidence=IDA
GO:0016020 "membrane" evidence=IDA
GO:0009505 "plant-type cell wall" evidence=IDA
GO:0009651 "response to salt stress" evidence=IEP
GO:0005829 "cytosol" evidence=RCA
GO:0009506 "plasmodesma" evidence=IDA
GO:0005794 "Golgi apparatus" evidence=IDA
TAIR|locus:2014465 AT1G03230 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2182182 AT5G19110 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2179614 AT5G19100 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2166061 AT5G48430 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2182187 AT5G19120 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query160
cd05489362 cd05489, xylanase_inhibitor_I_like, TAXI-I inhibit 3e-38
cd05476265 cd05476, pepsin_A_like_plant, Chroloplast Nucleoid 3e-04
>gnl|CDD|133156 cd05489, xylanase_inhibitor_I_like, TAXI-I inhibits degradation of xylan in the cell wall Back     alignment and domain information 
 Score =  133 bits (336), Expect = 3e-38
 Identities = 57/164 (34%), Positives = 78/164 (47%), Gaps = 16/164 (9%)

Query: 1   FSGLLIKIPLISTLAFRSDDYFINLKSIKVDGKVVSFDTSLLSIDSGAVGGAKISTFTPY 60
            S  L   PL++    +S +Y+I + SI V+G  V  + +L + D    GG K+ST  PY
Sbjct: 182 LSKSLSYTPLLTNPR-KSGEYYIGVTSIAVNGHAVPLNPTLSANDRLGPGGVKLSTVVPY 240

Query: 61  AVLHSAIYNALAKDFAKRAFDKKMIGL----APLAPFGARFNTKNVATTKNAGPAVPTMD 116
            VL S IY A  +     AF K    +    A        +    +  T+  G AVP +D
Sbjct: 241 TVLRSDIYRAFTQ-----AFAKATARIPRVPAAAVFPELCYPASALGNTR-LGYAVPAID 294

Query: 117 LELRGIGNSSSNTYWRICGANSMARIKRNVMCLGFLDGGPNPVT 160
           L L G G +     W I GANSM ++K  V CL F+DGG  P  
Sbjct: 295 LVLDGGGVN-----WTIFGANSMVQVKGGVACLAFVDGGSEPRP 333

Xylanase inhibitor-I (TAXI-I) is a member of potent TAXI-type inhibitors of fungal and bacterial family 11 xylanases. Plants developed a diverse battery of defense mechanisms in response to continual challenges by a broad spectrum of pathogenic microorganisms. Their defense arsenal includes inhibitors of cell wall-degrading enzymes, which hinder a possible invasion and colonization by antagonists. Xylanases of fungal and bacterial pathogens are the key enzymes in the degradation of xylan in the cell wall. Plants secrete proteins that inhibit these degradation glycosidases, including xylanase. Surprisingly, TAXI-I displays structural homology with the pepsin-like family of aspartic proteases but is proteolytically nonfunctional, because one or more residues of the essential catalytic triad are absent. The structure of the TAXI-inhibitor, Aspergillus niger xylanase I complex, illustrates the ability of tight binding and inhibition with subnanomolar affinity and indicates the importance of the C-terminal end for the differences in xylanase specificity among different TAXI-type inhibitors. This family also contains pepsin-like aspartic proteinases homologous to TAXI-I. Unlike TAXI-I, they have active site aspartates and are functionally active. This family of aspartate proteases is classified by MEROPS as the peptidase family A1 (pepsin A, clan AA). Length = 362
>gnl|CDD|133143 cd05476, pepsin_A_like_plant, Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 160
PF14541161 TAXi_C: Xylanase inhibitor C-terminal; PDB: 3AUP_D 100.0
cd05489362 xylanase_inhibitor_I_like TAXI-I inhibits degradat 99.97
PLN03146431 aspartyl protease family protein; Provisional 99.94
cd05472299 cnd41_like Chloroplast Nucleoids DNA-binding Prote 99.87
KOG1339398 consensus Aspartyl protease [Posttranslational mod 99.83
cd05476265 pepsin_A_like_plant Chroloplast Nucleoids DNA-bind 99.61
cd05473364 beta_secretase_like Beta-secretase, aspartic-acid 99.59
cd05475273 nucellin_like Nucellins, plant aspartic proteases 99.58
cd05474295 SAP_like SAPs, pepsin-like proteinases secreted fr 99.5
cd05477318 gastricsin Gastricsins, asparate proteases produce 99.41
cd05478317 pepsin_A Pepsin A, aspartic protease produced in g 99.37
cd05488320 Proteinase_A_fungi Fungal Proteinase A , aspartic 99.36
cd06096326 Plasmepsin_5 Plasmepsins are a class of aspartic p 99.36
cd05486316 Cathespin_E Cathepsin E, non-lysosomal aspartic pr 99.35
cd05490325 Cathepsin_D2 Cathepsin_D2, pepsin family of protei 99.29
cd05485329 Cathepsin_D_like Cathepsin_D_like, pepsin family o 99.24
cd05487326 renin_like Renin stimulates production of angioten 99.2
cd06098317 phytepsin Phytepsin, a plant homolog of mammalian 99.17
PTZ00165482 aspartyl protease; Provisional 99.09
cd05471283 pepsin_like Pepsin-like aspartic proteases, biloba 98.97
PTZ00147453 plasmepsin-1; Provisional 98.74
PTZ00013450 plasmepsin 4 (PM4); Provisional 98.66
cd06097278 Aspergillopepsin_like Aspergillopepsin_like, aspar 98.36
PF00026317 Asp: Eukaryotic aspartyl protease The Prosite entr 98.33
PF1365090 Asp_protease_2: Aspartyl protease 91.07
cd0548491 retropepsin_like_LTR_2 Retropepsins_like_LTR, peps 89.1
cd0548396 retropepsin_like_bacteria Bacterial aspartate prot 85.26
TIGR02281121 clan_AA_DTGA clan AA aspartic protease, TIGR02281 83.02
>PF14541 TAXi_C: Xylanase inhibitor C-terminal; PDB: 3AUP_D 3HD8_A 1T6G_A 1T6E_X 2B42_A 3VLB_A 3VLA_A Back     alignment and domain information 
Probab=100.00  E-value=1.2e-33  Score=216.02  Aligned_cols=127  Identities=24%  Similarity=0.448  Sum_probs=100.5

Q ss_pred             ceEEEeEEEEECCEEeeecCcccccccCCCCceEEeccccceeechHHHHHHHHHHHHHhcccCccc-CCCCCCCccccc
Q 046564           20 DYFINLKSIKVDGKVVSFDTSLLSIDSGAVGGAKISTFTPYAVLHSAIYNALAKDFAKRAFDKKMIG-LAPLAPFGARFN   98 (160)
Q Consensus        20 ~YyV~l~gIsVgg~~l~i~~~~~~~~~~G~GG~iiDSGt~~T~L~~~~Y~~l~~a~~~~~~~~~~~~-~~~~~~fdlCy~   98 (160)
                      +|||+|+||+|||++|+++++.|++ ++|.||+||||||++|+|++++|++|++||.+++...++++ .+...++++||+
T Consensus         1 ~Y~v~l~~Isvg~~~l~~~~~~~~~-~~~~g~~iiDSGT~~T~L~~~~y~~l~~al~~~~~~~~~~~~~~~~~~~~~Cy~   79 (161)
T PF14541_consen    1 FYYVNLTGISVGGKRLPIPPSVFQL-SDGSGGTIIDSGTTYTYLPPPVYDALVQALDAQMGAPGVSREAPPFSGFDLCYN   79 (161)
T ss_dssp             SEEEEEEEEEETTEEE---TTCSCE-TTSTCSEEE-SSSSSEEEEHHHHHHHHHHHHHHHHTCT--CEE---TT-S-EEE
T ss_pred             CccEEEEEEEECCEEecCChHHhhc-cCCCCCEEEECCCCccCCcHHHHHHHHHHHHHHhhhcccccccccCCCCCceee
Confidence            5999999999999999999999998 88999999999999999999999999999999998544444 345688999999


Q ss_pred             ccCCCccCCCCCCcCeEEEEEcCCCCCCCceEEEEecCceEEEeCCCeEEEEEEeC
Q 046564           99 TKNVATTKNAGPAVPTMDLELRGIGNSSSNTYWRICGANSMARIKRNVMCLGFLDG  154 (160)
Q Consensus        99 ~s~~~~~~~~~~~vP~v~l~F~g~~~~~~g~~~~l~~~n~~~~~~~~~~CLa~~~~  154 (160)
                      .+....... ...+|+|+|||+|      |++|+|+++|||+..+++++||||.++
T Consensus        80 ~~~~~~~~~-~~~~P~i~l~F~~------ga~l~l~~~~y~~~~~~~~~Cla~~~~  128 (161)
T PF14541_consen   80 LSSFGVNRD-WAKFPTITLHFEG------GADLTLPPENYFVQVSPGVFCLAFVPS  128 (161)
T ss_dssp             GGCS-EETT-EESS--EEEEETT------SEEEEE-HHHHEEEECTTEEEESEEEE
T ss_pred             ccccccccc-cccCCeEEEEEeC------CcceeeeccceeeeccCCCEEEEEEcc
Confidence            987311111 3579999999998      699999999999999999999999988

>cd05489 xylanase_inhibitor_I_like TAXI-I inhibits degradation of xylan in the cell wall Back     alignment and domain information
>PLN03146 aspartyl protease family protein; Provisional Back     alignment and domain information
>cd05472 cnd41_like Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase Back     alignment and domain information
>KOG1339 consensus Aspartyl protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd05476 pepsin_A_like_plant Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants Back     alignment and domain information
>cd05473 beta_secretase_like Beta-secretase, aspartic-acid protease important in the pathogenesis of Alzheimer's disease Back     alignment and domain information
>cd05475 nucellin_like Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation Back     alignment and domain information
>cd05474 SAP_like SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins Back     alignment and domain information
>cd05477 gastricsin Gastricsins, asparate proteases produced in gastric mucosa Back     alignment and domain information
>cd05478 pepsin_A Pepsin A, aspartic protease produced in gastric mucosa of mammals Back     alignment and domain information
>cd05488 Proteinase_A_fungi Fungal Proteinase A , aspartic proteinase superfamily Back     alignment and domain information
>cd06096 Plasmepsin_5 Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite Back     alignment and domain information
>cd05486 Cathespin_E Cathepsin E, non-lysosomal aspartic protease Back     alignment and domain information
>cd05490 Cathepsin_D2 Cathepsin_D2, pepsin family of proteinases Back     alignment and domain information
>cd05485 Cathepsin_D_like Cathepsin_D_like, pepsin family of proteinases Back     alignment and domain information
>cd05487 renin_like Renin stimulates production of angiotensin and thus affects blood pressure Back     alignment and domain information
>cd06098 phytepsin Phytepsin, a plant homolog of mammalian lysosomal pepsins Back     alignment and domain information
>PTZ00165 aspartyl protease; Provisional Back     alignment and domain information
>cd05471 pepsin_like Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH Back     alignment and domain information
>PTZ00147 plasmepsin-1; Provisional Back     alignment and domain information
>PTZ00013 plasmepsin 4 (PM4); Provisional Back     alignment and domain information
>cd06097 Aspergillopepsin_like Aspergillopepsin_like, aspartic proteases of fungal origin Back     alignment and domain information
>PF00026 Asp: Eukaryotic aspartyl protease The Prosite entry also includes Pfam:PF00077 Back     alignment and domain information
>PF13650 Asp_protease_2: Aspartyl protease Back     alignment and domain information
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases Back     alignment and domain information
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family Back     alignment and domain information
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query160
3vla_A413 Crystal Structure Of Edgp Length = 413 6e-28
3vlb_A413 Crystal Structure Of Xeg-Edgp Length = 413 6e-28
3aup_A403 Crystal Structure Of Basic 7s Globulin From Soybean 4e-08
3hd8_A389 Crystal Structure Of The Triticum Aestivum Xylanase 3e-06
1t6e_X381 Crystal Structure Of The Triticum Aestivum Xylanase 2e-05
>pdb|3VLA|A Chain A, Crystal Structure Of Edgp Length = 413 Back     alignment and structure 
Iteration: 1

 Score =  119 bits (299), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 65/146 (44%), Positives = 90/146 (61%), Gaps = 6/146 (4%)
Query: 12  STLAFRSDDYFINLKSIKVDGKVVSFDTSLLSIDSGAVGGAKISTFTPYAVLHSAIYNXX 71
           ST    S +YFI +KSIK++ K+V+ +TSLLSI S  +GG KIST  PY VL ++IY   
Sbjct: 228 STQGEPSVEYFIGVKSIKINSKIVALNTSLLSISSAGLGGTKISTINPYTVLETSIYKAV 287
Query: 72  XXXXXXXXXXXXMIGLAPLAPFGARFNTKNVATTKNAGPAVPTMDLELRGIGNSSSNTYW 131
                       +  +A +APFGA F+T N+ +T+  GP+VP++DL L+     S +  W
Sbjct: 288 TEAFIKESAARNITRVASVAPFGACFSTDNILSTR-LGPSVPSIDLVLQ-----SESVVW 341
Query: 132 RICGANSMARIKRNVMCLGFLDGGPN 157
            I G+NSM  I  NV+CLG +DGG N
Sbjct: 342 TITGSNSMVYINDNVVCLGVVDGGSN 367
>pdb|3VLB|A Chain A, Crystal Structure Of Xeg-Edgp Length = 413 Back     alignment and structure
>pdb|3AUP|A Chain A, Crystal Structure Of Basic 7s Globulin From Soybean Length = 403 Back     alignment and structure
>pdb|3HD8|A Chain A, Crystal Structure Of The Triticum Aestivum Xylanase Inhibitor-Iia In Complex With Bacillus Subtilis Xylanase Length = 389 Back     alignment and structure
>pdb|1T6E|X Chain X, Crystal Structure Of The Triticum Aestivum Xylanase Inhibitor I Length = 381 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query160
3vla_A413 EDGP; extracellular, inhibitor, plant protein; HET 5e-21
1t6e_X381 Xylanase inhibitor; two beta-barrel domain structu 2e-15
3aup_A403 SBG7S, BG, basic 7S globulin; pepsin-like fold, pl 2e-14
>3vla_A EDGP; extracellular, inhibitor, plant protein; HET: NAG; 0.95A {Daucus carota} PDB: 3vlb_A Length = 413 Back     alignment and structure
 Score = 87.2 bits (215), Expect = 5e-21
 Identities = 66/144 (45%), Positives = 95/144 (65%), Gaps = 6/144 (4%)

Query: 17  RSDDYFINLKSIKVDGKVVSFDTSLLSIDSGAVGGAKISTFTPYAVLHSAIYNALAKDFA 76
            S +YFI +KSIK++ K+V+ +TSLLSI S  +GG KIST  PY VL ++IY A+ + F 
Sbjct: 233 PSVEYFIGVKSIKINSKIVALNTSLLSISSAGLGGTKISTINPYTVLETSIYKAVTEAFI 292

Query: 77  KRAFDKKMIGLAPLAPFGARFNTKNVATTKNAGPAVPTMDLELRGIGNSSSNTYWRICGA 136
           K +  + +  +A +APFGA F+T N+ +T+  GP+VP++DL L+       +  W I G+
Sbjct: 293 KESAARNITRVASVAPFGACFSTDNILSTR-LGPSVPSIDLVLQS-----ESVVWTITGS 346

Query: 137 NSMARIKRNVMCLGFLDGGPNPVT 160
           NSM  I  NV+CLG +DGG N  T
Sbjct: 347 NSMVYINDNVVCLGVVDGGSNLRT 370
>1t6e_X Xylanase inhibitor; two beta-barrel domain structure, hydrolase inhibitor; 1.70A {Triticum aestivum} SCOP: b.50.1.2 PDB: 1t6g_A 2b42_A 3hd8_A Length = 381 Back     alignment and structure
>3aup_A SBG7S, BG, basic 7S globulin; pepsin-like fold, plant protein; 1.91A {Glycine max} Length = 403 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query160
3vla_A413 EDGP; extracellular, inhibitor, plant protein; HET 99.95
1t6e_X381 Xylanase inhibitor; two beta-barrel domain structu 99.91
3aup_A403 SBG7S, BG, basic 7S globulin; pepsin-like fold, pl 99.91
2ewy_A383 Beta-secretase 2; BACE2, aspartic protease, hydrol 99.67
2qp8_A395 Beta-secretase 1; BACE1, protease, alternative spl 99.64
3vf3_A402 Beta-secretase 1; structure-based drug design, hyd 99.6
3lpj_A455 Beta-secretase 1; alzheimer'S, aspartyl protease, 99.57
1lya_B241 Cathepsin D; lysosomal aspartic protease; HET: NAG 99.54
1j71_A334 Candidapepsin, aspartic proteinase; candida tropic 99.53
1mpp_A361 Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomu 99.53
3cms_A323 Chymosin B; hydrolase, acid proteinase; 2.00A {Bos 99.52
2qzx_A342 Candidapepsin-5; aspartic proteinase, aspartyl pro 99.52
1tzs_A351 Cathepsin E; hydrolase, aspartic protease, activat 99.52
1htr_B329 Gastricsin; aspartyl protease; 1.62A {Homo sapiens 99.51
1am5_A324 Pepsin, acid proteinase; aspartyl protease, hydrol 99.5
1dpj_A329 Proteinase A; proteinase A, hydrolase-hydrolase in 99.5
1ibq_A325 Aspergillopepsin; aspartic proteinase, hydrolase; 99.49
2apr_A325 Rhizopuspepsin; hydrolase (aspartic proteinase); 1 99.49
1izd_A323 Aspartic proteinase; sugar binding, acid protease, 99.47
4aa9_A320 Chymosin; hydrolase, aspartic peptidase, rennet; H 99.45
1miq_A375 Plasmepsin; aspartic proteinase zymogen, domain op 99.44
1oew_A329 Endothiapepsin; hydrolase, aspartic proteinase mec 99.44
3fv3_A339 SAPP1P-secreted aspartic protease 1; secreted aspa 99.43
1qdm_A 478 Prophytepsin; aspartic proteinases, saposin-like d 99.43
3c9x_A329 Trichoderma reesei aspartic protease; aspartic pro 99.43
1yg9_A330 Aspartic protease BLA G 2; allegren, hydrolase, al 99.43
1bxo_A323 Protein (penicillopepsin); hydrolase, phosphonate 99.42
3pvk_A342 Candidapepsin-2; hydrolase; 1.27A {Candida albican 99.41
2x0b_A383 Renin; hydrolase-hormone complex, hydrolase hormon 99.4
3k1w_A341 Renin; protease, alternative splicing, aspartyl pr 99.34
3psg_A370 Pepsinogen; hydrolase(acid proteinase zymogen); 1. 99.33
1wkr_A340 Polyporopepsin; hydrolase, hydrolase-hydrolase inh 99.32
2bju_A453 Plasmepsin II; aspartic proteinase, drug design, m 99.28
3qvc_A451 Histo-aspartic protease; HAP, plasmepsin, zymogen, 99.05
1b5f_A239 Protein (cardosin A); hydrolase, aspartic proteina 98.78
1b5f_B87 Protein (cardosin A); hydrolase, aspartic proteina 95.88
3s8i_A148 Protein DDI1 homolog 1; protease, structural genom 80.96
>3vla_A EDGP; extracellular, inhibitor, plant protein; HET: NAG; 0.95A {Daucus carota} PDB: 3vlb_A Back     alignment and structure
Probab=99.95  E-value=1.7e-28  Score=211.09  Aligned_cols=146  Identities=46%  Similarity=0.815  Sum_probs=123.0

Q ss_pred             cccccCcccCCCC---------CcceEEEeEEEEECCEEeeecCcccccccCCCCceEEeccccceeechHHHHHHHHHH
Q 046564            5 LIKIPLISTLAFR---------SDDYFINLKSIKVDGKVVSFDTSLLSIDSGAVGGAKISTFTPYAVLHSAIYNALAKDF   75 (160)
Q Consensus         5 ~~~TPL~~~~~~~---------s~~YyV~l~gIsVgg~~l~i~~~~~~~~~~G~GG~iiDSGt~~T~L~~~~Y~~l~~a~   75 (160)
                      ++||||+.++..+         +.+|+|+|++|+||++.++++++.|.++++|.+|+||||||++|+||+++|++|+++|
T Consensus       212 l~~tPl~~~~~~~~~~~~~~~~~~~y~V~l~~IsVgg~~l~~~~~~~~~~~~g~~~aIiDSGTslt~lp~~~y~~l~~a~  291 (413)
T 3vla_A          212 LTYTPLLTNPVSTSATSTQGEPSVEYFIGVKSIKINSKIVALNTSLLSISSAGLGGTKISTINPYTVLETSIYKAVTEAF  291 (413)
T ss_dssp             SEEEECBCCSSCCSSSCCTTCCCCSCEECCCEEEETTEEECCCGGGTSBCTTSCBCEEECSSSSSEEEEHHHHHHHHHHH
T ss_pred             eeEeecccCCccccccccccCCCceEEEEEEEEEECCEEccCCchhcccccCCCCCEEEECCCCcEEcCHHHHHHHHHHH
Confidence            8999999986432         2589999999999999999999999998889999999999999999999999999999


Q ss_pred             HHHhcccCcccCCCCCCCcccccccCCCccCCCCCCcCeEEEEEcCCCCCCCceEEEEecCceEEEeCCCeEEEEEEeCC
Q 046564           76 AKRAFDKKMIGLAPLAPFGARFNTKNVATTKNAGPAVPTMDLELRGIGNSSSNTYWRICGANSMARIKRNVMCLGFLDGG  155 (160)
Q Consensus        76 ~~~~~~~~~~~~~~~~~fdlCy~~s~~~~~~~~~~~vP~v~l~F~g~~~~~~g~~~~l~~~n~~~~~~~~~~CLa~~~~~  155 (160)
                      .+++..+++++++....|+.||+.+....++. ...+|+|+|||.|+     ++.|.|+++||++.++++..||+|+.++
T Consensus       292 ~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~-~~~lP~i~f~f~g~-----~~~~~l~~~~y~~~~~~~~~Cl~~~~~~  365 (413)
T 3vla_A          292 IKESAARNITRVASVAPFGACFSTDNILSTRL-GPSVPSIDLVLQSE-----SVVWTITGSNSMVYINDNVVCLGVVDGG  365 (413)
T ss_dssp             HHHHHHTTCCEECCCTTCSCEEECTTCCEETT-EECCCCEEEECSST-----TCEEEECHHHHEEEEETTEEEECEEEEE
T ss_pred             HHHhcccCCCcCCCCCCCcceeccCCcccccc-ccCCCcEEEEEcCC-----cEEEEeCccceEEEeCCCcEEEEEEecC
Confidence            99986444666655567899999865422111 23699999999984     5899999999999988889999999765


Q ss_pred             C
Q 046564          156 P  156 (160)
Q Consensus       156 ~  156 (160)
                      .
T Consensus       366 ~  366 (413)
T 3vla_A          366 S  366 (413)
T ss_dssp             S
T ss_pred             C
Confidence            3
>1t6e_X Xylanase inhibitor; two beta-barrel domain structure, hydrolase inhibitor; 1.70A {Triticum aestivum} SCOP: b.50.1.2 PDB: 1t6g_A 2b42_A 3hd8_A Back     alignment and structure
>3aup_A SBG7S, BG, basic 7S globulin; pepsin-like fold, plant protein; 1.91A {Glycine max} Back     alignment and structure
>2ewy_A Beta-secretase 2; BACE2, aspartic protease, hydrolase; HET: DBO; 3.10A {Homo sapiens} Back     alignment and structure
>2qp8_A Beta-secretase 1; BACE1, protease, alternative splicing, aspartyl protease, glycoprotein, hydrolase, membrane, transmembrane, zymogen; HET: TAR SC7; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 2qk5_A* 2qmf_A* 2qmg_A* 2qmd_A* 4djx_A* 3l59_A* 3l5b_A* 3l5c_A* 3l58_A* 3l5d_A* 3l5f_A* 4dju_A* 4djv_A* 4djw_A* 3l5e_A* 4djy_A* 2zhv_A 2zhs_A 2zhr_A 2zhu_A ... Back     alignment and structure
>3vf3_A Beta-secretase 1; structure-based drug design, hydrolase-hydrolase inhibitor C; HET: 0GS; 1.48A {Homo sapiens} PDB: 2f3e_A* 2f3f_A* 1ym2_A* 3dv1_A* 3dv5_A* 3k5c_A* 3k5f_A* 3k5g_A* 3pi5_A* 3qbh_A* 3duy_A* 3veu_A* 3vg1_A* 4d83_A* 4d88_A* 4d89_A* 4d8c_A* 3msk_A* 3k5d_A* 1ym4_A* ... Back     alignment and structure
>3lpj_A Beta-secretase 1; alzheimer'S, aspartyl protease, hydrolase; HET: TLA Z75; 1.79A {Homo sapiens} PDB: 3lpi_A* 3lpk_A* 3ohf_A* 3ohh_A* 3r2f_A* 3skf_A* 3skg_A* 4fse_A* 2hiz_A* 2p83_A* 2va7_A* 2va5_A* 2va6_A* Back     alignment and structure
>1lya_B Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_B* 1lyw_B* Back     alignment and structure
>1j71_A Candidapepsin, aspartic proteinase; candida tropicalis aspartic protease, SAPT1, hydrolase; 1.80A {Candida tropicalis} SCOP: b.50.1.2 Back     alignment and structure
>1mpp_A Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomucor pusillus} SCOP: b.50.1.2 PDB: 2asi_A* 2rmp_A* Back     alignment and structure
>3cms_A Chymosin B; hydrolase, acid proteinase; 2.00A {Bos taurus} SCOP: b.50.1.2 PDB: 4cms_A 1czi_E* 1cms_A Back     alignment and structure
>2qzx_A Candidapepsin-5; aspartic proteinase, aspartyl protease, CL PAIR of basic residues, glycoprotein, protease, secreted; HET: STA; 2.50A {Candida albicans} Back     alignment and structure
>1tzs_A Cathepsin E; hydrolase, aspartic protease, activation intermediate; 2.35A {Homo sapiens} Back     alignment and structure
>1htr_B Gastricsin; aspartyl protease; 1.62A {Homo sapiens} SCOP: b.50.1.2 PDB: 1avf_A Back     alignment and structure
>1am5_A Pepsin, acid proteinase; aspartyl protease, hydrolase; 2.16A {Gadus morhua} SCOP: b.50.1.2 Back     alignment and structure
>1dpj_A Proteinase A; proteinase A, hydrolase-hydrolase inhibitor COM; HET: BMA MAN NAG; 1.80A {Saccharomyces cerevisiae} SCOP: b.50.1.2 PDB: 1dp5_A* 1fmu_A* 1fmx_A* 1fq5_A* 1fq4_A* 1fq6_A* 1fq7_A* 1fq8_A* 2jxr_A* 1g0v_A* Back     alignment and structure
>1ibq_A Aspergillopepsin; aspartic proteinase, hydrolase; HET: MAN; 2.14A {Aspergillus phoenicis} SCOP: b.50.1.2 Back     alignment and structure
>2apr_A Rhizopuspepsin; hydrolase (aspartic proteinase); 1.80A {Rhizopus microsporus var} SCOP: b.50.1.2 PDB: 3apr_E* 4apr_E* 5apr_E* 6apr_E* 1uh9_A 1uh8_A 1uh7_A Back     alignment and structure
>1izd_A Aspartic proteinase; sugar binding, acid protease, hydrolase; HET: MAN; 1.90A {Aspergillus oryzae} SCOP: b.50.1.2 PDB: 1ize_A* Back     alignment and structure
>4aa9_A Chymosin; hydrolase, aspartic peptidase, rennet; HET: NAG; 1.60A {Camelus dromedarius} PDB: 4aa8_A 1czi_E* 1cms_A 4cms_A 3cms_A Back     alignment and structure
>1miq_A Plasmepsin; aspartic proteinase zymogen, domain opening, hydrolase; 2.50A {Plasmodium vivax} SCOP: b.50.1.2 PDB: 1ls5_A* Back     alignment and structure
>1oew_A Endothiapepsin; hydrolase, aspartic proteinase mechanism, atomic resolution, succinimide, anisotropic refinement; HET: SUI; 0.9A {Cryphonectria parasitica} SCOP: b.50.1.2 PDB: 1gkt_A* 1gvt_A* 1gvv_A* 1gvw_A* 1gvx_A* 1gvu_A* 1oex_A* 2jji_A* 2jjj_A* 2vs2_A* 3uri_A* 3urj_A* 3url_A* 3pww_A* 1e80_E* 1e81_E* 1e82_E* 1e5o_E* 1eed_P* 1epl_E* ... Back     alignment and structure
>3fv3_A SAPP1P-secreted aspartic protease 1; secreted aspartic protease, virulence factor, H; HET: STA; 1.85A {Candida parapsilosis} SCOP: b.50.1.0 PDB: 3tne_A* Back     alignment and structure
>1qdm_A Prophytepsin; aspartic proteinases, saposin-like domain, zymogen structure, hydrolase; 2.30A {Hordeum vulgare} SCOP: a.64.1.2 b.50.1.2 Back     alignment and structure
>3c9x_A Trichoderma reesei aspartic protease; aspartic proteinase, aspartyl protease, hydrolase; 1.70A {Trichoderma reesei} PDB: 3c9y_A* 3emy_A* Back     alignment and structure
>1yg9_A Aspartic protease BLA G 2; allegren, hydrolase, allergen; HET: NAG; 1.30A {Blattella germanica} PDB: 2nr6_A* 3liz_A* Back     alignment and structure
>1bxo_A Protein (penicillopepsin); hydrolase, phosphonate inhibitors, macrocycle; HET: MAN PP7; 0.95A {Penicillium janthinellum} SCOP: b.50.1.2 PDB: 1apu_E* 1apv_E* 1apw_E* 1apt_E* 1bxq_A* 1ppk_E* 1ppl_E* 1ppm_E* 2wea_A* 2web_A* 2wec_A* 2wed_A* 3app_A Back     alignment and structure
>3pvk_A Candidapepsin-2; hydrolase; 1.27A {Candida albicans} SCOP: b.50.1.2 PDB: 1eag_A 3q70_A* 1zap_A* 2qzw_A 2h6t_A* 2h6s_A* Back     alignment and structure
>2x0b_A Renin; hydrolase-hormone complex, hydrolase hormone complex, vasoconstrictor, glycoprotein, hypertension, serpins; 4.33A {Homo sapiens} Back     alignment and structure
>3k1w_A Renin; protease, alternative splicing, aspartyl protease, cleavage on PAIR of basic residues, disease mutation, disulfide bond, glycoprotein; HET: BFX NDG HSQ; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 3d91_A* 3g70_A* 3g6z_A* 3own_A* 2iko_A* 1bbs_A* 1rne_A* 2bkt_A* 2bks_A* 2iku_A* 2il2_A* 2ren_A* 2v0z_C* 2v10_C* 2v11_C* 2v12_C* 2v13_A* 2v16_C* 3g72_A* 3oot_A* ... Back     alignment and structure
>3psg_A Pepsinogen; hydrolase(acid proteinase zymogen); 1.65A {Sus scrofa} SCOP: b.50.1.2 PDB: 2psg_A 4pep_A* 3pep_A* 1f34_A* 1psa_A* 1yx9_A 5pep_A 1flh_A 1qrp_E* 1psn_A* 1pso_E* 3utl_A Back     alignment and structure
>1wkr_A Polyporopepsin; hydrolase, hydrolase-hydrolase inhibitor complex; HET: STA; 1.30A {Irpex lacteus} SCOP: b.50.1.2 Back     alignment and structure
>2bju_A Plasmepsin II; aspartic proteinase, drug design, malaria, aspartyl protease, glycoprotein, hydrolase, signal, zymogen; HET: IH4; 1.56A {Plasmodium falciparum} SCOP: b.50.1.2 PDB: 1pfz_A 1xdh_A* 1lf3_A 1w6h_A* 1w6i_A* 1lf4_A* 1lf2_A* 1lee_A* 1m43_A* 2igx_A* 1sme_A* 1me6_A* 1xe6_A* 1xe5_A* 2igy_A* 2r9b_A 3f9q_A 3qrv_A 3qs1_A* 2anl_A* ... Back     alignment and structure
>3qvc_A Histo-aspartic protease; HAP, plasmepsin, zymogen, hydrolase; 2.10A {Plasmodium falciparum} PDB: 3qvi_A* 3fns_A 3fnt_A* 3fnu_A* Back     alignment and structure
>1b5f_A Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2 Back     alignment and structure
>1b5f_B Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2 Back     alignment and structure
>3s8i_A Protein DDI1 homolog 1; protease, structural genomics, structural genomics consortiu retropepsin-like domain, protein turnover, hydrolase; 1.70A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 160
d1t6ex_381 b.50.1.2 (X:) Xylanase inhibitor TAXI-I {Wheat (Tr 8e-09
>d1t6ex_ b.50.1.2 (X:) Xylanase inhibitor TAXI-I {Wheat (Triticum aestivum) [TaxId: 4565]} Length = 381 Back     information, alignment and structure

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Xylanase inhibitor TAXI-I
species: Wheat (Triticum aestivum) [TaxId: 4565]

 Score = 51.2 bits (121), Expect = 8e-09
 Identities = 43/162 (26%), Positives = 68/162 (41%), Gaps = 20/162 (12%)

Query: 1   FSGLLIKIPLISTLAFRSDDYFINLKSIKVDGKVVSFDTSLLSIDSGAVGGAKISTFTPY 60
           F+  +   PL++     S  ++I+ +SI V    V          + A GG  +ST  PY
Sbjct: 188 FTQSMPYTPLVTK--GGSPAHYISARSIVVGDTRVPVPEG-----ALATGGVMLSTRLPY 240

Query: 61  AVLHSAIYNALAKDFAKRAFDKKMIGL------APLAPFGARFNTKNVATTKNAGPAVPT 114
            +L   +Y  L   F K    +   G         +APFG  ++TK +      G AVP 
Sbjct: 241 VLLRPDVYRPLMDAFTKALAAQHANGAPVARAVEAVAPFGVCYDTKTLGNN-LGGYAVPN 299

Query: 115 MDLELRGIGNSSSNTYWRICGANSMARIKRNVMCLGFLDGGP 156
           + L L G       + W + G NSM  +K+   C+ F++   
Sbjct: 300 VQLGLDG------GSDWTMTGKNSMVDVKQGTACVAFVEMKG 335

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query160
d1t6ex_381 Xylanase inhibitor TAXI-I {Wheat (Triticum aestivu 99.76
g1htr.1372 Pepsin(ogen) {Human (Homo sapiens), progastricsin 99.41
d1j71a_334 Acid protease {Yeast (Candida tropicalis) [TaxId: 99.39
d1dpja_329 Acid protease {Baker's yeast (Saccharomyces cerevi 99.34
d1eaga_342 Acid protease {Yeast (Candida albicans) [TaxId: 54 99.31
d3psga_370 Pepsin(ogen) {Pig (Sus scrofa) [TaxId: 9823]} 99.28
d2apra_325 Acid protease {Bread mold (Rhizopus chinensis) [Ta 99.27
d1smra_335 Chymosin (synonym: renin) {Mouse (Mus musculus) [T 99.26
d3cmsa_323 Chymosin (synonym: renin) {Cow (Bos taurus) [TaxId 99.24
d2qp8a1387 beta-secretase (memapsin) {Human (Homo sapiens) [T 99.17
d1qdma2337 Plant acid proteinase, phytepsin {Barley (Hordeum 99.16
d1hrna_337 Chymosin (synonym: renin) {Human (Homo sapiens) [T 99.15
d1mppa_357 Pepsin {Mucor pusillus [TaxId: 4840]} 99.12
d1bxoa_323 Acid protease {Fungus (Penicillium janthinellum), 99.1
d1izea_323 Acid protease {Fungus (Aspergillus oryzae) [TaxId: 99.07
d1am5a_324 Pepsin(ogen) {Atlantic cod (Gadus morhua) [TaxId: 99.05
d1oewa_330 Endothiapepsin {Chestnut blight fungus (Endothia p 99.03
d1miqa_373 Plasmepsin (a hemoglobin-degrading enzyme) {Plasmo 99.03
g1b5f.1326 Plant acid proteinase, phytepsin {Cynara carduncul 99.01
g1lya.1338 Cathepsin D {Human (Homo sapiens) [TaxId: 9606]} 98.98
d1wkra_340 Acid protease {Irpex lacteus (Polyporus tulipifera 98.98
d2bjua1329 Plasmepsin (a hemoglobin-degrading enzyme) {Plasmo 98.87
>d1t6ex_ b.50.1.2 (X:) Xylanase inhibitor TAXI-I {Wheat (Triticum aestivum) [TaxId: 4565]} Back     information, alignment and structure
class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Xylanase inhibitor TAXI-I
species: Wheat (Triticum aestivum) [TaxId: 4565]

Probab=99.76  E-value=1.6e-18  Score=142.34  Aligned_cols=138  Identities=30%  Similarity=0.531  Sum_probs=109.8

Q ss_pred             CCcccccCcccCCCCCcceEEEeEEEEECCEEeeecCcccccccCCCCceEEeccccceeechHHHHHHHHHHHHHhccc
Q 046564            3 GLLIKIPLISTLAFRSDDYFINLKSIKVDGKVVSFDTSLLSIDSGAVGGAKISTFTPYAVLHSAIYNALAKDFAKRAFDK   82 (160)
Q Consensus         3 ~~~~~TPL~~~~~~~s~~YyV~l~gIsVgg~~l~i~~~~~~~~~~G~GG~iiDSGt~~T~L~~~~Y~~l~~a~~~~~~~~   82 (160)
                      +.+.+||++.+...  .+|.|.|.+|+|+++.++.+....     ..+++||||||++++||+++|+++.+++.+++...
T Consensus       190 g~~~~~pi~~~~~~--~~~~v~l~~i~v~~~~~~~~~~~~-----~~~~~i~DTGtt~~~lp~~~~~~i~~~~~~~~~~~  262 (381)
T d1t6ex_         190 QSMPYTPLVTKGGS--PAHYISARSIVVGDTRVPVPEGAL-----ATGGVMLSTRLPYVLLRPDVYRPLMDAFTKALAAQ  262 (381)
T ss_dssp             TTCCEEECBCCTTC--CSCEECEEEEEETTEECCCCTTCS-----CTTCEEECSSCSSEEECHHHHHHHHHHHHHHHHHC
T ss_pred             CceEEEeeeccCCC--ceeEEEEEEEeeCCeeeccCcccc-----cCcceEEecCCceEECCHHHHHHHHHHHHHHhccc
Confidence            46889999987654  479999999999999998765432     35689999999999999999999999999877532


Q ss_pred             C---c---ccCCCCCCCcccccccCCCccCCCCCCcCeEEEEEcCCCCCCCceEEEEecCceEEEeCCCeEEEEEEeC
Q 046564           83 K---M---IGLAPLAPFGARFNTKNVATTKNAGPAVPTMDLELRGIGNSSSNTYWRICGANSMARIKRNVMCLGFLDG  154 (160)
Q Consensus        83 ~---~---~~~~~~~~fdlCy~~s~~~~~~~~~~~vP~v~l~F~g~~~~~~g~~~~l~~~n~~~~~~~~~~CLa~~~~  154 (160)
                      .   .   ...+...++++||+.+....... ...+|.|+|+|+|      |+.+.+++++|++...++..||+|.+.
T Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~P~i~~~f~~------~~~~~i~~~~y~~~~~~~~~Cl~i~~~  333 (381)
T d1t6ex_         263 HANGAPVARAVEAVAPFGVCYDTKTLGNNLG-GYAVPNVQLGLDG------GSDWTMTGKNSMVDVKQGTACVAFVEM  333 (381)
T ss_dssp             -------CCEECCCTTCSCEEEGGGCCEETT-EECCCCEEEEETT------SCEEEECHHHHEEEEETTEEEESEEEC
T ss_pred             ccccccccccccccCCcceeecccccccccc-ccccccEEEEEcC------CcEEEEChhHeEEEeCCCcEEEEEEec
Confidence            1   1   12234568899999865432221 3478999999998      699999999999998889999999864
>d1j71a_ b.50.1.2 (A:) Acid protease {Yeast (Candida tropicalis) [TaxId: 5482]} Back     information, alignment and structure
>d1dpja_ b.50.1.2 (A:) Acid protease {Baker's yeast (Saccharomyces cerevisiae), proteinase A [TaxId: 4932]} Back     information, alignment and structure
>d1eaga_ b.50.1.2 (A:) Acid protease {Yeast (Candida albicans) [TaxId: 5476]} Back     information, alignment and structure
>d3psga_ b.50.1.2 (A:) Pepsin(ogen) {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d2apra_ b.50.1.2 (A:) Acid protease {Bread mold (Rhizopus chinensis) [TaxId: 4843]} Back     information, alignment and structure
>d1smra_ b.50.1.2 (A:) Chymosin (synonym: renin) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d3cmsa_ b.50.1.2 (A:) Chymosin (synonym: renin) {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d2qp8a1 b.50.1.2 (A:60-446) beta-secretase (memapsin) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qdma2 b.50.1.2 (A:2-247,A:248-338) Plant acid proteinase, phytepsin {Barley (Hordeum vulgare) [TaxId: 4513]} Back     information, alignment and structure
>d1hrna_ b.50.1.2 (A:) Chymosin (synonym: renin) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1mppa_ b.50.1.2 (A:) Pepsin {Mucor pusillus [TaxId: 4840]} Back     information, alignment and structure
>d1bxoa_ b.50.1.2 (A:) Acid protease {Fungus (Penicillium janthinellum), penicillopepsin [TaxId: 5079]} Back     information, alignment and structure
>d1izea_ b.50.1.2 (A:) Acid protease {Fungus (Aspergillus oryzae) [TaxId: 5062]} Back     information, alignment and structure
>d1am5a_ b.50.1.2 (A:) Pepsin(ogen) {Atlantic cod (Gadus morhua) [TaxId: 8049]} Back     information, alignment and structure
>d1oewa_ b.50.1.2 (A:) Endothiapepsin {Chestnut blight fungus (Endothia parasitica) [TaxId: 5116]} Back     information, alignment and structure
>d1miqa_ b.50.1.2 (A:) Plasmepsin (a hemoglobin-degrading enzyme) {Plasmodium vivax [TaxId: 5855]} Back     information, alignment and structure
>d1wkra_ b.50.1.2 (A:) Acid protease {Irpex lacteus (Polyporus tulipiferae), Polyporopepsin [TaxId: 5319]} Back     information, alignment and structure
>d2bjua1 b.50.1.2 (A:1-329) Plasmepsin (a hemoglobin-degrading enzyme) {Plasmodium falciparum, plasmepsin II [TaxId: 5833]} Back     information, alignment and structure