Citrus Sinensis ID: 046570

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-----
Protein Sequence
TNSNSNNNDRIKGSWSPQEDATLIKLVEQHGPRNWSMISSGIPGRSGKSCRLRWCNQLSPTVQHRPFTPAEDSIIIQAHAVHGNKWATIARSLPGRTDNAIKNHWNSTLRRKRMAELSSASSESNSVMMKRPGFENNISSAESDSDSGGIKRQCLRVSQEHDSYNVEAGIVGPETFGGEKVEDEEKLKINKECDGDGDGGKIEKEKGEDRCTVDMEMEESCLFTIMRRMIAEEVRNQFDGLRAQAGLRFSVQKDT
Secondary Structure (PSIPRED)
ccccccccccccccccHHHHHHHHHHHHHHccccHHHHHHcccccccHHHHHHHHcccccccccccccHHHHHHHHHHHHHcccHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccHccccccccccHHHHHHHHHHHHHHccccHHHHHHccccccHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHcccHHHHHcccccccHHHHHHHHHcccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcHHHccccccHHccccccccccccc
Coil and Loop (DISEMBL)
tnsnsnnndrikgswspqeDATLIKLVEqhgprnwsmissgipgrsgkscrlrwcnqlsptvqhrpftpaedsIIIQAHAvhgnkwatiarslpgrtdnaikNHWNSTLRRKRMAELssassesnsvmmkrpgfennissaesdsdsggikrqCLRVSqehdsynveagivgpetfggekvedeeKLKInkecdgdgdggkiekekgedrctvdMEMEESCLFTIMRRMIAEEVRNQFDGLRAQAGLRFSVQKDT
Flexible Loop (DISEMBL)
tnsnsnnndrikgswspqeDATLIKLVEQHGPRNWSMISSGIPGRSGKSCRLRWCNQLSPTVQHRPFTPAEDSIIIQAHAVHGNKWATIarslpgrtdnaiKNHWNSTLRRKRMAELSsassesnsvmmkrPGFENNIssaesdsdsggIKRQCLRVSQehdsynveagivgpetfggekvedeeklkinkecdgdgdggkiekekgedrctvdmEMEESCLFTIMRRMIAEEVRNQFDglraqaglrfsvqkdt
Low Complexity Region (SEG)
TNSNSNNNDRIKGSWSPQEDATLIKLVEQHGPRNWSMISSGIPGRSGKSCRLRWCNQLSPTVQHRPFTPAEDSIIIQAHAVHGNKWATIARSLPGRTDNAIKNHWNSTLRRKRMaelssassesnsVMMKRPGFENNISSAESDSDSGGIKRQCLRVSQEHDSYNVEAGIVGPETFGGEKVEDEEKLKINkecdgdgdggkiekekgedRCTVDMEMEESCLFTIMRRMIAEEVRNQFDGLRAQAGLRFSVQKDT
Disordered region (IsUnstruct)
**********************LIKLVE*****NWSMIS**I****GKSCRLRWCNQLSPTVQHRPFTPAEDSIIIQAHAVHGNKWATIARSLPGRTDNAIKNHW****************************************************************I**********************************************MEESCLFTIMRRMIAEEVRNQFDGLRA************
Disordered Region (DISOPRED)
**************WSPQEDATLIKLVEQHGPRNWSMISSGIPGRSGKSCRLRWCNQLSPTVQHRPFTPAEDSIIIQAHAVHGNKWATIARSLPGRTDNAIKNHWNSTL*******************************************************************************************************************IMRRMIAEEVR********************
Disordered Region (DISEMBL)
**************WSPQEDATLIKLVEQHGPRNWSMISSGIPGRSGKSCRLRWCNQLSPTVQHRPFTPAEDSIIIQAHAVHGNKWATIARSLPGRTDNAIKNHWNSTLRRK**************VMMKRPGFENNI************KRQCLRVSQEHDSYNVEAGIVGPETFGGEKVEDEEKLKINKECDGDGDGGKIEKEKGEDRCTVDMEMEESCLFTIMRRMIAEEVRNQFDGLRAQAGLRFSVQKDT
Disordered Region (DISPRO)
*NSNSNNNDRIKGSWSPQEDATLIKLVEQHGPRNWSMISSGIPGRSGKSCRLRWCNQLSPTVQHRPFTPAEDSIIIQAHAVHGNKWATIARSLPGRTDNAIKNHWNSTLRRKRMAELS****************************************************************************************GEDRCTVDMEMEESCLFTIMRRMIAEEVRNQFDGLRAQAGLRFS*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
TNSNSNNNDRIKGSWSPQEDATLIKLVEQHGPRNWSMISSGIPGRSGKSCRLRWCNQLSPTVQHRPFTPAEDSIIIQAHAVHGNKWATIARSLPGRTDNAIKNHWNSTLRRKRMAELSSASSESNSVMMKRPGFENNISSAESDSDSGGIKRQCLRVSQEHDSYNVEAGIVGPETFGGEKVEDEEKLKINKECDGDGDGGKIEKEKGEDRCTVDMEMEESCLFTIMRRMIAEEVRNQFDGLRAQAGLRFSVQKDT
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	255	2.2.26 [Sep-21-2011]
Q9FDW1	305	Transcription factor MYB4	no	no	0.407	0.340	0.730	2e-41
P52550	757	Myb-related protein A OS=	yes	no	0.415	0.140	0.547	2e-30
P04197	657	Myb protein OS=Drosophila	yes	no	0.831	0.322	0.361	4e-30
P10242	640	Transcriptional activator	no	no	0.415	0.165	0.566	5e-30
P46200	640	Transcriptional activator	no	no	0.521	0.207	0.479	6e-30
P01103	641	Transcriptional activator	no	no	0.415	0.165	0.566	7e-30
P51960	751	Myb-related protein A OS=	no	no	0.415	0.141	0.547	7e-30
P10243	752	Myb-related protein A OS=	no	no	0.415	0.140	0.547	7e-30
P06876	636	Transcriptional activator	no	no	0.415	0.166	0.566	7e-30
Q03237	686	Myb-related protein B OS=	no	no	0.415	0.154	0.528	3e-29

>sp|Q9FDW1|MYB44_ARATH Transcription factor MYB44 OS=Arabidopsis thaliana GN=MYB44 PE=2 SV=1

 Score =  169 bits (428), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 76/104 (73%), Positives = 87/104 (83%)

Query: 9   DRIKGSWSPQEDATLIKLVEQHGPRNWSMISSGIPGRSGKSCRLRWCNQLSPTVQHRPFT 68
           DRIKG WSP+ED  L +LV ++GPRNW++IS  IPGRSGKSCRLRWCNQLSP V+HRPF+
Sbjct: 3   DRIKGPWSPEEDEQLRRLVVKYGPRNWTVISKSIPGRSGKSCRLRWCNQLSPQVEHRPFS 62

Query: 69  PAEDSIIIQAHAVHGNKWATIARSLPGRTDNAIKNHWNSTLRRK 112
             ED  I +AHA  GNKWATIAR L GRTDNA+KNHWNSTL+RK
Sbjct: 63  AEEDETIARAHAQFGNKWATIARLLNGRTDNAVKNHWNSTLKRK 106

Transcription factor. Represses the expression of protein phosphatases 2C in response to abscisic acid (ABA). Confers resistance to abiotic stresses dependent of ABA.
Arabidopsis thaliana (taxid: 3702)

>sp|P52550|MYBA_CHICK Myb-related protein A OS=Gallus gallus GN=MYBL1 PE=2 SV=1

 Score =  132 bits (333), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 58/106 (54%), Positives = 79/106 (74%)

Query: 7   NNDRIKGSWSPQEDATLIKLVEQHGPRNWSMISSGIPGRSGKSCRLRWCNQLSPTVQHRP 66
           N + IKG W+ +ED  +I+LV+++GP+ WS+I+  + GR GK CR RW N L+P V+   
Sbjct: 82  NPELIKGPWTKEEDQRVIELVQKYGPKRWSLIAKHLKGRIGKQCRERWHNHLNPEVKKSS 141

Query: 67  FTPAEDSIIIQAHAVHGNKWATIARSLPGRTDNAIKNHWNSTLRRK 112
           +T AED +I +AH   GN+WA IA+ LPGRTDN+IKNHWNST+RRK
Sbjct: 142 WTEAEDRVIYEAHKRLGNRWAEIAKLLPGRTDNSIKNHWNSTMRRK 187

Strong transcriptional activator; DNA-binding protein that specifically recognize the sequence 5'-YAAC[GT]G-3'. Could have a role in the proliferation and/or differentiation of neurogenic, spermatogenic and B-lymphoid cells.

Gallus gallus (taxid: 9031)

>sp|P04197|MYB_DROME Myb protein OS=Drosophila melanogaster GN=Myb PE=1 SV=2

 Score =  131 bits (330), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 91/252 (36%), Positives = 124/252 (49%), Gaps = 40/252 (15%)

Query: 7   NNDRIKGSWSPQEDATLIKLVEQHGPRNWSMISSGIPGRSGKSCRLRWCNQLSPTVQHRP 66
           N + IKG W+  ED  +IKLV   GP+ W++I+  + GR GK CR RW N L+P ++   
Sbjct: 131 NPELIKGPWTRDEDDMVIKLVRNFGPKKWTLIARYLNGRIGKQCRERWHNHLNPNIKKTA 190

Query: 67  FTPAEDSIIIQAHAVHGNKWATIARSLPGRTDNAIKNHWNSTLRRKRMAELSSASSESNS 126
           +T  ED II QAH   GN+WA IA+ LPGRTDNAIKNHWNST+RRK   E  S ++  + 
Sbjct: 191 WTEKEDEIIYQAHLELGNQWAKIAKRLPGRTDNAIKNHWNSTMRRKYDVERRSVNASGSD 250

Query: 127 VMMKRPGFENNISSAESDSDSGGIKRQCLRVSQEHDSYNVEAGIVGPETFGGEKVEDEEK 186
           +   R      I        SGGI + C+   Q    +N E+        GGE V     
Sbjct: 251 LKSSRTHLITLIK-------SGGISK-CMNNMQ----HNKES--------GGEAV----- 285

Query: 187 LKINKECDGDG------DGGKIEKEKGEDR----CTVDMEMEESCLFTIMRR--MIAEEV 234
              NK  + DG       GG + +E  +D         + M+     T+ R+  +I +  
Sbjct: 286 ---NKSENADGASVTAVKGGDLAQESQDDHQKGSNLAHLSMQHLIKLTMPRQTPIILKRT 342

Query: 235 RNQFDGLRAQAG 246
           R        QAG
Sbjct: 343 RKHIPETHHQAG 354

DNA-binding protein that specifically recognizes the sequence 5'-YAAC[GT]G-3'. Component of the DREAM complex, a multiprotein complex that can both act as a transcription activator or repressor depending on the context. In follicle cells, the complex plays a central role in the site-specific DNA replication at the chorion loci. During development, the complex represses transcription of developmentally controlled E2F target genes.

Drosophila melanogaster (taxid: 7227)

>sp|P10242|MYB_HUMAN Transcriptional activator Myb OS=Homo sapiens GN=MYB PE=1 SV=2

 Score =  131 bits (329), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 60/106 (56%), Positives = 78/106 (73%)

Query: 7   NNDRIKGSWSPQEDATLIKLVEQHGPRNWSMISSGIPGRSGKSCRLRWCNQLSPTVQHRP 66
           N + IKG W+ +ED  +I+LV+++GP+ WS+I+  + GR GK CR RW N L+P V+   
Sbjct: 87  NPELIKGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTS 146

Query: 67  FTPAEDSIIIQAHAVHGNKWATIARSLPGRTDNAIKNHWNSTLRRK 112
           +T  ED II QAH   GN+WA IA+ LPGRTDNAIKNHWNST+RRK
Sbjct: 147 WTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 192

Transcriptional activator; DNA-binding protein that specifically recognize the sequence 5'-YAAC[GT]G-3'. Plays an important role in the control of proliferation and differentiation of hematopoietic progenitor cells.

Homo sapiens (taxid: 9606)

>sp|P46200|MYB_BOVIN Transcriptional activator Myb OS=Bos taurus GN=MYB PE=2 SV=1

 Score =  131 bits (329), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 71/148 (47%), Positives = 94/148 (63%), Gaps = 15/148 (10%)

Query: 7   NNDRIKGSWSPQEDATLIKLVEQHGPRNWSMISSGIPGRSGKSCRLRWCNQLSPTVQHRP 66
           N + IKG W+ +ED  +I+LV+++GP+ WS+I+  + GR GK CR RW N L+P V+   
Sbjct: 87  NPELIKGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTS 146

Query: 67  FTPAEDSIIIQAHAVHGNKWATIARSLPGRTDNAIKNHWNSTLRRK-----RMAELSSAS 121
           +T  ED II QAH   GN+WA IA+ LPGRTDNAIKNHWNST+RRK      + E S AS
Sbjct: 147 WTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKVEQEGYLQESSKAS 206

Query: 122 S-------ESNSVMMKRPGFENNISSAE 142
                   + NS +M   GF +   SA+
Sbjct: 207 QPAVTTSFQKNSHLM---GFTHAPPSAQ 231

Transcriptional activator; DNA-binding protein that specifically recognize the sequence 5'-YAAC[GT]G-3'. Plays an important role in the control of proliferation and differentiation of hematopoietic progenitor cells.

Bos taurus (taxid: 9913)

>sp|P01103|MYB_CHICK Transcriptional activator Myb OS=Gallus gallus GN=MYB PE=2 SV=1

 Score =  130 bits (328), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 60/106 (56%), Positives = 78/106 (73%)

Query: 7   NNDRIKGSWSPQEDATLIKLVEQHGPRNWSMISSGIPGRSGKSCRLRWCNQLSPTVQHRP 66
           N + IKG W+ +ED  +I+LV+++GP+ WS+I+  + GR GK CR RW N L+P V+   
Sbjct: 87  NPELIKGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTS 146

Query: 67  FTPAEDSIIIQAHAVHGNKWATIARSLPGRTDNAIKNHWNSTLRRK 112
           +T  ED II QAH   GN+WA IA+ LPGRTDNAIKNHWNST+RRK
Sbjct: 147 WTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 192

Transcriptional activator; DNA-binding protein that specifically recognize the sequence 5'-YAAC[GT]G-3'. Plays an important role in the control of proliferation and differentiation of hematopoietic progenitor cells.

Gallus gallus (taxid: 9031)

>sp|P51960|MYBA_MOUSE Myb-related protein A OS=Mus musculus GN=Mybl1 PE=2 SV=2

 Score =  130 bits (328), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 58/106 (54%), Positives = 78/106 (73%)

Query: 7   NNDRIKGSWSPQEDATLIKLVEQHGPRNWSMISSGIPGRSGKSCRLRWCNQLSPTVQHRP 66
           N + IKG W+ +ED  +I+LV+++GP+ WS+I+  + GR GK CR RW N L+P V+   
Sbjct: 82  NPELIKGPWTKEEDQRVIELVQKYGPKRWSLIAKHLKGRIGKQCRERWHNHLNPEVKKSS 141

Query: 67  FTPAEDSIIIQAHAVHGNKWATIARSLPGRTDNAIKNHWNSTLRRK 112
           +T  ED II +AH   GN+WA IA+ LPGRTDN+IKNHWNST+RRK
Sbjct: 142 WTEEEDRIIYEAHKRLGNRWAEIAKLLPGRTDNSIKNHWNSTMRRK 187

Strong transcriptional activator; DNA-binding protein that specifically recognize the sequence 5'-YAAC[GT]G-3'. Could have a role in the proliferation and/or differentiation of neurogenic, spermatogenic and B-lymphoid cells.

Mus musculus (taxid: 10090)

>sp|P10243|MYBA_HUMAN Myb-related protein A OS=Homo sapiens GN=MYBL1 PE=1 SV=2

 Score =  130 bits (328), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 58/106 (54%), Positives = 78/106 (73%)

Query: 7   NNDRIKGSWSPQEDATLIKLVEQHGPRNWSMISSGIPGRSGKSCRLRWCNQLSPTVQHRP 66
           N + IKG W+ +ED  +I+LV+++GP+ WS+I+  + GR GK CR RW N L+P V+   
Sbjct: 82  NPELIKGPWTKEEDQRVIELVQKYGPKRWSLIAKHLKGRIGKQCRERWHNHLNPEVKKSS 141

Query: 67  FTPAEDSIIIQAHAVHGNKWATIARSLPGRTDNAIKNHWNSTLRRK 112
           +T  ED II +AH   GN+WA IA+ LPGRTDN+IKNHWNST+RRK
Sbjct: 142 WTEEEDRIIYEAHKRLGNRWAEIAKLLPGRTDNSIKNHWNSTMRRK 187

Strong transcriptional activator; DNA-binding protein that specifically recognize the sequence 5'-YAAC[GT]G-3'. Could have a role in the proliferation and/or differentiation of neurogenic, spermatogenic and B-lymphoid cells.

Homo sapiens (taxid: 9606)

>sp|P06876|MYB_MOUSE Transcriptional activator Myb OS=Mus musculus GN=Myb PE=1 SV=2

 Score =  130 bits (328), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 60/106 (56%), Positives = 78/106 (73%)

Query: 7   NNDRIKGSWSPQEDATLIKLVEQHGPRNWSMISSGIPGRSGKSCRLRWCNQLSPTVQHRP 66
           N + IKG W+ +ED  +I+LV+++GP+ WS+I+  + GR GK CR RW N L+P V+   
Sbjct: 87  NPELIKGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTS 146

Query: 67  FTPAEDSIIIQAHAVHGNKWATIARSLPGRTDNAIKNHWNSTLRRK 112
           +T  ED II QAH   GN+WA IA+ LPGRTDNAIKNHWNST+RRK
Sbjct: 147 WTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 192

Transcriptional activator; DNA-binding protein that specifically recognize the sequence 5'-YAAC[GT]G-3'. Plays an important role in the control of proliferation and differentiation of hematopoietic progenitor cells.

Mus musculus (taxid: 10090)

>sp|Q03237|MYBB_CHICK Myb-related protein B OS=Gallus gallus GN=MYBL2 PE=1 SV=1

 Score =  129 bits (323), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 56/106 (52%), Positives = 78/106 (73%)

Query: 7   NNDRIKGSWSPQEDATLIKLVEQHGPRNWSMISSGIPGRSGKSCRLRWCNQLSPTVQHRP 66
           N D +KG W+ +ED  +I+LV+++G + W++I+  + GR GK CR RW N L+P V+   
Sbjct: 78  NPDLVKGPWTKEEDQKVIELVKKYGTKQWTLIAKHLKGRLGKQCRERWHNHLNPEVKKSS 137

Query: 67  FTPAEDSIIIQAHAVHGNKWATIARSLPGRTDNAIKNHWNSTLRRK 112
           +T  ED II +AH V GN+WA IA+ LPGRTDNA+KNHWNST++RK
Sbjct: 138 WTEEEDRIIFEAHKVLGNRWAEIAKLLPGRTDNAVKNHWNSTIKRK 183

Represses v-myb- and c-myb-mediated activation of the mim-1 gene, probably by competing with other myb proteins for binding sites. It is an inhibitory member of the myb family.

Gallus gallus (taxid: 9031)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	255
225448491	253	PREDICTED: uncharacterized protein LOC10	0.937	0.944	0.622	4e-73
449460939	284	PREDICTED: uncharacterized protein LOC10	0.858	0.771	0.582	1e-68
224098716	259	predicted protein [Populus trichocarpa]	0.964	0.949	0.576	3e-66
255574816	264	r2r3-myb transcription factor, putative	0.898	0.867	0.562	4e-62
356499219	247	PREDICTED: myb-related protein A [Glycin	0.858	0.886	0.516	2e-51
89058604	374	R2R3-MYB transcription factor MYB7 [Pinu	0.407	0.278	0.807	4e-48
148907117	418	unknown [Picea sitchensis]	0.423	0.258	0.805	5e-48
147744718	416	R2R3-MYB transcription factor MYB9 [Pice	0.423	0.259	0.805	6e-48
145839463	260	R2R3-MYB transcription factor MYB9 [Pice	0.423	0.415	0.805	3e-47
357492747	288	Myb transcription factor [Medicago trunc	0.423	0.375	0.803	5e-47

>gi|225448491|ref|XP_002272706.1| PREDICTED: uncharacterized protein LOC100260493 [Vitis vinifera]

 Score =  280 bits (716), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 158/254 (62%), Positives = 193/254 (75%), Gaps = 15/254 (5%)

Query: 5   SNNNDRIKGSWSPQEDATLIKLVEQHGPRNWSMISSGIPGRSGKSCRLRWCNQLSPTVQH 64
           +   DRIKGSWSPQEDA+L+KLVE+HGPRNWS+IS+GIPGRSGKSCRLRWCNQLSP VQH
Sbjct: 4   TTGGDRIKGSWSPQEDASLVKLVEEHGPRNWSLISAGIPGRSGKSCRLRWCNQLSPEVQH 63

Query: 65  RPFTPAEDSIIIQAHAVHGNKWATIARSLPGRTDNAIKNHWNSTLRRKRMAELSSASSES 124
           RPF+PAED++I+QAHAVHGNKWATIAR LPGRTDNAIKNHWNSTLRR+R+ ELSSASSES
Sbjct: 64  RPFSPAEDAVIVQAHAVHGNKWATIARILPGRTDNAIKNHWNSTLRRRRVGELSSASSES 123

Query: 125 NSVMMKRPGFENNISSAESDSDSGGIKRQCLRVSQEHDSYN-VEAGIVGPETFGGEKVED 183
           NS  MKRP F+  +SS ESDS   G+KRQ +  S EH+S + V+A    PET        
Sbjct: 124 NS-AMKRPSFDATVSS-ESDS---GLKRQLVGASPEHNSCDRVKA---EPETSLTLSPPG 175

Query: 184 EEKLKI---NKECDGDGDGGKIEKEKGEDRCTVDMEMEESCLFTIMRRMIAEEVRNQFDG 240
           +  + +   ++  D   +G +I +++GE RC V  EM ++CL  I++RMIAEEVRN F  
Sbjct: 176 DSVVTLPVGDRVEDARDEGARITRKEGE-RCAV--EMADTCLVKIIQRMIAEEVRNYFIA 232

Query: 241 LRAQAGLRFSVQKD 254
           LRA+ GLR   + D
Sbjct: 233 LRAEDGLRVRPELD 246

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449460939|ref|XP_004148201.1| PREDICTED: uncharacterized protein LOC101207929 [Cucumis sativus] gi|449507813|ref|XP_004163135.1| PREDICTED: uncharacterized LOC101207929 [Cucumis sativus]

 Score =  265 bits (677), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 148/254 (58%), Positives = 177/254 (69%), Gaps = 35/254 (13%)

Query: 10  RIKGSWSPQEDATLIKLVEQHGPRNWSMISSGIPGRSGKSCRLRWCNQLSPTVQHRPFTP 69
           R+KGSWSPQEDATLIKLVEQHGPRNWS+IS+GIPGRSGKSCRLRWCNQLSPTVQHRPFTP
Sbjct: 26  RVKGSWSPQEDATLIKLVEQHGPRNWSLISTGIPGRSGKSCRLRWCNQLSPTVQHRPFTP 85

Query: 70  AEDSIIIQAHAVHGNKWATIARSLPGRTDNAIKNHWNSTLRRKRMAELSSASSESNSVMM 129
           AED++I+QAHAVHGNKW+TIARSLPGRTDNAIKNHWNSTLRR+R A+LSS S    +  +
Sbjct: 86  AEDALILQAHAVHGNKWSTIARSLPGRTDNAIKNHWNSTLRRRRDADLSSDS----TAFL 141

Query: 130 KRPGFENNISSA-----ESDSDSGGIKRQCLRVSQEHDSYNVEAGIVGPET-----FGGE 179
           KRP +E + S++     + D     +KR C       D  +V  G   PET       GE
Sbjct: 142 KRPSYEVSRSASDDDDNDDDDSEASLKRTCF------DRNSVGGG--EPETSLRLSLPGE 193

Query: 180 KV---EDEEKLKINKECDGDGDGGK------IEKEKGEDRCTVDMEMEESCLFTIMRRMI 230
            V   E + K+K     + + + G+       E+EKG  +  VD    ESCL TIM+RMI
Sbjct: 194 VVVAAEMDVKVKEEVTVESEKNDGRRRVVAAAEEEKGNRKKEVD----ESCLATIMQRMI 249

Query: 231 AEEVRNQFDGLRAQ 244
           A+EVRN  D LRA+
Sbjct: 250 AQEVRNYIDSLRAR 263

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224098716|ref|XP_002311241.1| predicted protein [Populus trichocarpa] gi|222851061|gb|EEE88608.1| predicted protein [Populus trichocarpa]

 Score =  257 bits (657), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 151/262 (57%), Positives = 185/262 (70%), Gaps = 16/262 (6%)

Query: 3   SNSNNNDRIKGSWSPQEDATLIKLVEQHGPRNWSMISSGIPGRSGKSCRLRWCNQLSPTV 62
           S +  + RIKGSWSPQEDATLIKLVEQHGPRNWSMIS+GIPGRSGKSCRLRWCNQLSP V
Sbjct: 3   SVNGGDHRIKGSWSPQEDATLIKLVEQHGPRNWSMISTGIPGRSGKSCRLRWCNQLSPEV 62

Query: 63  QHRPFTPAEDSIIIQAHAVHGNKWATIARSLPGRTDNAIKNHWNSTLRRKRMAELSSASS 122
           QHRPFTPAED+ I+QAHA+HGNKWATIAR LPGRTDNAIKNHWNSTLRRKR +   S++S
Sbjct: 63  QHRPFTPAEDAKIVQAHAIHGNKWATIARLLPGRTDNAIKNHWNSTLRRKRGS--VSSAS 120

Query: 123 ESNSVMMKRPGFENNISSAESDSDSGGIKRQCLRVSQEHDSYNVEAGIVGPETF------ 176
             ++ + KR   E +   +ES+SDSG  KRQCL  S  H+S N + G+ GPET       
Sbjct: 121 SESNSVFKRSTLEVS-VVSESESDSGS-KRQCLHASPGHNSVNGDVGVDGPETSLTLSPP 178

Query: 177 --GGEKVEDEEKLKINKECDG-DGDGGK-IEKEKGEDRCTVDMEMEESCLFTIMRRMIAE 232
             G   +   EKLK     +G + D G+ I K+  + RCT   EM+E C+  +++++I E
Sbjct: 179 GDGFVSMAVAEKLKEGVAVNGREKDLGESIMKDAEKIRCT--EEMDEDCVRALIQKIIQE 236

Query: 233 EVRNQFDGLRAQAGLRFSVQKD 254
           EVR  FD L+ + G+     KD
Sbjct: 237 EVRIYFDRLKTRNGVTIGSLKD 258

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255574816|ref|XP_002528315.1| r2r3-myb transcription factor, putative [Ricinus communis] gi|223532270|gb|EEF34073.1| r2r3-myb transcription factor, putative [Ricinus communis]

 Score =  243 bits (621), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 145/258 (56%), Positives = 168/258 (65%), Gaps = 29/258 (11%)

Query: 9   DRIKGSWSPQEDATLIKLVEQHGPRNWSMISSGIPGRSGKSCRLRWCNQLSPTVQHRPFT 68
           +RIKGSWSPQEDA LIKLVEQHGPRNWS+IS+GIPGRSGKSCRLRWCNQLSP VQHRPFT
Sbjct: 13  ERIKGSWSPQEDANLIKLVEQHGPRNWSLISTGIPGRSGKSCRLRWCNQLSPEVQHRPFT 72

Query: 69  PAEDSIIIQAHAVHGNKWATIARSLPGRTDNAIKNHWNSTLRRKRMAELSSASSESNSVM 128
           P ED++I+QAHAVHGNKWATIAR LPGRTDNAIKNHWNSTLRRKR+AE  S++S  ++  
Sbjct: 73  PDEDAVIVQAHAVHGNKWATIARLLPGRTDNAIKNHWNSTLRRKRIAE-FSSASSESNSA 131

Query: 129 MKRPGF--ENNISSAESDSDSGGIKRQCLRVS--QEHDSYN-VEAGIVGPETFGGEKVED 183
           +KR     ++   S      +   KRQCL  S   E  S+N  +A +V PET        
Sbjct: 132 IKRLSLDGDSESDSESGSDSAAAAKRQCLGGSGCTEDSSFNGGDAKVVEPETL------- 184

Query: 184 EEKLKINKECDGDGDGGKI-------------EKEKGEDRCTVDMEMEESCLFTIMRRMI 230
              L ++   DG                      + G D   +  E EESCL TIMR+MI
Sbjct: 185 ---LTLSPPGDGFVTAAAAIGEKTEEEEEEVEVVKGGGDNGRLVREEEESCLLTIMRKMI 241

Query: 231 AEEVRNQFDGLRAQAGLR 248
           A EVRN  D LRAQ G R
Sbjct: 242 AVEVRNYVDRLRAQDGPR 259

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356499219|ref|XP_003518439.1| PREDICTED: myb-related protein A [Glycine max]

 Score =  208 bits (529), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 122/236 (51%), Positives = 154/236 (65%), Gaps = 17/236 (7%)

Query: 8   NDRIKGSWSPQEDATLIKLVEQHGPRNWSMISSGIPGRSGKSCRLRWCNQLSPTVQHRPF 67
           +DR+KGSWSPQEDATL+KLV +HG RNWS+IS+GI GRSGKSCRLRWCNQLSP VQHRPF
Sbjct: 5   HDRVKGSWSPQEDATLLKLVNEHGARNWSVISAGISGRSGKSCRLRWCNQLSPEVQHRPF 64

Query: 68  TPAEDSIIIQAHAVHGNKWATIARSLPGRTDNAIKNHWNSTLRRKRMAELSSASSESNSV 127
           TPAED +II+AHA+HGNKWATI+R LPGRTDNAIKNHWNSTLRR+R  E SS+SS S   
Sbjct: 65  TPAEDKMIIKAHAIHGNKWATISRLLPGRTDNAIKNHWNSTLRRRRAVESSSSSSASPPA 124

Query: 128 MMKRPGFENNISSAESDSDSGGIKRQCLRVSQEHDSYNVEAGIVGPETFGGEKVEDEEKL 187
                 F+               K+QC+      +  N E  ++ P T         EK 
Sbjct: 125 KRHSSLFDT----------LHPFKKQCI------EKENEEERVLSPVTTSLSLFPPGEKS 168

Query: 188 KINKECDGDGDGGKIEKEKGEDRCTVDMEMEESCLFT-IMRRMIAEEVRNQFDGLR 242
           +  +E +   +  K ++E  +    V+ ++ +   F  +M+RMIAEEVRN  + LR
Sbjct: 169 EEEEEEEEQEEEEKEKEELFQVNVNVNQKVTDQNYFMQMMQRMIAEEVRNYMETLR 224

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|89058604|gb|ABD60281.1| R2R3-MYB transcription factor MYB7 [Pinus taeda]

 Score =  197 bits (501), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 84/104 (80%), Positives = 98/104 (94%)

Query: 9   DRIKGSWSPQEDATLIKLVEQHGPRNWSMISSGIPGRSGKSCRLRWCNQLSPTVQHRPFT 68
           DRIKG WSP+EDA+L +LV+++GPRNW++IS GIPGRSGKSCRLRWCNQLSP V+HRPFT
Sbjct: 13  DRIKGPWSPEEDASLQRLVQKYGPRNWTLISKGIPGRSGKSCRLRWCNQLSPQVEHRPFT 72

Query: 69  PAEDSIIIQAHAVHGNKWATIARSLPGRTDNAIKNHWNSTLRRK 112
           P+ED+ I+QAHA HGNKWATIAR+LPGRTDNAIKNHWNSTLRR+
Sbjct: 73  PSEDAAILQAHAQHGNKWATIARALPGRTDNAIKNHWNSTLRRR 116

Source: Pinus taeda

Species: Pinus taeda

Genus: Pinus

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|148907117|gb|ABR16702.1| unknown [Picea sitchensis]

 Score =  196 bits (499), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 87/108 (80%), Positives = 96/108 (88%)

Query: 9   DRIKGSWSPQEDATLIKLVEQHGPRNWSMISSGIPGRSGKSCRLRWCNQLSPTVQHRPFT 68
           +RIKG WSP+EDATL +LVE++GPRNWS IS GIPGRSGKSCRLRWCNQLSP V+HRPF+
Sbjct: 16  ERIKGPWSPEEDATLHRLVEKYGPRNWSQISRGIPGRSGKSCRLRWCNQLSPQVEHRPFS 75

Query: 69  PAEDSIIIQAHAVHGNKWATIARSLPGRTDNAIKNHWNSTLRRKRMAE 116
           P ED+ IIQAHA HGNKWATIAR LPGRTDNAIKNHWNSTLRR+   E
Sbjct: 76  PHEDATIIQAHARHGNKWATIARLLPGRTDNAIKNHWNSTLRRRYHGE 123

Source: Picea sitchensis

Species: Picea sitchensis

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147744718|gb|ABQ51225.1| R2R3-MYB transcription factor MYB9 [Picea glauca]

 Score =  196 bits (499), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 87/108 (80%), Positives = 96/108 (88%)

Query: 9   DRIKGSWSPQEDATLIKLVEQHGPRNWSMISSGIPGRSGKSCRLRWCNQLSPTVQHRPFT 68
           +RIKG WSP+EDATL +LVE++GPRNWS IS GIPGRSGKSCRLRWCNQLSP V+HRPF+
Sbjct: 16  ERIKGPWSPEEDATLHRLVEKYGPRNWSQISRGIPGRSGKSCRLRWCNQLSPQVEHRPFS 75

Query: 69  PAEDSIIIQAHAVHGNKWATIARSLPGRTDNAIKNHWNSTLRRKRMAE 116
           P ED+ IIQAHA HGNKWATIAR LPGRTDNAIKNHWNSTLRR+   E
Sbjct: 76  PHEDATIIQAHARHGNKWATIARLLPGRTDNAIKNHWNSTLRRRYHGE 123

Source: Picea glauca

Species: Picea glauca

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|145839463|gb|ABD60288.2| R2R3-MYB transcription factor MYB9 [Picea glauca]

 Score =  194 bits (493), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 87/108 (80%), Positives = 96/108 (88%)

Query: 9   DRIKGSWSPQEDATLIKLVEQHGPRNWSMISSGIPGRSGKSCRLRWCNQLSPTVQHRPFT 68
           +RIKG WSP+EDATL +LVE++GPRNWS IS GIPGRSGKSCRLRWCNQLSP V+HRPF+
Sbjct: 4   ERIKGPWSPEEDATLHRLVEKYGPRNWSQISRGIPGRSGKSCRLRWCNQLSPQVEHRPFS 63

Query: 69  PAEDSIIIQAHAVHGNKWATIARSLPGRTDNAIKNHWNSTLRRKRMAE 116
           P ED+ IIQAHA HGNKWATIAR LPGRTDNAIKNHWNSTLRR+   E
Sbjct: 64  PHEDATIIQAHARHGNKWATIARLLPGRTDNAIKNHWNSTLRRRYHGE 111

Source: Picea glauca

Species: Picea glauca

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357492747|ref|XP_003616662.1| Myb transcription factor [Medicago truncatula] gi|355517997|gb|AES99620.1| Myb transcription factor [Medicago truncatula]

 Score =  193 bits (491), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 90/112 (80%), Positives = 100/112 (89%), Gaps = 4/112 (3%)

Query: 2   NSNSN----NNDRIKGSWSPQEDATLIKLVEQHGPRNWSMISSGIPGRSGKSCRLRWCNQ 57
           NSNSN    N D++KGSWS  ED TL+KLV+++G RNWS+IS+ IPGRSGKSCRLRWCNQ
Sbjct: 5   NSNSNGGDENGDKVKGSWSKTEDETLVKLVKENGARNWSVISNEIPGRSGKSCRLRWCNQ 64

Query: 58  LSPTVQHRPFTPAEDSIIIQAHAVHGNKWATIARSLPGRTDNAIKNHWNSTL 109
           LSPTVQH PFTPAEDSIII+AHAVHGNKWATI+R LPGRTDNAIKNHWNSTL
Sbjct: 65  LSPTVQHLPFTPAEDSIIIEAHAVHGNKWATISRLLPGRTDNAIKNHWNSTL 116

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	255
TAIR|locus:2058613	309	MYB70 "myb domain protein 70"	0.439	0.362	0.723	1.6e-43
TAIR|locus:2115060	320	MYB73 "myb domain protein 73"	0.439	0.35	0.705	1.7e-41
TAIR|locus:2083113	301	MYB77 "myb domain protein 77"	0.549	0.465	0.577	2e-40
TAIR|locus:2158212	305	MYBR1 "AT5G67300" [Arabidopsis	0.407	0.340	0.730	3.3e-40
TAIR|locus:2078961	399	MYB109 "myb domain protein 109	0.403	0.258	0.718	1.4e-39
TAIR|locus:2083489	393	MYB1 "myb domain protein 1" [A	0.576	0.374	0.523	6.1e-39
TAIR|locus:2061242	367	MYB25 "myb domain protein 25"	0.439	0.305	0.598	8e-37
UNIPROTKB|E1BZS0	654	MYBL2 "Myb-related protein B"	0.415	0.162	0.528	1.9e-31
UNIPROTKB|F1NG07	677	MYBL2 "Myb-related protein B"	0.415	0.156	0.528	2.3e-31
UNIPROTKB|Q03237	686	MYBL2 "Myb-related protein B"	0.415	0.154	0.528	2.5e-31

TAIR|locus:2058613 MYB70 "myb domain protein 70" [Arabidopsis thaliana (taxid:3702)]

 Score = 438 (159.2 bits), Expect = 1.6e-43, Sum P(2) = 1.6e-43
 Identities = 81/112 (72%), Positives = 88/112 (78%)

Query:     1 TNSNSNNNDRIKGSWSPQEDATLIKLVEQHGPRNWSMISSGIPGRSGKSCRLRWCNQLSP 60
             + S     DRIKG WSP+ED  L  LV++HGPRNWS+IS  IPGRSGKSCRLRWCNQLSP
Sbjct:     2 SGSTRKEMDRIKGPWSPEEDDLLQSLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSP 61

Query:    61 TVQHRPFTPAEDSIIIQAHAVHGNKWATIARSLPGRTDNAIKNHWNSTLRRK 112
              V+HR FT  ED  II AHA  GNKWATIAR L GRTDNAIKNHWNSTL+RK
Sbjct:    62 EVEHRGFTAEEDDTIILAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRK 113

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0009612 "response to mechanical stimulus" evidence=RCA

GO:0019722 "calcium-mediated signaling" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

TAIR|locus:2115060 MYB73 "myb domain protein 73" [Arabidopsis thaliana (taxid:3702)]

 Score = 440 (159.9 bits), Expect = 1.7e-41, P = 1.7e-41
 Identities = 79/112 (70%), Positives = 91/112 (81%)

Query:     1 TNSNSNNNDRIKGSWSPQEDATLIKLVEQHGPRNWSMISSGIPGRSGKSCRLRWCNQLSP 60
             +N    N +RIKG WSP+ED  L +LV++HGPRNWS+IS  IPGRSGKSCRLRWCNQLSP
Sbjct:     2 SNPTRKNMERIKGPWSPEEDDLLQRLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSP 61

Query:    61 TVQHRPFTPAEDSIIIQAHAVHGNKWATIARSLPGRTDNAIKNHWNSTLRRK 112
              V+HR F+  ED  II+AHA  GNKWATI+R L GRTDNAIKNHWNSTL+RK
Sbjct:    62 EVEHRAFSQEEDETIIRAHARFGNKWATISRLLNGRTDNAIKNHWNSTLKRK 113

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009723 "response to ethylene stimulus" evidence=IEP

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0010200 "response to chitin" evidence=IEP

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

TAIR|locus:2083113 MYB77 "myb domain protein 77" [Arabidopsis thaliana (taxid:3702)]

 Score = 430 (156.4 bits), Expect = 2.0e-40, P = 2.0e-40
 Identities = 82/142 (57%), Positives = 97/142 (68%)

Query:     9 DRIKGSWSPQEDATLIKLVEQHGPRNWSMISSGIPGRSGKSCRLRWCNQLSPTVQHRPFT 68
             DR+KG WS +ED  L ++VE++GPRNWS IS  IPGRSGKSCRLRWCNQLSP V+HRPF+
Sbjct:     3 DRVKGPWSQEEDEQLRRMVEKYGPRNWSAISKSIPGRSGKSCRLRWCNQLSPEVEHRPFS 62

Query:    69 PAEDSIIIQAHAVHGNKWATIARSLPGRTDNAIKNHWNSTLRRKRMXXXXXXXXXXXXVM 128
             P ED  I+ A A  GNKWATIAR L GRTDNA+KNHWNSTL+RK                
Sbjct:    63 PEEDETIVTARAQFGNKWATIARLLNGRTDNAVKNHWNSTLKRKCSGGVAVTTVTETEED 122

Query:   129 MKRPGFENNIS--SAESDSDSG 148
               RP    ++S  SA +  D+G
Sbjct:   123 QDRPKKRRSVSFDSAFAPVDTG 144

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009723 "response to ethylene stimulus" evidence=IEP

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0005515 "protein binding" evidence=IPI

GO:0048527 "lateral root development" evidence=IMP

GO:0010200 "response to chitin" evidence=IEP

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

TAIR|locus:2158212 MYBR1 "AT5G67300" [Arabidopsis thaliana (taxid:3702)]

 Score = 428 (155.7 bits), Expect = 3.3e-40, P = 3.3e-40
 Identities = 76/104 (73%), Positives = 87/104 (83%)

Query:     9 DRIKGSWSPQEDATLIKLVEQHGPRNWSMISSGIPGRSGKSCRLRWCNQLSPTVQHRPFT 68
             DRIKG WSP+ED  L +LV ++GPRNW++IS  IPGRSGKSCRLRWCNQLSP V+HRPF+
Sbjct:     3 DRIKGPWSPEEDEQLRRLVVKYGPRNWTVISKSIPGRSGKSCRLRWCNQLSPQVEHRPFS 62

Query:    69 PAEDSIIIQAHAVHGNKWATIARSLPGRTDNAIKNHWNSTLRRK 112
               ED  I +AHA  GNKWATIAR L GRTDNA+KNHWNSTL+RK
Sbjct:    63 AEEDETIARAHAQFGNKWATIARLLNGRTDNAVKNHWNSTLKRK 106

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IDA

GO:0009651 "response to salt stress" evidence=IEP;IMP

GO:0009723 "response to ethylene stimulus" evidence=IEP

GO:0009733 "response to auxin stimulus" evidence=IEP

GO:0009737 "response to abscisic acid stimulus" evidence=IEP;IMP

GO:0009739 "response to gibberellin stimulus" evidence=IEP

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0010200 "response to chitin" evidence=IEP

GO:0009414 "response to water deprivation" evidence=IEP

GO:0042742 "defense response to bacterium" evidence=IMP

GO:0050832 "defense response to fungus" evidence=IEP

GO:2000022 "regulation of jasmonic acid mediated signaling pathway" evidence=IMP

GO:2000031 "regulation of salicylic acid mediated signaling pathway" evidence=IMP

TAIR|locus:2078961 MYB109 "myb domain protein 109" [Arabidopsis thaliana (taxid:3702)]

 Score = 422 (153.6 bits), Expect = 1.4e-39, P = 1.4e-39
 Identities = 74/103 (71%), Positives = 86/103 (83%)

Query:    10 RIKGSWSPQEDATLIKLVEQHGPRNWSMISSGIPGRSGKSCRLRWCNQLSPTVQHRPFTP 69
             ++KG WS +EDA L KLV + GPRNWS+I+ GIPGRSGKSCRLRWCNQL P ++ +PF+ 
Sbjct:    54 KVKGPWSTEEDAVLTKLVRKLGPRNWSLIARGIPGRSGKSCRLRWCNQLDPCLKRKPFSD 113

Query:    70 AEDSIIIQAHAVHGNKWATIARSLPGRTDNAIKNHWNSTLRRK 112
              ED +II AHAVHGNKWA IA+ L GRTDNAIKNHWNSTLRRK
Sbjct:   114 EEDRMIISAHAVHGNKWAVIAKLLTGRTDNAIKNHWNSTLRRK 156

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0005737 "cytoplasm" evidence=IDA

GO:0009651 "response to salt stress" evidence=IEP;RCA

GO:0009723 "response to ethylene stimulus" evidence=IEP

GO:0009733 "response to auxin stimulus" evidence=IEP;RCA

GO:0009737 "response to abscisic acid stimulus" evidence=IEP;RCA

GO:0009739 "response to gibberellin stimulus" evidence=IEP

GO:0009751 "response to salicylic acid stimulus" evidence=IEP;RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0000303 "response to superoxide" evidence=RCA

GO:0009743 "response to carbohydrate stimulus" evidence=RCA

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA

GO:0010090 "trichome morphogenesis" evidence=RCA

TAIR|locus:2083489 MYB1 "myb domain protein 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 416 (151.5 bits), Expect = 6.1e-39, P = 6.1e-39
 Identities = 78/149 (52%), Positives = 97/149 (65%)

Query:     3 SNSNNNDRIKGSWSPQEDATLIKLVEQHGPRNWSMISSGIPGRSGKSCRLRWCNQLSPTV 62
             S     DR+KG WS +ED  L +LV++ G RNWS I+  IPGRSGKSCRLRWCNQL+P +
Sbjct:    46 SGRGRRDRVKGPWSKEEDDVLSELVKRLGARNWSFIARSIPGRSGKSCRLRWCNQLNPNL 105

Query:    63 QHRPFTPAEDSIIIQAHAVHGNKWATIARSLPGRTDNAIKNHWNSTLRRKRMXXXXXXXX 122
                 FT  ED  II AHA+HGNKWA IA+ LPGRTDNAIKNHWNS LRR+ +        
Sbjct:   106 IRNSFTEVEDQAIIAAHAIHGNKWAVIAKLLPGRTDNAIKNHWNSALRRRFIDFEKAKNI 165

Query:   123 XXXXVMMKRPGFENN--ISSAESDSDSGG 149
                 +++   GF+    ++S+E    SGG
Sbjct:   166 GTGSLVVDDSGFDRTTTVASSEETLSSGG 194

GO:0003677 "DNA binding" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

TAIR|locus:2061242 MYB25 "myb domain protein 25" [Arabidopsis thaliana (taxid:3702)]

 Score = 396 (144.5 bits), Expect = 8.0e-37, P = 8.0e-37
 Identities = 67/112 (59%), Positives = 87/112 (77%)

Query:     1 TNSNSNNNDRIKGSWSPQEDATLIKLVEQHGPRNWSMISSGIPGRSGKSCRLRWCNQLSP 60
             +++N     ++KG W P++D  L +LV+  GPRNW++IS GIPGRSGKSCRLRWCNQL P
Sbjct:    39 SDANGGGKSKVKGPWLPEQDEALTRLVKMCGPRNWNLISRGIPGRSGKSCRLRWCNQLDP 98

Query:    61 TVQHRPFTPAEDSIIIQAHAVHGNKWATIARSLPGRTDNAIKNHWNSTLRRK 112
              ++ +PF+  E+ +I+ A AV GNKW+ IA+ LPGRTDNAIKNHWNS LRRK
Sbjct:    99 ILKRKPFSDEEEHMIMSAQAVLGNKWSVIAKLLPGRTDNAIKNHWNSNLRRK 150

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0009555 "pollen development" evidence=IMP

GO:0010090 "trichome morphogenesis" evidence=RCA

UNIPROTKB|E1BZS0 MYBL2 "Myb-related protein B" [Gallus gallus (taxid:9031)]

 Score = 326 (119.8 bits), Expect = 1.9e-31, Sum P(2) = 1.9e-31
 Identities = 56/106 (52%), Positives = 78/106 (73%)

Query:     7 NNDRIKGSWSPQEDATLIKLVEQHGPRNWSMISSGIPGRSGKSCRLRWCNQLSPTVQHRP 66
             N D +KG W+ +ED  +I+LV+++G + W++I+  + GR GK CR RW N L+P V+   
Sbjct:    78 NPDLVKGPWTKEEDQKVIELVKKYGTKQWTLIAKHLKGRLGKQCRERWHNHLNPEVKKSS 137

Query:    67 FTPAEDSIIIQAHAVHGNKWATIARSLPGRTDNAIKNHWNSTLRRK 112
             +T  ED II +AH V GN+WA IA+ LPGRTDNA+KNHWNST++RK
Sbjct:   138 WTEEEDRIIFEAHKVLGNRWAEIAKLLPGRTDNAVKNHWNSTIKRK 183

GO:0003677 "DNA binding" evidence=IEA

GO:0003682 "chromatin binding" evidence=IEA

UNIPROTKB|F1NG07 MYBL2 "Myb-related protein B" [Gallus gallus (taxid:9031)]

 Score = 326 (119.8 bits), Expect = 2.3e-31, Sum P(2) = 2.3e-31
 Identities = 56/106 (52%), Positives = 78/106 (73%)

Query:     7 NNDRIKGSWSPQEDATLIKLVEQHGPRNWSMISSGIPGRSGKSCRLRWCNQLSPTVQHRP 66
             N D +KG W+ +ED  +I+LV+++G + W++I+  + GR GK CR RW N L+P V+   
Sbjct:    78 NPDLVKGPWTKEEDQKVIELVKKYGTKQWTLIAKHLKGRLGKQCRERWHNHLNPEVKKSS 137

Query:    67 FTPAEDSIIIQAHAVHGNKWATIARSLPGRTDNAIKNHWNSTLRRK 112
             +T  ED II +AH V GN+WA IA+ LPGRTDNA+KNHWNST++RK
Sbjct:   138 WTEEEDRIIFEAHKVLGNRWAEIAKLLPGRTDNAVKNHWNSTIKRK 183

GO:0003677 "DNA binding" evidence=IEA

GO:0003682 "chromatin binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0031523 "Myb complex" evidence=IEA

GO:0090307 "spindle assembly involved in mitosis" evidence=IEA

UNIPROTKB|Q03237 MYBL2 "Myb-related protein B" [Gallus gallus (taxid:9031)]

 Score = 326 (119.8 bits), Expect = 2.5e-31, Sum P(2) = 2.5e-31
 Identities = 56/106 (52%), Positives = 78/106 (73%)

Query:     7 NNDRIKGSWSPQEDATLIKLVEQHGPRNWSMISSGIPGRSGKSCRLRWCNQLSPTVQHRP 66
             N D +KG W+ +ED  +I+LV+++G + W++I+  + GR GK CR RW N L+P V+   
Sbjct:    78 NPDLVKGPWTKEEDQKVIELVKKYGTKQWTLIAKHLKGRLGKQCRERWHNHLNPEVKKSS 137

Query:    67 FTPAEDSIIIQAHAVHGNKWATIARSLPGRTDNAIKNHWNSTLRRK 112
             +T  ED II +AH V GN+WA IA+ LPGRTDNA+KNHWNST++RK
Sbjct:   138 WTEEEDRIIFEAHKVLGNRWAEIAKLLPGRTDNAVKNHWNSTIKRK 183

GO:0003682 "chromatin binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	255
PLN03091	459	PLN03091, PLN03091, hypothetical protein; Provisio	5e-27
PLN03212	249	PLN03212, PLN03212, Transcription repressor MYB5;	9e-24
pfam00249	47	pfam00249, Myb_DNA-binding, Myb-like DNA-binding d	5e-17
COG5147	512	COG5147, REB1, Myb superfamily proteins, including	5e-17
smart00717	49	smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIII	3e-14
pfam00249	47	pfam00249, Myb_DNA-binding, Myb-like DNA-binding d	1e-13
cd00167	45	cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-	3e-13
pfam13921	59	pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding do	7e-13
smart00717	49	smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIII	1e-10
cd00167	45	cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-	1e-10
pfam13921	59	pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding do	1e-08
cd11660	50	cd11660, SANT_TRF, Telomere repeat binding factor-	4e-04

>gnl|CDD|215570 PLN03091, PLN03091, hypothetical protein; Provisional

 Score =  108 bits (270), Expect = 5e-27
 Identities = 51/103 (49%), Positives = 71/103 (68%), Gaps = 3/103 (2%)

Query: 12  KGSWSPQEDATLIKLVEQHGPRNWSMI--SSGIPGRSGKSCRLRWCNQLSPTVQHRPFTP 69
           KG WSP+ED  L++ + ++G   WS +   +G+  R GKSCRLRW N L P ++   F+ 
Sbjct: 14  KGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQ-RCGKSCRLRWINYLRPDLKRGTFSQ 72

Query: 70  AEDSIIIQAHAVHGNKWATIARSLPGRTDNAIKNHWNSTLRRK 112
            E+++II+ HAV GN+W+ IA  LPGRTDN IKN WNS L++K
Sbjct: 73  QEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKK 115

Length = 459

>gnl|CDD|178751 PLN03212, PLN03212, Transcription repressor MYB5; Provisional

 Score = 95.9 bits (238), Expect = 9e-24
 Identities = 63/181 (34%), Positives = 91/181 (50%), Gaps = 23/181 (12%)

Query: 12  KGSWSPQEDATLIKLVEQHGPRNW-SMISSGIPGRSGKSCRLRWCNQLSPTVQHRPFTPA 70
           +G W+ +ED  L+  +++ G   W S+       R GKSCRLRW N L P+V+    T  
Sbjct: 25  RGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYLRPSVKRGGITSD 84

Query: 71  EDSIIIQAHAVHGNKWATIARSLPGRTDNAIKNHWNSTLRRKRMAELSSASSESNSVMMK 130
           E+ +I++ H + GN+W+ IA  +PGRTDN IKN+WN+ LR+K + +     +        
Sbjct: 85  EEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLRKKLLRQGIDPQTH------- 137

Query: 131 RPGFENNISSAESDSDSGGIKRQCLRVSQEH--------------DSYNVEAGIVGPETF 176
           +P   NNI   E +  SGG K     +S  H              +S NV  G  G E F
Sbjct: 138 KPLDANNIHKPEEEV-SGGQKYPIEPISSSHTDDTTVNGGDGDSKNSINVFGGEHGYEDF 196

Query: 177 G 177
           G
Sbjct: 197 G 197

Length = 249

>gnl|CDD|215818 pfam00249, Myb_DNA-binding, Myb-like DNA-binding domain

 Score = 72.2 bits (178), Expect = 5e-17
 Identities = 22/47 (46%), Positives = 32/47 (68%)

Query: 12 KGSWSPQEDATLIKLVEQHGPRNWSMISSGIPGRSGKSCRLRWCNQL 58
          +G W+P+ED  LI+ V++HG  NWS I+  +PGR+   C+ RW N L
Sbjct: 1  RGPWTPEEDELLIEAVKKHGNGNWSKIAKHLPGRTDNQCKNRWNNYL 47

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 47

>gnl|CDD|227476 COG5147, REB1, Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]

 Score = 79.4 bits (196), Expect = 5e-17
 Identities = 36/121 (29%), Positives = 55/121 (45%), Gaps = 4/121 (3%)

Query: 9   DRIKGSWSPQEDATLIKLVEQHGPRNWSMISSGIPGRSGKSCRLRWCNQLSPTVQHRPFT 68
            R  GSW   ED  L  LV++ GP NWS ++S +   +GK    RW N L+P ++ + ++
Sbjct: 17  KRKGGSWKRTEDEDLKALVKKLGPNNWSKVASLLISSTGKQSSNRWNNHLNPQLKKKNWS 76

Query: 69  PAEDSIIIQAHAVHGNKWATIARSLPGRTDNAIKNHWNSTLRRKRMAELSSASSESNSVM 128
             ED  +I      G +W+TIA     RT       + +TL        S+  S+     
Sbjct: 77  EEEDEQLIDLDKELGTQWSTIADYKDRRTAQQCVERYVNTLED----LSSTHDSKLQRRN 132

Query: 129 M 129
            
Sbjct: 133 E 133

Length = 512

>gnl|CDD|197842 smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

 Score = 64.9 bits (159), Expect = 3e-14
 Identities = 23/49 (46%), Positives = 33/49 (67%)

Query: 12 KGSWSPQEDATLIKLVEQHGPRNWSMISSGIPGRSGKSCRLRWCNQLSP 60
          KG W+ +ED  LI+LV+++G  NW  I+  +PGR+ + CR RW N L P
Sbjct: 1  KGEWTEEEDELLIELVKKYGKNNWEKIAKELPGRTAEQCRERWRNLLKP 49

Length = 49

>gnl|CDD|215818 pfam00249, Myb_DNA-binding, Myb-like DNA-binding domain

 Score = 63.3 bits (155), Expect = 1e-13
 Identities = 25/45 (55%), Positives = 32/45 (71%), Gaps = 1/45 (2%)

Query: 66  PFTPAEDSIIIQAHAVHGNK-WATIARSLPGRTDNAIKNHWNSTL 109
           P+TP ED ++I+A   HGN  W+ IA+ LPGRTDN  KN WN+ L
Sbjct: 3   PWTPEEDELLIEAVKKHGNGNWSKIAKHLPGRTDNQCKNRWNNYL 47

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 47

>gnl|CDD|238096 cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

 Score = 62.2 bits (152), Expect = 3e-13
 Identities = 18/43 (41%), Positives = 28/43 (65%)

Query: 14 SWSPQEDATLIKLVEQHGPRNWSMISSGIPGRSGKSCRLRWCN 56
           W+ +ED  L++ V+++G  NW  I+  +PGR+ K CR RW N
Sbjct: 1  PWTEEEDELLLEAVKKYGKNNWEKIAKELPGRTPKQCRERWRN 43

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA. Length = 45

>gnl|CDD|206092 pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding domain

 Score = 61.6 bits (150), Expect = 7e-13
 Identities = 23/61 (37%), Positives = 36/61 (59%), Gaps = 2/61 (3%)

Query: 15 WSPQEDATLIKLVEQHGPRNWSMISSGIPGRSGKSCRLRWCNQLSPTVQHRPFTPAEDSI 74
          W+ +ED  L+KLVE++G  +W  I+  + GR+  +CR RW  +L P     P+T  ED  
Sbjct: 1  WTEEEDEKLLKLVEKYG-NDWKQIAEEL-GRTPSACRDRWRRKLRPKRSRGPWTKEEDQR 58

Query: 75 I 75
          +
Sbjct: 59 L 59

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 59

>gnl|CDD|197842 smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

 Score = 55.3 bits (134), Expect = 1e-10
 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 1/48 (2%)

Query: 65  RPFTPAEDSIIIQAHAVHG-NKWATIARSLPGRTDNAIKNHWNSTLRR 111
             +T  ED ++I+    +G N W  IA+ LPGRT    +  W + L+ 
Sbjct: 2   GEWTEEEDELLIELVKKYGKNNWEKIAKELPGRTAEQCRERWRNLLKP 49

Length = 49

>gnl|CDD|238096 cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

 Score = 54.9 bits (133), Expect = 1e-10
 Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 1/45 (2%)

Query: 66  PFTPAEDSIIIQAHAVHG-NKWATIARSLPGRTDNAIKNHWNSTL 109
           P+T  ED ++++A   +G N W  IA+ LPGRT    +  W + L
Sbjct: 1   PWTEEEDELLLEAVKKYGKNNWEKIAKELPGRTPKQCRERWRNLL 45

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA. Length = 45

>gnl|CDD|206092 pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding domain

 Score = 49.6 bits (119), Expect = 1e-08
 Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 1/47 (2%)

Query: 67  FTPAEDSIIIQAHAVHGNKWATIARSLPGRTDNAIKNHWNSTLRRKR 113
           +T  ED  +++    +GN W  IA  L GRT +A ++ W   LR KR
Sbjct: 1   WTEEEDEKLLKLVEKYGNDWKQIAEEL-GRTPSACRDRWRRKLRPKR 46

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 59

>gnl|CDD|212558 cd11660, SANT_TRF, Telomere repeat binding factor-like DNA-binding domains of the SANT/myb-like family

 Score = 37.2 bits (87), Expect = 4e-04
 Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 3/45 (6%)

Query: 15 WSPQEDATLIKLVEQHGPRNWSMI---SSGIPGRSGKSCRLRWCN 56
          W+ +ED  L++ VE++G  NW+ I      +  R+    + +W N
Sbjct: 3  WTDEEDEALVEGVEKYGVGNWAKILKDYFFVNNRTSVDLKDKWRN 47

Human telomere repeat binding factors, TRF1 and TRF2, function as part of the 6 component shelterin complex. TRF2 binds DNA and recruits RAP1 (via binding to the RAP1 protein c-terminal (RCT)) and TIN2 in the protection of telomeres from DNA repair machinery. Metazoan shelterin consists of 3 DNA binding proteins (TRF2, TRF1, and POT1) and 3 recruited proteins that bind to one or more of these DNA-binding proteins (RAP1, TIN2, TPP1). Schizosaccharomyces pombe TAZ1 is an orthlog and binds RAP1. Human TRF1 and TRF2 bind double-stranded DNA. hTRF2 consists of a basic N-terminus, a TRF homology domain, the RAP1 binding motif (RBM), the TIN2 binding motif (TBM) and a myb-like DNA binding domain, SANT, named after 'SWI3, ADA2, N-CoR and TFIIIB', several factors that share this domain. Tandem copies of the domain bind telomeric DNA tandem repeats as part of the capping complex. The single myb-like domain of TRF-type proteins is similar to the tandem myb_like domains found in yeast RAP1. Length = 50

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	255
KOG0048	238	consensus Transcription factor, Myb superfamily [T	99.97
PLN03212	249	Transcription repressor MYB5; Provisional	99.97
PLN03091	459	hypothetical protein; Provisional	99.97
KOG0049	939	consensus Transcription factor, Myb superfamily [T	99.79
KOG0049	939	consensus Transcription factor, Myb superfamily [T	99.69
PF13921	60	Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB:	99.66
KOG0050	617	consensus mRNA splicing protein CDC5 (Myb superfam	99.65
COG5147	512	REB1 Myb superfamily proteins, including transcrip	99.57
PF00249	48	Myb_DNA-binding: Myb-like DNA-binding domain; Inte	99.45
KOG0051	607	consensus RNA polymerase I termination factor, Myb	99.41
PF00249	48	Myb_DNA-binding: Myb-like DNA-binding domain; Inte	99.39
PLN03212	249	Transcription repressor MYB5; Provisional	99.23
smart00717	49	SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bindi	99.2
PF13921	60	Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB:	99.19
smart00717	49	SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bindi	99.17
PLN03091	459	hypothetical protein; Provisional	99.12
cd00167	45	SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding do	99.08
cd00167	45	SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding do	99.02
KOG0048	238	consensus Transcription factor, Myb superfamily [T	99.01
KOG0051	607	consensus RNA polymerase I termination factor, Myb	98.9
COG5147	512	REB1 Myb superfamily proteins, including transcrip	98.36
TIGR01557	57	myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF c	97.94
KOG0457	438	consensus Histone acetyltransferase complex SAGA/A	97.86
PF13325	199	MCRS_N: N-terminal region of micro-spherule protei	97.74
KOG0457	438	consensus Histone acetyltransferase complex SAGA/A	97.63
TIGR01557	57	myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF c	97.61
KOG0050	617	consensus mRNA splicing protein CDC5 (Myb superfam	97.28
COG5259	531	RSC8 RSC chromatin remodeling complex subunit RSC8	97.2
KOG1279	506	consensus Chromatin remodeling factor subunit and	97.1
COG5259	531	RSC8 RSC chromatin remodeling complex subunit RSC8	97.06
KOG1279	506	consensus Chromatin remodeling factor subunit and	96.93
TIGR02894	161	DNA_bind_RsfA transcription factor, RsfA family. I	96.85
PF13837	90	Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain;	96.82
PF08914	65	Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR0150	96.56
TIGR02894	161	DNA_bind_RsfA transcription factor, RsfA family. I	96.37
PF08914	65	Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR0150	95.91
COG5114	432	Histone acetyltransferase complex SAGA/ADA, subuni	95.83
PF13837	90	Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain;	95.8
COG5114	432	Histone acetyltransferase complex SAGA/ADA, subuni	95.69
PRK13923	170	putative spore coat protein regulator protein YlbO	95.63
PF13873	78	Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain	95.51
PLN03142	1033	Probable chromatin-remodeling complex ATPase chain	95.19
PF13873	78	Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain	95.0
PRK13923	170	putative spore coat protein regulator protein YlbO	94.16
KOG2656	445	consensus DNA methyltransferase 1-associated prote	94.01
COG5118	507	BDP1 Transcription initiation factor TFIIIB, Bdp1	91.96
KOG4282	345	consensus Transcription factor GT-2 and related pr	91.76
COG5118	507	BDP1 Transcription initiation factor TFIIIB, Bdp1	91.55
PF09111	118	SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain	91.21
PF12776	96	Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain;	88.96
PF09111	118	SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain	87.5
KOG4167	907	consensus Predicted DNA-binding protein, contains	85.48
PF11626	87	Rap1_C: TRF2-interacting telomeric protein/Rap1 -	84.74
PF08281	54	Sigma70_r4_2: Sigma-70, region 4; InterPro: IPR013	84.04
KOG1194	534	consensus Predicted DNA-binding protein, contains	82.31

>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]

Probab=99.97  E-value=2.5e-32  Score=243.55  Aligned_cols=110  Identities=42%  Similarity=0.796  Sum_probs=104.9

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCCCChhhhccCCC-CCCcccccccccccCCCCccCCCCChhhHHHHHHHHHHcCCch
Q 046570            8 NDRIKGSWSPQEDATLIKLVEQHGPRNWSMISSGIP-GRSGKSCRLRWCNQLSPTVQHRPFTPAEDSIIIQAHAVHGNKW   86 (255)
Q Consensus         8 ~~~~kg~WT~eED~~L~~lv~~~G~~~W~~IA~~lp-gRt~~qCr~Rw~~~L~p~l~k~~WT~eED~~Ll~~v~~~G~~W   86 (255)
                      +...||+||+|||.+|+.+|.+||+++|..||+.++ +|++++||.||.|||+|.++++.||+|||.+|++++..||++|
T Consensus         5 ~~~~kGpWt~EED~~L~~~V~~~G~~~W~~i~k~~gl~R~GKSCRlRW~NyLrP~ikrg~fT~eEe~~Ii~lH~~~GNrW   84 (238)
T KOG0048|consen    5 PELVKGPWTQEEDLTQIRSIKSFGKHNGTALPKLAGLRRCGKSCRLRWTNYLRPDLKRGNFSDEEEDLIIKLHALLGNRW   84 (238)
T ss_pred             ccccCCCCChHHHHHHHHHHHHhCCCCcchhhhhcCCCccchHHHHHhhcccCCCccCCCCCHHHHHHHHHHHHHHCcHH
Confidence            345579999999999999999999999999999998 9999999999999999999999999999999999999999999


Q ss_pred             hhhhccCCCCCHHHHHHHHHHHHHhHHHhhh
Q 046570           87 ATIARSLPGRTDNAIKNHWNSTLRRKRMAEL  117 (255)
Q Consensus        87 ~~IA~~~pgRT~~qcknRw~~llr~k~~~~~  117 (255)
                      +.||++|||||++.|||+|+..+++++....
T Consensus        85 s~IA~~LPGRTDNeIKN~Wnt~lkkkl~~~~  115 (238)
T KOG0048|consen   85 SLIAGRLPGRTDNEVKNHWNTHLKKKLLKMG  115 (238)
T ss_pred             HHHHhhCCCcCHHHHHHHHHHHHHHHHHHcC
Confidence            9999999999999999999999999877644

>PLN03212 Transcription repressor MYB5; Provisional

Probab=99.97  E-value=6.6e-32  Score=239.02  Aligned_cols=110  Identities=39%  Similarity=0.800  Sum_probs=105.1

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCChhhhccCC-CCCCcccccccccccCCCCccCCCCChhhHHHHHHHHHHcCCc
Q 046570            7 NNDRIKGSWSPQEDATLIKLVEQHGPRNWSMISSGI-PGRSGKSCRLRWCNQLSPTVQHRPFTPAEDSIIIQAHAVHGNK   85 (255)
Q Consensus         7 ~~~~~kg~WT~eED~~L~~lv~~~G~~~W~~IA~~l-pgRt~~qCr~Rw~~~L~p~l~k~~WT~eED~~Ll~~v~~~G~~   85 (255)
                      .+.+++++||+|||++|+++|++||..+|..||..+ ++|+++|||+||.++|+|.+++++||++||++|++++..||++
T Consensus        20 K~glKRg~WT~EEDe~L~~lV~kyG~~nW~~IAk~~g~gRT~KQCReRW~N~L~P~I~kgpWT~EED~lLlel~~~~GnK   99 (249)
T PLN03212         20 KMGMKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYLRPSVKRGGITSDEEDLILRLHRLLGNR   99 (249)
T ss_pred             cCCCcCCCCCHHHHHHHHHHHHHhCcccHHHHHHhhhcCCCcchHHHHHHHhhchhcccCCCChHHHHHHHHHHHhcccc
Confidence            367899999999999999999999998999999988 6999999999999999999999999999999999999999999


Q ss_pred             hhhhhccCCCCCHHHHHHHHHHHHHhHHHhh
Q 046570           86 WATIARSLPGRTDNAIKNHWNSTLRRKRMAE  116 (255)
Q Consensus        86 W~~IA~~~pgRT~~qcknRw~~llr~k~~~~  116 (255)
                      |..||++|||||+++|||||+.++++++...
T Consensus       100 Ws~IAk~LpGRTDnqIKNRWns~LrK~l~r~  130 (249)
T PLN03212        100 WSLIAGRIPGRTDNEIKNYWNTHLRKKLLRQ  130 (249)
T ss_pred             HHHHHhhcCCCCHHHHHHHHHHHHhHHHHhc
Confidence            9999999999999999999999999887653

>PLN03091 hypothetical protein; Provisional

Probab=99.97  E-value=4.4e-30  Score=242.29  Aligned_cols=111  Identities=45%  Similarity=0.834  Sum_probs=105.5

Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHhCCCChhhhccCC-CCCCcccccccccccCCCCccCCCCChhhHHHHHHHHHHcCC
Q 046570            6 NNNDRIKGSWSPQEDATLIKLVEQHGPRNWSMISSGI-PGRSGKSCRLRWCNQLSPTVQHRPFTPAEDSIIIQAHAVHGN   84 (255)
Q Consensus         6 l~~~~~kg~WT~eED~~L~~lv~~~G~~~W~~IA~~l-pgRt~~qCr~Rw~~~L~p~l~k~~WT~eED~~Ll~~v~~~G~   84 (255)
                      ....++||+||++||++|+++|.+||..+|..||+.+ ++|+++|||+||.++|+|.+++++||++||++|++++++||+
T Consensus         8 ~KqklrKg~WTpEEDe~L~~~V~kyG~~nWs~IAk~~g~gRT~KQCRERW~NyLdP~IkKgpWT~EED~lLLeL~k~~Gn   87 (459)
T PLN03091          8 YKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQQEENLIIELHAVLGN   87 (459)
T ss_pred             cCCCCcCCCCCHHHHHHHHHHHHHhCcCCHHHHhhhhccCcCcchHhHHHHhccCCcccCCCCCHHHHHHHHHHHHHhCc
Confidence            4568899999999999999999999999999999988 599999999999999999999999999999999999999999


Q ss_pred             chhhhhccCCCCCHHHHHHHHHHHHHhHHHhh
Q 046570           85 KWATIARSLPGRTDNAIKNHWNSTLRRKRMAE  116 (255)
Q Consensus        85 ~W~~IA~~~pgRT~~qcknRw~~llr~k~~~~  116 (255)
                      +|.+||++|||||+++||+||+.++++++...
T Consensus        88 KWskIAk~LPGRTDnqIKNRWnslLKKklr~~  119 (459)
T PLN03091         88 RWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQR  119 (459)
T ss_pred             chHHHHHhcCCCCHHHHHHHHHHHHHHHHHHc
Confidence            99999999999999999999999999886643

>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]

Probab=99.79  E-value=1.1e-19  Score=177.53  Aligned_cols=106  Identities=28%  Similarity=0.499  Sum_probs=98.9

Q ss_pred             CCCCCCCCCCCCCCCCHHHHHHHHHHHHHhCCCChhhhccCCCCCCcccccccccccCCCCccCCCCChhhHHHHHHHHH
Q 046570            1 TNSNSNNNDRIKGSWSPQEDATLIKLVEQHGPRNWSMISSGIPGRSGKSCRLRWCNQLSPTVQHRPFTPAEDSIIIQAHA   80 (255)
Q Consensus         1 ~~sn~l~~~~~kg~WT~eED~~L~~lv~~~G~~~W~~IA~~lpgRt~~qCr~Rw~~~L~p~l~k~~WT~eED~~Ll~~v~   80 (255)
                      +++-+|+|.+++|+||++||.+|..+|.+||..+|.+|-..+|||+..|||+||.|.|+...+++.||-.||+.|+.+|.
T Consensus       349 R~~~~LdPsikhg~wt~~ED~~L~~AV~~Yg~kdw~k~R~~vPnRSdsQcR~RY~nvL~~s~K~~rW~l~edeqL~~~V~  428 (939)
T KOG0049|consen  349 RFSHTLDPSVKHGRWTDQEDVLLVCAVSRYGAKDWAKVRQAVPNRSDSQCRERYTNVLNRSAKVERWTLVEDEQLLYAVK  428 (939)
T ss_pred             hheeccCccccCCCCCCHHHHHHHHHHHHhCccchhhHHHhcCCccHHHHHHHHHHHHHHhhccCceeecchHHHHHHHH
Confidence            45678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcC-CchhhhhccCCCCCHH---HHHHHHH
Q 046570           81 VHG-NKWATIARSLPGRTDN---AIKNHWN  106 (255)
Q Consensus        81 ~~G-~~W~~IA~~~pgRT~~---qcknRw~  106 (255)
                      +|| ++|.+||.++|.||..   .||.|+.
T Consensus       429 ~YG~g~WakcA~~Lp~~t~~q~~rrR~R~~  458 (939)
T KOG0049|consen  429 VYGKGNWAKCAMLLPKKTSRQLRRRRLRLI  458 (939)
T ss_pred             HHccchHHHHHHHccccchhHHHHHHHHHH
Confidence            999 7899999999999994   4555543

>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]

Probab=99.69  E-value=3.4e-17  Score=160.12  Aligned_cols=103  Identities=29%  Similarity=0.594  Sum_probs=95.9

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCC---CChhhhccCCCCCCcccccccccccCCCCccCCCCChhhHHHHHHHHHHcCCc-h
Q 046570           11 IKGSWSPQEDATLIKLVEQHGP---RNWSMISSGIPGRSGKSCRLRWCNQLSPTVQHRPFTPAEDSIIIQAHAVHGNK-W   86 (255)
Q Consensus        11 ~kg~WT~eED~~L~~lv~~~G~---~~W~~IA~~lpgRt~~qCr~Rw~~~L~p~l~k~~WT~eED~~Ll~~v~~~G~~-W   86 (255)
                      ....||+|||.+|+.+|.....   .+|.+|-.+||||+..|...||.+.|+|++++|+||++||.+|+.+|.+||.+ |
T Consensus       304 ~ekeWsEEed~kL~alV~~~~~nShI~w~kVV~Ympgr~~~qLI~R~~~~LdPsikhg~wt~~ED~~L~~AV~~Yg~kdw  383 (939)
T KOG0049|consen  304 SEKEWSEEEDTKLIALVKITSINSHIQWDKVVQYMPGRTRQQLITRFSHTLDPSVKHGRWTDQEDVLLVCAVSRYGAKDW  383 (939)
T ss_pred             HhhhcchhhhHHHHHHHHHhhccCccchHHHHHhcCCcchhhhhhhheeccCccccCCCCCCHHHHHHHHHHHHhCccch
Confidence            4578999999999999987743   36999999999999999999999999999999999999999999999999965 9


Q ss_pred             hhhhccCCCCCHHHHHHHHHHHHHhHH
Q 046570           87 ATIARSLPGRTDNAIKNHWNSTLRRKR  113 (255)
Q Consensus        87 ~~IA~~~pgRT~~qcknRw~~llr~k~  113 (255)
                      .+|-..||||++.|||.||.+.|.+..
T Consensus       384 ~k~R~~vPnRSdsQcR~RY~nvL~~s~  410 (939)
T KOG0049|consen  384 AKVRQAVPNRSDSQCRERYTNVLNRSA  410 (939)
T ss_pred             hhHHHhcCCccHHHHHHHHHHHHHHhh
Confidence            999999999999999999999987753

>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A

Probab=99.66  E-value=5.9e-17  Score=114.69  Aligned_cols=60  Identities=37%  Similarity=0.814  Sum_probs=55.0

Q ss_pred             CCHHHHHHHHHHHHHhCCCChhhhccCCCCCCcccccccccccCCCCccCCCCChhhHHHH
Q 046570           15 WSPQEDATLIKLVEQHGPRNWSMISSGIPGRSGKSCRLRWCNQLSPTVQHRPFTPAEDSII   75 (255)
Q Consensus        15 WT~eED~~L~~lv~~~G~~~W~~IA~~lpgRt~~qCr~Rw~~~L~p~l~k~~WT~eED~~L   75 (255)
                      ||++||.+|+.+|..|| .+|..||.+|+.||+.||+.||.++|.|.+++++||++||.+|
T Consensus         1 WT~eEd~~L~~~~~~~g-~~W~~Ia~~l~~Rt~~~~~~r~~~~l~~~~~~~~wt~eEd~~L   60 (60)
T PF13921_consen    1 WTKEEDELLLELVKKYG-NDWKKIAEHLGNRTPKQCRNRWRNHLRPKISRGPWTKEEDQRL   60 (60)
T ss_dssp             S-HHHHHHHHHHHHHHT-S-HHHHHHHSTTS-HHHHHHHHHHTTSTTSTSSSSSHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHC-cCHHHHHHHHCcCCHHHHHHHHHHHCcccccCCCcCHHHHhcC
Confidence            99999999999999999 6899999999779999999999999999999999999999987

...

>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]

Probab=99.65  E-value=8.5e-17  Score=154.15  Aligned_cols=145  Identities=22%  Similarity=0.378  Sum_probs=121.4

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCChhhhccCCCCCCcccccccccccCCCCccCCCCChhhHHHHHHHHHHcCCchhhh
Q 046570           10 RIKGSWSPQEDATLIKLVEQHGPRNWSMISSGIPGRSGKSCRLRWCNQLSPTVQHRPFTPAEDSIIIQAHAVHGNKWATI   89 (255)
Q Consensus        10 ~~kg~WT~eED~~L~~lv~~~G~~~W~~IA~~lpgRt~~qCr~Rw~~~L~p~l~k~~WT~eED~~Ll~~v~~~G~~W~~I   89 (255)
                      ++.|.|+.-||+.|..+|.+||.+.|++|+..++-.+++||+.||..+|+|.+++..|+.+||.+||.+.+.+...|..|
T Consensus         5 ~kggvwrntEdeilkaav~kyg~nqws~i~sll~~kt~rqC~~rw~e~ldp~i~~tews~eederlLhlakl~p~qwrtI   84 (617)
T KOG0050|consen    5 IKGGVWRNTEDEVLKAAVMKYGKNQWSRIASLLNRKTARQCKARWEEWLDPAIKKTEWSREEDERLLHLAKLEPTQWRTI   84 (617)
T ss_pred             EecceecccHHHHHHHHHHHcchHHHHHHHHHHhhcchhHHHHHHHHHhCHHHhhhhhhhhHHHHHHHHHHhcCCccchH
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hccCCCCCHHHHHHHHHHHHHhHHHhhhhcCCcCCCcccccCCCCCCCCCCCCCCCCCCCCccccccc
Q 046570           90 ARSLPGRTDNAIKNHWNSTLRRKRMAELSSASSESNSVMMKRPGFENNISSAESDSDSGGIKRQCLRV  157 (255)
Q Consensus        90 A~~~pgRT~~qcknRw~~llr~k~~~~~~~~~~~~~~~~~~~~~~~~~iss~~~ds~s~~~~~q~~~~  157 (255)
                      +..| ||+++||-.||..++-..........+-....  ...+.++++.......+++.++...|...
T Consensus        85 a~i~-gr~~~qc~eRy~~ll~~~~s~~~~~~~~~D~r--Lk~gE~ePn~e~~~aRpd~~dmdEde~eM  149 (617)
T KOG0050|consen   85 ADIM-GRTSQQCLERYNNLLDVYVSYHYHSEPYIDAK--LKEGEIEPNQETNPARPDGFDMDEDEGEM  149 (617)
T ss_pred             HHHh-hhhHHHHHHHHHHHHHHHHhhhcccccccccc--cCCCcCCCccccccccCCcccchHHHHHH
Confidence            9999 99999999999999987766554422221111  34455555555566677777766665553

>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]

Probab=99.57  E-value=2.1e-15  Score=146.63  Aligned_cols=107  Identities=32%  Similarity=0.560  Sum_probs=101.7

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCCCChhhhccCCCCCCcccccccccccCCCCccCCCCChhhHHHHHHHHHHcCCchh
Q 046570            8 NDRIKGSWSPQEDATLIKLVEQHGPRNWSMISSGIPGRSGKSCRLRWCNQLSPTVQHRPFTPAEDSIIIQAHAVHGNKWA   87 (255)
Q Consensus         8 ~~~~kg~WT~eED~~L~~lv~~~G~~~W~~IA~~lpgRt~~qCr~Rw~~~L~p~l~k~~WT~eED~~Ll~~v~~~G~~W~   87 (255)
                      -.++.|.|+..||+.|..+|..||+++|..||..+..+++.||+.||.++++|.+++..|+.+||..|+.+..++|+.|+
T Consensus        16 ~~~k~gsw~~~EDe~l~~~vk~l~~nnws~vas~~~~~~~kq~~~rw~~~lnp~lk~~~~~~eed~~li~l~~~~~~~ws   95 (512)
T COG5147          16 TKRKGGSWKRTEDEDLKALVKKLGPNNWSKVASLLISSTGKQSSNRWNNHLNPQLKKKNWSEEEDEQLIDLDKELGTQWS   95 (512)
T ss_pred             ceecCCCCCCcchhHHHHHHhhcccccHHHHHHHhcccccccccchhhhhhchhcccccccHHHHHHHHHHHHhcCchhh
Confidence            46788999999999999999999999999999999889999999999999999999999999999999999999999999


Q ss_pred             hhhccCCCCCHHHHHHHHHHHHHhHHH
Q 046570           88 TIARSLPGRTDNAIKNHWNSTLRRKRM  114 (255)
Q Consensus        88 ~IA~~~pgRT~~qcknRw~~llr~k~~  114 (255)
                      .||..+++|+..+|.+||...+.....
T Consensus        96 tia~~~d~rt~~~~~ery~~~~~~~~s  122 (512)
T COG5147          96 TIADYKDRRTAQQCVERYVNTLEDLSS  122 (512)
T ss_pred             hhccccCccchHHHHHHHHHHhhhhhc
Confidence            999999999999999999988776543

>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins

Probab=99.45  E-value=1.4e-14  Score=98.48  Aligned_cols=47  Identities=40%  Similarity=0.892  Sum_probs=42.5

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCChhhhccCCC-CCCcccccccccccC
Q 046570           12 KGSWSPQEDATLIKLVEQHGPRNWSMISSGIP-GRSGKSCRLRWCNQL   58 (255)
Q Consensus        12 kg~WT~eED~~L~~lv~~~G~~~W~~IA~~lp-gRt~~qCr~Rw~~~L   58 (255)
                      ||+||++||++|+++|.+||..+|..||..|| +||+.||+.||.++|
T Consensus         1 r~~Wt~eE~~~l~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc~~~~~~~~   48 (48)
T PF00249_consen    1 RGPWTEEEDEKLLEAVKKYGKDNWKKIAKRMPGGRTAKQCRSRYQNLL   48 (48)
T ss_dssp             S-SS-HHHHHHHHHHHHHSTTTHHHHHHHHHSSSSTHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHhCCcHHHHHHHHcCCCCCHHHHHHHHHhhC
Confidence            68999999999999999999777999999999 999999999998764

These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....

>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]

Probab=99.41  E-value=1.8e-13  Score=134.61  Aligned_cols=101  Identities=23%  Similarity=0.520  Sum_probs=92.0

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCChhhhccCCCCCCcccccccccccCCCCc--cCCCCChhhHHHHHHHHH-------H
Q 046570           11 IKGSWSPQEDATLIKLVEQHGPRNWSMISSGIPGRSGKSCRLRWCNQLSPTV--QHRPFTPAEDSIIIQAHA-------V   81 (255)
Q Consensus        11 ~kg~WT~eED~~L~~lv~~~G~~~W~~IA~~lpgRt~~qCr~Rw~~~L~p~l--~k~~WT~eED~~Ll~~v~-------~   81 (255)
                      .+|+||++|++.|..+|..|| +.|..|+..| ||.+..|++||+++...+-  +++.||.+|.+.|+++|.       +
T Consensus       383 ~rg~wt~ee~eeL~~l~~~~g-~~W~~Ig~~l-gr~P~~crd~wr~~~~~g~~~~r~~Ws~eEe~~Llk~V~~~~~~~~q  460 (607)
T KOG0051|consen  383 KRGKWTPEEEEELKKLVVEHG-NDWKEIGKAL-GRMPMDCRDRWRQYVKCGSKRNRGAWSIEEEEKLLKTVNEMIREALQ  460 (607)
T ss_pred             ccCCCCcchHHHHHHHHHHhc-ccHHHHHHHH-ccCcHHHHHHHHHhhccccccccCcchHHHHHHHHHHHHHHHHHhhc
Confidence            899999999999999999999 7899999998 7999999999999999885  889999999999999995       3


Q ss_pred             c-------------------CCchhhhhccCCCCCHHHHHHHHHHHHHhHH
Q 046570           82 H-------------------GNKWATIARSLPGRTDNAIKNHWNSTLRRKR  113 (255)
Q Consensus        82 ~-------------------G~~W~~IA~~~pgRT~~qcknRw~~llr~k~  113 (255)
                      +                   +-.|..|+..+++|+..||+.+|..++....
T Consensus       461 ~q~~n~~~~~q~sp~s~~~d~I~Wt~vse~~~TR~~~qCr~Kw~kl~~~~s  511 (607)
T KOG0051|consen  461 PQASNTDTGLQESPESTLKDDINWTLVSEMLGTRSRIQCRYKWYKLTTSPS  511 (607)
T ss_pred             ccccccchhhhcCccccccCCcchhhhhHhhcCCCcchHHHHHHHHHhhHH
Confidence            3                   1269999999999999999999999887653

>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins

Probab=99.39  E-value=3e-13  Score=91.91  Aligned_cols=46  Identities=30%  Similarity=0.647  Sum_probs=41.8

Q ss_pred             CCCCChhhHHHHHHHHHHcCCc-hhhhhccCC-CCCHHHHHHHHHHHH
Q 046570           64 HRPFTPAEDSIIIQAHAVHGNK-WATIARSLP-GRTDNAIKNHWNSTL  109 (255)
Q Consensus        64 k~~WT~eED~~Ll~~v~~~G~~-W~~IA~~~p-gRT~~qcknRw~~ll  109 (255)
                      +++||++||++|++++.+||.. |..||..|| +||..||++||+.++
T Consensus         1 r~~Wt~eE~~~l~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc~~~~~~~~   48 (48)
T PF00249_consen    1 RGPWTEEEDEKLLEAVKKYGKDNWKKIAKRMPGGRTAKQCRSRYQNLL   48 (48)
T ss_dssp             S-SS-HHHHHHHHHHHHHSTTTHHHHHHHHHSSSSTHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHhCCcHHHHHHHHcCCCCCHHHHHHHHHhhC
Confidence            5799999999999999999988 999999999 999999999998864

These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....

>PLN03212 Transcription repressor MYB5; Provisional

Probab=99.23  E-value=1.2e-12  Score=116.63  Aligned_cols=59  Identities=24%  Similarity=0.469  Sum_probs=54.4

Q ss_pred             CCCCCCCCCCCCCCCHHHHHHHHHHHHHhCCCChhhhccCCCCCCcccccccccccCCCC
Q 046570            2 NSNSNNNDRIKGSWSPQEDATLIKLVEQHGPRNWSMISSGIPGRSGKSCRLRWCNQLSPT   61 (255)
Q Consensus         2 ~sn~l~~~~~kg~WT~eED~~L~~lv~~~G~~~W~~IA~~lpgRt~~qCr~Rw~~~L~p~   61 (255)
                      ..|+|+|.+++|+||++||++|++++..|| ..|..||..|||||..+|+.||..+|++.
T Consensus        68 W~N~L~P~I~kgpWT~EED~lLlel~~~~G-nKWs~IAk~LpGRTDnqIKNRWns~LrK~  126 (249)
T PLN03212         68 WMNYLRPSVKRGGITSDEEDLILRLHRLLG-NRWSLIAGRIPGRTDNEIKNYWNTHLRKK  126 (249)
T ss_pred             HHHhhchhcccCCCChHHHHHHHHHHHhcc-ccHHHHHhhcCCCCHHHHHHHHHHHHhHH
Confidence            357899999999999999999999999999 67999999999999999999998877644

>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Probab=99.20  E-value=2.2e-11  Score=80.60  Aligned_cols=47  Identities=36%  Similarity=0.745  Sum_probs=44.2

Q ss_pred             CCCCChhhHHHHHHHHHHcC-CchhhhhccCCCCCHHHHHHHHHHHHH
Q 046570           64 HRPFTPAEDSIIIQAHAVHG-NKWATIARSLPGRTDNAIKNHWNSTLR  110 (255)
Q Consensus        64 k~~WT~eED~~Ll~~v~~~G-~~W~~IA~~~pgRT~~qcknRw~~llr  110 (255)
                      +++||++|+.+|+.++..|| .+|..||..||+||+.+|++||..+++
T Consensus         1 ~~~Wt~~E~~~l~~~~~~~g~~~w~~Ia~~~~~rt~~~~~~~~~~~~~   48 (49)
T smart00717        1 KGEWTEEEDELLIELVKKYGKNNWEKIAKELPGRTAEQCRERWNNLLK   48 (49)
T ss_pred             CCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCHHHHHHHHHHHcC
Confidence            36899999999999999999 999999999999999999999998764

>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A

Probab=99.19  E-value=1.4e-11  Score=87.00  Aligned_cols=45  Identities=33%  Similarity=0.643  Sum_probs=39.1

Q ss_pred             CChhhHHHHHHHHHHcCCchhhhhccCCCCCHHHHHHHHHHHHHh
Q 046570           67 FTPAEDSIIIQAHAVHGNKWATIARSLPGRTDNAIKNHWNSTLRR  111 (255)
Q Consensus        67 WT~eED~~Ll~~v~~~G~~W~~IA~~~pgRT~~qcknRw~~llr~  111 (255)
                      ||++||.+|+++|..||++|..||..|+.||+.+|++||...|+.
T Consensus         1 WT~eEd~~L~~~~~~~g~~W~~Ia~~l~~Rt~~~~~~r~~~~l~~   45 (60)
T PF13921_consen    1 WTKEEDELLLELVKKYGNDWKKIAEHLGNRTPKQCRNRWRNHLRP   45 (60)
T ss_dssp             S-HHHHHHHHHHHHHHTS-HHHHHHHSTTS-HHHHHHHHHHTTST
T ss_pred             CCHHHHHHHHHHHHHHCcCHHHHHHHHCcCCHHHHHHHHHHHCcc
Confidence            999999999999999999999999999779999999999996653

...

>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Probab=99.17  E-value=1.5e-11  Score=81.39  Aligned_cols=48  Identities=46%  Similarity=0.974  Sum_probs=44.7

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCChhhhccCCCCCCcccccccccccCC
Q 046570           12 KGSWSPQEDATLIKLVEQHGPRNWSMISSGIPGRSGKSCRLRWCNQLS   59 (255)
Q Consensus        12 kg~WT~eED~~L~~lv~~~G~~~W~~IA~~lpgRt~~qCr~Rw~~~L~   59 (255)
                      +++||++||.+|+.++..||..+|..||..|++||+.+|+.||.+++.
T Consensus         1 ~~~Wt~~E~~~l~~~~~~~g~~~w~~Ia~~~~~rt~~~~~~~~~~~~~   48 (49)
T smart00717        1 KGEWTEEEDELLIELVKKYGKNNWEKIAKELPGRTAEQCRERWNNLLK   48 (49)
T ss_pred             CCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCHHHHHHHHHHHcC
Confidence            478999999999999999997789999999999999999999987664

>PLN03091 hypothetical protein; Provisional

Probab=99.12  E-value=9.2e-12  Score=118.59  Aligned_cols=58  Identities=29%  Similarity=0.499  Sum_probs=53.5

Q ss_pred             CCCCCCCCCCCCCCCHHHHHHHHHHHHHhCCCChhhhccCCCCCCcccccccccccCCC
Q 046570            2 NSNSNNNDRIKGSWSPQEDATLIKLVEQHGPRNWSMISSGIPGRSGKSCRLRWCNQLSP   60 (255)
Q Consensus         2 ~sn~l~~~~~kg~WT~eED~~L~~lv~~~G~~~W~~IA~~lpgRt~~qCr~Rw~~~L~p   60 (255)
                      .-|+|+|.+++|+||++||.+|++++.+|| ..|..||..|||||..+|+.||...|++
T Consensus        57 W~NyLdP~IkKgpWT~EED~lLLeL~k~~G-nKWskIAk~LPGRTDnqIKNRWnslLKK  114 (459)
T PLN03091         57 WINYLRPDLKRGTFSQQEENLIIELHAVLG-NRWSQIAAQLPGRTDNEIKNLWNSCLKK  114 (459)
T ss_pred             HHhccCCcccCCCCCHHHHHHHHHHHHHhC-cchHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence            347899999999999999999999999999 5799999999999999999999876654

>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

Probab=99.08  E-value=1.9e-10  Score=74.96  Aligned_cols=44  Identities=39%  Similarity=0.827  Sum_probs=41.7

Q ss_pred             CCChhhHHHHHHHHHHcC-CchhhhhccCCCCCHHHHHHHHHHHH
Q 046570           66 PFTPAEDSIIIQAHAVHG-NKWATIARSLPGRTDNAIKNHWNSTL  109 (255)
Q Consensus        66 ~WT~eED~~Ll~~v~~~G-~~W~~IA~~~pgRT~~qcknRw~~ll  109 (255)
                      +||++|+..|+.++..|| .+|..||..|++||..+|++||..++
T Consensus         1 ~Wt~eE~~~l~~~~~~~g~~~w~~Ia~~~~~rs~~~~~~~~~~~~   45 (45)
T cd00167           1 PWTEEEDELLLEAVKKYGKNNWEKIAKELPGRTPKQCRERWRNLL   45 (45)
T ss_pred             CCCHHHHHHHHHHHHHHCcCCHHHHHhHcCCCCHHHHHHHHHHhC
Confidence            599999999999999999 89999999999999999999998753

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.

>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

Probab=99.02  E-value=1.5e-10  Score=75.52  Aligned_cols=44  Identities=41%  Similarity=0.907  Sum_probs=41.6

Q ss_pred             CCCHHHHHHHHHHHHHhCCCChhhhccCCCCCCccccccccccc
Q 046570           14 SWSPQEDATLIKLVEQHGPRNWSMISSGIPGRSGKSCRLRWCNQ   57 (255)
Q Consensus        14 ~WT~eED~~L~~lv~~~G~~~W~~IA~~lpgRt~~qCr~Rw~~~   57 (255)
                      +||++|+..|+.++..||..+|..||..|++|++.+|+.||.++
T Consensus         1 ~Wt~eE~~~l~~~~~~~g~~~w~~Ia~~~~~rs~~~~~~~~~~~   44 (45)
T cd00167           1 PWTEEEDELLLEAVKKYGKNNWEKIAKELPGRTPKQCRERWRNL   44 (45)
T ss_pred             CCCHHHHHHHHHHHHHHCcCCHHHHHhHcCCCCHHHHHHHHHHh
Confidence            59999999999999999977899999999999999999999765

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.

>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]

Probab=99.01  E-value=1.4e-10  Score=103.61  Aligned_cols=55  Identities=31%  Similarity=0.631  Sum_probs=51.7

Q ss_pred             CCCCCCCCCCCCCCHHHHHHHHHHHHHhCCCChhhhccCCCCCCcccccccccccC
Q 046570            3 SNSNNNDRIKGSWSPQEDATLIKLVEQHGPRNWSMISSGIPGRSGKSCRLRWCNQL   58 (255)
Q Consensus         3 sn~l~~~~~kg~WT~eED~~L~~lv~~~G~~~W~~IA~~lpgRt~~qCr~Rw~~~L   58 (255)
                      .|+|+|++++|.||+|||.+|++|++.+| +.|..||++|||||...++.+|...|
T Consensus        53 ~NyLrP~ikrg~fT~eEe~~Ii~lH~~~G-NrWs~IA~~LPGRTDNeIKN~Wnt~l  107 (238)
T KOG0048|consen   53 TNYLRPDLKRGNFSDEEEDLIIKLHALLG-NRWSLIAGRLPGRTDNEVKNHWNTHL  107 (238)
T ss_pred             hcccCCCccCCCCCHHHHHHHHHHHHHHC-cHHHHHHhhCCCcCHHHHHHHHHHHH
Confidence            58999999999999999999999999999 77999999999999999999996655

>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]

Probab=98.90  E-value=7.8e-10  Score=109.21  Aligned_cols=114  Identities=23%  Similarity=0.330  Sum_probs=91.9

Q ss_pred             CCCCCCCHHHHHHHHHHHHHh----CCC-------------------ChhhhccCCCCCCcccccccccccCCCCc-cCC
Q 046570           10 RIKGSWSPQEDATLIKLVEQH----GPR-------------------NWSMISSGIPGRSGKSCRLRWCNQLSPTV-QHR   65 (255)
Q Consensus        10 ~~kg~WT~eED~~L~~lv~~~----G~~-------------------~W~~IA~~lpgRt~~qCr~Rw~~~L~p~l-~k~   65 (255)
                      ++-+.|+.+||..|.+.|..|    |-.                   -|..|...||.|+...++.+-++...|.- .+|
T Consensus       306 ~~~~~F~~eed~ale~~V~~y~~~eg~s~~q~~~~i~s~~~~~~~~~l~n~~~~~Lp~R~~~siy~~~rR~y~~FE~~rg  385 (607)
T KOG0051|consen  306 INLKKFSKEEDAALENFVNEYLANEGWSSEQFCQRIWSKDWKTIIRNLYNNLYKLLPYRDRKSIYHHLRRAYTPFENKRG  385 (607)
T ss_pred             hhhhhccHHHHHHHHHHHHHHHHhhCcchhhhhhheeccCcchHHHHHHHhhhhhcCcccchhHHHHHHhcCCccccccC
Confidence            445889999999999999766    111                   17788889999999999885444444444 899


Q ss_pred             CCChhhHHHHHHHHHHcCCchhhhhccCCCCCHHHHHHHHHHHHHhHHHhhhhcCCcCC
Q 046570           66 PFTPAEDSIIIQAHAVHGNKWATIARSLPGRTDNAIKNHWNSTLRRKRMAELSSASSES  124 (255)
Q Consensus        66 ~WT~eED~~Ll~~v~~~G~~W~~IA~~~pgRT~~qcknRw~~llr~k~~~~~~~~~~~~  124 (255)
                      .||++|++.|..+|.++|+.|..|+..| ||.+..|+.||+.+++.........|+.+.
T Consensus       386 ~wt~ee~eeL~~l~~~~g~~W~~Ig~~l-gr~P~~crd~wr~~~~~g~~~~r~~Ws~eE  443 (607)
T KOG0051|consen  386 KWTPEEEEELKKLVVEHGNDWKEIGKAL-GRMPMDCRDRWRQYVKCGSKRNRGAWSIEE  443 (607)
T ss_pred             CCCcchHHHHHHHHHHhcccHHHHHHHH-ccCcHHHHHHHHHhhccccccccCcchHHH
Confidence            9999999999999999999999999999 999999999999998766434444555443

>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]

Probab=98.36  E-value=2.2e-07  Score=91.07  Aligned_cols=105  Identities=21%  Similarity=0.191  Sum_probs=91.4

Q ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHHhCCCChhhhccCCCCCCcccccccccccCCCCccCCCCChhhHHHHHHHHHHcC
Q 046570            4 NSNNNDRIKGSWSPQEDATLIKLVEQHGPRNWSMISSGIPGRSGKSCRLRWCNQLSPTVQHRPFTPAEDSIIIQAHAVHG   83 (255)
Q Consensus         4 n~l~~~~~kg~WT~eED~~L~~lv~~~G~~~W~~IA~~lpgRt~~qCr~Rw~~~L~p~l~k~~WT~eED~~Ll~~v~~~G   83 (255)
                      ++++|.++++.|+.+||..|+.+...+|+ .|..||..+++|+..+|..||.+.+.+... .+|+.......+-.+..|+
T Consensus        64 ~~lnp~lk~~~~~~eed~~li~l~~~~~~-~wstia~~~d~rt~~~~~ery~~~~~~~~s-~~~s~~~~~~~f~k~d~f~  141 (512)
T COG5147          64 NHLNPQLKKKNWSEEEDEQLIDLDKELGT-QWSTIADYKDRRTAQQCVERYVNTLEDLSS-THDSKLQRRNEFDKIDPFN  141 (512)
T ss_pred             hhhchhcccccccHHHHHHHHHHHHhcCc-hhhhhccccCccchHHHHHHHHHHhhhhhc-cccccccchhhccccCchh
Confidence            57899999999999999999999999996 599999999999999999999999987666 8999999888888888888


Q ss_pred             CchhhhhccCCCCCHHHHHHHHHHHHH
Q 046570           84 NKWATIARSLPGRTDNAIKNHWNSTLR  110 (255)
Q Consensus        84 ~~W~~IA~~~pgRT~~qcknRw~~llr  110 (255)
                      ..|.++....-.+-...|.+++..+..
T Consensus       142 ~~~~~~~~~~~~~~~~~~~N~~~~~~~  168 (512)
T COG5147         142 ENSARRPDIYEDELLEREVNREASYRL  168 (512)
T ss_pred             hhhhhhhhhhhcccchhhhhHHHHHHH
Confidence            888888777666777777777765543

>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class

Probab=97.94  E-value=1.8e-05  Score=56.04  Aligned_cols=47  Identities=17%  Similarity=0.220  Sum_probs=41.6

Q ss_pred             CCCCChhhHHHHHHHHHHcCC-ch---hhhhccCC-CC-CHHHHHHHHHHHHH
Q 046570           64 HRPFTPAEDSIIIQAHAVHGN-KW---ATIARSLP-GR-TDNAIKNHWNSTLR  110 (255)
Q Consensus        64 k~~WT~eED~~Ll~~v~~~G~-~W---~~IA~~~p-gR-T~~qcknRw~~llr  110 (255)
                      +-.||++|+.++++++..+|. +|   ..|+..|. .| |..||+.|++.+.-
T Consensus         3 r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy~~   55 (57)
T TIGR01557         3 RVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYRL   55 (57)
T ss_pred             CCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHHHHHc
Confidence            457999999999999999996 99   99999886 45 99999999987753

This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.

>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=97.86  E-value=6.7e-06  Score=78.62  Aligned_cols=51  Identities=22%  Similarity=0.476  Sum_probs=46.8

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCCCChhhhccCCCCCCcccccccccccC
Q 046570            8 NDRIKGSWSPQEDATLIKLVEQHGPRNWSMISSGIPGRSGKSCRLRWCNQL   58 (255)
Q Consensus         8 ~~~~kg~WT~eED~~L~~lv~~~G~~~W~~IA~~lpgRt~~qCr~Rw~~~L   58 (255)
                      -.+-...||++|+-+|++++..||.+||..||.+|..|+..+|+++|.+++
T Consensus        68 ~~i~~~~WtadEEilLLea~~t~G~GNW~dIA~hIGtKtkeeck~hy~k~f  118 (438)
T KOG0457|consen   68 FPILDPSWTADEEILLLEAAETYGFGNWQDIADHIGTKTKEECKEHYLKHF  118 (438)
T ss_pred             CCCCCCCCChHHHHHHHHHHHHhCCCcHHHHHHHHcccchHHHHHHHHHHH
Confidence            355677899999999999999999999999999999999999999997754

>PF13325 MCRS_N: N-terminal region of micro-spherule protein

Probab=97.74  E-value=0.00012  Score=64.07  Aligned_cols=101  Identities=20%  Similarity=0.417  Sum_probs=76.7

Q ss_pred             CCCHHHHHHHHHHHHHhCCCChhhhccCC---CCCCcccccccccccCC----------------CCc-----cCCCCCh
Q 046570           14 SWSPQEDATLIKLVEQHGPRNWSMISSGI---PGRSGKSCRLRWCNQLS----------------PTV-----QHRPFTP   69 (255)
Q Consensus        14 ~WT~eED~~L~~lv~~~G~~~W~~IA~~l---pgRt~~qCr~Rw~~~L~----------------p~l-----~k~~WT~   69 (255)
                      +|++..|-+|+.+|....  +-..|+..+   ..-|...+..||+..|-                |..     .+.+||.
T Consensus         1 rW~~~DDl~Li~av~~~~--~L~~v~~gvkFS~~fT~~Ei~~RW~~llyd~~is~~a~~~m~~l~p~~~~~iq~kalfS~   78 (199)
T PF13325_consen    1 RWKPEDDLLLINAVEQTN--DLESVHLGVKFSCKFTLQEIEERWYALLYDPVISRIAVAAMRNLHPELIAAIQSKALFSK   78 (199)
T ss_pred             CCCchhhHHHHHHHHHhc--CHHHHHccCCcCCcCcHHHHHHHHHHHHcChhhHHHHHHHHHhCCcchhhcccccCCCCH
Confidence            699999999999998776  677777766   34677888999987553                222     2579999


Q ss_pred             hhHHHHHHHHHHcCC---chhhhhc-----cCCCCCHHHHHHHHHHHHHhHHHhh
Q 046570           70 AEDSIIIQAHAVHGN---KWATIAR-----SLPGRTDNAIKNHWNSTLRRKRMAE  116 (255)
Q Consensus        70 eED~~Ll~~v~~~G~---~W~~IA~-----~~pgRT~~qcknRw~~llr~k~~~~  116 (255)
                      +|+++|.........   .+.+|-.     +.++||+.++..+|..+.+..+...
T Consensus        79 ~EE~lL~~v~s~~~p~le~Fq~LL~~n~~vFh~sRTak~L~~HW~lmkqy~LL~D  133 (199)
T PF13325_consen   79 EEEQLLGTVASSSQPSLETFQELLDKNRSVFHPSRTAKSLQDHWRLMKQYHLLPD  133 (199)
T ss_pred             HHHHHHHhhhhccCCcHHHHHHHHHhChhhhccccCHHHHHHHHHHHHHhchhhc
Confidence            999999997655543   4777733     3468999999999997777766643

>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=97.63  E-value=8e-05  Score=71.36  Aligned_cols=50  Identities=20%  Similarity=0.442  Sum_probs=45.1

Q ss_pred             ccCCCCChhhHHHHHHHHHHcC-CchhhhhccCCCCCHHHHHHHHHHHHHh
Q 046570           62 VQHRPFTPAEDSIIIQAHAVHG-NKWATIARSLPGRTDNAIKNHWNSTLRR  111 (255)
Q Consensus        62 l~k~~WT~eED~~Ll~~v~~~G-~~W~~IA~~~pgRT~~qcknRw~~llr~  111 (255)
                      +-...||.+|+-+||+++..|| ++|..||.+++.|+..+|+.+|.+++-.
T Consensus        70 i~~~~WtadEEilLLea~~t~G~GNW~dIA~hIGtKtkeeck~hy~k~fv~  120 (438)
T KOG0457|consen   70 ILDPSWTADEEILLLEAAETYGFGNWQDIADHIGTKTKEECKEHYLKHFVN  120 (438)
T ss_pred             CCCCCCChHHHHHHHHHHHHhCCCcHHHHHHHHcccchHHHHHHHHHHHhc
Confidence            3456899999999999999999 8999999999999999999999876543

>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class

Probab=97.61  E-value=4.2e-05  Score=54.12  Aligned_cols=48  Identities=10%  Similarity=0.197  Sum_probs=41.4

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCCh---hhhccCCC-CC-CcccccccccccC
Q 046570           11 IKGSWSPQEDATLIKLVEQHGPRNW---SMISSGIP-GR-SGKSCRLRWCNQL   58 (255)
Q Consensus        11 ~kg~WT~eED~~L~~lv~~~G~~~W---~~IA~~lp-gR-t~~qCr~Rw~~~L   58 (255)
                      .+-.||++|..+++.++..+|.++|   ..|+..|. .+ |..||+.|++.|.
T Consensus         2 ~r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy~   54 (57)
T TIGR01557         2 PRVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYR   54 (57)
T ss_pred             CCCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence            4567999999999999999997799   99998773 45 9999999987653

This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.

>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]

Probab=97.28  E-value=0.00021  Score=69.83  Aligned_cols=53  Identities=25%  Similarity=0.394  Sum_probs=47.9

Q ss_pred             ccCCCCChhhHHHHHHHHHHcC-CchhhhhccCCCCCHHHHHHHHHHHHHhHHH
Q 046570           62 VQHRPFTPAEDSIIIQAHAVHG-NKWATIARSLPGRTDNAIKNHWNSTLRRKRM  114 (255)
Q Consensus        62 l~k~~WT~eED~~Ll~~v~~~G-~~W~~IA~~~pgRT~~qcknRw~~llr~k~~  114 (255)
                      ++.+.|+--||+.|..+|.+|| +.|++|++.++-.|+.||++||..++....+
T Consensus         5 ~kggvwrntEdeilkaav~kyg~nqws~i~sll~~kt~rqC~~rw~e~ldp~i~   58 (617)
T KOG0050|consen    5 IKGGVWRNTEDEVLKAAVMKYGKNQWSRIASLLNRKTARQCKARWEEWLDPAIK   58 (617)
T ss_pred             EecceecccHHHHHHHHHHHcchHHHHHHHHHHhhcchhHHHHHHHHHhCHHHh
Confidence            4568999999999999999999 5699999999999999999999998876643

>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]

Probab=97.20  E-value=0.00017  Score=69.75  Aligned_cols=46  Identities=22%  Similarity=0.468  Sum_probs=42.9

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCChhhhccCCCCCCccccccccccc
Q 046570           11 IKGSWSPQEDATLIKLVEQHGPRNWSMISSGIPGRSGKSCRLRWCNQ   57 (255)
Q Consensus        11 ~kg~WT~eED~~L~~lv~~~G~~~W~~IA~~lpgRt~~qCr~Rw~~~   57 (255)
                      ....||.+|..+|++.|..|| .+|.+||.|+.+|+..||..||.+.
T Consensus       278 ~dk~WS~qE~~LLLEGIe~yg-DdW~kVA~HVgtKt~EqCIl~FL~L  323 (531)
T COG5259         278 RDKNWSRQELLLLLEGIEMYG-DDWDKVARHVGTKTKEQCILHFLQL  323 (531)
T ss_pred             ccccccHHHHHHHHHHHHHhh-hhHHHHHHHhCCCCHHHHHHHHHcC
Confidence            566899999999999999999 6899999999999999999999763

>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]

Probab=97.10  E-value=0.00035  Score=68.94  Aligned_cols=48  Identities=21%  Similarity=0.576  Sum_probs=44.5

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCCCChhhhccCCCCCCcccccccccc
Q 046570            8 NDRIKGSWSPQEDATLIKLVEQHGPRNWSMISSGIPGRSGKSCRLRWCN   56 (255)
Q Consensus         8 ~~~~kg~WT~eED~~L~~lv~~~G~~~W~~IA~~lpgRt~~qCr~Rw~~   56 (255)
                      ....++.||.+|.-+|+++|..|| .+|.+||.++.+||..||..++.+
T Consensus       249 ~~~~~~~WT~qE~lLLLE~ie~y~-ddW~kVa~hVg~ks~eqCI~kFL~  296 (506)
T KOG1279|consen  249 GESARPNWTEQETLLLLEAIEMYG-DDWNKVADHVGTKSQEQCILKFLR  296 (506)
T ss_pred             cccCCCCccHHHHHHHHHHHHHhc-ccHHHHHhccCCCCHHHHHHHHHh
Confidence            456678899999999999999999 689999999999999999999976

>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]

Probab=97.06  E-value=0.00047  Score=66.75  Aligned_cols=45  Identities=16%  Similarity=0.369  Sum_probs=42.5

Q ss_pred             CCCCChhhHHHHHHHHHHcCCchhhhhccCCCCCHHHHHHHHHHH
Q 046570           64 HRPFTPAEDSIIIQAHAVHGNKWATIARSLPGRTDNAIKNHWNST  108 (255)
Q Consensus        64 k~~WT~eED~~Ll~~v~~~G~~W~~IA~~~pgRT~~qcknRw~~l  108 (255)
                      ..+||.+|..+|++++..||..|.+||.++++||..||--||..+
T Consensus       279 dk~WS~qE~~LLLEGIe~ygDdW~kVA~HVgtKt~EqCIl~FL~L  323 (531)
T COG5259         279 DKNWSRQELLLLLEGIEMYGDDWDKVARHVGTKTKEQCILHFLQL  323 (531)
T ss_pred             cccccHHHHHHHHHHHHHhhhhHHHHHHHhCCCCHHHHHHHHHcC
Confidence            358999999999999999999999999999999999999999765

>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]

Probab=96.93  E-value=0.001  Score=65.75  Aligned_cols=46  Identities=13%  Similarity=0.305  Sum_probs=43.2

Q ss_pred             cCCCCChhhHHHHHHHHHHcCCchhhhhccCCCCCHHHHHHHHHHH
Q 046570           63 QHRPFTPAEDSIIIQAHAVHGNKWATIARSLPGRTDNAIKNHWNST  108 (255)
Q Consensus        63 ~k~~WT~eED~~Ll~~v~~~G~~W~~IA~~~pgRT~~qcknRw~~l  108 (255)
                      .+..||.+|..+|++++..||-.|.+||.++++||..||--||..+
T Consensus       252 ~~~~WT~qE~lLLLE~ie~y~ddW~kVa~hVg~ks~eqCI~kFL~L  297 (506)
T KOG1279|consen  252 ARPNWTEQETLLLLEAIEMYGDDWNKVADHVGTKSQEQCILKFLRL  297 (506)
T ss_pred             CCCCccHHHHHHHHHHHHHhcccHHHHHhccCCCCHHHHHHHHHhc
Confidence            3568999999999999999999999999999999999999999765

>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family

Probab=96.85  E-value=0.0014  Score=55.42  Aligned_cols=54  Identities=24%  Similarity=0.479  Sum_probs=45.4

Q ss_pred             cCCCCChhhHHHHHHHHHHc---CC----chhhhhccCCCCCHHHHHHHHHHHHHhHHHhhh
Q 046570           63 QHRPFTPAEDSIIIQAHAVH---GN----KWATIARSLPGRTDNAIKNHWNSTLRRKRMAEL  117 (255)
Q Consensus        63 ~k~~WT~eED~~Ll~~v~~~---G~----~W~~IA~~~pgRT~~qcknRw~~llr~k~~~~~  117 (255)
                      ....||.+||.+|-+.|..|   |+    -...++..+ +||+.+|.-||+..+|++.....
T Consensus         3 RQDAWT~eeDlLLAEtVLrhIReG~TQL~AFeEvg~~L-~RTsAACGFRWNs~VRkqY~~~i   63 (161)
T TIGR02894         3 RQDAWTHEEDLLLAETVLRHIREGSTQLSAFEEVGRAL-NRTAAACGFRWNAYVRKQYEEAI   63 (161)
T ss_pred             cccccccHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH-cccHHHhcchHHHHHHHHHHHHH
Confidence            35689999999999998876   32    378888888 99999999999999998866543

In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.

>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A

Probab=96.82  E-value=0.00079  Score=50.46  Aligned_cols=50  Identities=24%  Similarity=0.496  Sum_probs=36.7

Q ss_pred             CCCChhhHHHHHHHHHH------cC--C------chhhhhccCC----CCCHHHHHHHHHHHHHhHHH
Q 046570           65 RPFTPAEDSIIIQAHAV------HG--N------KWATIARSLP----GRTDNAIKNHWNSTLRRKRM  114 (255)
Q Consensus        65 ~~WT~eED~~Ll~~v~~------~G--~------~W~~IA~~~p----gRT~~qcknRw~~llr~k~~  114 (255)
                      ..||.+|...||.++..      ++  +      -|..||..|.    .||+.||++||.++.+....
T Consensus         2 ~~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~~~G~~rt~~qc~~Kw~~L~~~Yk~   69 (90)
T PF13837_consen    2 RNWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELAEHGYNRTPEQCRNKWKNLKKKYKK   69 (90)
T ss_dssp             -SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHHHHC----HHHHHHHHHHHHHHHHC
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Confidence            57999999999999876      21  1      3999999863    79999999999998776643

>PF08914 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR015010 Rap1 Myb adopts a canonical three-helix bundle tertiary structure, with the second and third helices forming a helix-turn-helix variant motif

Probab=96.56  E-value=0.0032  Score=45.71  Aligned_cols=50  Identities=22%  Similarity=0.452  Sum_probs=33.0

Q ss_pred             CCCCChhhHHHHHHHHHHcC--------Cc-hhhhhccCC-CCCHHHHHHHHHHHHHhHH
Q 046570           64 HRPFTPAEDSIIIQAHAVHG--------NK-WATIARSLP-GRTDNAIKNHWNSTLRRKR  113 (255)
Q Consensus        64 k~~WT~eED~~Ll~~v~~~G--------~~-W~~IA~~~p-gRT~~qcknRw~~llr~k~  113 (255)
                      +.+||.+||..|+..|+.+.        ++ |.+++...| .+|-.+.|+||.+.|+.+.
T Consensus         2 R~~fT~edD~~l~~~v~~~~~~~~~~~Gn~iwk~le~~~~t~HtwQSwR~Ry~K~L~~~~   61 (65)
T PF08914_consen    2 RTPFTEEDDAALLDYVKENERQGGSVSGNKIWKELEEKHPTRHTWQSWRDRYLKHLRGRP   61 (65)
T ss_dssp             -----HHHHHHHHHHHHHT--STTTTTSSHHHHHHHHS-SSS--SHHHHHHHHHHT----
T ss_pred             CCCCCHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccc
Confidence            46899999999999997542        22 999999988 9999999999988887654

The function is unclear but it may either interact with DNA via an adaptor protein or it may be only involved in protein-protein interactions []. ; PDB: 1FEX_A.

>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family

Probab=96.37  E-value=0.0013  Score=55.57  Aligned_cols=50  Identities=22%  Similarity=0.565  Sum_probs=41.6

Q ss_pred             CCCCCCCHHHHHHHHHHHHHh---CCC---ChhhhccCCCCCCcccccccccccCCC
Q 046570           10 RIKGSWSPQEDATLIKLVEQH---GPR---NWSMISSGIPGRSGKSCRLRWCNQLSP   60 (255)
Q Consensus        10 ~~kg~WT~eED~~L~~lv~~~---G~~---~W~~IA~~lpgRt~~qCr~Rw~~~L~p   60 (255)
                      .+...||.+||.+|.+.|-+|   |.-   .+..|+..| +||+..|.-||..++.+
T Consensus         2 ~RQDAWT~eeDlLLAEtVLrhIReG~TQL~AFeEvg~~L-~RTsAACGFRWNs~VRk   57 (161)
T TIGR02894         2 TRQDAWTHEEDLLLAETVLRHIREGSTQLSAFEEVGRAL-NRTAAACGFRWNAYVRK   57 (161)
T ss_pred             ccccccccHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH-cccHHHhcchHHHHHHH
Confidence            467789999999999999988   311   388888888 79999999999887763

In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.

>PF08914 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR015010 Rap1 Myb adopts a canonical three-helix bundle tertiary structure, with the second and third helices forming a helix-turn-helix variant motif

Probab=95.91  E-value=0.0027  Score=46.06  Aligned_cols=51  Identities=20%  Similarity=0.379  Sum_probs=32.3

Q ss_pred             CCCCCHHHHHHHHHHHHHhCC------C--ChhhhccCCC-CCCcccccccccccCCCCc
Q 046570           12 KGSWSPQEDATLIKLVEQHGP------R--NWSMISSGIP-GRSGKSCRLRWCNQLSPTV   62 (255)
Q Consensus        12 kg~WT~eED~~L~~lv~~~G~------~--~W~~IA~~lp-gRt~~qCr~Rw~~~L~p~l   62 (255)
                      +-+||.+||..|+..|..+..      +  -|..++..-| .+|-++-++||...|.+..
T Consensus         2 R~~fT~edD~~l~~~v~~~~~~~~~~~Gn~iwk~le~~~~t~HtwQSwR~Ry~K~L~~~~   61 (65)
T PF08914_consen    2 RTPFTEEDDAALLDYVKENERQGGSVSGNKIWKELEEKHPTRHTWQSWRDRYLKHLRGRP   61 (65)
T ss_dssp             -----HHHHHHHHHHHHHT--STTTTTSSHHHHHHHHS-SSS--SHHHHHHHHHHT----
T ss_pred             CCCCCHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccc
Confidence            468999999999999966521      1  2999988877 8999999999998887643

The function is unclear but it may either interact with DNA via an adaptor protein or it may be only involved in protein-protein interactions []. ; PDB: 1FEX_A.

>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=95.83  E-value=0.009  Score=55.76  Aligned_cols=47  Identities=21%  Similarity=0.444  Sum_probs=42.9

Q ss_pred             CCCCChhhHHHHHHHHHHcC-CchhhhhccCCCCCHHHHHHHHHHHHH
Q 046570           64 HRPFTPAEDSIIIQAHAVHG-NKWATIARSLPGRTDNAIKNHWNSTLR  110 (255)
Q Consensus        64 k~~WT~eED~~Ll~~v~~~G-~~W~~IA~~~pgRT~~qcknRw~~llr  110 (255)
                      -..|+..|+.+|+++....| ++|..||.+++.|+...||.+|.++.-
T Consensus        63 ~e~WgadEEllli~~~~TlGlGNW~dIadyiGsr~kee~k~HylK~y~  110 (432)
T COG5114          63 EEGWGADEELLLIECLDTLGLGNWEDIADYIGSRAKEEIKSHYLKMYD  110 (432)
T ss_pred             CCCcCchHHHHHHHHHHhcCCCcHHHHHHHHhhhhhHHHHHHHHHHHh
Confidence            35799999999999999999 899999999999999999999977643

>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A

Probab=95.80  E-value=0.0021  Score=48.13  Aligned_cols=46  Identities=26%  Similarity=0.615  Sum_probs=31.7

Q ss_pred             CCCCCHHHHHHHHHHHHH--h----C--CC-----ChhhhccCC----CCCCccccccccccc
Q 046570           12 KGSWSPQEDATLIKLVEQ--H----G--PR-----NWSMISSGI----PGRSGKSCRLRWCNQ   57 (255)
Q Consensus        12 kg~WT~eED~~L~~lv~~--~----G--~~-----~W~~IA~~l----pgRt~~qCr~Rw~~~   57 (255)
                      +-.||.+|...|+.++..  +    +  ..     -|..||..|    ..||+.||+.+|.++
T Consensus         1 R~~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~~~G~~rt~~qc~~Kw~~L   63 (90)
T PF13837_consen    1 RRNWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELAEHGYNRTPEQCRNKWKNL   63 (90)
T ss_dssp             --SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHHHHC----HHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence            357999999999999977  1    1  11     399999877    369999999999763

>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=95.69  E-value=0.003  Score=58.87  Aligned_cols=48  Identities=21%  Similarity=0.437  Sum_probs=43.8

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCChhhhccCCCCCCcccccccccccCC
Q 046570           12 KGSWSPQEDATLIKLVEQHGPRNWSMISSGIPGRSGKSCRLRWCNQLS   59 (255)
Q Consensus        12 kg~WT~eED~~L~~lv~~~G~~~W~~IA~~lpgRt~~qCr~Rw~~~L~   59 (255)
                      ---|+..|+-+|++.....|.+||..||.++..|+...|+.||..++.
T Consensus        63 ~e~WgadEEllli~~~~TlGlGNW~dIadyiGsr~kee~k~HylK~y~  110 (432)
T COG5114          63 EEGWGADEELLLIECLDTLGLGNWEDIADYIGSRAKEEIKSHYLKMYD  110 (432)
T ss_pred             CCCcCchHHHHHHHHHHhcCCCcHHHHHHHHhhhhhHHHHHHHHHHHh
Confidence            345999999999999999999999999999999999999999977543

>PRK13923 putative spore coat protein regulator protein YlbO; Provisional

Probab=95.63  E-value=0.013  Score=50.24  Aligned_cols=53  Identities=21%  Similarity=0.400  Sum_probs=42.6

Q ss_pred             cCCCCChhhHHHHHHHHHHcCCc-------hhhhhccCCCCCHHHHHHHHHHHHHhHHHhh
Q 046570           63 QHRPFTPAEDSIIIQAHAVHGNK-------WATIARSLPGRTDNAIKNHWNSTLRRKRMAE  116 (255)
Q Consensus        63 ~k~~WT~eED~~Ll~~v~~~G~~-------W~~IA~~~pgRT~~qcknRw~~llr~k~~~~  116 (255)
                      ++..||.++|.+|-+.|..|+..       ...++..+ +||+.+|..||+.+++++....
T Consensus         4 rqdawt~e~d~llae~vl~~i~eg~tql~afe~~g~~L-~rt~aac~fRwNs~vrk~Yee~   63 (170)
T PRK13923          4 RQDAWTQERDGLLAEVVLRHIREGGTQLKAFEEVGDAL-KRTAAACGFRWNSVVRKQYQEQ   63 (170)
T ss_pred             hhhhhhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHH-hhhHHHHHhHHHHHHHHHHHHH
Confidence            45789999999998888877632       55556677 9999999999999999875443

>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain

Probab=95.51  E-value=0.028  Score=41.20  Aligned_cols=50  Identities=22%  Similarity=0.489  Sum_probs=40.8

Q ss_pred             CCCCChhhHHHHHHHHHHcCC-----------------chhhhhccC-----CCCCHHHHHHHHHHHHHhHH
Q 046570           64 HRPFTPAEDSIIIQAHAVHGN-----------------KWATIARSL-----PGRTDNAIKNHWNSTLRRKR  113 (255)
Q Consensus        64 k~~WT~eED~~Ll~~v~~~G~-----------------~W~~IA~~~-----pgRT~~qcknRw~~llr~k~  113 (255)
                      ...||++|...|++++.+|..                 -|..|+..|     +.||..+|+.+|..+.....
T Consensus         2 ~~~fs~~E~~~Lv~~v~~~~~il~~k~~~~~~~~~k~~~W~~I~~~lN~~~~~~Rs~~~lkkkW~nlk~~~K   73 (78)
T PF13873_consen    2 KPNFSEEEKEILVELVEKHKDILENKFSDSVSNKEKRKAWEEIAEELNALGPGKRSWKQLKKKWKNLKSKAK   73 (78)
T ss_pred             CCCCCHHHHHHHHHHHHHhHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHH
Confidence            457999999999999987631                 399998875     26999999999998876543

>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional

Probab=95.19  E-value=0.04  Score=58.97  Aligned_cols=100  Identities=15%  Similarity=0.319  Sum_probs=78.3

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCChhhhccCCCCCCcccccc-------ccccc----------------------------
Q 046570           13 GSWSPQEDATLIKLVEQHGPRNWSMISSGIPGRSGKSCRL-------RWCNQ----------------------------   57 (255)
Q Consensus        13 g~WT~eED~~L~~lv~~~G~~~W~~IA~~lpgRt~~qCr~-------Rw~~~----------------------------   57 (255)
                      .-||.-+=..++.+..+||-.+...||..|.++|...++.       ||..+                            
T Consensus       825 ~~w~~~~f~~f~~~~~~~gr~~~~~i~~~~~~k~~~ev~~y~~~f~~~~~~~~~~~~~~~~ie~~e~~~~~~~~~~~~~~  904 (1033)
T PLN03142        825 STWSRRDFNAFIRACEKYGRNDIKSIASEMEGKTEEEVERYAKVFWERYKELNDYDRIIKNIERGEARISRKDEIMKAIG  904 (1033)
T ss_pred             CcccHHHHHHHHHHHHHhCHhHHHHHHHHhcCCCHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3599999999999999999889999999999999877763       22110                            


Q ss_pred             --------------C-CCCccCCCCChhhHHHHHHHHHHcC-Cchhhhhc------c------CCCCCHHHHHHHHHHHH
Q 046570           58 --------------L-SPTVQHRPFTPAEDSIIIQAHAVHG-NKWATIAR------S------LPGRTDNAIKNHWNSTL  109 (255)
Q Consensus        58 --------------L-~p~l~k~~WT~eED~~Ll~~v~~~G-~~W~~IA~------~------~pgRT~~qcknRw~~ll  109 (255)
                                    + .+..++..||++||..|+-++.+|| .+|..|-.      .      |..||+..|..|...++
T Consensus       905 ~k~~~~~~p~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~g~~~~~~~~~~i~~~~~f~fd~~~~srt~~~~~~r~~~l~  984 (1033)
T PLN03142        905 KKLDRYKNPWLELKIQYGQNKGKLYNEECDRFMLCMVHKLGYGNWDELKAAFRTSPLFRFDWFVKSRTPQELARRCDTLI  984 (1033)
T ss_pred             HHHHHccCcHHHceeecCCCCCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHhCCceeeehhhccCCHHHHHHHHHHHH
Confidence                          0 1223345799999999999999999 67999832      2      24899999999999988


Q ss_pred             HhH
Q 046570          110 RRK  112 (255)
Q Consensus       110 r~k  112 (255)
                      +--
T Consensus       985 ~~~  987 (1033)
T PLN03142        985 RLI  987 (1033)
T ss_pred             HHH
Confidence            654

>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain

Probab=95.00  E-value=0.014  Score=42.94  Aligned_cols=48  Identities=31%  Similarity=0.489  Sum_probs=38.6

Q ss_pred             CCCCCCHHHHHHHHHHHHHh-----CCC-----------ChhhhccCC-----CCCCcccccccccccC
Q 046570           11 IKGSWSPQEDATLIKLVEQH-----GPR-----------NWSMISSGI-----PGRSGKSCRLRWCNQL   58 (255)
Q Consensus        11 ~kg~WT~eED~~L~~lv~~~-----G~~-----------~W~~IA~~l-----pgRt~~qCr~Rw~~~L   58 (255)
                      ++..||++|...|+.+|.+|     |..           -|..|+..|     +.|+..||+..|.++.
T Consensus         1 R~~~fs~~E~~~Lv~~v~~~~~il~~k~~~~~~~~~k~~~W~~I~~~lN~~~~~~Rs~~~lkkkW~nlk   69 (78)
T PF13873_consen    1 RKPNFSEEEKEILVELVEKHKDILENKFSDSVSNKEKRKAWEEIAEELNALGPGKRSWKQLKKKWKNLK   69 (78)
T ss_pred             CCCCCCHHHHHHHHHHHHHhHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Confidence            35689999999999999887     211           299998876     3699999999998753

>PRK13923 putative spore coat protein regulator protein YlbO; Provisional

Probab=94.16  E-value=0.012  Score=50.45  Aligned_cols=49  Identities=18%  Similarity=0.527  Sum_probs=38.0

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCC------hhhhccCCCCCCcccccccccccCC
Q 046570           10 RIKGSWSPQEDATLIKLVEQHGPRN------WSMISSGIPGRSGKSCRLRWCNQLS   59 (255)
Q Consensus        10 ~~kg~WT~eED~~L~~lv~~~G~~~------W~~IA~~lpgRt~~qCr~Rw~~~L~   59 (255)
                      .+...||.++|.+|...|-.|+...      +..++..| +||+.+|..||..++.
T Consensus         3 ~rqdawt~e~d~llae~vl~~i~eg~tql~afe~~g~~L-~rt~aac~fRwNs~vr   57 (170)
T PRK13923          3 TRQDAWTQERDGLLAEVVLRHIREGGTQLKAFEEVGDAL-KRTAAACGFRWNSVVR   57 (170)
T ss_pred             chhhhhhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHH-hhhHHHHHhHHHHHHH
Confidence            4678999999999999998886332      45555555 7999999999965544

>KOG2656 consensus DNA methyltransferase 1-associated protein-1 [Chromatin structure and dynamics; Transcription]

Probab=94.01  E-value=0.1  Score=49.95  Aligned_cols=82  Identities=15%  Similarity=0.239  Sum_probs=67.9

Q ss_pred             ChhhhccCCCCCCcccccccccccCCCC-------------------------ccCCCCChhhHHHHHHHHHHcCCchhh
Q 046570           34 NWSMISSGIPGRSGKSCRLRWCNQLSPT-------------------------VQHRPFTPAEDSIIIQAHAVHGNKWAT   88 (255)
Q Consensus        34 ~W~~IA~~lpgRt~~qCr~Rw~~~L~p~-------------------------l~k~~WT~eED~~Ll~~v~~~G~~W~~   88 (255)
                      .|.-+.-..+.|...-.-.||....++.                         ++-..||.+|-.-|+.+++.|.-+|--
T Consensus        75 ~W~w~pFtn~aRkD~~~l~HWvr~~d~~~dypfakfNk~vdipsYt~eEYe~~l~dn~WskeETD~LF~lck~fDLRf~V  154 (445)
T KOG2656|consen   75 PWKWVPFTNSARKDDATLHHWVRVGDTPKDYPFAKFNKHVDIPSYTDEEYEAHLNDNSWSKEETDYLFDLCKRFDLRFFV  154 (445)
T ss_pred             CceeeccCCccccCCceEEeeeeccCCCCCCchhhhccccCccccchHHHHHhhccccccHHHHHHHHHHHHhcCeeEEE
Confidence            5888887778899888899998763321                         223469999999999999999999999


Q ss_pred             hhcc-----CCC-CCHHHHHHHHHHHHHhHHHh
Q 046570           89 IARS-----LPG-RTDNAIKNHWNSTLRRKRMA  115 (255)
Q Consensus        89 IA~~-----~pg-RT~~qcknRw~~llr~k~~~  115 (255)
                      ||..     ++. ||-..++.||+...+..++.
T Consensus       155 IaDRyd~qq~~~sRTvEdLKeRyY~v~r~l~kA  187 (445)
T KOG2656|consen  155 IADRYDNQQYKKSRTVEDLKERYYSVCRKLLKA  187 (445)
T ss_pred             EeeccchhhccccccHHHHHHHHHHHHHHHHHc
Confidence            9987     675 99999999999988877654

>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]

Probab=91.96  E-value=0.13  Score=49.17  Aligned_cols=49  Identities=24%  Similarity=0.400  Sum_probs=43.9

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCChhhhccCCCCCCcccccccccc
Q 046570            7 NNDRIKGSWSPQEDATLIKLVEQHGPRNWSMISSGIPGRSGKSCRLRWCN   56 (255)
Q Consensus         7 ~~~~~kg~WT~eED~~L~~lv~~~G~~~W~~IA~~lpgRt~~qCr~Rw~~   56 (255)
                      ......-+||..|-.++.++....| .++..||..+|+|..+|++..|.+
T Consensus       360 g~~~~~~~Ws~~e~ekFYKALs~wG-tdF~LIs~lfP~R~RkqIKaKfi~  408 (507)
T COG5118         360 GKKKGALRWSKKEIEKFYKALSIWG-TDFSLISSLFPNRERKQIKAKFIK  408 (507)
T ss_pred             cCCCCCCcccHHHHHHHHHHHHHhc-chHHHHHHhcCchhHHHHHHHHHH
Confidence            3455666899999999999999999 479999999999999999999976

>KOG4282 consensus Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain [Transcription]

Probab=91.76  E-value=0.35  Score=45.29  Aligned_cols=54  Identities=15%  Similarity=0.303  Sum_probs=42.8

Q ss_pred             CCCCChhhHHHHHHHHHHc----------CCchhhhhccCC----CCCHHHHHHHHHHHHHhHHHhhh
Q 046570           64 HRPFTPAEDSIIIQAHAVH----------GNKWATIARSLP----GRTDNAIKNHWNSTLRRKRMAEL  117 (255)
Q Consensus        64 k~~WT~eED~~Ll~~v~~~----------G~~W~~IA~~~p----gRT~~qcknRw~~llr~k~~~~~  117 (255)
                      ...|+.+|-..||.+....          +..|..||..+.    -||+.+|+++|.++.++......
T Consensus        54 ~~~Ws~~et~~Li~~~~~~~~~~~~~~~k~~~We~va~k~~~~g~~rs~~qck~K~~nl~k~Yk~~k~  121 (345)
T KOG4282|consen   54 EPRWSEEETLTLIEIRGEMDVALRRGKLKGPLWEEVARKMAELGYPRSPKQCKAKIENLKKKYKKEKA  121 (345)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHhc
Confidence            3689999999999997531          335999999543    59999999999999887655443

>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]

Probab=91.55  E-value=0.23  Score=47.47  Aligned_cols=47  Identities=17%  Similarity=0.282  Sum_probs=43.2

Q ss_pred             CCCChhhHHHHHHHHHHcCCchhhhhccCCCCCHHHHHHHHHHHHHh
Q 046570           65 RPFTPAEDSIIIQAHAVHGNKWATIARSLPGRTDNAIKNHWNSTLRR  111 (255)
Q Consensus        65 ~~WT~eED~~Ll~~v~~~G~~W~~IA~~~pgRT~~qcknRw~~llr~  111 (255)
                      .+||..|-+++..+....|..++.||..||.|...||+.+|.+--++
T Consensus       366 ~~Ws~~e~ekFYKALs~wGtdF~LIs~lfP~R~RkqIKaKfi~Eek~  412 (507)
T COG5118         366 LRWSKKEIEKFYKALSIWGTDFSLISSLFPNRERKQIKAKFIKEEKV  412 (507)
T ss_pred             CcccHHHHHHHHHHHHHhcchHHHHHHhcCchhHHHHHHHHHHHhhh
Confidence            48999999999999999999999999999999999999999765443

>PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices

Probab=91.21  E-value=0.3  Score=39.46  Aligned_cols=51  Identities=16%  Similarity=0.374  Sum_probs=40.0

Q ss_pred             CccCCCCChhhHHHHHHHHHHcCC----chhhhhcc------------CCCCCHHHHHHHHHHHHHh
Q 046570           61 TVQHRPFTPAEDSIIIQAHAVHGN----KWATIARS------------LPGRTDNAIKNHWNSTLRR  111 (255)
Q Consensus        61 ~l~k~~WT~eED~~Ll~~v~~~G~----~W~~IA~~------------~pgRT~~qcknRw~~llr~  111 (255)
                      ..++..||++||.-|+-++.+||-    .|..|...            |..||+..|..|-..+++-
T Consensus        46 ~~~~k~yseeEDRfLl~~~~~~G~~~~~~~e~Ik~~Ir~~p~FrFDwf~kSRt~~el~rR~~tLi~~  112 (118)
T PF09111_consen   46 NNKKKVYSEEEDRFLLCMLYKYGYDAEGNWEKIKQEIRESPLFRFDWFFKSRTPQELQRRCNTLIKL  112 (118)
T ss_dssp             TSS-SSS-HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHH-CGGCT-HHHHTS-HHHHHHHHHHHHHH
T ss_pred             CCCCCCcCcHHHHHHHHHHHHhCCCCCchHHHHHHHHHhCCCcccchhcccCCHHHHHHHHHHHHHH
Confidence            556779999999999999999996    69888543            2479999999999988864

It has a role in DNA binding, contacting DNA target sites similar to c-Myb (IPR014778 from INTERPRO) repeats or homeodomains []. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006338 chromatin remodeling, 0005634 nucleus; PDB: 2NOG_A 2Y9Y_A 2Y9Z_A 1OFC_X.

>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains

Probab=88.96  E-value=0.86  Score=34.24  Aligned_cols=48  Identities=25%  Similarity=0.538  Sum_probs=36.8

Q ss_pred             CCChhhHHHHHHHHHHc---CC----------chhhhhccCC-----CCCHHHHHHHHHHHHHhHH
Q 046570           66 PFTPAEDSIIIQAHAVH---GN----------KWATIARSLP-----GRTDNAIKNHWNSTLRRKR  113 (255)
Q Consensus        66 ~WT~eED~~Ll~~v~~~---G~----------~W~~IA~~~p-----gRT~~qcknRw~~llr~k~  113 (255)
                      .||++.+..|++++.+.   |+          .|..|+..|.     ..+..||++||..+.+...
T Consensus         1 ~Wt~~~~~~ll~~~~e~~~~g~~~~~~~fk~~~w~~i~~~~~~~~~~~~t~~qlknk~~~lk~~y~   66 (96)
T PF12776_consen    1 SWTPEMTRFLLDLLIEQINKGNRPTNGGFKKEGWNNIAEEFNEKTGLNYTKKQLKNKWKTLKKDYR   66 (96)
T ss_pred             CCChHHHHHHHHHHHHHHHhCCCCCCCCcCHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHH
Confidence            49999999999997542   21          3999988763     4678899999988776653

>PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices

Probab=87.50  E-value=0.17  Score=40.87  Aligned_cols=48  Identities=25%  Similarity=0.358  Sum_probs=36.5

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCC---CChhhhccCC------------CCCCccccccccc
Q 046570            8 NDRIKGSWSPQEDATLIKLVEQHGP---RNWSMISSGI------------PGRSGKSCRLRWC   55 (255)
Q Consensus         8 ~~~~kg~WT~eED~~L~~lv~~~G~---~~W~~IA~~l------------pgRt~~qCr~Rw~   55 (255)
                      +..++..||.+||.-|+-++.+||.   +.|..|-..|            ..||+..+..|..
T Consensus        45 ~~~~~k~yseeEDRfLl~~~~~~G~~~~~~~e~Ik~~Ir~~p~FrFDwf~kSRt~~el~rR~~  107 (118)
T PF09111_consen   45 PNNKKKVYSEEEDRFLLCMLYKYGYDAEGNWEKIKQEIRESPLFRFDWFFKSRTPQELQRRCN  107 (118)
T ss_dssp             STSS-SSS-HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHH-CGGCT-HHHHTS-HHHHHHHHH
T ss_pred             CCCCCCCcCcHHHHHHHHHHHHhCCCCCchHHHHHHHHHhCCCcccchhcccCCHHHHHHHHH
Confidence            3667888999999999999999998   7899987654            3577777777653

It has a role in DNA binding, contacting DNA target sites similar to c-Myb (IPR014778 from INTERPRO) repeats or homeodomains []. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006338 chromatin remodeling, 0005634 nucleus; PDB: 2NOG_A 2Y9Y_A 2Y9Z_A 1OFC_X.

>KOG4167 consensus Predicted DNA-binding protein, contains SANT and ELM2 domains [Transcription]

Probab=85.48  E-value=0.41  Score=49.29  Aligned_cols=44  Identities=11%  Similarity=0.326  Sum_probs=40.0

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCChhhhccCCCCCCcccccccccc
Q 046570           12 KGSWSPQEDATLIKLVEQHGPRNWSMISSGIPGRSGKSCRLRWCN   56 (255)
Q Consensus        12 kg~WT~eED~~L~~lv~~~G~~~W~~IA~~lpgRt~~qCr~Rw~~   56 (255)
                      ...||+.|-.++.+++..|. +++-.|+++|+++|..||-+.|+.
T Consensus       619 Sd~WTp~E~~lF~kA~y~~~-KDF~~v~km~~~KtVaqCVeyYYt  662 (907)
T KOG4167|consen  619 SDKWTPLERKLFNKALYTYS-KDFIFVQKMVKSKTVAQCVEYYYT  662 (907)
T ss_pred             cccccHHHHHHHHHHHHHhc-ccHHHHHHHhccccHHHHHHHHHH
Confidence            35799999999999999999 789999999999999999887753

>PF11626 Rap1_C: TRF2-interacting telomeric protein/Rap1 - C terminal domain; InterPro: IPR021661 This family of proteins represents the C-terminal domain of the protein Rap-1, which plays a distinct role in silencing at the silent mating-type loci and telomeres []

Probab=84.74  E-value=0.84  Score=34.57  Aligned_cols=29  Identities=34%  Similarity=0.775  Sum_probs=17.5

Q ss_pred             CCCCCCCCCHHHHHHH--------HHHHHHhCCCChhhhc
Q 046570            8 NDRIKGSWSPQEDATL--------IKLVEQHGPRNWSMIS   39 (255)
Q Consensus         8 ~~~~kg~WT~eED~~L--------~~lv~~~G~~~W~~IA   39 (255)
                      |....|-||+++|..|        ..++.+||   +..|+
T Consensus        43 P~n~~GiWT~eDD~~L~~~~~~~~~~L~~khG---~~~i~   79 (87)
T PF11626_consen   43 PDNMPGIWTPEDDEMLRSGDKDDIERLIKKHG---EERIE   79 (87)
T ss_dssp             -TT-TT---HHHHHHHTS--HHHHHHHHHHH----HHHHH
T ss_pred             CCCCCCCcCHHHHHHHHcCCHHHHHHHHHHhC---HHHHH
Confidence            6678999999999999        45667888   55554

The Rap-1 C terminus adopts an all-helical fold. Rap1 carries out its function by recruiting the Sir3 and Sir4 proteins to chromatin via its C-terminal domain []. ; PDB: 3K6G_C 3CZ6_A 3OWT_A.

>PF08281 Sigma70_r4_2: Sigma-70, region 4; InterPro: IPR013249 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription

Probab=84.04  E-value=2.3  Score=28.51  Aligned_cols=41  Identities=22%  Similarity=0.370  Sum_probs=30.1

Q ss_pred             hhhHHHHHHHHHHcCCchhhhhccCCCCCHHHHHHHHHHHHH
Q 046570           69 PAEDSIIIQAHAVHGNKWATIARSLPGRTDNAIKNHWNSTLR  110 (255)
Q Consensus        69 ~eED~~Ll~~v~~~G~~W~~IA~~~pgRT~~qcknRw~~llr  110 (255)
                      ++.+..++.++...|-.|.+||..+ |.|...|+.+...-++
T Consensus        12 ~~~~r~i~~l~~~~g~s~~eIa~~l-~~s~~~v~~~l~ra~~   52 (54)
T PF08281_consen   12 PERQREIFLLRYFQGMSYAEIAEIL-GISESTVKRRLRRARK   52 (54)
T ss_dssp             -HHHHHHHHHHHTS---HHHHHHHC-TS-HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCcCHHHHHHHH-CcCHHHHHHHHHHHHh
Confidence            4566778888888899999999999 9999999998876544

Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 4 of sigma-70 like sigma-factors are involved in binding to the -35 promoter element via a helix-turn-helix motif [].; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 2LFW_A 1OR7_B 2H27_D 2O8X_B.

>KOG1194 consensus Predicted DNA-binding protein, contains Myb-like, SANT and ELM2 domains [Transcription]

Probab=82.31  E-value=2.3  Score=41.76  Aligned_cols=49  Identities=18%  Similarity=0.290  Sum_probs=44.1

Q ss_pred             CCCCChhhHHHHHHHHHHcCCchhhhhccCCCCCHHHHHHHHHHHHHhH
Q 046570           64 HRPFTPAEDSIIIQAHAVHGNKWATIARSLPGRTDNAIKNHWNSTLRRK  112 (255)
Q Consensus        64 k~~WT~eED~~Ll~~v~~~G~~W~~IA~~~pgRT~~qcknRw~~llr~k  112 (255)
                      ...||.||--++-+++..||..+.+|-..||.|+-..+...|+...+..
T Consensus       187 ~d~WT~Ed~vlFe~aF~~~GK~F~kIrq~LP~rsLaSlvqyYy~~KK~~  235 (534)
T KOG1194|consen  187 PDEWTAEDIVLFEQAFQFFGKDFHKIRQALPHRSLASLVQYYYSWKKTR  235 (534)
T ss_pred             cccchHHHHHHHHHHHHHhcccHHHHHHHccCccHHHHHHHHHHHHHHh
Confidence            4589999999999999999999999999999999999999998776543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	255
1h88_C	159	Crystal Structure Of Ternary Protein-Dna Complex1 L		2e-31
1gv2_A	105	Crystal Structure Of C-Myb R2r3 Length = 105		3e-31
1mse_C	105	Solution Structure Of A Specific Dna Complex Of The		4e-31
1a5j_A	110	Chicken B-Myb Dna Binding Domain, Repeat 2 And Repe		5e-30
1h8a_C	128	Crystal Structure Of Ternary Protein-Dna Complex3 L		1e-28
3zqc_A	131	Structure Of The Trichomonas Vaginalis Myb3 Dna-Bin		2e-22
3osf_A	126	The Structure Of Protozoan Parasite Trichomonas Vag		5e-20
2k9n_A	107	Solution Nmr Structure Of The R2r3 Dna Binding Doma		1e-14
1mbj_A	53	Mouse C-Myb Dna-Binding Domain Repeat 3 Length = 53		1e-13
1idy_A	54	Structure Of Myb Transforming Protein, Nmr, Minimiz		2e-13
1gvd_A	52	Crystal Structure Of C-Myb R2 V103l Mutant Length =		2e-10
1gv5_A	52	Crystal Structure Of C-Myb R2 Length = 52		4e-10
1mbg_A	53	Mouse C-Myb Dna-Binding Domain Repeat 2 Length = 53		1e-09
1mbe_A	53	Mouse C-Myb Dna-Binding Domain Repeat 1 Length = 53		9e-05
1guu_A	52	Crystal Structure Of C-Myb R1 Length = 52		9e-05
2d9a_A	60	Solution Structure Of Rsgi Ruh-050, A Myb Dna-Bindi		7e-04

>pdb|1H88|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex1 Length = 159

Iteration: 1
 Score =  132 bits (333), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 61/106 (57%), Positives = 78/106 (73%)
Query: 7   NNDRIKGSWSPQEDATLIKLVEQHGPRNWSMISSGIPGRSGKSCRLRWCNQLSPTVQHRP 66
           N + IKG W+ +ED  +IKLV+++GP+ WS+I+  + GR GK CR RW N L+P V+   
Sbjct: 53  NPELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTS 112
Query: 67  FTPAEDSIIIQAHAVHGNKWATIARSLPGRTDNAIKNHWNSTLRRK 112
           +T  ED II QAH   GN+WA IA+ LPGRTDNAIKNHWNST+RRK
Sbjct: 113 WTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 158

>pdb|1GV2|A Chain A, Crystal Structure Of C-Myb R2r3 Length = 105

Iteration: 1
 Score =  131 bits (330), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 60/102 (58%), Positives = 76/102 (74%)
Query: 11  IKGSWSPQEDATLIKLVEQHGPRNWSMISSGIPGRSGKSCRLRWCNQLSPTVQHRPFTPA 70
           IKG W+ +ED  +IKLV+++GP+ WS+I+  + GR GK CR RW N L+P V+   +T  
Sbjct: 3   IKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEE 62
Query: 71  EDSIIIQAHAVHGNKWATIARSLPGRTDNAIKNHWNSTLRRK 112
           ED II QAH   GN+WA IA+ LPGRTDNAIKNHWNST+RRK
Sbjct: 63  EDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 104

>pdb|1MSE|C Chain C, Solution Structure Of A Specific Dna Complex Of The Myb Dna- Binding Domain With Cooperative Recognition Helices Length = 105

Iteration: 1
 Score =  131 bits (329), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 60/102 (58%), Positives = 76/102 (74%)
Query: 11  IKGSWSPQEDATLIKLVEQHGPRNWSMISSGIPGRSGKSCRLRWCNQLSPTVQHRPFTPA 70
           IKG W+ +ED  +IKLV+++GP+ WS+I+  + GR GK CR RW N L+P V+   +T  
Sbjct: 3   IKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEE 62
Query: 71  EDSIIIQAHAVHGNKWATIARSLPGRTDNAIKNHWNSTLRRK 112
           ED II QAH   GN+WA IA+ LPGRTDNAIKNHWNST+RRK
Sbjct: 63  EDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 104

>pdb|1A5J|A Chain A, Chicken B-Myb Dna Binding Domain, Repeat 2 And Repeat3, Nmr, 32 Structures Length = 110

Iteration: 1
 Score =  127 bits (320), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 55/104 (52%), Positives = 77/104 (74%)
Query: 9   DRIKGSWSPQEDATLIKLVEQHGPRNWSMISSGIPGRSGKSCRLRWCNQLSPTVQHRPFT 68
           D +KG W+ +ED  +I+LV+++G + W++I+  + GR GK CR RW N L+P V+   +T
Sbjct: 4   DLVKGPWTKEEDQKVIELVKKYGTKQWTLIAKHLKGRLGKQCRERWHNHLNPEVKKSSWT 63
Query: 69  PAEDSIIIQAHAVHGNKWATIARSLPGRTDNAIKNHWNSTLRRK 112
             ED II +AH V GN+WA IA+ LPGRTDNA+KNHWNST++RK
Sbjct: 64  EEEDRIIFEAHKVLGNRWAEIAKLLPGRTDNAVKNHWNSTIKRK 107

>pdb|1H8A|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex3 Length = 128

Iteration: 1
 Score =  123 bits (308), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 56/101 (55%), Positives = 73/101 (72%)
Query: 12  KGSWSPQEDATLIKLVEQHGPRNWSMISSGIPGRSGKSCRLRWCNQLSPTVQHRPFTPAE 71
           KG W+ +ED  +I+ V+++GP+ WS I+  + GR GK CR RW N L+P V+   +T  E
Sbjct: 27  KGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEE 86
Query: 72  DSIIIQAHAVHGNKWATIARSLPGRTDNAIKNHWNSTLRRK 112
           D II QAH   GN+WA IA+ LPGRTDNA+KNHWNST+RRK
Sbjct: 87  DRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNSTMRRK 127

>pdb|3ZQC|A Chain A, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding Domain Bound To A Promoter Sequence Reveals A Unique C- Terminal Beta-Hairpin Conformation Length = 131

Iteration: 1
 Score =  102 bits (254), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 46/102 (45%), Positives = 68/102 (66%)
Query: 11  IKGSWSPQEDATLIKLVEQHGPRNWSMISSGIPGRSGKSCRLRWCNQLSPTVQHRPFTPA 70
           +KG ++  ED  + + V+++GP+NW  I+S +P RS K CR RW N L P V    +TP 
Sbjct: 1   MKGPFTEAEDDLIREYVKENGPQNWPRITSFLPNRSPKQCRERWFNHLDPAVVKHAWTPE 60
Query: 71  EDSIIIQAHAVHGNKWATIARSLPGRTDNAIKNHWNSTLRRK 112
           ED  I + +   G+KW+ IA+ +PGRTDNAIKN WNS++ ++
Sbjct: 61  EDETIFRNYLKLGSKWSVIAKLIPGRTDNAIKNRWNSSISKR 102

>pdb|3OSF|A Chain A, The Structure Of Protozoan Parasite Trichomonas Vaginalis Myb2 In Complex With Mre-2f-13 Dna Length = 126

Iteration: 1
 Score = 94.4 bits (233), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 41/94 (43%), Positives = 61/94 (64%), Gaps = 1/94 (1%)
Query: 12  KGSWSPQEDATLIKLVEQHGPRNWSMISSGIPGRSGKSCRLRWCNQLSPTVQHRPFTPAE 71
           K  ++P+ED  L + V QHG  +W MI++  P R+ + CR RW N L+P++ H P+T  E
Sbjct: 11  KQKFTPEEDEMLKRAVAQHG-SDWKMIAATFPNRNARQCRDRWKNYLAPSISHTPWTAEE 69
Query: 72  DSIIIQAHAVHGNKWATIARSLPGRTDNAIKNHW 105
           D++++Q    +G +WA IA+  PGRTD  IKN W
Sbjct: 70  DALLVQKIQEYGRQWAIIAKFFPGRTDIHIKNRW 103

>pdb|2K9N|A Chain A, Solution Nmr Structure Of The R2r3 Dna Binding Domain Of Myb1 Protein From Protozoan Parasite Trichomonas Vaginalis Length = 107

Iteration: 1
 Score = 76.3 bits (186), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 34/94 (36%), Positives = 59/94 (62%)
Query: 12  KGSWSPQEDATLIKLVEQHGPRNWSMISSGIPGRSGKSCRLRWCNQLSPTVQHRPFTPAE 71
           K  ++ +ED  L +LV ++G ++W  IS  +  R+ + CR RW N ++P ++  P++P E
Sbjct: 1   KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNNYINPALRTDPWSPEE 60
Query: 72  DSIIIQAHAVHGNKWATIARSLPGRTDNAIKNHW 105
           D ++ Q +A +G KW  I++ L  R+DN I+N W
Sbjct: 61  DMLLDQKYAEYGPKWNKISKFLKNRSDNNIRNRW 94

>pdb|1MBJ|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 3 Length = 53

Iteration: 1
 Score = 73.2 bits (178), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 34/51 (66%), Positives = 39/51 (76%)
Query: 62  VQHRPFTPAEDSIIIQAHAVHGNKWATIARSLPGRTDNAIKNHWNSTLRRK 112
           V+   +T  ED II QAH   GN+WA IA+ LPGRTDNAIKNHWNST+RRK
Sbjct: 1   VKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 51

>pdb|1IDY|A Chain A, Structure Of Myb Transforming Protein, Nmr, Minimized Average Structure Length = 54

Iteration: 1
 Score = 72.8 bits (177), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 33/51 (64%), Positives = 39/51 (76%)
Query: 62  VQHRPFTPAEDSIIIQAHAVHGNKWATIARSLPGRTDNAIKNHWNSTLRRK 112
           V+   +T  ED I+ QAH   GN+WA IA+ LPGRTDNAIKNHWNST+RRK
Sbjct: 3   VKKTSWTEEEDRILYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 53

>pdb|1GVD|A Chain A, Crystal Structure Of C-Myb R2 V103l Mutant Length = 52

Iteration: 1
 Score = 63.2 bits (152), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 27/50 (54%), Positives = 37/50 (74%)
Query: 11 IKGSWSPQEDATLIKLVEQHGPRNWSMISSGIPGRSGKSCRLRWCNQLSP 60
          IKG W+ +ED  LIKLV+++GP+ WS+I+  + GR GK CR RW N L+P
Sbjct: 2  IKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNP 51

>pdb|1GV5|A Chain A, Crystal Structure Of C-Myb R2 Length = 52

Iteration: 1
 Score = 61.6 bits (148), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 26/50 (52%), Positives = 37/50 (74%)
Query: 11 IKGSWSPQEDATLIKLVEQHGPRNWSMISSGIPGRSGKSCRLRWCNQLSP 60
          IKG W+ +ED  +IKLV+++GP+ WS+I+  + GR GK CR RW N L+P
Sbjct: 2  IKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNP 51

>pdb|1MBG|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 2 Length = 53

Iteration: 1
 Score = 60.1 bits (144), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 25/50 (50%), Positives = 37/50 (74%)
Query: 11 IKGSWSPQEDATLIKLVEQHGPRNWSMISSGIPGRSGKSCRLRWCNQLSP 60
          IKG W+ +ED  +I+LV+++GP+ WS+I+  + GR GK CR RW N L+P
Sbjct: 2  IKGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNP 51

>pdb|1MBE|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 1 Length = 53

Iteration: 1
 Score = 43.9 bits (102), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 20/49 (40%), Positives = 31/49 (63%)
Query: 12 KGSWSPQEDATLIKLVEQHGPRNWSMISSGIPGRSGKSCRLRWCNQLSP 60
          K  W+ +ED  L KLVEQ+G  +W +I++ +P R+   C+ RW   L+P
Sbjct: 3  KTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNP 51

>pdb|1GUU|A Chain A, Crystal Structure Of C-Myb R1 Length = 52

Iteration: 1
 Score = 43.9 bits (102), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 20/49 (40%), Positives = 31/49 (63%)
Query: 12 KGSWSPQEDATLIKLVEQHGPRNWSMISSGIPGRSGKSCRLRWCNQLSP 60
          K  W+ +ED  L KLVEQ+G  +W +I++ +P R+   C+ RW   L+P
Sbjct: 3  KTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNP 51

>pdb|2D9A|A Chain A, Solution Structure Of Rsgi Ruh-050, A Myb Dna-Binding Domain In Mouse Cdna Length = 60

Iteration: 1
 Score = 40.8 bits (94), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 27/48 (56%)
Query: 12 KGSWSPQEDATLIKLVEQHGPRNWSMISSGIPGRSGKSCRLRWCNQLS 59
          K  W+ +ED  L  LV Q G ++W  ++S  P R+ + C+ RW   LS
Sbjct: 8  KVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVLS 55

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	255
1gv2_A	105	C-MYB, MYB proto-oncogene protein; transcription,	3e-67
1h8a_C	128	AMV V-MYB, MYB transforming protein; transcription	5e-67
3zqc_A	131	MYB3; transcription-DNA complex, DNA-binding prote	1e-65
3zqc_A	131	MYB3; transcription-DNA complex, DNA-binding prote	3e-08
2k9n_A	107	MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind	4e-62
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	2e-61
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	1e-36
3osg_A	126	MYB21; transcription-DNA complex, MYB2, R2R3 domai	5e-61
2dim_A	70	Cell division cycle 5-like protein; MYB_DNA-bindin	3e-29
2dim_A	70	Cell division cycle 5-like protein; MYB_DNA-bindin	7e-07
1gvd_A	52	MYB proto-oncogene protein; transcription, transcr	1e-28
1guu_A	52	C-MYB, MYB proto-oncogene protein; transcription,	3e-26
2d9a_A	60	B-MYB, MYB-related protein B; DNA binding, structu	7e-26
1x41_A	60	Transcriptional adaptor 2-like, isoform B; transcr	3e-11
1w0t_A	53	Telomeric repeat binding factor 1; telomere, DNA-b	4e-11
1w0t_A	53	Telomeric repeat binding factor 1; telomere, DNA-b	1e-04
1vf9_A	64	Telomeric repeat binding factor 2; MYB, helix-turn	5e-10
1vf9_A	64	Telomeric repeat binding factor 2; MYB, helix-turn	2e-04
1ity_A	69	TRF1; helix-turn-helix, telomeres, DNA binding, MY	5e-10
1ign_A	246	Protein (RAP1); RAP1,yeast,telomeres,homoeodomain,	2e-09
1ign_A	246	Protein (RAP1); RAP1,yeast,telomeres,homoeodomain,	8e-04
2din_A	66	Cell division cycle 5-like protein; MYB_DNA-bindin	2e-09
2din_A	66	Cell division cycle 5-like protein; MYB_DNA-bindin	1e-06
1w0u_A	55	Telomeric repeat binding factor 2; telomere, DNA-b	1e-08
1w0u_A	55	Telomeric repeat binding factor 2; telomere, DNA-b	1e-04
2llk_A	73	Cyclin-D-binding MYB-like transcription factor 1;	3e-07
2llk_A	73	Cyclin-D-binding MYB-like transcription factor 1;	5e-04
2ltp_A	89	Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s	8e-07
2ltp_A	89	Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s	2e-06
2yus_A	79	SWI/SNF-related matrix-associated actin- dependent	3e-06
2elk_A	58	SPCC24B10.08C protein; hypothetical protein, struc	4e-06
2roh_A	122	RTBP1, telomere binding protein-1; plant, nucleus,	6e-06
2aje_A	105	Telomere repeat-binding protein; DNA-binding, Trp,	1e-05
2cu7_A	72	KIAA1915 protein; nuclear protein, SANT domain, DN	2e-05
2cqr_A	73	RSGI RUH-043, DNAJ homolog subfamily C member 1; m	2e-05
2ckx_A	83	NGTRF1, telomere binding protein TBP1; nuclear pro	5e-05
2juh_A	121	Telomere binding protein TBP1; helix, nucleus, nuc	1e-04

>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A Length = 105

 Score =  202 bits (516), Expect = 3e-67
 Identities = 60/104 (57%), Positives = 77/104 (74%)

Query: 9   DRIKGSWSPQEDATLIKLVEQHGPRNWSMISSGIPGRSGKSCRLRWCNQLSPTVQHRPFT 68
           + IKG W+ +ED  +IKLV+++GP+ WS+I+  + GR GK CR RW N L+P V+   +T
Sbjct: 1   ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWT 60

Query: 69  PAEDSIIIQAHAVHGNKWATIARSLPGRTDNAIKNHWNSTLRRK 112
             ED II QAH   GN+WA IA+ LPGRTDNAIKNHWNST+RRK
Sbjct: 61  EEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 104

>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3 Length = 128

 Score =  202 bits (517), Expect = 5e-67
 Identities = 57/106 (53%), Positives = 75/106 (70%)

Query: 7   NNDRIKGSWSPQEDATLIKLVEQHGPRNWSMISSGIPGRSGKSCRLRWCNQLSPTVQHRP 66
           N +  KG W+ +ED  +I+ V+++GP+ WS I+  + GR GK CR RW N L+P V+   
Sbjct: 22  NPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHLNPEVKKTS 81

Query: 67  FTPAEDSIIIQAHAVHGNKWATIARSLPGRTDNAIKNHWNSTLRRK 112
           +T  ED II QAH   GN+WA IA+ LPGRTDNA+KNHWNST+RRK
Sbjct: 82  WTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNSTMRRK 127

>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis} Length = 131

 Score =  199 bits (507), Expect = 1e-65
 Identities = 46/102 (45%), Positives = 68/102 (66%)

Query: 11  IKGSWSPQEDATLIKLVEQHGPRNWSMISSGIPGRSGKSCRLRWCNQLSPTVQHRPFTPA 70
           +KG ++  ED  + + V+++GP+NW  I+S +P RS K CR RW N L P V    +TP 
Sbjct: 1   MKGPFTEAEDDLIREYVKENGPQNWPRITSFLPNRSPKQCRERWFNHLDPAVVKHAWTPE 60

Query: 71  EDSIIIQAHAVHGNKWATIARSLPGRTDNAIKNHWNSTLRRK 112
           ED  I + +   G+KW+ IA+ +PGRTDNAIKN WNS++ ++
Sbjct: 61  EDETIFRNYLKLGSKWSVIAKLIPGRTDNAIKNRWNSSISKR 102

>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis} Length = 131

 Score = 50.4 bits (121), Expect = 3e-08
 Identities = 21/82 (25%), Positives = 39/82 (47%), Gaps = 5/82 (6%)

Query: 12  KGSWSPQEDATLIKLVEQHGPRNWSMISSGIPGRSGKSCRLRWCNQLSPTVQHRPFTPAE 71
           K +W+P+ED T+ +   + G + WS+I+  IPGR+  + + RW + +S  +         
Sbjct: 54  KHAWTPEEDETIFRNYLKLGSK-WSVIAKLIPGRTDNAIKNRWNSSISKRISTNSNHKE- 111

Query: 72  DSIIIQAHAVHGNKWATIARSL 93
              I+        K A + + L
Sbjct: 112 ---ILLPDRSKKRKAADVPKKL 130

>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A Length = 107

 Score =  189 bits (483), Expect = 4e-62
 Identities = 35/102 (34%), Positives = 61/102 (59%)

Query: 12  KGSWSPQEDATLIKLVEQHGPRNWSMISSGIPGRSGKSCRLRWCNQLSPTVQHRPFTPAE 71
           K  ++ +ED  L +LV ++G ++W  IS  +  R+ + CR RW N ++P ++  P++P E
Sbjct: 1   KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNNYINPALRTDPWSPEE 60

Query: 72  DSIIIQAHAVHGNKWATIARSLPGRTDNAIKNHWNSTLRRKR 113
           D ++ Q +A +G KW  I++ L  R+DN I+N W    R + 
Sbjct: 61  DMLLDQKYAEYGPKWNKISKFLKNRSDNNIRNRWMMIARHRA 102

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Length = 159

 Score =  189 bits (483), Expect = 2e-61
 Identities = 61/109 (55%), Positives = 78/109 (71%)

Query: 4   NSNNNDRIKGSWSPQEDATLIKLVEQHGPRNWSMISSGIPGRSGKSCRLRWCNQLSPTVQ 63
              N + IKG W+ +ED  +IKLV+++GP+ WS+I+  + GR GK CR RW N L+P V+
Sbjct: 50  KVLNPELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVK 109

Query: 64  HRPFTPAEDSIIIQAHAVHGNKWATIARSLPGRTDNAIKNHWNSTLRRK 112
              +T  ED II QAH   GN+WA IA+ LPGRTDNAIKNHWNST+RRK
Sbjct: 110 KTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 158

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Length = 159

 Score =  126 bits (319), Expect = 1e-36
 Identities = 35/101 (34%), Positives = 56/101 (55%), Gaps = 1/101 (0%)

Query: 11  IKGSWSPQEDATLIKLVEQHGPRNWSMISSGIPGRSGKSCRLRWCNQLSPTVQHRPFTPA 70
            K  W+ +ED  L KLVEQ+G  +W +I++ +P R+   C+ RW   L+P +   P+T  
Sbjct: 5   GKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNPELIKGPWTKE 64

Query: 71  EDSIIIQAHAVHGNK-WATIARSLPGRTDNAIKNHWNSTLR 110
           ED  +I+    +G K W+ IA+ L GR     +  W++ L 
Sbjct: 65  EDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLN 105

>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A Length = 126

 Score =  187 bits (477), Expect = 5e-61
 Identities = 42/120 (35%), Positives = 67/120 (55%), Gaps = 1/120 (0%)

Query: 6   NNNDRIKGSWSPQEDATLIKLVEQHGPRNWSMISSGIPGRSGKSCRLRWCNQLSPTVQHR 65
           N     K  ++P+ED  L + V QHG  +W MI++  P R+ + CR RW N L+P++ H 
Sbjct: 5   NLKAAKKQKFTPEEDEMLKRAVAQHG-SDWKMIAATFPNRNARQCRDRWKNYLAPSISHT 63

Query: 66  PFTPAEDSIIIQAHAVHGNKWATIARSLPGRTDNAIKNHWNSTLRRKRMAELSSASSESN 125
           P+T  ED++++Q    +G +WA IA+  PGRTD  IKN W +   +  + +        +
Sbjct: 64  PWTAEEDALLVQKIQEYGRQWAIIAKFFPGRTDIHIKNRWVTISNKLGIPQTQQMLEHHH 123

>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70

 Score =  104 bits (261), Expect = 3e-29
 Identities = 19/67 (28%), Positives = 32/67 (47%)

Query: 5  SNNNDRIKGSWSPQEDATLIKLVEQHGPRNWSMISSGIPGRSGKSCRLRWCNQLSPTVQH 64
          S+ +    G W   ED  L   V ++G   WS I+S +  +S K C+ RW   L P+++ 
Sbjct: 2  SSGSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKK 61

Query: 65 RPFTPAE 71
            ++   
Sbjct: 62 TEWSGPS 68

>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70

 Score = 44.6 bits (106), Expect = 7e-07
 Identities = 13/53 (24%), Positives = 22/53 (41%), Gaps = 1/53 (1%)

Query: 59  SPTVQHRPFTPAEDSIIIQAHAVHG-NKWATIARSLPGRTDNAIKNHWNSTLR 110
             + +   +   ED I+  A   +G N+W+ IA  L  ++    K  W   L 
Sbjct: 4   GSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLD 56

>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A Length = 52

 Score =  102 bits (256), Expect = 1e-28
 Identities = 27/50 (54%), Positives = 37/50 (74%)

Query: 11 IKGSWSPQEDATLIKLVEQHGPRNWSMISSGIPGRSGKSCRLRWCNQLSP 60
          IKG W+ +ED  LIKLV+++GP+ WS+I+  + GR GK CR RW N L+P
Sbjct: 2  IKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNP 51

>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A Length = 52

 Score = 95.7 bits (239), Expect = 3e-26
 Identities = 20/50 (40%), Positives = 31/50 (62%)

Query: 11 IKGSWSPQEDATLIKLVEQHGPRNWSMISSGIPGRSGKSCRLRWCNQLSP 60
           K  W+ +ED  L KLVEQ+G  +W +I++ +P R+   C+ RW   L+P
Sbjct: 2  GKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNP 51

>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus} Length = 60

 Score = 95.4 bits (238), Expect = 7e-26
 Identities = 18/56 (32%), Positives = 29/56 (51%)

Query: 6  NNNDRIKGSWSPQEDATLIKLVEQHGPRNWSMISSGIPGRSGKSCRLRWCNQLSPT 61
          ++    K  W+ +ED  L  LV Q G ++W  ++S  P R+ + C+ RW   LS  
Sbjct: 2  SSGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVLSGP 57

>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Length = 60

 Score = 56.6 bits (137), Expect = 3e-11
 Identities = 11/55 (20%), Positives = 25/55 (45%)

Query: 5  SNNNDRIKGSWSPQEDATLIKLVEQHGPRNWSMISSGIPGRSGKSCRLRWCNQLS 59
           ++      SW+ QE+  L++ V   G  NW  +++ +  ++ + C   +    S
Sbjct: 1  GSSGSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFS 55

>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A Length = 53

 Score = 56.2 bits (136), Expect = 4e-11
 Identities = 13/47 (27%), Positives = 20/47 (42%), Gaps = 2/47 (4%)

Query: 12 KGSWSPQEDATLIKLVEQHGPRNWSMISSGIP--GRSGKSCRLRWCN 56
          + +W  +ED  L   V ++G  NWS I        R+    + RW  
Sbjct: 2  RQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRT 48

>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A Length = 53

 Score = 38.1 bits (89), Expect = 1e-04
 Identities = 10/54 (18%), Positives = 22/54 (40%), Gaps = 4/54 (7%)

Query: 63  QHRPFTPAEDSIIIQAHAVHGN-KWATIARSLP--GRTDNAIKNHWNSTLRRKR 113
           + + +   ED  +      +G   W+ I        RT   +K+ W  T+++ +
Sbjct: 1   KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWR-TMKKLK 53

>1vf9_A Telomeric repeat binding factor 2; MYB, helix-turn-helix, telomere, DNA binding protein; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1xg1_A 1vfc_A Length = 64

 Score = 53.2 bits (128), Expect = 5e-10
 Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 2/56 (3%)

Query: 3  SNSNNNDRIKGSWSPQEDATLIKLVEQHGPRNWSMISSGIP--GRSGKSCRLRWCN 56
           +S  N   K  W+ +E   +   V+++G  NW+ IS   P   R+    + RW  
Sbjct: 2  EDSTTNITKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRT 57

>1vf9_A Telomeric repeat binding factor 2; MYB, helix-turn-helix, telomere, DNA binding protein; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1xg1_A 1vfc_A Length = 64

 Score = 37.4 bits (87), Expect = 2e-04
 Identities = 15/62 (24%), Positives = 28/62 (45%), Gaps = 4/62 (6%)

Query: 56  NQLSPTVQHRPFTPAEDSIIIQAHAVHGN-KWATIARSLP--GRTDNAIKNHWNSTLRRK 112
           +  +   + + +T  E   +      +G   WA I+++ P   RT   IK+ W  T++R 
Sbjct: 3   DSTTNITKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWR-TMKRL 61

Query: 113 RM 114
            M
Sbjct: 62  GM 63

>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A Length = 69

 Score = 53.3 bits (128), Expect = 5e-10
 Identities = 14/49 (28%), Positives = 21/49 (42%), Gaps = 2/49 (4%)

Query: 10 RIKGSWSPQEDATLIKLVEQHGPRNWSMISSGIP--GRSGKSCRLRWCN 56
          R + +W  +ED  L   V ++G  NWS I        R+    + RW  
Sbjct: 8  RKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRT 56

>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A Length = 246

 Score = 55.8 bits (133), Expect = 2e-09
 Identities = 19/101 (18%), Positives = 40/101 (39%), Gaps = 14/101 (13%)

Query: 12  KGSWSPQEDATLIKLVEQH-----GPRNWSMISSGIPGRSGKSCRLRWCNQLSPTVQHRP 66
           K S++ +ED  ++ +V ++         +  IS  +P  +G S R R+   LS  +++  
Sbjct: 8   KASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLEYVY 67

Query: 67  FTPAEDSIIIQAHAVHGNKWATIARSLPGRTDNAIKNHWNS 107
                  ++       GN   T           +IK  +++
Sbjct: 68  EVDKFGKLV---RDDDGNLIKT------KVLPPSIKRKFSA 99

>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A Length = 246

 Score = 38.8 bits (89), Expect = 8e-04
 Identities = 12/59 (20%), Positives = 25/59 (42%), Gaps = 6/59 (10%)

Query: 60  PTVQHRPFTPAEDSIIIQAHAVHGNK------WATIARSLPGRTDNAIKNHWNSTLRRK 112
           P+     FT  ED  I+     +  +      +  I+  +P  T N+I++ +   L ++
Sbjct: 4   PSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKR 62

>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 66

 Score = 51.7 bits (124), Expect = 2e-09
 Identities = 16/61 (26%), Positives = 25/61 (40%), Gaps = 2/61 (3%)

Query: 5  SNNNDRIKGSWSPQEDATLIKLVEQHGPRNWSMISSGIPGRSGKSCRLRWCNQLSPTVQH 64
          S+ +   K  WS +E+  L+ L +   P  W  I+  I GR+   C   +   L    Q 
Sbjct: 2  SSGSSGKKTEWSREEEEKLLHLAKLM-PTQWRTIAP-IIGRTAAQCLEHYEFLLDKAAQR 59

Query: 65 R 65
           
Sbjct: 60 D 60

>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 66

 Score = 44.4 bits (105), Expect = 1e-06
 Identities = 10/50 (20%), Positives = 21/50 (42%), Gaps = 1/50 (2%)

Query: 60  PTVQHRPFTPAEDSIIIQAHAVHGNKWATIARSLPGRTDNAIKNHWNSTL 109
            + +   ++  E+  ++    +   +W TIA  + GRT      H+   L
Sbjct: 5   SSGKKTEWSREEEEKLLHLAKLMPTQWRTIA-PIIGRTAAQCLEHYEFLL 53

>1w0u_A Telomeric repeat binding factor 2; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle, nuclear protein; 1.8A {Homo sapiens} SCOP: a.4.1.4 Length = 55

 Score = 49.2 bits (118), Expect = 1e-08
 Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 2/47 (4%)

Query: 12 KGSWSPQEDATLIKLVEQHGPRNWSMISSGIP--GRSGKSCRLRWCN 56
          K  W+ +E   +   V+++G  NW+ IS   P   R+    + RW  
Sbjct: 2  KQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRT 48

>1w0u_A Telomeric repeat binding factor 2; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle, nuclear protein; 1.8A {Homo sapiens} SCOP: a.4.1.4 Length = 55

 Score = 38.1 bits (89), Expect = 1e-04
 Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 4/55 (7%)

Query: 63  QHRPFTPAEDSIIIQAHAVHGN-KWATIARSLP--GRTDNAIKNHWNSTLRRKRM 114
           + + +T  E   +      +G   WA I+++ P   RT   IK+ W  T++R  M
Sbjct: 1   KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWR-TMKRLGM 54

>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens} Length = 73

 Score = 46.1 bits (109), Expect = 3e-07
 Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 2/43 (4%)

Query: 12 KGSWSPQEDATLIKLVEQHGPRNWSMISSGIPGRSGKSCRLRW 54
           G ++P+E   L +L  +HG  +W+ I + + GRS  S + R 
Sbjct: 23 VGKYTPEEIEKLKELRIKHG-NDWATIGAAL-GRSASSVKDRC 63

>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens} Length = 73

 Score = 36.8 bits (85), Expect = 5e-04
 Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)

Query: 67  FTPAEDSIIIQAHAVHGNKWATIARSLPGRTDNAIKNHW 105
           +TP E   + +    HGN WATI  +L GR+ +++K+  
Sbjct: 26  YTPEEIEKLKELRIKHGNDWATIGAAL-GRSASSVKDRC 63

>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens} Length = 89

 Score = 45.3 bits (107), Expect = 8e-07
 Identities = 13/62 (20%), Positives = 28/62 (45%)

Query: 56  NQLSPTVQHRPFTPAEDSIIIQAHAVHGNKWATIARSLPGRTDNAIKNHWNSTLRRKRMA 115
           +     +  + +T  E     +    HG  W+ IAR +  +T +  KN + +  +R+ + 
Sbjct: 8   SSGRENLYFQGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNYKKRQNLD 67

Query: 116 EL 117
           E+
Sbjct: 68  EI 69

>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens} Length = 89

 Score = 44.2 bits (104), Expect = 2e-06
 Identities = 14/56 (25%), Positives = 27/56 (48%), Gaps = 1/56 (1%)

Query: 1  TNSNSNNNDRIKGSWSPQEDATLIKLVEQHGPRNWSMISSGIPGRSGKSCRLRWCN 56
           + +S   +     W+ +E  T  K + +HG RNWS I+  +  ++   C+  + N
Sbjct: 5  HHHSSGRENLYFQGWTEEEMGTAKKGLLEHG-RNWSAIARMVGSKTVSQCKNFYFN 59

>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens} Length = 79

 Score = 43.3 bits (102), Expect = 3e-06
 Identities = 10/51 (19%), Positives = 22/51 (43%), Gaps = 1/51 (1%)

Query: 4  NSNNNDRIKGSWSPQEDATLIKLVEQHGPRNWSMISSGIPGRSGKSCRLRW 54
            +        W+ QE   L++ +E +   +W+ +S  +  R+   C L +
Sbjct: 10 AKSKGASAGREWTEQETLLLLEALEMYK-DDWNKVSEHVGSRTQDECILHF 59

>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe} Length = 58

 Score = 42.4 bits (100), Expect = 4e-06
 Identities = 13/53 (24%), Positives = 23/53 (43%), Gaps = 1/53 (1%)

Query: 5  SNNNDRIKGSWSPQEDATLIKLVEQHGPRNWSMISSGI-PGRSGKSCRLRWCN 56
          S+ +     +W   E+  LI   E  G  NW+ I+  +   R+ + CR  +  
Sbjct: 2  SSGSSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLK 54

>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa} Length = 122

 Score = 43.6 bits (102), Expect = 6e-06
 Identities = 13/88 (14%), Positives = 28/88 (31%), Gaps = 10/88 (11%)

Query: 10  RIKGSWSPQEDATLIKLVEQHGPRNWSMI----SSGIPGRSGKSCRLRWCNQL------S 59
           RI+  ++  E   L++ VE  G   W  +       +  R+    + +W   +       
Sbjct: 29  RIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTASIAP 88

Query: 60  PTVQHRPFTPAEDSIIIQAHAVHGNKWA 87
              +  P        ++ A A      +
Sbjct: 89  QQRRGAPVPQELLDRVLAAQAYWSVDSS 116

>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3 Length = 105

 Score = 42.0 bits (98), Expect = 1e-05
 Identities = 17/101 (16%), Positives = 37/101 (36%), Gaps = 10/101 (9%)

Query: 1   TNSNSNNNDRIKGSWSPQEDATLIKLVEQHGPRNWSMI----SSGIPGRSGKSCRLRWCN 56
           ++   +   RI+  +S  E   L++ VE+ G   W  +          R+    + +W  
Sbjct: 2   SHMLEDPQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKT 61

Query: 57  -----QLSPTVQHRPFTPAE-DSIIIQAHAVHGNKWATIAR 91
                ++SP  +     P E  + ++ AH     +     +
Sbjct: 62  LVHTAKISPQQRRGEPVPQELLNRVLNAHGYWTQQQMQQLQ 102

>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Length = 72

 Score = 40.9 bits (96), Expect = 2e-05
 Identities = 10/47 (21%), Positives = 20/47 (42%), Gaps = 1/47 (2%)

Query: 5  SNNNDRIKGSWSPQEDATLIKLVEQHGPRNWSMISSGIPGRSGKSCR 51
          S+ +      W+ +E     + + + G R W+ IS  I  R+    +
Sbjct: 2  SSGSSGYSVKWTIEEKELFEQGLAKFG-RRWTKISKLIGSRTVLQVK 47

>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Length = 73

 Score = 40.6 bits (95), Expect = 2e-05
 Identities = 9/57 (15%), Positives = 21/57 (36%), Gaps = 3/57 (5%)

Query: 1  TNSNSNNNDRIKGSWSPQEDATLIKLVEQH---GPRNWSMISSGIPGRSGKSCRLRW 54
           +         +  W+  +   L   ++Q+       W  I+  +P +S + C  R+
Sbjct: 7  GSLRKERARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARY 63

>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A Length = 83

 Score = 40.0 bits (93), Expect = 5e-05
 Identities = 14/81 (17%), Positives = 28/81 (34%), Gaps = 10/81 (12%)

Query: 15 WSPQEDATLIKLVEQHGPRNWSMI----SSGIPGRSGKSCRLRWCN-----QLSPTVQHR 65
          +S  E   L++ VE  G   W  +          R+    + +W        ++P  +  
Sbjct: 3  FSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRG 62

Query: 66 PFTPAED-SIIIQAHAVHGNK 85
             P +    ++ AHA    +
Sbjct: 63 EPVPQDLLDRVLAAHAYWSQQ 83

>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa} Length = 121

 Score = 39.8 bits (92), Expect = 1e-04
 Identities = 11/51 (21%), Positives = 19/51 (37%), Gaps = 4/51 (7%)

Query: 10 RIKGSWSPQEDATLIKLVEQHGPRNWSMI----SSGIPGRSGKSCRLRWCN 56
          RI+  +S  E   L++ VE  G   W  +          R+    + +W  
Sbjct: 15 RIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKT 65

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	255
1gv2_A	105	C-MYB, MYB proto-oncogene protein; transcription,	100.0
1h8a_C	128	AMV V-MYB, MYB transforming protein; transcription	100.0
2k9n_A	107	MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind	100.0
3zqc_A	131	MYB3; transcription-DNA complex, DNA-binding prote	100.0
3osg_A	126	MYB21; transcription-DNA complex, MYB2, R2R3 domai	100.0
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	99.97
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	99.96
2dim_A	70	Cell division cycle 5-like protein; MYB_DNA-bindin	99.86
1h8a_C	128	AMV V-MYB, MYB transforming protein; transcription	99.82
1ign_A	246	Protein (RAP1); RAP1,yeast,telomeres,homoeodomain,	99.78
2d9a_A	60	B-MYB, MYB-related protein B; DNA binding, structu	99.72
2juh_A	121	Telomere binding protein TBP1; helix, nucleus, nuc	99.71
1gvd_A	52	MYB proto-oncogene protein; transcription, transcr	99.71
1ity_A	69	TRF1; helix-turn-helix, telomeres, DNA binding, MY	99.71
2llk_A	73	Cyclin-D-binding MYB-like transcription factor 1;	99.7
1guu_A	52	C-MYB, MYB proto-oncogene protein; transcription,	99.69
2roh_A	122	RTBP1, telomere binding protein-1; plant, nucleus,	99.67
2din_A	66	Cell division cycle 5-like protein; MYB_DNA-bindin	99.67
2cu7_A	72	KIAA1915 protein; nuclear protein, SANT domain, DN	99.67
3sjm_A	64	Telomeric repeat-binding factor 2; human telomeric	99.66
2din_A	66	Cell division cycle 5-like protein; MYB_DNA-bindin	99.63
1x41_A	60	Transcriptional adaptor 2-like, isoform B; transcr	99.63
2d9a_A	60	B-MYB, MYB-related protein B; DNA binding, structu	99.61
1guu_A	52	C-MYB, MYB proto-oncogene protein; transcription,	99.6
1w0t_A	53	Telomeric repeat binding factor 1; telomere, DNA-b	99.6
2elk_A	58	SPCC24B10.08C protein; hypothetical protein, struc	99.6
2cu7_A	72	KIAA1915 protein; nuclear protein, SANT domain, DN	99.58
1gvd_A	52	MYB proto-oncogene protein; transcription, transcr	99.58
1w0t_A	53	Telomeric repeat binding factor 1; telomere, DNA-b	99.57
1x41_A	60	Transcriptional adaptor 2-like, isoform B; transcr	99.55
1ity_A	69	TRF1; helix-turn-helix, telomeres, DNA binding, MY	99.55
2yum_A	75	ZZZ3 protein, zinc finger ZZ-type-containing prote	99.55
2llk_A	73	Cyclin-D-binding MYB-like transcription factor 1;	99.53
2dim_A	70	Cell division cycle 5-like protein; MYB_DNA-bindin	99.53
3zqc_A	131	MYB3; transcription-DNA complex, DNA-binding prote	99.52
2yum_A	75	ZZZ3 protein, zinc finger ZZ-type-containing prote	99.51
2elk_A	58	SPCC24B10.08C protein; hypothetical protein, struc	99.5
3sjm_A	64	Telomeric repeat-binding factor 2; human telomeric	99.49
2ltp_A	89	Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s	99.22
2aje_A	105	Telomere repeat-binding protein; DNA-binding, Trp,	99.45
1gv2_A	105	C-MYB, MYB proto-oncogene protein; transcription,	99.43
2ckx_A	83	NGTRF1, telomere binding protein TBP1; nuclear pro	99.43
2ltp_A	89	Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s	99.12
2cqr_A	73	RSGI RUH-043, DNAJ homolog subfamily C member 1; m	99.4
2yus_A	79	SWI/SNF-related matrix-associated actin- dependent	99.39
2cqr_A	73	RSGI RUH-043, DNAJ homolog subfamily C member 1; m	99.37
2k9n_A	107	MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind	99.34
2yus_A	79	SWI/SNF-related matrix-associated actin- dependent	99.34
3osg_A	126	MYB21; transcription-DNA complex, MYB2, R2R3 domai	99.33
1x58_A	62	Hypothetical protein 4930532D21RIK; MUS musculus a	99.3
2ckx_A	83	NGTRF1, telomere binding protein TBP1; nuclear pro	99.27
2aje_A	105	Telomere repeat-binding protein; DNA-binding, Trp,	99.23
2juh_A	121	Telomere binding protein TBP1; helix, nucleus, nuc	99.22
2cjj_A	93	Radialis; plant development, DNA-binding protein,	99.2
1ign_A	246	Protein (RAP1); RAP1,yeast,telomeres,homoeodomain,	99.19
2roh_A	122	RTBP1, telomere binding protein-1; plant, nucleus,	99.13
2cjj_A	93	Radialis; plant development, DNA-binding protein,	99.13
2eqr_A	61	N-COR1, N-COR, nuclear receptor corepressor 1; SAN	99.0
2eqr_A	61	N-COR1, N-COR, nuclear receptor corepressor 1; SAN	99.0
1x58_A	62	Hypothetical protein 4930532D21RIK; MUS musculus a	98.96
3hm5_A	93	DNA methyltransferase 1-associated protein 1; DNA	98.87
2xag_B	482	REST corepressor 1; amine oxidase, chromatin regul	98.81
2cqq_A	72	RSGI RUH-037, DNAJ homolog subfamily C member 1; m	98.78
2iw5_B	235	Protein corest, REST corepressor 1; oxidoreductase	98.75
2cqq_A	72	RSGI RUH-037, DNAJ homolog subfamily C member 1; m	98.71
1wgx_A	73	KIAA1903 protein; MYB DNA-binding domain, human cD	98.57
2iw5_B	235	Protein corest, REST corepressor 1; oxidoreductase	98.51
1wgx_A	73	KIAA1903 protein; MYB DNA-binding domain, human cD	98.51
1fex_A	59	TRF2-interacting telomeric RAP1 protein; helix tur	98.45
1fex_A	59	TRF2-interacting telomeric RAP1 protein; helix tur	98.43
1ofc_X	304	ISWI protein; nuclear protein, chromatin remodelin	98.27
4eef_G	74	F-HB80.4, designed hemagglutinin binding protein;	98.25
2yqk_A	63	Arginine-glutamic acid dipeptide repeats protein;	98.24
2yqk_A	63	Arginine-glutamic acid dipeptide repeats protein;	98.18
4eef_G	74	F-HB80.4, designed hemagglutinin binding protein;	98.06
1ug2_A	95	2610100B20RIK gene product; hypothetical protein,	97.98
2lr8_A	70	CAsp8-associated protein 2; structural genomics, n	97.12
2crg_A	70	Metastasis associated protein MTA3; transcription	97.82
4a69_C	94	Nuclear receptor corepressor 2; transcription, hyd	97.75
4iej_A	93	DNA methyltransferase 1-associated protein 1; DNA	97.74
2crg_A	70	Metastasis associated protein MTA3; transcription	97.71
4a69_C	94	Nuclear receptor corepressor 2; transcription, hyd	97.69
2xag_B	482	REST corepressor 1; amine oxidase, chromatin regul	97.68
3hm5_A	93	DNA methyltransferase 1-associated protein 1; DNA	97.34
2ebi_A	86	DNA binding protein GT-1; DNA-binding domain, phos	97.11
2y9y_A	374	Imitation switch protein 1 (DEL_ATPase); transcrip	97.08
4b4c_A	211	Chromodomain-helicase-DNA-binding protein 1; chrom	97.04
2lr8_A	70	CAsp8-associated protein 2; structural genomics, n	95.95
2ebi_A	86	DNA binding protein GT-1; DNA-binding domain, phos	96.8
1ug2_A	95	2610100B20RIK gene product; hypothetical protein,	96.2
1irz_A	64	ARR10-B; helix-turn-helix, DNA binding protein; NM	95.37
4iej_A	93	DNA methyltransferase 1-associated protein 1; DNA	93.39
1ofc_X	304	ISWI protein; nuclear protein, chromatin remodelin	92.88
1irz_A	64	ARR10-B; helix-turn-helix, DNA binding protein; NM	91.78
4b4c_A	211	Chromodomain-helicase-DNA-binding protein 1; chrom	90.39
2xb0_X	270	Chromo domain-containing protein 1; hydrolase, DNA	90.12
2xb0_X	270	Chromo domain-containing protein 1; hydrolase, DNA	86.83

>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A

Probab=100.00  E-value=9.3e-35  Score=227.08  Aligned_cols=104  Identities=58%  Similarity=1.048  Sum_probs=99.7

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCCChhhhccCCCCCCcccccccccccCCCCccCCCCChhhHHHHHHHHHHcCCchhh
Q 046570            9 DRIKGSWSPQEDATLIKLVEQHGPRNWSMISSGIPGRSGKSCRLRWCNQLSPTVQHRPFTPAEDSIIIQAHAVHGNKWAT   88 (255)
Q Consensus         9 ~~~kg~WT~eED~~L~~lv~~~G~~~W~~IA~~lpgRt~~qCr~Rw~~~L~p~l~k~~WT~eED~~Ll~~v~~~G~~W~~   88 (255)
                      .+++|+||++||++|+.+|.+||..+|..||..|||||+.||+.||.++|+|.+++++||++||.+|++++.+||++|..
T Consensus         1 ~l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~   80 (105)
T 1gv2_A            1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAE   80 (105)
T ss_dssp             CCCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHHHHHHHSSCHHH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhcCCCHHHHHHHHHhccCCcccccCCCHHHHHHHHHHHHHhCCCHHH
Confidence            46899999999999999999999888999999999999999999999999999999999999999999999999999999


Q ss_pred             hhccCCCCCHHHHHHHHHHHHHhH
Q 046570           89 IARSLPGRTDNAIKNHWNSTLRRK  112 (255)
Q Consensus        89 IA~~~pgRT~~qcknRw~~llr~k  112 (255)
                      ||.+|||||+++|++||+.+++++
T Consensus        81 Ia~~l~gRt~~~~k~rw~~~~~~~  104 (105)
T 1gv2_A           81 IAKLLPGRTDNAIKNHWNSTMRRK  104 (105)
T ss_dssp             HHTTCTTCCHHHHHHHHHHHTC--
T ss_pred             HHHHcCCCCHHHHHHHHHHHHhcc
Confidence            999999999999999999999876

>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3

Probab=100.00  E-value=1.4e-34  Score=233.87  Aligned_cols=111  Identities=51%  Similarity=0.911  Sum_probs=103.4

Q ss_pred             CCCCCCCCCCCCCCCHHHHHHHHHHHHHhCCCChhhhccCCCCCCcccccccccccCCCCccCCCCChhhHHHHHHHHHH
Q 046570            2 NSNSNNNDRIKGSWSPQEDATLIKLVEQHGPRNWSMISSGIPGRSGKSCRLRWCNQLSPTVQHRPFTPAEDSIIIQAHAV   81 (255)
Q Consensus         2 ~sn~l~~~~~kg~WT~eED~~L~~lv~~~G~~~W~~IA~~lpgRt~~qCr~Rw~~~L~p~l~k~~WT~eED~~Ll~~v~~   81 (255)
                      ..++|+|.+++|+||++||++|+.+|..||..+|..||.+|||||+.||+.||.++|+|.+++++||++||.+|++++.+
T Consensus        17 w~~~l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~   96 (128)
T 1h8a_C           17 WQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKR   96 (128)
T ss_dssp             -----CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHHHHTTCSSSCCSCCCHHHHHHHHHHHHH
T ss_pred             HHHhhCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcCCcHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHH
Confidence            34679999999999999999999999999988899999999999999999999999999999999999999999999999


Q ss_pred             cCCchhhhhccCCCCCHHHHHHHHHHHHHhH
Q 046570           82 HGNKWATIARSLPGRTDNAIKNHWNSTLRRK  112 (255)
Q Consensus        82 ~G~~W~~IA~~~pgRT~~qcknRw~~llr~k  112 (255)
                      ||++|..||.+|||||+++|++||+.+++++
T Consensus        97 ~G~~W~~Ia~~l~gRt~~~~k~r~~~~~~~~  127 (128)
T 1h8a_C           97 LGNRWAEIAKLLPGRTDNAVKNHWNSTMRRK  127 (128)
T ss_dssp             HCSCHHHHGGGSTTCCHHHHHHHHHTTTTC-
T ss_pred             HCcCHHHHHHHCCCCCHHHHHHHHHHHHhcc
Confidence            9999999999999999999999999998875

>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A

Probab=100.00  E-value=1.1e-34  Score=228.00  Aligned_cols=104  Identities=34%  Similarity=0.634  Sum_probs=100.3

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCChhhhccCCCCCCcccccccccccCCCCccCCCCChhhHHHHHHHHHHcCCchhhhhc
Q 046570           12 KGSWSPQEDATLIKLVEQHGPRNWSMISSGIPGRSGKSCRLRWCNQLSPTVQHRPFTPAEDSIIIQAHAVHGNKWATIAR   91 (255)
Q Consensus        12 kg~WT~eED~~L~~lv~~~G~~~W~~IA~~lpgRt~~qCr~Rw~~~L~p~l~k~~WT~eED~~Ll~~v~~~G~~W~~IA~   91 (255)
                      ||+||++||++|+.+|..||..+|..||..|||||+.||++||.++|+|.+++++||++||.+|+++|.+||++|..||.
T Consensus         1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~~L~~~~~~~G~~W~~Ia~   80 (107)
T 2k9n_A            1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNNYINPALRTDPWSPEEDMLLDQKYAEYGPKWNKISK   80 (107)
T ss_dssp             CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTTTSCHHHHHHHHHHHSSSCCTTCCCCHHHHHHHHHHHHHTCSCHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcCCCCHHHHHHHHHHHHcccccccccCHHHHHHHHHHHHHhCcCHHHHHH
Confidence            68999999999999999999889999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHHHHHHHHHhHHHh
Q 046570           92 SLPGRTDNAIKNHWNSTLRRKRMA  115 (255)
Q Consensus        92 ~~pgRT~~qcknRw~~llr~k~~~  115 (255)
                      +|||||+++|++||+.++++....
T Consensus        81 ~l~gRt~~~~k~rw~~l~r~~~~~  104 (107)
T 2k9n_A           81 FLKNRSDNNIRNRWMMIARHRAKH  104 (107)
T ss_dssp             HHSSSCHHHHHHHHHHHHHHHHSS
T ss_pred             HCCCCCHHHHHHHHHHHHhhHHHh
Confidence            999999999999999999886543

>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}

Probab=100.00  E-value=1.4e-33  Score=229.10  Aligned_cols=104  Identities=44%  Similarity=0.853  Sum_probs=100.8

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCChhhhccCCCCCCcccccccccccCCCCccCCCCChhhHHHHHHHHHHcCCchhhhh
Q 046570           11 IKGSWSPQEDATLIKLVEQHGPRNWSMISSGIPGRSGKSCRLRWCNQLSPTVQHRPFTPAEDSIIIQAHAVHGNKWATIA   90 (255)
Q Consensus        11 ~kg~WT~eED~~L~~lv~~~G~~~W~~IA~~lpgRt~~qCr~Rw~~~L~p~l~k~~WT~eED~~Ll~~v~~~G~~W~~IA   90 (255)
                      .||+||++||++|+.+|..||..+|..||..|||||+.||++||.++|+|.+++++||++||.+|+++|.+||++|+.||
T Consensus         1 vKg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~Ia   80 (131)
T 3zqc_A            1 MKGPFTEAEDDLIREYVKENGPQNWPRITSFLPNRSPKQCRERWFNHLDPAVVKHAWTPEEDETIFRNYLKLGSKWSVIA   80 (131)
T ss_dssp             CCSSCCHHHHHHHHHHHHHHCSCCGGGGTTSCTTSCHHHHHHHHHHHTSTTCCCSCCCHHHHHHHHHHHHHSCSCHHHHT
T ss_pred             CCCCCCHHHHHHHHHHHHHhCcCCHHHHHHHHCCCCHHHHHHHHhhccCccccCCCCCHHHHHHHHHHHHHHCcCHHHHH
Confidence            48999999999999999999988999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCHHHHHHHHHHHHHhHHH
Q 046570           91 RSLPGRTDNAIKNHWNSTLRRKRM  114 (255)
Q Consensus        91 ~~~pgRT~~qcknRw~~llr~k~~  114 (255)
                      .+|||||+++|++||+.+++++..
T Consensus        81 ~~l~gRt~~~~k~rw~~~l~~~~~  104 (131)
T 3zqc_A           81 KLIPGRTDNAIKNRWNSSISKRIS  104 (131)
T ss_dssp             TTSTTCCHHHHHHHHHHTTGGGCC
T ss_pred             HHcCCCCHHHHHHHHHHHHHHHhh
Confidence            999999999999999999988754

>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A

Probab=100.00  E-value=3.3e-33  Score=225.55  Aligned_cols=105  Identities=39%  Similarity=0.780  Sum_probs=101.0

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCChhhhccCCCCCCcccccccccccCCCCccCCCCChhhHHHHHHHHHHcCCch
Q 046570            7 NNDRIKGSWSPQEDATLIKLVEQHGPRNWSMISSGIPGRSGKSCRLRWCNQLSPTVQHRPFTPAEDSIIIQAHAVHGNKW   86 (255)
Q Consensus         7 ~~~~~kg~WT~eED~~L~~lv~~~G~~~W~~IA~~lpgRt~~qCr~Rw~~~L~p~l~k~~WT~eED~~Ll~~v~~~G~~W   86 (255)
                      .+..++|+||++||++|+.+|..||. +|..||..||||++.||++||.++|+|.+++++||++||++|+++|.+||++|
T Consensus         6 ~~~~kk~~WT~eED~~L~~~v~~~G~-~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~v~~~G~~W   84 (126)
T 3osg_A            6 LKAAKKQKFTPEEDEMLKRAVAQHGS-DWKMIAATFPNRNARQCRDRWKNYLAPSISHTPWTAEEDALLVQKIQEYGRQW   84 (126)
T ss_dssp             -CBCSSCCCCHHHHHHHHHHHHHHTT-CHHHHHHTCTTCCHHHHHHHHHHHTSTTSCCSCCCHHHHHHHHHHHHHHCSCH
T ss_pred             cCCCCCCCCCHHHHHHHHHHHHHhCC-CHHHHHHHcCCCCHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHCcCH
Confidence            46789999999999999999999996 89999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhccCCCCCHHHHHHHHHHHHHhH
Q 046570           87 ATIARSLPGRTDNAIKNHWNSTLRRK  112 (255)
Q Consensus        87 ~~IA~~~pgRT~~qcknRw~~llr~k  112 (255)
                      ..||..|||||+++|++||..++++.
T Consensus        85 ~~Ia~~l~gRt~~~~k~rw~~l~~k~  110 (126)
T 3osg_A           85 AIIAKFFPGRTDIHIKNRWVTISNKL  110 (126)
T ss_dssp             HHHHTTSTTCCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHcCCCCHHHHHHHHHHHHHhc
Confidence            99999999999999999999988765

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C

Probab=99.97  E-value=2.2e-32  Score=228.34  Aligned_cols=110  Identities=55%  Similarity=0.991  Sum_probs=106.0

Q ss_pred             CCCCCCCCCCCCCCHHHHHHHHHHHHHhCCCChhhhccCCCCCCcccccccccccCCCCccCCCCChhhHHHHHHHHHHc
Q 046570            3 SNSNNNDRIKGSWSPQEDATLIKLVEQHGPRNWSMISSGIPGRSGKSCRLRWCNQLSPTVQHRPFTPAEDSIIIQAHAVH   82 (255)
Q Consensus         3 sn~l~~~~~kg~WT~eED~~L~~lv~~~G~~~W~~IA~~lpgRt~~qCr~Rw~~~L~p~l~k~~WT~eED~~Ll~~v~~~   82 (255)
                      -++|+|.+++|+||++||.+|+.+|..||+.+|..||.+|||||+.||+.||.++|+|.+++++||++||.+|++++.+|
T Consensus        49 ~~~l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~~  128 (159)
T 1h89_C           49 QKVLNPELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRL  128 (159)
T ss_dssp             HTTTCTTCCCSCCCHHHHHHHHHHHHHHCSCCHHHHHHTSTTCCHHHHHHHHHHTTCTTSCCSCCCHHHHHHHHHHHHHH
T ss_pred             HHccCCCcCCCCCChHHHHHHHHHHHHhCcccHHHHHHHcCCCCHHHHHHHHHHHhCccccccCCChHHHHHHHHHHHHH
Confidence            36799999999999999999999999999878999999999999999999999999999999999999999999999999


Q ss_pred             CCchhhhhccCCCCCHHHHHHHHHHHHHhH
Q 046570           83 GNKWATIARSLPGRTDNAIKNHWNSTLRRK  112 (255)
Q Consensus        83 G~~W~~IA~~~pgRT~~qcknRw~~llr~k  112 (255)
                      |++|+.||++|||||+++|++||+.+++++
T Consensus       129 g~~W~~Ia~~l~gRt~~~~knr~~~~~r~~  158 (159)
T 1h89_C          129 GNRWAEIAKLLPGRTDNAIKNHWNSTMRRK  158 (159)
T ss_dssp             CSCHHHHHTTSTTCCHHHHHHHHHTTTCC-
T ss_pred             CCCHHHHHHHCCCCCHHHHHHHHHHHHhcc
Confidence            999999999999999999999999998875

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C

Probab=99.96  E-value=5.1e-30  Score=214.03  Aligned_cols=104  Identities=33%  Similarity=0.683  Sum_probs=61.0

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCCChhhhccCCCCCCcccccccccccCCCCccCCCCChhhHHHHHHHHHHcCC-chh
Q 046570            9 DRIKGSWSPQEDATLIKLVEQHGPRNWSMISSGIPGRSGKSCRLRWCNQLSPTVQHRPFTPAEDSIIIQAHAVHGN-KWA   87 (255)
Q Consensus         9 ~~~kg~WT~eED~~L~~lv~~~G~~~W~~IA~~lpgRt~~qCr~Rw~~~L~p~l~k~~WT~eED~~Ll~~v~~~G~-~W~   87 (255)
                      .+.+|+||++||++|+++|.+||..+|..||..||+|++.||+.||.++|+|.+++++||++||.+|+.+|..||. +|.
T Consensus         3 ~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W~   82 (159)
T 1h89_C            3 HLGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNPELIKGPWTKEEDQRVIKLVQKYGPKRWS   82 (159)
T ss_dssp             ----------------------------------------CHHHHHHTTTCTTCCCSCCCHHHHHHHHHHHHHHCSCCHH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHccCCCcCCCCCChHHHHHHHHHHHHhCcccHH
Confidence            4679999999999999999999988999999999999999999999999999999999999999999999999996 699


Q ss_pred             hhhccCCCCCHHHHHHHHHHHHHhH
Q 046570           88 TIARSLPGRTDNAIKNHWNSTLRRK  112 (255)
Q Consensus        88 ~IA~~~pgRT~~qcknRw~~llr~k  112 (255)
                      .||..|||||+.||++||..++...
T Consensus        83 ~Ia~~l~~Rt~~qcr~Rw~~~l~p~  107 (159)
T 1h89_C           83 VIAKHLKGRIGKQCRERWHNHLNPE  107 (159)
T ss_dssp             HHHHTSTTCCHHHHHHHHHHTTCTT
T ss_pred             HHHHHcCCCCHHHHHHHHHHHhCcc
Confidence            9999999999999999999987643

>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.86  E-value=7.4e-23  Score=149.04  Aligned_cols=68  Identities=28%  Similarity=0.561  Sum_probs=65.6

Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHhCCCChhhhccCCCCCCcccccccccccCCCCccCCCCChhhH
Q 046570            5 SNNNDRIKGSWSPQEDATLIKLVEQHGPRNWSMISSGIPGRSGKSCRLRWCNQLSPTVQHRPFTPAED   72 (255)
Q Consensus         5 ~l~~~~~kg~WT~eED~~L~~lv~~~G~~~W~~IA~~lpgRt~~qCr~Rw~~~L~p~l~k~~WT~eED   72 (255)
                      +..+.+++|+||++||++|+.+|.+||..+|..||.+|++||+.||+.||.++|+|.+++++||++||
T Consensus         2 ss~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr~Rw~~~L~p~i~~~~wt~eEd   69 (70)
T 2dim_A            2 SSGSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWSGPSS   69 (70)
T ss_dssp             CSCSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTTCCHHHHHHHHHHTSCSSSCCCCSCCSCC
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcCCCHHHHHHHHHHHcCCcccCCCCChHhc
Confidence            46788999999999999999999999988999999999999999999999999999999999999998

>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3

Probab=99.82  E-value=3.4e-21  Score=155.23  Aligned_cols=74  Identities=28%  Similarity=0.638  Sum_probs=50.6

Q ss_pred             hccCCCCCCcccccccccccCCCCccCCCCChhhHHHHHHHHHHcCC-chhhhhccCCCCCHHHHHHHHHHHHHh
Q 046570           38 ISSGIPGRSGKSCRLRWCNQLSPTVQHRPFTPAEDSIIIQAHAVHGN-KWATIARSLPGRTDNAIKNHWNSTLRR  111 (255)
Q Consensus        38 IA~~lpgRt~~qCr~Rw~~~L~p~l~k~~WT~eED~~Ll~~v~~~G~-~W~~IA~~~pgRT~~qcknRw~~llr~  111 (255)
                      ||..|||||+.||+.||.++|+|.+++++||++||++|+++|.+||. +|..||..|||||+.||++||..++..
T Consensus         1 Ia~~~~~Rt~~qC~~Rw~~~l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p   75 (128)
T 1h8a_C            1 MEAVIKNRTDVQCQHRWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHLNP   75 (128)
T ss_dssp             ---------------------CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHHHHTTCS
T ss_pred             CccccCCCCHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcCCcHHHHHHHHHHhccc
Confidence            78999999999999999999999999999999999999999999996 699999999999999999999988764

>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A

Probab=99.78  E-value=2.1e-19  Score=158.02  Aligned_cols=105  Identities=25%  Similarity=0.369  Sum_probs=92.7

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCCCC-----hhhhccCCCCCCcccccccccccCCCCcc-------------------
Q 046570            8 NDRIKGSWSPQEDATLIKLVEQHGPRN-----WSMISSGIPGRSGKSCRLRWCNQLSPTVQ-------------------   63 (255)
Q Consensus         8 ~~~~kg~WT~eED~~L~~lv~~~G~~~-----W~~IA~~lpgRt~~qCr~Rw~~~L~p~l~-------------------   63 (255)
                      +.+.+++||++||+.|+++|.+||...     |..||.+|||||+.||+.||..+|.+.+.                   
T Consensus         4 ~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~L~~~ln~vy~~ded~~Li~d~~Gn~   83 (246)
T 1ign_A            4 PSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVRDDDGNL   83 (246)
T ss_dssp             ----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCCCEECBCTTSCBCBCTTSCB
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHHHhhhcccccccCcchhhhhccCCCc
Confidence            567899999999999999999998532     99999999999999999999999999986                   


Q ss_pred             ----------CCCCChhhHHHHHHHHHH-c--------------------------------------------------
Q 046570           64 ----------HRPFTPAEDSIIIQAHAV-H--------------------------------------------------   82 (255)
Q Consensus        64 ----------k~~WT~eED~~Ll~~v~~-~--------------------------------------------------   82 (255)
                                +..||.+||-.|+..+++ |                                                  
T Consensus        84 ikis~lp~siK~rftaeeDy~L~~~i~~~f~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~  163 (246)
T 1ign_A           84 IKTKVLPPSIKRKFSADEDYTLAIAVKKQFYRDLFQIDPDTGRSLITDEDTPTAIARRNMTMDPNHVPGSEPNFAAYRTQ  163 (246)
T ss_dssp             CEESSCCCCSCCCCCHHHHHHHHHHHHHHHHHHHHCBCSSSCCBCC-------------------------------CCC
T ss_pred             eeeeccCccccCccchhccHHHHHHHHHHHhhhhhhcCccccccccccccchhhhhhhhcccCccccccCCcchhhhccc
Confidence                      789999999999999876 1                                                  


Q ss_pred             ---CC----chhhhhccCCCCCHHHHHHHHHHHHHhH
Q 046570           83 ---GN----KWATIARSLPGRTDNAIKNHWNSTLRRK  112 (255)
Q Consensus        83 ---G~----~W~~IA~~~pgRT~~qcknRw~~llr~k  112 (255)
                         |.    .|..||..+|+||.+++|+||..+++..
T Consensus       164 ~~~gp~~~~~fk~ia~~~P~HT~~SWRdRyrKfl~~~  200 (246)
T 1ign_A          164 SRRGPIAREFFKHFAEEHAAHTENAWRDRFRKFLLAY  200 (246)
T ss_dssp             CCCCCCCTTHHHHHHHHTTTSCHHHHHHHHHHTHHHH
T ss_pred             cccCcchHHHHHHHHHHCCCCChhhHHHHHHHHHhhc
Confidence               11    6999999999999999999999998776

>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}

Probab=99.72  E-value=1.7e-18  Score=122.15  Aligned_cols=58  Identities=31%  Similarity=0.661  Sum_probs=55.0

Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHhCCCChhhhccCCCCCCcccccccccccCCCCcc
Q 046570            6 NNNDRIKGSWSPQEDATLIKLVEQHGPRNWSMISSGIPGRSGKSCRLRWCNQLSPTVQ   63 (255)
Q Consensus         6 l~~~~~kg~WT~eED~~L~~lv~~~G~~~W~~IA~~lpgRt~~qCr~Rw~~~L~p~l~   63 (255)
                      .+|.+++++||++||++|+++|.+||..+|..||.+||+||+.||+.||.++|+|.++
T Consensus         2 s~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~i~   59 (60)
T 2d9a_A            2 SSGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVLSGPSS   59 (60)
T ss_dssp             CSCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHHHHTSCSSSC
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccCCCHHHHHHHHHHHcCCccC
Confidence            3578999999999999999999999988999999999999999999999999999875

>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}

Probab=99.71  E-value=2.1e-18  Score=138.16  Aligned_cols=84  Identities=19%  Similarity=0.305  Sum_probs=78.7

Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHhCCCChhhhccC----CCCCCcccccccccccCC-----CCccCC-CCChhhHHH
Q 046570            5 SNNNDRIKGSWSPQEDATLIKLVEQHGPRNWSMISSG----IPGRSGKSCRLRWCNQLS-----PTVQHR-PFTPAEDSI   74 (255)
Q Consensus         5 ~l~~~~~kg~WT~eED~~L~~lv~~~G~~~W~~IA~~----lpgRt~~qCr~Rw~~~L~-----p~l~k~-~WT~eED~~   74 (255)
                      -+.+.+++++||++||+.|+.+|.+||.++|..|+..    |++||+.+|++||+++++     |.++++ +|+++++.+
T Consensus        10 ~~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~~~~p~~krg~~~p~e~~~r   89 (121)
T 2juh_A           10 ELSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDR   89 (121)
T ss_dssp             CCCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHHHTCSTTCCCSCCCHHHHHH
T ss_pred             cccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhhhccCCcccCCCCCCHHHHHH
Confidence            3567899999999999999999999998899999987    499999999999999998     999998 999999999


Q ss_pred             HHHHHHHcCCchhh
Q 046570           75 IIQAHAVHGNKWAT   88 (255)
Q Consensus        75 Ll~~v~~~G~~W~~   88 (255)
                      |+.++..+|++|.+
T Consensus        90 v~~~h~~~gn~~~~  103 (121)
T 2juh_A           90 VLAAHAYWSQQQGK  103 (121)
T ss_dssp             HHHHHHHHHHHHCC
T ss_pred             HHHHHHHHccchhc
Confidence            99999999999987

>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A

Probab=99.71  E-value=4.5e-18  Score=116.70  Aligned_cols=52  Identities=52%  Similarity=1.059  Sum_probs=49.6

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCChhhhccCCCCCCcccccccccccCCCC
Q 046570           10 RIKGSWSPQEDATLIKLVEQHGPRNWSMISSGIPGRSGKSCRLRWCNQLSPT   61 (255)
Q Consensus        10 ~~kg~WT~eED~~L~~lv~~~G~~~W~~IA~~lpgRt~~qCr~Rw~~~L~p~   61 (255)
                      +++|+||++||.+|+.+|.+||..+|..||..|+|||+.||+.||.++|+|.
T Consensus         1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P~   52 (52)
T 1gvd_A            1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPE   52 (52)
T ss_dssp             CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTSCC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHHHHHcCcC
Confidence            4789999999999999999999878999999999999999999999999984

>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A

Probab=99.71  E-value=2.9e-18  Score=124.37  Aligned_cols=65  Identities=22%  Similarity=0.280  Sum_probs=60.5

Q ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHHhCCCChhhhccCCC--CCCcccccccccccCCCCccCCCCC
Q 046570            4 NSNNNDRIKGSWSPQEDATLIKLVEQHGPRNWSMISSGIP--GRSGKSCRLRWCNQLSPTVQHRPFT   68 (255)
Q Consensus         4 n~l~~~~~kg~WT~eED~~L~~lv~~~G~~~W~~IA~~lp--gRt~~qCr~Rw~~~L~p~l~k~~WT   68 (255)
                      +...+.+++++||++||.+|+.+|.+||.++|..||..|+  |||+.||++||.++|+|.+.++..+
T Consensus         2 ~~~~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k~~~~   68 (69)
T 1ity_A            2 PEKHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLISSDSE   68 (69)
T ss_dssp             -CTTCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCCCCCC
T ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCCCCCC
Confidence            5667899999999999999999999999889999999999  9999999999999999999988764

>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}

Probab=99.70  E-value=4.5e-18  Score=125.08  Aligned_cols=60  Identities=23%  Similarity=0.317  Sum_probs=47.8

Q ss_pred             ccccccccCCCCccCCCCChhhHHHHHHHHHHcCCchhhhhccCCCCCHHHHHHHHHHHHH
Q 046570           50 CRLRWCNQLSPTVQHRPFTPAEDSIIIQAHAVHGNKWATIARSLPGRTDNAIKNHWNSTLR  110 (255)
Q Consensus        50 Cr~Rw~~~L~p~l~k~~WT~eED~~Ll~~v~~~G~~W~~IA~~~pgRT~~qcknRw~~llr  110 (255)
                      ..-||.++|+|.+++++||+|||++|++++.+||++|+.||+.| |||+++||+||+.+.+
T Consensus         9 ~~~~~~~~ldP~i~k~~wT~EED~~L~~l~~~~G~kW~~IA~~l-gRt~~q~knRw~~L~~   68 (73)
T 2llk_A            9 SGRENLYFQGDRNHVGKYTPEEIEKLKELRIKHGNDWATIGAAL-GRSASSVKDRCRLMKD   68 (73)
T ss_dssp             ----------CCCCCCSSCHHHHHHHHHHHHHHSSCHHHHHHHH-TSCHHHHHHHHHHCSC
T ss_pred             cCcceeeecCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHh-CCCHHHHHHHHHHHHH
Confidence            45689999999999999999999999999999999999999999 9999999999987543

>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A

Probab=99.69  E-value=6.5e-18  Score=115.80  Aligned_cols=52  Identities=38%  Similarity=0.779  Sum_probs=48.3

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCChhhhccCCCCCCcccccccccccCCCC
Q 046570           10 RIKGSWSPQEDATLIKLVEQHGPRNWSMISSGIPGRSGKSCRLRWCNQLSPT   61 (255)
Q Consensus        10 ~~kg~WT~eED~~L~~lv~~~G~~~W~~IA~~lpgRt~~qCr~Rw~~~L~p~   61 (255)
                      +++|+||++||.+|+.+|.+||..+|..||..|||||+.||+.||.++|+|+
T Consensus         1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P~   52 (52)
T 1guu_A            1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNPE   52 (52)
T ss_dssp             --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHSCC
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHHcCcC
Confidence            4789999999999999999999779999999999999999999999999984

>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}

Probab=99.67  E-value=2.5e-17  Score=132.03  Aligned_cols=79  Identities=19%  Similarity=0.322  Sum_probs=73.4

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCChhhhccC----CCCCCcccccccccccC-----CCCccCCCCChhh-HHHHH
Q 046570            7 NNDRIKGSWSPQEDATLIKLVEQHGPRNWSMISSG----IPGRSGKSCRLRWCNQL-----SPTVQHRPFTPAE-DSIII   76 (255)
Q Consensus         7 ~~~~~kg~WT~eED~~L~~lv~~~G~~~W~~IA~~----lpgRt~~qCr~Rw~~~L-----~p~l~k~~WT~eE-D~~Ll   76 (255)
                      ...+++++||++||+.|+.+|.+||.++|..|+..    |++||+.||++||++++     +|.++++.|+++| +.+|+
T Consensus        26 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~~~~p~~kr~~~~p~e~~~~v~  105 (122)
T 2roh_A           26 GQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTASIAPQQRRGAPVPQELLDRVL  105 (122)
T ss_dssp             CCCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHHHSCTTTCCCSSCCHHHHHHHH
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCccccCCCCCCHHHHHHHH
Confidence            45788999999999999999999998899999985    48999999999999999     8999999999999 89999


Q ss_pred             HHHHHcCCc
Q 046570           77 QAHAVHGNK   85 (255)
Q Consensus        77 ~~v~~~G~~   85 (255)
                      .++..||++
T Consensus       106 ~~h~~~g~~  114 (122)
T 2roh_A          106 AAQAYWSVD  114 (122)
T ss_dssp             HHHHHHHSS
T ss_pred             HHHHHHhhH
Confidence            999999974

>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.67  E-value=5.4e-17  Score=116.57  Aligned_cols=59  Identities=17%  Similarity=0.331  Sum_probs=56.0

Q ss_pred             cCCCCccCCCCChhhHHHHHHHHHHcCCchhhhhccCCCCCHHHHHHHHHHHHHhHHHhh
Q 046570           57 QLSPTVQHRPFTPAEDSIIIQAHAVHGNKWATIARSLPGRTDNAIKNHWNSTLRRKRMAE  116 (255)
Q Consensus        57 ~L~p~l~k~~WT~eED~~Ll~~v~~~G~~W~~IA~~~pgRT~~qcknRw~~llr~k~~~~  116 (255)
                      +|+|.+++++||++||++|++++..||.+|..||. |+|||+.||++||..++++.....
T Consensus         2 ~L~P~~~k~~WT~eED~~L~~~~~~~g~~W~~Ia~-~~gRt~~qcr~Rw~~~l~~~~~~~   60 (66)
T 2din_A            2 SSGSSGKKTEWSREEEEKLLHLAKLMPTQWRTIAP-IIGRTAAQCLEHYEFLLDKAAQRD   60 (66)
T ss_dssp             CCSSSSSCCCCCHHHHHHHHHHHHHCTTCHHHHHH-HHSSCHHHHHHHHHHHHHHHHHSS
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHcCCCHHHHhc-ccCcCHHHHHHHHHHHhChHhcCC
Confidence            69999999999999999999999999999999999 889999999999999999887654

>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.67  E-value=6.4e-17  Score=118.23  Aligned_cols=58  Identities=19%  Similarity=0.240  Sum_probs=54.7

Q ss_pred             CCCCccCCCCChhhHHHHHHHHHHcCCchhhhhccCCCCCHHHHHHHHHHHHHhHHHh
Q 046570           58 LSPTVQHRPFTPAEDSIIIQAHAVHGNKWATIARSLPGRTDNAIKNHWNSTLRRKRMA  115 (255)
Q Consensus        58 L~p~l~k~~WT~eED~~Ll~~v~~~G~~W~~IA~~~pgRT~~qcknRw~~llr~k~~~  115 (255)
                      ++|.+++++||++||++|++++.+||.+|..||.+|||||++||++||+.++++....
T Consensus         3 ~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~r~~~~l~~~~~~   60 (72)
T 2cu7_A            3 SGSSGYSVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKC   60 (72)
T ss_dssp             CCCSSCCCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHSCS
T ss_pred             CCCCcCCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHHHHhc
Confidence            5789999999999999999999999999999999999999999999999999887554

>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A

Probab=99.66  E-value=1.6e-17  Score=119.09  Aligned_cols=57  Identities=25%  Similarity=0.396  Sum_probs=49.6

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCChhhhccCCC--CCCcccccccccccCCCCcc
Q 046570            7 NNDRIKGSWSPQEDATLIKLVEQHGPRNWSMISSGIP--GRSGKSCRLRWCNQLSPTVQ   63 (255)
Q Consensus         7 ~~~~~kg~WT~eED~~L~~lv~~~G~~~W~~IA~~lp--gRt~~qCr~Rw~~~L~p~l~   63 (255)
                      .+..+|++||+|||++|+++|.+||+.+|..||..+|  +||+.||++||+++++|.++
T Consensus         6 ~~~~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~glN   64 (64)
T 3sjm_A            6 TNITKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGMN   64 (64)
T ss_dssp             ----CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTCC
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccCCC
Confidence            3456899999999999999999999889999999865  99999999999999988764

>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.63  E-value=1.6e-17  Score=119.42  Aligned_cols=60  Identities=25%  Similarity=0.454  Sum_probs=56.0

Q ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHHhCCCChhhhccCCCCCCcccccccccccCCCCccCC
Q 046570            4 NSNNNDRIKGSWSPQEDATLIKLVEQHGPRNWSMISSGIPGRSGKSCRLRWCNQLSPTVQHR   65 (255)
Q Consensus         4 n~l~~~~~kg~WT~eED~~L~~lv~~~G~~~W~~IA~~lpgRt~~qCr~Rw~~~L~p~l~k~   65 (255)
                      .+|+|.+++++||++||++|+.+|..||. +|..||. |+|||+.||+.||.++|+|.++++
T Consensus         1 g~L~P~~~k~~WT~eED~~L~~~~~~~g~-~W~~Ia~-~~gRt~~qcr~Rw~~~l~~~~~~~   60 (66)
T 2din_A            1 GSSGSSGKKTEWSREEEEKLLHLAKLMPT-QWRTIAP-IIGRTAAQCLEHYEFLLDKAAQRD   60 (66)
T ss_dssp             CCCSSSSSCCCCCHHHHHHHHHHHHHCTT-CHHHHHH-HHSSCHHHHHHHHHHHHHHHHHSS
T ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHHcCC-CHHHHhc-ccCcCHHHHHHHHHHHhChHhcCC
Confidence            47999999999999999999999999995 8999999 899999999999999999877664

>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1

Probab=99.63  E-value=7e-17  Score=114.09  Aligned_cols=56  Identities=20%  Similarity=0.413  Sum_probs=52.2

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCChhhhccCCCCCCcccccccccccCCCCc
Q 046570            7 NNDRIKGSWSPQEDATLIKLVEQHGPRNWSMISSGIPGRSGKSCRLRWCNQLSPTV   62 (255)
Q Consensus         7 ~~~~~kg~WT~eED~~L~~lv~~~G~~~W~~IA~~lpgRt~~qCr~Rw~~~L~p~l   62 (255)
                      .+.+.+++||++||.+|+++|.+||.++|..||.+||+||+.||+.||.++|.+..
T Consensus         3 s~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~~~~l~~~~   58 (60)
T 1x41_A            3 SGSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFSGPS   58 (60)
T ss_dssp             CCCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHTTCSS
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHHHHHccCCC
Confidence            36789999999999999999999998899999999999999999999999998653

>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}

Probab=99.61  E-value=2.8e-16  Score=110.69  Aligned_cols=54  Identities=24%  Similarity=0.396  Sum_probs=50.5

Q ss_pred             CCCccCCCCChhhHHHHHHHHHHcC-CchhhhhccCCCCCHHHHHHHHHHHHHhH
Q 046570           59 SPTVQHRPFTPAEDSIIIQAHAVHG-NKWATIARSLPGRTDNAIKNHWNSTLRRK  112 (255)
Q Consensus        59 ~p~l~k~~WT~eED~~Ll~~v~~~G-~~W~~IA~~~pgRT~~qcknRw~~llr~k  112 (255)
                      +|.+++++||++||++|+++|.+|| ++|..||.+|||||+.||++||..+|+..
T Consensus         3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~   57 (60)
T 2d9a_A            3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVLSGP   57 (60)
T ss_dssp             SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHHHHTSCSS
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccCCCHHHHHHHHHHHcCCc
Confidence            5788999999999999999999999 59999999999999999999999988754

>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A

Probab=99.60  E-value=8e-16  Score=105.30  Aligned_cols=50  Identities=28%  Similarity=0.527  Sum_probs=45.9

Q ss_pred             ccCCCCChhhHHHHHHHHHHcCC-chhhhhccCCCCCHHHHHHHHHHHHHh
Q 046570           62 VQHRPFTPAEDSIIIQAHAVHGN-KWATIARSLPGRTDNAIKNHWNSTLRR  111 (255)
Q Consensus        62 l~k~~WT~eED~~Ll~~v~~~G~-~W~~IA~~~pgRT~~qcknRw~~llr~  111 (255)
                      +++++||++||.+|+++|.+||. +|..||..|||||+.||++||..+|+.
T Consensus         1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P   51 (52)
T 1guu_A            1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNP   51 (52)
T ss_dssp             --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHSC
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHHcCc
Confidence            46899999999999999999998 899999999999999999999998863

>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A

Probab=99.60  E-value=1.8e-16  Score=109.23  Aligned_cols=49  Identities=27%  Similarity=0.373  Sum_probs=46.6

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCChhhhccCCC--CCCcccccccccccCC
Q 046570           11 IKGSWSPQEDATLIKLVEQHGPRNWSMISSGIP--GRSGKSCRLRWCNQLS   59 (255)
Q Consensus        11 ~kg~WT~eED~~L~~lv~~~G~~~W~~IA~~lp--gRt~~qCr~Rw~~~L~   59 (255)
                      ++|+||++||++|+.+|.+||+++|..||..||  |||+.||++||.+++.
T Consensus         1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k   51 (53)
T 1w0t_A            1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK   51 (53)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHT
T ss_pred             CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHc
Confidence            589999999999999999999889999999999  9999999999998875

>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}

Probab=99.60  E-value=2.3e-16  Score=110.80  Aligned_cols=54  Identities=24%  Similarity=0.494  Sum_probs=49.3

Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHhCCCChhhhccCCC-CCCcccccccccccC
Q 046570            5 SNNNDRIKGSWSPQEDATLIKLVEQHGPRNWSMISSGIP-GRSGKSCRLRWCNQL   58 (255)
Q Consensus         5 ~l~~~~~kg~WT~eED~~L~~lv~~~G~~~W~~IA~~lp-gRt~~qCr~Rw~~~L   58 (255)
                      +++..+.+++||++||.+|+++|.+||..+|..||.+|+ +||+.||+.||.+++
T Consensus         2 ~~~~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~   56 (58)
T 2elk_A            2 SSGSSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY   56 (58)
T ss_dssp             CSCCCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence            345567799999999999999999999889999999999 999999999998865

>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.58  E-value=1.7e-16  Score=116.02  Aligned_cols=63  Identities=16%  Similarity=0.213  Sum_probs=56.6

Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHhCCCChhhhccCCCCCCcccccccccccCCCCccCCCCCh
Q 046570            5 SNNNDRIKGSWSPQEDATLIKLVEQHGPRNWSMISSGIPGRSGKSCRLRWCNQLSPTVQHRPFTP   69 (255)
Q Consensus         5 ~l~~~~~kg~WT~eED~~L~~lv~~~G~~~W~~IA~~lpgRt~~qCr~Rw~~~L~p~l~k~~WT~   69 (255)
                      +++|.+++|+||++||++|+.+|..||. +|..||.+|||||+.||+.||.++|.+.++. .+++
T Consensus         2 s~~p~~~~~~WT~eEd~~l~~~~~~~G~-~W~~Ia~~~~~Rt~~q~k~r~~~~l~~~~~~-g~~~   64 (72)
T 2cu7_A            2 SSGSSGYSVKWTIEEKELFEQGLAKFGR-RWTKISKLIGSRTVLQVKSYARQYFKNKVKC-GLDK   64 (72)
T ss_dssp             CCCCSSCCCCCCHHHHHHHHHHHHHTCS-CHHHHHHHHSSSCHHHHHHHHHHHHHHHSCS-CTTC
T ss_pred             CCCCCcCCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHcCCCCHHHHHHHHHHHHHHHHhc-CCCC
Confidence            6789999999999999999999999995 8999999999999999999999998876655 4443

>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A

Probab=99.58  E-value=1.5e-15  Score=103.97  Aligned_cols=50  Identities=28%  Similarity=0.598  Sum_probs=46.5

Q ss_pred             ccCCCCChhhHHHHHHHHHHcCC-chhhhhccCCCCCHHHHHHHHHHHHHh
Q 046570           62 VQHRPFTPAEDSIIIQAHAVHGN-KWATIARSLPGRTDNAIKNHWNSTLRR  111 (255)
Q Consensus        62 l~k~~WT~eED~~Ll~~v~~~G~-~W~~IA~~~pgRT~~qcknRw~~llr~  111 (255)
                      +++++||++||.+|+++|.+||. +|..||..|||||+.||++||..+|+.
T Consensus         1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P   51 (52)
T 1gvd_A            1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNP   51 (52)
T ss_dssp             CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTSC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHHHHHcCc
Confidence            46899999999999999999997 699999999999999999999988753

>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A

Probab=99.57  E-value=2e-15  Score=103.94  Aligned_cols=49  Identities=18%  Similarity=0.356  Sum_probs=46.3

Q ss_pred             cCCCCChhhHHHHHHHHHHcC-CchhhhhccCC--CCCHHHHHHHHHHHHHh
Q 046570           63 QHRPFTPAEDSIIIQAHAVHG-NKWATIARSLP--GRTDNAIKNHWNSTLRR  111 (255)
Q Consensus        63 ~k~~WT~eED~~Ll~~v~~~G-~~W~~IA~~~p--gRT~~qcknRw~~llr~  111 (255)
                      ++++||++||++|+++|.+|| ++|..||..||  |||+.||++||.++++.
T Consensus         1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k~   52 (53)
T 1w0t_A            1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKL   52 (53)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHTC
T ss_pred             CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHcc
Confidence            468999999999999999999 69999999999  99999999999999875

>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1

Probab=99.55  E-value=3.4e-15  Score=105.40  Aligned_cols=52  Identities=17%  Similarity=0.353  Sum_probs=48.7

Q ss_pred             CCCccCCCCChhhHHHHHHHHHHcC-CchhhhhccCCCCCHHHHHHHHHHHHH
Q 046570           59 SPTVQHRPFTPAEDSIIIQAHAVHG-NKWATIARSLPGRTDNAIKNHWNSTLR  110 (255)
Q Consensus        59 ~p~l~k~~WT~eED~~Ll~~v~~~G-~~W~~IA~~~pgRT~~qcknRw~~llr  110 (255)
                      .+.+.+++||++||++|+++|.+|| ++|..||.+|||||+.||++||..++.
T Consensus         3 s~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~~~~l~   55 (60)
T 1x41_A            3 SGSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFS   55 (60)
T ss_dssp             CCCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHTT
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHHHHHcc
Confidence            3678899999999999999999999 799999999999999999999998875

>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A

Probab=99.55  E-value=7e-15  Score=106.44  Aligned_cols=58  Identities=17%  Similarity=0.305  Sum_probs=52.7

Q ss_pred             cCCCCccCCCCChhhHHHHHHHHHHcC-CchhhhhccCC--CCCHHHHHHHHHHHHHhHHH
Q 046570           57 QLSPTVQHRPFTPAEDSIIIQAHAVHG-NKWATIARSLP--GRTDNAIKNHWNSTLRRKRM  114 (255)
Q Consensus        57 ~L~p~l~k~~WT~eED~~Ll~~v~~~G-~~W~~IA~~~p--gRT~~qcknRw~~llr~k~~  114 (255)
                      ...+..++++||++||++|+++|.+|| ++|..||..|+  |||+.||++||..+++..+.
T Consensus         3 ~~~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~   63 (69)
T 1ity_A            3 EKHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLI   63 (69)
T ss_dssp             CTTCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCC
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCC
Confidence            345677899999999999999999999 69999999999  99999999999999987643

>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.55  E-value=6e-16  Score=113.68  Aligned_cols=61  Identities=16%  Similarity=0.247  Sum_probs=55.5

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCC-----CChhhhccCCCCCCcccccccccccCCCCccCCCC
Q 046570            7 NNDRIKGSWSPQEDATLIKLVEQHGP-----RNWSMISSGIPGRSGKSCRLRWCNQLSPTVQHRPF   67 (255)
Q Consensus         7 ~~~~~kg~WT~eED~~L~~lv~~~G~-----~~W~~IA~~lpgRt~~qCr~Rw~~~L~p~l~k~~W   67 (255)
                      .|.+.+++||++||++|+++|..||.     .+|..||.+|++||+.||+.||+++|.+.++.+..
T Consensus         3 ~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~~~k~g~~   68 (75)
T 2yum_A            3 SGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIKLTKAGIP   68 (75)
T ss_dssp             CCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGGGSTTCSC
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCC
Confidence            57889999999999999999999996     68999999999999999999999999887766543

>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}

Probab=99.53  E-value=2.2e-15  Score=110.65  Aligned_cols=59  Identities=27%  Similarity=0.445  Sum_probs=47.8

Q ss_pred             CCCCCCCCCCCCCCCHHHHHHHHHHHHHhCCCChhhhccCCCCCCcccccccccccCCCCcc
Q 046570            2 NSNSNNNDRIKGSWSPQEDATLIKLVEQHGPRNWSMISSGIPGRSGKSCRLRWCNQLSPTVQ   63 (255)
Q Consensus         2 ~sn~l~~~~~kg~WT~eED~~L~~lv~~~G~~~W~~IA~~lpgRt~~qCr~Rw~~~L~p~l~   63 (255)
                      .-|+|+|.+++|+||+|||++|+++|.+||. +|..||+.| |||+.||+.||.. |....+
T Consensus        13 ~~~~ldP~i~k~~wT~EED~~L~~l~~~~G~-kW~~IA~~l-gRt~~q~knRw~~-L~~~~~   71 (73)
T 2llk_A           13 NLYFQGDRNHVGKYTPEEIEKLKELRIKHGN-DWATIGAAL-GRSASSVKDRCRL-MKDTCN   71 (73)
T ss_dssp             ------CCCCCCSSCHHHHHHHHHHHHHHSS-CHHHHHHHH-TSCHHHHHHHHHH-CSCCCS
T ss_pred             eeeecCCCCCCCCCCHHHHHHHHHHHHHHCC-CHHHHHHHh-CCCHHHHHHHHHH-HHHHcc
Confidence            3578999999999999999999999999995 599999999 9999999999974 544433

>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.53  E-value=7.2e-15  Score=106.59  Aligned_cols=56  Identities=23%  Similarity=0.339  Sum_probs=51.7

Q ss_pred             CCCccCCCCChhhHHHHHHHHHHcC-CchhhhhccCCCCCHHHHHHHHHHHHHhHHH
Q 046570           59 SPTVQHRPFTPAEDSIIIQAHAVHG-NKWATIARSLPGRTDNAIKNHWNSTLRRKRM  114 (255)
Q Consensus        59 ~p~l~k~~WT~eED~~Ll~~v~~~G-~~W~~IA~~~pgRT~~qcknRw~~llr~k~~  114 (255)
                      .|.+++++||++||++|+++|.+|| ++|..||.+|||||+.||++||..+|+....
T Consensus         4 ~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr~Rw~~~L~p~i~   60 (70)
T 2dim_A            4 GSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIK   60 (70)
T ss_dssp             CSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTTCCHHHHHHHHHHTSCSSSC
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcCCCHHHHHHHHHHHcCCccc
Confidence            4678899999999999999999999 7999999999999999999999999876543

>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}

Probab=99.52  E-value=3.2e-15  Score=120.82  Aligned_cols=85  Identities=25%  Similarity=0.445  Sum_probs=64.0

Q ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHHhCCCChhhhccCCCCCCcccccccccccCCCCccCCCCChhhHHHHHHHHHHcC
Q 046570            4 NSNNNDRIKGSWSPQEDATLIKLVEQHGPRNWSMISSGIPGRSGKSCRLRWCNQLSPTVQHRPFTPAEDSIIIQAHAVHG   83 (255)
Q Consensus         4 n~l~~~~~kg~WT~eED~~L~~lv~~~G~~~W~~IA~~lpgRt~~qCr~Rw~~~L~p~l~k~~WT~eED~~Ll~~v~~~G   83 (255)
                      ++|+|.+++|+||++||.+|+.+|..|| .+|..||.+|||||+.||+.||.++|++.+..++|+.+--.-    ....+
T Consensus        46 ~~l~p~~~~~~Wt~eEd~~L~~~~~~~G-~~W~~Ia~~l~gRt~~~~k~rw~~~l~~~~~~~~~~~~~~~p----~~~kk  120 (131)
T 3zqc_A           46 NHLDPAVVKHAWTPEEDETIFRNYLKLG-SKWSVIAKLIPGRTDNAIKNRWNSSISKRISTNSNHKEILLP----DRSKK  120 (131)
T ss_dssp             HHTSTTCCCSCCCHHHHHHHHHHHHHSC-SCHHHHTTTSTTCCHHHHHHHHHHTTGGGCCCCTTSCCCCCC----CCC--
T ss_pred             hccCccccCCCCCHHHHHHHHHHHHHHC-cCHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCCCcccccCc----hhhhh
Confidence            5789999999999999999999999999 679999999999999999999999999999999888763110    11224


Q ss_pred             CchhhhhccC
Q 046570           84 NKWATIARSL   93 (255)
Q Consensus        84 ~~W~~IA~~~   93 (255)
                      .+|..|++.|
T Consensus       121 ~~~~~i~k~~  130 (131)
T 3zqc_A          121 RKAADVPKKL  130 (131)
T ss_dssp             ----------
T ss_pred             hhhhhcchhc
Confidence            5688887765

>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.51  E-value=1.1e-14  Score=106.93  Aligned_cols=56  Identities=18%  Similarity=0.205  Sum_probs=51.8

Q ss_pred             CCCccCCCCChhhHHHHHHHHHHcC------CchhhhhccCCCCCHHHHHHHHHHHHHhHHH
Q 046570           59 SPTVQHRPFTPAEDSIIIQAHAVHG------NKWATIARSLPGRTDNAIKNHWNSTLRRKRM  114 (255)
Q Consensus        59 ~p~l~k~~WT~eED~~Ll~~v~~~G------~~W~~IA~~~pgRT~~qcknRw~~llr~k~~  114 (255)
                      +|.+.+++||++||++|++++.+||      .+|..||.+|||||..||++||++++.+...
T Consensus         3 ~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~~~k   64 (75)
T 2yum_A            3 SGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIKLTK   64 (75)
T ss_dssp             CCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGGGST
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHHHHh
Confidence            5788899999999999999999999      7899999999999999999999999887643

>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}

Probab=99.50  E-value=2.1e-14  Score=100.70  Aligned_cols=50  Identities=24%  Similarity=0.426  Sum_probs=46.1

Q ss_pred             CCccCCCCChhhHHHHHHHHHHcC-CchhhhhccCC-CCCHHHHHHHHHHHH
Q 046570           60 PTVQHRPFTPAEDSIIIQAHAVHG-NKWATIARSLP-GRTDNAIKNHWNSTL  109 (255)
Q Consensus        60 p~l~k~~WT~eED~~Ll~~v~~~G-~~W~~IA~~~p-gRT~~qcknRw~~ll  109 (255)
                      ..+.+++||++||.+|+++|.+|| ++|..||.+|| |||+.||++||..++
T Consensus         5 ~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~   56 (58)
T 2elk_A            5 SSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY   56 (58)
T ss_dssp             CCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence            456688999999999999999999 89999999999 999999999998764

>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A

Probab=99.49  E-value=2.8e-14  Score=102.18  Aligned_cols=51  Identities=25%  Similarity=0.494  Sum_probs=46.0

Q ss_pred             ccCCCCChhhHHHHHHHHHHcC-CchhhhhccCC--CCCHHHHHHHHHHHHHhH
Q 046570           62 VQHRPFTPAEDSIIIQAHAVHG-NKWATIARSLP--GRTDNAIKNHWNSTLRRK  112 (255)
Q Consensus        62 l~k~~WT~eED~~Ll~~v~~~G-~~W~~IA~~~p--gRT~~qcknRw~~llr~k  112 (255)
                      .++++||+|||++|+++|.+|| ++|..||..+|  |||+.||++||+++++..
T Consensus         9 ~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~g   62 (64)
T 3sjm_A            9 TKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLG   62 (64)
T ss_dssp             -CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTT
T ss_pred             CCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccC
Confidence            4678999999999999999999 58999999866  999999999999998754

>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}

Probab=99.22  E-value=2.6e-15  Score=114.13  Aligned_cols=59  Identities=20%  Similarity=0.306  Sum_probs=54.7

Q ss_pred             cCCCCccCCCCChhhHHHHHHHHHHcCCchhhhhccCCCCCHHHHHHHHHHHHHhHHHh
Q 046570           57 QLSPTVQHRPFTPAEDSIIIQAHAVHGNKWATIARSLPGRTDNAIKNHWNSTLRRKRMA  115 (255)
Q Consensus        57 ~L~p~l~k~~WT~eED~~Ll~~v~~~G~~W~~IA~~~pgRT~~qcknRw~~llr~k~~~  115 (255)
                      .++|.+++++||++||.+|++++..||++|..||.+|||||++||++||+.++++....
T Consensus         9 ~~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~IA~~l~gRt~~q~k~r~~~~lrk~~l~   67 (89)
T 2ltp_A            9 SGRENLYFQGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNYKKRQNLD   67 (89)
Confidence            56788999999999999999999999999999999999999999999999999876443

>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3

Probab=99.45  E-value=6.3e-14  Score=109.64  Aligned_cols=78  Identities=22%  Similarity=0.333  Sum_probs=67.1

Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHhCCCChhhhccCC----CCCCcccccccccccC-----CCCccCCCCChhhHHH-H
Q 046570            6 NNNDRIKGSWSPQEDATLIKLVEQHGPRNWSMISSGI----PGRSGKSCRLRWCNQL-----SPTVQHRPFTPAEDSI-I   75 (255)
Q Consensus         6 l~~~~~kg~WT~eED~~L~~lv~~~G~~~W~~IA~~l----pgRt~~qCr~Rw~~~L-----~p~l~k~~WT~eED~~-L   75 (255)
                      ....+++++||++||+.|+.+|.+||.++|..|+..+    ++||+.+|++||++++     +|.++++.-+|.+-.. +
T Consensus         7 ~~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~~~~p~~~rg~~~P~~~l~rv   86 (105)
T 2aje_A            7 DPQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAKISPQQRRGEPVPQELLNRV   86 (105)
T ss_dssp             --CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTTTCCTTTTTCCSCCCHHHHHH
T ss_pred             ccCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCcccccCCCCCHHHHHHH
Confidence            4578899999999999999999999988999999865    8999999999999988     6889898888877655 7


Q ss_pred             HHHHHHcC
Q 046570           76 IQAHAVHG   83 (255)
Q Consensus        76 l~~v~~~G   83 (255)
                      +.++..+|
T Consensus        87 ~~~~~~~~   94 (105)
T 2aje_A           87 LNAHGYWT   94 (105)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            77776655

>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A

Probab=99.43  E-value=4.3e-14  Score=109.68  Aligned_cols=57  Identities=25%  Similarity=0.541  Sum_probs=52.3

Q ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHHhCCCChhhhccCCCCCCcccccccccccCCCC
Q 046570            4 NSNNNDRIKGSWSPQEDATLIKLVEQHGPRNWSMISSGIPGRSGKSCRLRWCNQLSPT   61 (255)
Q Consensus         4 n~l~~~~~kg~WT~eED~~L~~lv~~~G~~~W~~IA~~lpgRt~~qCr~Rw~~~L~p~   61 (255)
                      ++|+|.+++|+||++||.+|+.+|..|| .+|..||.+|||||+.||+.||..+|...
T Consensus        48 ~~l~p~~~~~~Wt~eEd~~L~~~~~~~G-~~W~~Ia~~l~gRt~~~~k~rw~~~~~~~  104 (105)
T 1gv2_A           48 NHLNPEVKKTSWTEEEDRIIYQAHKRLG-NRWAEIAKLLPGRTDNAIKNHWNSTMRRK  104 (105)
T ss_dssp             HTTCCCCCCCCCCHHHHHHHHHHHHHHS-SCHHHHHTTCTTCCHHHHHHHHHHHTC--
T ss_pred             hccCCcccccCCCHHHHHHHHHHHHHhC-CCHHHHHHHcCCCCHHHHHHHHHHHHhcc
Confidence            5789999999999999999999999999 58999999999999999999999887653

>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A

Probab=99.43  E-value=6e-14  Score=105.44  Aligned_cols=68  Identities=21%  Similarity=0.341  Sum_probs=59.5

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCChhhhccC----CCCCCcccccccccccC-----CCCccCC-CCChhhHHHHHHHHH
Q 046570           13 GSWSPQEDATLIKLVEQHGPRNWSMISSG----IPGRSGKSCRLRWCNQL-----SPTVQHR-PFTPAEDSIIIQAHA   80 (255)
Q Consensus        13 g~WT~eED~~L~~lv~~~G~~~W~~IA~~----lpgRt~~qCr~Rw~~~L-----~p~l~k~-~WT~eED~~Ll~~v~   80 (255)
                      ++||++||+.|+.+|.+||.++|..|+..    |++||+.+|++||++++     +|.++++ +..++...+++.++.
T Consensus         1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~~~~p~~~~~~~~p~~~~~rv~~~~a   78 (83)
T 2ckx_A            1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRVLAAHA   78 (83)
T ss_dssp             CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHHSCGGGCCSSCCCHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhccCCcccccCCCCCHHHHHHHHHHHH
Confidence            58999999999999999998899999984    89999999999999987     6776665 677777788888764

>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}

Probab=99.12  E-value=1.7e-14  Score=109.62  Aligned_cols=57  Identities=23%  Similarity=0.369  Sum_probs=52.7

Q ss_pred             CCCCCCCCCCCCCCHHHHHHHHHHHHHhCCCChhhhccCCCCCCcccccccccccCCC
Q 046570            3 SNSNNNDRIKGSWSPQEDATLIKLVEQHGPRNWSMISSGIPGRSGKSCRLRWCNQLSP   60 (255)
Q Consensus         3 sn~l~~~~~kg~WT~eED~~L~~lv~~~G~~~W~~IA~~lpgRt~~qCr~Rw~~~L~p   60 (255)
                      +.++.|.+.+|+||++||.+|+.+|..||. +|..||.+|||||+.||+.||.++|..
T Consensus         7 ~~~~~p~~~~~~WT~eEd~~l~~~~~~~G~-~W~~IA~~l~gRt~~q~k~r~~~~lrk   63 (89)
T 2ltp_A            7 HSSGRENLYFQGWTEEEMGTAKKGLLEHGR-NWSAIARMVGSKTVSQCKNFYFNYKKR   63 (89)
Confidence            456789999999999999999999999995 799999999999999999999998763

>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.40  E-value=2.7e-13  Score=99.54  Aligned_cols=51  Identities=16%  Similarity=0.340  Sum_probs=47.1

Q ss_pred             CCccCCCCChhhHHHHHHHHHHcC----CchhhhhccCCCCCHHHHHHHHHHHHH
Q 046570           60 PTVQHRPFTPAEDSIIIQAHAVHG----NKWATIARSLPGRTDNAIKNHWNSTLR  110 (255)
Q Consensus        60 p~l~k~~WT~eED~~Ll~~v~~~G----~~W~~IA~~~pgRT~~qcknRw~~llr  110 (255)
                      +...+++||++||.+|++++..||    .+|.+||.+|||||..||++||..++.
T Consensus        14 ~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~   68 (73)
T 2cqr_A           14 ARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLVS   68 (73)
T ss_dssp             TTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHHHS
T ss_pred             cccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence            456788999999999999999999    689999999999999999999998865

>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}

Probab=99.39  E-value=1.1e-13  Score=103.05  Aligned_cols=50  Identities=20%  Similarity=0.447  Sum_probs=46.8

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCChhhhccCCCCCCccccccccccc
Q 046570            7 NNDRIKGSWSPQEDATLIKLVEQHGPRNWSMISSGIPGRSGKSCRLRWCNQ   57 (255)
Q Consensus         7 ~~~~~kg~WT~eED~~L~~lv~~~G~~~W~~IA~~lpgRt~~qCr~Rw~~~   57 (255)
                      .....+++||++||.+|+++|.+|| .+|..||.+|++||+.||+.||.++
T Consensus        13 ~~~~~~~~WT~eEd~~Ll~~v~~~G-~~W~~IA~~v~~RT~~qcr~r~~~~   62 (79)
T 2yus_A           13 KGASAGREWTEQETLLLLEALEMYK-DDWNKVSEHVGSRTQDECILHFLRL   62 (79)
T ss_dssp             CSSCCSCCCCHHHHHHHHHHHHHSS-SCHHHHHHHHSSCCHHHHHHHHTTS
T ss_pred             cccccCCCcCHHHHHHHHHHHHHhC-CCHHHHHHHcCCCCHHHHHHHHHHh
Confidence            3456789999999999999999999 8999999999999999999999987

>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.37  E-value=9.7e-14  Score=101.91  Aligned_cols=53  Identities=19%  Similarity=0.387  Sum_probs=47.9

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhC---CCChhhhccCCCCCCcccccccccccCC
Q 046570            7 NNDRIKGSWSPQEDATLIKLVEQHG---PRNWSMISSGIPGRSGKSCRLRWCNQLS   59 (255)
Q Consensus         7 ~~~~~kg~WT~eED~~L~~lv~~~G---~~~W~~IA~~lpgRt~~qCr~Rw~~~L~   59 (255)
                      .+...+++||++||++|+.++..||   +.+|..||.+|||||..||+.||.+++.
T Consensus        13 ~~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~   68 (73)
T 2cqr_A           13 RARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLVS   68 (73)
T ss_dssp             TTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHHHS
T ss_pred             ccccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence            3567889999999999999999999   4579999999999999999999987664

>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A

Probab=99.34  E-value=1e-13  Score=108.24  Aligned_cols=56  Identities=30%  Similarity=0.431  Sum_probs=51.8

Q ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHHhCCCChhhhccCCCCCCcccccccccccCCC
Q 046570            4 NSNNNDRIKGSWSPQEDATLIKLVEQHGPRNWSMISSGIPGRSGKSCRLRWCNQLSP   60 (255)
Q Consensus         4 n~l~~~~~kg~WT~eED~~L~~lv~~~G~~~W~~IA~~lpgRt~~qCr~Rw~~~L~p   60 (255)
                      ++|+|.+++|+||++||.+|+.+|..|| .+|..||.+|||||+.||+.||..++.+
T Consensus        45 ~~L~p~i~~~~WT~eEd~~L~~~~~~~G-~~W~~Ia~~l~gRt~~~~k~rw~~l~r~  100 (107)
T 2k9n_A           45 NYINPALRTDPWSPEEDMLLDQKYAEYG-PKWNKISKFLKNRSDNNIRNRWMMIARH  100 (107)
T ss_dssp             HHSSSCCTTCCCCHHHHHHHHHHHHHTC-SCHHHHHHHHSSSCHHHHHHHHHHHHHH
T ss_pred             HHHcccccccccCHHHHHHHHHHHHHhC-cCHHHHHHHCCCCCHHHHHHHHHHHHhh
Confidence            5689999999999999999999999999 4799999999999999999999876653

>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}

Probab=99.34  E-value=5e-13  Score=99.51  Aligned_cols=48  Identities=17%  Similarity=0.341  Sum_probs=44.8

Q ss_pred             CccCCCCChhhHHHHHHHHHHcCCchhhhhccCCCCCHHHHHHHHHHH
Q 046570           61 TVQHRPFTPAEDSIIIQAHAVHGNKWATIARSLPGRTDNAIKNHWNST  108 (255)
Q Consensus        61 ~l~k~~WT~eED~~Ll~~v~~~G~~W~~IA~~~pgRT~~qcknRw~~l  108 (255)
                      ...+++||++||.+|++++.+||.+|..||.+|++||+.||++||..+
T Consensus        15 ~~~~~~WT~eEd~~Ll~~v~~~G~~W~~IA~~v~~RT~~qcr~r~~~~   62 (79)
T 2yus_A           15 ASAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRL   62 (79)
T ss_dssp             SCCSCCCCHHHHHHHHHHHHHSSSCHHHHHHHHSSCCHHHHHHHHTTS
T ss_pred             cccCCCcCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHh
Confidence            456789999999999999999999999999999999999999999755

>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A

Probab=99.33  E-value=2.4e-13  Score=109.05  Aligned_cols=55  Identities=27%  Similarity=0.581  Sum_probs=51.3

Q ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHHhCCCChhhhccCCCCCCcccccccccccCC
Q 046570            4 NSNNNDRIKGSWSPQEDATLIKLVEQHGPRNWSMISSGIPGRSGKSCRLRWCNQLS   59 (255)
Q Consensus         4 n~l~~~~~kg~WT~eED~~L~~lv~~~G~~~W~~IA~~lpgRt~~qCr~Rw~~~L~   59 (255)
                      ++|+|.+++|+||++||.+|+.+|..|| .+|..||.+|||||..||+.||..+++
T Consensus        54 ~~l~p~~~~~~WT~eEd~~L~~~v~~~G-~~W~~Ia~~l~gRt~~~~k~rw~~l~~  108 (126)
T 3osg_A           54 NYLAPSISHTPWTAEEDALLVQKIQEYG-RQWAIIAKFFPGRTDIHIKNRWVTISN  108 (126)
T ss_dssp             HHTSTTSCCSCCCHHHHHHHHHHHHHHC-SCHHHHHTTSTTCCHHHHHHHHHHHHH
T ss_pred             hhcccccccccCCHHHHHHHHHHHHHHC-cCHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence            5689999999999999999999999999 689999999999999999999987654

>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1

Probab=99.30  E-value=2.7e-12  Score=90.94  Aligned_cols=51  Identities=18%  Similarity=0.346  Sum_probs=46.8

Q ss_pred             ccCCCCChhhHHHHHHHHHHcCCchhhhh---ccCCCCCHHHHHHHHHHHHHhH
Q 046570           62 VQHRPFTPAEDSIIIQAHAVHGNKWATIA---RSLPGRTDNAIKNHWNSTLRRK  112 (255)
Q Consensus        62 l~k~~WT~eED~~Ll~~v~~~G~~W~~IA---~~~pgRT~~qcknRw~~llr~k  112 (255)
                      .++.+||+||++.|+++|++||.+|..|+   .+|++||..++++||+.++++.
T Consensus         6 ~~r~~WT~EE~~~L~~gV~k~G~~W~~I~~~y~f~~~RT~VdLKdk~r~L~k~~   59 (62)
T 1x58_A            6 SGRKDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYHRLISGP   59 (62)
T ss_dssp             CCSSSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHHHHHTCS
T ss_pred             CCCCCCCHHHHHHHHHHHHHHhHhHHHHHHhCCCccCcccchHHHHHHHHHhcc
Confidence            36789999999999999999999999999   6788999999999999988753

>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A

Probab=99.27  E-value=5.2e-12  Score=94.82  Aligned_cols=49  Identities=24%  Similarity=0.504  Sum_probs=45.4

Q ss_pred             CCCChhhHHHHHHHHHHcCC-chhhhhcc----CCCCCHHHHHHHHHHHHHhHH
Q 046570           65 RPFTPAEDSIIIQAHAVHGN-KWATIARS----LPGRTDNAIKNHWNSTLRRKR  113 (255)
Q Consensus        65 ~~WT~eED~~Ll~~v~~~G~-~W~~IA~~----~pgRT~~qcknRw~~llr~k~  113 (255)
                      .+||++||+.|+.+|.+||. +|+.|+..    |+|||+.+||+||+++++...
T Consensus         1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~~   54 (83)
T 2ckx_A            1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTAS   54 (83)
T ss_dssp             CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhcc
Confidence            48999999999999999996 99999995    899999999999999998664

>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3

Probab=99.23  E-value=1.2e-11  Score=96.59  Aligned_cols=54  Identities=24%  Similarity=0.446  Sum_probs=48.3

Q ss_pred             CCCccCCCCChhhHHHHHHHHHHcCC-chhhhhccC----CCCCHHHHHHHHHHHHHhH
Q 046570           59 SPTVQHRPFTPAEDSIIIQAHAVHGN-KWATIARSL----PGRTDNAIKNHWNSTLRRK  112 (255)
Q Consensus        59 ~p~l~k~~WT~eED~~Ll~~v~~~G~-~W~~IA~~~----pgRT~~qcknRw~~llr~k  112 (255)
                      .+..++++||++||+.|+.+|.+||. +|+.|+..+    ++||+.+|++||+++++..
T Consensus         8 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~   66 (105)
T 2aje_A            8 PQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTA   66 (105)
T ss_dssp             -CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTT
T ss_pred             cCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhc
Confidence            34567899999999999999999996 999999965    8999999999999998754

>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}

Probab=99.22  E-value=9e-12  Score=99.62  Aligned_cols=56  Identities=25%  Similarity=0.468  Sum_probs=50.8

Q ss_pred             cCCCCccCCCCChhhHHHHHHHHHHcCC-chhhhhcc----CCCCCHHHHHHHHHHHHHhH
Q 046570           57 QLSPTVQHRPFTPAEDSIIIQAHAVHGN-KWATIARS----LPGRTDNAIKNHWNSTLRRK  112 (255)
Q Consensus        57 ~L~p~l~k~~WT~eED~~Ll~~v~~~G~-~W~~IA~~----~pgRT~~qcknRw~~llr~k  112 (255)
                      -+.+..++++||++||+.|+++|.+||. +|+.|+..    |+|||+.+|++||+++++..
T Consensus        10 ~~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~   70 (121)
T 2juh_A           10 ELSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTA   70 (121)
T ss_dssp             CCCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHH
T ss_pred             cccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhhh
Confidence            3566778899999999999999999996 99999998    58999999999999999864

>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3

Probab=99.20  E-value=2.6e-11  Score=92.84  Aligned_cols=53  Identities=28%  Similarity=0.569  Sum_probs=47.2

Q ss_pred             cCCCCChhhHHHHHHHHHHcC----CchhhhhccCCCCCHHHHHHHHHHHHHhHHHh
Q 046570           63 QHRPFTPAEDSIIIQAHAVHG----NKWATIARSLPGRTDNAIKNHWNSTLRRKRMA  115 (255)
Q Consensus        63 ~k~~WT~eED~~Ll~~v~~~G----~~W~~IA~~~pgRT~~qcknRw~~llr~k~~~  115 (255)
                      .+++||++||++|++++.+||    ++|.+||..|||||..+|++||..++......
T Consensus         7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~~dv~~i   63 (93)
T 2cjj_A            7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIKYI   63 (93)
T ss_dssp             -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh
Confidence            467999999999999999996    67999999999999999999999998775443

>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A

Probab=99.19  E-value=9.3e-12  Score=109.56  Aligned_cols=55  Identities=22%  Similarity=0.442  Sum_probs=48.4

Q ss_pred             CCccCCCCChhhHHHHHHHHHHcCCc------hhhhhccCCCCCHHHHHHHHHHHHHhHHH
Q 046570           60 PTVQHRPFTPAEDSIIIQAHAVHGNK------WATIARSLPGRTDNAIKNHWNSTLRRKRM  114 (255)
Q Consensus        60 p~l~k~~WT~eED~~Ll~~v~~~G~~------W~~IA~~~pgRT~~qcknRw~~llr~k~~  114 (255)
                      +.+++++||++||++|+++|.+||++      |..||++|||||++|||+||+.+|++.+.
T Consensus         4 ~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~L~~~ln   64 (246)
T 1ign_A            4 PSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLE   64 (246)
T ss_dssp             ----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCC
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHHHhhhcc
Confidence            35678999999999999999999985      99999999999999999999999998754

>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}

Probab=99.13  E-value=5.1e-11  Score=95.36  Aligned_cols=54  Identities=24%  Similarity=0.474  Sum_probs=48.3

Q ss_pred             CCCccCCCCChhhHHHHHHHHHHcCC-chhhhhcc----CCCCCHHHHHHHHHHHHHhH
Q 046570           59 SPTVQHRPFTPAEDSIIIQAHAVHGN-KWATIARS----LPGRTDNAIKNHWNSTLRRK  112 (255)
Q Consensus        59 ~p~l~k~~WT~eED~~Ll~~v~~~G~-~W~~IA~~----~pgRT~~qcknRw~~llr~k  112 (255)
                      ....++++||++||+.|+++|.+||. +|+.|+..    |++||+.+|++||+++++..
T Consensus        26 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~   84 (122)
T 2roh_A           26 GQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTA   84 (122)
T ss_dssp             CCCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhc
Confidence            34556889999999999999999996 99999996    48999999999999999765

>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3

Probab=99.13  E-value=8.1e-12  Score=95.68  Aligned_cols=48  Identities=15%  Similarity=0.416  Sum_probs=43.5

Q ss_pred             CCCCCCHHHHHHHHHHHHHhC---CCChhhhccCCCCCCcccccccccccC
Q 046570           11 IKGSWSPQEDATLIKLVEQHG---PRNWSMISSGIPGRSGKSCRLRWCNQL   58 (255)
Q Consensus        11 ~kg~WT~eED~~L~~lv~~~G---~~~W~~IA~~lpgRt~~qCr~Rw~~~L   58 (255)
                      .+++||++||++|..++.+||   +..|..||.+|||||..||+.||.+++
T Consensus         7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~   57 (93)
T 2cjj_A            7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILV   57 (93)
T ss_dssp             -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHH
Confidence            468999999999999999997   567999999999999999999998754

>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.00  E-value=1.7e-10  Score=81.53  Aligned_cols=54  Identities=20%  Similarity=0.362  Sum_probs=47.3

Q ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHHhCCCChhhhccCCCCCCcccccccccccC
Q 046570            4 NSNNNDRIKGSWSPQEDATLIKLVEQHGPRNWSMISSGIPGRSGKSCRLRWCNQL   58 (255)
Q Consensus         4 n~l~~~~~kg~WT~eED~~L~~lv~~~G~~~W~~IA~~lpgRt~~qCr~Rw~~~L   58 (255)
                      .+.......++||++|+++|.+++.+|| .+|..||.+||+||..||..+|....
T Consensus         4 ~~~~~r~~~~~WT~eE~~~F~~~~~~~g-k~w~~Ia~~l~~rt~~~~v~~Yy~~K   57 (61)
T 2eqr_A            4 GSSGDRQFMNVWTDHEKEIFKDKFIQHP-KNFGLIASYLERKSVPDCVLYYYLTK   57 (61)
T ss_dssp             SCCCCCSCCCSCCHHHHHHHHHHHHHST-TCHHHHHHHCTTSCHHHHHHHHHHHT
T ss_pred             ccccccccCCCCCHHHHHHHHHHHHHhC-CCHHHHHHHcCCCCHHHHHHHHHHhc
Confidence            3445566779999999999999999999 68999999999999999999996543

>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.00  E-value=3.3e-10  Score=79.98  Aligned_cols=48  Identities=17%  Similarity=0.113  Sum_probs=44.0

Q ss_pred             cCCCCChhhHHHHHHHHHHcCCchhhhhccCCCCCHHHHHHHHHHHHH
Q 046570           63 QHRPFTPAEDSIIIQAHAVHGNKWATIARSLPGRTDNAIKNHWNSTLR  110 (255)
Q Consensus        63 ~k~~WT~eED~~Ll~~v~~~G~~W~~IA~~~pgRT~~qcknRw~~llr  110 (255)
                      ...+||++|++++++++.+||.+|..||..||+||..+|..+|....+
T Consensus        11 ~~~~WT~eE~~~F~~~~~~~gk~w~~Ia~~l~~rt~~~~v~~Yy~~Kk   58 (61)
T 2eqr_A           11 FMNVWTDHEKEIFKDKFIQHPKNFGLIASYLERKSVPDCVLYYYLTKK   58 (61)
T ss_dssp             CCCSCCHHHHHHHHHHHHHSTTCHHHHHHHCTTSCHHHHHHHHHHHTC
T ss_pred             cCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHhcC
Confidence            357999999999999999999999999999999999999999976543

>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1

Probab=98.96  E-value=3.2e-10  Score=80.28  Aligned_cols=50  Identities=18%  Similarity=0.254  Sum_probs=45.7

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCCChhhhc---cCCCCCCcccccccccccCC
Q 046570            9 DRIKGSWSPQEDATLIKLVEQHGPRNWSMIS---SGIPGRSGKSCRLRWCNQLS   59 (255)
Q Consensus         9 ~~~kg~WT~eED~~L~~lv~~~G~~~W~~IA---~~lpgRt~~qCr~Rw~~~L~   59 (255)
                      ...+.+||+|||+.|+++|.+||. +|..|+   .++++||...+++||+++..
T Consensus         5 ~~~r~~WT~EE~~~L~~gV~k~G~-~W~~I~~~y~f~~~RT~VdLKdk~r~L~k   57 (62)
T 1x58_A            5 SSGRKDFTKEEVNYLFHGVKTMGN-HWNSILWSFPFQKGRRAVDLAHKYHRLIS   57 (62)
T ss_dssp             CCCSSSCCHHHHHHHHHHHHHHCS-CHHHHHHHSCCCTTCCHHHHHHHHHHHHT
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHhH-hHHHHHHhCCCccCcccchHHHHHHHHHh
Confidence            458899999999999999999996 999999   68899999999999988654

>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}

Probab=98.87  E-value=2.2e-09  Score=81.96  Aligned_cols=65  Identities=11%  Similarity=0.106  Sum_probs=58.7

Q ss_pred             ccccccccccCCCCccCCCCChhhHHHHHHHHHHcCCchhhhhccC-----CCCCHHHHHHHHHHHHHhHHHhh
Q 046570           48 KSCRLRWCNQLSPTVQHRPFTPAEDSIIIQAHAVHGNKWATIARSL-----PGRTDNAIKNHWNSTLRRKRMAE  116 (255)
Q Consensus        48 ~qCr~Rw~~~L~p~l~k~~WT~eED~~Ll~~v~~~G~~W~~IA~~~-----pgRT~~qcknRw~~llr~k~~~~  116 (255)
                      .=+.++|.++|.+    .+||.+|+..|++++++||.+|..|+..+     ++||..++|+||..+.++.....
T Consensus        18 ~yt~eeY~~~L~~----~~WTkEETd~Lf~L~~~fdlRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~l~~~r   87 (93)
T 3hm5_A           18 VYSEQEYQLYLHD----DAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVR   87 (93)
T ss_dssp             CCCHHHHHHHTCB----TTBCHHHHHHHHHHHHHTTTCHHHHHHHSCTTTSCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred             ccCHHHHHHHcCC----CCCCHHHHHHHHHHHHHhCCCeeeehhhhccCCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence            5677899999876    89999999999999999999999999998     58999999999999998876554

>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*

Probab=98.81  E-value=1.8e-09  Score=103.78  Aligned_cols=48  Identities=21%  Similarity=0.284  Sum_probs=44.4

Q ss_pred             CCCChhhHHHHHHHHHHcCCchhhhhccCCCCCHHHHHHHHHHHHHhH
Q 046570           65 RPFTPAEDSIIIQAHAVHGNKWATIARSLPGRTDNAIKNHWNSTLRRK  112 (255)
Q Consensus        65 ~~WT~eED~~Ll~~v~~~G~~W~~IA~~~pgRT~~qcknRw~~llr~k  112 (255)
                      ..||++|..++++++.+||.+|..||..+++||..||+++|..+.++.
T Consensus       381 ~~WT~eE~~~f~~al~~yGkdw~~IA~~VgTKT~~Qvk~fy~~~kkr~  428 (482)
T 2xag_B          381 ARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRRF  428 (482)
T ss_dssp             SCCCHHHHHHHHHHHHHHTTCHHHHHHHHSSCCHHHHHHHHHHTTTTT
T ss_pred             CCCCHHHHHHHHHHHHHHCcCHHHHHHHhCCCCHHHHHHHHHHHHHHh
Confidence            489999999999999999999999999999999999999998766553

>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=98.78  E-value=6.8e-09  Score=75.76  Aligned_cols=50  Identities=16%  Similarity=0.259  Sum_probs=44.7

Q ss_pred             CccCCCCChhhHHHHHHHHHHcC----CchhhhhccCCCCCHHHHHHHHHHHHHh
Q 046570           61 TVQHRPFTPAEDSIIIQAHAVHG----NKWATIARSLPGRTDNAIKNHWNSTLRR  111 (255)
Q Consensus        61 ~l~k~~WT~eED~~Ll~~v~~~G----~~W~~IA~~~pgRT~~qcknRw~~llr~  111 (255)
                      ....+.||.+|+++|.+++.+|+    .+|.+||.+| |||..+|++||..+...
T Consensus         5 ~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-gRt~~eV~~~y~~L~~d   58 (72)
T 2cqq_A            5 SSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKDS   58 (72)
T ss_dssp             CCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHHHS
T ss_pred             CCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-CCCHHHHHHHHHHHHHh
Confidence            34567999999999999999997    5799999998 99999999999888654

>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*

Probab=98.75  E-value=7.4e-09  Score=90.45  Aligned_cols=51  Identities=20%  Similarity=0.261  Sum_probs=47.3

Q ss_pred             cCCCCChhhHHHHHHHHHHcCCchhhhhccCCCCCHHHHHHHHHHHHHhHH
Q 046570           63 QHRPFTPAEDSIIIQAHAVHGNKWATIARSLPGRTDNAIKNHWNSTLRRKR  113 (255)
Q Consensus        63 ~k~~WT~eED~~Ll~~v~~~G~~W~~IA~~~pgRT~~qcknRw~~llr~k~  113 (255)
                      ...+||++|+.++++++.+||.+|..||+.+++||..||+++|+.+.++..
T Consensus       132 ~s~~WTeEE~~lFleAl~kYGKDW~~IAk~VgTKT~~QcKnfY~~~kKRln  182 (235)
T 2iw5_B          132 CNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRRFN  182 (235)
T ss_dssp             CCSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHTTTTTT
T ss_pred             cCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHHhh
Confidence            357999999999999999999999999999999999999999998887743

>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=98.71  E-value=2.8e-09  Score=77.86  Aligned_cols=51  Identities=16%  Similarity=0.292  Sum_probs=44.3

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhC---CCChhhhccCCCCCCcccccccccccCC
Q 046570            8 NDRIKGSWSPQEDATLIKLVEQHG---PRNWSMISSGIPGRSGKSCRLRWCNQLS   59 (255)
Q Consensus         8 ~~~~kg~WT~eED~~L~~lv~~~G---~~~W~~IA~~lpgRt~~qCr~Rw~~~L~   59 (255)
                      .....+.||.+||++|.+++++|+   ++.|..||.+| |||..+|+.||..+..
T Consensus         4 ~~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-gRt~~eV~~~y~~L~~   57 (72)
T 2cqq_A            4 GSSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKD   57 (72)
T ss_dssp             CCCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-CCCHHHHHHHHHHHHH
Confidence            455678999999999999999997   45699999998 9999999999976543

>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=98.57  E-value=2.4e-08  Score=72.99  Aligned_cols=49  Identities=16%  Similarity=0.329  Sum_probs=43.6

Q ss_pred             CCCCCHHHHHHHHHHHHHhCC---CChhhhccCCCCCCcccccccccccCCC
Q 046570           12 KGSWSPQEDATLIKLVEQHGP---RNWSMISSGIPGRSGKSCRLRWCNQLSP   60 (255)
Q Consensus        12 kg~WT~eED~~L~~lv~~~G~---~~W~~IA~~lpgRt~~qCr~Rw~~~L~p   60 (255)
                      ...||.+|+++|..++..|+.   +.|..||.+|||||..+|+.||..++..
T Consensus         8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l~~~   59 (73)
T 1wgx_A            8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENPRG   59 (73)
T ss_dssp             SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSSSS
T ss_pred             CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHHHhc
Confidence            467999999999999999964   4699999999999999999999877543

>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*

Probab=98.51  E-value=2.9e-08  Score=86.74  Aligned_cols=50  Identities=18%  Similarity=0.340  Sum_probs=45.9

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCCChhhhccCCCCCCcccccccccccCC
Q 046570            9 DRIKGSWSPQEDATLIKLVEQHGPRNWSMISSGIPGRSGKSCRLRWCNQLS   59 (255)
Q Consensus         9 ~~~kg~WT~eED~~L~~lv~~~G~~~W~~IA~~lpgRt~~qCr~Rw~~~L~   59 (255)
                      ....++||++|+.++++++.+|| ++|..||..|++||..||+.+|.++..
T Consensus       130 ~k~s~~WTeEE~~lFleAl~kYG-KDW~~IAk~VgTKT~~QcKnfY~~~kK  179 (235)
T 2iw5_B          130 QKCNARWTTEEQLLAVQAIRKYG-RDFQAISDVIGNKSVVQVKNFFVNYRR  179 (235)
T ss_dssp             CCCCSSCCHHHHHHHHHHHHHHS-SCHHHHHHHHSSCCHHHHHHHHHHTTT
T ss_pred             CccCCCCCHHHHHHHHHHHHHHC-cCHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence            45678999999999999999999 789999999999999999999987654

>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=98.51  E-value=1.1e-07  Score=69.47  Aligned_cols=49  Identities=16%  Similarity=0.247  Sum_probs=43.9

Q ss_pred             CCCCChhhHHHHHHHHHHcCC----chhhhhccCCCCCHHHHHHHHHHHHHhH
Q 046570           64 HRPFTPAEDSIIIQAHAVHGN----KWATIARSLPGRTDNAIKNHWNSTLRRK  112 (255)
Q Consensus        64 k~~WT~eED~~Ll~~v~~~G~----~W~~IA~~~pgRT~~qcknRw~~llr~k  112 (255)
                      ...||.+|+++|.+++..|+.    +|.+||..+||||..+|+.||..+++..
T Consensus         8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l~~~~   60 (73)
T 1wgx_A            8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENPRGK   60 (73)
T ss_dssp             SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSSSSS
T ss_pred             CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHHHhcc
Confidence            468999999999999999983    6999999999999999999998885543

>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3

Probab=98.45  E-value=4.9e-08  Score=68.51  Aligned_cols=48  Identities=17%  Similarity=0.407  Sum_probs=43.0

Q ss_pred             CCCCCHHHHHHHHHHHHHh--------CCCChhhhcc-CCCCCCcccccccccccCC
Q 046570           12 KGSWSPQEDATLIKLVEQH--------GPRNWSMISS-GIPGRSGKSCRLRWCNQLS   59 (255)
Q Consensus        12 kg~WT~eED~~L~~lv~~~--------G~~~W~~IA~-~lpgRt~~qCr~Rw~~~L~   59 (255)
                      +.+||++||..|+..|..|        |..-|..++. .+|++|-++||+||..+|.
T Consensus         2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l~   58 (59)
T 1fex_A            2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR   58 (59)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHcc
Confidence            5789999999999999999        4345999999 8999999999999998774

>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3

Probab=98.43  E-value=2.2e-07  Score=65.19  Aligned_cols=47  Identities=28%  Similarity=0.489  Sum_probs=42.5

Q ss_pred             CCCCChhhHHHHHHHHHHc--------CCc-hhhhhc-cCCCCCHHHHHHHHHHHHH
Q 046570           64 HRPFTPAEDSIIIQAHAVH--------GNK-WATIAR-SLPGRTDNAIKNHWNSTLR  110 (255)
Q Consensus        64 k~~WT~eED~~Ll~~v~~~--------G~~-W~~IA~-~~pgRT~~qcknRw~~llr  110 (255)
                      +.+||++||..|+..|..|        |+. |..|+. .+|++|-.+||+||.+.|+
T Consensus         2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l~   58 (59)
T 1fex_A            2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR   58 (59)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHcc
Confidence            5689999999999999999        554 999999 8999999999999988764

>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A

Probab=98.27  E-value=1.9e-06  Score=78.55  Aligned_cols=101  Identities=16%  Similarity=0.210  Sum_probs=81.1

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCChhhhccCCCCCCccccccccccc----------------------------------
Q 046570           12 KGSWSPQEDATLIKLVEQHGPRNWSMISSGIPGRSGKSCRLRWCNQ----------------------------------   57 (255)
Q Consensus        12 kg~WT~eED~~L~~lv~~~G~~~W~~IA~~lpgRt~~qCr~Rw~~~----------------------------------   57 (255)
                      -+.||..+...++.++.+||-.+|..||..|+|+|...++..+.-.                                  
T Consensus       110 F~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~Kt~eEV~~Y~~vFw~ry~ei~d~ek~~~~IE~gE~ki~r~~~~~~~l  189 (304)
T 1ofc_X          110 FTAWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNAVFWERCTELQDIERIMGQIERGEGKIQRRLSIKKAL  189 (304)
T ss_dssp             CTTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHHHHHHHGGGCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hcccCHHHHHHHHHHHHHhCHHHHHHHHHHhcCCCHHHHHHHHHHHHHhHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3569999999999999999998999999999999987774432110                                  


Q ss_pred             ---------------C-CCCccCCCCChhhHHHHHHHHHHcCC----chhhhh---c---------cCCCCCHHHHHHHH
Q 046570           58 ---------------L-SPTVQHRPFTPAEDSIIIQAHAVHGN----KWATIA---R---------SLPGRTDNAIKNHW  105 (255)
Q Consensus        58 ---------------L-~p~l~k~~WT~eED~~Ll~~v~~~G~----~W~~IA---~---------~~pgRT~~qcknRw  105 (255)
                                     + .+..+...||++||..||-++.+||-    .|..|.   +         +|..||+.+|..|.
T Consensus       190 ~~Ki~~~~~P~~~L~i~y~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rRc  269 (304)
T 1ofc_X          190 DQKMSRYRAPFHQLRLQYGNNKGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRC  269 (304)
T ss_dssp             HHHHHTCSSHHHHCCCCCTTCCCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHH
T ss_pred             HHHHHHhcCcHHHhccccCCCCCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHH
Confidence                           0 12224468999999999999999995    599996   2         34589999999999


Q ss_pred             HHHHHhH
Q 046570          106 NSTLRRK  112 (255)
Q Consensus       106 ~~llr~k  112 (255)
                      ..|++--
T Consensus       270 ~tLi~~i  276 (304)
T 1ofc_X          270 NTLITLI  276 (304)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9998653

>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}

Probab=98.25  E-value=2.3e-07  Score=67.63  Aligned_cols=44  Identities=11%  Similarity=0.306  Sum_probs=38.9

Q ss_pred             CCCCCHHHHHHHHHHHHHhCC---CChhhhccCCCCCCccccccccc
Q 046570           12 KGSWSPQEDATLIKLVEQHGP---RNWSMISSGIPGRSGKSCRLRWC   55 (255)
Q Consensus        12 kg~WT~eED~~L~~lv~~~G~---~~W~~IA~~lpgRt~~qCr~Rw~   55 (255)
                      .+.||.+|+++|..++..|+.   ..|.+||..|||||..+|+.+|.
T Consensus        20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~   66 (74)
T 4eef_G           20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYE   66 (74)
T ss_dssp             --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred             CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence            467999999999999999964   36999999999999999999985

>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.24  E-value=2e-06  Score=60.86  Aligned_cols=49  Identities=12%  Similarity=0.186  Sum_probs=44.8

Q ss_pred             CCccCCCCChhhHHHHHHHHHHcCCchhhhhc-cCCCCCHHHHHHHHHHH
Q 046570           60 PTVQHRPFTPAEDSIIIQAHAVHGNKWATIAR-SLPGRTDNAIKNHWNST  108 (255)
Q Consensus        60 p~l~k~~WT~eED~~Ll~~v~~~G~~W~~IA~-~~pgRT~~qcknRw~~l  108 (255)
                      |.+....||++|..++.+++.+||.+|..|++ .+|+||..+|...|...
T Consensus         5 p~~~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~w   54 (63)
T 2yqk_A            5 SSGIEKCWTEDEVKRFVKGLRQYGKNFFRIRKELLPNKETGELITFYYYW   54 (63)
T ss_dssp             CCCCCCSCCHHHHHHHHHHHHHTCSCHHHHHHHSCTTSCHHHHHHHHHHH
T ss_pred             CCcCCCCcCHHHHHHHHHHHHHhCccHHHHHHHHcCCCcHHHHHHHHhcc
Confidence            66778899999999999999999999999999 59999999999988653

>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.18  E-value=1.4e-06  Score=61.74  Aligned_cols=51  Identities=20%  Similarity=0.316  Sum_probs=45.8

Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHhCCCChhhhcc-CCCCCCcccccccccc
Q 046570            5 SNNNDRIKGSWSPQEDATLIKLVEQHGPRNWSMISS-GIPGRSGKSCRLRWCN   56 (255)
Q Consensus         5 ~l~~~~~kg~WT~eED~~L~~lv~~~G~~~W~~IA~-~lpgRt~~qCr~Rw~~   56 (255)
                      +..|......||++|-+++.+++.+|| .+|..|+. .|++|+..+|...|..
T Consensus         2 ~~~p~~~~~~WT~eE~~~Fe~~l~~yG-Kdf~~I~~~~v~~Kt~~~~v~fYY~   53 (63)
T 2yqk_A            2 SSGSSGIEKCWTEDEVKRFVKGLRQYG-KNFFRIRKELLPNKETGELITFYYY   53 (63)
T ss_dssp             CCCCCCCCCSCCHHHHHHHHHHHHHTC-SCHHHHHHHSCTTSCHHHHHHHHHH
T ss_pred             CCCCCcCCCCcCHHHHHHHHHHHHHhC-ccHHHHHHHHcCCCcHHHHHHHHhc
Confidence            456788889999999999999999999 68999998 6999999999887754

>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}

Probab=98.06  E-value=1.2e-06  Score=63.85  Aligned_cols=43  Identities=26%  Similarity=0.536  Sum_probs=38.6

Q ss_pred             CCCCChhhHHHHHHHHHHcCC----chhhhhccCCCCCHHHHHHHHH
Q 046570           64 HRPFTPAEDSIIIQAHAVHGN----KWATIARSLPGRTDNAIKNHWN  106 (255)
Q Consensus        64 k~~WT~eED~~Ll~~v~~~G~----~W~~IA~~~pgRT~~qcknRw~  106 (255)
                      ..+||.+|+++|.+++..|+.    +|.+||..+||||..+|+.+|.
T Consensus        20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~   66 (74)
T 4eef_G           20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYE   66 (74)
T ss_dssp             --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred             CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence            458999999999999999984    6999999999999999999884

>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3

Probab=97.98  E-value=1.8e-05  Score=59.71  Aligned_cols=48  Identities=15%  Similarity=0.293  Sum_probs=44.4

Q ss_pred             CCCChhhHHHHHHHHHHcCC---chhhhhccCCCCCHHHHHHHHHHHHHhH
Q 046570           65 RPFTPAEDSIIIQAHAVHGN---KWATIARSLPGRTDNAIKNHWNSTLRRK  112 (255)
Q Consensus        65 ~~WT~eED~~Ll~~v~~~G~---~W~~IA~~~pgRT~~qcknRw~~llr~k  112 (255)
                      --||.++|..||..+++-|.   .|..||..|.+|+++||++||+.+++-.
T Consensus        34 vlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~Lm~Lf   84 (95)
T 1ug2_A           34 VLWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQLF   84 (95)
T ss_dssp             SSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHHHH
T ss_pred             EEeccccCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHHHHHH
Confidence            47999999999999999986   7999999999999999999999998754

>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}

Probab=97.12  E-value=1.6e-06  Score=62.13  Aligned_cols=45  Identities=18%  Similarity=0.383  Sum_probs=41.9

Q ss_pred             CCChhhHHHHHHHHHHcCC---chhhhhccCCCCCHHHHHHHHHHHHHh
Q 046570           66 PFTPAEDSIIIQAHAVHGN---KWATIARSLPGRTDNAIKNHWNSTLRR  111 (255)
Q Consensus        66 ~WT~eED~~Ll~~v~~~G~---~W~~IA~~~pgRT~~qcknRw~~llr~  111 (255)
                      -||.+||..||..+++-|.   .|..||..+ +||++||.+||+.+++-
T Consensus        16 lWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-nks~~QV~~RF~~Lm~L   63 (70)
T 2lr8_A           16 LWTRNDDRVILLECQKRGPSSKTFAYLAAKL-DKNPNQVSERFQQLMKL   63 (70)
Confidence            6999999999999999997   699999999 99999999999998763

>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3

Probab=97.82  E-value=3.1e-05  Score=55.83  Aligned_cols=44  Identities=16%  Similarity=0.248  Sum_probs=41.0

Q ss_pred             CCCCChhhHHHHHHHHHHcCCchhhhhc-cCCCCCHHHHHHHHHH
Q 046570           64 HRPFTPAEDSIIIQAHAVHGNKWATIAR-SLPGRTDNAIKNHWNS  107 (255)
Q Consensus        64 k~~WT~eED~~Ll~~v~~~G~~W~~IA~-~~pgRT~~qcknRw~~  107 (255)
                      ...||++|..++.+++.+||.+|..|++ .+|+||..+|...|..
T Consensus         8 ~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~   52 (70)
T 2crg_A            8 MEEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYYM   52 (70)
T ss_dssp             SCCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHhCccHHHHHHHHcCCCCHHHHHHHHHh
Confidence            4589999999999999999999999999 5999999999999874

>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A

Probab=97.75  E-value=3.3e-05  Score=58.81  Aligned_cols=45  Identities=16%  Similarity=0.107  Sum_probs=42.0

Q ss_pred             CCCCChhhHHHHHHHHHHcCCchhhhhccCCCCCHHHHHHHHHHH
Q 046570           64 HRPFTPAEDSIIIQAHAVHGNKWATIARSLPGRTDNAIKNHWNST  108 (255)
Q Consensus        64 k~~WT~eED~~Ll~~v~~~G~~W~~IA~~~pgRT~~qcknRw~~l  108 (255)
                      ...||++|..++.+++..||.+|..||..+|+||..+|-..|...
T Consensus        43 ~~~WT~eE~~~F~~~~~~~gK~F~~Ia~~l~~Kt~~~cV~~YY~~   87 (94)
T 4a69_C           43 MNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYLT   87 (94)
T ss_dssp             TCCCCHHHHHHHHHHHHHSTTCHHHHHHTCTTCCHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHHHHHhcc
Confidence            468999999999999999999999999999999999999988654

>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*

Probab=97.74  E-value=6e-05  Score=57.28  Aligned_cols=52  Identities=12%  Similarity=0.158  Sum_probs=47.2

Q ss_pred             CCCChhhHHHHHHHHHHcCCchhhhhccCC-----CCCHHHHHHHHHHHHHhHHHhh
Q 046570           65 RPFTPAEDSIIIQAHAVHGNKWATIARSLP-----GRTDNAIKNHWNSTLRRKRMAE  116 (255)
Q Consensus        65 ~~WT~eED~~Ll~~v~~~G~~W~~IA~~~p-----gRT~~qcknRw~~llr~k~~~~  116 (255)
                      ..||.+|...|+++++.|+-+|.-|+..+.     .||..++|.||..+.++.....
T Consensus        31 ~~WT~eETd~LfdLc~~fdlRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~l~~~r   87 (93)
T 4iej_A           31 DAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVR   87 (93)
T ss_dssp             TTBCHHHHHHHHHHHHHTTTCHHHHHHHCCTTTSCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred             CCCCHHHHHHHHHHHHHcCCCeEEEeeccccCCCCCCCHHHHHHHHHHHHHHHHHhh
Confidence            689999999999999999999999999864     7999999999999998876543

>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3

Probab=97.71  E-value=1.7e-05  Score=57.17  Aligned_cols=46  Identities=20%  Similarity=0.226  Sum_probs=41.2

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCChhhhcc-CCCCCCcccccccccc
Q 046570           10 RIKGSWSPQEDATLIKLVEQHGPRNWSMISS-GIPGRSGKSCRLRWCN   56 (255)
Q Consensus        10 ~~kg~WT~eED~~L~~lv~~~G~~~W~~IA~-~lpgRt~~qCr~Rw~~   56 (255)
                      .....||++|-+++..++.+|| .+|..|+. .||+||..+|...|..
T Consensus         6 ~~~~~WT~eE~~~Fe~~l~~yG-Kdf~~I~~~~v~~Kt~~~~v~fYY~   52 (70)
T 2crg_A            6 SGMEEWSASEACLFEEALEKYG-KDFNDIRQDFLPWKSLTSIIEYYYM   52 (70)
T ss_dssp             CSSCCCCHHHHHHHHHHHHHTC-SCHHHHHHTTCSSSCHHHHHHHHHH
T ss_pred             cCCCCCCHHHHHHHHHHHHHhC-ccHHHHHHHHcCCCCHHHHHHHHHh
Confidence            4566899999999999999999 58999999 5999999999988753

>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A

Probab=97.69  E-value=1.9e-05  Score=60.22  Aligned_cols=44  Identities=27%  Similarity=0.428  Sum_probs=40.5

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCChhhhccCCCCCCcccccccccc
Q 046570           12 KGSWSPQEDATLIKLVEQHGPRNWSMISSGIPGRSGKSCRLRWCN   56 (255)
Q Consensus        12 kg~WT~eED~~L~~lv~~~G~~~W~~IA~~lpgRt~~qCr~Rw~~   56 (255)
                      ...||++|-.++.+++..|| .+|..||..||+||..+|...|..
T Consensus        43 ~~~WT~eE~~~F~~~~~~~g-K~F~~Ia~~l~~Kt~~~cV~~YY~   86 (94)
T 4a69_C           43 MNMWSEQEKETFREKFMQHP-KNFGLIASFLERKTVAECVLYYYL   86 (94)
T ss_dssp             TCCCCHHHHHHHHHHHHHST-TCHHHHHHTCTTCCHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHcC-CCHHHHHHHcCCCCHHHHHHHHhc
Confidence            46799999999999999999 689999999999999999988753

>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*

Probab=97.68  E-value=1.2e-05  Score=77.21  Aligned_cols=47  Identities=19%  Similarity=0.372  Sum_probs=43.3

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCChhhhccCCCCCCccccccccccc
Q 046570           10 RIKGSWSPQEDATLIKLVEQHGPRNWSMISSGIPGRSGKSCRLRWCNQ   57 (255)
Q Consensus        10 ~~kg~WT~eED~~L~~lv~~~G~~~W~~IA~~lpgRt~~qCr~Rw~~~   57 (255)
                      ....+||.+|-.+++.++.+|| .+|..||.+|++||..||+.+|.++
T Consensus       378 ~~~~~WT~eE~~~f~~al~~yG-kdw~~IA~~VgTKT~~Qvk~fy~~~  424 (482)
T 2xag_B          378 KCNARWTTEEQLLAVQAIRKYG-RDFQAISDVIGNKSVVQVKNFFVNY  424 (482)
T ss_dssp             CCCSCCCHHHHHHHHHHHHHHT-TCHHHHHHHHSSCCHHHHHHHHHHT
T ss_pred             ccCCCCCHHHHHHHHHHHHHHC-cCHHHHHHHhCCCCHHHHHHHHHHH
Confidence            4568999999999999999999 6899999999999999999998654

>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}

Probab=97.34  E-value=8.8e-05  Score=56.44  Aligned_cols=47  Identities=17%  Similarity=0.291  Sum_probs=41.7

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCChhhhccCC-----CCCCcccccccccccC
Q 046570           11 IKGSWSPQEDATLIKLVEQHGPRNWSMISSGI-----PGRSGKSCRLRWCNQL   58 (255)
Q Consensus        11 ~kg~WT~eED~~L~~lv~~~G~~~W~~IA~~l-----pgRt~~qCr~Rw~~~L   58 (255)
                      ..++||.||++.|.+|+.+|+ ..|..|+..+     ++||..+++.||..+.
T Consensus        29 ~~~~WTkEETd~Lf~L~~~fd-lRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~   80 (93)
T 3hm5_A           29 HDDAWTKAETDHLFDLSRRFD-LRFVVIHDRYDHQQFKKRSVEDLKERYYHIC   80 (93)
T ss_dssp             CBTTBCHHHHHHHHHHHHHTT-TCHHHHHHHSCTTTSCCCCHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHhC-CCeeeehhhhccCCCCCCCHHHHHHHHHHHH
Confidence            448999999999999999999 5799999988     5899999999997643

>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*

Probab=97.11  E-value=0.00028  Score=52.29  Aligned_cols=50  Identities=14%  Similarity=0.355  Sum_probs=41.8

Q ss_pred             CCCCChhhHHHHHHHHHHcC----------CchhhhhccCC----CCCHHHHHHHHHHHHHhHH
Q 046570           64 HRPFTPAEDSIIIQAHAVHG----------NKWATIARSLP----GRTDNAIKNHWNSTLRRKR  113 (255)
Q Consensus        64 k~~WT~eED~~Ll~~v~~~G----------~~W~~IA~~~p----gRT~~qcknRw~~llr~k~  113 (255)
                      ...||.+|-.+||+++..+.          ..|..||..|.    .||+.||+.+|.+|.+...
T Consensus         4 ~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k~Yk   67 (86)
T 2ebi_A            4 AETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLKEFK   67 (86)
T ss_dssp             SCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHC
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Confidence            46899999999999987522          15999999864    7999999999999888754

>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A

Probab=97.08  E-value=0.0015  Score=60.94  Aligned_cols=99  Identities=18%  Similarity=0.315  Sum_probs=78.2

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCChhhhccCCC-CCCccccccccccc----------------------------------
Q 046570           13 GSWSPQEDATLIKLVEQHGPRNWSMISSGIP-GRSGKSCRLRWCNQ----------------------------------   57 (255)
Q Consensus        13 g~WT~eED~~L~~lv~~~G~~~W~~IA~~lp-gRt~~qCr~Rw~~~----------------------------------   57 (255)
                      +.||.-+=..++.++.+||-.+-..||..|. |+|...++ +|...                                  
T Consensus       124 ~~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~-~Y~~vFw~Ry~Ei~d~erii~~IEkgE~ki~r~~~~~~~  202 (374)
T 2y9y_A          124 TNWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVR-AYAKAFWSNIERIEDYEKYLKIIENEEEKIKRVKMQQEA  202 (374)
T ss_dssp             CCSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHH-HHHHHHHHTCSSCSCCTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHH-HHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5699999999999999999889999999997 89987766 33220                                  


Q ss_pred             --------------C----CCCc-cCCCCChhhHHHHHHHHHHcCC----chhhhhcc------------CCCCCHHHHH
Q 046570           58 --------------L----SPTV-QHRPFTPAEDSIIIQAHAVHGN----KWATIARS------------LPGRTDNAIK  102 (255)
Q Consensus        58 --------------L----~p~l-~k~~WT~eED~~Ll~~v~~~G~----~W~~IA~~------------~pgRT~~qck  102 (255)
                                    |    .++. +...||++||..||-++.+||-    .|..|-..            |..||+..|.
T Consensus       203 L~~Ki~~y~~P~~~L~i~y~~~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~  282 (374)
T 2y9y_A          203 LRRKLSEYKNPFFDLKLKHPPSSNNKRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELA  282 (374)
T ss_dssp             HHHHHTTCSSHHHHCCCSSCCCCSSCCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHH
T ss_pred             HHHHHHHccCCHHHceeccCCCCCCCCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHH
Confidence                          0    1111 3458999999999999999994    59999332            3479999999


Q ss_pred             HHHHHHHHhH
Q 046570          103 NHWNSTLRRK  112 (255)
Q Consensus       103 nRw~~llr~k  112 (255)
                      .|...|++--
T Consensus       283 rRc~tLi~~I  292 (374)
T 2y9y_A          283 RRGNTLLQCL  292 (374)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999999754

>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}

Probab=97.04  E-value=0.00051  Score=58.52  Aligned_cols=104  Identities=14%  Similarity=0.152  Sum_probs=69.6

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhC--CCChhhhcc--CCCCCCccccccccccc--------------------------
Q 046570            8 NDRIKGSWSPQEDATLIKLVEQHG--PRNWSMISS--GIPGRSGKSCRLRWCNQ--------------------------   57 (255)
Q Consensus         8 ~~~~kg~WT~eED~~L~~lv~~~G--~~~W~~IA~--~lpgRt~~qCr~Rw~~~--------------------------   57 (255)
                      |.-....||..|-..|+.++.+||  ...|..|+.  .|.+++...+..-+...                          
T Consensus         3 p~~~~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~~Ks~~~v~~y~~~f~~~c~~~~~~~~~~~~~~~~~~~~~~   82 (211)
T 4b4c_A            3 PRENIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKSETDLRRLGELVHNGCIKALKDSSSGTERTGGRLGKVK   82 (211)
T ss_dssp             -----CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCTTSCHHHHHHHHHHHHHHHHHHHC-----------------
T ss_pred             CcccCCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccc
Confidence            344567899999999999999999  457999975  36677764433211100                          


Q ss_pred             -----------------------------------------CC----CCccCCCCChhhHHHHHHHHHHcC-Cchhhhhc
Q 046570           58 -----------------------------------------LS----PTVQHRPFTPAEDSIIIQAHAVHG-NKWATIAR   91 (255)
Q Consensus        58 -----------------------------------------L~----p~l~k~~WT~eED~~Ll~~v~~~G-~~W~~IA~   91 (255)
                                                               +.    +..-...||+++|..||-++.+|| ++|..|-.
T Consensus        83 ~~~~~~~~v~~nA~~il~R~~~l~~L~~~v~~~~~~~~~~~i~~~~~~~~~~~~W~~~~D~~LL~Gi~k~G~g~w~~Ir~  162 (211)
T 4b4c_A           83 GPTFRISGVQVNAKLVISHEEELIPLHKSIPSDPEERKQYTIPCHTKAAHFDIDWGKEDDSNLLIGIYEYGYGSWEMIKM  162 (211)
T ss_dssp             CCEEEETTEEEEHHHHHHHHHHHHHHHHHSCSSHHHHHTCCCCSCCCCCCSSSCCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             chhhhhcccchhHHHHHHhHHHHHHHHHHHHhchhhHHHcCcCCCCCCCCCCCCccHHHHHHHHHHHHHHCcCcHHHHHh
Confidence                                                     00    000123699999999999999999 89999954


Q ss_pred             c----C--------CC--CCHHHHHHHHHHHHHh
Q 046570           92 S----L--------PG--RTDNAIKNHWNSTLRR  111 (255)
Q Consensus        92 ~----~--------pg--RT~~qcknRw~~llr~  111 (255)
                      .    |        ..  +++..+..|...+|+-
T Consensus       163 D~~l~~~~k~~~~~~~k~p~a~~L~rR~~~Ll~~  196 (211)
T 4b4c_A          163 DPDLSLTHKILPDDPDKKPQAKQLQTRADYLIKL  196 (211)
T ss_dssp             CSSSSCTTTSSCSSTTSSCCHHHHHHHHHHHHHH
T ss_pred             ChhcCccccccccccccCCChHHHHHHHHHHHHH
Confidence            2    1        12  4556788998777654

>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}

Probab=95.95  E-value=0.00015  Score=51.98  Aligned_cols=45  Identities=11%  Similarity=0.455  Sum_probs=40.4

Q ss_pred             CCCHHHHHHHHHHHHHhCC--CChhhhccCCCCCCcccccccccccCC
Q 046570           14 SWSPQEDATLIKLVEQHGP--RNWSMISSGIPGRSGKSCRLRWCNQLS   59 (255)
Q Consensus        14 ~WT~eED~~L~~lv~~~G~--~~W~~IA~~lpgRt~~qCr~Rw~~~L~   59 (255)
                      .||.+||..|+..+.+.|+  ..|..||..+ +|++.|+..||+..+.
T Consensus        16 lWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-nks~~QV~~RF~~Lm~   62 (70)
T 2lr8_A           16 LWTRNDDRVILLECQKRGPSSKTFAYLAAKL-DKNPNQVSERFQQLMK   62 (70)
Confidence            5999999999999999986  2599999999 8999999999987654

>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*

Probab=96.80  E-value=0.00016  Score=53.65  Aligned_cols=48  Identities=27%  Similarity=0.467  Sum_probs=38.9

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCC------C---ChhhhccCC----CCCCccccccccccc
Q 046570           10 RIKGSWSPQEDATLIKLVEQHGP------R---NWSMISSGI----PGRSGKSCRLRWCNQ   57 (255)
Q Consensus        10 ~~kg~WT~eED~~L~~lv~~~G~------~---~W~~IA~~l----pgRt~~qCr~Rw~~~   57 (255)
                      .+...||.+|-.+|+.++..+..      .   .|..||..|    -.||+.||+.+|.++
T Consensus         2 kR~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL   62 (86)
T 2ebi_A            2 KRAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNL   62 (86)
T ss_dssp             CCSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence            46788999999999999975311      1   499999987    269999999999874

>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3

Probab=96.20  E-value=0.0022  Score=48.42  Aligned_cols=45  Identities=16%  Similarity=0.409  Sum_probs=40.4

Q ss_pred             CCCCHHHHHHHHHHHHHhCC--CChhhhccCCCCCCccccccccccc
Q 046570           13 GSWSPQEDATLIKLVEQHGP--RNWSMISSGIPGRSGKSCRLRWCNQ   57 (255)
Q Consensus        13 g~WT~eED~~L~~lv~~~G~--~~W~~IA~~lpgRt~~qCr~Rw~~~   57 (255)
                      -.||.++|..|+.++.+.|+  ..|..||..|.+|++.|+..||+.+
T Consensus        34 vlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~L   80 (95)
T 1ug2_A           34 VLWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFREL   80 (95)
T ss_dssp             SSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHH
T ss_pred             EEeccccCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHH
Confidence            35999999999999999986  3699999999999999999999753

>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11

Probab=95.37  E-value=0.029  Score=39.64  Aligned_cols=47  Identities=13%  Similarity=0.037  Sum_probs=40.4

Q ss_pred             cCCCCChhhHHHHHHHHHHcCCc---hhhhhccC--CCCCHHHHHHHHHHHH
Q 046570           63 QHRPFTPAEDSIIIQAHAVHGNK---WATIARSL--PGRTDNAIKNHWNSTL  109 (255)
Q Consensus        63 ~k~~WT~eED~~Ll~~v~~~G~~---W~~IA~~~--pgRT~~qcknRw~~ll  109 (255)
                      .+-.||+|....+++++.++|..   +..|...|  +|.|..+|++|.+++.
T Consensus         6 ~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR   57 (64)
T 1irz_A            6 PRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFR   57 (64)
T ss_dssp             SSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHH
T ss_pred             CCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence            45689999999999999999965   78998875  4899999999987764

>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*

Probab=93.39  E-value=0.043  Score=41.49  Aligned_cols=46  Identities=17%  Similarity=0.308  Sum_probs=39.4

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCChhhhccCC-----CCCCccccccccccc
Q 046570           11 IKGSWSPQEDATLIKLVEQHGPRNWSMISSGI-----PGRSGKSCRLRWCNQ   57 (255)
Q Consensus        11 ~kg~WT~eED~~L~~lv~~~G~~~W~~IA~~l-----pgRt~~qCr~Rw~~~   57 (255)
                      +...||.+|...|..|+.+|. ..|--|+...     +.||..+.+.||..+
T Consensus        29 ~~~~WT~eETd~LfdLc~~fd-lRw~vI~DRy~~~~~~~RtvEdLK~RYY~V   79 (93)
T 4iej_A           29 HDDAWTKAETDHLFDLSRRFD-LRFVVIHDRYDHQQFKKRSVEDLKERYYHI   79 (93)
T ss_dssp             CBTTBCHHHHHHHHHHHHHTT-TCHHHHHHHCCTTTSCCCCHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHcC-CCeEEEeeccccCCCCCCCHHHHHHHHHHH
Confidence            346899999999999999999 5799998765     379999999999764

>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A

Probab=92.88  E-value=0.16  Score=46.03  Aligned_cols=48  Identities=19%  Similarity=0.238  Sum_probs=42.2

Q ss_pred             CCCCChhhHHHHHHHHHHcCC-chhhhhccCCCCCHHHHHHHHHHHHHh
Q 046570           64 HRPFTPAEDSIIIQAHAVHGN-KWATIARSLPGRTDNAIKNHWNSTLRR  111 (255)
Q Consensus        64 k~~WT~eED~~Ll~~v~~~G~-~W~~IA~~~pgRT~~qcknRw~~llr~  111 (255)
                      .+.||..+...++.++.+||. .|..||..|+|+|...|+.++.....+
T Consensus       110 F~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~Kt~eEV~~Y~~vFw~r  158 (304)
T 1ofc_X          110 FTAWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNAVFWER  158 (304)
T ss_dssp             CTTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHHHHHHH
T ss_pred             hcccCHHHHHHHHHHHHHhCHHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Confidence            458999999999999999995 699999999999999998877665544

>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11

Probab=91.78  E-value=0.085  Score=37.21  Aligned_cols=49  Identities=8%  Similarity=0.103  Sum_probs=39.1

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCCCC--hhhhccCC--CCCCcccccccccc
Q 046570            8 NDRIKGSWSPQEDATLIKLVEQHGPRN--WSMISSGI--PGRSGKSCRLRWCN   56 (255)
Q Consensus         8 ~~~~kg~WT~eED~~L~~lv~~~G~~~--W~~IA~~l--pgRt~~qCr~Rw~~   56 (255)
                      +.+.+-.||+|.-..+..+|...|...  +..|...|  +|.|..++.-|.+.
T Consensus         3 ~~k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQK   55 (64)
T 1irz_A            3 QKKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQK   55 (64)
T ss_dssp             CCCSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHH
T ss_pred             CCCCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHH
Confidence            466788899999999999999999432  67887665  68888888776554

>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}

Probab=90.39  E-value=0.3  Score=41.14  Aligned_cols=50  Identities=18%  Similarity=0.230  Sum_probs=41.7

Q ss_pred             cCCCCChhhHHHHHHHHHHcC---Cchhhhhcc--CCCCCHHHHHHHHHHHHHhH
Q 046570           63 QHRPFTPAEDSIIIQAHAVHG---NKWATIARS--LPGRTDNAIKNHWNSTLRRK  112 (255)
Q Consensus        63 ~k~~WT~eED~~Ll~~v~~~G---~~W~~IA~~--~pgRT~~qcknRw~~llr~k  112 (255)
                      ....||..|-..|+.++.+||   .+|..|+..  |.++|...++..+..++...
T Consensus         6 ~~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~~Ks~~~v~~y~~~f~~~c   60 (211)
T 4b4c_A            6 NIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKSETDLRRLGELVHNGC   60 (211)
T ss_dssp             --CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCTTSCHHHHHHHHHHHHHHH
T ss_pred             cCCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccCCCCHHHHHHHHHHHHHHH
Confidence            457899999999999999999   579999864  78999999998777766553

>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A

Probab=90.12  E-value=0.18  Score=44.98  Aligned_cols=28  Identities=29%  Similarity=0.572  Sum_probs=25.7

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCChhhhcc
Q 046570           13 GSWSPQEDATLIKLVEQHGPRNWSMISS   40 (255)
Q Consensus        13 g~WT~eED~~L~~lv~~~G~~~W~~IA~   40 (255)
                      ..|+.+||..|+..|.+||.++|..|-.
T Consensus       169 c~W~~~dD~~LLvGIykyGyG~We~Ir~  196 (270)
T 2xb0_X          169 SNWTKEEDEKLLIGVFKYGYGSWTQIRD  196 (270)
T ss_dssp             SCCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             CCcChHHHHHHHHHHHHHcCCcHHHHhc
Confidence            3599999999999999999999999954

>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A

Probab=86.83  E-value=0.37  Score=42.93  Aligned_cols=27  Identities=22%  Similarity=0.402  Sum_probs=24.5

Q ss_pred             CCChhhHHHHHHHHHHcC-Cchhhhhcc
Q 046570           66 PFTPAEDSIIIQAHAVHG-NKWATIARS   92 (255)
Q Consensus        66 ~WT~eED~~Ll~~v~~~G-~~W~~IA~~   92 (255)
                      .|+.+||..||.+|.+|| +.|.+|..-
T Consensus       170 ~W~~~dD~~LLvGIykyGyG~We~Ir~D  197 (270)
T 2xb0_X          170 NWTKEEDEKLLIGVFKYGYGSWTQIRDD  197 (270)
T ss_dssp             CCCHHHHHHHHHHHHHHCTTCHHHHHHC
T ss_pred             CcChHHHHHHHHHHHHHcCCcHHHHhcC
Confidence            599999999999999999 889999653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	255
d1igna1	86	a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Ba	4e-20
d1igna1	86	a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Ba	8e-10
d1gvda_	52	a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus	1e-19
d1gvda_	52	a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus	2e-10
d1guua_	50	a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus	2e-19
d1guua_	50	a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus	6e-11
d1gv2a2	47	a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mou	2e-15
d1gv2a2	47	a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mou	5e-12
d2ckxa1	83	a.4.1.3 (A:578-660) Telomere binding protein TBP1	4e-14
d2ckxa1	83	a.4.1.3 (A:578-660) Telomere binding protein TBP1	5e-05
d1xc5a1	68	a.4.1.3 (A:413-480) Nuclear receptor corepressor 2	3e-13
d1xc5a1	68	a.4.1.3 (A:413-480) Nuclear receptor corepressor 2	8e-11
d1w0ta_	52	a.4.1.4 (A:) DNA-binding domain of human telomeric	6e-13
d1w0ta_	52	a.4.1.4 (A:) DNA-binding domain of human telomeric	1e-05
d2iw5b1	65	a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Hu	3e-12
d2iw5b1	65	a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Hu	5e-11
d1w0ua_	55	a.4.1.4 (A:) Telomeric repeat binding factor 2, TR	1e-11
d1w0ua_	55	a.4.1.4 (A:) Telomeric repeat binding factor 2, TR	8e-06
d2cu7a1	65	a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sap	3e-11
d2cu7a1	65	a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sap	6e-11
d1x41a1	47	a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, T	3e-11
d1x41a1	47	a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, T	4e-05
d2cqra1	60	a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1	7e-11
d2cqra1	60	a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1	6e-08
d2cjja1	63	a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Anti	6e-10
d2cjja1	63	a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Anti	5e-09
d1ug2a_	95	a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mu	8e-09
d1ug2a_	95	a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mu	6e-08

>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 86

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 80.0 bits (197), Expect = 4e-20
 Identities = 15/74 (20%), Positives = 32/74 (43%), Gaps = 5/74 (6%)

Query: 12 KGSWSPQEDATLIKLVEQHGPR-----NWSMISSGIPGRSGKSCRLRWCNQLSPTVQHRP 66
          K S++ +ED  ++ +V ++  R      +  IS  +P  +G S R R+   LS  +++  
Sbjct: 1  KASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLEYVY 60

Query: 67 FTPAEDSIIIQAHA 80
                 ++     
Sbjct: 61 EVDKFGKLVRDDDG 74

>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 86

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 52.3 bits (125), Expect = 8e-10
 Identities = 11/54 (20%), Positives = 23/54 (42%), Gaps = 6/54 (11%)

Query: 65  RPFTPAEDSIIIQAHAVHGNK------WATIARSLPGRTDNAIKNHWNSTLRRK 112
             FT  ED  I+     +  +      +  I+  +P  T N+I++ +   L ++
Sbjct: 2   ASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKR 55

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 52

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 77.5 bits (191), Expect = 1e-19
 Identities = 27/50 (54%), Positives = 37/50 (74%)

Query: 11 IKGSWSPQEDATLIKLVEQHGPRNWSMISSGIPGRSGKSCRLRWCNQLSP 60
          IKG W+ +ED  LIKLV+++GP+ WS+I+  + GR GK CR RW N L+P
Sbjct: 2  IKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNP 51

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 52

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 53.2 bits (128), Expect = 2e-10
 Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 1/46 (2%)

Query: 66  PFTPAEDSIIIQAHAVHG-NKWATIARSLPGRTDNAIKNHWNSTLR 110
           P+T  ED  +I+    +G  +W+ IA+ L GR     +  W++ L 
Sbjct: 5   PWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLN 50

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 50

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 77.1 bits (190), Expect = 2e-19
 Identities = 20/49 (40%), Positives = 31/49 (63%)

Query: 12 KGSWSPQEDATLIKLVEQHGPRNWSMISSGIPGRSGKSCRLRWCNQLSP 60
          K  W+ +ED  L KLVEQ+G  +W +I++ +P R+   C+ RW   L+P
Sbjct: 1  KTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNP 49

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 50

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 54.0 bits (130), Expect = 6e-11
 Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 1/46 (2%)

Query: 66  PFTPAEDSIIIQAHAVHG-NKWATIARSLPGRTDNAIKNHWNSTLR 110
            +T  ED  + +    +G + W  IA  LP RTD   ++ W   L 
Sbjct: 3   RWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLN 48

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 47

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 66.0 bits (161), Expect = 2e-15
 Identities = 31/45 (68%), Positives = 35/45 (77%)

Query: 66  PFTPAEDSIIIQAHAVHGNKWATIARSLPGRTDNAIKNHWNSTLR 110
            +T  ED II QAH   GN+WA IA+ LPGRTDNAIKNHWNST+R
Sbjct: 3   SWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMR 47

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 47

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 57.1 bits (138), Expect = 5e-12
 Identities = 11/47 (23%), Positives = 25/47 (53%), Gaps = 1/47 (2%)

Query: 12 KGSWSPQEDATLIKLVEQHGPRNWSMISSGIPGRSGKSCRLRWCNQL 58
          K SW+ +ED  + +  ++     W+ I+  +PGR+  + +  W + +
Sbjct: 1  KTSWTEEEDRIIYQAHKRL-GNRWAEIAKLLPGRTDNAIKNHWNSTM 46

>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 83

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Telomere binding protein TBP1
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

 Score = 63.9 bits (155), Expect = 4e-14
 Identities = 14/81 (17%), Positives = 28/81 (34%), Gaps = 10/81 (12%)

Query: 15 WSPQEDATLIKLVEQHGPRNWSMI----SSGIPGRSGKSCRLRWCNQL-----SPTVQHR 65
          +S  E   L++ VE  G   W  +          R+    + +W   +     +P  +  
Sbjct: 3  FSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRG 62

Query: 66 PFTPAED-SIIIQAHAVHGNK 85
             P +    ++ AHA    +
Sbjct: 63 EPVPQDLLDRVLAAHAYWSQQ 83

>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 83

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Telomere binding protein TBP1
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

 Score = 38.9 bits (90), Expect = 5e-05
 Identities = 14/72 (19%), Positives = 27/72 (37%), Gaps = 5/72 (6%)

Query: 65  RPFTPAEDSIIIQAHAVHGNK-WATIAR----SLPGRTDNAIKNHWNSTLRRKRMAELSS 119
           RPF+ AE   +++A    G   W  +      +   RT   +K+ W + +    +A    
Sbjct: 1   RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQR 60

Query: 120 ASSESNSVMMKR 131
                   ++ R
Sbjct: 61  RGEPVPQDLLDR 72

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 68

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.1 bits (148), Expect = 3e-13
 Identities = 7/48 (14%), Positives = 16/48 (33%)

Query: 66  PFTPAEDSIIIQAHAVHGNKWATIARSLPGRTDNAIKNHWNSTLRRKR 113
            ++  E     +    H   +  IA  L  +T      ++  T + + 
Sbjct: 19  MWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYLTKKNEN 66

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 68

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.5 bits (131), Expect = 8e-11
 Identities = 12/47 (25%), Positives = 23/47 (48%), Gaps = 1/47 (2%)

Query: 10 RIKGSWSPQEDATLIKLVEQHGPRNWSMISSGIPGRSGKSCRLRWCN 56
          ++   WS QE  T  +   QH  +N+ +I+S +  ++   C L +  
Sbjct: 15 QVMNMWSEQEKETFREKFMQHP-KNFGLIASFLERKTVAECVLYYYL 60

>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]} Length = 52

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.9 bits (145), Expect = 6e-13
 Identities = 13/47 (27%), Positives = 20/47 (42%), Gaps = 2/47 (4%)

Query: 12 KGSWSPQEDATLIKLVEQHGPRNWSMISSGIP--GRSGKSCRLRWCN 56
          + +W  +ED  L   V ++G  NWS I        R+    + RW  
Sbjct: 2  RQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRT 48

>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]} Length = 52

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.5 bits (92), Expect = 1e-05
 Identities = 9/51 (17%), Positives = 19/51 (37%), Gaps = 3/51 (5%)

Query: 63  QHRPFTPAEDSIIIQAHAVHGNK-WATIARSLP--GRTDNAIKNHWNSTLR 110
           + + +   ED  +      +G   W+ I        RT   +K+ W +  +
Sbjct: 1   KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK 51

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.3 bits (141), Expect = 3e-12
 Identities = 11/52 (21%), Positives = 25/52 (48%)

Query: 66  PFTPAEDSIIIQAHAVHGNKWATIARSLPGRTDNAIKNHWNSTLRRKRMAEL 117
            +T  E  + +QA   +G  +  I+  +  ++   +KN + +  RR  + E+
Sbjct: 7   RWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRRFNIDEV 58

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.8 bits (132), Expect = 5e-11
 Identities = 8/47 (17%), Positives = 21/47 (44%), Gaps = 1/47 (2%)

Query: 10 RIKGSWSPQEDATLIKLVEQHGPRNWSMISSGIPGRSGKSCRLRWCN 56
          +    W+ +E    ++ + ++G  ++  IS  I  +S    +  + N
Sbjct: 3  KCNARWTTEEQLLAVQAIRKYGR-DFQAISDVIGNKSVVQVKNFFVN 48

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]} Length = 55

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.1 bits (135), Expect = 1e-11
 Identities = 12/51 (23%), Positives = 21/51 (41%), Gaps = 2/51 (3%)

Query: 12 KGSWSPQEDATLIKLVEQHGPRNWSMISS--GIPGRSGKSCRLRWCNQLSP 60
          K  W+ +E   +   V+++G  NW+ IS       R+    + RW      
Sbjct: 2  KQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRL 52

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]} Length = 55

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (94), Expect = 8e-06
 Identities = 12/53 (22%), Positives = 22/53 (41%), Gaps = 3/53 (5%)

Query: 63  QHRPFTPAEDSIIIQAHAVHGNK-WATIARS--LPGRTDNAIKNHWNSTLRRK 112
           + + +T  E   +      +G   WA I+++     RT   IK+ W +  R  
Sbjct: 1   KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLG 53

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.7 bits (134), Expect = 3e-11
 Identities = 11/48 (22%), Positives = 21/48 (43%)

Query: 66  PFTPAEDSIIIQAHAVHGNKWATIARSLPGRTDNAIKNHWNSTLRRKR 113
            +T  E  +  Q  A  G +W  I++ +  RT   +K++     + K 
Sbjct: 4   KWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKV 51

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.5 bits (131), Expect = 6e-11
 Identities = 9/58 (15%), Positives = 19/58 (32%), Gaps = 1/58 (1%)

Query: 15 WSPQEDATLIKLVEQHGPRNWSMISSGIPGRSGKSCRLRWCNQLSPTVQHRPFTPAED 72
          W+ +E     + + +   R W+ IS  I  R+    +          V+        +
Sbjct: 5  WTIEEKELFEQGLAKF-GRRWTKISKLIGSRTVLQVKSYARQYFKNKVKCGLDKETPN 61

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]} Length = 47

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.0 bits (132), Expect = 3e-11
 Identities = 10/43 (23%), Positives = 22/43 (51%)

Query: 14 SWSPQEDATLIKLVEQHGPRNWSMISSGIPGRSGKSCRLRWCN 56
          SW+ QE+  L++ V   G  NW  +++ +  ++ + C   +  
Sbjct: 3  SWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMK 45

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]} Length = 47

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (88), Expect = 4e-05
 Identities = 8/41 (19%), Positives = 18/41 (43%), Gaps = 1/41 (2%)

Query: 67  FTPAEDSIIIQAHAVHGNK-WATIARSLPGRTDNAIKNHWN 106
           +T  E+  +++A    G   W  +A  +  +T    + H+ 
Sbjct: 4   WTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYM 44

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 60

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.3 bits (130), Expect = 7e-11
 Identities = 9/55 (16%), Positives = 20/55 (36%), Gaps = 3/55 (5%)

Query: 3  SNSNNNDRIKGSWSPQEDATLIKLVEQHG---PRNWSMISSGIPGRSGKSCRLRW 54
                   +  W+  +   L   ++Q+       W  I+  +P +S + C  R+
Sbjct: 3  LRKERARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARY 57

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 60

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.2 bits (109), Expect = 6e-08
 Identities = 8/51 (15%), Positives = 18/51 (35%), Gaps = 4/51 (7%)

Query: 59  SPTVQHRPFTPAEDSIIIQAHAVHG----NKWATIARSLPGRTDNAIKNHW 105
                  P+T  +  ++  A   +     + W  IAR +P ++       +
Sbjct: 7   RARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARY 57

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]} Length = 63

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

 Score = 51.9 bits (124), Expect = 6e-10
 Identities = 7/45 (15%), Positives = 20/45 (44%), Gaps = 3/45 (6%)

Query: 14 SWSPQEDATLIKLVEQHG---PRNWSMISSGIPGRSGKSCRLRWC 55
           WS +E+    + +  +    P  W+ ++  + GR+ +  +  + 
Sbjct: 3  PWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYE 47

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]} Length = 63

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

 Score = 49.5 bits (118), Expect = 5e-09
 Identities = 15/50 (30%), Positives = 28/50 (56%), Gaps = 4/50 (8%)

Query: 65  RPFTPAEDSIIIQAHAVHG----NKWATIARSLPGRTDNAIKNHWNSTLR 110
           RP++  E+    +A AV+     ++WA +AR++ GRT   +K H+   + 
Sbjct: 2   RPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVE 51

>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]} Length = 95

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: 2610100b20rik gene product
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 49.5 bits (118), Expect = 8e-09
 Identities = 9/56 (16%), Positives = 25/56 (44%), Gaps = 2/56 (3%)

Query: 1  TNSNSNNNDRIKGSWSPQEDATLIKLVEQHGPRN--WSMISSGIPGRSGKSCRLRW 54
           NS  ++       W+ + D  ++ + ++ G +   +S+IS  +  ++      R+
Sbjct: 22 NNSKVSSTGEKVVLWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRF 77

>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]} Length = 95

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: 2610100b20rik gene product
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 47.2 bits (112), Expect = 6e-08
 Identities = 14/87 (16%), Positives = 32/87 (36%), Gaps = 3/87 (3%)

Query: 39  SSGIPGRSGKSCRLRWCNQLSPTVQHRPFTPAEDSIIIQAHAVHGNK---WATIARSLPG 95
           +  +P  S  +         S   +   +T   D +I+      G +   ++ I++ L  
Sbjct: 8   AGALPKASEATVCANNSKVSSTGEKVVLWTREADRVILTMCQEQGAQPHTFSVISQQLGN 67

Query: 96  RTDNAIKNHWNSTLRRKRMAELSSASS 122
           +T   + + +   ++    A  S  SS
Sbjct: 68  KTPVEVSHRFRELMQLFHTACESGPSS 94

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	255
d1igna1	86	DNA-binding domain of rap1 {Baker's yeast (Sacchar	99.75
d1gvda_	52	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.75
d1guua_	50	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.71
d1gv2a2	47	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.68
d1gvda_	52	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.63
d2ckxa1	83	Telomere binding protein TBP1 {Tobacco (Nicotiana	99.61
d1w0ua_	55	Telomeric repeat binding factor 2, TRF2 {Human (Ho	99.58
d1gv2a2	47	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.55
d1guua_	50	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.55
d1w0ta_	52	DNA-binding domain of human telomeric protein, hTR	99.52
d1x41a1	47	Transcriptional adaptor 2-like, TADA2L, isoform b	99.49
d1w0ta_	52	DNA-binding domain of human telomeric protein, hTR	99.47
d1w0ua_	55	Telomeric repeat binding factor 2, TRF2 {Human (Ho	99.44
d2cu7a1	65	MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960	99.44
d1igna1	86	DNA-binding domain of rap1 {Baker's yeast (Sacchar	99.43
d2cqra1	60	DnaJ homolog subfamily C member 1 {Human (Homo sap	99.42
d1x41a1	47	Transcriptional adaptor 2-like, TADA2L, isoform b	99.39
d2cu7a1	65	MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960	99.38
d2cqra1	60	DnaJ homolog subfamily C member 1 {Human (Homo sap	99.37
d1ug2a_	95	2610100b20rik gene product {Mouse (Mus musculus) [	99.35
d2cjja1	63	Radialis {Garden snapdragon (Antirrhinum majus) [T	99.32
d2cjja1	63	Radialis {Garden snapdragon (Antirrhinum majus) [T	99.28
d1xc5a1	68	Nuclear receptor corepressor 2 {Human (Homo sapien	99.2
d2iw5b1	65	REST corepressor 1, CoREST {Human (Homo sapiens) [	99.19
d2ckxa1	83	Telomere binding protein TBP1 {Tobacco (Nicotiana	99.19
d2iw5b1	65	REST corepressor 1, CoREST {Human (Homo sapiens) [	99.09
d1xc5a1	68	Nuclear receptor corepressor 2 {Human (Homo sapien	99.05
d1ug2a_	95	2610100b20rik gene product {Mouse (Mus musculus) [	98.87
d2crga1	57	Metastasis associated protein MTA3 {Mouse (Mus mus	98.29
d2cqqa1	59	DnaJ homolog subfamily C member 1 {Human (Homo sap	98.13
d2crga1	57	Metastasis associated protein MTA3 {Mouse (Mus mus	98.09
d2cqqa1	59	DnaJ homolog subfamily C member 1 {Human (Homo sap	98.04
d1x58a1	49	Hypothetical protein 4930532d21rik {Mouse (Mus mus	97.6
d1fexa_	59	Rap1 {Human (Homo sapiens) [TaxId: 9606]}	97.41
d1irza_	64	Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId	97.11
d1fexa_	59	Rap1 {Human (Homo sapiens) [TaxId: 9606]}	96.84
d1irza_	64	Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId	96.56
d1wgxa_	73	Hypothetical protein C14orf106 (KIAA1903) {Human (	96.27
d1x58a1	49	Hypothetical protein 4930532d21rik {Mouse (Mus mus	94.89
d1wgxa_	73	Hypothetical protein C14orf106 (KIAA1903) {Human (	94.31
d1ofcx1	52	SANT domain of the nucleosome remodeling ATPase IS	90.16
d1ofcx1	52	SANT domain of the nucleosome remodeling ATPase IS	88.78
d1ofcx2	128	SLIDE domain of the nucleosome remodeling ATPase I	87.57
d1ofcx2	128	SLIDE domain of the nucleosome remodeling ATPase I	81.28

>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.75  E-value=6e-21  Score=142.84  Aligned_cols=69  Identities=22%  Similarity=0.301  Sum_probs=64.3

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCC-----ChhhhccCCCCCCcccccccccccCCCCccCCCCChhhHHHHHHHHH
Q 046570           12 KGSWSPQEDATLIKLVEQHGPR-----NWSMISSGIPGRSGKSCRLRWCNQLSPTVQHRPFTPAEDSIIIQAHA   80 (255)
Q Consensus        12 kg~WT~eED~~L~~lv~~~G~~-----~W~~IA~~lpgRt~~qCr~Rw~~~L~p~l~k~~WT~eED~~Ll~~v~   80 (255)
                      |++||+|||++|+++|.+||..     +|..||..|||||+.||+.||.++|+|.+++++||++||.+|+..+.
T Consensus         1 k~~WT~eED~~L~~~v~~~g~~~~~~~~W~~IA~~lpgRt~~qcr~Rw~~~L~p~l~~~~~t~~ed~ll~d~~~   74 (86)
T d1igna1           1 KASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVRDDDG   74 (86)
T ss_dssp             CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCCCEECBCTTSCBCBCTTS
T ss_pred             CCCCCHHHHHHHHHHHHHhCcCcCCccCHHHHHHHcCCCCHHHHHHHHHHHcCccccCCCCCCchhHHHHHHhh
Confidence            6899999999999999999964     39999999999999999999999999999999999999999876553

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.75  E-value=2.2e-19  Score=122.16  Aligned_cols=52  Identities=52%  Similarity=1.059  Sum_probs=49.9

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCChhhhccCCCCCCcccccccccccCCCC
Q 046570           10 RIKGSWSPQEDATLIKLVEQHGPRNWSMISSGIPGRSGKSCRLRWCNQLSPT   61 (255)
Q Consensus        10 ~~kg~WT~eED~~L~~lv~~~G~~~W~~IA~~lpgRt~~qCr~Rw~~~L~p~   61 (255)
                      ++||+||++||++|+++|.+||..+|..||+.|++||+.||+.||.++|+|.
T Consensus         1 l~rg~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qc~~Rw~~~L~P~   52 (52)
T d1gvda_           1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPE   52 (52)
T ss_dssp             CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTSCC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHhhCCCC
Confidence            4799999999999999999999889999999999999999999999999984

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.71  E-value=1.2e-18  Score=117.51  Aligned_cols=50  Identities=40%  Similarity=0.854  Sum_probs=48.2

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCChhhhccCCCCCCcccccccccccCCCC
Q 046570           12 KGSWSPQEDATLIKLVEQHGPRNWSMISSGIPGRSGKSCRLRWCNQLSPT   61 (255)
Q Consensus        12 kg~WT~eED~~L~~lv~~~G~~~W~~IA~~lpgRt~~qCr~Rw~~~L~p~   61 (255)
                      |++||++||++|+.+|.+||.++|..||..|||||+.||+.||.++|+|.
T Consensus         1 k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P~   50 (50)
T d1guua_           1 KTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNPE   50 (50)
T ss_dssp             CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHSCC
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHhhCCCC
Confidence            68999999999999999999889999999999999999999999999984

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.68  E-value=1.5e-17  Score=110.70  Aligned_cols=47  Identities=66%  Similarity=1.054  Sum_probs=45.0

Q ss_pred             CCCCChhhHHHHHHHHHHcCCchhhhhccCCCCCHHHHHHHHHHHHH
Q 046570           64 HRPFTPAEDSIIIQAHAVHGNKWATIARSLPGRTDNAIKNHWNSTLR  110 (255)
Q Consensus        64 k~~WT~eED~~Ll~~v~~~G~~W~~IA~~~pgRT~~qcknRw~~llr  110 (255)
                      +++||+|||++|+++|.+||++|+.||.+|||||+++|++||+.++|
T Consensus         1 K~~WT~eED~~L~~~v~~~G~~W~~Ia~~~~gRt~~~~knr~~~~lr   47 (47)
T d1gv2a2           1 KTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMR   47 (47)
T ss_dssp             CCCCCHHHHHHHHHHHHHHSSCHHHHHTTCTTCCHHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHHhhHHHHHHhHcCCCCHHHHHHHHHHHcC
Confidence            57999999999999999999999999999999999999999999875

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.63  E-value=1e-16  Score=108.72  Aligned_cols=50  Identities=28%  Similarity=0.609  Sum_probs=46.6

Q ss_pred             ccCCCCChhhHHHHHHHHHHcC-CchhhhhccCCCCCHHHHHHHHHHHHHh
Q 046570           62 VQHRPFTPAEDSIIIQAHAVHG-NKWATIARSLPGRTDNAIKNHWNSTLRR  111 (255)
Q Consensus        62 l~k~~WT~eED~~Ll~~v~~~G-~~W~~IA~~~pgRT~~qcknRw~~llr~  111 (255)
                      +++|+||++||++|+++|.+|| .+|..||+.|||||+.||++||..+|+.
T Consensus         1 l~rg~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qc~~Rw~~~L~P   51 (52)
T d1gvda_           1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNP   51 (52)
T ss_dssp             CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTSC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHhhCCC
Confidence            4689999999999999999999 5799999999999999999999988753

>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Telomere binding protein TBP1
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=99.61  E-value=7e-17  Score=119.61  Aligned_cols=73  Identities=16%  Similarity=0.337  Sum_probs=61.7

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCChhhhccC----CCCCCcccccccccccC-----CCCccCCCCChhhHHHHHHHHHHcC
Q 046570           13 GSWSPQEDATLIKLVEQHGPRNWSMISSG----IPGRSGKSCRLRWCNQL-----SPTVQHRPFTPAEDSIIIQAHAVHG   83 (255)
Q Consensus        13 g~WT~eED~~L~~lv~~~G~~~W~~IA~~----lpgRt~~qCr~Rw~~~L-----~p~l~k~~WT~eED~~Ll~~v~~~G   83 (255)
                      .+||++||+.|+.+|.+||+++|..|+..    +++||+.||++||+++|     .+..+++.|+++|   |+..|..++
T Consensus         1 r~WT~eEd~~L~~~V~~~G~~~W~~I~~~~~~~~~~Rt~~qck~RWrn~l~~~~~~~~~~~~~~~p~e---ll~~v~~~~   77 (83)
T d2ckxa1           1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQD---LLDRVLAAH   77 (83)
T ss_dssp             CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHHSCGGGCCSSCCCHH---HHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHCcccHHHHHHHHHhhccCCCHHHHHHHHHHHhhhhccCcccccCCCCCHH---HHHHHHHHH
Confidence            48999999999999999999899999874    68999999999999988     4677788999877   455555566


Q ss_pred             Cchhh
Q 046570           84 NKWAT   88 (255)
Q Consensus        84 ~~W~~   88 (255)
                      .+|++
T Consensus        78 ~~wsq   82 (83)
T d2ckxa1          78 AYWSQ   82 (83)
T ss_dssp             HHHHH
T ss_pred             HHHhc
Confidence            67764

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=1.6e-16  Score=108.97  Aligned_cols=53  Identities=23%  Similarity=0.376  Sum_probs=48.7

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCChhhhccC--CCCCCcccccccccccCCCCcc
Q 046570           11 IKGSWSPQEDATLIKLVEQHGPRNWSMISSG--IPGRSGKSCRLRWCNQLSPTVQ   63 (255)
Q Consensus        11 ~kg~WT~eED~~L~~lv~~~G~~~W~~IA~~--lpgRt~~qCr~Rw~~~L~p~l~   63 (255)
                      ++++||++||++|+.+|.+||+++|..||..  |++||+.||++||++++++.++
T Consensus         1 Kr~~WT~eEd~~L~~~V~~~G~~~W~~I~~~~~~~~Rt~~q~k~Rwrn~~k~~~N   55 (55)
T d1w0ua_           1 KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGMN   55 (55)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTCC
T ss_pred             CCCCCCHHHHHHHHHHHHHhCCChHHHHHhhcCCCCcCHHHHHHHHHHHhcCCCC
Confidence            5789999999999999999998899999986  5799999999999999988764

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.55  E-value=7.6e-16  Score=102.34  Aligned_cols=47  Identities=26%  Similarity=0.638  Sum_probs=44.0

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCChhhhccCCCCCCcccccccccccCC
Q 046570           12 KGSWSPQEDATLIKLVEQHGPRNWSMISSGIPGRSGKSCRLRWCNQLS   59 (255)
Q Consensus        12 kg~WT~eED~~L~~lv~~~G~~~W~~IA~~lpgRt~~qCr~Rw~~~L~   59 (255)
                      |++||+|||+.|+.+|.+||. +|..||.+|||||+.||+.||.++|.
T Consensus         1 K~~WT~eED~~L~~~v~~~G~-~W~~Ia~~~~gRt~~~~knr~~~~lr   47 (47)
T d1gv2a2           1 KTSWTEEEDRIIYQAHKRLGN-RWAEIAKLLPGRTDNAIKNHWNSTMR   47 (47)
T ss_dssp             CCCCCHHHHHHHHHHHHHHSS-CHHHHHTTCTTCCHHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHHhh-HHHHHHhHcCCCCHHHHHHHHHHHcC
Confidence            689999999999999999995 79999999999999999999988763

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.55  E-value=2.3e-15  Score=101.09  Aligned_cols=48  Identities=29%  Similarity=0.555  Sum_probs=44.8

Q ss_pred             CCCCChhhHHHHHHHHHHcC-CchhhhhccCCCCCHHHHHHHHHHHHHh
Q 046570           64 HRPFTPAEDSIIIQAHAVHG-NKWATIARSLPGRTDNAIKNHWNSTLRR  111 (255)
Q Consensus        64 k~~WT~eED~~Ll~~v~~~G-~~W~~IA~~~pgRT~~qcknRw~~llr~  111 (255)
                      +++||++||++|+.+|.+|| ++|..||.+|||||+.||++||.++|..
T Consensus         1 k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P   49 (50)
T d1guua_           1 KTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNP   49 (50)
T ss_dssp             CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHSC
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHhhCCC
Confidence            57899999999999999999 5799999999999999999999998753

>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=1.2e-15  Score=103.43  Aligned_cols=48  Identities=27%  Similarity=0.378  Sum_probs=44.0

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCChhhhccCC--CCCCcccccccccccC
Q 046570           11 IKGSWSPQEDATLIKLVEQHGPRNWSMISSGI--PGRSGKSCRLRWCNQL   58 (255)
Q Consensus        11 ~kg~WT~eED~~L~~lv~~~G~~~W~~IA~~l--pgRt~~qCr~Rw~~~L   58 (255)
                      ++++||++||+.|+++|.+||+++|..||..+  ++||+.||++||.++.
T Consensus         1 kr~~WT~eED~~L~~~v~~~G~~~W~~I~~~~~~~~Rt~~q~r~Rw~nl~   50 (52)
T d1w0ta_           1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMK   50 (52)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHCCCCHHHHHhhcCCCCCCHHHHHHHHHHHH
Confidence            58999999999999999999988999999864  5999999999998864

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=1.8e-15  Score=100.44  Aligned_cols=44  Identities=23%  Similarity=0.542  Sum_probs=42.2

Q ss_pred             CCCHHHHHHHHHHHHHhCCCChhhhccCCCCCCccccccccccc
Q 046570           14 SWSPQEDATLIKLVEQHGPRNWSMISSGIPGRSGKSCRLRWCNQ   57 (255)
Q Consensus        14 ~WT~eED~~L~~lv~~~G~~~W~~IA~~lpgRt~~qCr~Rw~~~   57 (255)
                      .||++||.+|+++|.+||.++|..||.+|++||+.||+.||.++
T Consensus         3 ~Wt~eEd~~L~~~v~~~G~~nW~~Ia~~~~~Rt~~Qcr~r~~~~   46 (47)
T d1x41a1           3 SWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKY   46 (47)
T ss_dssp             SSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHCCccHHHHHHHcCCCCHHHHHHHHHHh
Confidence            49999999999999999998999999999999999999999875

>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=2.6e-14  Score=96.62  Aligned_cols=48  Identities=19%  Similarity=0.383  Sum_probs=43.5

Q ss_pred             cCCCCChhhHHHHHHHHHHcCC-chhhhhccCC--CCCHHHHHHHHHHHHH
Q 046570           63 QHRPFTPAEDSIIIQAHAVHGN-KWATIARSLP--GRTDNAIKNHWNSTLR  110 (255)
Q Consensus        63 ~k~~WT~eED~~Ll~~v~~~G~-~W~~IA~~~p--gRT~~qcknRw~~llr  110 (255)
                      ++++||++||+.|+++|.+||. +|..||..++  +||+.||++||+++.+
T Consensus         1 kr~~WT~eED~~L~~~v~~~G~~~W~~I~~~~~~~~Rt~~q~r~Rw~nl~K   51 (52)
T d1w0ta_           1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK   51 (52)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHT
T ss_pred             CCCCCCHHHHHHHHHHHHHHCCCCHHHHHhhcCCCCCCHHHHHHHHHHHHC
Confidence            4689999999999999999995 8999998754  9999999999998764

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=5.6e-14  Score=96.00  Aligned_cols=50  Identities=24%  Similarity=0.454  Sum_probs=45.1

Q ss_pred             cCCCCChhhHHHHHHHHHHcC-Cchhhhhcc--CCCCCHHHHHHHHHHHHHhH
Q 046570           63 QHRPFTPAEDSIIIQAHAVHG-NKWATIARS--LPGRTDNAIKNHWNSTLRRK  112 (255)
Q Consensus        63 ~k~~WT~eED~~Ll~~v~~~G-~~W~~IA~~--~pgRT~~qcknRw~~llr~k  112 (255)
                      ++.+||++||++|+++|.+|| ++|..||..  |++||+.||++||+++++..
T Consensus         1 Kr~~WT~eEd~~L~~~V~~~G~~~W~~I~~~~~~~~Rt~~q~k~Rwrn~~k~~   53 (55)
T d1w0ua_           1 KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLG   53 (55)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTT
T ss_pred             CCCCCCHHHHHHHHHHHHHhCCChHHHHHhhcCCCCcCHHHHHHHHHHHhcCC
Confidence            467999999999999999999 589999997  56999999999999988754

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=4.3e-14  Score=99.33  Aligned_cols=50  Identities=22%  Similarity=0.307  Sum_probs=46.8

Q ss_pred             CCCChhhHHHHHHHHHHcCCchhhhhccCCCCCHHHHHHHHHHHHHhHHH
Q 046570           65 RPFTPAEDSIIIQAHAVHGNKWATIARSLPGRTDNAIKNHWNSTLRRKRM  114 (255)
Q Consensus        65 ~~WT~eED~~Ll~~v~~~G~~W~~IA~~~pgRT~~qcknRw~~llr~k~~  114 (255)
                      ..||++||.+|++++..||.+|..||.+||+||+.||++||..++++...
T Consensus         3 ~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~ry~~~~~~~~k   52 (65)
T d2cu7a1           3 VKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVK   52 (65)
T ss_dssp             CCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHSC
T ss_pred             CCCCHHHHHHHHHHHHHhcchHHHHHHHcCCCCHHHHHHHHHHHHHHHHh
Confidence            57999999999999999999999999999999999999999998887643

>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.43  E-value=4.6e-14  Score=104.94  Aligned_cols=62  Identities=18%  Similarity=0.324  Sum_probs=52.2

Q ss_pred             CCCCChhhHHHHHHHHHHcCCc------hhhhhccCCCCCHHHHHHHHHHHHHhHHHhhhhcCCcCCCcc
Q 046570           64 HRPFTPAEDSIIIQAHAVHGNK------WATIARSLPGRTDNAIKNHWNSTLRRKRMAELSSASSESNSV  127 (255)
Q Consensus        64 k~~WT~eED~~Ll~~v~~~G~~------W~~IA~~~pgRT~~qcknRw~~llr~k~~~~~~~~~~~~~~~  127 (255)
                      ++.||++||++|+++|.+||.+      |..||.+|||||+.||++||+.+|.+.+..  ..++.+....
T Consensus         1 k~~WT~eED~~L~~~v~~~g~~~~~~~~W~~IA~~lpgRt~~qcr~Rw~~~L~p~l~~--~~~t~~ed~l   68 (86)
T d1igna1           1 KASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLEY--VYEVDKFGKL   68 (86)
T ss_dssp             CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCCC--EECBCTTSCB
T ss_pred             CCCCCHHHHHHHHHHHHHhCcCcCCccCHHHHHHHcCCCCHHHHHHHHHHHcCccccC--CCCCCchhHH
Confidence            5789999999999999999975      999999999999999999999999988643  3344444333

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=4.3e-14  Score=98.11  Aligned_cols=53  Identities=17%  Similarity=0.368  Sum_probs=47.9

Q ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHHhCCC---ChhhhccCCCCCCcccccccccc
Q 046570            4 NSNNNDRIKGSWSPQEDATLIKLVEQHGPR---NWSMISSGIPGRSGKSCRLRWCN   56 (255)
Q Consensus         4 n~l~~~~~kg~WT~eED~~L~~lv~~~G~~---~W~~IA~~lpgRt~~qCr~Rw~~   56 (255)
                      ....+...+++||++||.+|+.+|..||..   +|..||.+|||||+.||+.||+.
T Consensus         4 ~~~~~~~~~~~WT~eEd~~L~~~v~~~~~~~~~~W~~IA~~l~~Rt~~qc~~R~~~   59 (60)
T d2cqra1           4 RKERARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKL   59 (60)
T ss_dssp             CCCTTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHH
T ss_pred             ccccCCcCCCCcCHHHHHHHHHHHHHcCCccchHHHHHHHHcCCCCHHHHHHHHHH
Confidence            445678889999999999999999999965   49999999999999999999964

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=1.2e-13  Score=91.47  Aligned_cols=43  Identities=19%  Similarity=0.416  Sum_probs=40.8

Q ss_pred             CCChhhHHHHHHHHHHcC-CchhhhhccCCCCCHHHHHHHHHHH
Q 046570           66 PFTPAEDSIIIQAHAVHG-NKWATIARSLPGRTDNAIKNHWNST  108 (255)
Q Consensus        66 ~WT~eED~~Ll~~v~~~G-~~W~~IA~~~pgRT~~qcknRw~~l  108 (255)
                      .||++||.+|+++|.+|| ++|..||.+|++||+.||+.||.++
T Consensus         3 ~Wt~eEd~~L~~~v~~~G~~nW~~Ia~~~~~Rt~~Qcr~r~~~~   46 (47)
T d1x41a1           3 SWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKY   46 (47)
T ss_dssp             SSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHCCccHHHHHHHcCCCCHHHHHHHHHHh
Confidence            599999999999999999 5799999999999999999999875

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=1.5e-14  Score=101.76  Aligned_cols=59  Identities=17%  Similarity=0.197  Sum_probs=52.2

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCChhhhccCCCCCCcccccccccccCCCCccCCCCChhh
Q 046570           12 KGSWSPQEDATLIKLVEQHGPRNWSMISSGIPGRSGKSCRLRWCNQLSPTVQHRPFTPAE   71 (255)
Q Consensus        12 kg~WT~eED~~L~~lv~~~G~~~W~~IA~~lpgRt~~qCr~Rw~~~L~p~l~k~~WT~eE   71 (255)
                      ..+||++||.+|+.+|..|| .+|..||.+||+||+.||+.||.+++.+..+.+.+...+
T Consensus         2 ~~~WT~eEd~~l~~~~~~~G-~~W~~Ia~~~~~Rt~~q~k~ry~~~~~~~~k~~~~~~~~   60 (65)
T d2cu7a1           2 SVKWTIEEKELFEQGLAKFG-RRWTKISKLIGSRTVLQVKSYARQYFKNKVKCGLDKETP   60 (65)
T ss_dssp             CCCCCHHHHHHHHHHHHHTC-SCHHHHHHHHSSSCHHHHHHHHHHHHHHHSCSCTTCCCS
T ss_pred             CCCCCHHHHHHHHHHHHHhc-chHHHHHHHcCCCCHHHHHHHHHHHHHHHHhcCCCCCCc
Confidence            46899999999999999999 689999999999999999999999988777766665543

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=3.7e-13  Score=93.23  Aligned_cols=50  Identities=16%  Similarity=0.322  Sum_probs=45.3

Q ss_pred             CCCccCCCCChhhHHHHHHHHHHcCC----chhhhhccCCCCCHHHHHHHHHHH
Q 046570           59 SPTVQHRPFTPAEDSIIIQAHAVHGN----KWATIARSLPGRTDNAIKNHWNST  108 (255)
Q Consensus        59 ~p~l~k~~WT~eED~~Ll~~v~~~G~----~W~~IA~~~pgRT~~qcknRw~~l  108 (255)
                      .+...+.+||++||.+|++++..||.    +|..||..|||||+.||+.||..|
T Consensus         7 ~~~~~~~~WT~eEd~~L~~~v~~~~~~~~~~W~~IA~~l~~Rt~~qc~~R~~~L   60 (60)
T d2cqra1           7 RARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLL   60 (60)
T ss_dssp             TTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHH
T ss_pred             cCCcCCCCcCHHHHHHHHHHHHHcCCccchHHHHHHHHcCCCCHHHHHHHHHHC
Confidence            45567789999999999999999995    599999999999999999999764

>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: 2610100b20rik gene product
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.35  E-value=8.7e-13  Score=99.04  Aligned_cols=76  Identities=13%  Similarity=0.204  Sum_probs=68.5

Q ss_pred             ccCCCCCCcccccccccccCCCCccCCCCChhhHHHHHHHHHHcCCc---hhhhhccCCCCCHHHHHHHHHHHHHhHHH
Q 046570           39 SSGIPGRSGKSCRLRWCNQLSPTVQHRPFTPAEDSIIIQAHAVHGNK---WATIARSLPGRTDNAIKNHWNSTLRRKRM  114 (255)
Q Consensus        39 A~~lpgRt~~qCr~Rw~~~L~p~l~k~~WT~eED~~Ll~~v~~~G~~---W~~IA~~~pgRT~~qcknRw~~llr~k~~  114 (255)
                      |..+|..+..++..++.+..++......||.|||+.||+.++++|.+   |..||..|+||+++||++||+.+++..-.
T Consensus         8 a~~~p~~t~~~v~A~n~~~~s~G~~~~~WTrEEDriIL~~~q~~G~~~~tw~~Ia~~L~~Rs~~qvr~Rf~~Lm~lf~~   86 (95)
T d1ug2a_           8 AGALPKASEATVCANNSKVSSTGEKVVLWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQLFHT   86 (95)
T ss_dssp             CCCCCCCCCCCCCCCCCCCCCCCCCCSSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHHHHHH
T ss_pred             cccCCCCCccccccccCccCCCCCccCCcCHHHHHHHHHHHHHcCCcHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence            45678888889999998888888888899999999999999999987   99999999999999999999999887643

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

Probab=99.32  E-value=1.2e-12  Score=91.50  Aligned_cols=49  Identities=31%  Similarity=0.620  Sum_probs=44.1

Q ss_pred             CCCChhhHHHHHHHHHHcCC----chhhhhccCCCCCHHHHHHHHHHHHHhHH
Q 046570           65 RPFTPAEDSIIIQAHAVHGN----KWATIARSLPGRTDNAIKNHWNSTLRRKR  113 (255)
Q Consensus        65 ~~WT~eED~~Ll~~v~~~G~----~W~~IA~~~pgRT~~qcknRw~~llr~k~  113 (255)
                      .+||++||.+|+++++.||.    +|.+||.+|||||+.||++||+.++..-.
T Consensus         2 ~~WT~eEd~~L~~~v~~~~~~~~~~W~~Ia~~l~gRt~~qc~~r~~~L~~dik   54 (63)
T d2cjja1           2 RPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIK   54 (63)
T ss_dssp             CSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHCCCCchHHHHHHHHcCCCCHHHHHHHHHHHHHHhh
Confidence            48999999999999999995    49999999999999999999988766543

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

Probab=99.28  E-value=3.5e-13  Score=94.33  Aligned_cols=44  Identities=14%  Similarity=0.414  Sum_probs=40.8

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCC---hhhhccCCCCCCcccccccccc
Q 046570           13 GSWSPQEDATLIKLVEQHGPRN---WSMISSGIPGRSGKSCRLRWCN   56 (255)
Q Consensus        13 g~WT~eED~~L~~lv~~~G~~~---W~~IA~~lpgRt~~qCr~Rw~~   56 (255)
                      .+||++||.+|+.+|..||.++   |..||.+|||||+.||+.||..
T Consensus         2 ~~WT~eEd~~L~~~v~~~~~~~~~~W~~Ia~~l~gRt~~qc~~r~~~   48 (63)
T d2cjja1           2 RPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEI   48 (63)
T ss_dssp             CSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHCCCCchHHHHHHHHcCCCCHHHHHHHHHH
Confidence            5799999999999999999754   9999999999999999999954

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=8.2e-12  Score=88.34  Aligned_cols=48  Identities=15%  Similarity=0.065  Sum_probs=43.9

Q ss_pred             ccCCCCChhhHHHHHHHHHHcCCchhhhhccCCCCCHHHHHHHHHHHH
Q 046570           62 VQHRPFTPAEDSIIIQAHAVHGNKWATIARSLPGRTDNAIKNHWNSTL  109 (255)
Q Consensus        62 l~k~~WT~eED~~Ll~~v~~~G~~W~~IA~~~pgRT~~qcknRw~~ll  109 (255)
                      ....+||++|+.+|++++.+||.+|..||..|||||..||++||....
T Consensus        15 ~~~~~WT~eE~~~f~~~~~~~G~~w~~Ia~~~~~rt~~q~~~~yy~~k   62 (68)
T d1xc5a1          15 QVMNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYLTK   62 (68)
T ss_dssp             TTTTCCCTTTHHHHHHHHHHTTSCSSSHHHHTTTSCHHHHHHHHHHHT
T ss_pred             cCCCCCCHHHHHHHHHHHHHHCCcHHHHHHHcCCCCHHHHHHHHHHHH
Confidence            344689999999999999999999999999999999999999997643

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=5.4e-12  Score=88.47  Aligned_cols=48  Identities=21%  Similarity=0.315  Sum_probs=45.0

Q ss_pred             CCCCChhhHHHHHHHHHHcCCchhhhhccCCCCCHHHHHHHHHHHHHh
Q 046570           64 HRPFTPAEDSIIIQAHAVHGNKWATIARSLPGRTDNAIKNHWNSTLRR  111 (255)
Q Consensus        64 k~~WT~eED~~Ll~~v~~~G~~W~~IA~~~pgRT~~qcknRw~~llr~  111 (255)
                      ...||++|+.+|+.++..||.+|..||.+|||||..+|++||..+.++
T Consensus         5 ~~~WT~eE~~~f~~~~~~~G~~w~~Ia~~~~~kt~~q~~~~y~~~~k~   52 (65)
T d2iw5b1           5 NARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRR   52 (65)
T ss_dssp             CSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHTTTT
T ss_pred             CCCCCHHHHHHHHHHHHHhCchHHHHHHHcCCCCHHHHHHHHHHHHhh
Confidence            467999999999999999999999999999999999999999987654

>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Telomere binding protein TBP1
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=99.19  E-value=1.5e-11  Score=90.45  Aligned_cols=50  Identities=24%  Similarity=0.511  Sum_probs=44.9

Q ss_pred             CCCChhhHHHHHHHHHHcCC-chhhhhcc----CCCCCHHHHHHHHHHHHHhHHH
Q 046570           65 RPFTPAEDSIIIQAHAVHGN-KWATIARS----LPGRTDNAIKNHWNSTLRRKRM  114 (255)
Q Consensus        65 ~~WT~eED~~Ll~~v~~~G~-~W~~IA~~----~pgRT~~qcknRw~~llr~k~~  114 (255)
                      .+||++||+.|+.+|.+||. +|..|+..    +++||+.||+.||+++++....
T Consensus         1 r~WT~eEd~~L~~~V~~~G~~~W~~I~~~~~~~~~~Rt~~qck~RWrn~l~~~~~   55 (83)
T d2ckxa1           1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASI   55 (83)
T ss_dssp             CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHHS
T ss_pred             CCCCHHHHHHHHHHHHHHCcccHHHHHHHHHhhccCCCHHHHHHHHHHHhhhhcc
Confidence            38999999999999999995 89999975    6899999999999999987643

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.09  E-value=1.1e-11  Score=86.89  Aligned_cols=49  Identities=18%  Similarity=0.341  Sum_probs=44.5

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCChhhhccCCCCCCcccccccccccCC
Q 046570           10 RIKGSWSPQEDATLIKLVEQHGPRNWSMISSGIPGRSGKSCRLRWCNQLS   59 (255)
Q Consensus        10 ~~kg~WT~eED~~L~~lv~~~G~~~W~~IA~~lpgRt~~qCr~Rw~~~L~   59 (255)
                      ....+||++|+.+|..++..|| .+|..||.+|||||+.||+.+|.++.+
T Consensus         3 k~~~~WT~eE~~~f~~~~~~~G-~~w~~Ia~~~~~kt~~q~~~~y~~~~k   51 (65)
T d2iw5b1           3 KCNARWTTEEQLLAVQAIRKYG-RDFQAISDVIGNKSVVQVKNFFVNYRR   51 (65)
T ss_dssp             CCCSSCCHHHHHHHHHHHHHHS-SCHHHHHHHHSSCCHHHHHHHHHHTTT
T ss_pred             CCCCCCCHHHHHHHHHHHHHhC-chHHHHHHHcCCCCHHHHHHHHHHHHh
Confidence            3567899999999999999999 679999999999999999999987653

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.05  E-value=1.4e-11  Score=87.10  Aligned_cols=49  Identities=24%  Similarity=0.429  Sum_probs=44.2

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCCCChhhhccCCCCCCccccccccccc
Q 046570            8 NDRIKGSWSPQEDATLIKLVEQHGPRNWSMISSGIPGRSGKSCRLRWCNQ   57 (255)
Q Consensus         8 ~~~~kg~WT~eED~~L~~lv~~~G~~~W~~IA~~lpgRt~~qCr~Rw~~~   57 (255)
                      ......+||++|+.+|+.++..|| .+|..||.+||+||..||+.+|...
T Consensus        13 ~~~~~~~WT~eE~~~f~~~~~~~G-~~w~~Ia~~~~~rt~~q~~~~yy~~   61 (68)
T d1xc5a1          13 DRQVMNMWSEQEKETFREKFMQHP-KNFGLIASFLERKTVAECVLYYYLT   61 (68)
T ss_dssp             STTTTTCCCTTTHHHHHHHHHHTT-SCSSSHHHHTTTSCHHHHHHHHHHH
T ss_pred             cccCCCCCCHHHHHHHHHHHHHHC-CcHHHHHHHcCCCCHHHHHHHHHHH
Confidence            345567899999999999999999 5899999999999999999999754

>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: 2610100b20rik gene product
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.87  E-value=3.2e-10  Score=84.80  Aligned_cols=56  Identities=16%  Similarity=0.355  Sum_probs=48.3

Q ss_pred             CCCCCCCCCCCCCCCHHHHHHHHHHHHHhCCCC--hhhhccCCCCCCccccccccccc
Q 046570            2 NSNSNNNDRIKGSWSPQEDATLIKLVEQHGPRN--WSMISSGIPGRSGKSCRLRWCNQ   57 (255)
Q Consensus         2 ~sn~l~~~~~kg~WT~eED~~L~~lv~~~G~~~--W~~IA~~lpgRt~~qCr~Rw~~~   57 (255)
                      |++...+..+...||.|||+.|+..+.++|+..  |..||..|+||++.||+.||..+
T Consensus        23 n~~~~s~G~~~~~WTrEEDriIL~~~q~~G~~~~tw~~Ia~~L~~Rs~~qvr~Rf~~L   80 (95)
T d1ug2a_          23 NSKVSSTGEKVVLWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFREL   80 (95)
T ss_dssp             CCCCCCCCCCCSSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHH
T ss_pred             cCccCCCCCccCCcCHHHHHHHHHHHHHcCCcHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence            444555677888999999999999999999643  99999999999999999999753

>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Metastasis associated protein MTA3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.29  E-value=5.3e-07  Score=61.04  Aligned_cols=44  Identities=16%  Similarity=0.256  Sum_probs=40.3

Q ss_pred             CCCChhhHHHHHHHHHHcCCchhhhhcc-CCCCCHHHHHHHHHHH
Q 046570           65 RPFTPAEDSIIIQAHAVHGNKWATIARS-LPGRTDNAIKNHWNST  108 (255)
Q Consensus        65 ~~WT~eED~~Ll~~v~~~G~~W~~IA~~-~pgRT~~qcknRw~~l  108 (255)
                      ..||++|..++.+++..||.+|..|++. +|+||..+|.+.|...
T Consensus         2 d~WT~eE~~~F~~~~~~yGKdf~~I~~~~v~~Ks~~~~v~fYY~~   46 (57)
T d2crga1           2 EEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYYMW   46 (57)
T ss_dssp             CCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHcccHHHHHHHHcCCCCHHHHHHHHHHH
Confidence            3699999999999999999999999985 6999999999999753

>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.13  E-value=1.1e-06  Score=60.02  Aligned_cols=43  Identities=19%  Similarity=0.331  Sum_probs=39.4

Q ss_pred             CCCChhhHHHHHHHHHHcC----CchhhhhccCCCCCHHHHHHHHHHH
Q 046570           65 RPFTPAEDSIIIQAHAVHG----NKWATIARSLPGRTDNAIKNHWNST  108 (255)
Q Consensus        65 ~~WT~eED~~Ll~~v~~~G----~~W~~IA~~~pgRT~~qcknRw~~l  108 (255)
                      ..||.+|+.+|.+++.+|.    .+|.+||..+ |||..+|..||+.+
T Consensus         2 ~eWT~ee~~~le~Al~~~P~gt~~RW~~IA~~v-gkt~~ev~~~~k~l   48 (59)
T d2cqqa1           2 PEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQL   48 (59)
T ss_dssp             CCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHH-CCCHHHHHHHHHHH
Confidence            4799999999999999997    4699999999 99999999999655

>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Metastasis associated protein MTA3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.09  E-value=7.2e-07  Score=60.35  Aligned_cols=42  Identities=21%  Similarity=0.344  Sum_probs=38.6

Q ss_pred             CCCHHHHHHHHHHHHHhCCCChhhhccC-CCCCCcccccccccc
Q 046570           14 SWSPQEDATLIKLVEQHGPRNWSMISSG-IPGRSGKSCRLRWCN   56 (255)
Q Consensus        14 ~WT~eED~~L~~lv~~~G~~~W~~IA~~-lpgRt~~qCr~Rw~~   56 (255)
                      .||++|-.++.+++..|| .+|..|++. +|+||..||...|..
T Consensus         3 ~WT~eE~~~F~~~~~~yG-Kdf~~I~~~~v~~Ks~~~~v~fYY~   45 (57)
T d2crga1           3 EWSASEACLFEEALEKYG-KDFNDIRQDFLPWKSLTSIIEYYYM   45 (57)
T ss_dssp             CCCHHHHHHHHHHHHHTC-SCHHHHHHTTCSSSCHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHc-ccHHHHHHHHcCCCCHHHHHHHHHH
Confidence            699999999999999999 689999975 699999999998864

>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.04  E-value=4.6e-07  Score=61.91  Aligned_cols=44  Identities=16%  Similarity=0.313  Sum_probs=39.4

Q ss_pred             CCCCHHHHHHHHHHHHHhCCC---ChhhhccCCCCCCccccccccccc
Q 046570           13 GSWSPQEDATLIKLVEQHGPR---NWSMISSGIPGRSGKSCRLRWCNQ   57 (255)
Q Consensus        13 g~WT~eED~~L~~lv~~~G~~---~W~~IA~~lpgRt~~qCr~Rw~~~   57 (255)
                      +.||.+|+.+|.+++.+|..+   .|..||..| |||..+|..||..+
T Consensus         2 ~eWT~ee~~~le~Al~~~P~gt~~RW~~IA~~v-gkt~~ev~~~~k~l   48 (59)
T d2cqqa1           2 PEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQL   48 (59)
T ss_dssp             CCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHH-CCCHHHHHHHHHHH
Confidence            579999999999999999643   599999999 89999999999753

>d1x58a1 a.4.1.1 (A:8-56) Hypothetical protein 4930532d21rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Hypothetical protein 4930532d21rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.60  E-value=6.4e-05  Score=47.78  Aligned_cols=46  Identities=24%  Similarity=0.528  Sum_probs=40.7

Q ss_pred             CCCCChhhHHHHHHHHHHcCCchhhhhccCC---CCCHHHHHHHHHHHH
Q 046570           64 HRPFTPAEDSIIIQAHAVHGNKWATIARSLP---GRTDNAIKNHWNSTL  109 (255)
Q Consensus        64 k~~WT~eED~~Ll~~v~~~G~~W~~IA~~~p---gRT~~qcknRw~~ll  109 (255)
                      +..||.+|-.-|+..|+.+|+.|..|-=.+|   ||+...+..+|+.++
T Consensus         1 Rknft~eEv~YL~~GVK~~G~~WNsILWs~PF~~GR~~vdLA~Ky~~l~   49 (49)
T d1x58a1           1 RKDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYHRLI   49 (49)
T ss_dssp             SSSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHhcchhhhhhhccCCCCCchhhHHHHHHHhhC
Confidence            3579999999999999999999999976554   999999999998764

>d1fexa_ a.4.1.3 (A:) Rap1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Rap1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.41  E-value=9.2e-05  Score=50.09  Aligned_cols=47  Identities=26%  Similarity=0.446  Sum_probs=40.6

Q ss_pred             CCCCChhhHHHHHHHHHHcC--------Cc-hhhhhc-cCCCCCHHHHHHHHHHHHH
Q 046570           64 HRPFTPAEDSIIIQAHAVHG--------NK-WATIAR-SLPGRTDNAIKNHWNSTLR  110 (255)
Q Consensus        64 k~~WT~eED~~Ll~~v~~~G--------~~-W~~IA~-~~pgRT~~qcknRw~~llr  110 (255)
                      +.+||.+||+.|+..|+.+.        +. |..++. .+|.+|-.+.|+||.+.|+
T Consensus         2 R~~fT~eeD~~l~~yv~~~~~~~~~~~Gn~iwk~l~~~~~~~HtwQSwrdRY~K~L~   58 (59)
T d1fexa_           2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR   58 (59)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHhccCcCCccHHHHHHHHHHhcCCCCCHHHHHHHHHHHhc
Confidence            46899999999999998863        22 999985 6899999999999988775

>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: GARP response regulators
domain: Arr10-B
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.11  E-value=0.00051  Score=47.03  Aligned_cols=47  Identities=13%  Similarity=0.041  Sum_probs=39.7

Q ss_pred             CCCCChhhHHHHHHHHHHcCCch---hhhhcc--CCCCCHHHHHHHHHHHHH
Q 046570           64 HRPFTPAEDSIIIQAHAVHGNKW---ATIARS--LPGRTDNAIKNHWNSTLR  110 (255)
Q Consensus        64 k~~WT~eED~~Ll~~v~~~G~~W---~~IA~~--~pgRT~~qcknRw~~llr  110 (255)
                      +-.||+|++..++.++..||..|   ..|...  ++++|..+|+.|.+++.-
T Consensus         7 R~~WT~elH~~Fv~Av~~lG~~~atpk~I~~~m~v~~lT~~qV~SHlQKYrl   58 (64)
T d1irza_           7 RVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFRV   58 (64)
T ss_dssp             SCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHhCccccchHHHHHHcCCCCCCHHHHHHHHHHHHH
Confidence            45799999999999999999887   466665  579999999999877643

>d1fexa_ a.4.1.3 (A:) Rap1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Rap1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.84  E-value=0.00037  Score=47.03  Aligned_cols=48  Identities=15%  Similarity=0.367  Sum_probs=40.6

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCC--------Chhhhcc-CCCCCCcccccccccccCC
Q 046570           12 KGSWSPQEDATLIKLVEQHGPR--------NWSMISS-GIPGRSGKSCRLRWCNQLS   59 (255)
Q Consensus        12 kg~WT~eED~~L~~lv~~~G~~--------~W~~IA~-~lpgRt~~qCr~Rw~~~L~   59 (255)
                      +-+||.+||..|+..|+.+...        -|..++. .+|.+|-++-++||...|.
T Consensus         2 R~~fT~eeD~~l~~yv~~~~~~~~~~~Gn~iwk~l~~~~~~~HtwQSwrdRY~K~L~   58 (59)
T d1fexa_           2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR   58 (59)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHhccCcCCccHHHHHHHHHHhcCCCCCHHHHHHHHHHHhc
Confidence            4689999999999999988422        2999984 6899999999999988764

>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: GARP response regulators
domain: Arr10-B
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.56  E-value=0.00043  Score=47.42  Aligned_cols=50  Identities=8%  Similarity=0.097  Sum_probs=39.0

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCCCCh--hhhccC--CCCCCccccccccccc
Q 046570            8 NDRIKGSWSPQEDATLIKLVEQHGPRNW--SMISSG--IPGRSGKSCRLRWCNQ   57 (255)
Q Consensus         8 ~~~~kg~WT~eED~~L~~lv~~~G~~~W--~~IA~~--lpgRt~~qCr~Rw~~~   57 (255)
                      +.+.+-.||+|+-.+++.+|..+|...|  ..|...  ++++|..||+-|.+.|
T Consensus         3 ~kk~R~~WT~elH~~Fv~Av~~lG~~~atpk~I~~~m~v~~lT~~qV~SHlQKY   56 (64)
T d1irza_           3 QKKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKF   56 (64)
T ss_dssp             CCCSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHH
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCccccchHHHHHHcCCCCCCHHHHHHHHHHH
Confidence            3556778999999999999999996544  456544  5899999998776543

>d1wgxa_ a.4.1.3 (A:) Hypothetical protein C14orf106 (KIAA1903) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Hypothetical protein C14orf106 (KIAA1903)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.27  E-value=0.0024  Score=44.00  Aligned_cols=53  Identities=17%  Similarity=0.335  Sum_probs=44.3

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHh---CCCChhhhccCCCCCCcccccccccccCCC
Q 046570            8 NDRIKGSWSPQEDATLIKLVEQH---GPRNWSMISSGIPGRSGKSCRLRWCNQLSP   60 (255)
Q Consensus         8 ~~~~kg~WT~eED~~L~~lv~~~---G~~~W~~IA~~lpgRt~~qCr~Rw~~~L~p   60 (255)
                      ....-+.|+++|-.+|-.++...   .++-|..||..+..|++..|...|...+..
T Consensus         4 g~t~d~~W~e~ELqkLh~A~~SlPkh~~gfW~~VA~~VGtRSaeECQ~ky~~~~~~   59 (73)
T d1wgxa_           4 GSSGDKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENPRG   59 (73)
T ss_dssp             CCCSSSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSSSS
T ss_pred             CcCcccccCHHHHHHHHHHHHhcCCCCCccHHHHHHHHccCCHHHHHHHHHhCccc
Confidence            34556799999999999999865   444699999999999999999999876553

>d1x58a1 a.4.1.1 (A:8-56) Hypothetical protein 4930532d21rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Hypothetical protein 4930532d21rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.89  E-value=0.0051  Score=38.75  Aligned_cols=44  Identities=18%  Similarity=0.340  Sum_probs=36.4

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCChhhhccCC---CCCCcccccccccc
Q 046570           12 KGSWSPQEDATLIKLVEQHGPRNWSMISSGI---PGRSGKSCRLRWCN   56 (255)
Q Consensus        12 kg~WT~eED~~L~~lv~~~G~~~W~~IA~~l---pgRt~~qCr~Rw~~   56 (255)
                      +.-||.+|-.-|...|+++| ..|..|-=.+   |||++......|..
T Consensus         1 Rknft~eEv~YL~~GVK~~G-~~WNsILWs~PF~~GR~~vdLA~Ky~~   47 (49)
T d1x58a1           1 RKDFTKEEVNYLFHGVKTMG-NHWNSILWSFPFQKGRRAVDLAHKYHR   47 (49)
T ss_dssp             SSSCCHHHHHHHHHHHHHHC-SCHHHHHHHSCCCTTCCHHHHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHhc-chhhhhhhccCCCCCchhhHHHHHHHh
Confidence            34699999999999999999 7899995433   79999888777653

>d1wgxa_ a.4.1.3 (A:) Hypothetical protein C14orf106 (KIAA1903) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Hypothetical protein C14orf106 (KIAA1903)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.31  E-value=0.059  Score=36.82  Aligned_cols=48  Identities=15%  Similarity=0.230  Sum_probs=41.4

Q ss_pred             CCCCChhhHHHHHHHHHHcCC----chhhhhccCCCCCHHHHHHHHHHHHHh
Q 046570           64 HRPFTPAEDSIIIQAHAVHGN----KWATIARSLPGRTDNAIKNHWNSTLRR  111 (255)
Q Consensus        64 k~~WT~eED~~Ll~~v~~~G~----~W~~IA~~~pgRT~~qcknRw~~llr~  111 (255)
                      -+.|+++|-++|-.++..+..    -|..+|..++.||...|..+|..-.+.
T Consensus         8 d~~W~e~ELqkLh~A~~SlPkh~~gfW~~VA~~VGtRSaeECQ~ky~~~~~~   59 (73)
T d1wgxa_           8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENPRG   59 (73)
T ss_dssp             SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSSSS
T ss_pred             ccccCHHHHHHHHHHHHhcCCCCCccHHHHHHHHccCCHHHHHHHHHhCccc
Confidence            468999999999999988774    399999999999999999999765443

>d1ofcx1 a.4.1.3 (X:799-850) SANT domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: SANT domain of the nucleosome remodeling ATPase ISWI
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=90.16  E-value=0.15  Score=32.89  Aligned_cols=39  Identities=18%  Similarity=0.358  Sum_probs=35.4

Q ss_pred             CCCHHHHHHHHHHHHHhCCCChhhhccCCCCCCcccccc
Q 046570           14 SWSPQEDATLIKLVEQHGPRNWSMISSGIPGRSGKSCRL   52 (255)
Q Consensus        14 ~WT~eED~~L~~lv~~~G~~~W~~IA~~lpgRt~~qCr~   52 (255)
                      .|+.-+=..++.+..+||-.+-..||..|.|+|...++.
T Consensus         1 ~WnrrdF~~Fi~a~ekyGR~d~~~Ia~e~~~Kt~eEV~~   39 (52)
T d1ofcx1           1 AWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIE   39 (52)
T ss_dssp             TCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHhhHHHHHHHhcCCCHHHHHH
Confidence            499999999999999999889999999999999887654

>d1ofcx1 a.4.1.3 (X:799-850) SANT domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: SANT domain of the nucleosome remodeling ATPase ISWI
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=88.78  E-value=0.63  Score=29.77  Aligned_cols=45  Identities=18%  Similarity=0.235  Sum_probs=38.5

Q ss_pred             CCChhhHHHHHHHHHHcC-CchhhhhccCCCCCHHHHHHHHHHHHH
Q 046570           66 PFTPAEDSIIIQAHAVHG-NKWATIARSLPGRTDNAIKNHWNSTLR  110 (255)
Q Consensus        66 ~WT~eED~~Ll~~v~~~G-~~W~~IA~~~pgRT~~qcknRw~~llr  110 (255)
                      .|+.-+=..++.+..+|| .+-..||..|.|+|...|+.......+
T Consensus         1 ~WnrrdF~~Fi~a~ekyGR~d~~~Ia~e~~~Kt~eEV~~Y~~vFw~   46 (52)
T d1ofcx1           1 AWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNAVFWE   46 (52)
T ss_dssp             TCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHhhHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence            488999999999999999 479999999999999999876654433

>d1ofcx2 a.4.1.13 (X:851-978) SLIDE domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: SLIDE domain
domain: SLIDE domain of the nucleosome remodeling ATPase ISWI
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=87.57  E-value=0.33  Score=36.75  Aligned_cols=53  Identities=15%  Similarity=0.274  Sum_probs=42.0

Q ss_pred             CccCCCCChhhHHHHHHHHHHcC-Cc---hhhhhc------c------CCCCCHHHHHHHHHHHHHhHH
Q 046570           61 TVQHRPFTPAEDSIIIQAHAVHG-NK---WATIAR------S------LPGRTDNAIKNHWNSTLRRKR  113 (255)
Q Consensus        61 ~l~k~~WT~eED~~Ll~~v~~~G-~~---W~~IA~------~------~pgRT~~qcknRw~~llr~k~  113 (255)
                      ..++..+|.+||.-|+-++.+|| .+   |..|-.      .      |..||+..|..|...+++--.
T Consensus        46 ~nk~k~yteeEDRfLl~~~~~~G~~~~~~~e~ir~~Ir~~p~FrFDwf~kSRt~~el~rR~~tLi~~i~  114 (128)
T d1ofcx2          46 NNKGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRCNTLITLIE  114 (128)
T ss_dssp             TCCCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred             ccCCCccCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHhCcchhhhhHhccCCHHHHHHHHHHHHHHHH
Confidence            34455799999999999999999 44   888732      2      247999999999999987643

>d1ofcx2 a.4.1.13 (X:851-978) SLIDE domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: SLIDE domain
domain: SLIDE domain of the nucleosome remodeling ATPase ISWI
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=81.28  E-value=0.21  Score=37.86  Aligned_cols=47  Identities=15%  Similarity=0.248  Sum_probs=36.2

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCCC---hhhhccCC------------CCCCccccccccc
Q 046570            9 DRIKGSWSPQEDATLIKLVEQHGPRN---WSMISSGI------------PGRSGKSCRLRWC   55 (255)
Q Consensus         9 ~~~kg~WT~eED~~L~~lv~~~G~~~---W~~IA~~l------------pgRt~~qCr~Rw~   55 (255)
                      ..++..+|.+||.-|+-++.+||-++   |..|-..|            ..||+..+..|..
T Consensus        46 ~nk~k~yteeEDRfLl~~~~~~G~~~~~~~e~ir~~Ir~~p~FrFDwf~kSRt~~el~rR~~  107 (128)
T d1ofcx2          46 NNKGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRCN  107 (128)
T ss_dssp             TCCCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHHH
T ss_pred             ccCCCccCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHhCcchhhhhHhccCCHHHHHHHHH
Confidence            34445699999999999999999988   88875433            3677777777753