Citrus Sinensis ID: 046587

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700---

MRHDAWDDILDSKIWDLPQQSGVLPVLRLSYHHLPSHLKRCFAYCAIFPKDYEFNEKELTFLWMAGGIIRQSRKNERLEDLGGKCFHDLVSRSIFPQTSSGSSKFVMHDLIHDLAELVSRETIFRLEEANLSSRRFERIRHASYTRGRYDGKNKFKVFNEIEHLRTFLPLHERRGYYIPRTVLSDLLPKFRRLRMLSLQGYCIGELPMSFEDLRLLRLLNLADTDIRSLPESTCTLLNLEILILRNCSRLIKLPPKMRNLINLRHLDIRGAKLLKEMPFGMKELKNLQTLSNFIVGKGETASGLEDLKCLNFLCDELCMSGLENVNNPQNAREATVCEKHNLEALTLDWGSQFDNSRDGVVEEHVLEILQPHKCIKKVAIRNYGGARFPHWIGDPSFSKMKVLKLENCHNCVSLPSLGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPSLEILKPSIAECPKLSGQLPELLPSLETLVVSKCKKLFIRAEWMLYIRDRDCLTFIARRRLPASLKRLEIENCEKLQRLFDDEEDASSSSPSPASSSSPVMLQHLSIENCPELTSLSSGVQFLEALEFLEIRDCPELESILDGLPNLKCLQSIYIWKCPSLVSFPERGLPNTISRVGIGECDKLEALPNDLHKINSLRYLSIQLCRNLVSFPEEGFPTSLTSLRIGDFKMYKTLVQWGLHRLTSLGRLYIVD

ccHHHHHHHHHHcccccccccccHHHHHccccccccccHHHHcccccccccccccHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHccccccccccccEEEEcHHHHHHHHHHHHccEEEEEccccccccccccEEEEEEEccccccccccccccccccEEEEEccccccccccHHHHHHHHcccccEEEEEccccccccccccccccccccEEEccccccccccccccccccccEEccccccccccccccccccccccEEEcccccccccccccccccccccccccEEEccccccccHHccccccccccEEEEccccccccccHHHHccccccccccEEEEEEccccccccccccHHHHHcccccccccccEEEEccccccccccccccccccccEEEEEccccccccccccccccccEEEEccccccEEEcccccccccccccccccccccccccccccccccccccccccEEEEccccccccccccccEEcccccccccccccccccccEEEEEccccccccccccccccccccccccccccccccEEEEEcccccccccccccccccccEEEEEcccccccccccccccccccEEEEEcccccEEEccccccccccEEEEEcccccccccccccccccccEEEEEccccccccccccccccccEEEEEccccccccccccccccccccEEEEEc

ccHHHHHHHHHccHcccccccccHHHHHEcHHccccHHHHHHHEEEEccccccccHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHccccccccEEEHHHHHHHHHHHHccccEEEEccccccccccccEEEEEEEccccccccccccHcccHccEEEEEccccccccccHHHHHHHHHHccccEEEEEEcccccccccccccccccEEEEccccccccccccccccccHcEEEEcccccHcccccccccccccEEEEEcccccHHcccccccccccccEEEEEEcccccccccHHHHccHHHccccEEEccccccccHHHHHHHcccccccccEEEEEcccccccccccccHHHHHHHccccccccEEEEEcccccccccccccccccccEEEEEcccccccccccccccccHcEEEEccccccEEccHHHcccccccccccccEEEEEccccccHccccccccccccEEEEcccccHcccccccccccccccEEccccccccccccccEccccccHcHccHHHHcccccccccccccccccccEEEEccccccccccccccccccccEEEEcccHHHHcccHHccccccccEEEEcccccccccccccccccccEEEEcccHcHHcccccccccccccEEEEcccccccccccccccccccEEEEcccHHHHHccHccccccccccEEEEcc

MRHDAWDDIldskiwdlpqqsgvlpvlrlsyhhlpshlkRCFAYCaifpkdyefneKELTFLWMaggiirqsrknerledlggkcfhdlvsrsifpqtssgsskfVMHDLIHDLAELVSRETIFRLEEANLSSRRFERIRHAsytrgrydgknkfKVFNEIEHLRTflplherrgyyiprtvlsdlLPKFRRLRMLSLQgycigelpmSFEDLRLLRLLNLadtdirslpestcTLLNLEILILRNCsrliklppkmrnlinlRHLDIRGAKLLKEMPFGMKELKNLQTLSNFIvgkgetasgledlkCLNFLCDELCMsglenvnnpqnareATVCEKHNLealtldwgsqfdnsrdgvvEEHVLEILQPHKCIKKVAIRnyggarfphwigdpsfskmkvlklenchncvslpslgllsSLKHLAVKGLKKLKSIEsevygegfsmpfpsleilkpsiaecpklsgqlpellpSLETLVVSKCKKLFIRAEWMLYIRDRDCLTFIARRRLPASLKRLEIENCEKLQRLfddeedasssspspasssspvmlqhlsiencpeltslssGVQFLEALEfleirdcpelesildglpnlkclqsiyiwkcpslvsfperglpntisrvgigecdklealpndlhkiNSLRYLSIQLCRNlvsfpeegfptsltslrigdfKMYKTLVQWGLHrltslgrlyivd

MRHDAWDDILDSKIWDLPQQSGVLPVLRLSYHHLPSHLKRCFAYCAIFPKDYEFNEKELTFLWMAGGIIRQSRKNERLEDLGGKCFHDLVSRSIFPQTSSGSSKFVMHDLIHDLAELVSRETIFRleeanlssrrferirhasytrgrydgknkfKVFNEIEHLRtflplherrgyyiprtvlsdllPKFRRLRMLSLQGYCIGELPMSFEDLRLLRLLNLADTDIRSLPESTCTLLNLEILILRNCSRLIKLPPKMRNLINLRHLDIRGAKLLKEMPFGMKELKNLQTLSNFIVGKGETASGLEDLKCLNFLCDELCMSGLENVNNPQNAREATVCEKHNLEALTLDWGSQFDNSRDGVVEEHVLEILQPHKCIKKVAIRNYGGARFPHWIGDPSFSKMKVLKLENCHNCVSLPSLGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPSLEILKPSIAECPKLSGQLPELLPSLETLVVSKCKKLFIRAEWMLYIRDRDCLTFIARRRlpaslkrleieNCEKLQRLFDDEEDASSSSPSPASSSSPVMLQHLSIENCPELTSLSSGVQFLEALEFLEIRDCPELESILDGLPNLKCLQSIYIWKCPSLVSFPERGLPNTISRVGIGECDKLEALPNDLHKINSLRYLSIQLCRNLVSFpeegfptsltslrigdFKMYKTLVQWGlhrltslgrlyivd

MRHDAWDDILDSKIWDLPQQSGVLPVLRLSYHHLPSHLKRCFAYCAIFPKDYEFNEKELTFLWMAGGIIRQSRKNERLEDLGGKCFHDLVSRSIFPQTSSGSSKFVMHDLIHDLAELVSRETIFRLEEANLSSRRFERIRHASYTRGRYDGKNKFKVFNEIEHLRTFLPLHERRGYYIPRTVLSDLLPKFRRLRMLSLQGYCIGELPMSFEDlrllrllnlADTDIRSLPESTCTLLNLEILILRNCSRLIKLPPKMRNLINLRHLDIRGAKLLKEMPFGMKELKNLQTLSNFIVGKGETASGLEDLKCLNFLCDELCMSGLENVNNPQNAREATVCEKHNLEALTLDWGSQFDNSRDGVVEEHVLEILQPHKCIKKVAIRNYGGARFPHWIGDPSFSKMKVLKLENCHNCVslpslgllsslkhlAVKGLKKLKSIESEVYGEGFSMPFPSLEILKPSIAECPKLSGQLPELLPSLETLVVSKCKKLFIRAEWMLYIRDRDCLTFIARRRLPASLKRLEIENCEKLQRLFDDEEDasssspspasssspVMLQHLSIENCPELTSLSSGVQFLEALEFLEIRDCPELESILDGLPNLKCLQSIYIWKCPSLVSFPERGLPNTISRVGIGECDKLEALPNDLHKINSLRYLSIQLCRNLVSFPEEGFPTSLTSLRIGDFKMYKTLVQWGLHRLTSLGRLYIVD

*****WDDILDSKIWDLPQQSGVLPVLRLSYHHLPSHLKRCFAYCAIFPKDYEFNEKELTFLWMAGGIIRQSRKNERLEDLGGKCFHDLVSRSIFPQT***SSKFVMHDLIHDLAELVSRETIFRLEEANLSSRRFERIRHASYTRGRYDGKNKFKVFNEIEHLRTFLPLHERRGYYIPRTVLSDLLPKFRRLRMLSLQGYCIGELPMSFEDLRLLRLLNLADTDIRSLPESTCTLLNLEILILRNCSRLIKLPPKMRNLINLRHLDIRGAKLLKEMPFGMKELKNLQTLSNFIVGKGETASGLEDLKCLNFLCDELCMSGLENVNNPQNAREATVCEKHNLEALTLDWGSQFDNSRDGVVEEHVLEILQPHKCIKKVAIRNYGGARFPHWIGDPSFSKMKVLKLENCHNCVSLPSLGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPSLEILKPSIAECPKLSGQLPELLPSLETLVVSKCKKLFIRAEWMLYIRDRDCLTFIARRRLPASLKRLEIENCEKL****************************LSIENCPELTSLSSGVQFLEALEFLEIRDCPELESILDGLPNLKCLQSIYIWKCPSLVSFPERGLPNTISRVGIGECDKLEALPNDLHKINSLRYLSIQLCRNLVSFPEEGFPTSLTSLRIGDFKMYKTLVQWGLHRLTSLGRLYIV*

MRHDAWDDILDSKIWDLPQQSGVLPVLRLSYHHLPSHLKRCFAYCAIFPKDYEFNEKELTFLWMAGGIIRQSRKNERLEDLGGKCFHDLVSRSIFPQTSSGSSKFVMHDLIHDLAELVSRETIFRLEEA****RRFERIRHASYTRGRYDGKNKFKVFNEIEHLRTFLPLHERRGYYIPRTVLSDLLPKFRRLRMLSLQGYCIGELPMSFEDLRLLRLLNLADTDIRSLPESTCTLLNLEILILRNCSRLIKLPPKMRNLINLRHLDIRGAKLLKEMPFGMKELKNLQTLSNFIVGKGETASGLEDLKCLNFLCDELCMSGLENVNNPQNAREATVCEKHNLEALTLDWGSQFD*****VVEEHVLEILQPHKCIKKVAIRNYGGARFPHWIGDPSFSKMKVLKLENCHNCVSLPSLGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPSLEILKPSIAECPKLSGQLPELLPSLETLVVSKCKKLFIRAEWMLYIRDRDCLTFIARRRLPASLKRLEIENCEKLQRLFDDEEDASSSSPSPASSSSPVMLQHLSIENCPELTSLSSGVQFLEALEFLEIRDCPELESILDGLPNLKCLQSIYIWKCPSLVSFPERGLPNTISRVGIGECDKLEALPNDLHKINSLRYLSIQLCRNLVSFPEEGFPTSLTSLRIGDFKMYKTLVQWGLHRLTSLGRLYIVD

MRHDAWDDILDSKIWDLPQQSGVLPVLRLSYHHLPSHLKRCFAYCAIFPKDYEFNEKELTFLWMAGGIIRQSRKNERLEDLGGKCFHDLVSRSIFPQTSSGSSKFVMHDLIHDLAELVSRETIFRLEEANLSSRRFERIRHASYTRGRYDGKNKFKVFNEIEHLRTFLPLHERRGYYIPRTVLSDLLPKFRRLRMLSLQGYCIGELPMSFEDLRLLRLLNLADTDIRSLPESTCTLLNLEILILRNCSRLIKLPPKMRNLINLRHLDIRGAKLLKEMPFGMKELKNLQTLSNFIVGKGETASGLEDLKCLNFLCDELCMSGLENVNNPQNAREATVCEKHNLEALTLDWGSQFDNSRDGVVEEHVLEILQPHKCIKKVAIRNYGGARFPHWIGDPSFSKMKVLKLENCHNCVSLPSLGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPSLEILKPSIAECPKLSGQLPELLPSLETLVVSKCKKLFIRAEWMLYIRDRDCLTFIARRRLPASLKRLEIENCEKLQRLF********************MLQHLSIENCPELTSLSSGVQFLEALEFLEIRDCPELESILDGLPNLKCLQSIYIWKCPSLVSFPERGLPNTISRVGIGECDKLEALPNDLHKINSLRYLSIQLCRNLVSFPEEGFPTSLTSLRIGDFKMYKTLVQWGLHRLTSLGRLYIVD

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oooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		703	2.2.26 [Sep-21-2011]
Q9LRR4		1054	Putative disease resistan	yes	no	0.783	0.522	0.36	1e-90
Q9LRR5		1424	Putative disease resistan	no	no	0.657	0.324	0.405	3e-84
Q7XBQ9		970	Disease resistance protei	N/A	no	0.803	0.582	0.336	3e-70
Q7XA39		988	Putative disease resistan	N/A	no	0.820	0.584	0.330	4e-68
Q7XA42		979	Putative disease resistan	N/A	no	0.830	0.596	0.322	3e-61
Q7XA40		992	Putative disease resistan	N/A	no	0.843	0.597	0.326	1e-59
Q9LVT4		843	Probable disease resistan	no	no	0.365	0.304	0.3	2e-16
P0DI18		1049	Probable disease resistan	no	no	0.830	0.556	0.264	1e-15
P0DI17		1049	Probable disease resistan	no	no	0.830	0.556	0.264	1e-15
O81825		919	Probable disease resistan	no	no	0.685	0.524	0.252	3e-15

>sp\|Q9LRR4\|R13L1_ARATH Putative disease resistance RPP13-like protein 1 OS=Arabidopsis thaliana GN=RPPL1 PE=3 SV=1	Back alignment and function desciption

 Score =  335 bits (858), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 225/625 (36%), Positives = 337/625 (53%), Gaps = 74/625 (11%)

Query: 6    WDDILDSKIWDLP-QQSGVLPVLRLSYHHLPSHLKRCFAYCAIFPKDYEFNEKELTFLWM 64
            W+ +L S+IWDLP  +S +LPVLR+SY++LP+HLKRCFAYC+IFPK + F + ++  LWM
Sbjct: 393  WERVLSSRIWDLPADKSNLLPVLRVSYYYLPAHLKRCFAYCSIFPKGHAFEKDKVVLLWM 452

Query: 65   AGGIIRQSRKNERLEDLGGKCFHDLVSRSIFPQTSSGSSKFVMHDLIHDLAELVSRETIF 124
            A G ++Q+R ++ LE+LG + F +L SRS+  +T    ++++MHD I++LA+  S E   
Sbjct: 453  AEGFLQQTRSSKNLEELGNEYFSELESRSLLQKT---KTRYIMHDFINELAQFASGEFSS 509

Query: 125  RLEEANLSSRRFERIRHASYTRGRYDGKNKFKVFNEIEHLRTFLPL---HERRGYYIPRT 181
            + E+     +  ER R+ SY R  Y    +F+   E++ LRTFLPL   +  R   + + 
Sbjct: 510  KFEDG-CKLQVSERTRYLSYLRDNYAEPMEFEALREVKFLRTFLPLSLTNSSRSCCLDQM 568

Query: 182  VLSDLLPKFRRLRMLSLQGYCIGELPMS-FEDLRLLRLLNLADTDIRSLPESTCTLLNLE 240
            V   LLP   RLR+LSL  Y I  LP   F+++   R L+L+ T++  LP+S C + NL+
Sbjct: 569  VSEKLLPTLTRLRVLSLSHYKIARLPPDFFKNISHARFLDLSRTELEKLPKSLCYMYNLQ 628

Query: 241  ILILRNCSRLIKLPPKMRNLINLRHLDIRGAKLLKEMPFGMKELKNLQTLSNFIVGKGET 300
             L+L  CS L +LP  + NLINLR+LD+ G K L++MP     LK+LQTL+ F V   + 
Sbjct: 629  TLLLSYCSSLKELPTDISNLINLRYLDLIGTK-LRQMPRRFGRLKSLQTLTTFFVSASD- 686

Query: 301  ASGLEDLKCLNFLCDELCMSGLENVNNPQNAREATVCEKHNLEALTLDWGSQFDNSRDGV 360
             S + +L  L+ L  +L +  L+ V +  +A EA +  K +L  +   W +   +S +  
Sbjct: 687  GSRISELGGLHDLHGKLKIVELQRVVDVADAAEANLNSKKHLREIDFVWRTGSSSSENNT 746

Query: 361  ------VEEHVLEILQPHKCIKKVAIRNYGGARFPHWIGDPSFSKMKVLKLENCHNCVSL 414
                   E  V E L+PH+ I+K+AI  Y G RFP W+ DPSFS++  ++L  C  C SL
Sbjct: 747  NPHRTQNEAEVFEKLRPHRHIEKLAIERYKGRRFPDWLSDPSFSRIVCIRLRECQYCTSL 806

Query: 415  PSLGLLSSLKHLAVKGLKKLKSIESEVY------GEGFSMPFPSLEILK----------- 457
            PSLG L  LK L + G+  L+SI  + Y       +    PF SLE L+           
Sbjct: 807  PSLGQLPCLKELHISGMVGLQSIGRKFYFSDQQLRDQDQQPFRSLETLRFDNLPDWQEWL 866

Query: 458  ----------PS-----IAECPKLSGQLPELLPSLETLVVSKCKKLFIRAEWMLY-IRDR 501
                      PS     I  CP+L+G LP  LPSL +L + KC  L  + +   Y  R+ 
Sbjct: 867  DVRVTRGDLFPSLKKLFILRCPELTGTLPTFLPSLISLHIYKCGLLDFQPDHHEYSYRNL 926

Query: 502  DCLTFIAR----RRLP----ASLKRLEIENCEKLQRLFDDEEDASSSSPSPASSSSPVML 553
              L+  +      + P    A+L +LE++ C  L  L    E              P  L
Sbjct: 927  QTLSIKSSCDTLVKFPLNHFANLDKLEVDQCTSLYSLELSNEHL----------RGPNAL 976

Query: 554  QHLSIENC------PELTSLSSGVQ 572
            ++L I +C      P+L +L   +Q
Sbjct: 977  RNLRINDCQNLQLLPKLNALPQNLQ 1001

Potential disease resistance protein.
Arabidopsis thaliana (taxid: 3702)

>sp\|Q9LRR5\|DRL21_ARATH Putative disease resistance protein At3g14460 OS=Arabidopsis thaliana GN=At3g14460 PE=3 SV=1	Back alignment and function description

>sp\|Q7XBQ9\|RGA2_SOLBU Disease resistance protein RGA2 OS=Solanum bulbocastanum GN=RGA2 PE=1 SV=1	Back alignment and function description

>sp\|Q7XA39\|RGA4_SOLBU Putative disease resistance protein RGA4 OS=Solanum bulbocastanum GN=RGA4 PE=2 SV=1	Back alignment and function description

>sp\|Q7XA42\|RGA1_SOLBU Putative disease resistance protein RGA1 OS=Solanum bulbocastanum GN=RGA1 PE=2 SV=2	Back alignment and function description

>sp\|Q7XA40\|RGA3_SOLBU Putative disease resistance protein RGA3 OS=Solanum bulbocastanum GN=RGA3 PE=2 SV=2	Back alignment and function description

>sp\|Q9LVT4\|DRL37_ARATH Probable disease resistance protein At5g47250 OS=Arabidopsis thaliana GN=At5g47250 PE=2 SV=1	Back alignment and function description

>sp\|P0DI18\|DRL45_ARATH Probable disease resistance protein RDL6 OS=Arabidopsis thaliana GN=RDL6 PE=2 SV=1	Back alignment and function description

>sp\|P0DI17\|DRL11_ARATH Probable disease resistance protein RF9 OS=Arabidopsis thaliana GN=RF9 PE=2 SV=1	Back alignment and function description

>sp\|O81825\|DRL28_ARATH Probable disease resistance protein At4g27220 OS=Arabidopsis thaliana GN=At4g27220 PE=2 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		703
359487176		1308	PREDICTED: putative disease resistance R	0.995	0.535	0.410	1e-144
359487172		1310	PREDICTED: putative disease resistance R	0.944	0.506	0.431	1e-143
147766792		2277	hypothetical protein VITISV_039904 [Viti	0.941	0.290	0.429	1e-142
359495024		1390	PREDICTED: putative disease resistance p	0.961	0.486	0.414	1e-140
147860511		1406	hypothetical protein VITISV_014536 [Viti	0.961	0.480	0.412	1e-140
147862409		1466	hypothetical protein VITISV_042289 [Viti	0.992	0.476	0.403	1e-139
359495026		2204	PREDICTED: uncharacterized protein LOC10	0.960	0.306	0.418	1e-139
296090374		908	unnamed protein product [Vitis vinifera]	0.945	0.732	0.438	1e-139
225465831		1483	PREDICTED: putative disease resistance R	0.934	0.443	0.417	1e-138
225449649		1418	PREDICTED: putative disease resistance p	0.924	0.458	0.439	1e-136

>gi\|359487176\|ref\|XP_003633526.1\| PREDICTED: putative disease resistance RPP13-like protein 1-like [Vitis vinifera]	Back alignment and taxonomy information

 Score =  520 bits (1338), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 326/795 (41%), Positives = 449/795 (56%), Gaps = 95/795 (11%)

Query: 1    MRHDAWDDILDSKIWDLPQQ-SGVLPVLRLSYHHLPSHLKRCFAYCAIFPKDYEFNEKEL 59
            + H+AWDDIL SKIWDLP++ SGVLP L+LSYHHLPSHLK+CFAYCAIFPK YEF + EL
Sbjct: 392  LNHEAWDDILKSKIWDLPEEKSGVLPALKLSYHHLPSHLKQCFAYCAIFPKGYEFKKDEL 451

Query: 60   TFLWMAGGIIRQSRKNERLEDLGGKCFHDLVSRSIFPQTSSGSSKFVMHDLIHDLAELVS 119
              LWM  G ++Q++  +R+EDLG K F +L+SRS F Q+S    +F+MHDLIHDLA+ ++
Sbjct: 452  ILLWMGEGFLQQTKGKKRMEDLGSKYFSELLSRSFFQQSSDIMPRFMMHDLIHDLAQSIA 511

Query: 120  RETIFRLEEANLSSRR-FERIRHASYTRGRYDGKNKFKVFNEIEHLRTFLPLHERRGY-- 176
                F LE+   ++   F++ RH S+ R   +   KF+V ++ ++LRTFL L     +  
Sbjct: 512  GNVCFNLEDKLENNENIFQKARHLSFIRQANEIFKKFEVVDKGKYLRTFLALPISVSFMK 571

Query: 177  ---YIPRTVLSDLLPKFRRLRMLSLQGYCIGELPMSFEDLRLLRLLNLADTDIRSLPEST 233
               +I   V  DLL + + LR+LSL GY + ELP S ++L  LR LNL  + I+ LP S 
Sbjct: 572  SLSFITTKVTHDLLMEMKCLRVLSLSGYKMSELPSSIDNLSHLRYLNLCRSSIKRLPNSV 631

Query: 234  CTLLNLEILILRNCSRLIKLPPKMRNLINLRHLDIRGAKLLKEMPFGMKELKNLQTLSNF 293
              L NL+ LILR+C  L ++P  M NLINLRHLDI G   L+EMP  M  L NLQTLS F
Sbjct: 632  GHLYNLQTLILRDCWSLTEMPVGMGNLINLRHLDIAGTSQLQEMPPRMGSLTNLQTLSKF 691

Query: 294  IVGKGETASGLEDLKCLNFLCDELCMSGLENVNNPQNAREATVCEKHNLEALTLDWGSQF 353
            IVGKG   S +++LK L  L  EL + GL N  N ++A +A +  K ++E LT+ W   F
Sbjct: 692  IVGKG-NGSSIQELKHLLDLQGELSIQGLHNARNTRDAVDACLKNKCHIEELTMGWSGDF 750

Query: 354  DNSRDGVVEEHVLEILQPHKCIKKVAIRNYGGARFPHWIGDPSFSKMKVLKLENCHNCVS 413
            D+SR+ + E  VLE+LQP + +K + +  YGG +FP WIG+PSFSKM+ L L+NC  C S
Sbjct: 751  DDSRNELNEMLVLELLQPQRNLKNLTVEFYGGPKFPSWIGNPSFSKMESLTLKNCGKCTS 810

Query: 414  LPSLGLLSSLKHLAVKGLKKLKSIESEVYGE-GFSMPFPSLEILKPS------------- 459
            LP LG LS LK L ++G+ K+K+I  E +GE     PFP LE L+               
Sbjct: 811  LPCLGRLSLLKALHIQGMCKVKTIGDEFFGEVSLFQPFPCLESLRFEDMPEWEDWCFSDM 870

Query: 460  ---------------IAECPKLSGQLPELLPSLETLVVSKCKKLFIRAEWMLY-----IR 499
                           I ECPKL+G LP  LPSL  L + +C KL      + Y     ++
Sbjct: 871  VEECEGLFCCLRELRIRECPKLTGSLPNCLPSLTELEIFECPKLKAALPRLAYRLPNGLQ 930

Query: 500  DRDCLTFIARRR-----------LPASLKRLEIENCEKLQRLFDD---------EEDASS 539
               CL  ++ +            LP+ L+ L ++ C+ L+ L  +         E +   
Sbjct: 931  SLTCLEELSLQSCPKLESFPEMGLPSMLRSLVLQKCKTLKLLPHNYNSGFLEYLEIEHCP 990

Query: 540  SSPSPASSSSPVMLQHLSIENCPELTSLSSGVQFLEA---------LEFLEIRDCPELES 590
               S      P  L+ L I++C  L +L  G+    +         L+ LEI DC + + 
Sbjct: 991  CLISFPEGELPHSLKQLKIKDCANLQTLPEGMMHHNSIVKNVHPSTLKRLEIWDCGQFQP 1050

Query: 591  I---------------LDGLPNLKCLQS-------IYIWKCPSLVSFPERGLPN-TISRV 627
            I               +   PN+K L         +YI+ C  LVSFPERGLP   +  +
Sbjct: 1051 ISEQMLHSNTALEQLSISNYPNMKILPGFLHSLTYLYIYGCQGLVSFPERGLPTPNLRDL 1110

Query: 628  GIGECDKLEALPNDLHKINSLRYLSIQLCRNLVSFPEEGFPTSLTSLRIGDFKMYKT-LV 686
             I  C+ L++L + +  ++SL+ L+I+ C+ L SFPE G   +LTSL I D    K  L 
Sbjct: 1111 YINNCENLKSLSHQMQNLSSLQGLNIRNCQGLESFPECGLAPNLTSLSIRDCVTLKVPLS 1170

Query: 687  QWGLHRLTSLGRLYI 701
            +WGLHRLTSL  LYI
Sbjct: 1171 EWGLHRLTSLSSLYI 1185

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|359487172\|ref\|XP_002264364.2\| PREDICTED: putative disease resistance RPP13-like protein 1-like [Vitis vinifera]	Back alignment and taxonomy information

>gi\|147766792\|emb\|CAN69685.1\| hypothetical protein VITISV_039904 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|359495024\|ref\|XP_002267933.2\| PREDICTED: putative disease resistance protein At3g14460-like [Vitis vinifera]	Back alignment and taxonomy information

>gi\|147860511\|emb\|CAN79726.1\| hypothetical protein VITISV_014536 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|147862409\|emb\|CAN81911.1\| hypothetical protein VITISV_042289 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|359495026\|ref\|XP_003634900.1\| PREDICTED: uncharacterized protein LOC100854556 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|296090374\|emb\|CBI40193.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|225465831\|ref\|XP_002264750.1\| PREDICTED: putative disease resistance RPP13-like protein 1-like [Vitis vinifera]	Back alignment and taxonomy information

>gi\|225449649\|ref\|XP_002262753.1\| PREDICTED: putative disease resistance protein At3g14460 [Vitis vinifera]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		703
TAIR\|locus:2091662		1424	AT3G14460 [Arabidopsis thalian	0.657	0.324	0.374	1e-90
TAIR\|locus:2091672		1054	AT3G14470 [Arabidopsis thalian	0.678	0.452	0.363	1.2e-85
UNIPROTKB\|O48647		1802	O48647 "XA1" [Oryza sativa (ta	0.950	0.370	0.256	1.1e-33
TAIR\|locus:2131689		919	AT4G27220 [Arabidopsis thalian	0.406	0.311	0.274	1.5e-16
TAIR\|locus:504956186		1138	AT1G58602 [Arabidopsis thalian	0.903	0.557	0.244	9.6e-15
TAIR\|locus:2025916		906	AT1G59780 "AT1G59780" [Arabido	0.409	0.317	0.264	1.4e-14
TAIR\|locus:504956182		1049	AT1G58848 [Arabidopsis thalian	0.140	0.094	0.365	1.6e-14
TAIR\|locus:2826978		1049	AT1G59218 [Arabidopsis thalian	0.140	0.094	0.365	1.6e-14
TAIR\|locus:2077572		926	RPM1 "RESISTANCE TO P. SYRINGA	0.357	0.271	0.277	1.7e-14
TAIR\|locus:2197739		762	AT1G61300 [Arabidopsis thalian	0.378	0.349	0.253	7.9e-14

TAIR\|locus:2091662 AT3G14460 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 733 (263.1 bits), Expect = 1.0e-90, Sum P(2) = 1.0e-90
 Identities = 182/486 (37%), Positives = 265/486 (54%)

Query:    21 SGVLPVLRLSYHHLPSHLKRCFAYCAIFPKDYEFNEKELTFLWMAGGIIRQSRKNERLED 80
             + +LPVL+LSY  LP  LKRCFA C+IFPK + F+ +EL  LWMA  ++ Q R + RLED
Sbjct:   401 NSILPVLKLSYDSLPPQLKRCFALCSIFPKGHVFDREELVLLWMAIDLLYQPRSSRRLED 460

Query:    81 LGGKCFHDLVSRSIFPQTSSGSSKFVMHDLIHDLAELVSRETIFRLEEANLSSRRFERIR 140
             +G     DLV++S F +     + FVMHDL++DLA+ VS +  FRLE+ N+        R
Sbjct:   461 IGNDYLGDLVAQSFFQRLDITMTSFVMHDLMNDLAKAVSGDFCFRLEDDNIPEIP-STTR 519

Query:   141 HASYTRGRYDGKNKFKVFNEIEHLRTFLPLHER---RGYYIPRTVLSDLLPKFRRLRMLS 197
             H S++R + D    F+     E LRT LP +         +   VL+ LL     LR+LS
Sbjct:   520 HFSFSRSQCDASVAFRSICGAEFLRTILPFNSPTSLESLQLTEKVLNPLLNALSGLRILS 579

Query:   198 LQGYCIGELPMSFEDXXXXXXXXXADTDIRSLPESTCTLLNLEILILRNCSRLIKLPPKM 257
             L  Y I  LP S +          + T I+ LPE  CTL NL+ L+L NC  L  LP  +
Sbjct:   580 LSHYQITNLPKSLKGLKLLRYLDLSSTKIKELPEFVCTLCNLQTLLLSNCRDLTSLPKSI 639

Query:   258 RNLINLRHLDIRGAKLLKEMPFGMKELKNLQTLSNFIVGKGETASGLEDLKCLNFLCDEL 317
               LINLR LD+ G  L+ EMP G+K+L++LQ LSNF++G+  + +GL +LK L+ L   L
Sbjct:   640 AELINLRLLDLVGTPLV-EMPPGIKKLRSLQKLSNFVIGR-LSGAGLHELKELSHLRGTL 697

Query:   318 CMSGLENVNNPQNAREATVCEKHNLEALTLDW---GSQF-DNSRDGVV--EEHVLEILQP 371
              +S L+NV     A++A +  K  L+ L L W   GS F   S + +   ++ VL +L+P
Sbjct:   698 RISELQNVAFASEAKDAGLKRKPFLDGLILKWTVKGSGFVPGSFNALACDQKEVLRMLEP 757

Query:   372 HKCIKKVAIRNYGGARFPHWIGDPSFSKMKVLKLENCHNCVXXXXXXXXXXXXXXAVKGL 431
             H  +K   I +Y G  FP W+GD SF  +  + L +C+ C+              +++  
Sbjct:   758 HPHLKTFCIESYQGGAFPKWLGDSSFFGITSVTLSSCNLCISLPPVGQLPSLKYLSIEKF 817

Query:   432 KKLKSIESEVY-GEGFS--MPFPSLEILK----PSIAE--CPKLSGQLPELLPSLETLVV 482
               L+ +  + + GE  S  +PF SL+ILK    P   E  CP+L   +    P L+ L++
Sbjct:   818 NILQKVGLDFFFGENNSRGVPFQSLQILKFYGMPRWDEWICPELEDGI---FPCLQKLII 874

Query:   483 SKCKKL 488
              +C  L
Sbjct:   875 QRCPSL 880

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR\|locus:2091672 AT3G14470 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

UNIPROTKB\|O48647 O48647 "XA1" [Oryza sativa (taxid:4530)]	Back alignment and assigned GO terms

TAIR\|locus:2131689 AT4G27220 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:504956186 AT1G58602 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2025916 AT1G59780 "AT1G59780" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:504956182 AT1G58848 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2826978 AT1G59218 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2077572 RPM1 "RESISTANCE TO P. SYRINGAE PV MACULICOLA 1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2197739 AT1G61300 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		703
pfam00931		285	pfam00931, NB-ARC, NB-ARC domain	2e-14
PLN03210		1153	PLN03210, PLN03210, Resistant to P	1e-06
PLN03210		1153	PLN03210, PLN03210, Resistant to P	1e-06
COG4886		394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	2e-04
PLN03210		1153	PLN03210, PLN03210, Resistant to P	7e-04

>gnl\|CDD\|216202 pfam00931, NB-ARC, NB-ARC domain	Back alignment and domain information

 Score = 74.3 bits (183), Expect = 2e-14
 Identities = 30/73 (41%), Positives = 44/73 (60%), Gaps = 3/73 (4%)

Query: 4   DAWDDILDSKIWDLPQQSG---VLPVLRLSYHHLPSHLKRCFAYCAIFPKDYEFNEKELT 60
             W+ +L+    +L  + G   VL +L LSY +LP HLKRCF Y A+FP+DY   +++L 
Sbjct: 212 QEWEHVLEQLNNELAGRDGLNEVLSILSLSYDNLPMHLKRCFLYLALFPEDYNIRKEQLI 271

Query: 61  FLWMAGGIIRQSR 73
            LW+A G +  S 
Sbjct: 272 KLWIAEGFVIPSD 284

Length = 285

>gnl\|CDD\|215633 PLN03210, PLN03210, Resistant to P	Back alignment and domain information

>gnl\|CDD\|215633 PLN03210, PLN03210, Resistant to P	Back alignment and domain information

>gnl\|CDD\|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]	Back alignment and domain information

>gnl\|CDD\|215633 PLN03210, PLN03210, Resistant to P	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		703
KOG4658		889	consensus Apoptotic ATPase [Signal transduction me	100.0
PLN03210		1153	Resistant to P. syringae 6; Provisional	100.0
PLN00113		968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN00113		968	leucine-rich repeat receptor-like protein kinase;	100.0
KOG0472		565	consensus Leucine-rich repeat protein [Function un	99.93
KOG4194		873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.93
KOG0472		565	consensus Leucine-rich repeat protein [Function un	99.92
PLN03210		1153	Resistant to P. syringae 6; Provisional	99.91
KOG0444		1255	consensus Cytoskeletal regulator Flightless-I (con	99.91
KOG4194		873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.9
KOG0618		1081	consensus Serine/threonine phosphatase 2C containi	99.9
KOG0444		1255	consensus Cytoskeletal regulator Flightless-I (con	99.87
KOG0618		1081	consensus Serine/threonine phosphatase 2C containi	99.85
PRK15387		788	E3 ubiquitin-protein ligase SspH2; Provisional	99.66
PRK15387		788	E3 ubiquitin-protein ligase SspH2; Provisional	99.62
KOG4237		498	consensus Extracellular matrix protein slit, conta	99.59
KOG4237		498	consensus Extracellular matrix protein slit, conta	99.57
PRK15370		754	E3 ubiquitin-protein ligase SlrP; Provisional	99.51
PRK15370		754	E3 ubiquitin-protein ligase SlrP; Provisional	99.5
KOG0617		264	consensus Ras suppressor protein (contains leucine	99.47
KOG4658		889	consensus Apoptotic ATPase [Signal transduction me	99.41
KOG0617		264	consensus Ras suppressor protein (contains leucine	99.4
cd00116		319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.1
cd00116		319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.09
PF00931		287	NB-ARC: NB-ARC domain; InterPro: IPR002182 This is	98.83
PF14580		175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.73
PRK15386		426	type III secretion protein GogB; Provisional	98.72
KOG0532		722	consensus Leucine-rich repeat (LRR) protein, conta	98.72
PF14580		175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.7
COG4886		394	Leucine-rich repeat (LRR) protein [Function unknow	98.68
KOG3207		505	consensus Beta-tubulin folding cofactor E [Posttra	98.67
KOG0532		722	consensus Leucine-rich repeat (LRR) protein, conta	98.67
PRK15386		426	type III secretion protein GogB; Provisional	98.66
KOG1259		490	consensus Nischarin, modulator of integrin alpha5	98.46
PLN03150		623	hypothetical protein; Provisional	98.46
PF13855		61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.45
KOG3207		505	consensus Beta-tubulin folding cofactor E [Posttra	98.42
COG4886		394	Leucine-rich repeat (LRR) protein [Function unknow	98.42
KOG4341		483	consensus F-box protein containing LRR [General fu	98.36
PF13855		61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.36
KOG1259		490	consensus Nischarin, modulator of integrin alpha5	98.34
PLN03150		623	hypothetical protein; Provisional	98.33
KOG4341		483	consensus F-box protein containing LRR [General fu	98.23
PF12799		44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.16
PF12799		44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.09
KOG0531		414	consensus Protein phosphatase 1, regulatory subuni	98.09
KOG1909		382	consensus Ran GTPase-activating protein [RNA proce	97.92
KOG1909		382	consensus Ran GTPase-activating protein [RNA proce	97.92
KOG2120		419	consensus SCF ubiquitin ligase, Skp2 component [Po	97.72
KOG1859		1096	consensus Leucine-rich repeat proteins [General fu	97.68
KOG0531		414	consensus Protein phosphatase 1, regulatory subuni	97.64
KOG3665		699	consensus ZYG-1-like serine/threonine protein kina	97.59
KOG2120		419	consensus SCF ubiquitin ligase, Skp2 component [Po	97.51
KOG2982		418	consensus Uncharacterized conserved protein [Funct	97.45
KOG4579		177	consensus Leucine-rich repeat (LRR) protein associ	97.42
KOG4579		177	consensus Leucine-rich repeat (LRR) protein associ	97.33
KOG1859		1096	consensus Leucine-rich repeat proteins [General fu	97.32
KOG2982		418	consensus Uncharacterized conserved protein [Funct	97.24
KOG3665		699	consensus ZYG-1-like serine/threonine protein kina	97.08
KOG1644		233	consensus U2-associated snRNP A' protein [RNA proc	96.69
COG5238		388	RNA1 Ran GTPase-activating protein (RanGAP) involv	96.63
COG5238		388	RNA1 Ran GTPase-activating protein (RanGAP) involv	96.55
PF00560		22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.4
KOG1644		233	consensus U2-associated snRNP A' protein [RNA proc	96.19
KOG2739		260	consensus Leucine-rich acidic nuclear protein [Cel	96.05
KOG2123		388	consensus Uncharacterized conserved protein [Funct	95.94
PF00560		22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.79
KOG3864		221	consensus Uncharacterized conserved protein [Funct	95.76
KOG2123		388	consensus Uncharacterized conserved protein [Funct	95.65
KOG2739		260	consensus Leucine-rich acidic nuclear protein [Cel	94.96
KOG0473		326	consensus Leucine-rich repeat protein [Function un	94.94
KOG3864		221	consensus Uncharacterized conserved protein [Funct	94.56
PF13504		17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	94.39
PF13306		129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	94.25
PF13504		17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	93.64
KOG1947		482	consensus Leucine rich repeat proteins, some prote	93.6
KOG1947		482	consensus Leucine rich repeat proteins, some prote	93.2
PF13306		129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	92.85
smart00370		26	LRR Leucine-rich repeats, outliers.	91.11
smart00369		26	LRR_TYP Leucine-rich repeats, typical (most popula	91.11
KOG0473		326	consensus Leucine-rich repeat protein [Function un	88.71
smart00367		26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	85.43
smart00369		26	LRR_TYP Leucine-rich repeats, typical (most popula	85.39
smart00370		26	LRR Leucine-rich repeats, outliers.	85.39

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]	Back alignment and domain information

Probab=100.00  E-value=8.7e-48  Score=423.78  Aligned_cols=265  Identities=29%  Similarity=0.483  Sum_probs=222.9

Q ss_pred             CChHHHHHHHhhcCcCCCC-----CCCchHHHHHhhccCchhhhhHhhhhcCCCCCCccCHHHHHHHHHHCCCCccCCCC
Q 046587            1 MRHDAWDDILDSKIWDLPQ-----QSGVLPVLRLSYHHLPSHLKRCFAYCAIFPKDYEFNEKELTFLWMAGGIIRQSRKN   75 (703)
Q Consensus         1 k~~~~W~~~l~~~~~~~~~-----~~~i~~~L~lSYd~L~~~~K~cFL~~a~fp~~~~i~~~~Li~~wi~~g~~~~~~~~   75 (703)
                      +.++||+++.+...+.+..     ++.|+++|++|||+||+++|.||||||+|||||+|++++||.|||||||+.+.+.+
T Consensus       370 ~t~~eW~~~~~~l~s~~~~~~~~~~~~i~~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~  449 (889)
T KOG4658|consen  370 KTVQEWRRALNVLKSSLAADFSGMEESILPILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGG  449 (889)
T ss_pred             CcHHHHHHHHccccccccCCCCchhhhhHHhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccc
Confidence            3567999999876555222     46899999999999998899999999999999999999999999999999997788


Q ss_pred             chHHHHHHHHHHHHHhCCCccccC--CCCCceeeCcHHHHHHHHhhc-----cceEEEecC-----CcccccCCceEEEE
Q 046587           76 ERLEDLGGKCFHDLVSRSIFPQTS--SGSSKFVMHDLIHDLAELVSR-----ETIFRLEEA-----NLSSRRFERIRHAS  143 (703)
Q Consensus        76 ~~~~~~~~~~~~~L~~~~ll~~~~--~~~~~~~mHdlv~d~a~~i~~-----~~~~~~~~~-----~~~~~~~~~~r~l~  143 (703)
                      +.++++|+.|+.+|++++|++...  +...+|+|||+|||||.|+|+     ++...+...     ......+..+|+++
T Consensus       450 ~~~~d~G~~~i~~LV~~~Ll~~~~~~~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s  529 (889)
T KOG4658|consen  450 ETAEDVGYDYIEELVRASLLIEERDEGRKETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMS  529 (889)
T ss_pred             cchhcchHHHHHHHHHHHHHhhcccccceeEEEeeHHHHHHHHHHhccccccccceEEECCcCccccccccchhheeEEE
Confidence            999999999999999999999865  456889999999999999999     555444432     12234456789999


Q ss_pred             EEcCccCcccccccccCCCceeEeeeccCCCCcccchhhhhhhhcCCCcccEEecCCCC-CCccCccccCCCcCceEecc
Q 046587          144 YTRGRYDGKNKFKVFNEIEHLRTFLPLHERRGYYIPRTVLSDLLPKFRRLRMLSLQGYC-IGELPMSFEDLRLLRLLNLA  222 (703)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~-l~~lp~~i~~l~~L~~L~L~  222 (703)
                      +..+....   ...-..+++|++|.+..+..   ....+...+|..++.||||||++|. +..+|.+|+.|.+||||+++
T Consensus       530 ~~~~~~~~---~~~~~~~~~L~tLll~~n~~---~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~  603 (889)
T KOG4658|consen  530 LMNNKIEH---IAGSSENPKLRTLLLQRNSD---WLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLS  603 (889)
T ss_pred             Eeccchhh---ccCCCCCCccceEEEeecch---hhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhccccc
Confidence            88875432   23334566899999988753   2345566779999999999999887 79999999999999999999


Q ss_pred             CCCCccccccccccccCcEEecCCCCCCcccCccccCCCcccEEeecCc
Q 046587          223 DTDIRSLPESTCTLLNLEILILRNCSRLIKLPPKMRNLINLRHLDIRGA  271 (703)
Q Consensus       223 ~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~  271 (703)
                      ++.|..+|.++++|.+|.+|++..+..+..+|..+..|++||+|.+...
T Consensus       604 ~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s  652 (889)
T KOG4658|consen  604 DTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRS  652 (889)
T ss_pred             CCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeecc
Confidence            9999999999999999999999998777777776677999999999765

>PLN03210 Resistant to P	Back alignment and domain information

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional	Back alignment and domain information

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional	Back alignment and domain information

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]	Back alignment and domain information

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]	Back alignment and domain information

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]	Back alignment and domain information

>PLN03210 Resistant to P	Back alignment and domain information

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]	Back alignment and domain information

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]	Back alignment and domain information

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]	Back alignment and domain information

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]	Back alignment and domain information

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]	Back alignment and domain information

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional	Back alignment and domain information

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional	Back alignment and domain information

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]	Back alignment and domain information

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]	Back alignment and domain information

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional	Back alignment and domain information

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional	Back alignment and domain information

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]	Back alignment and domain information

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]	Back alignment and domain information

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]	Back alignment and domain information

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily	Back alignment and domain information

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily	Back alignment and domain information

>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []	Back alignment and domain information

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A	Back alignment and domain information

>PRK15386 type III secretion protein GogB; Provisional	Back alignment and domain information

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]	Back alignment and domain information

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A	Back alignment and domain information

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]	Back alignment and domain information

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]	Back alignment and domain information

>PRK15386 type III secretion protein GogB; Provisional	Back alignment and domain information

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]	Back alignment and domain information

>PLN03150 hypothetical protein; Provisional	Back alignment and domain information

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A	Back alignment and domain information

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]	Back alignment and domain information

>KOG4341 consensus F-box protein containing LRR [General function prediction only]	Back alignment and domain information

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A	Back alignment and domain information

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]	Back alignment and domain information

>PLN03150 hypothetical protein; Provisional	Back alignment and domain information

>KOG4341 consensus F-box protein containing LRR [General function prediction only]	Back alignment and domain information

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B	Back alignment and domain information

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B	Back alignment and domain information

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]	Back alignment and domain information

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]	Back alignment and domain information

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]	Back alignment and domain information

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]	Back alignment and domain information

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]	Back alignment and domain information

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]	Back alignment and domain information

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]	Back alignment and domain information

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]	Back alignment and domain information

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]	Back alignment and domain information

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]	Back alignment and domain information

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]	Back alignment and domain information

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]	Back alignment and domain information

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]	Back alignment and domain information

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []	Back alignment and domain information

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]	Back alignment and domain information

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]	Back alignment and domain information

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []	Back alignment and domain information

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]	Back alignment and domain information

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]	Back alignment and domain information

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D	Back alignment and domain information

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A	Back alignment and domain information

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D	Back alignment and domain information

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]	Back alignment and domain information

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]	Back alignment and domain information

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A	Back alignment and domain information

>smart00370 LRR Leucine-rich repeats, outliers	Back alignment and domain information

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily	Back alignment and domain information

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]	Back alignment and domain information

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily	Back alignment and domain information

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily	Back alignment and domain information

>smart00370 LRR Leucine-rich repeats, outliers	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		703
4fcg_A		328	Structure Of The Leucine-Rich Repeat Domain Of The		6e-04

>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type Iii Effector Xcv3220 (Xopl) Length = 328

Back alignment and structure

Iteration: 1

Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 44/161 (27%), Positives = 74/161 (45%), Gaps = 13/161 (8%) Query: 510 RRLPAS------LKRLEIENCEKLQRLFDDEEDXXXXXXXXXXXXXXVMLQHLSIENCPE 563 R LPAS L+ L I C +L L + V LQ L +E Sbjct: 140 RALPASIASLNRLRELSIRACPELTEL----PEPLASTDASGEHQGLVNLQSLRLEWT-G 194 Query: 564 LTSLSSGVQFLEALEFLEIRDCPELESILDGLPNLKCLQSIYIWKCPSLVSFPER-GLPN 622 + SL + + L+ L+ L+IR+ P L ++ + +L L+ + + C +L ++P G Sbjct: 195 IRSLPASIANLQNLKSLKIRNSP-LSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRA 253 Query: 623 TISRVGIGECDKLEALPNDLHKINSLRYLSIQLCRNLVSFP 663 + R+ + +C L LP D+H++ L L ++ C NL P Sbjct: 254 PLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLP 294

PyMOL of 4fcg

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		703
1z6t_A		591	APAF-1, apoptotic protease activating factor 1; ca	9e-38
2a5y_B		549	CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis	3e-28
4fcg_A		328	Uncharacterized protein; structural genomics, PSI-	3e-17
4fcg_A		328	Uncharacterized protein; structural genomics, PSI-	4e-15
4fcg_A		328	Uncharacterized protein; structural genomics, PSI-	1e-12
4fcg_A		328	Uncharacterized protein; structural genomics, PSI-	3e-12
4fcg_A		328	Uncharacterized protein; structural genomics, PSI-	3e-10
4fcg_A		328	Uncharacterized protein; structural genomics, PSI-	1e-09
4fcg_A		328	Uncharacterized protein; structural genomics, PSI-	2e-09
4fcg_A		328	Uncharacterized protein; structural genomics, PSI-	1e-04
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-15
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-14
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-08
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-07
2z81_A		549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-13
3jqh_A		167	C-type lectin domain family 4 member M; DC-signr,	6e-12
3jqh_A		167	C-type lectin domain family 4 member M; DC-signr,	3e-11
3jqh_A		167	C-type lectin domain family 4 member M; DC-signr,	4e-11
3jqh_A		167	C-type lectin domain family 4 member M; DC-signr,	5e-11
3j0a_A		844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-11
3j0a_A		844	TOLL-like receptor 5; membrane protein, leucine-ri	6e-08
3j0a_A		844	TOLL-like receptor 5; membrane protein, leucine-ri	6e-04
4ecn_A		876	Leucine-rich repeat protein; leucine-rich repeats,	2e-09
4ecn_A		876	Leucine-rich repeat protein; leucine-rich repeats,	6e-06
4ecn_A		876	Leucine-rich repeat protein; leucine-rich repeats,	7e-06
4ecn_A		876	Leucine-rich repeat protein; leucine-rich repeats,	9e-06
4ecn_A		876	Leucine-rich repeat protein; leucine-rich repeats,	1e-05
4ecn_A		876	Leucine-rich repeat protein; leucine-rich repeats,	1e-05
4ecn_A		876	Leucine-rich repeat protein; leucine-rich repeats,	4e-05
4ecn_A		876	Leucine-rich repeat protein; leucine-rich repeats,	1e-04
4ecn_A		876	Leucine-rich repeat protein; leucine-rich repeats,	3e-04
3t6q_A		606	CD180 antigen; protein-protein complex, leucine ri	3e-09
3t6q_A		606	CD180 antigen; protein-protein complex, leucine ri	2e-07
3t6q_A		606	CD180 antigen; protein-protein complex, leucine ri	2e-05
3t6q_A		606	CD180 antigen; protein-protein complex, leucine ri	9e-04
2z63_A		570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-09
2z63_A		570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-08
2z63_A		570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-06
3zyi_A		452	Leucine-rich repeat-containing protein 4; cell adh	9e-09
3zyi_A		452	Leucine-rich repeat-containing protein 4; cell adh	4e-05
2id5_A		477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-08
2id5_A		477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-07
2id5_A		477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-07
2id5_A		477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	8e-07
2id5_A		477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-06
2id5_A		477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	8e-04
3vq2_A		606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-08
3vq2_A		606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-06
3vq2_A		606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-04
4eco_A		636	Uncharacterized protein; leucine-rich repeats, pro	3e-08
4eco_A		636	Uncharacterized protein; leucine-rich repeats, pro	2e-07
4eco_A		636	Uncharacterized protein; leucine-rich repeats, pro	1e-04
4eco_A		636	Uncharacterized protein; leucine-rich repeats, pro	3e-04
4eco_A		636	Uncharacterized protein; leucine-rich repeats, pro	3e-04
4eco_A		636	Uncharacterized protein; leucine-rich repeats, pro	3e-04
4eco_A		636	Uncharacterized protein; leucine-rich repeats, pro	8e-04
1ziw_A		680	TOLL-like receptor 3; innate immunity, immune syst	5e-08
1ziw_A		680	TOLL-like receptor 3; innate immunity, immune syst	4e-06
1ziw_A		680	TOLL-like receptor 3; innate immunity, immune syst	5e-06
1ziw_A		680	TOLL-like receptor 3; innate immunity, immune syst	1e-05
1ziw_A		680	TOLL-like receptor 3; innate immunity, immune syst	4e-05
1ziw_A		680	TOLL-like receptor 3; innate immunity, immune syst	1e-04
1ziw_A		680	TOLL-like receptor 3; innate immunity, immune syst	2e-04
1ziw_A		680	TOLL-like receptor 3; innate immunity, immune syst	8e-04
3o53_A		317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	6e-08
3o53_A		317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-06
3o53_A		317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	6e-05
3o53_A		317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-04
3o6n_A		390	APL1; leucine-rich repeat, protein binding; HET: N	6e-08
3o6n_A		390	APL1; leucine-rich repeat, protein binding; HET: N	1e-07
3o6n_A		390	APL1; leucine-rich repeat, protein binding; HET: N	9e-07
3o6n_A		390	APL1; leucine-rich repeat, protein binding; HET: N	1e-06
3o6n_A		390	APL1; leucine-rich repeat, protein binding; HET: N	1e-05
3o6n_A		390	APL1; leucine-rich repeat, protein binding; HET: N	4e-04
1jl5_A		454	Outer protein YOPM; leucine-rich repeat, molecular	8e-08
1jl5_A		454	Outer protein YOPM; leucine-rich repeat, molecular	4e-07
1jl5_A		454	Outer protein YOPM; leucine-rich repeat, molecular	7e-06
1jl5_A		454	Outer protein YOPM; leucine-rich repeat, molecular	1e-05
3cvr_A		571	Invasion plasmid antigen; leucine rich repeat and	1e-07
3cvr_A		571	Invasion plasmid antigen; leucine rich repeat and	2e-04
3fxi_A		605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-07
3fxi_A		605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	9e-07
3fxi_A		605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-04
3fxi_A		605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-04
3oja_B		597	Anopheles plasmodium-responsive leucine-rich REPE	2e-07
3oja_B		597	Anopheles plasmodium-responsive leucine-rich REPE	9e-07
3oja_B		597	Anopheles plasmodium-responsive leucine-rich REPE	1e-06
3oja_B		597	Anopheles plasmodium-responsive leucine-rich REPE	5e-06
3oja_B		597	Anopheles plasmodium-responsive leucine-rich REPE	4e-05
3oja_B		597	Anopheles plasmodium-responsive leucine-rich REPE	3e-04
3oja_A		487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-07
3oja_A		487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-06
3oja_A		487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-06
3g06_A		622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	5e-07
3g06_A		622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	7e-07
3g06_A		622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-06
3g06_A		622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	5e-06
3g06_A		622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-05
3g06_A		622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-04
3zyj_A		440	Leucine-rich repeat-containing protein 4C; cell ad	5e-07
3zyj_A		440	Leucine-rich repeat-containing protein 4C; cell ad	2e-05
3zyj_A		440	Leucine-rich repeat-containing protein 4C; cell ad	3e-05
2z66_A		306	Variable lymphocyte receptor B, TOLL-like recepto;	5e-07
2z66_A		306	Variable lymphocyte receptor B, TOLL-like recepto;	8e-04
1m9s_A		605	Internalin B; cell invasion, GW domains, SH3 domai	5e-07
1m9s_A		605	Internalin B; cell invasion, GW domains, SH3 domai	2e-05
1xku_A		330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-06
1xku_A		330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-05
1xku_A		330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-04
4ay9_X		350	Follicle-stimulating hormone receptor; hormone-rec	2e-06
4ay9_X		350	Follicle-stimulating hormone receptor; hormone-rec	3e-04
1ozn_A		285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-06
1ozn_A		285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-06
4ezg_A		197	Putative uncharacterized protein; internalin-A, le	3e-06
1p9a_G		290	Platelet glycoprotein IB alpha chain precursor; pl	6e-06
4fmz_A		347	Internalin; leucine rich repeat, structural genomi	7e-06
4fmz_A		347	Internalin; leucine rich repeat, structural genomi	4e-05
4fmz_A		347	Internalin; leucine rich repeat, structural genomi	6e-05
2z7x_B		520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-05
2z7x_B		520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-04
1h6u_A		308	Internalin H; cell adhesion, leucine rich repeat,	1e-05
1h6u_A		308	Internalin H; cell adhesion, leucine rich repeat,	2e-04
2xot_A		361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-05
1o6v_A		466	Internalin A; bacterial infection, extracellular r	2e-05
1o6v_A		466	Internalin A; bacterial infection, extracellular r	3e-05
2p1m_B		594	Transport inhibitor response 1 protein; F-BOX, leu	2e-05
2ft3_A		332	Biglycan; proteoglycan, dimer interface, structura	2e-05
2ft3_A		332	Biglycan; proteoglycan, dimer interface, structura	7e-05
2ft3_A		332	Biglycan; proteoglycan, dimer interface, structura	1e-04
1dce_A		567	Protein (RAB geranylgeranyltransferase alpha subun	4e-05
2xwt_C		239	Thyrotropin receptor; signaling protein-immune sys	4e-05
2xwt_C		239	Thyrotropin receptor; signaling protein-immune sys	1e-04
2z80_A		353	TOLL-like receptor 2, variable lymphocyte recepto;	4e-05
2z80_A		353	TOLL-like receptor 2, variable lymphocyte recepto;	8e-05
3a79_B		562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	4e-05
3v47_A		455	TOLL-like receptor 5B and variable lymphocyte REC	5e-05
3rgz_A		768	Protein brassinosteroid insensitive 1; phytohormon	6e-05
3rgz_A		768	Protein brassinosteroid insensitive 1; phytohormon	1e-04
3rgz_A		768	Protein brassinosteroid insensitive 1; phytohormon	3e-04
3rgz_A		768	Protein brassinosteroid insensitive 1; phytohormon	4e-04
1xeu_A		263	Internalin C; cellular invasion, leucine-rich repe	6e-05
1h6t_A		291	Internalin B; cell adhesion, leucine rich repeat,	6e-05
1a9n_A		176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	8e-05
3bz5_A		457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	9e-05
3bz5_A		457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-04
2v9t_B		220	SLIT homolog 2 protein N-product; structural prote	3e-04
2wfh_A		193	SLIT homolog 2 protein C-product; developmental pr	3e-04
2v70_A		220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	3e-04
2z62_A		276	TOLL-like receptor 4, variable lymphocyte recepto;	5e-04
3ogk_B		592	Coronatine-insensitive protein 1; leucine rich rep	5e-04
1ogq_A		313	PGIP-2, polygalacturonase inhibiting protein; inhi	7e-04

>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens} Length = 591	Back alignment and structure

 Score =  148 bits (374), Expect = 9e-38
 Identities = 36/247 (14%), Positives = 78/247 (31%), Gaps = 40/247 (16%)

Query: 2   RHDAWDDILDSKIWDLPQQS------GVLPVLRLSYHHLPSHLKRCFAYCAIFPKDYEFN 55
           R + +   L +K +   ++S       +   + +S   L   +K  +   +I  KD +  
Sbjct: 337 RWEYYLKQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVP 396

Query: 56  EKELTFLWMAGGIIRQSRKNERLEDLGGKCFHDLVSRS-IFPQTSSGSSKFVMHDLIHDL 114
            K L  LW            E   +       + V++S +F   +  S ++ +HDL  D 
Sbjct: 397 TKVLCILWDM----------E--TEEVEDILQEFVNKSLLFCDRNGKSFRYYLHDLQVDF 444

Query: 115 AELVSRETIFRLEEANLSSRRFERIRHASYTRGRYDGKNKFKVFNEI-EHLRTFLPLHER 173
               +   +  L +  ++    +  R+        D ++    +N +  H+ +     E 
Sbjct: 445 LTEKNCSQLQDLHKKIIT----QFQRYHQPHTLSPDQEDCMYWYNFLAYHMASAKMHKEL 500

Query: 174 RGYY---------IPRTVLSDLLPKFRRLRMLSLQGYCIGELPMSFEDLRLLRLLNLADT 224
                              + L+ +F   R          +     E+      L+L   
Sbjct: 501 CALMFSLDWIKAKTELVGPAHLIHEFVEYRH-----ILDEKDCAVSEN--FQEFLSLNGH 553

Query: 225 DIRSLPE 231
            +   P 
Sbjct: 554 LLGRQPF 560

PyMOL of 1z6t

>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A* Length = 549	Back alignment and structure

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328	Back alignment and structure

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328	Back alignment and structure

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328	Back alignment and structure

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328	Back alignment and structure

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328	Back alignment and structure

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328	Back alignment and structure

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328	Back alignment and structure

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549	Back alignment and structure

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844	Back alignment and structure

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844	Back alignment and structure

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844	Back alignment and structure

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876	Back alignment and structure

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876	Back alignment and structure

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876	Back alignment and structure

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876	Back alignment and structure

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876	Back alignment and structure

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876	Back alignment and structure

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876	Back alignment and structure

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876	Back alignment and structure

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876	Back alignment and structure

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606	Back alignment and structure

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606	Back alignment and structure

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606	Back alignment and structure

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606	Back alignment and structure

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570	Back alignment and structure

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570	Back alignment and structure

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570	Back alignment and structure

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452	Back alignment and structure

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452	Back alignment and structure

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477	Back alignment and structure

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477	Back alignment and structure

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477	Back alignment and structure

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477	Back alignment and structure

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477	Back alignment and structure

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477	Back alignment and structure

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606	Back alignment and structure

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606	Back alignment and structure

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606	Back alignment and structure

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636	Back alignment and structure

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636	Back alignment and structure

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636	Back alignment and structure

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636	Back alignment and structure

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636	Back alignment and structure

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636	Back alignment and structure

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636	Back alignment and structure

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680	Back alignment and structure

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680	Back alignment and structure

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680	Back alignment and structure

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680	Back alignment and structure

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680	Back alignment and structure

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680	Back alignment and structure

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680	Back alignment and structure

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680	Back alignment and structure

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317	Back alignment and structure

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317	Back alignment and structure

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317	Back alignment and structure

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317	Back alignment and structure

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390	Back alignment and structure

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390	Back alignment and structure

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390	Back alignment and structure

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390	Back alignment and structure

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390	Back alignment and structure

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390	Back alignment and structure

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454	Back alignment and structure

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454	Back alignment and structure

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454	Back alignment and structure

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454	Back alignment and structure

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571	Back alignment and structure

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571	Back alignment and structure

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605	Back alignment and structure

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605	Back alignment and structure

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605	Back alignment and structure

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605	Back alignment and structure

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597	Back alignment and structure

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597	Back alignment and structure

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597	Back alignment and structure

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597	Back alignment and structure

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597	Back alignment and structure

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597	Back alignment and structure

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487	Back alignment and structure

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487	Back alignment and structure

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487	Back alignment and structure

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622	Back alignment and structure

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622	Back alignment and structure

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622	Back alignment and structure

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622	Back alignment and structure

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622	Back alignment and structure

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622	Back alignment and structure

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440	Back alignment and structure

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440	Back alignment and structure

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440	Back alignment and structure

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306	Back alignment and structure

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306	Back alignment and structure

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605	Back alignment and structure

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605	Back alignment and structure

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330	Back alignment and structure

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330	Back alignment and structure

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330	Back alignment and structure

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350	Back alignment and structure

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350	Back alignment and structure

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285	Back alignment and structure

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285	Back alignment and structure

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197	Back alignment and structure

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290	Back alignment and structure

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347	Back alignment and structure

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347	Back alignment and structure

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347	Back alignment and structure

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520	Back alignment and structure

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520	Back alignment and structure

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308	Back alignment and structure

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308	Back alignment and structure

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361	Back alignment and structure

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466	Back alignment and structure

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466	Back alignment and structure

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594	Back alignment and structure

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332	Back alignment and structure

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332	Back alignment and structure

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332	Back alignment and structure

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567	Back alignment and structure

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239	Back alignment and structure

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239	Back alignment and structure

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353	Back alignment and structure

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353	Back alignment and structure

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562	Back alignment and structure

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455	Back alignment and structure

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768	Back alignment and structure

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768	Back alignment and structure

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768	Back alignment and structure

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768	Back alignment and structure

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263	Back alignment and structure

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291	Back alignment and structure

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176	Back alignment and structure

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457	Back alignment and structure

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457	Back alignment and structure

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220	Back alignment and structure

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193	Back alignment and structure

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220	Back alignment and structure

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276	Back alignment and structure

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592	Back alignment and structure

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		703
3rgz_A		768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3vq2_A		606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
1ziw_A		680	TOLL-like receptor 3; innate immunity, immune syst	100.0
3rgz_A		768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3vq2_A		606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
3t6q_A		606	CD180 antigen; protein-protein complex, leucine ri	100.0
1ziw_A		680	TOLL-like receptor 3; innate immunity, immune syst	100.0
3t6q_A		606	CD180 antigen; protein-protein complex, leucine ri	100.0
2z81_A		549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
3j0a_A		844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
2z63_A		570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
2z63_A		570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
4eco_A		636	Uncharacterized protein; leucine-rich repeats, pro	100.0
3j0a_A		844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
4ecn_A		876	Leucine-rich repeat protein; leucine-rich repeats,	99.98
2z7x_B		520	TOLL-like receptor 1, variable lymphocyte recepto;	99.98
2z7x_B		520	TOLL-like receptor 1, variable lymphocyte recepto;	99.97
4eco_A		636	Uncharacterized protein; leucine-rich repeats, pro	99.97
2z81_A		549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.97
4ecn_A		876	Leucine-rich repeat protein; leucine-rich repeats,	99.97
3a79_B		562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.97
3a79_B		562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.96
4g8a_A		635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.96
1jl5_A		454	Outer protein YOPM; leucine-rich repeat, molecular	99.96
1o6v_A		466	Internalin A; bacterial infection, extracellular r	99.96
4g8a_A		635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.95
3v47_A		455	TOLL-like receptor 5B and variable lymphocyte REC	99.95
1o6v_A		466	Internalin A; bacterial infection, extracellular r	99.95
3bz5_A		457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.95
1jl5_A		454	Outer protein YOPM; leucine-rich repeat, molecular	99.94
3v47_A		455	TOLL-like receptor 5B and variable lymphocyte REC	99.93
4fmz_A		347	Internalin; leucine rich repeat, structural genomi	99.93
3bz5_A		457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.93
2id5_A		477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.92
3o6n_A		390	APL1; leucine-rich repeat, protein binding; HET: N	99.92
3o6n_A		390	APL1; leucine-rich repeat, protein binding; HET: N	99.92
4fmz_A		347	Internalin; leucine rich repeat, structural genomi	99.92
3oja_B		597	Anopheles plasmodium-responsive leucine-rich REPE	99.92
2id5_A		477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.92
3oja_B		597	Anopheles plasmodium-responsive leucine-rich REPE	99.91
4fcg_A		328	Uncharacterized protein; structural genomics, PSI-	99.9
1xku_A		330	Decorin; proteoglycan, leucine-rich repeat, struct	99.89
2ft3_A		332	Biglycan; proteoglycan, dimer interface, structura	99.88
1xku_A		330	Decorin; proteoglycan, leucine-rich repeat, struct	99.86
2ft3_A		332	Biglycan; proteoglycan, dimer interface, structura	99.86
1ogq_A		313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.86
3g06_A		622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.84
4fcg_A		328	Uncharacterized protein; structural genomics, PSI-	99.83
3ogk_B		592	Coronatine-insensitive protein 1; leucine rich rep	99.83
2z80_A		353	TOLL-like receptor 2, variable lymphocyte recepto;	99.83
1ogq_A		313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.83
3ogk_B		592	Coronatine-insensitive protein 1; leucine rich rep	99.81
2z80_A		353	TOLL-like receptor 2, variable lymphocyte recepto;	99.8
1z7x_W		461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.8
3g06_A		622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.79
3zyi_A		452	Leucine-rich repeat-containing protein 4; cell adh	99.78
1z7x_W		461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.78
3zyi_A		452	Leucine-rich repeat-containing protein 4; cell adh	99.78
3zyj_A		440	Leucine-rich repeat-containing protein 4C; cell ad	99.78
3zyj_A		440	Leucine-rich repeat-containing protein 4C; cell ad	99.78
3o53_A		317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.77
1ozn_A		285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.77
2z66_A		306	Variable lymphocyte receptor B, TOLL-like recepto;	99.75
2p1m_B		594	Transport inhibitor response 1 protein; F-BOX, leu	99.75
2z66_A		306	Variable lymphocyte receptor B, TOLL-like recepto;	99.74
1wwl_A		312	Monocyte differentiation antigen CD14; LPS, immune	99.74
3oja_A		487	Leucine-rich immune molecule 1; coiled-coil, helix	99.74
3o53_A		317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.73
1ozn_A		285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.7
2p1m_B		594	Transport inhibitor response 1 protein; F-BOX, leu	99.69
4ay9_X		350	Follicle-stimulating hormone receptor; hormone-rec	99.68
1wwl_A		312	Monocyte differentiation antigen CD14; LPS, immune	99.66
1p9a_G		290	Platelet glycoprotein IB alpha chain precursor; pl	99.66
4ay9_X		350	Follicle-stimulating hormone receptor; hormone-rec	99.65
2z62_A		276	TOLL-like receptor 4, variable lymphocyte recepto;	99.65
2o6q_A		270	Variable lymphocyte receptor A; leucine-rich repea	99.65
3oja_A		487	Leucine-rich immune molecule 1; coiled-coil, helix	99.65
2z62_A		276	TOLL-like receptor 4, variable lymphocyte recepto;	99.64
2xwt_C		239	Thyrotropin receptor; signaling protein-immune sys	99.63
2xwt_C		239	Thyrotropin receptor; signaling protein-immune sys	99.63
3rfs_A		272	Internalin B, repeat modules, variable lymphocyte	99.63
1h6u_A		308	Internalin H; cell adhesion, leucine rich repeat,	99.63
1p9a_G		290	Platelet glycoprotein IB alpha chain precursor; pl	99.63
2o6q_A		270	Variable lymphocyte receptor A; leucine-rich repea	99.62
3rfs_A		272	Internalin B, repeat modules, variable lymphocyte	99.58
4glp_A		310	Monocyte differentiation antigen CD14; alpha beta	99.57
3m19_A		251	Variable lymphocyte receptor A diversity region; a	99.55
2a5y_B		549	CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis	99.54
1h6u_A		308	Internalin H; cell adhesion, leucine rich repeat,	99.54
1h6t_A		291	Internalin B; cell adhesion, leucine rich repeat,	99.53
2ast_B		336	S-phase kinase-associated protein 2; SCF-substrate	99.48
4glp_A		310	Monocyte differentiation antigen CD14; alpha beta	99.48
4ezg_A		197	Putative uncharacterized protein; internalin-A, le	99.48
2ca6_A		386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.48
3m19_A		251	Variable lymphocyte receptor A diversity region; a	99.47
1m9s_A		605	Internalin B; cell invasion, GW domains, SH3 domai	99.46
2ast_B		336	S-phase kinase-associated protein 2; SCF-substrate	99.46
1h6t_A		291	Internalin B; cell adhesion, leucine rich repeat,	99.44
1xeu_A		263	Internalin C; cellular invasion, leucine-rich repe	99.44
4ezg_A		197	Putative uncharacterized protein; internalin-A, le	99.42
2ca6_A		386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.41
3cvr_A		571	Invasion plasmid antigen; leucine rich repeat and	99.4
3goz_A		362	Leucine-rich repeat-containing protein; LEGL7, NES	99.38
3e6j_A		229	Variable lymphocyte receptor diversity region; var	99.38
1m9s_A		605	Internalin B; cell invasion, GW domains, SH3 domai	99.37
2v9t_B		220	SLIT homolog 2 protein N-product; structural prote	99.37
3e6j_A		229	Variable lymphocyte receptor diversity region; var	99.36
2ell_A		168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.36
3cvr_A		571	Invasion plasmid antigen; leucine rich repeat and	99.36
3goz_A		362	Leucine-rich repeat-containing protein; LEGL7, NES	99.36
2o6s_A		208	Variable lymphocyte receptor B; leucine-rich repea	99.35
1xeu_A		263	Internalin C; cellular invasion, leucine-rich repe	99.35
2v9t_B		220	SLIT homolog 2 protein N-product; structural prote	99.33
2v70_A		220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.32
2je0_A		149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.32
2o6s_A		208	Variable lymphocyte receptor B; leucine-rich repea	99.31
2xot_A		361	Amphoterin-induced protein 1; cell adhesion, neuro	99.3
4b8c_D		727	Glucose-repressible alcohol dehydrogenase transcr	99.28
1a9n_A		176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.28
2v70_A		220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.27
2ell_A		168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.23
2je0_A		149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.23
2xot_A		361	Amphoterin-induced protein 1; cell adhesion, neuro	99.2
1w8a_A		192	SLIT protein; signaling protein, secreted protein,	99.2
1a9n_A		176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.17
1dce_A		567	Protein (RAB geranylgeranyltransferase alpha subun	99.16
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	99.16
1dce_A		567	Protein (RAB geranylgeranyltransferase alpha subun	99.15
2wfh_A		193	SLIT homolog 2 protein C-product; developmental pr	99.14
4b8c_D		727	Glucose-repressible alcohol dehydrogenase transcr	99.14
2wfh_A		193	SLIT homolog 2 protein C-product; developmental pr	99.13
1w8a_A		192	SLIT protein; signaling protein, secreted protein,	99.11
2r9u_A		174	Variable lymphocyte receptor; adaptive immunity, V	99.1
3g39_A		170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.05
2o6r_A		177	Variable lymphocyte receptor B; leucine-rich repea	99.02
3sfz_A		1249	APAF-1, apoptotic peptidase activating factor 1; a	99.01
2o6r_A		177	Variable lymphocyte receptor B; leucine-rich repea	99.0
1ds9_A		198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.99
1ds9_A		198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.98
3sb4_A		329	Hypothetical leucine rich repeat protein; LRR, rig	98.97
2r9u_A		174	Variable lymphocyte receptor; adaptive immunity, V	98.96
3sb4_A		329	Hypothetical leucine rich repeat protein; LRR, rig	98.92
3g39_A		170	Variable lymphocyte receptor VLRB.2D; antibody, X-	98.92
1z6t_A		591	APAF-1, apoptotic protease activating factor 1; ca	98.73
4fdw_A		401	Leucine rich hypothetical protein; putative cell s	98.72
2ifg_A		347	High affinity nerve growth factor receptor; TRK, T	98.66
4fs7_A		394	Uncharacterized protein; leucine-rich repeats, pro	98.64
4fdw_A		401	Leucine rich hypothetical protein; putative cell s	98.6
2ifg_A		347	High affinity nerve growth factor receptor; TRK, T	98.57
4fs7_A		394	Uncharacterized protein; leucine-rich repeats, pro	98.54
3e4g_A		176	ATP synthase subunit S, mitochondrial; leucine-ric	98.22
3un9_A		372	NLR family member X1; leucine rich repeat (LRR), a	98.01
3un9_A		372	NLR family member X1; leucine rich repeat (LRR), a	97.96
2ra8_A		362	Uncharacterized protein Q64V53_bacfr; WGR domain,	97.92
3e4g_A		176	ATP synthase subunit S, mitochondrial; leucine-ric	97.91
1io0_A		185	Tropomodulin; LRR protein, right-handed super-heli	97.84
2ra8_A		362	Uncharacterized protein Q64V53_bacfr; WGR domain,	97.82
3rw6_A		267	Nuclear RNA export factor 1; retroviral constituti	97.8
4gt6_A		394	Cell surface protein; leucine rich repeats, putati	97.78
3rw6_A		267	Nuclear RNA export factor 1; retroviral constituti	97.77
4gt6_A		394	Cell surface protein; leucine rich repeats, putati	97.77
1io0_A		185	Tropomodulin; LRR protein, right-handed super-heli	97.71
4h09_A		379	Hypothetical leucine rich repeat protein; two LRR_	97.43
4h09_A		379	Hypothetical leucine rich repeat protein; two LRR_	97.13
3rfe_A		130	Platelet glycoprotein IB beta chain; platelet surf	96.01
3rfe_A		130	Platelet glycoprotein IB beta chain; platelet surf	95.12
1pgv_A		197	TMD-1, tropomodulin TMD-1; structural genomics, PS	92.55
1pgv_A		197	TMD-1, tropomodulin TMD-1; structural genomics, PS	91.46

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*	Back alignment and structure

Probab=100.00  E-value=8.5e-39  Score=363.74  Aligned_cols=509  Identities=18%  Similarity=0.152  Sum_probs=287.4

Q ss_pred             CCceEEEEEEcCccCc-ccccccccCCCceeEeeeccCCCCcccchhhhhhhhcCCCcccEEecCCCCCCccC-cc---c
Q 046587          136 FERIRHASYTRGRYDG-KNKFKVFNEIEHLRTFLPLHERRGYYIPRTVLSDLLPKFRRLRMLSLQGYCIGELP-MS---F  210 (703)
Q Consensus       136 ~~~~r~l~~~~~~~~~-~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp-~~---i  210 (703)
                      ...++++.+..+.... ......+..+++|+.|.+.++.    +....+...+.++++|++|++++|.+...+ ..   +
T Consensus        99 l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~----l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~  174 (768)
T 3rgz_A           99 SASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNT----LDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLS  174 (768)
T ss_dssp             CTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSE----EECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHT
T ss_pred             CCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCc----cCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhh
Confidence            3456666665554321 1111256677777777776553    111112222355666666676666664442 22   4


Q ss_pred             cCCCcCceEeccCCCCccccccccccccCcEEecCCCCCCcccCccccCCCcccEEeecCccccccCCccCCCCCCCccc
Q 046587          211 EDLRLLRLLNLADTDIRSLPESTCTLLNLEILILRNCSRLIKLPPKMRNLINLRHLDIRGAKLLKEMPFGMKELKNLQTL  290 (703)
Q Consensus       211 ~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L  290 (703)
                      +++++|++|++++|.+....+ ++.+++|++|++++|.....+|. ++++++|++|++++|.....+|..++.+++|++|
T Consensus       175 ~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L  252 (768)
T 3rgz_A          175 DGCGELKHLAISGNKISGDVD-VSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLL  252 (768)
T ss_dssp             TCCTTCCEEECCSSEEESCCB-CTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEE
T ss_pred             ccCCCCCEEECCCCcccccCC-cccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEE
Confidence            556666666666665553322 25566666666666533333444 6666666666666665444555556666666666


Q ss_pred             CeeEeecCCCCCChhhhhhhhccCC---------------------ceEEeCccccCChhchhhhhcccccccccceEEc
Q 046587          291 SNFIVGKGETASGLEDLKCLNFLCD---------------------ELCMSGLENVNNPQNAREATVCEKHNLEALTLDW  349 (703)
Q Consensus       291 ~~~~~~~~~~~~~~~~L~~L~~L~~---------------------~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~  349 (703)
                      ++..+......... .+++|+.+..                     .+.+.    .+......+..+..+++|+.|+++.
T Consensus       253 ~Ls~n~l~~~~~~~-~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls----~n~l~~~~p~~~~~l~~L~~L~L~~  327 (768)
T 3rgz_A          253 NISSNQFVGPIPPL-PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLS----GNHFYGAVPPFFGSCSLLESLALSS  327 (768)
T ss_dssp             ECCSSCCEESCCCC-CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECC----SSEEEECCCGGGGGCTTCCEEECCS
T ss_pred             ECCCCcccCccCcc-ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECc----CCcCCCccchHHhcCCCccEEECCC
Confidence            55443322110111 2222222210                     00000    0011112233344445555555543


Q ss_pred             cCCCCCCCCchhhHhhhhcCCCCCCcceEEEeccCCC-CCCcccCCCCCC-CccEEEEeccCCCCcCC-CCCC--cCccc
Q 046587          350 GSQFDNSRDGVVEEHVLEILQPHKCIKKVAIRNYGGA-RFPHWIGDPSFS-KMKVLKLENCHNCVSLP-SLGL--LSSLK  424 (703)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~~p~~~~~~~~~-~L~~L~l~~~~~~~~l~-~l~~--l~~L~  424 (703)
                      +...     +..   ....+..+++|+.|+++++... .+|.++..  ++ +|+.|++++|...+..| .+..  +++|+
T Consensus       328 n~l~-----~~i---p~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~--l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~  397 (768)
T 3rgz_A          328 NNFS-----GEL---PMDTLLKMRGLKVLDLSFNEFSGELPESLTN--LSASLLTLDLSSNNFSGPILPNLCQNPKNTLQ  397 (768)
T ss_dssp             SEEE-----EEC---CHHHHTTCTTCCEEECCSSEEEECCCTTHHH--HTTTCSEEECCSSEEEEECCTTTTCSTTCCCC
T ss_pred             Cccc-----CcC---CHHHHhcCCCCCEEeCcCCccCccccHHHHh--hhcCCcEEEccCCCcCCCcChhhhhcccCCcc
Confidence            3200     000   0111334555555555555443 44444433  33 55555555555443333 2322  45566


Q ss_pred             eeeecccccceeecccccCCCcccCCCccceeceeeccCCCcccCCCC---CCCCccEEEEecCCCccccceeeEEEcCC
Q 046587          425 HLAVKGLKKLKSIESEVYGEGFSMPFPSLEILKPSIAECPKLSGQLPE---LLPSLETLVVSKCKKLFIRAEWMLYIRDR  501 (703)
Q Consensus       425 ~L~l~~~~~l~~~~~~~~~~~~~~~f~~L~~L~l~~~~~~~l~~~~~~---~l~~L~~L~l~~~~~l~~~~~~~~~i~~~  501 (703)
                      +|++++|.....++..+..      +++|+.|+++.+..   .+.+|.   .+++|+.|++++|....            
T Consensus       398 ~L~L~~n~l~~~~p~~l~~------l~~L~~L~Ls~N~l---~~~~p~~l~~l~~L~~L~L~~n~l~~------------  456 (768)
T 3rgz_A          398 ELYLQNNGFTGKIPPTLSN------CSELVSLHLSFNYL---SGTIPSSLGSLSKLRDLKLWLNMLEG------------  456 (768)
T ss_dssp             EEECCSSEEEEECCGGGGG------CTTCCEEECCSSEE---ESCCCGGGGGCTTCCEEECCSSCCCS------------
T ss_pred             EEECCCCccccccCHHHhc------CCCCCEEECcCCcc---cCcccHHHhcCCCCCEEECCCCcccC------------
Confidence            6666555444344333322      55555554433322   222232   34566666666654110            


Q ss_pred             CccccccccCCCCCccEEEEecCcccccccccccccCCCCCCCCCCCCcccccEEEEecCCCCccccccccccCCccEEE
Q 046587          502 DCLTFIARRRLPASLKRLEIENCEKLQRLFDDEEDASSSSPSPASSSSPVMLQHLSIENCPELTSLSSGVQFLEALEFLE  581 (703)
Q Consensus       502 ~~l~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~  581 (703)
                               .+|..     +.++++|+.++++.|.+.+..+.  .+..+++|++|++++|...+.+|..++.+++|++|+
T Consensus       457 ---------~~p~~-----~~~l~~L~~L~L~~N~l~~~~p~--~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~  520 (768)
T 3rgz_A          457 ---------EIPQE-----LMYVKTLETLILDFNDLTGEIPS--GLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILK  520 (768)
T ss_dssp             ---------CCCGG-----GGGCTTCCEEECCSSCCCSCCCG--GGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEE
T ss_pred             ---------cCCHH-----HcCCCCceEEEecCCcccCcCCH--HHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEE
Confidence                     11111     22345566666666666544333  566777788888888887778888887888888888


Q ss_pred             eecCcCcccccccCCCCCCCcEEEecCCCCCCccCCC-------------------------------------------
Q 046587          582 IRDCPELESILDGLPNLKCLQSIYIWKCPSLVSFPER-------------------------------------------  618 (703)
Q Consensus       582 l~~c~~l~~~p~~~~~l~~L~~L~l~~c~~l~~~~~~-------------------------------------------  618 (703)
                      +++|.....+|..+..+++|+.|++++|+....+|..                                           
T Consensus       521 L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  600 (768)
T 3rgz_A          521 LSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIR  600 (768)
T ss_dssp             CCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCC
T ss_pred             CCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccccccccccccccccccccc
Confidence            8888777788888888888888888888654344320                                           


Q ss_pred             ----------------------------CCCCCccEEEeccCCCCcccccccCCCCCcceEeeccCCCcccCCCC-CCCC
Q 046587          619 ----------------------------GLPNTISRVGIGECDKLEALPNDLHKINSLRYLSIQLCRNLVSFPEE-GFPT  669 (703)
Q Consensus       619 ----------------------------~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~~  669 (703)
                                                  ...++|+.|++++|.....+|..+.++++|+.|++++|.--+.+|.. +.++
T Consensus       601 ~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~  680 (768)
T 3rgz_A          601 SEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLR  680 (768)
T ss_dssp             GGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCT
T ss_pred             chhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCC
Confidence                                        11357899999998777789999999999999999999555577765 4578


Q ss_pred             CcCeEEEecCCCCccccccCcCCCCceeeEEecC
Q 046587          670 SLTSLRIGDFKMYKTLVQWGLHRLTSLGRLYIVD  703 (703)
Q Consensus       670 ~L~~L~i~~c~~l~~~~~~~l~~l~~L~~L~l~~  703 (703)
                      +|+.|++++|.....+|.. +.++++|++|++++
T Consensus       681 ~L~~LdLs~N~l~g~ip~~-l~~l~~L~~L~ls~  713 (768)
T 3rgz_A          681 GLNILDLSSNKLDGRIPQA-MSALTMLTEIDLSN  713 (768)
T ss_dssp             TCCEEECCSSCCEECCCGG-GGGCCCCSEEECCS
T ss_pred             CCCEEECCCCcccCcCChH-HhCCCCCCEEECcC
Confidence            9999999998877788876 89999999999874

PyMOL of 3rgz

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*	Back alignment and structure

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*	Back alignment and structure

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*	Back alignment and structure

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*	Back alignment and structure

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*	Back alignment and structure

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*	Back alignment and structure

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*	Back alignment and structure

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*	Back alignment and structure

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}	Back alignment and structure

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}	Back alignment and structure

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}	Back alignment and structure

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}	Back alignment and structure

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}	Back alignment and structure

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}	Back alignment and structure

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}	Back alignment and structure

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}	Back alignment and structure

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}	Back alignment and structure

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*	Back alignment and structure

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}	Back alignment and structure

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}	Back alignment and structure

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}	Back alignment and structure

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*	Back alignment and structure

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A	Back alignment and structure

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A	Back alignment and structure

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*	Back alignment and structure

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*	Back alignment and structure

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A	Back alignment and structure

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}	Back alignment and structure

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A	Back alignment and structure

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*	Back alignment and structure

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}	Back alignment and structure

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}	Back alignment and structure

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}	Back alignment and structure

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}	Back alignment and structure

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}	Back alignment and structure

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}	Back alignment and structure

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}	Back alignment and structure

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}	Back alignment and structure

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}	Back alignment and structure

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}	Back alignment and structure

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*	Back alignment and structure

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}	Back alignment and structure

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*	Back alignment and structure

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}	Back alignment and structure

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8	Back alignment and structure

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}	Back alignment and structure

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}	Back alignment and structure

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*	Back alignment and structure

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}	Back alignment and structure

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8	Back alignment and structure

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*	Back alignment and structure

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}	Back alignment and structure

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I	Back alignment and structure

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}	Back alignment and structure

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A	Back alignment and structure

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I	Back alignment and structure

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A	Back alignment and structure

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}	Back alignment and structure

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}	Back alignment and structure

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}	Back alignment and structure

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*	Back alignment and structure

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}	Back alignment and structure

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*	Back alignment and structure

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}	Back alignment and structure

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}	Back alignment and structure

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}	Back alignment and structure

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}	Back alignment and structure

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*	Back alignment and structure

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*	Back alignment and structure

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*	Back alignment and structure

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}	Back alignment and structure

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A	Back alignment and structure

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*	Back alignment and structure

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*	Back alignment and structure

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}	Back alignment and structure

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}	Back alignment and structure

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*	Back alignment and structure

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*	Back alignment and structure

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*	Back alignment and structure

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A	Back alignment and structure

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1	Back alignment and structure

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A	Back alignment and structure

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}	Back alignment and structure

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A	Back alignment and structure

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}	Back alignment and structure

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A	Back alignment and structure

>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*	Back alignment and structure

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1	Back alignment and structure

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A	Back alignment and structure

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A	Back alignment and structure

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}	Back alignment and structure

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}	Back alignment and structure

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A	Back alignment and structure

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A	Back alignment and structure

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A	Back alignment and structure

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A	Back alignment and structure

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A	Back alignment and structure

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}	Back alignment and structure

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}	Back alignment and structure

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A	Back alignment and structure

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}	Back alignment and structure

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}	Back alignment and structure

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}	Back alignment and structure

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A	Back alignment and structure

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A	Back alignment and structure

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}	Back alignment and structure

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A	Back alignment and structure

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}	Back alignment and structure

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}	Back alignment and structure

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}	Back alignment and structure

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}	Back alignment and structure

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A	Back alignment and structure

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}	Back alignment and structure

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A	Back alignment and structure

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}	Back alignment and structure

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}	Back alignment and structure

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}	Back alignment and structure

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4	Back alignment and structure

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}	Back alignment and structure

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A	Back alignment and structure

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A	Back alignment and structure

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}	Back alignment and structure

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7	Back alignment and structure

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4	Back alignment and structure

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*	Back alignment and structure

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*	Back alignment and structure

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}	Back alignment and structure

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}	Back alignment and structure

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}	Back alignment and structure

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7	Back alignment and structure

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}	Back alignment and structure

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D	Back alignment and structure

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}	Back alignment and structure

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*	Back alignment and structure

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}	Back alignment and structure

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A	Back alignment and structure

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A	Back alignment and structure

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}	Back alignment and structure

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}	Back alignment and structure

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}	Back alignment and structure

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D	Back alignment and structure

>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}	Back alignment and structure

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A	Back alignment and structure

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7	Back alignment and structure

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}	Back alignment and structure

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A	Back alignment and structure

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7	Back alignment and structure

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}	Back alignment and structure

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A	Back alignment and structure

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}	Back alignment and structure

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}	Back alignment and structure

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}	Back alignment and structure

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A	Back alignment and structure

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1	Back alignment and structure

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}	Back alignment and structure

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A	Back alignment and structure

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}	Back alignment and structure

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A	Back alignment and structure

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}	Back alignment and structure

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1	Back alignment and structure

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}	Back alignment and structure

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}	Back alignment and structure

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*	Back alignment and structure

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*	Back alignment and structure

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1	Back alignment and structure

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		703
d2astb2		284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	7e-06
d2omza2		384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	7e-05
d2omza2		384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	0.002
d2a5yb3		277	c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenor	9e-05
d1jl5a_		353	c.10.2.6 (A:) Leucine rich effector protein YopM {	5e-04
d1jl5a_		353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.002
d1koha1		162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	0.003
d1xkua_		305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	0.004

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284	Back information, alignment and structure


class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.9 bits (107), Expect = 7e-06
 Identities = 27/228 (11%), Positives = 73/228 (32%), Gaps = 11/228 (4%)

Query: 214 RLLRLLNLADTDIRSLPESTCTLLNLEILILRNCSRLIK-LPPKMRNLINLRHLDIRGAK 272
           + +       + +        +   ++ + L N    +  L   +     L++L + G +
Sbjct: 23  QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLR 82

Query: 273 LLKEMPFGMKELKNLQTLSNFIVGKGETASGLEDLKCLNFLCDELCMSGLENVNNPQNAR 332
           L   +   + +  NL  L+          +    L   + L +       +         
Sbjct: 83  LSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVA 142

Query: 333 EATVCEKHNLEALTLDWGSQFDNSRDGVVEEHVLEILQPHKCIKKVAIRNYGGARFPHWI 392
            A V E                  R  + +  +  +++    +  + + +    +   + 
Sbjct: 143 VAHVSETI--------TQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQ 194

Query: 393 GDPSFSKMKVLKLENCHNC--VSLPSLGLLSSLKHLAVKGLKKLKSIE 438
                + ++ L L  C++    +L  LG + +LK L V G+    +++
Sbjct: 195 EFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQ 242

PyMOL of d2astb2

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384	Back information, alignment and structure

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384	Back information, alignment and structure

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} Length = 277	Back information, alignment and structure

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353	Back information, alignment and structure

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353	Back information, alignment and structure

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162	Back information, alignment and structure

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		703
d2omza2		384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.87
d2omza2		384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.83
d1xkua_		305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.81
d1ogqa_		313	Polygalacturonase inhibiting protein PGIP {Kidney	99.78
d1jl5a_		353	Leucine rich effector protein YopM {Yersinia pesti	99.74
d1ogqa_		313	Polygalacturonase inhibiting protein PGIP {Kidney	99.71
d1xkua_		305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.69
d1p9ag_		266	von Willebrand factor binding domain of glycoprote	99.66
d1jl5a_		353	Leucine rich effector protein YopM {Yersinia pesti	99.64
d1p9ag_		266	von Willebrand factor binding domain of glycoprote	99.57
d1ozna_		284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.55
d1ozna_		284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.51
d1h6ta2		210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.47
d2omxa2		199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.47
d1h6ua2		227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.47
d1h6ua2		227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.39
d1h6ta2		210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.37
d1xwdc1		242	Follicle-stimulating hormone receptor {Human (Homo	99.36
d2omxa2		199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.35
d1dcea3		124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.34
d1xwdc1		242	Follicle-stimulating hormone receptor {Human (Homo	99.31
d1dcea3		124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.27
d1a9na_		162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.26
d2astb2		284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.2
d1a9na_		162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.19
d2astb2		284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.19
d1w8aa_		192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.03
d1z7xw1		460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.01
d1w8aa_		192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	98.98
d1m9la_		198	Outer arm dynein light chain 1 {Green algae (Chlam	98.95
d1z7xw1		460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.94
d1m9la_		198	Outer arm dynein light chain 1 {Green algae (Chlam	98.91
d2ifga3		156	High affinity nerve growth factor receptor, N-term	98.73
d2ifga3		156	High affinity nerve growth factor receptor, N-term	98.65
d2ca6a1		344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.4
d2ca6a1		344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.29
d1koha1		162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.96
d1koha1		162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.68
d1pgva_		167	Tropomodulin C-terminal domain {nematode (Caenorha	96.64
d1io0a_		166	Tropomodulin C-terminal domain {Chicken (Gallus ga	95.98
d1pgva_		167	Tropomodulin C-terminal domain {nematode (Caenorha	95.6
d1io0a_		166	Tropomodulin C-terminal domain {Chicken (Gallus ga	93.1

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}	Back information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.87  E-value=1.2e-21  Score=202.18  Aligned_cols=81  Identities=19%  Similarity=0.327  Sum_probs=69.4

Q ss_pred             CCCcccEEecCCCCCCccCccccCCCcCceEeccCCCCccccccccccccCcEEecCCCCCCcccCccccCCCcccEEee
Q 046587          189 KFRRLRMLSLQGYCIGELPMSFEDLRLLRLLNLADTDIRSLPESTCTLLNLEILILRNCSRLIKLPPKMRNLINLRHLDI  268 (703)
Q Consensus       189 ~l~~Lr~L~L~~~~l~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l  268 (703)
                      .+.+|++|+++++.++.+ +.++.+++|++|++++|.|+.+|. ++++++|++|++++| .+..+++ ++++++|+.|++
T Consensus        42 ~l~~l~~L~l~~~~I~~l-~gl~~L~nL~~L~Ls~N~l~~l~~-l~~L~~L~~L~L~~n-~i~~i~~-l~~l~~L~~L~~  117 (384)
T d2omza2          42 DLDQVTTLQADRLGIKSI-DGVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNN-QIADITP-LANLTNLTGLTL  117 (384)
T ss_dssp             HHTTCCEEECCSSCCCCC-TTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEEC
T ss_pred             HhCCCCEEECCCCCCCCc-cccccCCCCCEEeCcCCcCCCCcc-ccCCccccccccccc-ccccccc-cccccccccccc
Confidence            456799999999999887 468899999999999999999874 899999999999998 5666665 889999999999


Q ss_pred             cCccc
Q 046587          269 RGAKL  273 (703)
Q Consensus       269 ~~~~~  273 (703)
                      +++..
T Consensus       118 ~~~~~  122 (384)
T d2omza2         118 FNNQI  122 (384)
T ss_dssp             CSSCC
T ss_pred             ccccc
Confidence            88853

PyMOL of d2omza2

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}	Back information, alignment and structure

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}	Back information, alignment and structure

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}	Back information, alignment and structure

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}	Back information, alignment and structure

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}	Back information, alignment and structure

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}	Back information, alignment and structure

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}	Back information, alignment and structure

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}	Back information, alignment and structure

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}	Back information, alignment and structure

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}	Back information, alignment and structure

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}	Back information, alignment and structure

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}	Back information, alignment and structure

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}	Back information, alignment and structure

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}	Back information, alignment and structure

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}	Back information, alignment and structure

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}	Back information, alignment and structure

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}	Back information, alignment and structure

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}	Back information, alignment and structure

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}	Back information, alignment and structure

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}	Back information, alignment and structure

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}	Back information, alignment and structure

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}	Back information, alignment and structure

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}	Back information, alignment and structure

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}	Back information, alignment and structure

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}	Back information, alignment and structure