Citrus Sinensis ID: 046601

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230---
Protein Sequence
MGIFDRSLTVSVGSTLGSLSCCRSLQKTRLNLIQFWLFISSSFLLQTDESGKFLVGSNPVLSKDLLSHERNSLPSLNGRSDLLKLEHALIAENLWSFLEKLGACYSVIPCHIYRIWHDEVSCFVPFLHVTKSKPLEVRSPLGIHVLMTNGILTAGVLKLCYQIKATMEHTLIPAVDALNRKDVEGATNLLRRALQVLLARAVNIVILASNDILDLLPPDDPLFNKCIDPMDAL
Secondary Structure (PSIPRED)
cccccccEEEEccccccHHHHHHHcccccEEEEccccHHHHHHHHHHcccccEEEcccccccccccccccccccccccccccccccHHHHHHHHHHHHHHccccEEEEccHHHHHHHHHHHcccccccccccccccccccccEEEEccHHHHHHHHHHHHcccccccccccHHHHHHHHcccHHHHHHHHHHHHHHHHHccccEEEEcccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccEcccEEEEccccHccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccEEEEccHHHHHHHcccccccccccccccHHcccccHHHHHHHHHHHHHccccEEEEEccHHHHHHHHHcccccEEEEEEccHHHcccccEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccEEEEEcccHHHHcccccHHHHHcccHHHcc
Coil and Loop (DISEMBL)
mgifdrsltvsvgstlgslsCCRSLQKTRLNLIQFWLFISSsfllqtdesgkflvgsnpvlskdllshernslpslngrsDLLKLEHALIAENLWSFLEKLgacysvipchiyriwhdevscfvpflhvtkskplevrsplgiHVLMTNGILTAGVLKLCYQIKATMEhtlipavdalnrkDVEGATNLLRRALQVLLARAVNIVILAsndildllppddplfnkcidpmdal
Flexible Loop (DISEMBL)
mgifdrsltvsvgstlgsLSCCRSLQKTRLNLIQFWLFISSSFLLQTDESGKFLVGSNPVLSKDLLSHERNSLPSLNGRSDLLKLEHALIAENLWSFLEKLGACYSVIPCHIYRIWHDEVSCFVPFLHVTKSKPLEVRSPLGIHVLMTNGILTAGVLKLCYQIKATMEHTLIPAVDALNRKDVEGATNLLRRALQVLLARAVNIVILASndildllppddplfnkcidPMDAL
Low Complexity Region (SEG)
MGIFDRSLTVSVGSTLGSLSCCRSLQKTRLNLIQFWLFISSSFLLQTDESGKFLVGSNPVLSKDLLSHERNSLPSLNGRSDLLKLEHALIAENLWSFLEKLGACYSVIPCHIYRIWHDEVSCFVPFLHVTKSKPLEVRSPLGIHVLMTNGILTAGVLKLCYQIKATMEHTLIPAVDALNRKDVEGATNllrralqvllaravNIVILASNDIldllppddplFNKCIDPMDAL
Disordered region (IsUnstruct)
******SLTVSVGSTLGSLSCCRSLQKTRLNLIQFWLFISSSFLLQTDESGKFLVGSNPVL*******************DLLKLEHALIAENLWSFLEKLGACYSVIPCHIYRIWHDEVSCFVPFLHVTKSKPLEVRSPLGIHVLMTNGILTAGVLKLCYQIKATMEHTLIPAVDALNRKDVEGATNLLRRALQVLLARAVNIVILASNDILDLLPPDDPLFNKCI******
Disordered Region (DISOPRED)
*****RSLTVSVGSTLG*********KTRLNLIQFWLFISSSFLLQTDESGKFLVGSNPVLSKDLLSHERNSLPS*********LEHALIAENLWSFLEKLGACYSVIPCHIYRIWHDEVSCFVPFLHVTKSKPLEVRSPLGIHVLMTNGILTAGVLKLCYQIKATMEHTLIPAVDALNRKDVEGATNLLRRALQVLLARAVNIVILASNDILDLLPPDDPLFNKCIDPMDAL
Disordered Region (DISEMBL)
MGIFDRSLTVSVGSTLGSLSCCRSLQKTRLNLIQFWLFISSSFLLQTDESGKFLVGSNPVLSKDLLSHERNSLPSLNGRSDLLKLEHALIAENLWSFLEKLGACYSVIPCHIYRIWHDEVSCFVPFLHVTKSKPLEVRSPLGIHVLMTNGILTAGVLKLCYQIKATMEHTLIPAVDALNRKDVEGATNLLRRALQVLLARAVNIVILASNDILDLLPPDDPLFNKCIDPMDAL
Disordered Region (DISPRO)
**IFDRSLTVSVGSTLGSLSCCRSLQKTRLNLIQFWLFISSSFLLQTDESGKFLVGSNPVLSKDLLSHERNSLPSLNGRSDLLKLEHALIAENLWSFLEKLGACYSVIPCHIYRIWHDEVSCFVPFLHVTKSKPLEVRSPLGIHVLMTNGILTAGVLKLCYQIKATMEHTLIPAVDALNRKDVEGATNLLRRALQVLLARAVNIVILASNDILDLLPPDDPLFNKCIDPM***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGIFDRSLTVSVGSTLGSLSCCRSLQKTRLNLIQFWLFISSSFLLQTDESGKFLVGSNPVLSKDLLSHERNSLPSLNGRSDLLKLEHALIAENLWSFLEKLGACYSVIPCHIYRIWHDEVSCFVPFLHVTKSKPLEVRSPLGIHVLMTNGILTAGVLKLCYQIKATMEHTLIPAVDALNRKDVEGATNLLRRALQVLLARAVNIVILASNDILDLLPPDDPLFNKCIDPMDAL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	233
255553111	330	racemase and epimerase, acting on amino	0.802	0.566	0.539	3e-48
147819141	330	hypothetical protein VITISV_015733 [Viti	0.776	0.548	0.541	1e-46
225442873	305	PREDICTED: uncharacterized protein LOC10	0.776	0.593	0.536	2e-46
297743412	443	unnamed protein product [Vitis vinifera]	0.793	0.417	0.531	3e-46
224070839	330	predicted protein [Populus trichocarpa]	0.776	0.548	0.531	2e-45
449469004	327	PREDICTED: uncharacterized protein LOC10	0.776	0.553	0.526	2e-43
110740155	330	hypothetical protein [Arabidopsis thalia	0.776	0.548	0.468	3e-40
15218160	330	aspartate-glutamate racemase-like protei	0.776	0.548	0.468	3e-40
87162592	321	Asp/Glu racemase [Medicago truncatula]	0.742	0.538	0.507	2e-39
357455147	318	Aspartate racemase [Medicago truncatula]	0.742	0.544	0.507	3e-39

>gi|255553111|ref|XP_002517598.1| racemase and epimerase, acting on amino acids and derivatives, putative [Ricinus communis] gi|223543230|gb|EEF44762.1| racemase and epimerase, acting on amino acids and derivatives, putative [Ricinus communis]

 Score =  197 bits (501), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 116/215 (53%), Positives = 140/215 (65%), Gaps = 28/215 (13%)

Query: 47  TDESGK----FLVGSNPVLSKDLLSHERNSLPSLNGRSDLLKLEHALIAENLWS---FLE 99
           + E GK    F++ S+PVL+K+LLSHER+  PS+  + +  KL+HA I ENL S   FLE
Sbjct: 101 SSEDGKDSLPFVLCSDPVLNKELLSHERDFFPSIGRQKEYSKLDHAQIVENLRSKRVFLE 160

Query: 100 KLGACYSVIPCHIYRIWHDEVS--CFVPFLHV----------TKSKPLEVRSPLGIHVLM 147
           + GA   V+PCHI   WH++VS  C + FLH+           K KPLE  SPL I VL 
Sbjct: 161 RSGARCIVMPCHISHSWHEQVSKGCSIHFLHMGECVARELKEAKLKPLEAGSPLRIGVLA 220

Query: 148 TNGILTAGVLKLCYQI---------KATMEHTLIPAVDALNRKDVEGATNLLRRALQVLL 198
            N  LTAG  +   Q          KATMEHT+IPA+ ALNRKD+EGA NLLR ALQVLL
Sbjct: 221 ANATLTAGFYQEKLQSEGFEVVLPDKATMEHTIIPAIGALNRKDMEGARNLLRIALQVLL 280

Query: 199 ARAVNIVILASNDILDLLPPDDPLFNKCIDPMDAL 233
            RAVN VILAS+D+ DLLP +DPL  KCIDPMDAL
Sbjct: 281 VRAVNTVILASDDMRDLLPQNDPLLKKCIDPMDAL 315

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147819141|emb|CAN68957.1| hypothetical protein VITISV_015733 [Vitis vinifera]

 Score =  192 bits (488), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 111/205 (54%), Positives = 134/205 (65%), Gaps = 24/205 (11%)

Query: 53  FLVGSNPVLSKDLLSHERNSLPSLNGRSDLLKLEHALIAENLWS---FLEKLGACYSVIP 109
           F++ S+PVL+K LLSHER+  P L+ + +  +++H  I  NL S   FLE+ G    V+P
Sbjct: 111 FVLCSDPVLNKQLLSHERSHFPLLSTKRESSRMDHTPIVGNLQSKRAFLERSGVQCIVMP 170

Query: 110 CHIYRIWHDEVS--CFVPFLHV----------TKSKPLEVRSPLGIHVLMTNGILTAGVL 157
           CHI   WHDE+S    VPFLH+           K KPLE  SPL I VL TN  LTAG  
Sbjct: 171 CHISHSWHDEISRGXSVPFLHMGECVARELKNAKLKPLEAGSPLRIGVLATNATLTAGFY 230

Query: 158 KLCYQI---------KATMEHTLIPAVDALNRKDVEGATNLLRRALQVLLARAVNIVILA 208
           +   Q          KATMEHT+IPA++ALNRKD+EGA NLLR ALQVLL RAVN VILA
Sbjct: 231 QEKLQREGFEVVLPDKATMEHTVIPAIEALNRKDMEGARNLLRIALQVLLVRAVNTVILA 290

Query: 209 SNDILDLLPPDDPLFNKCIDPMDAL 233
           S+D+ DLLP DDPL  KC+DPMDAL
Sbjct: 291 SDDMHDLLPRDDPLLKKCVDPMDAL 315

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225442873|ref|XP_002281753.1| PREDICTED: uncharacterized protein LOC100249822 [Vitis vinifera]

 Score =  191 bits (485), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 110/205 (53%), Positives = 133/205 (64%), Gaps = 24/205 (11%)

Query: 53  FLVGSNPVLSKDLLSHERNSLPSLNGRSDLLKLEHALIAENLWS---FLEKLGACYSVIP 109
           F++ S+PVL+K LLSHER+  P L+ + +  +++H  I  NL S   FLE+ G    V+P
Sbjct: 84  FVLCSDPVLNKQLLSHERSHFPLLSTKRESSRMDHTPIVGNLQSKRAFLERSGVQCIVMP 143

Query: 110 CHIYRIWHDEVS--CFVPFLHV----------TKSKPLEVRSPLGIHVLMTNGILTAGVL 157
           CHI   WHDE+S    VPFLH+           K KPLE  SPL I VL TN  LTAG  
Sbjct: 144 CHISHSWHDEISRGSSVPFLHMGECVARELKNAKLKPLEAGSPLRIGVLATNATLTAGFY 203

Query: 158 KLCYQI---------KATMEHTLIPAVDALNRKDVEGATNLLRRALQVLLARAVNIVILA 208
           +   Q          KATMEHT+IPA++A NRKD+EGA NLLR ALQVLL RAVN VILA
Sbjct: 204 QEKLQREGFEVVLPDKATMEHTVIPAIEAFNRKDMEGARNLLRIALQVLLVRAVNTVILA 263

Query: 209 SNDILDLLPPDDPLFNKCIDPMDAL 233
           S+D+ DLLP DDPL  KC+DPMDAL
Sbjct: 264 SDDMHDLLPRDDPLLKKCVDPMDAL 288

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297743412|emb|CBI36279.3| unnamed protein product [Vitis vinifera]

 Score =  190 bits (483), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 111/209 (53%), Positives = 135/209 (64%), Gaps = 24/209 (11%)

Query: 49  ESGKFLVGSNPVLSKDLLSHERNSLPSLNGRSDLLKLEHALIAENLWS---FLEKLGACY 105
           +S  F++ S+PVL+K LLSHER+  P L+ + +  +++H  I  NL S   FLE+ G   
Sbjct: 218 DSLPFVLCSDPVLNKQLLSHERSHFPLLSTKRESSRMDHTPIVGNLQSKRAFLERSGVQC 277

Query: 106 SVIPCHIYRIWHDEVS--CFVPFLHV----------TKSKPLEVRSPLGIHVLMTNGILT 153
            V+PCHI   WHDE+S    VPFLH+           K KPLE  SPL I VL TN  LT
Sbjct: 278 IVMPCHISHSWHDEISRGSSVPFLHMGECVARELKNAKLKPLEAGSPLRIGVLATNATLT 337

Query: 154 AGVLKLCYQI---------KATMEHTLIPAVDALNRKDVEGATNLLRRALQVLLARAVNI 204
           AG  +   Q          KATMEHT+IPA++A NRKD+EGA NLLR ALQVLL RAVN 
Sbjct: 338 AGFYQEKLQREGFEVVLPDKATMEHTVIPAIEAFNRKDMEGARNLLRIALQVLLVRAVNT 397

Query: 205 VILASNDILDLLPPDDPLFNKCIDPMDAL 233
           VILAS+D+ DLLP DDPL  KC+DPMDAL
Sbjct: 398 VILASDDMHDLLPRDDPLLKKCVDPMDAL 426

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224070839|ref|XP_002303258.1| predicted protein [Populus trichocarpa] gi|222840690|gb|EEE78237.1| predicted protein [Populus trichocarpa]

 Score =  188 bits (477), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 109/205 (53%), Positives = 133/205 (64%), Gaps = 24/205 (11%)

Query: 53  FLVGSNPVLSKDLLSHERNSLPSLNGRSDLLKLEHALIAENLWS---FLEKLGACYSVIP 109
           F++ S+PVL+K+LLSHERNS P     ++    +H+ IAENL +   FLEK G    V+P
Sbjct: 111 FVLCSDPVLNKELLSHERNSCPCPRRHNEKSPSDHSAIAENLQNKRVFLEKSGVQCIVMP 170

Query: 110 CHIYRIWHDEVS--CFVPFLHV----------TKSKPLEVRSPLGIHVLMTNGILTAGVL 157
           CHI   WHDEVS  C +PFLH+           K KPLE  SPL I +L +N  L AG  
Sbjct: 171 CHILHSWHDEVSKGCSLPFLHMGECVARELKEAKLKPLEAGSPLRIGLLASNATLAAGFY 230

Query: 158 KLCYQ---------IKATMEHTLIPAVDALNRKDVEGATNLLRRALQVLLARAVNIVILA 208
           +   Q          KATMEHT+IPA++AL+R D+EGA NLLR ALQVLL RAVN VILA
Sbjct: 231 QEKLQNEGFEVVLPDKATMEHTIIPAIEALDRNDMEGAQNLLRIALQVLLVRAVNTVILA 290

Query: 209 SNDILDLLPPDDPLFNKCIDPMDAL 233
           S ++ D+LP DDPL  KCIDPMDAL
Sbjct: 291 SEEMRDVLPEDDPLLKKCIDPMDAL 315

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449469004|ref|XP_004152211.1| PREDICTED: uncharacterized protein LOC101217164 [Cucumis sativus] gi|449532820|ref|XP_004173376.1| PREDICTED: uncharacterized protein LOC101225587 [Cucumis sativus]

 Score =  181 bits (458), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 108/205 (52%), Positives = 135/205 (65%), Gaps = 24/205 (11%)

Query: 53  FLVGSNPVLSKDLLSHERNSLPSLNGRSDLLKLEHALIAENLWS---FLEKLGACYSVIP 109
           F++ S+P LS +L   +++S P LN +S+ L L+  L+ E+L S   FLE  GA   V+P
Sbjct: 111 FVLCSDPTLSNELQVFDKSSHPVLNYKSEDLGLDSELVVESLKSKRTFLENSGARCIVMP 170

Query: 110 CHIYRIWHDEVS--CFVPFLHVT----------KSKPLEVRSPLGIHVLMTNGILTAGVL 157
           CHI  +W+++VS  C V FLH+           K KPLE  SPL I VL TN IL+AG  
Sbjct: 171 CHISHLWYEDVSKGCPVTFLHMADCVARELKEAKLKPLEAGSPLRIGVLATNAILSAGYY 230

Query: 158 KLCYQ---------IKATMEHTLIPAVDALNRKDVEGATNLLRRALQVLLARAVNIVILA 208
           +   Q          KATMEHT+IPA++ALNRKD+EGA NLLR ALQVLL RAVN VILA
Sbjct: 231 QEKLQNEGFEVVLPDKATMEHTVIPAIEALNRKDIEGARNLLRIALQVLLVRAVNSVILA 290

Query: 209 SNDILDLLPPDDPLFNKCIDPMDAL 233
           S+DI D+LP DDPL  +CIDPMDAL
Sbjct: 291 SDDIKDILPLDDPLLRRCIDPMDAL 315

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|110740155|dbj|BAF01976.1| hypothetical protein [Arabidopsis thaliana]

 Score =  171 bits (432), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 96/205 (46%), Positives = 132/205 (64%), Gaps = 24/205 (11%)

Query: 53  FLVGSNPVLSKDLLSHERNSLPSLNGRSDLLKLEHALIAENLWS---FLEKLGACYSVIP 109
           F++ S+P L+K+LL +E NS PSL  R +   ++  LI ENL +   +LE+ GA   ++P
Sbjct: 113 FVLCSDPALNKELLLYEENSYPSLYHREESTPVDPKLIVENLRNKRRYLERCGAKLILMP 172

Query: 110 CHIYRIWHDEV--SCFVPFLHV----------TKSKPLEVRSPLGIHVLMTNGILTAGVL 157
           CHI  IW++EV     VP LH+           K KPLE  +PL + V+ T+  L+AG  
Sbjct: 173 CHIAHIWYEEVCEGSLVPLLHMGECIAKELQEAKMKPLEAGNPLRVGVMATSATLSAGFY 232

Query: 158 KLCYQI---------KATMEHTLIPAVDALNRKDVEGATNLLRRALQVLLARAVNIVILA 208
           +   Q          KATMEHT+IP+++A+ RKD+EGA NLLR ALQVLL +AVN+V+L 
Sbjct: 233 QEKLQSNGFEAVPPDKATMEHTVIPSIEAMKRKDMEGARNLLRIALQVLLVQAVNVVMLG 292

Query: 209 SNDILDLLPPDDPLFNKCIDPMDAL 233
           S+++ DLLP DDPL  KC+DPMDAL
Sbjct: 293 SDEMRDLLPGDDPLLKKCVDPMDAL 317

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15218160|ref|NP_172993.1| aspartate-glutamate racemase-like protein [Arabidopsis thaliana] gi|5103839|gb|AAD39669.1|AC007591_34 Is a member of the PF|01177 Aspartate-glutamate racemase family. EST gb|T43554 comes from this gene [Arabidopsis thaliana] gi|26983862|gb|AAN86183.1| unknown protein [Arabidopsis thaliana] gi|332191198|gb|AEE29319.1| aspartate-glutamate racemase-like protein [Arabidopsis thaliana]

 Score =  171 bits (432), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 96/205 (46%), Positives = 132/205 (64%), Gaps = 24/205 (11%)

Query: 53  FLVGSNPVLSKDLLSHERNSLPSLNGRSDLLKLEHALIAENLWS---FLEKLGACYSVIP 109
           F++ S+P L+K+LL +E NS PSL  R +   ++  LI ENL +   +LE+ GA   ++P
Sbjct: 113 FVLCSDPALNKELLLYEENSYPSLYHREESTPVDPKLIVENLRNKRRYLERCGAKLILMP 172

Query: 110 CHIYRIWHDEV--SCFVPFLHV----------TKSKPLEVRSPLGIHVLMTNGILTAGVL 157
           CHI  IW++EV     VP LH+           K KPLE  +PL + V+ T+  L+AG  
Sbjct: 173 CHIAHIWYEEVCEGSLVPLLHMGECIAKELQEAKMKPLEAGNPLRVGVMATSATLSAGFY 232

Query: 158 KLCYQI---------KATMEHTLIPAVDALNRKDVEGATNLLRRALQVLLARAVNIVILA 208
           +   Q          KATMEHT+IP+++A+ RKD+EGA NLLR ALQVLL +AVN+V+L 
Sbjct: 233 QEKLQSNGFEAVLPDKATMEHTVIPSIEAMKRKDMEGARNLLRIALQVLLVQAVNVVMLG 292

Query: 209 SNDILDLLPPDDPLFNKCIDPMDAL 233
           S+++ DLLP DDPL  KC+DPMDAL
Sbjct: 293 SDEMRDLLPGDDPLLKKCVDPMDAL 317

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|87162592|gb|ABD28387.1| Asp/Glu racemase [Medicago truncatula]

 Score =  167 bits (424), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 104/205 (50%), Positives = 132/205 (64%), Gaps = 32/205 (15%)

Query: 53  FLVGSNPVLSKDLLSHERNSLPSLNGRSDLLKLEHALIAENLWS---FLEKLGACYSVIP 109
           FL+ S+P+L+K+LLS+ER SL S        K++ + I ++L +   FLE  GA   V+P
Sbjct: 110 FLLCSDPILNKELLSYER-SLESF-------KVDSSQIVQSLRNKRVFLENSGARCIVMP 161

Query: 110 CHIYRIWHDEVS--CFVPFLHVT----------KSKPLEVRSPLGIHVLMTNGILTAGVL 157
           C++   W+++VS  C VPFLH+           K KPLE  SPL I VL TN  L AG  
Sbjct: 162 CNVSHSWYEQVSIGCSVPFLHMAECVAKELKEAKLKPLEAGSPLRIGVLATNATLAAGFY 221

Query: 158 KLCYQ---------IKATMEHTLIPAVDALNRKDVEGATNLLRRALQVLLARAVNIVILA 208
           K   Q          +ATMEHT+IPA +AL+RKD+EGA NLLR ALQVLL RAVN VILA
Sbjct: 222 KEKLQNEGFEVILPDRATMEHTVIPATEALSRKDMEGACNLLRIALQVLLVRAVNFVILA 281

Query: 209 SNDILDLLPPDDPLFNKCIDPMDAL 233
           S+++ D+LP DDPL  KCIDPMDAL
Sbjct: 282 SDEMRDVLPHDDPLLKKCIDPMDAL 306

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357455147|ref|XP_003597854.1| Aspartate racemase [Medicago truncatula] gi|355486902|gb|AES68105.1| Aspartate racemase [Medicago truncatula]

 Score =  167 bits (423), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 104/205 (50%), Positives = 132/205 (64%), Gaps = 32/205 (15%)

Query: 53  FLVGSNPVLSKDLLSHERNSLPSLNGRSDLLKLEHALIAENLWS---FLEKLGACYSVIP 109
           FL+ S+P+L+K+LLS+ER SL S        K++ + I ++L +   FLE  GA   V+P
Sbjct: 107 FLLCSDPILNKELLSYER-SLESF-------KVDSSQIVQSLRNKRVFLENSGARCIVMP 158

Query: 110 CHIYRIWHDEVS--CFVPFLHVT----------KSKPLEVRSPLGIHVLMTNGILTAGVL 157
           C++   W+++VS  C VPFLH+           K KPLE  SPL I VL TN  L AG  
Sbjct: 159 CNVSHSWYEQVSIGCSVPFLHMAECVAKELKEAKLKPLEAGSPLRIGVLATNATLAAGFY 218

Query: 158 KLCYQ---------IKATMEHTLIPAVDALNRKDVEGATNLLRRALQVLLARAVNIVILA 208
           K   Q          +ATMEHT+IPA +AL+RKD+EGA NLLR ALQVLL RAVN VILA
Sbjct: 219 KEKLQNEGFEVILPDRATMEHTVIPATEALSRKDMEGACNLLRIALQVLLVRAVNFVILA 278

Query: 209 SNDILDLLPPDDPLFNKCIDPMDAL 233
           S+++ D+LP DDPL  KCIDPMDAL
Sbjct: 279 SDEMRDVLPHDDPLLKKCIDPMDAL 303

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	233
TAIR|locus:2037743	330	AT1G15410 [Arabidopsis thalian	0.442	0.312	0.398	1.2e-14

TAIR|locus:2037743 AT1G15410 [Arabidopsis thaliana (taxid:3702)]

 Score = 190 (71.9 bits), Expect = 1.2e-14, P = 1.2e-14
 Identities = 47/118 (39%), Positives = 69/118 (58%)

Query:    53 FLVGSNPVLSKDLLSHERNSLPSLNGRSDLLKLEHALIAENLWS---FLEKLGACYSVIP 109
             F++ S+P L+K+LL +E NS PSL  R +   ++  LI ENL +   +LE+ GA   ++P
Sbjct:   113 FVLCSDPALNKELLLYEENSYPSLYHREESTPVDPKLIVENLRNKRRYLERCGAKLILMP 172

Query:   110 CHIYRIWHDEV--SCFVPFLHV----------TKSKPLEVRSPLGIHVLMTNGILTAG 155
             CHI  IW++EV     VP LH+           K KPLE  +PL + V+ T+  L+AG
Sbjct:   173 CHIAHIWYEEVCEGSLVPLLHMGECIAKELQEAKMKPLEAGNPLRVGVMATSATLSAG 230

GO:0006520 "cellular amino acid metabolic process" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016855 "racemase and epimerase activity, acting on amino acids and derivatives" evidence=IEA;ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00034585001 SubName- Full=Chromosome chr9 scaffold_7, whole genome shotgun sequence; (335 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	233
PRK10200	230	putative racemase; Provisional	100.0
TIGR00035	229	asp_race aspartate racemase.	100.0
COG1794	230	RacX Aspartate racemase [Cell envelope biogenesis,	100.0
TIGR00067	251	glut_race glutamate racemase. The most closely rel	100.0
COG0796	269	MurI Glutamate racemase [Cell envelope biogenesis,	99.96
PRK00865	261	glutamate racemase; Provisional	99.96
PRK07475	245	hypothetical protein; Provisional	99.87
PF01177	216	Asp_Glu_race: Asp/Glu/Hydantoin racemase; InterPro	99.81
COG4126	230	Hydantoin racemase [Amino acid transport and metab	98.46
PRK10481	224	hypothetical protein; Provisional	97.83
TIGR02990	239	ectoine_eutA ectoine utilization protein EutA. Mem	96.59
COG3473	238	Maleate cis-trans isomerase [Secondary metabolites	95.31
PF07302	221	AroM: AroM protein; InterPro: IPR010843 This famil	94.85
TIGR00035	229	asp_race aspartate racemase.	93.29
PRK10200	230	putative racemase; Provisional	91.74
PF06506	176	PrpR_N: Propionate catabolism activator; InterPro:	89.88
COG0462	314	PrsA Phosphoribosylpyrophosphate synthetase [Nucle	87.55
COG1794	230	RacX Aspartate racemase [Cell envelope biogenesis,	87.21
TIGR00222	263	panB 3-methyl-2-oxobutanoate hydroxymethyltransfer	85.38
COG2048	293	HdrB Heterodisulfide reductase, subunit B [Energy	84.37
COG4126	230	Hydantoin racemase [Amino acid transport and metab	84.19
PLN02424	332	ketopantoate hydroxymethyltransferase	83.63
PRK15424	538	propionate catabolism operon regulatory protein Pr	82.01
cd06557	254	KPHMT-like Ketopantoate hydroxymethyltransferase (	81.86
TIGR01917	431	gly_red_sel_B glycine reductase, selenoprotein B.	81.2
PRK00311	264	panB 3-methyl-2-oxobutanoate hydroxymethyltransfer	81.1

>PRK10200 putative racemase; Provisional

Probab=100.00  E-value=2.1e-41  Score=296.44  Aligned_cols=172  Identities=13%  Similarity=0.065  Sum_probs=146.1

Q ss_pred             ccccCCCCCCceEEeeCchh---hhhhhcC-CCCCCCCCCCcchhhhhhHHHHHHHHHH---HHHHcCCcEEeeccchhh
Q 046601           42 SFLLQTDESGKFLVGSNPVL---SKDLLSH-ERNSLPSLNGRSDLLKLEHALIAENLWS---FLEKLGACYSVIPCHIYR  114 (233)
Q Consensus        42 ~~~~~Dqeh~~~iv~~~p~i---t~~il~~-~~~p~~~~~~~~~~~~~~~~~I~~~l~~---~Le~~Gad~IVIaCNTAH  114 (233)
                      .....||||+|.+++|+|++   +++++++ +++|+|                  .+.+   +|+++|||+|||||||||
T Consensus        26 t~a~~d~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~------------------~l~~~~~~L~~~g~~~iviaCNTah   87 (230)
T PRK10200         26 IKQRLGGLHSAQLLLHSVDFHEIEECQRRGEWDKTGD------------------ILAEAALGLQRAGAEGIVLCTNTMH   87 (230)
T ss_pred             HHHHhCCCCCCeEEEeCCChHHHHHHHHCCCcchHHH------------------HHHHHHHHHHHcCCCEEEECCchHH
Confidence            35679999999999999998   7778754 567888                  6666   999999999999999999


Q ss_pred             hhHHhhc--CCCCeech--hchHhHHhhCCCeEEEEcCHHHHhhhhHHHHHcc--------c--cCcchhhhHHHH-HHh
Q 046601          115 IWHDEVS--CFVPFLHV--TKSKPLEVRSPLGIHVLMTNGILTAGVLKLCYQI--------K--ATMEHTLIPAVD-ALN  179 (233)
Q Consensus       115 ~~~del~--~~vPii~i--~tv~~~~~~~~~rVGVLAT~gTi~sglY~~~l~~--------~--~~q~~~v~~~I~-~vk  179 (233)
                      +|+++++  +++||+||  ++.++++..+.++||||||+||++|++|++.++.        +  ++|.. +++.|| .++
T Consensus        88 ~~~~~l~~~~~iPii~ii~~~~~~~~~~~~~~VglLaT~~Ti~s~~Y~~~l~~~~g~~~~~p~~~~q~~-v~~~i~~~l~  166 (230)
T PRK10200         88 KVADAIESRCSLPFLHIADATGRAITGAGMTRVALLGTRYTMEQDFYRGRLTEQFSINCLIPEADERAK-INQIIFEELC  166 (230)
T ss_pred             HHHHHHHHhCCCCEeehHHHHHHHHHHcCCCeEEEeccHHHHHHhHHHHHHHHhcCCeEeCCCHHHHHH-HHHHHHHHHH
Confidence            9999999  89999999  5666666667899999999999999999999861        2  24556 899998 588


Q ss_pred             cCCc-HHHHHHHHHHHHHHhhCCCCEEEEcCCccccCCCCCCCCCCeEecCcccC
Q 046601          180 RKDV-EGATNLLRRALQVLLARAVNIVILASNDILDLLPPDDPLFNKCIDPMDAL  233 (233)
Q Consensus       180 ~G~~-~~~~~~l~~~~~~l~~~gaD~vILGCTElPll~~~~~~~~v~iIDp~~~L  233 (233)
                      +|.. +..++.+++++++|.++|+|+|||||||||++.+.. ....++|||+++|
T Consensus       167 ~G~~~~~~~~~l~~~l~~l~~~g~d~vILGCTelpll~~~~-~~~~~~iD~~~~l  220 (230)
T PRK10200        167 LGQFTEASRAYYAQVIARLAEQGAQGVIFGCTEIGLLVPEE-RSVLPVFDTAAIH  220 (230)
T ss_pred             cCCCCHHHHHHHHHHHHHHHHCCCCEEEECCcCHHHhCCcc-cCCCCeEchHHHH
Confidence            8875 556789999999999999999999999999999762 2346799998764

>TIGR00035 asp_race aspartate racemase

Probab=100.00  E-value=1.5e-39  Score=283.47  Aligned_cols=174  Identities=20%  Similarity=0.307  Sum_probs=147.5

Q ss_pred             cccCCCCCCceEEeeCchh---hhhhhcCC-CCCCCCCCCcchhhhhhHHHHHHHHHHHHHHcCCcEEeeccchhhhhHH
Q 046601           43 FLLQTDESGKFLVGSNPVL---SKDLLSHE-RNSLPSLNGRSDLLKLEHALIAENLWSFLEKLGACYSVIPCHIYRIWHD  118 (233)
Q Consensus        43 ~~~~Dqeh~~~iv~~~p~i---t~~il~~~-~~p~~~~~~~~~~~~~~~~~I~~~l~~~Le~~Gad~IVIaCNTAH~~~d  118 (233)
                      ....||||+|++++|+|++   ++++++++ ++|.+               .+....++|+++|||+|||||||+|+|++
T Consensus        27 ~a~~d~~~~~~i~~~~~~~~dr~~~~~~~~~~~~~~---------------~l~~~~~~L~~~g~d~iviaCNTah~~~~   91 (229)
T TIGR00035        27 KAKRDQEHPAEVLFNNPNIPDRTAYILGRGEDRPRP---------------ILIDIAVKLENAGADFIIMPCNTAHKFAE   91 (229)
T ss_pred             HHhcCCCCCceeeeeCCCHHHHHHHHhcCCcchHHH---------------HHHHHHHHHHHcCCCEEEECCccHHHHHH
Confidence            4679999999999999998   78888654 44665               33333339999999999999999999999


Q ss_pred             hhc--CCCCeech--hchHhHHhhCCCeEEEEcCHHHHhhhhHHHHHc---------cccCcchhhhHHHHH-HhcCCcH
Q 046601          119 EVS--CFVPFLHV--TKSKPLEVRSPLGIHVLMTNGILTAGVLKLCYQ---------IKATMEHTLIPAVDA-LNRKDVE  184 (233)
Q Consensus       119 el~--~~vPii~i--~tv~~~~~~~~~rVGVLAT~gTi~sglY~~~l~---------~~~~q~~~v~~~I~~-vk~G~~~  184 (233)
                      +++  +++|++||  +++++++..+.++||||||++|+++++|++.++         +++.|+. ++..|+. +|+|..+
T Consensus        92 ~l~~~~~iPii~i~~~~~~~~~~~~~~~VgvLaT~~T~~s~~y~~~l~~~g~~v~~p~~~~~~~-i~~~i~~~~~~g~~~  170 (229)
T TIGR00035        92 DIQKAIGIPLISMIEETAEAVKEDGVKKAGLLGTKGTMKDGVYEREMKKHGIEIVTPDKEEQEA-IMSGIYDEVKAGNIE  170 (229)
T ss_pred             HHHHhCCCCEechHHHHHHHHHHcCCCEEEEEecHHHHHhHHHHHHHHHCCCEEECCCHHHHHH-HHHHHHHHHhcCCcH
Confidence            999  89999998  788888767789999999999999999999997         2234555 8888884 8999877


Q ss_pred             HHHHHHHHHHHHHhhCCCCEEEEcCCccccCCCCCCCCCCeEecCcccC
Q 046601          185 GATNLLRRALQVLLARAVNIVILASNDILDLLPPDDPLFNKCIDPMDAL  233 (233)
Q Consensus       185 ~~~~~l~~~~~~l~~~gaD~vILGCTElPll~~~~~~~~v~iIDp~~~L  233 (233)
                      ..++.+++++++|.++|+|+|||||||||++.+. ...++++|||+++|
T Consensus       171 ~~~~~l~~~~~~l~~~gad~iILgCTelpll~~~-~~~~~pviD~~~~~  218 (229)
T TIGR00035       171 LGRELLLKIAKELEERGAEGIILGCTELSLILKA-DDLDVPLIDPMDVI  218 (229)
T ss_pred             HHHHHHHHHHHHHHhCCCCEEEEeCcchHhhccc-ccCCCCeEchHHHH
Confidence            7888999999999999999999999999999874 34478999998764

>COG1794 RacX Aspartate racemase [Cell envelope biogenesis, outer membrane]

Probab=100.00  E-value=3.7e-38  Score=273.21  Aligned_cols=173  Identities=17%  Similarity=0.124  Sum_probs=149.5

Q ss_pred             cccCCCCCCceEEeeCchh---hhhhh-cCCCCCCCCCCCcchhhhhhHHHHHHHHHHHHHHcCCcEEeeccchhhhhHH
Q 046601           43 FLLQTDESGKFLVGSNPVL---SKDLL-SHERNSLPSLNGRSDLLKLEHALIAENLWSFLEKLGACYSVIPCHIYRIWHD  118 (233)
Q Consensus        43 ~~~~Dqeh~~~iv~~~p~i---t~~il-~~~~~p~~~~~~~~~~~~~~~~~I~~~l~~~Le~~Gad~IVIaCNTAH~~~d  118 (233)
                      ....||+|++.++.++|++   ..+.. ++.++|.               +++......|++.|||+|++||||+|.++|
T Consensus        27 ~~~~g~~h~~~i~~~s~~f~~~~~~q~~~~w~~~~---------------~~L~~~a~~Le~~GAd~i~l~~NT~H~~~d   91 (230)
T COG1794          27 RAKLGGLHSAELLLYSVDFPEIETLQRAGEWDEAG---------------EILIDAAKKLERAGADFIVLPTNTMHKVAD   91 (230)
T ss_pred             HHHhCCcCcchhheecCCcccHHHHHccCccccHH---------------HHHHHHHHHHHhcCCCEEEEeCCcHHHHHH
Confidence            4567999999999999998   23333 3334444               455566669999999999999999999999


Q ss_pred             hhc--CCCCeech--hchHhHHhhCCCeEEEEcCHHHHhhhhHHHHHc---------cccCcchhhhHHHHH-HhcCCcH
Q 046601          119 EVS--CFVPFLHV--TKSKPLEVRSPLGIHVLMTNGILTAGVLKLCYQ---------IKATMEHTLIPAVDA-LNRKDVE  184 (233)
Q Consensus       119 el~--~~vPii~i--~tv~~~~~~~~~rVGVLAT~gTi~sglY~~~l~---------~~~~q~~~v~~~I~~-vk~G~~~  184 (233)
                      +++  +++|++||  +|+++++.+|.+|||||||.+|+.+++|++.+.         ++++|+. +++.||. +|+|+..
T Consensus        92 ~iq~~~~iPllhIidaTa~~ik~~g~kkvgLLgT~~Tm~~~fY~~~l~~~gievvvPdd~~q~~-v~~iIy~El~~G~~~  170 (230)
T COG1794          92 DIQKAVGIPLLHIIDATAKAIKAAGAKKVGLLGTRFTMEQGFYRKRLEEKGIEVVVPDDDEQAE-VNRIIYEELCQGIVK  170 (230)
T ss_pred             HHHHhcCCCeehHHHHHHHHHHhcCCceeEEeeccchHHhHHHHHHHHHCCceEecCCHHHHHH-HHHHHHHHHhcccch
Confidence            999  99999999  899999998999999999999999999999998         4556666 9999998 9999964


Q ss_pred             -HHHHHHHHHHHHHhhCCCCEEEEcCCccccCCCCCCCCCCeEecCccc
Q 046601          185 -GATNLLRRALQVLLARAVNIVILASNDILDLLPPDDPLFNKCIDPMDA  232 (233)
Q Consensus       185 -~~~~~l~~~~~~l~~~gaD~vILGCTElPll~~~~~~~~v~iIDp~~~  232 (233)
                       ..++.+.+.++++.++|||.|||||||+|++++. ...++|++|++.+
T Consensus       171 ~~sr~~~~~ii~~l~~~Gae~vIlGCTEi~lll~~-~d~~vP~~Dtt~i  218 (230)
T COG1794         171 DASRELYLAVIERLAERGAEGVILGCTEIPLLLSQ-DDSSVPVFDTTAI  218 (230)
T ss_pred             HHHHHHHHHHHHHHHHcCCCEEEEeccchheeecC-CcccCcccccHHH
Confidence             6799999999999999999999999999999988 4467899999865

>TIGR00067 glut_race glutamate racemase

Probab=100.00  E-value=1.8e-33  Score=249.37  Aligned_cols=151  Identities=17%  Similarity=0.112  Sum_probs=124.9

Q ss_pred             hhhhHHHHHHHHHH---HHH-HcCCcEEeeccchhhh-hHHhhc--CCCCeech--hchHhHHhhC-CCeEEEEcCHHHH
Q 046601           83 LKLEHALIAENLWS---FLE-KLGACYSVIPCHIYRI-WHDEVS--CFVPFLHV--TKSKPLEVRS-PLGIHVLMTNGIL  152 (233)
Q Consensus        83 ~~~~~~~I~~~l~~---~Le-~~Gad~IVIaCNTAH~-~~del~--~~vPii~i--~tv~~~~~~~-~~rVGVLAT~gTi  152 (233)
                      |.+++++|...+.+   +|+ ++|||+|||||||||+ ++++++  +++||+||  ++++++...+ .++||||||+||+
T Consensus        38 G~ks~~~i~~~~~~~~~~L~~~~g~d~ivIaCNTA~a~~~~~l~~~~~iPii~iie~~v~~a~~~~~~~~IgvLAT~~Ti  117 (251)
T TIGR00067        38 GEKSPEFILEYVLELLTFLKERHNIKLLVVACNTASALALEDLQRNFDFPVVGVIEPAIKAAIRLTANGRVLVIATNATI  117 (251)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHhCCCCEEEEeCchHHHHHHHHHHHHCCCCEEeecHHHHHHHHHhCCCCeEEEEeCHHHH
Confidence            57888999999888   998 9999999999999995 599999  89999997  8888886543 4799999999999


Q ss_pred             hhhhHHHHHccccCcch----hhhHHHHHHhcCCc--HHHHHHHHHHHHHHhhCCCCEEEEcCCccccCCCC-C--CCCC
Q 046601          153 TAGVLKLCYQIKATMEH----TLIPAVDALNRKDV--EGATNLLRRALQVLLARAVNIVILASNDILDLLPP-D--DPLF  223 (233)
Q Consensus       153 ~sglY~~~l~~~~~q~~----~v~~~I~~vk~G~~--~~~~~~l~~~~~~l~~~gaD~vILGCTElPll~~~-~--~~~~  223 (233)
                      +|++|++.++.......    -.+..++.||+|..  +.+.+.++++++++.++++|++||||||||++.+. .  .+.+
T Consensus       118 ~s~~y~~~i~~~~~~~~v~~~~~~~lv~~Ie~g~~~~~~~~~~l~~~l~~l~~~~~d~lILGCTh~P~l~~~i~~~~~~~  197 (251)
T TIGR00067       118 KSNAYHEALKEIANDLLVEMLACPELVPLAEAGLLGEDYALECLKRYLRPLLDTLPDTVVLGCTHFPLLKEEIEQYLPEH  197 (251)
T ss_pred             hhhHHHHHHHHhCCCCEEEecCCHHHHHHHHcCCcCCHHHHHHHHHHHHHHhcCCCCEEEECcCChHHHHHHHHHHcCCC
Confidence            99999999982211111    14666778999976  45778899999999989999999999999999866 2  2346


Q ss_pred             CeEecCcccC
Q 046601          224 NKCIDPMDAL  233 (233)
Q Consensus       224 v~iIDp~~~L  233 (233)
                      +++|||++++
T Consensus       198 v~~IDp~~~l  207 (251)
T TIGR00067       198 VRLVDSGVHT  207 (251)
T ss_pred             cEEECCHHHH
Confidence            7999998753

The most closely related proteins differing in function are aspartate racemases.

>COG0796 MurI Glutamate racemase [Cell envelope biogenesis, outer membrane]

Probab=99.96  E-value=5.2e-30  Score=228.58  Aligned_cols=149  Identities=17%  Similarity=0.093  Sum_probs=121.9

Q ss_pred             hhhhhHHHHHHHHHH---HHHHcCCcEEeeccchhhhh-HHhhc--CCCCeech-hchHhHHhhC-CCeEEEEcCHHHHh
Q 046601           82 LLKLEHALIAENLWS---FLEKLGACYSVIPCHIYRIW-HDEVS--CFVPFLHV-TKSKPLEVRS-PLGIHVLMTNGILT  153 (233)
Q Consensus        82 ~~~~~~~~I~~~l~~---~Le~~Gad~IVIaCNTAH~~-~del~--~~vPii~i-~tv~~~~~~~-~~rVGVLAT~gTi~  153 (233)
                      -|++++++|.++..+   +|.+.+++++|||||||++. ++++|  +++||+++ |+++++.+.. +++||||||++|++
T Consensus        44 YG~ks~e~I~~~~~~i~~~l~~~~ik~lVIACNTASa~al~~LR~~~~iPVvGviPaik~A~~~t~~~~IgViaT~~Tvk  123 (269)
T COG0796          44 YGEKSEEEIRERTLEIVDFLLERGIKALVIACNTASAVALEDLREKFDIPVVGVIPAIKPAVALTRNGRIGVIATPATVK  123 (269)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHcCCCEEEEecchHHHHHHHHHHHhCCCCEEEeccchHHHHHhccCCeEEEEeccchhc
Confidence            367889999999988   99999999999999999998 79999  99999999 9999876544 77999999999999


Q ss_pred             hhhHHHHHcc--ccCcchhhhH---HHHHHhcCC--cHHHHHHHHHHHHHHhhCCCCEEEEcCCccccCCCC---CCCCC
Q 046601          154 AGVLKLCYQI--KATMEHTLIP---AVDALNRKD--VEGATNLLRRALQVLLARAVNIVILASNDILDLLPP---DDPLF  223 (233)
Q Consensus       154 sglY~~~l~~--~~~q~~~v~~---~I~~vk~G~--~~~~~~~l~~~~~~l~~~gaD~vILGCTElPll~~~---~~~~~  223 (233)
                      |..|++.+..  .+.+-+ .+.   ..+.+++|.  .+.+.+.+++++.++.+.++|++||||||||++.+.   ..+.+
T Consensus       124 s~~y~~~i~~~~~~~~V~-~la~p~lV~lvE~g~~~~~~~~~~l~~~l~~~~~~~~DtlVLGCTHyPll~~~i~~~~~~~  202 (269)
T COG0796         124 SNAYRDLIARFAPDCEVE-SLACPELVPLVEEGIRGGPVALEVLKEYLPPLQEAGPDTLVLGCTHYPLLKPEIQQVLGEH  202 (269)
T ss_pred             cHHHHHHHHHhCCCCEEE-EecCcchHHHHhcccccCHHHHHHHHHHhcchhccCCCEEEEeCcCcHHHHHHHHHHhCCC
Confidence            9999999982  222211 111   123366665  345688899999999999999999999999999876   23446


Q ss_pred             CeEecCcc
Q 046601          224 NKCIDPMD  231 (233)
Q Consensus       224 v~iIDp~~  231 (233)
                      +++|||+.
T Consensus       203 v~lids~~  210 (269)
T COG0796         203 VALIDSGA  210 (269)
T ss_pred             ceEeCCHH
Confidence            89999974

>PRK00865 glutamate racemase; Provisional

Probab=99.96  E-value=1.5e-29  Score=224.99  Aligned_cols=150  Identities=20%  Similarity=0.149  Sum_probs=119.8

Q ss_pred             hhhhHHHHHHHHHH---HHHHcCCcEEeeccchhhh-hHHhhc--CCCCeech-hchHhHHh-hCCCeEEEEcCHHHHhh
Q 046601           83 LKLEHALIAENLWS---FLEKLGACYSVIPCHIYRI-WHDEVS--CFVPFLHV-TKSKPLEV-RSPLGIHVLMTNGILTA  154 (233)
Q Consensus        83 ~~~~~~~I~~~l~~---~Le~~Gad~IVIaCNTAH~-~~del~--~~vPii~i-~tv~~~~~-~~~~rVGVLAT~gTi~s  154 (233)
                      |.+++++|.+++.+   +|++.|||+|||||||||+ +++++|  +++||+|| ++++.+.. .+.++||||||++|+++
T Consensus        45 G~ks~~~i~~~~~~~~~~L~~~g~d~iVIaCNTa~~~~l~~lr~~~~iPvigi~~a~~~a~~~~~~~~igVLaT~~Ti~s  124 (261)
T PRK00865         45 GEKSEEEIRERTLEIVEFLLEYGVKMLVIACNTASAVALPDLRERYDIPVVGIVPAIKPAAALTRNGRIGVLATPGTVKS  124 (261)
T ss_pred             CCCCHHHHHHHHHHHHHHHHhCCCCEEEEeCchHHHHHHHHHHHhCCCCEEeeHHHHHHHHHhcCCCeEEEEECHHHhhc
Confidence            56788888888888   9999999999999999996 589999  89999999 78777654 35789999999999999


Q ss_pred             hhHHHHHccccCcchhh-hH---HHHHHhcCC--cHHHHHHHHHHHHHHhhCCCCEEEEcCCccccCCCCCC---CCCCe
Q 046601          155 GVLKLCYQIKATMEHTL-IP---AVDALNRKD--VEGATNLLRRALQVLLARAVNIVILASNDILDLLPPDD---PLFNK  225 (233)
Q Consensus       155 glY~~~l~~~~~q~~~v-~~---~I~~vk~G~--~~~~~~~l~~~~~~l~~~gaD~vILGCTElPll~~~~~---~~~v~  225 (233)
                      +.|++.++......++. .+   ....+++|.  .+..++.++++++++.++|+|+|||||||||++.+...   +.+++
T Consensus       125 ~~y~~~i~~~~~~~~v~~~~~~~lv~~ie~g~~~~~~~~~~l~~~l~~l~~~g~d~iILGCTh~p~l~~~i~~~~~~~v~  204 (261)
T PRK00865        125 AAYRDLIARFAPDCQVESLACPELVPLVEAGILGGPVTLEVLREYLAPLLAAGIDTLVLGCTHYPLLKPEIQQVLGEGVT  204 (261)
T ss_pred             hHHHHHHHHhCCCCEEEEecCHHHHHHHhCCCcCCHHHHHHHHHHHHHHhcCCCCEEEECCcCHHHHHHHHHHHcCCCCE
Confidence            99999998332111111 11   223367765  35677889999999988899999999999999886621   34589


Q ss_pred             EecCccc
Q 046601          226 CIDPMDA  232 (233)
Q Consensus       226 iIDp~~~  232 (233)
                      +|||+++
T Consensus       205 vIDp~~~  211 (261)
T PRK00865        205 LIDSGEA  211 (261)
T ss_pred             EECCHHH
Confidence            9999875

>PRK07475 hypothetical protein; Provisional

Probab=99.87  E-value=3.8e-22  Score=176.37  Aligned_cols=135  Identities=12%  Similarity=0.093  Sum_probs=108.0

Q ss_pred             HHHH---HHHHcCCcEEeeccchhhhhHHhhc--CCCCeech--hchHhHHhh--CCCeEEEEcCHHHHhhhhHHHHHc-
Q 046601           93 NLWS---FLEKLGACYSVIPCHIYRIWHDEVS--CFVPFLHV--TKSKPLEVR--SPLGIHVLMTNGILTAGVLKLCYQ-  162 (233)
Q Consensus        93 ~l~~---~Le~~Gad~IVIaCNTAH~~~del~--~~vPii~i--~tv~~~~~~--~~~rVGVLAT~gTi~sglY~~~l~-  162 (233)
                      .+.+   .|+++|||+|+++|||+|+|+++++  +++|++++  ..++.+++.  +.+|||||+|.+|.   +|++.++ 
T Consensus        66 ~l~~aa~~L~~~G~d~I~~~Cgt~~~~~~~l~~~~~VPv~~ss~~~v~~l~~~~~~~~kIGILtt~~t~---l~~~~l~~  142 (245)
T PRK07475         66 AFVAAARELEAEGVRAITTSCGFLALFQRELAAALGVPVATSSLLQVPLIQALLPAGQKVGILTADASS---LTPAHLLA  142 (245)
T ss_pred             HHHHHHHHHHHcCCCEEEechHHHHHHHHHHHHHcCCCEeccHHHHHHHHHHhccCCCeEEEEeCCchh---hhHHHHHh
Confidence            6766   9999999999999999999999999  89999998  666666654  36899999999984   8999987 


Q ss_pred             ---c----------ccCcchhhhHHHH-HHhcCCcHHHHHHHHHHHHHHhh--CCCCEEEEcCCccccCCCC-CCCCCCe
Q 046601          163 ---I----------KATMEHTLIPAVD-ALNRKDVEGATNLLRRALQVLLA--RAVNIVILASNDILDLLPP-DDPLFNK  225 (233)
Q Consensus       163 ---~----------~~~q~~~v~~~I~-~vk~G~~~~~~~~l~~~~~~l~~--~gaD~vILGCTElPll~~~-~~~~~v~  225 (233)
                         +          .+.|.. +++.|| ..+.++.+++.+.+.+++++|.+  .|+|++||||||+|.+.+. ....+.+
T Consensus       143 ~Gi~~~~~~~~~~g~e~~~~-~~~~I~~~~~~~d~~~~~~~l~~~~~~l~~~~~~~daIvL~CTeLp~~~~~le~~~glP  221 (245)
T PRK07475        143 VGVPPDTSSLPIAGLEEGGE-FRRNILENRGELDNEAAEQEVVAAARALLERHPDIGAIVLECTNMPPYAAAIQRATGLP  221 (245)
T ss_pred             CCCCCCCccccccCcccchH-HHHHHhcccccccHHHHHHHHHHHHHHHHhhCCCCCEEEEcCcChHHHHHHHHHhcCCC
Confidence               1          123344 677786 35666667777888889999974  4899999999999987755 2234778


Q ss_pred             EecCcc
Q 046601          226 CIDPMD  231 (233)
Q Consensus       226 iIDp~~  231 (233)
                      ++|+..
T Consensus       222 ViDs~t  227 (245)
T PRK07475        222 VFDIVT  227 (245)
T ss_pred             EEeHHH
Confidence            999864

>PF01177 Asp_Glu_race: Asp/Glu/Hydantoin racemase; InterPro: IPR015942 This entry represents a group of related proteins that includes aspartate racemase, glutamate racemase, hydantoin racemase and arylmalonate decarboxylase

Probab=99.81  E-value=2.2e-20  Score=158.90  Aligned_cols=141  Identities=21%  Similarity=0.236  Sum_probs=109.9

Q ss_pred             HHHHHHH---HHHHcCCcEEeeccchhhhhHHhhc---CCCCeech--hchHhHHhhCCCeEEEEcCHHHHhhhhHHHHH
Q 046601           90 IAENLWS---FLEKLGACYSVIPCHIYRIWHDEVS---CFVPFLHV--TKSKPLEVRSPLGIHVLMTNGILTAGVLKLCY  161 (233)
Q Consensus        90 I~~~l~~---~Le~~Gad~IVIaCNTAH~~~del~---~~vPii~i--~tv~~~~~~~~~rVGVLAT~gTi~sglY~~~l  161 (233)
                      +.+.+.+   .|++.|+|+|+++|||+|+++++++   +++|++++  ++++++.. +.+|||||+|..|..++.|++.+
T Consensus        50 ~~~~~~~~~~~l~~~g~d~i~i~C~s~~~~~~~~~~~~~~iPv~~~~~a~~~~~~~-~~~ri~vl~t~~~~~~~~~~~~~  128 (216)
T PF01177_consen   50 ILDRLIEAAEKLEKAGVDAIVIACNSAHPFVDELRKERVGIPVVGIVEAALEAAKA-GGKRIGVLTTYTTEKSPLYEEFI  128 (216)
T ss_dssp             HHHHHHHHHHHHHHTTESEEEESSHHHHHHHHHHHHHHHSSEEEESHHHHHHHHHH-TSSEEEEEESHHHHHHTHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCEEEEcCCchhhhHHHHhhhcCceEEEeccHHHHHHHHh-cCCEEEEEecCcccchHHHHHHH
Confidence            4445554   8999999999999999999987776   79999998  67777777 79999999999999999999999


Q ss_pred             ccc-c----CcchhhhHHHHH-HhcCCcH-HHHHHHHHHHHHHh-hCCCCEEEEcCCccccCCCC----CCCCCCeEecC
Q 046601          162 QIK-A----TMEHTLIPAVDA-LNRKDVE-GATNLLRRALQVLL-ARAVNIVILASNDILDLLPP----DDPLFNKCIDP  229 (233)
Q Consensus       162 ~~~-~----~q~~~v~~~I~~-vk~G~~~-~~~~~l~~~~~~l~-~~gaD~vILGCTElPll~~~----~~~~~v~iIDp  229 (233)
                      +.. .    .+.. ++..|+. ++.|..+ ...+.+.+.++++. +.|+|+|||||||+|++.+.    ....++++|||
T Consensus       129 ~~~~gi~~~~~~~-i~~~~~~~~e~~~~~~~~~~~~~~~~~~l~~~~~~d~iiLgCt~l~~~~~~~~~l~~~~gipVid~  207 (216)
T PF01177_consen  129 EEAAGIDDEVVAG-IHNAIYDVIELGDIPPEQIEILAEAARELIKEDGADAIILGCTHLPLLLGAIEALEEELGIPVIDS  207 (216)
T ss_dssp             HHCTTEECEEEEE-EEEEHTHHHHTTCTTHHHHHHHHHHHHHHHHCTTSSEEEEESTTGGGGHHHHHHHHHTCSSEEEEH
T ss_pred             HHhcCCcHHHHHH-HHhhcHHHHhhhcCCHHHHHHHHHHHHHHhccCCCCEEEECCCchHHHHHHHHhhcccCCCEEEcc
Confidence            844 2    2233 4555544 4466643 35678888888885 78999999999999987543    22347899999


Q ss_pred             ccc
Q 046601          230 MDA  232 (233)
Q Consensus       230 ~~~  232 (233)
                      .++
T Consensus       208 ~~~  210 (216)
T PF01177_consen  208 NQA  210 (216)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            764

Aspartate racemase (5.1.1.13 from EC) and glutamate racemase (5.1.1.3 from EC) are two evolutionary related bacterial enzymes that do not seem to require a cofactor for their activity []. Glutamate racemase, which interconverts L-glutamate into D-glutamate, is required for the biosynthesis of peptidoglycan and some peptide-based antibiotics such as gramicidin S. In addition to characterised aspartate and glutamate racemases, this family also includes a hypothetical protein from Erwinia carotovora and one from Escherichia coli (ygeA). Two conserved cysteines are present in the sequence of these enzymes. They are expected to play a role in catalytic activity by acting as bases in proton abstraction from the substrate.; PDB: 3S7Z_A 3S81_C 3OUT_A 3EIS_B 3IXL_A 3IP8_A 2VLB_D 3DTV_A 3IXM_A 3DG9_A ....

>COG4126 Hydantoin racemase [Amino acid transport and metabolism]

Probab=98.46  E-value=2.1e-07  Score=81.38  Aligned_cols=131  Identities=16%  Similarity=0.117  Sum_probs=82.1

Q ss_pred             HHHHcCCcEEeeccchhhhhHHhhc--CCCCeech--hchHhHHhhCCCeEEEEcCHHHHhhhh-HHHHHccccCcchhh
Q 046601           97 FLEKLGACYSVIPCHIYRIWHDEVS--CFVPFLHV--TKSKPLEVRSPLGIHVLMTNGILTAGV-LKLCYQIKATMEHTL  171 (233)
Q Consensus        97 ~Le~~Gad~IVIaCNTAH~~~del~--~~vPii~i--~tv~~~~~~~~~rVGVLAT~gTi~sgl-Y~~~l~~~~~q~~~v  171 (233)
                      .-+..|||+++|+|-.= +-++.+|  ..+|++|+  +.+..+.. -.+|++|+-|.-  ++.. -++.+++.-.+....
T Consensus        64 ~~~~~GvdaiiIaCf~D-Pgl~~~Re~~~~PviGi~eAsv~~A~~-vgrrfsViTtt~--rs~~il~~lv~~~g~s~~~~  139 (230)
T COG4126          64 DGEEQGVDAIIIACFSD-PGLAAARERAAIPVIGICEASVLAALF-VGRRFSVITTTE--RSRPILEELVRSYGLSRHCR  139 (230)
T ss_pred             cccccCCcEEEEEecCC-hHHHHHHHHhCCCceehhHHHHHHHHH-hcceEEEEecCc--ccHHHHHHHHHhcCcccccc
Confidence            44567999999999987 7788888  89999999  44444332 278999998832  2221 122222222121100


Q ss_pred             -hHHHHH-H--hcCCcHHHHH-HHHHHHHHHhhCCCCEEEEcCCccccCCCC-CCCCCCeEecCcc
Q 046601          172 -IPAVDA-L--NRKDVEGATN-LLRRALQVLLARAVNIVILASNDILDLLPP-DDPLFNKCIDPMD  231 (233)
Q Consensus       172 -~~~I~~-v--k~G~~~~~~~-~l~~~~~~l~~~gaD~vILGCTElPll~~~-~~~~~v~iIDp~~  231 (233)
                       ..+... +  -.+..++++. ...++.+.+.+.|+|++||||+=++-+.+. ....++|+||+..
T Consensus       140 ~vrstdl~vL~l~~~~~~~~~~l~~~~~~a~~edgAeaIiLGCAGms~la~~Lq~~~gvPVIDgv~  205 (230)
T COG4126         140 SVRSTDLPVLALEGPPEEAEALLVIEAAEALKEDGAEAIILGCAGMSDLADQLQKAFGVPVIDGVA  205 (230)
T ss_pred             ceeeCCCCcccccCChHHHHHHHHHHHHHHhhhcCCCEEEEcCccHHHHHHHHHHHhCCCcccchH
Confidence             001100 1  1233445544 445555667778999999999999988766 3456899999854

>PRK10481 hypothetical protein; Provisional

Probab=97.83  E-value=2.4e-05  Score=68.94  Aligned_cols=153  Identities=12%  Similarity=0.033  Sum_probs=90.4

Q ss_pred             CCCCCCCCCCcchhhhhhHHHHHHHHHH---HHHHcCCcEEeeccchhhhhHHhhc--CCCCeech-hchHhHHhhCCCe
Q 046601           69 ERNSLPSLNGRSDLLKLEHALIAENLWS---FLEKLGACYSVIPCHIYRIWHDEVS--CFVPFLHV-TKSKPLEVRSPLG  142 (233)
Q Consensus        69 ~~~p~~~~~~~~~~~~~~~~~I~~~l~~---~Le~~Gad~IVIaCNTAH~~~del~--~~vPii~i-~tv~~~~~~~~~r  142 (233)
                      ++.++-|.---.++-..+++.|...+.+   .|++.|+|+|++.|-.--.-++..+  ...|...| +.++.+..  .+|
T Consensus        54 ~~~~lvtrL~dG~~v~~s~~~v~~~lq~~i~~l~~~g~d~ivl~Ctgdfp~l~a~r~~l~~P~~~i~~lv~Al~~--g~r  131 (224)
T PRK10481         54 GEDVLVTRLNDGQQVHVSKQKVERDLQSVIEVLDNQGYDVILLLCTGEFPSLTARNAILLEPSRILPPLVAAIVG--GHQ  131 (224)
T ss_pred             CCceeEEEecCCCEEEEEHHHHHHHHHHHHHHHHhCCCCEEEEEecCCCCCccccCccccCchhhHHHHHHHhcC--CCe
Confidence            3444443333334445666666666666   9999999999999975423344444  44577777 66655443  579


Q ss_pred             EEEEcCHHHHhhhhHHHHHccccCcchhhhHHHHHHhcCCcHHHHHHHHHHHHHHhhCCCCEEEEcCCccccCCCC--CC
Q 046601          143 IHVLMTNGILTAGVLKLCYQIKATMEHTLIPAVDALNRKDVEGATNLLRRALQVLLARAVNIVILASNDILDLLPP--DD  220 (233)
Q Consensus       143 VGVLAT~gTi~sglY~~~l~~~~~q~~~v~~~I~~vk~G~~~~~~~~l~~~~~~l~~~gaD~vILGCTElPll~~~--~~  220 (233)
                      +||+..-..--...-++..+.  ..+- ..    ...+ ......+.+.+..+.|.+.|+|+++++||=|..-...  ..
T Consensus       132 iGVitP~~~qi~~~~~kw~~~--G~~v-~~----~~as-py~~~~~~l~~aa~~L~~~gaD~Ivl~C~G~~~~~~~~le~  203 (224)
T PRK10481        132 VGVIVPVEEQLAQQAQKWQVL--QKPP-VF----ALAS-PYHGSEEELIDAGKELLDQGADVIVLDCLGYHQRHRDLLQK  203 (224)
T ss_pred             EEEEEeCHHHHHHHHHHHHhc--CCce-eE----eecC-CCCCCHHHHHHHHHHhhcCCCCEEEEeCCCcCHHHHHHHHH
Confidence            999977333322222222221  1111 10    0111 0112234677788889889999999999999952221  23


Q ss_pred             CCCCeEecCcc
Q 046601          221 PLFNKCIDPMD  231 (233)
Q Consensus       221 ~~~v~iIDp~~  231 (233)
                      ..++|+|+|..
T Consensus       204 ~lg~PVI~~n~  214 (224)
T PRK10481        204 ALDVPVLLSNV  214 (224)
T ss_pred             HHCcCEEcHHH
Confidence            45788998854

>TIGR02990 ectoine_eutA ectoine utilization protein EutA

Probab=96.59  E-value=0.0019  Score=57.31  Aligned_cols=126  Identities=9%  Similarity=0.027  Sum_probs=76.7

Q ss_pred             HHHHcCCcEEeeccchhhhhH------Hhhc---CCCCeech--hchHhHHhhCCCeEEEEcCHHHHhhhhHHHHHc---
Q 046601           97 FLEKLGACYSVIPCHIYRIWH------DEVS---CFVPFLHV--TKSKPLEVRSPLGIHVLMTNGILTAGVLKLCYQ---  162 (233)
Q Consensus        97 ~Le~~Gad~IVIaCNTAH~~~------del~---~~vPii~i--~tv~~~~~~~~~rVGVLAT~gTi~sglY~~~l~---  162 (233)
                      .|..+++|+|+.+|-.++...      ++++   ..+|+...  +.++.++..+.+||+|+.-        |.+.+.   
T Consensus        66 ll~~a~~dvi~~~cTsgs~~~G~~~~~~~i~~~~~g~p~tt~~~A~~~AL~alg~~RIalvTP--------Y~~~v~~~~  137 (239)
T TIGR02990        66 ILPDEELDVVAYSCTSASVVIGDDEVTRAINAAKPGTPVVTPSSAAVDGLAALGVRRISLLTP--------YTPETSRPM  137 (239)
T ss_pred             hcCCCCCCEEEEccchhheecCHHHHHHHHHhcCCCCCeeCHHHHHHHHHHHcCCCEEEEECC--------CcHHHHHHH
Confidence            334589999999999998853      2333   46899997  6667778788999998854        333332   


Q ss_pred             ----cccCcchhhhHHH-HHHhcCC-c-HHHHHHHHHHHHHHhhCCCCEEEEcCCccccCCC--C-CCCCCCeEecCccc
Q 046601          163 ----IKATMEHTLIPAV-DALNRKD-V-EGATNLLRRALQVLLARAVNIVILASNDILDLLP--P-DDPLFNKCIDPMDA  232 (233)
Q Consensus       163 ----~~~~q~~~v~~~I-~~vk~G~-~-~~~~~~l~~~~~~l~~~gaD~vILGCTElPll~~--~-~~~~~v~iIDp~~~  232 (233)
                          .+...+.  .... ..+..+. . .-..+.+.+.+..+...++|+|++.||-++-+--  . ....++|+|++..+
T Consensus       138 ~~~l~~~G~eV--~~~~~~~~~~~~~ia~i~p~~i~~~~~~~~~~~aDAifisCTnLrt~~vi~~lE~~lGkPVlsSNqa  215 (239)
T TIGR02990       138 AQYFAVRGFEI--VNFTCLGLTDDREMARISPDCIVEAALAAFDPDADALFLSCTALRAATCAQRIEQAIGKPVVTSNQA  215 (239)
T ss_pred             HHHHHhCCcEE--eeeeccCCCCCceeeecCHHHHHHHHHHhcCCCCCEEEEeCCCchhHHHHHHHHHHHCCCEEEHHHH
Confidence                1111111  1100 0111111 1 1123456666666667799999999999986432  1 23357788887643

Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.

>COG3473 Maleate cis-trans isomerase [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=95.31  E-value=0.036  Score=48.73  Aligned_cols=130  Identities=14%  Similarity=0.111  Sum_probs=80.3

Q ss_pred             HHHHcCCcEEeeccchhhhh----H-Hhh----c--CCCCeech--hchHhHHhhCCCeEEEEcCHHHHhhhhHHHHHcc
Q 046601           97 FLEKLGACYSVIPCHIYRIW----H-DEV----S--CFVPFLHV--TKSKPLEVRSPLGIHVLMTNGILTAGVLKLCYQI  163 (233)
Q Consensus        97 ~Le~~Gad~IVIaCNTAH~~----~-del----~--~~vPii~i--~tv~~~~~~~~~rVGVLAT~gTi~sglY~~~l~~  163 (233)
                      .|-.+|+|.|+-+|-+++.+    | .++    +  .++|++--  +.++.+++-+.+||.|+ ||.+....--+..+-.
T Consensus        62 ~Lada~vdvI~Y~CtsgS~i~G~~~d~ei~~~ie~~~~v~vvTts~Avv~aL~al~a~ri~vl-TPY~~evn~~e~ef~~  140 (238)
T COG3473          62 ELADAGVDVIVYGCTSGSLIGGPGYDKEIAQRIEEAKGVPVVTTSTAVVEALNALGAQRISVL-TPYIDEVNQREIEFLE  140 (238)
T ss_pred             hcCccccCEEEEeccceeeecCCchhHHHHHHHHhccCCceeechHHHHHHHHhhCcceEEEe-ccchhhhhhHHHHHHH
Confidence            77889999999999999985    2 233    3  67899887  77777888778888665 6666554322222212


Q ss_pred             ccCcchhhhHH----H-HHHhcCCcHHHHHHHHHHHHHHhhCCCCEEEEcCCccccCCCC---CCCCCCeEecCcc
Q 046601          164 KATMEHTLIPA----V-DALNRKDVEGATNLLRRALQVLLARAVNIVILASNDILDLLPP---DDPLFNKCIDPMD  231 (233)
Q Consensus       164 ~~~q~~~v~~~----I-~~vk~G~~~~~~~~l~~~~~~l~~~gaD~vILGCTElPll~~~---~~~~~v~iIDp~~  231 (233)
                      ....+  +.+.    | .+++-|..+.  ..+-+....+..-++|++...||-++-+.--   ....++|+|.|..
T Consensus       141 ~~Gfe--iv~~~~Lgi~dn~eigr~~P--~~~y~lAk~~~~~~~DaiFiSCTnlRt~eii~~lE~~~G~PVvsSN~  212 (238)
T COG3473         141 ANGFE--IVDFKGLGITDNLEIGRQEP--WAVYRLAKEVFTPDADAIFISCTNLRTFEIIEKLERDTGVPVVSSNQ  212 (238)
T ss_pred             hCCeE--EEEeeccCCcccchhcccCh--HHHHHHHHHhcCCCCCeEEEEeeccccHHHHHHHHHHhCCceeeccH
Confidence            22222  1111    1 2244454321  2334455556677999999999999754321   2334677887654

>PF07302 AroM: AroM protein; InterPro: IPR010843 This family consists of several bacterial and archaeal AroM proteins

Probab=94.85  E-value=0.13  Score=45.49  Aligned_cols=120  Identities=14%  Similarity=0.097  Sum_probs=71.9

Q ss_pred             hhhhhHHHHHHHHHH---HHHHcCCcEEeeccchhhhhHHhhcCCCCeech-----hchHhHHhhCCCeEEEEcCHHHHh
Q 046601           82 LLKLEHALIAENLWS---FLEKLGACYSVIPCHIYRIWHDEVSCFVPFLHV-----TKSKPLEVRSPLGIHVLMTNGILT  153 (233)
Q Consensus        82 ~~~~~~~~I~~~l~~---~Le~~Gad~IVIaCNTAH~~~del~~~vPii~i-----~tv~~~~~~~~~rVGVLAT~gTi~  153 (233)
                      +-..+++.+...+.+   .|++.|+|.|++-|---   +..+..+.|+|.=     +.++.+..  ..+|||+.=..--.
T Consensus        64 ~V~ls~~~v~~~lq~~i~~le~~G~d~illlCTG~---F~~l~~~~~lleP~ril~~lV~al~~--~~~vGVivP~~eQ~  138 (221)
T PF07302_consen   64 QVVLSKKKVEPRLQACIAQLEAQGYDVILLLCTGE---FPGLTARNPLLEPDRILPPLVAALVG--GHQVGVIVPLPEQI  138 (221)
T ss_pred             EEEEEHHHHHHHHHHHHHHHHHCCCCEEEEeccCC---CCCCCCCcceeehHHhHHHHHHHhcC--CCeEEEEecCHHHH
Confidence            344566667777776   99999999999999532   2234433444442     44444332  47999997655444


Q ss_pred             hhhHHHHHcc-ccCcchhhhHHHHHHhcCCcHHHHHHHHHHHHHHhhCCCCEEEEcCCccccC
Q 046601          154 AGVLKLCYQI-KATMEHTLIPAVDALNRKDVEGATNLLRRALQVLLARAVNIVILASNDILDL  215 (233)
Q Consensus       154 sglY~~~l~~-~~~q~~~v~~~I~~vk~G~~~~~~~~l~~~~~~l~~~gaD~vILGCTElPll  215 (233)
                      ...+++.-.- ....-         ..+.......+.+.++.+.|.++|+|.|||-|==|.--
T Consensus       139 ~~~~~kW~~l~~~~~~---------a~asPy~~~~~~l~~Aa~~L~~~gadlIvLDCmGYt~~  192 (221)
T PF07302_consen  139 AQQAEKWQPLGNPVVV---------AAASPYEGDEEELAAAARELAEQGADLIVLDCMGYTQE  192 (221)
T ss_pred             HHHHHHHHhcCCCeEE---------EEeCCCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCHH
Confidence            4333333220 00000         01111112356788899999999999999999776643

In Escherichia coli the aroM gene is cotranscribed with aroL []. The function of this family is unknown.

>TIGR00035 asp_race aspartate racemase

Probab=93.29  E-value=0.16  Score=44.26  Aligned_cols=89  Identities=16%  Similarity=0.160  Sum_probs=52.8

Q ss_pred             CeEEEEcCHHHHhhh-hHHHHHc---cccCcch---hh--hHHHHH----HhcCCcHHHHHHHHHHHHHHhhCCCCEEEE
Q 046601          141 LGIHVLMTNGILTAG-VLKLCYQ---IKATMEH---TL--IPAVDA----LNRKDVEGATNLLRRALQVLLARAVNIVIL  207 (233)
Q Consensus       141 ~rVGVLAT~gTi~sg-lY~~~l~---~~~~q~~---~v--~~~I~~----vk~G~~~~~~~~l~~~~~~l~~~gaD~vIL  207 (233)
                      ++|||+|--|...+- +|++..+   ...+|+.   ++  .+.+++    +..+..+.....+.+.++.|.+.|+|.+++
T Consensus         2 ~~iGiiGGmgp~at~~~~~~i~~~~~a~~d~~~~~~i~~~~~~~~dr~~~~~~~~~~~~~~~l~~~~~~L~~~g~d~ivi   81 (229)
T TIGR00035         2 NMIGILGGMGPLATAELFRRINEKTKAKRDQEHPAEVLFNNPNIPDRTAYILGRGEDRPRPILIDIAVKLENAGADFIIM   81 (229)
T ss_pred             CeEEEecCcCHHHHHHHHHHHHHHhHHhcCCCCCceeeeeCCCHHHHHHHHhcCCcchHHHHHHHHHHHHHHcCCCEEEE
Confidence            468888654444443 5665554   2233333   11  112322    444555567788999999999999999999


Q ss_pred             cCCccccCCCC-CCCCCCeEecC
Q 046601          208 ASNDILDLLPP-DDPLFNKCIDP  229 (233)
Q Consensus       208 GCTElPll~~~-~~~~~v~iIDp  229 (233)
                      +|.=-..+.+. ....++++|..
T Consensus        82 aCNTah~~~~~l~~~~~iPii~i  104 (229)
T TIGR00035        82 PCNTAHKFAEDIQKAIGIPLISM  104 (229)
T ss_pred             CCccHHHHHHHHHHhCCCCEech
Confidence            99644443433 22235666653

>PRK10200 putative racemase; Provisional

Probab=91.74  E-value=0.41  Score=42.05  Aligned_cols=88  Identities=13%  Similarity=0.061  Sum_probs=53.1

Q ss_pred             CeEEEEcCHHHHhhh-hHHHHHc---cccCcch---hh--hHHHH----HHhcCCcHHHHHHHHHHHHHHhhCCCCEEEE
Q 046601          141 LGIHVLMTNGILTAG-VLKLCYQ---IKATMEH---TL--IPAVD----ALNRKDVEGATNLLRRALQVLLARAVNIVIL  207 (233)
Q Consensus       141 ~rVGVLAT~gTi~sg-lY~~~l~---~~~~q~~---~v--~~~I~----~vk~G~~~~~~~~l~~~~~~l~~~gaD~vIL  207 (233)
                      ++|||||--|...+- +|++..+   ...+|+.   ++  ..-+.    .+..++.+.....|.+.++.|.+.|||.+|+
T Consensus         2 k~iGilGGmGp~aT~~~~~~i~~~t~a~~d~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~l~~~~~~L~~~g~~~ivi   81 (230)
T PRK10200          2 KTIGLLGGMSWESTIPYYRLINEGIKQRLGGLHSAQLLLHSVDFHEIEECQRRGEWDKTGDILAEAALGLQRAGAEGIVL   81 (230)
T ss_pred             CeEEEccCCCHHHHHHHHHHHHHHHHHHhCCCCCCeEEEeCCChHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCEEEE
Confidence            468888555544443 5665554   1122222   11  11122    2555665667789999999999999999999


Q ss_pred             cCCccccCCCC-CCCCCCeEec
Q 046601          208 ASNDILDLLPP-DDPLFNKCID  228 (233)
Q Consensus       208 GCTElPll~~~-~~~~~v~iID  228 (233)
                      +|-=-....+. ....++|+|+
T Consensus        82 aCNTah~~~~~l~~~~~iPii~  103 (230)
T PRK10200         82 CTNTMHKVADAIESRCSLPFLH  103 (230)
T ss_pred             CCchHHHHHHHHHHhCCCCEee
Confidence            99755544444 2223566665

>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []

Probab=89.88  E-value=1.1  Score=37.52  Aligned_cols=101  Identities=12%  Similarity=0.140  Sum_probs=55.2

Q ss_pred             HHHHHHHHcCCcEEeeccchhhhhHHhhcCCCCeech-hc----hHhHHh--hCCCeEEEEcCHHHHh-hhhHHHHHccc
Q 046601           93 NLWSFLEKLGACYSVIPCHIYRIWHDEVSCFVPFLHV-TK----SKPLEV--RSPLGIHVLMTNGILT-AGVLKLCYQIK  164 (233)
Q Consensus        93 ~l~~~Le~~Gad~IVIaCNTAH~~~del~~~vPii~i-~t----v~~~~~--~~~~rVGVLAT~gTi~-sglY~~~l~~~  164 (233)
                      ...+.+++.|+|.|+--=-||+..-+.  +++|++.| .+    ++.+..  ...++||+++-+..+. ...+.+.+.- 
T Consensus        25 ~a~~~~~~~g~dViIsRG~ta~~lr~~--~~iPVV~I~~s~~Dil~al~~a~~~~~~Iavv~~~~~~~~~~~~~~ll~~-  101 (176)
T PF06506_consen   25 EARQLLESEGADVIISRGGTAELLRKH--VSIPVVEIPISGFDILRALAKAKKYGPKIAVVGYPNIIPGLESIEELLGV-  101 (176)
T ss_dssp             HHHHHHTTTT-SEEEEEHHHHHHHHCC---SS-EEEE---HHHHHHHHHHCCCCTSEEEEEEESS-SCCHHHHHHHHT--
T ss_pred             HHHHhhHhcCCeEEEECCHHHHHHHHh--CCCCEEEECCCHhHHHHHHHHHHhcCCcEEEEecccccHHHHHHHHHhCC-
Confidence            333344889999999888888765433  58999998 22    222222  2367999999877664 3444444431 


Q ss_pred             cCcchhhhHHHHHHhcCCcHHHHHHHHHHHHHHhhCCCCEEEEcC
Q 046601          165 ATMEHTLIPAVDALNRKDVEGATNLLRRALQVLLARAVNIVILAS  209 (233)
Q Consensus       165 ~~q~~~v~~~I~~vk~G~~~~~~~~l~~~~~~l~~~gaD~vILGC  209 (233)
                      +            ++.-.. ...+.++..++.+.+.|+|++|=|=
T Consensus       102 ~------------i~~~~~-~~~~e~~~~i~~~~~~G~~viVGg~  133 (176)
T PF06506_consen  102 D------------IKIYPY-DSEEEIEAAIKQAKAEGVDVIVGGG  133 (176)
T ss_dssp             E------------EEEEEE-SSHHHHHHHHHHHHHTT--EEEESH
T ss_pred             c------------eEEEEE-CCHHHHHHHHHHHHHcCCcEEECCH
Confidence            0            000000 0124466777788888998777553

Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.

>COG0462 PrsA Phosphoribosylpyrophosphate synthetase [Nucleotide transport and metabolism / Amino acid transport and metabolism]

Probab=87.55  E-value=0.87  Score=42.25  Aligned_cols=133  Identities=16%  Similarity=0.129  Sum_probs=86.4

Q ss_pred             CcchhhhhhHHHHHHHHHH-HHHHcCCcEEeeccchhhhhHHhhc--CCCCeech---hch-HhHHhhC-CCeEEEEc--
Q 046601           78 GRSDLLKLEHALIAENLWS-FLEKLGACYSVIPCHIYRIWHDEVS--CFVPFLHV---TKS-KPLEVRS-PLGIHVLM--  147 (233)
Q Consensus        78 ~~~~~~~~~~~~I~~~l~~-~Le~~Gad~IVIaCNTAH~~~del~--~~vPii~i---~tv-~~~~~~~-~~rVGVLA--  147 (233)
                      .|.+..-++++.|...+.. .|+.+|+|-|+-    .-...++++  +++|+-|+   +.+ ++++... ....-|++  
T Consensus        96 ARQDk~~~~repIsaklvA~lL~~aG~drv~T----vDlH~~qiqgfFdipvdnl~a~p~l~~~~~~~~~~~d~vVVSPD  171 (314)
T COG0462          96 ARQDKAFKPREPISAKLVANLLETAGADRVLT----VDLHAPQIQGFFDIPVDNLYAAPLLAEYIREKYDLDDPVVVSPD  171 (314)
T ss_pred             hccCcccCCCCCEeHHHHHHHHHHcCCCeEEE----EcCCchhhcccCCCccccccchHHHHHHHHHhcCCCCcEEECCC
Confidence            4566333788888888888 999999999973    333456778  89999998   333 3455442 21344444  


Q ss_pred             CHHHHhhhhHHHHHc------c-----ccCcchhhhHHHHHHhcCC---cH---HHHHHHHHHHHHHhhCCCCEEEEcCC
Q 046601          148 TNGILTAGVLKLCYQ------I-----KATMEHTLIPAVDALNRKD---VE---GATNLLRRALQVLLARAVNIVILASN  210 (233)
Q Consensus       148 T~gTi~sglY~~~l~------~-----~~~q~~~v~~~I~~vk~G~---~~---~~~~~l~~~~~~l~~~gaD~vILGCT  210 (233)
                      .-|.-+.+.+.+.+.      +     .....+ ++..+-+++...   .+   ..-..+-++.+.|.++||--|+..||
T Consensus       172 ~Ggv~RAr~~A~~L~~~~a~i~K~R~~~~~~v~-~~~~~gdV~gk~~iiVDDiIdTgGTi~~Aa~~Lk~~GAk~V~a~~t  250 (314)
T COG0462         172 KGGVKRARALADRLGAPLAIIDKRRDSSPNVVE-VMNLIGDVEGKDVVIVDDIIDTGGTIAKAAKALKERGAKKVYAAAT  250 (314)
T ss_pred             ccHHHHHHHHHHHhCCCEEEEEEeecCCCCeEE-EeecccccCCCEEEEEeccccccHHHHHHHHHHHHCCCCeEEEEEE
Confidence            235666677777776      1     111222 555555555432   11   12356778889999999999999999


Q ss_pred             ccccC
Q 046601          211 DILDL  215 (233)
Q Consensus       211 ElPll  215 (233)
                      |-=+.
T Consensus       251 H~vfs  255 (314)
T COG0462         251 HGVFS  255 (314)
T ss_pred             chhhC
Confidence            96554

>COG1794 RacX Aspartate racemase [Cell envelope biogenesis, outer membrane]

Probab=87.21  E-value=0.65  Score=41.20  Aligned_cols=88  Identities=14%  Similarity=0.117  Sum_probs=55.9

Q ss_pred             CeEEEEcCHHHHhhh-hHHHHHc---cccCcch---hhhHH-----H-HHHhcCCcHHHHHHHHHHHHHHhhCCCCEEEE
Q 046601          141 LGIHVLMTNGILTAG-VLKLCYQ---IKATMEH---TLIPA-----V-DALNRKDVEGATNLLRRALQVLLARAVNIVIL  207 (233)
Q Consensus       141 ~rVGVLAT~gTi~sg-lY~~~l~---~~~~q~~---~v~~~-----I-~~vk~G~~~~~~~~l~~~~~~l~~~gaD~vIL  207 (233)
                      |+||+||--+.-.+- +|++..+   ..-+|..   +++-.     + +.-+.|+.+++.+.|.++...|.+.|||.+++
T Consensus         2 k~iGilGGMgpeST~~yyr~ine~~~~~~g~~h~~~i~~~s~~f~~~~~~q~~~~w~~~~~~L~~~a~~Le~~GAd~i~l   81 (230)
T COG1794           2 KTIGILGGMGPESTAPYYRKINEAVRAKLGGLHSAELLLYSVDFPEIETLQRAGEWDEAGEILIDAAKKLERAGADFIVL   81 (230)
T ss_pred             ceeEeccCCChHHHHHHHHHHHHHHHHHhCCcCcchhheecCCcccHHHHHccCccccHHHHHHHHHHHHHhcCCCEEEE
Confidence            578888655544444 4555544   1122222   12111     2 23566778888999999999999999999999


Q ss_pred             cCCccccCCCC-CCCCCCeEec
Q 046601          208 ASNDILDLLPP-DDPLFNKCID  228 (233)
Q Consensus       208 GCTElPll~~~-~~~~~v~iID  228 (233)
                      .|-=-..+.+. ....++|+|+
T Consensus        82 ~~NT~H~~~d~iq~~~~iPllh  103 (230)
T COG1794          82 PTNTMHKVADDIQKAVGIPLLH  103 (230)
T ss_pred             eCCcHHHHHHHHHHhcCCCeeh
Confidence            99877766665 3334566554

>TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase

Probab=85.38  E-value=1.5  Score=39.71  Aligned_cols=32  Identities=22%  Similarity=0.347  Sum_probs=28.2

Q ss_pred             HHHHcCCcEEeeccchhhhhHHhhc--CCCCeech
Q 046601           97 FLEKLGACYSVIPCHIYRIWHDEVS--CFVPFLHV  129 (233)
Q Consensus        97 ~Le~~Gad~IVIaCNTAH~~~del~--~~vPii~i  129 (233)
                      .++++||++++++|-. +....++.  +++|+++|
T Consensus       168 a~e~AGA~~ivlE~vp-~~~a~~It~~l~iP~iGI  201 (263)
T TIGR00222       168 ALEEAGAQLLVLECVP-VELAAKITEALAIPVIGI  201 (263)
T ss_pred             HHHHcCCCEEEEcCCc-HHHHHHHHHhCCCCEEee
Confidence            8999999999999999 45667776  89999999

Members of this family are 3-methyl-2-oxobutanoate hydroxymethyltransferase, the first enzyme of the pantothenate biosynthesis pathway. An alternate name is ketopantoate hydroxymethyltransferase.

>COG2048 HdrB Heterodisulfide reductase, subunit B [Energy production and conversion]

Probab=84.37  E-value=1.2  Score=40.94  Aligned_cols=33  Identities=27%  Similarity=0.427  Sum_probs=28.1

Q ss_pred             HHHHcCCcEEeeccchhhhhHHhhc----------CCCCeech
Q 046601           97 FLEKLGACYSVIPCHIYRIWHDEVS----------CFVPFLHV  129 (233)
Q Consensus        97 ~Le~~Gad~IVIaCNTAH~~~del~----------~~vPii~i  129 (233)
                      .+.++|+|+||-||-+-|..+|+-|          +++|++|.
T Consensus       217 ~~ke~gad~ivt~Cp~Chlq~D~~q~~i~~~~g~~~~~pv~~~  259 (293)
T COG2048         217 SAKEAGADCIVTPCPLCHLQLDRGQPEIKKKFGIDYDIPVLHL  259 (293)
T ss_pred             HHHhcCCCEEEecCccceeehhhccHHHHHhcCCCCCCceeeH
Confidence            5556699999999999999987665          67899998

>COG4126 Hydantoin racemase [Amino acid transport and metabolism]

Probab=84.19  E-value=1.8  Score=38.45  Aligned_cols=33  Identities=21%  Similarity=0.207  Sum_probs=31.4

Q ss_pred             HHHHcCCcEEeeccchhhhhHHhhc--CCCCeech
Q 046601           97 FLEKLGACYSVIPCHIYRIWHDEVS--CFVPFLHV  129 (233)
Q Consensus        97 ~Le~~Gad~IVIaCNTAH~~~del~--~~vPii~i  129 (233)
                      .++..|+|+|++-|--.+...++||  +++||++-
T Consensus       169 a~~edgAeaIiLGCAGms~la~~Lq~~~gvPVIDg  203 (230)
T COG4126         169 ALKEDGAEAIILGCAGMSDLADQLQKAFGVPVIDG  203 (230)
T ss_pred             HhhhcCCCEEEEcCccHHHHHHHHHHHhCCCcccc
Confidence            8899999999999999999999999  99999995

>PLN02424 ketopantoate hydroxymethyltransferase

Probab=83.63  E-value=2  Score=40.24  Aligned_cols=41  Identities=12%  Similarity=0.173  Sum_probs=32.8

Q ss_pred             HHHHHHHHH--HHHHcCCcEEeeccchhhhhHHhhc--CCCCeech
Q 046601           88 ALIAENLWS--FLEKLGACYSVIPCHIYRIWHDEVS--CFVPFLHV  129 (233)
Q Consensus        88 ~~I~~~l~~--~Le~~Gad~IVIaCNTAH~~~del~--~~vPii~i  129 (233)
                      +...+.+.+  .|+++||..||++|-... ...++.  +++|.|+|
T Consensus       179 ~~a~~li~dA~ale~AGAf~ivLE~Vp~~-la~~It~~l~IPtIGI  223 (332)
T PLN02424        179 ESAVKVVETALALQEAGCFAVVLECVPAP-VAAAITSALQIPTIGI  223 (332)
T ss_pred             HHHHHHHHHHHHHHHcCCcEEEEcCCcHH-HHHHHHHhCCCCEEee
Confidence            334443333  999999999999999988 667776  89999999

>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional

Probab=82.01  E-value=9.5  Score=37.86  Aligned_cols=104  Identities=11%  Similarity=0.052  Sum_probs=61.4

Q ss_pred             HHHHHHHHHHHHcCCcEEeeccchhhhhHHhhcCCCCeech-----hchHhHH--hhCCCeEEEEcCHHHHh-hhhHHHH
Q 046601           89 LIAENLWSFLEKLGACYSVIPCHIYRIWHDEVSCFVPFLHV-----TKSKPLE--VRSPLGIHVLMTNGILT-AGVLKLC  160 (233)
Q Consensus        89 ~I~~~l~~~Le~~Gad~IVIaCNTAH~~~del~~~vPii~i-----~tv~~~~--~~~~~rVGVLAT~gTi~-sglY~~~  160 (233)
                      +..+...+.++..|+|+|+-.=.||.+.-+.  +++|||.|     ...+.++  +...++|||++=+.++. ...+++.
T Consensus        51 ~~v~~~~~~~~~~~~dviIsrG~ta~~i~~~--~~iPVv~i~~s~~Dil~al~~a~~~~~~iavv~~~~~~~~~~~~~~~  128 (538)
T PRK15424         51 KAVTYIRKRLATERCDAIIAAGSNGAYLKSR--LSVPVILIKPSGFDVMQALARARKLTSSIGVVTYQETIPALVAFQKT  128 (538)
T ss_pred             HHHHHHHHHHhhCCCcEEEECchHHHHHHhh--CCCCEEEecCCHhHHHHHHHHHHhcCCcEEEEecCcccHHHHHHHHH
Confidence            3333444467778999999999999876543  67899988     2222221  12367999998766542 2234444


Q ss_pred             HccccCcchhhhHHHHHHhcCCcHHHHHHHHHHHHHHhhCCCCEEEEc
Q 046601          161 YQIKATMEHTLIPAVDALNRKDVEGATNLLRRALQVLLARAVNIVILA  208 (233)
Q Consensus       161 l~~~~~q~~~v~~~I~~vk~G~~~~~~~~l~~~~~~l~~~gaD~vILG  208 (233)
                      +.-+-.+..        +      ...+..+..+..+.++|+++||-+
T Consensus       129 l~~~i~~~~--------~------~~~~e~~~~v~~lk~~G~~~vvG~  162 (538)
T PRK15424        129 FNLRIEQRS--------Y------VTEEDARGQINELKANGIEAVVGA  162 (538)
T ss_pred             hCCceEEEE--------e------cCHHHHHHHHHHHHHCCCCEEEcC
Confidence            331111111        0      012345566677888899988844

>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway

Probab=81.86  E-value=2.6  Score=37.91  Aligned_cols=32  Identities=25%  Similarity=0.343  Sum_probs=27.9

Q ss_pred             HHHHcCCcEEeeccchhhhhHHhhc--CCCCeech
Q 046601           97 FLEKLGACYSVIPCHIYRIWHDEVS--CFVPFLHV  129 (233)
Q Consensus        97 ~Le~~Gad~IVIaCNTAH~~~del~--~~vPii~i  129 (233)
                      .++++||++++++|-+. ....++.  +++|+|+|
T Consensus       166 a~~~AGA~~i~lE~v~~-~~~~~i~~~v~iP~igi  199 (254)
T cd06557         166 ALEEAGAFALVLECVPA-ELAKEITEALSIPTIGI  199 (254)
T ss_pred             HHHHCCCCEEEEcCCCH-HHHHHHHHhCCCCEEEe
Confidence            88999999999999975 4566666  89999999

Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.

>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B

Probab=81.20  E-value=3.7  Score=39.65  Aligned_cols=48  Identities=15%  Similarity=0.314  Sum_probs=37.4

Q ss_pred             HHHHHHHHHHHcCCcEEeec--cchhhhh----HHhhc-CCCCeechhchHhHHh
Q 046601           90 IAENLWSFLEKLGACYSVIP--CHIYRIW----HDEVS-CFVPFLHVTKSKPLEV  137 (233)
Q Consensus        90 I~~~l~~~Le~~Gad~IVIa--CNTAH~~----~del~-~~vPii~i~tv~~~~~  137 (233)
                      ....+.+.|++.|||++++.  |-|-|..    ..++. ..+|++||.++.++..
T Consensus       324 ~g~eIa~~Lk~dgVDAvILtstCgtCtrcga~m~keiE~~GIPvV~i~~~~pI~~  378 (431)
T TIGR01917       324 FAKEFSKELLAAGVDAVILTSTUGTCTRCGATMVKEIERAGIPVVHICTVTPIAL  378 (431)
T ss_pred             HHHHHHHHHHHcCCCEEEEcCCCCcchhHHHHHHHHHHHcCCCEEEEeechhHHH
Confidence            44456669999999999886  8888885    46777 8999999966666654

Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.

>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed

Probab=81.10  E-value=2.8  Score=37.89  Aligned_cols=32  Identities=25%  Similarity=0.343  Sum_probs=28.0

Q ss_pred             HHHHcCCcEEeeccchhhhhHHhhc--CCCCeech
Q 046601           97 FLEKLGACYSVIPCHIYRIWHDEVS--CFVPFLHV  129 (233)
Q Consensus        97 ~Le~~Gad~IVIaCNTAH~~~del~--~~vPii~i  129 (233)
                      .++++||++|+++|-.. ....++.  +++|+|+|
T Consensus       169 a~~eAGA~~i~lE~v~~-~~~~~i~~~l~iP~igi  202 (264)
T PRK00311        169 ALEEAGAFALVLECVPA-ELAKEITEALSIPTIGI  202 (264)
T ss_pred             HHHHCCCCEEEEcCCCH-HHHHHHHHhCCCCEEEe
Confidence            88999999999999976 4666666  89999999

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	233
3s81_A	268	Putative aspartate racemase; structural genomics,	1e-10
1jfl_A	228	Aspartate racemase; alpha-beta structure, HOMO-dim	3e-08
3ojc_A	231	Putative aspartate/glutamate racemase; structural	3e-07
2zsk_A	226	PH1733, 226AA long hypothetical aspartate racemase	9e-06

>3s81_A Putative aspartate racemase; structural genomics, center for structural genomics of infec diseases, csgid, alpha beta fold, cytosol; 1.80A {Salmonella enterica subsp} PDB: 3s7z_A Length = 268

 Score = 58.9 bits (142), Expect = 1e-10
 Identities = 30/149 (20%), Positives = 56/149 (37%), Gaps = 12/149 (8%)

Query: 97  FLEKLGACYSVIPCHIYRIWHDEV--SCFVPFLHVTKSKPLEVRSPLGIHVLM-TNGILT 153
            LE  GA   VIPC+    W D++        + +  +   ++        L+ TN  L 
Sbjct: 94  MLEDAGAECIVIPCNTAHYWFDDLQNVAKARMISILDATLGDIPPSARHVGLLATNATLA 153

Query: 154 AGVLKLCYQIK--------ATMEHTLIPAVDALNRKDVEGATNLLRRALQVLLARAVNIV 205
            G+ +     +           +  ++ A+  L R D   A  LL   +  L+AR    +
Sbjct: 154 TGLYQKKALARGLTLIQPEDAGQALVMQAIYTLKRGDKTAAQALLLPQIDSLIARGAQAI 213

Query: 206 ILASNDILDLLPPDD-PLFNKCIDPMDAL 233
           I+   +I  ++   +  +    ID   +L
Sbjct: 214 IMGCTEIPLIVAGHERAIACPMIDSTASL 242

>1jfl_A Aspartate racemase; alpha-beta structure, HOMO-dimer, homologous domains, isomer; 1.90A {Pyrococcus horikoshii} SCOP: c.78.2.1 c.78.2.1 PDB: 2dx7_A* 1iu9_A Length = 228

 Score = 52.0 bits (124), Expect = 3e-08
 Identities = 24/150 (16%), Positives = 60/150 (40%), Gaps = 14/150 (9%)

Query: 97  FLEKLGACYSVIPCHIYRIWHDEVSCFVPFLHVTKSKPLEVRSPLG----IHVLMTNGIL 152
            LE+ GA + ++PC+    + +++   +    ++  +    +          +L T G +
Sbjct: 69  RLEECGADFIIMPCNTAHAFVEDIRKAIKIPIISMIEETAKKVKELGFKKAGLLATTGTI 128

Query: 153 TAGV---------LKLCYQIKATMEHTLIPAVDALNRKDVEGATNLLRRALQVLLARAVN 203
            +GV         +++    +   +  +    + +   +++    LL +  ++L  R   
Sbjct: 129 VSGVYEKEFSKYGVEIMTPTEDEQKDVMRGIYEGVKAGNLKLGRELLLKTAKILEERGAE 188

Query: 204 IVILASNDILDLLPPDDPLFNKCIDPMDAL 233
            +I    ++  +L  DD      IDPMD +
Sbjct: 189 CIIAGCTEVSVVLKQDDLKV-PLIDPMDVI 217

>3ojc_A Putative aspartate/glutamate racemase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha beta; 1.75A {Yersinia pestis} Length = 231

 Score = 48.5 bits (115), Expect = 3e-07
 Identities = 26/152 (17%), Positives = 54/152 (35%), Gaps = 16/152 (10%)

Query: 97  FLEKLGACYSVIPCHIYRIWHDEV--SCFVPFLHVTKSKPLEVRSP--LGIHVLMTNGIL 152
            L+  GA   V+  +      D++  +C +P LH+  +  ++++      I +L T   +
Sbjct: 71  SLKHAGAEVIVVCTNTMHKVADDIEAACGLPLLHIADATAVQIKQQGIDKIGLLGTRYTM 130

Query: 153 TAGV----------LKLCYQIKATMEHTLIPAVDALNRKDV-EGATNLLRRALQVLLARA 201
             G           +++        E       + L    + E + +  RR ++ L A+ 
Sbjct: 131 EQGFYRGRLTEKHGIEVITPDDTDREAVNRIIYEELCLGIISETSRDAYRRVIKKLEAQG 190

Query: 202 VNIVILASNDILDLLPPDDPLFNKCIDPMDAL 233
           V  +I    +I  L+   D       D     
Sbjct: 191 VQGIIFGCTEITLLVNAQDASV-PVFDTTAIH 221

>2zsk_A PH1733, 226AA long hypothetical aspartate racemase; alpha/beta fold, unknown function; 2.55A {Pyrococcus horikoshii} Length = 226

 Score = 44.3 bits (104), Expect = 9e-06
 Identities = 22/150 (14%), Positives = 47/150 (31%), Gaps = 14/150 (9%)

Query: 97  FLEKLGACYSVIPCHIYRIWHDEVSCFVPFLHVTKSKP----LEVRSPLGIHVLMTNGIL 152
            LE+ GA       +   +  D+V   V    V+        +  R    + +L T   +
Sbjct: 68  ALERAGAELIAFAANTPHLVFDDVQREVNVPMVSIIDAVAEEILKRGVRKVLLLGTKTTM 127

Query: 153 TAGV---------LKLCYQIKATMEHTLIPAVDALNRKDVEGATNLLRRALQVLLARAVN 203
           TA           L++        E       + L   +++    ++R   +   +  + 
Sbjct: 128 TADFYIKTLEEKGLEVVVPNDEEKEELNRIIFEELAFGNLKNKEWIVRLIEKYRESEGIE 187

Query: 204 IVILASNDILDLLPPDDPLFNKCIDPMDAL 233
            VIL   ++   +   D    +  D  +  
Sbjct: 188 GVILGCTELPLAIKQGDVSV-EVFDSAEIH 216

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	233
3s81_A	268	Putative aspartate racemase; structural genomics,	100.0
3ojc_A	231	Putative aspartate/glutamate racemase; structural	100.0
1jfl_A	228	Aspartate racemase; alpha-beta structure, HOMO-dim	100.0
2zsk_A	226	PH1733, 226AA long hypothetical aspartate racemase	100.0
3ist_A	269	Glutamate racemase; structural genomics, cell WALL	99.97
3out_A	268	Glutamate racemase; structural genomics, center fo	99.97
3uhf_A	274	Glutamate racemase; structural genomics, center fo	99.97
2jfn_A	285	Glutamate racemase; cell WALL, isomerase, cell sha	99.96
1zuw_A	272	Glutamate racemase 1; (R)-glutamate, peptidoglycan	99.96
2gzm_A	267	Glutamate racemase; enzyme, isomerase; HET: DGL; 1	99.95
2jfq_A	286	Glutamate racemase; cell WALL, isomerase, cell sha	99.95
2dwu_A	276	Glutamate racemase; isomerase; HET: DGL; 1.60A {Ba	99.95
2vvt_A	290	Glutamate racemase; isomerase, peptidoglycan synth	99.95
2jfz_A	255	Glutamate racemase; cell WALL, isomerase, cell sha	99.94
2oho_A	273	Glutamate racemase; isomerase; 2.25A {Streptococcu	99.94
1b73_A	254	Glutamate racemase; isomerase; 2.30A {Aquifex pyro	99.93
3qvl_A	245	Putative hydantoin racemase; isomerase; HET: 5HY;	99.87
2eq5_A	228	228AA long hypothetical hydantoin racemase; struct	99.86
3ixl_A	240	Amdase, arylmalonate decarboxylase; enantioselecti	99.75
2xed_A	273	Putative maleate isomerase; nicotinic acid catabol	99.73
2dgd_A	223	223AA long hypothetical arylmalonate decarboxylas;	99.7
3ojc_A	231	Putative aspartate/glutamate racemase; structural	93.42
2zsk_A	226	PH1733, 226AA long hypothetical aspartate racemase	88.2
2pju_A	225	Propionate catabolism operon regulatory protein; s	86.45
2q5c_A	196	NTRC family transcriptional regulator; structural	84.85
3vav_A	275	3-methyl-2-oxobutanoate hydroxymethyltransferase;	83.45
1jfl_A	228	Aspartate racemase; alpha-beta structure, HOMO-dim	82.41
3dah_A	319	Ribose-phosphate pyrophosphokinase; pyrophosphoki	80.88
3qvl_A	245	Putative hydantoin racemase; isomerase; HET: 5HY;	80.8

>3s81_A Putative aspartate racemase; structural genomics, center for structural genomics of infec diseases, csgid, alpha beta fold, cytosol; 1.80A {Salmonella enterica subsp} PDB: 3s7z_A

Probab=100.00  E-value=1.2e-38  Score=283.56  Aligned_cols=169  Identities=22%  Similarity=0.310  Sum_probs=146.1

Q ss_pred             ccCCCCCCceEEeeCchh---hhhhhcCCCCCCCCCCCcchhhhhhHHHHHHHHHH---HHHHcCCcEEeeccchhhhhH
Q 046601           44 LLQTDESGKFLVGSNPVL---SKDLLSHERNSLPSLNGRSDLLKLEHALIAENLWS---FLEKLGACYSVIPCHIYRIWH  117 (233)
Q Consensus        44 ~~~Dqeh~~~iv~~~p~i---t~~il~~~~~p~~~~~~~~~~~~~~~~~I~~~l~~---~Le~~Gad~IVIaCNTAH~~~  117 (233)
                      .+.||+|+|+++.|+|+|   ++++.+++++|.+                  .+.+   +|+++|||+|||||||||+++
T Consensus        53 ~~~D~~h~p~~~~s~~~i~~r~~~~~~~g~~~~~------------------~l~~~~~~L~~~Gad~IVIaCNTah~~l  114 (268)
T 3s81_A           53 ASCDQQHIPLIVSSIPDIPDRTACLLSGGPSPYR------------------YLERYLHMLEDAGAECIVIPCNTAHYWF  114 (268)
T ss_dssp             CSSGGGSCCEEEEECTTSCCHHHHHHHCCCCSHH------------------HHHHHHHHHHHTTCSEEECSCSGGGGGH
T ss_pred             hhcCCCCCCEEEeccCCHHHHHHHHHhCCchHHH------------------HHHHHHHHHHHcCCCEEEEeCCCHHHHH
Confidence            458999999999999988   7899998888887                  5555   999999999999999999999


Q ss_pred             Hhhc--CCCCeech--hchHhHHhhCCCeEEEEcCHHHHhhhhHHHHHcc---------ccCcchhhhHHHHHHhcCCcH
Q 046601          118 DEVS--CFVPFLHV--TKSKPLEVRSPLGIHVLMTNGILTAGVLKLCYQI---------KATMEHTLIPAVDALNRKDVE  184 (233)
Q Consensus       118 del~--~~vPii~i--~tv~~~~~~~~~rVGVLAT~gTi~sglY~~~l~~---------~~~q~~~v~~~I~~vk~G~~~  184 (233)
                      ++++  +++||+||  ++++++. .+.+|||||||++|+++++|++.++.         .+.++. +++.|+.+|+|..+
T Consensus       115 ~~lr~~~~iPvigiiea~~~aa~-~~~~rVgVLaT~~T~~s~~y~~~l~~~g~~~~v~~~~~~~~-v~~~I~~ve~g~~~  192 (268)
T 3s81_A          115 DDLQNVAKARMISILDATLGDIP-PSARHVGLLATNATLATGLYQKKALARGLTLIQPEDAGQAL-VMQAIYTLKRGDKT  192 (268)
T ss_dssp             HHHHHHCSSEEECHHHHHHHTSC-TTCCEEEEECCHHHHHTTTTHHHHHHHTCEEECCCHHHHHH-HHHHHHHHHTTCHH
T ss_pred             HHHHHHCCCCEEcccHHHHHHHH-hcCCcEEEEechHHhhHHHHHHHHHHcCCceEecCcccHHH-HHHHHHHHHcCCch
Confidence            9999  89999999  5666565 56889999999999999999999981         122333 77889999999876


Q ss_pred             HHHHHHHHHHHHHhhCCCCEEEEcCCccccCCCC-CCCCCCeEecCccc
Q 046601          185 GATNLLRRALQVLLARAVNIVILASNDILDLLPP-DDPLFNKCIDPMDA  232 (233)
Q Consensus       185 ~~~~~l~~~~~~l~~~gaD~vILGCTElPll~~~-~~~~~v~iIDp~~~  232 (233)
                      ..++.+++++++|.++|+|+|||||||||++.+. ....++++|||+++
T Consensus       193 ~~~~~l~~~l~~l~~~g~d~vILGCTh~pll~~~l~~~~~v~viDs~~~  241 (268)
T 3s81_A          193 AAQALLLPQIDSLIARGAQAIIMGCTEIPLIVAGHERAIACPMIDSTAS  241 (268)
T ss_dssp             HHHHHHHHHHHHHHHTTCSEEEECSTTHHHHHTTTGGGSSSCEEEHHHH
T ss_pred             hHHHHHHHHHHHHHhCCCCEEEECccCHHHHHHHHhcCCCCeEEccHHH
Confidence            6789999999999999999999999999999876 33447899999865

>3ojc_A Putative aspartate/glutamate racemase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha beta; 1.75A {Yersinia pestis}

Probab=100.00  E-value=4.2e-36  Score=261.26  Aligned_cols=171  Identities=16%  Similarity=0.122  Sum_probs=136.8

Q ss_pred             cccCCCCCCceEEeeCchh---hhhhhcCCCCCCCCCCCcchhhhhhHHHHHHHHHH---HHHHcCCcEEeeccchhhhh
Q 046601           43 FLLQTDESGKFLVGSNPVL---SKDLLSHERNSLPSLNGRSDLLKLEHALIAENLWS---FLEKLGACYSVIPCHIYRIW  116 (233)
Q Consensus        43 ~~~~Dqeh~~~iv~~~p~i---t~~il~~~~~p~~~~~~~~~~~~~~~~~I~~~l~~---~Le~~Gad~IVIaCNTAH~~  116 (233)
                      ....||+|.|.++.+++.+   ++++.++++                 +++...+.+   +|+++|||+|||||||||++
T Consensus        28 ~~~~~~~h~~~~~~~s~~~~~~~~~~~~~~~-----------------~~~~~~l~~~~~~L~~~g~~~iviaCNTa~~~   90 (231)
T 3ojc_A           28 KAQLGGLHSAKIILYSVDFHEIEQLQAKGDW-----------------QTAAQLLSNAAISLKHAGAEVIVVCTNTMHKV   90 (231)
T ss_dssp             HHHHCTTCCCCEEEEECCHHHHHHHHHTTCH-----------------HHHHHHHHHHHHHHHHHTCCEEEECSSGGGGG
T ss_pred             HHhcCCCCCccceeeCCChhhHHHHHHCCCh-----------------hHHHHHHHHHHHHHHhcCCCEEEEeCCchHHH
Confidence            4567999987666555555   455554432                 233335555   99999999999999999999


Q ss_pred             HHhhc--CCCCeech--hchHhHHhhCCCeEEEEcCHHHHhhhhHHHHHccc----------cCcchhhhHHHHH-HhcC
Q 046601          117 HDEVS--CFVPFLHV--TKSKPLEVRSPLGIHVLMTNGILTAGVLKLCYQIK----------ATMEHTLIPAVDA-LNRK  181 (233)
Q Consensus       117 ~del~--~~vPii~i--~tv~~~~~~~~~rVGVLAT~gTi~sglY~~~l~~~----------~~q~~~v~~~I~~-vk~G  181 (233)
                      +++++  +++||+||  ++++++...+.+|||||||++|+++++|++.++..          +.++. +++.||+ ++.|
T Consensus        91 ~~~l~~~~~iPvi~i~~~~~~~a~~~~~~rVgvLaT~~T~~s~~y~~~l~~~~g~~v~~p~~~~~~~-v~~~I~~~~~~g  169 (231)
T 3ojc_A           91 ADDIEAACGLPLLHIADATAVQIKQQGIDKIGLLGTRYTMEQGFYRGRLTEKHGIEVITPDDTDREA-VNRIIYEELCLG  169 (231)
T ss_dssp             HHHHHHHHCSCBCCHHHHHHHHHHHTTCCEEEEESCHHHHHSTTTHHHHHHTTCCEEECCCHHHHHH-HHHHHHHTGGGT
T ss_pred             HHHHHHhCCCCEeccHHHHHHHHHHcCCCEEEEEcCHHHhhchHHHHHHHhcCCCEEEecCHHHHHH-HHHHHHHHHHcC
Confidence            99999  89999998  77777777668999999999999999999998722          12333 6777886 8888


Q ss_pred             Cc-HHHHHHHHHHHHHHhhCCCCEEEEcCCccccCCCCCCCCCCeEecCccc
Q 046601          182 DV-EGATNLLRRALQVLLARAVNIVILASNDILDLLPPDDPLFNKCIDPMDA  232 (233)
Q Consensus       182 ~~-~~~~~~l~~~~~~l~~~gaD~vILGCTElPll~~~~~~~~v~iIDp~~~  232 (233)
                      .. +..++.+.+++++|.++|+|+|||||||||++.+.. ..++++|||+++
T Consensus       170 ~~~~~~~~~~~~~~~~l~~~g~d~vILGCTe~pll~~~~-~~~v~viDs~~~  220 (231)
T 3ojc_A          170 IISETSRDAYRRVIKKLEAQGVQGIIFGCTEITLLVNAQ-DASVPVFDTTAI  220 (231)
T ss_dssp             CCCHHHHHHHHHHHHHHHHTTCSCEEECSGGGGGTCCGG-GCSSCEEEHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHhcccc-cCCCcEEchHHH
Confidence            75 567889999999999999999999999999999773 357899999875

>1jfl_A Aspartate racemase; alpha-beta structure, HOMO-dimer, homologous domains, isomer; 1.90A {Pyrococcus horikoshii} SCOP: c.78.2.1 c.78.2.1 PDB: 2dx7_A* 1iu9_A

Probab=100.00  E-value=4e-36  Score=258.97  Aligned_cols=169  Identities=20%  Similarity=0.354  Sum_probs=144.5

Q ss_pred             ccCCCCCCceEEeeCchh---hhhhhcCCCCCCCCCCCcchhhhhhHHHHHHHHHH---HHHHcCCcEEeeccchhhhhH
Q 046601           44 LLQTDESGKFLVGSNPVL---SKDLLSHERNSLPSLNGRSDLLKLEHALIAENLWS---FLEKLGACYSVIPCHIYRIWH  117 (233)
Q Consensus        44 ~~~Dqeh~~~iv~~~p~i---t~~il~~~~~p~~~~~~~~~~~~~~~~~I~~~l~~---~Le~~Gad~IVIaCNTAH~~~  117 (233)
                      ...||+|+|+++.|+|++   +.++.++.++|.+                  .+.+   +|+++|+|+|||||||+|+++
T Consensus        28 ~~~d~~~~~~~~~~~~~i~~r~~~~~~~~~~~~~------------------~l~~~~~~l~~~g~d~iviaCnTa~~~~   89 (228)
T 1jfl_A           28 AKRDQEHPKVIIFNNPQIPDRTAYILGKGEDPRP------------------QLIWTAKRLEECGADFIIMPCNTAHAFV   89 (228)
T ss_dssp             CSSGGGSCCEEEEECTTSCCHHHHHTTSSCCCHH------------------HHHHHHHHHHHHTCSEEECSCTGGGGGH
T ss_pred             hhcCCccCcEeEEeCCCHHHHHHHHHcCCchHHH------------------HHHHHHHHHHHcCCCEEEEcCccHHHHH
Confidence            458999999999999987   7888887777777                  6655   999999999999999999999


Q ss_pred             Hhhc--CCCCeech--hchHhHHhhCCCeEEEEcCHHHHhhhhHHHHHccc---------cCcchhhhHHHH-HHhcCCc
Q 046601          118 DEVS--CFVPFLHV--TKSKPLEVRSPLGIHVLMTNGILTAGVLKLCYQIK---------ATMEHTLIPAVD-ALNRKDV  183 (233)
Q Consensus       118 del~--~~vPii~i--~tv~~~~~~~~~rVGVLAT~gTi~sglY~~~l~~~---------~~q~~~v~~~I~-~vk~G~~  183 (233)
                      ++++  +++||+||  ++++++...+.+|||||||++|+++++|++.++..         +.|+. +++.|+ .+|.|+.
T Consensus        90 ~~l~~~~~iPvi~i~~~~~~~a~~~~~~rigvlaT~~T~~~~~y~~~l~~~g~~v~~~~~~~~~~-~~~~i~~~~~~g~~  168 (228)
T 1jfl_A           90 EDIRKAIKIPIISMIEETAKKVKELGFKKAGLLATTGTIVSGVYEKEFSKYGVEIMTPTEDEQKD-VMRGIYEGVKAGNL  168 (228)
T ss_dssp             HHHHHHCSSCBCCHHHHHHHHHHHTTCSEEEEECCHHHHHHTHHHHHHHHTTCEEECCCHHHHHH-HHHHHHTTGGGTCH
T ss_pred             HHHHHhCCCCEechHHHHHHHHHHcCCCeEEEEecHHHhhhhHHHHHHHHCCCeEEccCHHHHHH-HHHHHHHHHHcCCc
Confidence            9999  89999998  77877765468899999999999999999999821         12333 678888 5899986


Q ss_pred             HHHHHHHHHHHHHHhhCCCCEEEEcCCccccCCCCCCCCCCeEecCccc
Q 046601          184 EGATNLLRRALQVLLARAVNIVILASNDILDLLPPDDPLFNKCIDPMDA  232 (233)
Q Consensus       184 ~~~~~~l~~~~~~l~~~gaD~vILGCTElPll~~~~~~~~v~iIDp~~~  232 (233)
                      +..++.+.++++++.++|+|+|||||||||++.+... .++++|||+++
T Consensus       169 ~~~~~~l~~~~~~l~~~g~d~iiLGCT~~p~l~~~~~-~~vpviDs~~~  216 (228)
T 1jfl_A          169 KLGRELLLKTAKILEERGAECIIAGCTEVSVVLKQDD-LKVPLIDPMDV  216 (228)
T ss_dssp             HHHHHHHHHHHHHHHHTTCSEEEECSHHHHHHCCGGG-CSSCEECHHHH
T ss_pred             hHHHHHHHHHHHHHHHCCcCEEEECCCChHhhhhhhc-CCCCEEChHHH
Confidence            6678899999999998999999999999999987633 57899999764

>2zsk_A PH1733, 226AA long hypothetical aspartate racemase; alpha/beta fold, unknown function; 2.55A {Pyrococcus horikoshii}

Probab=100.00  E-value=8.3e-34  Score=244.42  Aligned_cols=169  Identities=14%  Similarity=0.063  Sum_probs=136.3

Q ss_pred             ccCCCCCCceEEeeCchhhhh-hhcCCCCCCCCCCCcchhhhhhHHHHHHHHHH---HHHHcCCcEEeeccchhhhhHHh
Q 046601           44 LLQTDESGKFLVGSNPVLSKD-LLSHERNSLPSLNGRSDLLKLEHALIAENLWS---FLEKLGACYSVIPCHIYRIWHDE  119 (233)
Q Consensus        44 ~~~Dqeh~~~iv~~~p~it~~-il~~~~~p~~~~~~~~~~~~~~~~~I~~~l~~---~Le~~Gad~IVIaCNTAH~~~de  119 (233)
                      ...||+|.+.++.++|.+.+. ++.                 .+.+++...+.+   +|+++|+|+|||||||+|+++++
T Consensus        28 ~~~~~~~~~~i~~~~~~~~~~~~~~-----------------~~~~~~~~~l~~~~~~L~~~g~d~iviaCnTa~~~~~~   90 (226)
T 2zsk_A           28 EKFEKYFYPELIIYSINFKEFFQNP-----------------EGWEGRKKILINAAKALERAGAELIAFAANTPHLVFDD   90 (226)
T ss_dssp             HHSSTTCCCCEEEEECCTHHHHTCT-----------------THHHHHHHHHHHHHHHHHHHTCSEEEESSSGGGGGHHH
T ss_pred             HhcCCccCCeeEEeCCCHHHHHhhc-----------------CCcchHHHHHHHHHHHHHHcCCCEEEECCCcHHHHHHH
Confidence            458999999999999887322 211                 123444445555   99999999999999999999999


Q ss_pred             hc--CCCCeech--hchHhHHhhCCCeEEEEcCHHHHhhhhHHHHHcc---------ccCcchhhhHHHHH-HhcCCcHH
Q 046601          120 VS--CFVPFLHV--TKSKPLEVRSPLGIHVLMTNGILTAGVLKLCYQI---------KATMEHTLIPAVDA-LNRKDVEG  185 (233)
Q Consensus       120 l~--~~vPii~i--~tv~~~~~~~~~rVGVLAT~gTi~sglY~~~l~~---------~~~q~~~v~~~I~~-vk~G~~~~  185 (233)
                      ++  +++|++||  ++++++...+.+|||||||++|+++++|++.++.         ++.++. +++.||+ +|.|..+ 
T Consensus        91 l~~~~~iPvi~i~~a~~~~~~~~~~~rigvlaT~~T~~~~~y~~~l~~~g~~v~~~~~~~~~~-v~~~i~~~~~~g~~~-  168 (226)
T 2zsk_A           91 VQREVNVPMVSIIDAVAEEILKRGVRKVLLLGTKTTMTADFYIKTLEEKGLEVVVPNDEEKEE-LNRIIFEELAFGNLK-  168 (226)
T ss_dssp             HHHHCSSCBCCHHHHHHHHHHHTTCCEEEEESSTTTTSCHHHHHHHHTTTCEEECCCHHHHHH-HHHHHHHTGGGTCCT-
T ss_pred             HHHhCCCCEeccHHHHHHHHHHcCCCeEEEEeCHHHHhhhHHHHHHHHCCCEEEccCHHHHHH-HHHHHHHHHHcCchh-
Confidence            99  89999998  7777776656889999999999999999999972         122333 6778875 8888865 


Q ss_pred             HHHHHHHHHHHHhh-CCCCEEEEcCCccccCCCCCCCCCCeEecCccc
Q 046601          186 ATNLLRRALQVLLA-RAVNIVILASNDILDLLPPDDPLFNKCIDPMDA  232 (233)
Q Consensus       186 ~~~~l~~~~~~l~~-~gaD~vILGCTElPll~~~~~~~~v~iIDp~~~  232 (233)
                      .++.++++++++.+ +|+|+|||||||||++.+.. ..++++|||+++
T Consensus       169 ~~~~l~~~~~~l~~~~g~d~iiLGCT~~p~l~~~~-~~~vpviDs~~~  215 (226)
T 2zsk_A          169 NKEWIVRLIEKYRESEGIEGVILGCTELPLAIKQG-DVSVEVFDSAEI  215 (226)
T ss_dssp             THHHHHHHHHHHHHHSCCSEEEECSSSGGGTCCGG-GSSSEEEEHHHH
T ss_pred             HHHHHHHHHHHHHhhcCCCEEEECCCCHHHHhhcc-CCCCcEEChHHH
Confidence            67889999999998 89999999999999997763 346899999864

>3ist_A Glutamate racemase; structural genomics, cell WALL biogenesis/degradation, isomerase, peptidoglycan synthesis; HET: MSE; 1.65A {Listeria monocytogenes} PDB: 3hfr_A* 3isv_A*

Probab=99.97  E-value=2.1e-31  Score=236.98  Aligned_cols=150  Identities=17%  Similarity=0.108  Sum_probs=122.5

Q ss_pred             hhhhHHHHHHHHHH---HHHHcCCcEEeeccchhhhh-HHhhc--CCCCeech--hchHhHH-hhCCCeEEEEcCHHHHh
Q 046601           83 LKLEHALIAENLWS---FLEKLGACYSVIPCHIYRIW-HDEVS--CFVPFLHV--TKSKPLE-VRSPLGIHVLMTNGILT  153 (233)
Q Consensus        83 ~~~~~~~I~~~l~~---~Le~~Gad~IVIaCNTAH~~-~del~--~~vPii~i--~tv~~~~-~~~~~rVGVLAT~gTi~  153 (233)
                      |++++++|.+++.+   +|+++|||+|||||||||++ +++++  +++||+||  ++++.+. ..+.+|||||||++|++
T Consensus        45 G~ks~~~i~~~~~~~~~~L~~~g~~~IVIACNTa~~~al~~lr~~~~iPvigii~pa~~~A~~~~~~~~IGVLaT~~Ti~  124 (269)
T 3ist_A           45 GPRDKEEVAKFTWEMTNFLVDRGIKMLVIACNTATAAALYDIREKLDIPVIGVIQPGSRAALKATRNNKIGVLGTLGTVE  124 (269)
T ss_dssp             TTSCHHHHHHHHHHHHHHHHHTTCSEEEECCHHHHHHHHHHHHHHCSSCEEESHHHHHHHHHHHCSSSEEEEEECHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHCCCCEEEEeCCCccHHHHHHHHHhcCCCEEeecHHHHHHHHHHcCCCeEEEEeccchhh
Confidence            57888999998888   99999999999999999995 89999  89999996  6777654 34588999999999999


Q ss_pred             hhhHHHHHccccCcch----hhhHHHHHHhcCCc--HHHHHHHHHHHHHHhhCCCCEEEEcCCccccCCCCC---CCCCC
Q 046601          154 AGVLKLCYQIKATMEH----TLIPAVDALNRKDV--EGATNLLRRALQVLLARAVNIVILASNDILDLLPPD---DPLFN  224 (233)
Q Consensus       154 sglY~~~l~~~~~q~~----~v~~~I~~vk~G~~--~~~~~~l~~~~~~l~~~gaD~vILGCTElPll~~~~---~~~~v  224 (233)
                      +++|++.++......+    -....++.+|+|..  +.+++.+++++++|.++|+|++||||||||++.+..   .+.++
T Consensus       125 s~~y~~~i~~~~~~~~v~~~~~~~lV~~vE~g~~~~~~~~~~l~~~l~~l~~~g~D~iVLGCTh~pll~~~i~~~~~~~v  204 (269)
T 3ist_A          125 SMAYPTALKGLNRRVEVDSLACPKFVSVVESGEYKSAIAKKVVAESLLPLKSTKIDTVILGCTHYPLLKPIIENFMGDGV  204 (269)
T ss_dssp             HTHHHHHHHHHCTTCEEEEEECHHHHHHHHTTCTTSHHHHHHHHHHHGGGGGSCCCEEEECSTTGGGGHHHHHHHHCTTS
T ss_pred             HHHHHHHHHHhCCCCEEeccCCHHHHHHHHcCCCCCHHHHHHHHHHHHHHHhCCCCEEEECCCCHHHHHHHHHHHcCCCC
Confidence            9999999983211111    02234456888874  467889999999999999999999999999998751   23468


Q ss_pred             eEecCccc
Q 046601          225 KCIDPMDA  232 (233)
Q Consensus       225 ~iIDp~~~  232 (233)
                      ++|||+++
T Consensus       205 ~vIDs~~~  212 (269)
T 3ist_A          205 AVINSGEE  212 (269)
T ss_dssp             EEECTHHH
T ss_pred             eEECcHHH
Confidence            99999864

>3out_A Glutamate racemase; structural genomics, center for structural genomics of infec diseases, csgid, MURI, cell envelope; HET: MSE DGL; 1.65A {Francisella tularensis subsp}

Probab=99.97  E-value=3.1e-31  Score=235.69  Aligned_cols=148  Identities=17%  Similarity=0.101  Sum_probs=119.0

Q ss_pred             hhhhHHHHHHHHHH---HHHHcCCcEEeeccchhhh-hHHhhc--C-CCCeech--hchHhHHhhCCCeEEEEcCHHHHh
Q 046601           83 LKLEHALIAENLWS---FLEKLGACYSVIPCHIYRI-WHDEVS--C-FVPFLHV--TKSKPLEVRSPLGIHVLMTNGILT  153 (233)
Q Consensus        83 ~~~~~~~I~~~l~~---~Le~~Gad~IVIaCNTAH~-~~del~--~-~vPii~i--~tv~~~~~~~~~rVGVLAT~gTi~  153 (233)
                      |+++.++|.+.+.+   +|+++|||+|||||||||+ ++++++  + ++||+||  +++++  ..+.+|||||||++|++
T Consensus        47 G~~~~~~i~~~~~~~~~~L~~~g~~~iVIACNTa~~~al~~lr~~~~~iPvigiiep~~~~--~~~~~~IGVLaT~~Ti~  124 (268)
T 3out_A           47 GTKSRATIQKFAAQTAKFLIDQEVKAIIIACNTISAIAKDIVQEIAKAIPVIDVITAGVSL--VDNLNTVGVIATPATIN  124 (268)
T ss_dssp             TTSCHHHHHHHHHHHHHHHHHTTCSEEEECCHHHHHHHHHHHHHHHTTSCEEEHHHHHHHT--TTTCSEEEEEECHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHCCCCEEEEeCCChHHHHHHHHHHhcCCCCEEeccHHHHHH--hccCCeEEEEecCcccc
Confidence            45667777777777   9999999999999999998 579999  7 8999997  77777  44588999999999999


Q ss_pred             hhhHHHHHccccCcchh----hhHHHHHHhcCCc--HHHHHHHHHHHHHHhhCCCCEEEEcCCccccCCCC-CCCCCCeE
Q 046601          154 AGVLKLCYQIKATMEHT----LIPAVDALNRKDV--EGATNLLRRALQVLLARAVNIVILASNDILDLLPP-DDPLFNKC  226 (233)
Q Consensus       154 sglY~~~l~~~~~q~~~----v~~~I~~vk~G~~--~~~~~~l~~~~~~l~~~gaD~vILGCTElPll~~~-~~~~~v~i  226 (233)
                      +++|++.++......++    ....+..+|+|..  +..++.+++++++|.++|+|+|||||||||++.+. ..+.++++
T Consensus       125 s~~y~~~l~~~~~~~~V~~~~~~~lV~~vE~g~~~~~~~~~~l~~~l~~l~~~g~D~iILGCTh~pll~~~i~~~~~v~v  204 (268)
T 3out_A          125 SNAYALQIHKKNPNIEVYSNPCGLFVSMIEEGFVSGHIVELVAKEYLSYFHDKNIQALILGCTHYPIIKESIAKILDVKL  204 (268)
T ss_dssp             HTHHHHHHHHHCTTSEEEEEECTTHHHHHHTTCCSSHHHHHHHHHHHGGGTTSCCSEEEECSTTGGGGHHHHHHHCCSEE
T ss_pred             cHHHHHHHHHhCCCCEEecCCChHHHHHHHcCCcCCHHHHHHHHHHHHHHHhCCCCEEEECCCChHHHHHHHhcCCCCce
Confidence            99999999832111110    1223445778874  56788999999999999999999999999999876 22457899


Q ss_pred             ecCccc
Q 046601          227 IDPMDA  232 (233)
Q Consensus       227 IDp~~~  232 (233)
                      |||+++
T Consensus       205 iD~~~~  210 (268)
T 3out_A          205 IDPSLQ  210 (268)
T ss_dssp             ECCHHH
T ss_pred             echHHH
Confidence            999864

>3uhf_A Glutamate racemase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta sandwich fold, isomerase; HET: DGL; 1.83A {Campylobacter jejuni} PDB: 3uho_A* 3uhp_A

Probab=99.97  E-value=4.8e-31  Score=235.47  Aligned_cols=145  Identities=14%  Similarity=0.095  Sum_probs=118.8

Q ss_pred             hhhhhHHHHHHHHHH---HHHHcCCcEEeeccchhhhh-HHhhc--CCCCeech--hchHhHHhh---CCCeEEEEcCHH
Q 046601           82 LLKLEHALIAENLWS---FLEKLGACYSVIPCHIYRIW-HDEVS--CFVPFLHV--TKSKPLEVR---SPLGIHVLMTNG  150 (233)
Q Consensus        82 ~~~~~~~~I~~~l~~---~Le~~Gad~IVIaCNTAH~~-~del~--~~vPii~i--~tv~~~~~~---~~~rVGVLAT~g  150 (233)
                      -|+++.++|.+++.+   +|+++|||+|||||||||++ ++++|  +++||+||  ++++++.+.   +.+|||||||++
T Consensus        63 YG~ks~e~i~~~~~~~~~~L~~~g~d~IVIACNTa~~~al~~lr~~~~iPvigiiepa~~~a~~~~~t~~~~IGVLaT~~  142 (274)
T 3uhf_A           63 YGVKDKDTIIKFCLEALDFFEQFQIDMLIIACNTASAYALDALRAKAHFPVYGVIDAGVEATIKALHDKNKEILVIATKA  142 (274)
T ss_dssp             CTTSCHHHHHHHHHHHHHHHTTSCCSEEEECCHHHHHHSHHHHHHHCSSCEECSHHHHHHHHHHHHCCTTSCEEEEECHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHCCCCEEEEeCCChhHHHHHHHHHhcCCCEEcCCHHHHHHHHHhcccCCCeEEEEeccc
Confidence            367889999999988   99999999999999999987 89999  89999998  888887654   588999999999


Q ss_pred             HHhhhhHHHHHcccc-------CcchhhhHHHHHHhcCCc--HHHHHHHHHHHHHHhhCCCCEEEEcCCccccCCCCC--
Q 046601          151 ILTAGVLKLCYQIKA-------TMEHTLIPAVDALNRKDV--EGATNLLRRALQVLLARAVNIVILASNDILDLLPPD--  219 (233)
Q Consensus       151 Ti~sglY~~~l~~~~-------~q~~~v~~~I~~vk~G~~--~~~~~~l~~~~~~l~~~gaD~vILGCTElPll~~~~--  219 (233)
                      |++++.|++.+....       .... +++.   |++|..  +..++.++++++++.  |+|++||||||||++.+..  
T Consensus       143 Ti~s~~Y~~~l~~~~~~~V~~~~~~~-lV~~---IE~g~~~~~~~~~~~~~~l~~l~--g~D~iILGCTh~PlL~~~i~~  216 (274)
T 3uhf_A          143 TIKSEEYQKRLLSQGYTNINALATGL-FVPM---VEEGIFEGDFLQSAMEYYFKNIT--TPDALILACTHFPLLGRSLSK  216 (274)
T ss_dssp             HHHHTHHHHHHHTTTCCCEEEEECTT-HHHH---HHTTCCSSHHHHHHHHHHHTTCC--CCSEEEECSTTGGGGHHHHHH
T ss_pred             cccHHHHHHHHHHcCCceEEecCCHH-HHHH---HHcCCCCCHHHHHHHHHHHHHhc--CCCEEEECCCChHHHHHHHHH
Confidence            999999999998321       1122 3333   566764  456788888888877  9999999999999998762  


Q ss_pred             -CCCCCeEecCccc
Q 046601          220 -DPLFNKCIDPMDA  232 (233)
Q Consensus       220 -~~~~v~iIDp~~~  232 (233)
                       .+.++++|||+++
T Consensus       217 ~~~~~v~lIDs~~~  230 (274)
T 3uhf_A          217 YFGDKTKLIHSGDA  230 (274)
T ss_dssp             HHCTTCEEEEHHHH
T ss_pred             HcCCCCEEEcCHHH
Confidence             2346899999864

>2jfn_A Glutamate racemase; cell WALL, isomerase, cell shape, UDP- murnac-Ala, peptidoglycan biosynthesis, peptidoglycan synthesis; HET: GLU UMA; 1.9A {Escherichia coli}

Probab=99.96  E-value=3e-30  Score=230.47  Aligned_cols=183  Identities=15%  Similarity=0.150  Sum_probs=132.3

Q ss_pred             cccCCCccchhHHHhhhhhhhhhccCCcccccCCCCCCceEEeeCchhhhhhhcCCCCCCCCCCCcchhhhhhHHHHHHH
Q 046601           14 STLGSLSCCRSLQKTRLNLIQFWLFISSSFLLQTDESGKFLVGSNPVLSKDLLSHERNSLPSLNGRSDLLKLEHALIAEN   93 (233)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dqeh~~~iv~~~p~it~~il~~~~~p~~~~~~~~~~~~~~~~~I~~~   93 (233)
                      |.+|.++-.+.+.+..-+-    -+    .-..||+|.|+...+.+.+.+...                          .
T Consensus        29 SGvGGltv~~~i~~~lP~~----~~----iy~~D~~~~PyG~~s~~~i~~~~~--------------------------~   74 (285)
T 2jfn_A           29 SGVGGLSVYDEIRHLLPDL----HY----IYAFDNVAFPYGEKSEAFIVERVV--------------------------A   74 (285)
T ss_dssp             SSSTHHHHHHHHHHHSTTS----EE----EEEECTTTCCTTTSCHHHHHHHHH--------------------------H
T ss_pred             CCccHHHHHHHHHHhCCCC----Ce----EEeeccCCCCCccCCHHHHHHHHH--------------------------H
Confidence            5578888777776632111    01    112489899986666655533221                          2


Q ss_pred             HHH-HHHHcCCcEEeeccchhhh-hHHhhc--CCCCeech-hchHhHH-hhCCCeEEEEcCHHHHhhhhHHHHHccc---
Q 046601           94 LWS-FLEKLGACYSVIPCHIYRI-WHDEVS--CFVPFLHV-TKSKPLE-VRSPLGIHVLMTNGILTAGVLKLCYQIK---  164 (233)
Q Consensus        94 l~~-~Le~~Gad~IVIaCNTAH~-~~del~--~~vPii~i-~tv~~~~-~~~~~rVGVLAT~gTi~sglY~~~l~~~---  164 (233)
                      +.+ .+++.|||+|||||||+|. ++++++  +++||+|| ++++++. ..+.+|||||||++|+++++|++.++..   
T Consensus        75 i~~~ll~~~g~d~IviaCNTas~~~l~~lr~~~~iPVigi~~a~~~a~~~~~~~rIgVLaT~~T~~s~~y~~~l~~~g~~  154 (285)
T 2jfn_A           75 IVTAVQERYPLALAVVACNTASTVSLPALREKFDFPVVGVVPAIKPAARLTANGIVGLLATRGTVKRSYTHELIARFANE  154 (285)
T ss_dssp             HHHHHHHHSCCSEEEECCHHHHHHHHHHHHHHCSSCEECCCCCHHHHHHHCSSSEEEEEECTTGGGCHHHHHHHHHSCTT
T ss_pred             HHHHHHHhCCCCEEEEECccccHHHHHHHHHhCCCCEEehHHHHHHHHHhcCCCEEEEEEcHHHHhhHHHHHHHHHhCCC
Confidence            333 4466999999999999995 799999  89999999 6665543 3458899999999999999999999821   


Q ss_pred             -----cCcchhhhHHHHHHhcCCcHHHHHHHHHHHHHHhh--CCCCEEEEcCCccccCCCCC---CCCCCeEecCccc
Q 046601          165 -----ATMEHTLIPAVDALNRKDVEGATNLLRRALQVLLA--RAVNIVILASNDILDLLPPD---DPLFNKCIDPMDA  232 (233)
Q Consensus       165 -----~~q~~~v~~~I~~vk~G~~~~~~~~l~~~~~~l~~--~gaD~vILGCTElPll~~~~---~~~~v~iIDp~~~  232 (233)
                           ..+.. +++.|+..+.+. +..++.++++++++.+  .|+|+|||||||||++.+..   .+.++++|||+++
T Consensus       155 ~~v~~~~~~~-lv~~ie~~~~~~-~~~~~~l~~~l~~l~~~~~~~D~IVLGCTh~p~l~~~i~~~lg~~vpviDs~~a  230 (285)
T 2jfn_A          155 CQIEMLGSAE-MVELAEAKLHGE-DVSLDALKRILRPWLRMKEPPDTVVLGCTHFPLLQEELLQVLPEGTRLVDSGAA  230 (285)
T ss_dssp             SEEEEEECHH-HHHHHHHHHHTC-CCCHHHHHHHTHHHHTCSSCCSEEEECSTTGGGGHHHHHHHSCTTCEEECSHHH
T ss_pred             CEEeCCCCHH-HHHHHHhcccCC-HHHHHHHHHHHHHHHhcCCCCCEEEEeCCCcHHHHHHHHHhcCCCCEEECcHHH
Confidence                 12334 667787755554 3357788999999876  58999999999999987652   2336899999864

>1zuw_A Glutamate racemase 1; (R)-glutamate, peptidoglycan biosynthesi isomerase; HET: DGL; 1.75A {Bacillus subtilis}

Probab=99.96  E-value=3.5e-29  Score=222.19  Aligned_cols=185  Identities=12%  Similarity=0.084  Sum_probs=134.3

Q ss_pred             cccCCCccchhHHHhhhhhhhhhccCCcccccCCCCCCceEEeeCchhhhhhhcCCCCCCCCCCCcchhhhhhHHHHHHH
Q 046601           14 STLGSLSCCRSLQKTRLNLIQFWLFISSSFLLQTDESGKFLVGSNPVLSKDLLSHERNSLPSLNGRSDLLKLEHALIAEN   93 (233)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dqeh~~~iv~~~p~it~~il~~~~~p~~~~~~~~~~~~~~~~~I~~~   93 (233)
                      |.+|.|+--|.+.+..-+--        ..-..|+.|.|+-..+.+.+.+..                          ..
T Consensus        11 SGvGGltv~~~i~~~lP~~~--------~iy~~D~~~~PyG~~s~~~i~~~~--------------------------~~   56 (272)
T 1zuw_A           11 SGVGGLTVAKEIMRQLPKEN--------IIYVGDTKRCPYGPRPEEEVLQYT--------------------------WE   56 (272)
T ss_dssp             SSSTTHHHHHHHHHHSTTCC--------EEEEECGGGCCCSSSCHHHHHHHH--------------------------HH
T ss_pred             CCcchHHHHHHHHHhCCCCc--------EEEeccCCCCCCCCCCHHHHHHHH--------------------------HH
Confidence            56778887777765422110        112357777776444443332221                          13


Q ss_pred             HHHHHHH-cCCcEEeeccchhhh-hHHhhc--CCCCeech--hchHhHHh-hCCCeEEEEcCHHHHhhhhHHHHHccccC
Q 046601           94 LWSFLEK-LGACYSVIPCHIYRI-WHDEVS--CFVPFLHV--TKSKPLEV-RSPLGIHVLMTNGILTAGVLKLCYQIKAT  166 (233)
Q Consensus        94 l~~~Le~-~Gad~IVIaCNTAH~-~~del~--~~vPii~i--~tv~~~~~-~~~~rVGVLAT~gTi~sglY~~~l~~~~~  166 (233)
                      +.++|++ +|||+|||||||||+ ++++++  +++||+||  ++++++.. .+.+|||||||++|++++.|++.++....
T Consensus        57 ~~~~L~~~~g~d~iViACNTas~~~l~~lr~~~~iPVigiiepa~~~A~~~~~~~rIgVlaT~~T~~s~~y~~~i~~~~~  136 (272)
T 1zuw_A           57 LTNYLLENHHIKMLVIACNTATAIALDDIQRSVGIPVVGVIQPGARAAIKVTDNQHIGVIGTENTIKSNAYEEALLALNP  136 (272)
T ss_dssp             HHHHHHHHSCCSEEEECCHHHHHHHHHHHHHHCSSCEEESHHHHHHHHHHHCSSSEEEEEECHHHHHTTHHHHHHHHHCT
T ss_pred             HHHHHHhhcCCCEEEEeCchhhHHHHHHHHHHCCCCEEcccHHHHHHHHHhcCCCEEEEEEChhhhhhhHHHHHHHHhCC
Confidence            3448999 999999999999997 699999  89999996  78877654 45789999999999999999999983211


Q ss_pred             cchh----hhHHHHHHhcCCc--HHHHHHHHHHHHHHhhCCCCEEEEcCCccccCCCCCC---CCCCeEecCccc
Q 046601          167 MEHT----LIPAVDALNRKDV--EGATNLLRRALQVLLARAVNIVILASNDILDLLPPDD---PLFNKCIDPMDA  232 (233)
Q Consensus       167 q~~~----v~~~I~~vk~G~~--~~~~~~l~~~~~~l~~~gaD~vILGCTElPll~~~~~---~~~v~iIDp~~~  232 (233)
                      ..++    ....++.+++|..  +..++.++++++++.++|+|++||||||||++.+...   +.++++|||+++
T Consensus       137 ~~~v~~~~~~~~v~~ve~g~~~~~~~~~~l~~~l~~l~~~~~D~iVLGCTh~pll~~~i~~~~~~~v~vIDs~~~  211 (272)
T 1zuw_A          137 DLKVENLACPLLVPFVESGKFLDQTADEIVKTSLYPLKDTSIDSLILGCTHYPILKEAIQRYMGEHVNIISSGDE  211 (272)
T ss_dssp             TCEEEEEECTTHHHHHTSCCCCHHHHHHHHHHHHHHHHHSCCSEEEEESTTGGGGHHHHHHHHCTTSEEEEHHHH
T ss_pred             CCEEEeccCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHhcCCCEEEECccCHHHHHHHHHHHcCCCCeEECcHHH
Confidence            1110    2334566888875  5577889999999999999999999999999876621   447899999764

>2gzm_A Glutamate racemase; enzyme, isomerase; HET: DGL; 1.99A {Bacillus anthracis}

Probab=99.95  E-value=7e-29  Score=219.45  Aligned_cols=182  Identities=18%  Similarity=0.189  Sum_probs=134.4

Q ss_pred             cccCCCccchhHHHhhhhhhhhhccCCcccccCCCCCCceEEeeCchhhhhhhcCCCCCCCCCCCcchhhhhhHHHHHHH
Q 046601           14 STLGSLSCCRSLQKTRLNLIQFWLFISSSFLLQTDESGKFLVGSNPVLSKDLLSHERNSLPSLNGRSDLLKLEHALIAEN   93 (233)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dqeh~~~iv~~~p~it~~il~~~~~p~~~~~~~~~~~~~~~~~I~~~   93 (233)
                      |.+|.|+--+.+.+..-+.       .+-| ..|+.|.|+...+.                             +++.+.
T Consensus        11 SGvGGltv~~~i~~~lP~~-------~~iy-~~D~~~~Pyg~~s~-----------------------------~~i~~~   53 (267)
T 2gzm_A           11 SGVGGLTVAKELIRQLPKE-------RIIY-LGDTARCPYGPRSR-----------------------------EEVRQF   53 (267)
T ss_dssp             SSSTTHHHHHHHHHHCTTS-------CEEE-EECTTTCCCTTSCH-----------------------------HHHHHH
T ss_pred             CCccHHHHHHHHHHHCCCC-------CEEE-ecCCCCCCCCCCCH-----------------------------HHHHHH
Confidence            5678888888777542211       1111 35777777543333                             334444


Q ss_pred             HHH---HHHHcCCcEEeeccchhhh-hHHhhc--CCCCeech--hchHhHHh-hCCCeEEEEcCHHHHhhhhHHHHHccc
Q 046601           94 LWS---FLEKLGACYSVIPCHIYRI-WHDEVS--CFVPFLHV--TKSKPLEV-RSPLGIHVLMTNGILTAGVLKLCYQIK  164 (233)
Q Consensus        94 l~~---~Le~~Gad~IVIaCNTAH~-~~del~--~~vPii~i--~tv~~~~~-~~~~rVGVLAT~gTi~sglY~~~l~~~  164 (233)
                      +.+   +|+++|+|+|||||||+|. ++++++  +++||+||  ++++++.. .+.+|||||||++|++++.|++.++..
T Consensus        54 ~~~~~~~L~~~g~d~iviaCNTas~~~l~~lr~~~~iPvigi~ep~~~~A~~~~~~~rIgVlaT~~T~~~~~y~~~l~~~  133 (267)
T 2gzm_A           54 TWEMTEHLLDLNIKMLVIACNTATAVVLEEMQKQLPIPVVGVIHPGSRTALKVTNTYHVGIIGTIGTVKSGAYEEALKSI  133 (267)
T ss_dssp             HHHHHHHHHTTTCSEEEECCHHHHHHHHHHHHHHCSSCEEESHHHHHHHHHHHCSSCEEEEEECHHHHHHTHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCCEEEEeCchhhHHHHHHHHHhCCCCEEeecHHHHHHHHHccCCCEEEEEEChHHhccHHHHHHHHHh
Confidence            444   8999999999999999996 799999  89999996  88887754 357899999999999999999999832


Q ss_pred             cCcchh----hhHHHHHHhcCCc--HHHHHHHHHHHHHHhhCCCCEEEEcCCccccCCCCCC---CCCCeEecCccc
Q 046601          165 ATMEHT----LIPAVDALNRKDV--EGATNLLRRALQVLLARAVNIVILASNDILDLLPPDD---PLFNKCIDPMDA  232 (233)
Q Consensus       165 ~~q~~~----v~~~I~~vk~G~~--~~~~~~l~~~~~~l~~~gaD~vILGCTElPll~~~~~---~~~v~iIDp~~~  232 (233)
                      ....++    ....++.++.|..  +..++.++++++++.++|+|++||||||||++.+...   +.++++|||+++
T Consensus       134 ~~g~~v~~~~~~~~v~~ie~g~~~~~~~~~~l~~~~~~l~~~~~d~iVLGCTh~p~l~~~i~~~~~~~vpviDs~~~  210 (267)
T 2gzm_A          134 NNRVMVESLACPPFVELVESGNFESEMAYEVVRETLQPLKNTDIDTLILGCTHYPILGPVIKQVMGDKVQLISSGDE  210 (267)
T ss_dssp             CTTCEEEEEECTTHHHHHHTTCSSSHHHHHHHHHHHHHHHHSCCSEEEECSTTGGGGHHHHHHHHCTTSEEEEHHHH
T ss_pred             CCCCEEeccCCHHHHHHHhCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcccChHHHHHHHHHHcCCCCEEECcHHH
Confidence            111110    1234556888875  5678889999999999999999999999999876622   447899999764

>2jfq_A Glutamate racemase; cell WALL, isomerase, cell shape, peptidoglycan synthesis, peptidoglycan biosynthesis; HET: DGL; 2.15A {Staphylococcus aureus}

Probab=99.95  E-value=1e-28  Score=220.86  Aligned_cols=138  Identities=12%  Similarity=0.040  Sum_probs=111.0

Q ss_pred             HHHHHHcCCcEEeeccchhhh-hHHhhc--CCCCeech--hchHhHHh-hCCCeEEEEcCHHHHhhhhHHHHHccccCcc
Q 046601           95 WSFLEKLGACYSVIPCHIYRI-WHDEVS--CFVPFLHV--TKSKPLEV-RSPLGIHVLMTNGILTAGVLKLCYQIKATME  168 (233)
Q Consensus        95 ~~~Le~~Gad~IVIaCNTAH~-~~del~--~~vPii~i--~tv~~~~~-~~~~rVGVLAT~gTi~sglY~~~l~~~~~q~  168 (233)
                      .++|+++|+|+|||||||+|. ++++++  +++||+||  ++++++.. .+.+|||||||++|++++.|++.++......
T Consensus        77 ~~~L~~~g~d~IVIaCNTas~~~l~~lr~~~~iPVigi~e~a~~~A~~~~~~~rIgVLaT~~T~~~~~y~~~l~~~~~~~  156 (286)
T 2jfq_A           77 ARKLMEFDIKMLVIACNTATAVALEYLQKTLSISVIGVIEPGARTAIMTTRNQNVLVLGTEGTIKSEAYRTHIKRINPHV  156 (286)
T ss_dssp             HHHHTTSCCSEEEECCHHHHHHHHHHHHHHCSSEEEESHHHHHHHHHHHCSSSEEEEEECHHHHHHTHHHHHHHHHCTTC
T ss_pred             HHHHHHCCCCEEEEeCCchhHHHHHHHHHhCCCCEEeccHHHHHHHHHhcCCCEEEEEeChHHhcchHHHHHHHHhCCCC
Confidence            348999999999999999997 699999  89999997  77877654 4578999999999999999999998321111


Q ss_pred             hh----hhHHHHHHhcCCc--HHH-HHHHHHHHHHHhhCCCCEEEEcCCccccCCCCC---CCCCCeEecCccc
Q 046601          169 HT----LIPAVDALNRKDV--EGA-TNLLRRALQVLLARAVNIVILASNDILDLLPPD---DPLFNKCIDPMDA  232 (233)
Q Consensus       169 ~~----v~~~I~~vk~G~~--~~~-~~~l~~~~~~l~~~gaD~vILGCTElPll~~~~---~~~~v~iIDp~~~  232 (233)
                      ++    ....++.+++|..  +.. ++.++++++++.++|+|+|||||||||++.+..   .+.++++|||+++
T Consensus       157 ~v~~~~~~~~v~~ie~g~~~~~~~~~~~l~~~~~~l~~~g~D~IVLGCTh~p~l~~~i~~~l~~~vpvIDs~~a  230 (286)
T 2jfq_A          157 EVHGVACPGFVPLVEQMRYSDPTITSIVIHQTLKRWRNSESDTVILGCTHYPLLYKPIYDYFGGKKTVISSGLE  230 (286)
T ss_dssp             EEEEEECTTHHHHHHTTCTTCHHHHHHHHHHHHGGGTTCSCSEEEEESSSGGGGHHHHHHHTTTCSEEEEHHHH
T ss_pred             EEEecCCHHHHHHHHcCCCCCchhHHHHHHHHHHHHHhCCCCEEEEcCcCHHHHHHHHHHHcCCCCEEECcHHH
Confidence            10    2334566888874  556 888999999999889999999999999987652   2447899999764

>2dwu_A Glutamate racemase; isomerase; HET: DGL; 1.60A {Bacillus anthracis}

Probab=99.95  E-value=1.7e-28  Score=218.07  Aligned_cols=145  Identities=13%  Similarity=0.092  Sum_probs=113.6

Q ss_pred             HHHHHHHHH---HHHHcCCcEEeeccchhhh-hHHhhc--CCCCeech--hchHhHHh-hCCCeEEEEcCHHHHhhhhHH
Q 046601           88 ALIAENLWS---FLEKLGACYSVIPCHIYRI-WHDEVS--CFVPFLHV--TKSKPLEV-RSPLGIHVLMTNGILTAGVLK  158 (233)
Q Consensus        88 ~~I~~~l~~---~Le~~Gad~IVIaCNTAH~-~~del~--~~vPii~i--~tv~~~~~-~~~~rVGVLAT~gTi~sglY~  158 (233)
                      +++.+.+.+   +|+++|+|+|||||||+|. ++++++  +++||+||  ++++++.. .+.+|||||||++|++++.|+
T Consensus        52 ~~i~~~~~~~~~~L~~~g~d~IViACNTas~~~l~~lr~~~~iPVigiiep~~~~A~~~~~~~rIgVlaT~~T~~s~~y~  131 (276)
T 2dwu_A           52 EEVQSFVFEMVEFLKQFPLKALVVACNTAAAATLAALQEALSIPVIGVIHPGARAAIKVTKKGKIGVIGTVGTIQSNMYE  131 (276)
T ss_dssp             HHHHHHHHHHHHHHTTSCEEEEEECCHHHHHHHHHHHHHHCSSCEEESHHHHHHHHHHHCSSSEEEEEECHHHHHTTHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCCEEEEeCCcHHHHHHHHHHHHCCCCEEeccHHHHHHHHHhcCCCeEEEEeChhhhhhHHHH
Confidence            344444444   8999999999999999995 799999  89999996  78877654 457899999999999999999


Q ss_pred             HHHccccCcchh----hhHHHHHHhcCCc--HHHHHHHHHHHHHHhhCCCCEEEEcCCccccCCCCCC---CCCCeEecC
Q 046601          159 LCYQIKATMEHT----LIPAVDALNRKDV--EGATNLLRRALQVLLARAVNIVILASNDILDLLPPDD---PLFNKCIDP  229 (233)
Q Consensus       159 ~~l~~~~~q~~~----v~~~I~~vk~G~~--~~~~~~l~~~~~~l~~~gaD~vILGCTElPll~~~~~---~~~v~iIDp  229 (233)
                      +.++......++    ....++.+++|..  +..++.++++++++.++|+|+|||||||||++.+...   +.++++|||
T Consensus       132 ~~i~~~~~~~~v~~~~~~~~v~~ve~g~~~~~~~~~~l~~~l~~l~~~~~D~IVLGCTh~p~l~~~i~~~~~~~v~vIDs  211 (276)
T 2dwu_A          132 KALHELDTYLKVHSHACPTLATVVENRLEDTAYVTQQVKQALLPLTKEDIDTLILGCTHYPLLESYIKKELGEDVTIISS  211 (276)
T ss_dssp             HHHHHHCTTCEEEEEECTTHHHHHHHSTTCHHHHHHHHHHHHHHHHTSCCSEEEECSTTGGGGHHHHHHHHCTTSEEEEH
T ss_pred             HHHHHhCCCCEEEeeeCHHHHHHHHcCCcCCHHHHHHHHHHHHHHHhcCCCEEEECCCCHHHHHHHHHHHcCCCCeEECc
Confidence            998732111110    2234456888875  5577899999999998999999999999999877621   447899999


Q ss_pred             ccc
Q 046601          230 MDA  232 (233)
Q Consensus       230 ~~~  232 (233)
                      +++
T Consensus       212 ~~~  214 (276)
T 2dwu_A          212 AEE  214 (276)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            764

>2vvt_A Glutamate racemase; isomerase, peptidoglycan synthesis, cell WALL biogenesis/degradation, cell shape, benzyl purine, MURI inhibitor; HET: I24 DGL; 1.65A {Enterococcus faecalis} PDB: 2jfp_A* 2jfo_A* 2jfu_A 2jfv_A* 2jfw_A*

Probab=99.95  E-value=1.7e-28  Score=219.79  Aligned_cols=138  Identities=19%  Similarity=0.167  Sum_probs=111.2

Q ss_pred             HHHHHHcCCcEEeeccchhhh-hHHhhc--CCCCeech--hchHhHHh-hCCCeEEEEcCHHHHhhhhHHHHHccccCcc
Q 046601           95 WSFLEKLGACYSVIPCHIYRI-WHDEVS--CFVPFLHV--TKSKPLEV-RSPLGIHVLMTNGILTAGVLKLCYQIKATME  168 (233)
Q Consensus        95 ~~~Le~~Gad~IVIaCNTAH~-~~del~--~~vPii~i--~tv~~~~~-~~~~rVGVLAT~gTi~sglY~~~l~~~~~q~  168 (233)
                      .++|+++|||+|||||||+|+ ++++++  +++||+||  ++++++.. .+.+|||||||++|++++.|++.++......
T Consensus        79 ~~~L~~~g~d~IVIACNTas~~~l~~lr~~~~iPVigiiepa~~~A~~~~~~~rIgVLaT~~T~~s~~y~~~l~~~~~~~  158 (290)
T 2vvt_A           79 ADFLLKKRIKMLVIACNTATAVALEEIKAALPIPVVGVILPGARAAVKVTKNNKIGVIGTLGTIKSASYEIAIKSKAPAI  158 (290)
T ss_dssp             HHHHHTTTCSEEEECCHHHHHHHHHHHHHHCSSCEEESSHHHHHHHHHHCSSSEEEEEECHHHHHTTHHHHHHHTTCTTS
T ss_pred             HHHHHHCCCCEEEEeCcchhHHHHHHHHHhCCCCEEcccHHHHHHHHHhcCCCEEEEEeCcHhhhhHHHHHHHHHhCCCC
Confidence            348999999999999999995 599999  89999996  78877654 4578999999999999999999998321111


Q ss_pred             h----hhhHHHHHHhcCCc--HHHHHHHHHHHHHHhhCCCCEEEEcCCccccCCCCCC---CCCCeEecCccc
Q 046601          169 H----TLIPAVDALNRKDV--EGATNLLRRALQVLLARAVNIVILASNDILDLLPPDD---PLFNKCIDPMDA  232 (233)
Q Consensus       169 ~----~v~~~I~~vk~G~~--~~~~~~l~~~~~~l~~~gaD~vILGCTElPll~~~~~---~~~v~iIDp~~~  232 (233)
                      +    -....++.+++|..  +..++.++++++++.++|+|+|||||||||++.+...   +.++++|||+++
T Consensus       159 ~v~~~~~~~lv~~ve~g~~~~~~~~~~l~~~l~~l~~~g~D~IVLGCTh~p~l~~~i~~~l~~~vpvIDs~~a  231 (290)
T 2vvt_A          159 EVTSLACPKFVPIVESNQYRSSVAKKIVAETLQALQLKGLDTLILGCTHYPLLRPVIQNVMGSHVTLIDSGAE  231 (290)
T ss_dssp             EEEEEECTTHHHHHHTTCTTSHHHHHHHHHHHGGGTTSCCSEEEECSTTGGGGHHHHHHHHCTTCEEEEHHHH
T ss_pred             EEEeccCHHHHHHHHcCCCCCHHHHHHHHHHHHHHHhCCCCEEEECCcCHHHHHHHHHHHcCCCCeEECcHHH
Confidence            1    02334556888874  5678889999999998899999999999999877621   447899999764

>2jfz_A Glutamate racemase; cell WALL, isomerase, cell shape, peptidoglycan synthesis, peptidoglycan biosynthesis; HET: 003 DGL; 1.86A {Helicobacter pylori} PDB: 2jfx_A* 2jfy_A* 2w4i_A*

Probab=99.94  E-value=1.3e-27  Score=209.78  Aligned_cols=148  Identities=12%  Similarity=0.072  Sum_probs=113.4

Q ss_pred             hhhhHHHHHHHHHH---HHHHcCCcEEeeccchhhh-hHHhhc--CCCCeech--hchHhHHh---hCCCeEEEEcCHHH
Q 046601           83 LKLEHALIAENLWS---FLEKLGACYSVIPCHIYRI-WHDEVS--CFVPFLHV--TKSKPLEV---RSPLGIHVLMTNGI  151 (233)
Q Consensus        83 ~~~~~~~I~~~l~~---~Le~~Gad~IVIaCNTAH~-~~del~--~~vPii~i--~tv~~~~~---~~~~rVGVLAT~gT  151 (233)
                      |+++.+++.+.+.+   +|+++|+|+|||||||+|. ++++++  +++||+||  ++++++..   .+.+|||||||++|
T Consensus        40 g~~s~~~i~~~~~~~~~~L~~~g~d~iviaCNTa~~~~~~~lr~~~~iPvigii~~av~~A~~~~~~~~~rigVlaT~~T  119 (255)
T 2jfz_A           40 GTKDPTTIKQFGLEALDFFKPHEIELLIVACNTASALALEEMQKYSKIPIVGVIEPSILAIKRQVEDKNAPILVLGTKAT  119 (255)
T ss_dssp             TTSCHHHHHHHHHHHHHHHGGGCCSCEEECCHHHHHHTHHHHHHHCSSCEECSSHHHHHHHHHHCCCTTSCEEEEECHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHCCCCEEEEeCchhhHHHHHHHHHhCCCCEEeeeHHHHHHHHHhhcCCCCEEEEEECHHH
Confidence            34566777778777   8999999999999999996 799999  89999995  77776644   45789999999999


Q ss_pred             HhhhhHHHHHccccCcchh---hhH-HHHHHhcCCc--HHHHHHHHHHHHHHhhCCCCEEEEcCCccccCCCCCC---C-
Q 046601          152 LTAGVLKLCYQIKATMEHT---LIP-AVDALNRKDV--EGATNLLRRALQVLLARAVNIVILASNDILDLLPPDD---P-  221 (233)
Q Consensus       152 i~sglY~~~l~~~~~q~~~---v~~-~I~~vk~G~~--~~~~~~l~~~~~~l~~~gaD~vILGCTElPll~~~~~---~-  221 (233)
                      ++++.|++.++... ...+   -.+ ....+++|..  +..++.+++++++ .+.|+|++||||||||++.+...   + 
T Consensus       120 ~~~~~y~~~l~~~g-~~~v~~~~~~~lv~~ie~g~~~~~~~~~~l~~~~~~-~~~~~d~iILGCTh~p~l~~~i~~~~~~  197 (255)
T 2jfz_A          120 IQSNAYDNALKQQG-YLNISHLATSLFVPLIEESILEGELLETCMHYYFTP-LEILPEVIILGCTHFPLIAQKIEGYFMG  197 (255)
T ss_dssp             HHHTHHHHHHHHTT-CCCEEEEECTTHHHHHHTTCCSSHHHHHHHHHHHTT-CCSCCSEEEEESTTGGGGHHHHHHHHHH
T ss_pred             HhChHHHHHHHHcC-CCEEEecChHHHHHHHHhcccCCHHHHHHHHHHHhh-hcCCCCEEEEcCcChHHHHHHHHHHhCc
Confidence            99999999998322 1110   011 1233666653  4567788888888 66799999999999999876521   1 


Q ss_pred             -----CCCeEecCccc
Q 046601          222 -----LFNKCIDPMDA  232 (233)
Q Consensus       222 -----~~v~iIDp~~~  232 (233)
                           .++++|||+++
T Consensus       198 ~~~~~~~v~viDs~~~  213 (255)
T 2jfz_A          198 HFALPTPPLLIHSGDA  213 (255)
T ss_dssp             HSCCSSCCEEEEHHHH
T ss_pred             cccCCCCCEEECcHHH
Confidence                 35899999764

>2oho_A Glutamate racemase; isomerase; 2.25A {Streptococcus pyogenes m1 gas} PDB: 2ohg_A 2ohv_A*

Probab=99.94  E-value=2.3e-27  Score=210.27  Aligned_cols=144  Identities=18%  Similarity=0.190  Sum_probs=109.0

Q ss_pred             HHHHHHHHH---HHHHcCCcEEeeccchhhhh-HHhhc--CCCCeech--hchHhHHh-hCCCeEEEEcCHHHHhhhhHH
Q 046601           88 ALIAENLWS---FLEKLGACYSVIPCHIYRIW-HDEVS--CFVPFLHV--TKSKPLEV-RSPLGIHVLMTNGILTAGVLK  158 (233)
Q Consensus        88 ~~I~~~l~~---~Le~~Gad~IVIaCNTAH~~-~del~--~~vPii~i--~tv~~~~~-~~~~rVGVLAT~gTi~sglY~  158 (233)
                      +++...+.+   +|+++|+|+|||||||+|.+ +++++  +++||+||  ++++++.. .+.+|||||||++|++++.|+
T Consensus        57 ~~i~~~~~~~~~~L~~~g~d~iviaCNTas~~~l~~lr~~~~iPvigi~epa~~~A~~~~~~~rIgVlaT~~T~~~~~y~  136 (273)
T 2oho_A           57 KQIKEYTWELVNFLLTQNVKMIVFACNTATAVAWEEVKAALDIPVLGVVLPGASAAIKSTTKGQVGVIGTPMTVASDIYR  136 (273)
T ss_dssp             HHHHHHHHHHHHHHHTTTCSEEEECCHHHHHHHHHHHHHHCSSCEEESHHHHHHHHHHHCSSSEEEEEECHHHHHHTHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCCEEEEeCchHhHHHHHHHHHhCCCCEEeccHHHHHHHHHhcCCCeEEEEECchhhcchHHH
Confidence            444445555   89999999999999999965 89999  89999996  77777654 357899999999999999999


Q ss_pred             HHHccccCcchhh-h---HHHHHHhcCCc--HHHHHHHHHHHHHHhhCCCCEEEEcCCccccCCCCC-C--CCCCeEecC
Q 046601          159 LCYQIKATMEHTL-I---PAVDALNRKDV--EGATNLLRRALQVLLARAVNIVILASNDILDLLPPD-D--PLFNKCIDP  229 (233)
Q Consensus       159 ~~l~~~~~q~~~v-~---~~I~~vk~G~~--~~~~~~l~~~~~~l~~~gaD~vILGCTElPll~~~~-~--~~~v~iIDp  229 (233)
                      +.++.....-+++ .   .....+++|..  +..++.++++++++.++ +|+|||||||||++.+.. .  +.++++|||
T Consensus       137 ~~l~~~~~g~~v~~~~~~~~v~~ie~g~~~~~~~~~~l~~~~~~l~~~-~d~iVLGCTh~p~l~~~i~~~~~~~vpviDs  215 (273)
T 2oho_A          137 KKIQLLAPSIQVRSLACPKFVPIVESNEMCSSIAKKIVYDSLAPLVGK-IDTLVLGCTHYPLLRPIIQNVMGPSVKLIDS  215 (273)
T ss_dssp             HHHHHHCTTSEEEEEECTTHHHHHCC-----HHHHHHHHHHHTTTTTS-CSEEEECSTTGGGGHHHHHHHHCTTSEEEEH
T ss_pred             HHHHHhCCCCEEEecCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEcCCCHHHHHHHHHHHhCCCCEEECc
Confidence            9998321111101 1   12234778875  45688999999999888 999999999999987652 1  346899999


Q ss_pred             ccc
Q 046601          230 MDA  232 (233)
Q Consensus       230 ~~~  232 (233)
                      +++
T Consensus       216 ~~~  218 (273)
T 2oho_A          216 GAE  218 (273)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            764

>1b73_A Glutamate racemase; isomerase; 2.30A {Aquifex pyrophilus} SCOP: c.78.2.1 c.78.2.1 PDB: 1b74_A*

Probab=99.93  E-value=1.2e-27  Score=209.75  Aligned_cols=137  Identities=15%  Similarity=0.089  Sum_probs=107.0

Q ss_pred             HHHHHHHcCCcEEeeccchhhh-hHHhhc--CCCCeech--hchHhHHh-hCCCeEEEEcCHHHHhhhhHHHHHccccCc
Q 046601           94 LWSFLEKLGACYSVIPCHIYRI-WHDEVS--CFVPFLHV--TKSKPLEV-RSPLGIHVLMTNGILTAGVLKLCYQIKATM  167 (233)
Q Consensus        94 l~~~Le~~Gad~IVIaCNTAH~-~~del~--~~vPii~i--~tv~~~~~-~~~~rVGVLAT~gTi~sglY~~~l~~~~~q  167 (233)
                      ..++|+++|+|+|||||||+|. ++++++  +++|++||  ++++++.. .+.+|||||||++|+++++|++.++.....
T Consensus        54 ~~~~L~~~g~d~iviaCnTa~~~~~~~lr~~~~iPvigi~e~~~~~A~~~~~~~rigVlaT~~T~~~~~y~~~l~~~g~~  133 (254)
T 1b73_A           54 CAGFLKDKGVDIIVVACNTASAYALERLKKEINVPVFGVIEPGVKEALKKSRNKKIGVIGTPATVKSGAYQRKLEEGGAD  133 (254)
T ss_dssp             HHHHHHTTTCSEEEECCHHHHTTSHHHHHHHSSSCEEESHHHHHHHHHHHCSSCEEEEEECHHHHHHCHHHHHHHTTSCE
T ss_pred             HHHHHHHCCCCEEEEeCchhhHHHHHHHHHhCCCCEEeeeHHHHHHHHHccCCCEEEEEEChHHhhhHHHHHHHHcCCCE
Confidence            3348999999999999999995 799999  89999997  78877654 357899999999999999999999832111


Q ss_pred             ch--hhhHHHHHHhcCCc--HHHHHHHHHHHHHHhhCCCCEEEEcCCccccCCCCC---CCCCCeEecCccc
Q 046601          168 EH--TLIPAVDALNRKDV--EGATNLLRRALQVLLARAVNIVILASNDILDLLPPD---DPLFNKCIDPMDA  232 (233)
Q Consensus       168 ~~--~v~~~I~~vk~G~~--~~~~~~l~~~~~~l~~~gaD~vILGCTElPll~~~~---~~~~v~iIDp~~~  232 (233)
                      -.  -....++.++.|..  +..++.+.++++++.++ +|+|||||||||++.+..   .+ ++++|||+++
T Consensus       134 v~~~~~~~~v~~ie~g~~~~~~~~~~l~~~~~~l~~~-~d~IILGCT~~p~l~~~i~~~~~-~vpviDs~~~  203 (254)
T 1b73_A          134 VFAKACPLFAPLAEEGLLEGEITRKVVEHYLKEFKGK-IDTLILGCTHYPLLKKEIKKFLG-DAEVVDSSEA  203 (254)
T ss_dssp             EEEEECCCCTTTSCGGGGSGGGHHHHHHHHSTTTTTT-CSEEEECCCCTTCCHHHHHHHSC-SCEEECHHHH
T ss_pred             EEecCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHhc-CCEEEECccChHHHHHHHHHHcC-CCeEECCHHH
Confidence            00  01122334677753  45778899999999877 999999999999987652   23 7899999764

>3qvl_A Putative hydantoin racemase; isomerase; HET: 5HY; 1.82A {Klebsiella pneumoniae subsp} PDB: 3qvk_A* 3qvj_A

Probab=99.87  E-value=1.9e-22  Score=176.81  Aligned_cols=149  Identities=13%  Similarity=0.015  Sum_probs=105.6

Q ss_pred             cchhhhhhHHHHHHHHHH---HHHHcCCcEEeeccchhhhhHHhhc--CCCCeech--hchHhHHhhCCCeEEEEcCHHH
Q 046601           79 RSDLLKLEHALIAENLWS---FLEKLGACYSVIPCHIYRIWHDEVS--CFVPFLHV--TKSKPLEVRSPLGIHVLMTNGI  151 (233)
Q Consensus        79 ~~~~~~~~~~~I~~~l~~---~Le~~Gad~IVIaCNTAH~~~del~--~~vPii~i--~tv~~~~~~~~~rVGVLAT~gT  151 (233)
                      +++++..+.......+.+   .|++.|+|++||||||+|.+ +++|  +++||+||  ++++.+... ++||||+||.+|
T Consensus        43 ~~i~~~~d~~~a~~~l~~~~~~l~~~g~d~iviaCnt~~~l-~~lr~~~~iPvigi~e~~~~~a~~~-~~rigVlaT~~t  120 (245)
T 3qvl_A           43 PSIEGHFDEAIAAVGVLEQIRAGREQGVDGHVIASFGDPGL-LAARELAQGPVIGIAEAAMHMATMV-ATRFSIVTTLPR  120 (245)
T ss_dssp             SSCCSHHHHHHHHHHHHHHHHHHHHHTCSEEEEC-CCCTTH-HHHHHHCSSCEEEHHHHHHHHHHHH-CSCEEEEESCGG
T ss_pred             hhhcChhHHHHHHHHHHHHHHHHHHCCCCEEEEeCCChhHH-HHHHHHcCCCEECccHHHHHHHHHc-CCEEEEEEcchh
Confidence            466777777777766666   77899999999999999987 8998  89999998  666666555 589999999999


Q ss_pred             HhhhhHHHHHccccCcchh-hhHHH----HHHhcCCcHHHHHHHHHHHHHH-hhCCCCEEEEcCCccccCCCC-CCCCCC
Q 046601          152 LTAGVLKLCYQIKATMEHT-LIPAV----DALNRKDVEGATNLLRRALQVL-LARAVNIVILASNDILDLLPP-DDPLFN  224 (233)
Q Consensus       152 i~sglY~~~l~~~~~q~~~-v~~~I----~~vk~G~~~~~~~~l~~~~~~l-~~~gaD~vILGCTElPll~~~-~~~~~v  224 (233)
                      +. +.|++.++......++ -..+.    ..+.. ..+...+.+.+...++ .++|+|+|||||||||++.+. ....++
T Consensus       121 ~~-~~~~~~l~~~g~~~~~~~v~~~~~~~~~l~~-~~~~~~~~l~~~~~~~~~~~gad~IVLGCTh~p~l~~~i~~~~gV  198 (245)
T 3qvl_A          121 TL-IIARHLLHQYGFHQHCAALHAIDLPVLALED-GSGLAQEKVRERCIRALKEDGSGAIVLGSGGMATLAQQLTRELRV  198 (245)
T ss_dssp             GH-HHHHHHHHHHTCGGGEEEEEECCSCGGGGGS-SSSHHHHHHHHHHHHHHHHSCCSEEEECCGGGGGGHHHHHHHHTS
T ss_pred             HH-HHHHHHHHHcCCCCeEEEEeCCCCCHHHHcC-CcHHHHHHHHHHHHHHHHhcCCCEEEECCCChHHHHHHHHHHcCC
Confidence            86 8999998832211110 00000    01222 2234556666655554 458999999999999998765 222368


Q ss_pred             eEecCcc
Q 046601          225 KCIDPMD  231 (233)
Q Consensus       225 ~iIDp~~  231 (233)
                      ++|||..
T Consensus       199 pvID~~~  205 (245)
T 3qvl_A          199 PVIDGVS  205 (245)
T ss_dssp             CEECHHH
T ss_pred             eEEccHH
Confidence            9999875

>2eq5_A 228AA long hypothetical hydantoin racemase; structural genomics, NPPSFA, national project on P structural and functional analyses; 2.20A {Pyrococcus horikoshii}

Probab=99.86  E-value=1.4e-22  Score=173.43  Aligned_cols=128  Identities=16%  Similarity=0.120  Sum_probs=98.9

Q ss_pred             HHHHcCCcEEeeccchhhhhHHhhc--CCCCeech--hchHhHHhhCCCeEEEEcCHHHHhhhhHHHHH-ccc--c-Ccc
Q 046601           97 FLEKLGACYSVIPCHIYRIWHDEVS--CFVPFLHV--TKSKPLEVRSPLGIHVLMTNGILTAGVLKLCY-QIK--A-TME  168 (233)
Q Consensus        97 ~Le~~Gad~IVIaCNTAH~~~del~--~~vPii~i--~tv~~~~~~~~~rVGVLAT~gTi~sglY~~~l-~~~--~-~q~  168 (233)
                      +|+++|+|+||++|||+ +++++++  +++||+||  ++++.+... ++||||+||.+|+.+ .|++.+ +..  + ...
T Consensus        70 ~l~~~g~d~iviaCnta-~~~~~l~~~~~iPvi~i~~~~~~~a~~~-~~rigVlat~~t~~~-~~~~~~~~~~g~~~~~~  146 (228)
T 2eq5_A           70 EFEREGVDAIIISCAAD-PAVEKVRKLLSIPVIGAGSSVSALALAY-GRRVGVLNLTEETPK-VIRSILGNNLIAEDHPS  146 (228)
T ss_dssp             HHHHTTCSEEEECSTTC-TTHHHHHHHCSSCEEEHHHHHHHHHHTT-CSSEEEECSSSCCCH-HHHHHHGGGEEEEECCT
T ss_pred             HHHHCCCCEEEEeCCch-HHHHHHHHhCCCCEeCccHHHHHHHHHh-CCeEEEEecCcccHH-HHHHHHHHHhCccccCC
Confidence            88999999999999999 8899998  89999997  677776654 489999999999995 799999 621  1 111


Q ss_pred             hhhhHHHHHHhcCCcHHHHHHHHHHHHHHhhCCCCEEEEcCCccc--cCCCC-CCCCCCeEecCccc
Q 046601          169 HTLIPAVDALNRKDVEGATNLLRRALQVLLARAVNIVILASNDIL--DLLPP-DDPLFNKCIDPMDA  232 (233)
Q Consensus       169 ~~v~~~I~~vk~G~~~~~~~~l~~~~~~l~~~gaD~vILGCTElP--ll~~~-~~~~~v~iIDp~~~  232 (233)
                      . +.+ +..+.   .+...+.+.++++++.++|+|+|||||||||  ++.+. ....++++|||..+
T Consensus       147 ~-~~~-v~~~~---~~~~~~~l~~~~~~l~~~~~d~IvLgCT~~~t~~~~~~i~~~~~vpvids~~~  208 (228)
T 2eq5_A          147 G-VSN-TLDLL---TDWGRREVINAAKRLKEKGVEVIALGCTGMSTIGIAPVLEEEVGIPVIDPVIA  208 (228)
T ss_dssp             T-CCS-GGGGG---SHHHHHHHHHHHHHHHHTTCSEEEECCTHHHHHTCHHHHHHHHSSCEECHHHH
T ss_pred             c-eee-HHHhc---ChHHHHHHHHHHHHHHHcCCCEEEECCCCcchHHHHHHHHHHcCCCEEchHHH
Confidence            1 222 22222   1446788999999998889999999999999  87765 22237899999754

>3ixl_A Amdase, arylmalonate decarboxylase; enantioselective decarboxylation, lyase; HET: CME PAC; 1.45A {Bordetella bronchiseptica} PDB: 3ixm_A 2vlb_A 3dg9_A 3ip8_A* 3dtv_A* 3eis_A*

Probab=99.75  E-value=6.6e-19  Score=153.71  Aligned_cols=133  Identities=15%  Similarity=0.073  Sum_probs=96.1

Q ss_pred             HHHHcCCcEEeeccchhhhh---------HHhhc--CCCCeech--hchHhHHhhCCCeEEEEcCHHHHhhhhHHHHHcc
Q 046601           97 FLEKLGACYSVIPCHIYRIW---------HDEVS--CFVPFLHV--TKSKPLEVRSPLGIHVLMTNGILTAGVLKLCYQI  163 (233)
Q Consensus        97 ~Le~~Gad~IVIaCNTAH~~---------~del~--~~vPii~i--~tv~~~~~~~~~rVGVLAT~gTi~sglY~~~l~~  163 (233)
                      .|+.+|+|+|+++|||+|+|         .++++  .++|++++  ++++.++..+.+||||++|-.+..++.|++.+++
T Consensus        61 ~L~~ag~d~i~~aCtsas~~~G~~~~~~~~~~l~~~~~iPv~~~~~A~~~al~~~g~~rvglltpy~~~~~~~~~~~l~~  140 (240)
T 3ixl_A           61 RLQKQGAAVVSLMCTSLSFYRGAAFNAALTVAMREATGLPCTTMSTAVLNGLRALGVRRVALATAYIDDVNERLAAFLAE  140 (240)
T ss_dssp             HHHHTTEEEEEECCHHHHHTTCHHHHHHHHHHHHHHHSSCEEEHHHHHHHHHHHTTCSEEEEEESSCHHHHHHHHHHHHH
T ss_pred             HhccCCCCEEEECCcHHHHhcccchHHHHHHHHHhccCCCEECHHHHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHHH
Confidence            89999999999999999985         47887  89999999  6777777778899999999777779999999882


Q ss_pred             ccCcchhhhHH--H-HHHhcCCcHHHHHHHHHHHHH-H-hhCCCCEEEEcCCccccCC--CC-CCCCCCeEecCccc
Q 046601          164 KATMEHTLIPA--V-DALNRKDVEGATNLLRRALQV-L-LARAVNIVILASNDILDLL--PP-DDPLFNKCIDPMDA  232 (233)
Q Consensus       164 ~~~q~~~v~~~--I-~~vk~G~~~~~~~~l~~~~~~-l-~~~gaD~vILGCTElPll~--~~-~~~~~v~iIDp~~~  232 (233)
                      ... +-+....  + ...+.|..+  .+.+.+++++ + ...|+|+|||||||||.+.  +. ....+++++|++.+
T Consensus       141 ~Gi-ev~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~adaivL~CT~l~~l~~i~~le~~lg~PVids~~a  214 (240)
T 3ixl_A          141 ESL-VPTGCRSLGITGVEAMARVD--TATLVDLCVRAFEAAPDSDGILLSSGGLLTLDAIPEVERRLGVPVVSSSPA  214 (240)
T ss_dssp             TTC-EEEEEEECCCCCHHHHHTCC--HHHHHHHHHHHHHTSTTCSEEEEECTTSCCTTHHHHHHHHHSSCEEEHHHH
T ss_pred             CCC-EEeccccCCCCCcchhhcCC--HHHHHHHHHHHhhcCCCCCEEEEeCCCCchhhhHHHHHHHhCCCEEeHHHH
Confidence            111 0000000  0 112223221  3467777777 7 6779999999999999875  32 12336789998764

>2xed_A Putative maleate isomerase; nicotinic acid catabolism, cofactor-independent CIS-trans isomerase; 1.95A {Nocardia farcinica} PDB: 2xec_A

Probab=99.73  E-value=8.4e-19  Score=155.58  Aligned_cols=133  Identities=8%  Similarity=-0.022  Sum_probs=95.3

Q ss_pred             HHHHcCCcEEeeccchhhhhH---------Hhhc--C-----CCCeech--hchHhHHhhCCCeEEEEcCHHHHhhhhHH
Q 046601           97 FLEKLGACYSVIPCHIYRIWH---------DEVS--C-----FVPFLHV--TKSKPLEVRSPLGIHVLMTNGILTAGVLK  158 (233)
Q Consensus        97 ~Le~~Gad~IVIaCNTAH~~~---------del~--~-----~vPii~i--~tv~~~~~~~~~rVGVLAT~gTi~sglY~  158 (233)
                      .|+++|+|+|+++|||+|+++         ++++  +     ++|++++  ++++.++..+.+||||++|-.+..++.|+
T Consensus        85 ~L~~~g~d~IviaCnta~~~~G~~~~~~~~~~l~~~~~~~~~~iPv~~~~~A~~~al~~~g~~rvgvltp~~~~~~~~~~  164 (273)
T 2xed_A           85 EIADAAPEVILYACLVAVMVGGPGEHHRVESAVAEQLATGGSQALVRSSAGALVEGLRALDAQRVALVTPYMRPLAEKVV  164 (273)
T ss_dssp             HHHTTCCSEEEECCHHHHHTTCTTHHHHHHHHHHHHHHHTTCCCEEEEHHHHHHHHHHHTTCCEEEEEECSCHHHHHHHH
T ss_pred             HHhhcCCCEEEECCChHHHhcccchhHHHHHHHHHHhhccCCCCCEecHHHHHHHHHHHcCCCeEEEEcCChhhhHHHHH
Confidence            899999999999999999985         8887  7     9999999  66666666667899999877777788999


Q ss_pred             HHHccccCcchhhhH--HHH-HHhcCCcHHHHHHHHHHHHHHhhCCCCEEEEc-CCccccCC--CC-CCCCCCeEecCcc
Q 046601          159 LCYQIKATMEHTLIP--AVD-ALNRKDVEGATNLLRRALQVLLARAVNIVILA-SNDILDLL--PP-DDPLFNKCIDPMD  231 (233)
Q Consensus       159 ~~l~~~~~q~~~v~~--~I~-~vk~G~~~~~~~~l~~~~~~l~~~gaD~vILG-CTElPll~--~~-~~~~~v~iIDp~~  231 (233)
                      +.++....... ...  .++ .++.|..+  .+.+.++++.+.+.|+|+|||| |||||.+.  +. ....++++||++.
T Consensus       165 ~~l~~~Gi~v~-~~~~~~~~~~~~~g~~~--~~~l~~~~~~l~~~gadaIvLg~CT~l~~~~~~~~le~~lg~PVids~~  241 (273)
T 2xed_A          165 AYLEAEGFTIS-DWRALEVADNTEVGCIP--GEQVMAAARSLDLSEVDALVISCAVQMPSLPLVETAEREFGIPVLSAAT  241 (273)
T ss_dssp             HHHHHTTCEEE-EEEECCCCBHHHHHTCC--HHHHHHHHHHSCCTTCSEEEEESSSSSCCTTHHHHHHHHHSSCEEEHHH
T ss_pred             HHHHHCCCEEe-ccccCCCccchhhcccC--HHHHHHHHHHHhhCCCCEEEEcCCCCcchHHhHHHHHHHhCCCEEcHHH
Confidence            99982211100 000  011 23333322  2457777788877899999999 99999862  32 1223678999875


Q ss_pred             c
Q 046601          232 A  232 (233)
Q Consensus       232 ~  232 (233)
                      +
T Consensus       242 a  242 (273)
T 2xed_A          242 A  242 (273)
T ss_dssp             H
T ss_pred             H
Confidence            4

>2dgd_A 223AA long hypothetical arylmalonate decarboxylas; octamer, alpha/beta structure, lyase; 2.90A {Sulfolobus tokodaii}

Probab=99.70  E-value=4.8e-18  Score=145.25  Aligned_cols=131  Identities=10%  Similarity=-0.013  Sum_probs=90.6

Q ss_pred             HHHHHHcCCcEEeeccchhhhhH----Hhhc--CCCCeech-hchHhHHhhCCCeEEEEcCHHHHhhhhHHHHHccccCc
Q 046601           95 WSFLEKLGACYSVIPCHIYRIWH----DEVS--CFVPFLHV-TKSKPLEVRSPLGIHVLMTNGILTAGVLKLCYQIKATM  167 (233)
Q Consensus        95 ~~~Le~~Gad~IVIaCNTAH~~~----del~--~~vPii~i-~tv~~~~~~~~~rVGVLAT~gTi~sglY~~~l~~~~~q  167 (233)
                      .+.|+++ +|+|+++|||+|+++    ++++  .++|   + ++++.++..+.+||||++|..+..++.|++.++.....
T Consensus        60 a~~L~~~-~d~ivi~Cnt~~~~~g~~~~~l~~~~~iP---~~a~~~a~~~~g~~rvgvlt~~~~~~~~~~~~~l~~~G~~  135 (223)
T 2dgd_A           60 YSLLAEV-SDIIIYGRTYGTHKHAHVIKRVIKDVVIP---EESVYELLKKLNVRKLWIGTPYIKERTLEEVEWWRNKGFE  135 (223)
T ss_dssp             HHHHTTT-CSEEEECCCTTTTTCHHHHHHHSTTCBCH---HHHHHHHHHHTTCCEEEEEESSCHHHHHHHHHHHHTTTCE
T ss_pred             HHHhhcc-CCEEEEcCCHHHHhhhHHHHHHHHhcCCC---HHHHHHHHHHcCCCeEEEEeCCchHHHHHHHHHHHhCCcE
Confidence            3489999 999999999999986    8998  7899   6 67676766667899999877777799999999822100


Q ss_pred             chhhhH--HH-HHHhcCCcHHHHHHHHHHHHHHhhC--CCCEEEEcCCccccC--CCC-CCCCCCeEecCccc
Q 046601          168 EHTLIP--AV-DALNRKDVEGATNLLRRALQVLLAR--AVNIVILASNDILDL--LPP-DDPLFNKCIDPMDA  232 (233)
Q Consensus       168 ~~~v~~--~I-~~vk~G~~~~~~~~l~~~~~~l~~~--gaD~vILGCTElPll--~~~-~~~~~v~iIDp~~~  232 (233)
                      .. ...  .+ ..++.|...  .+.+.++++.+.+.  |+|+|||||||||++  .+. ....++++||+..+
T Consensus       136 v~-~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~gadaIvLgCT~l~~~~~~~~l~~~~g~PVids~~~  205 (223)
T 2dgd_A          136 IV-GYDGLGKIRGIDISNTP--IFTIYRLVKRHLNEVLKADAVYIACTALSTYEAVQYLHEDLDMPVVSENAA  205 (223)
T ss_dssp             EE-EEEECCCCSHHHHHTCC--HHHHHHHHHTTHHHHTTSSEEEECCTTSCCTTHHHHHHHHHTSCEEEHHHH
T ss_pred             Ee-cccCCCCCCcchhhccC--HHHHHHHHHHHhcccCCCCEEEEeCCcccHHHHHHHHHHHhCCCEEEhHHH
Confidence            00 000  01 123333322  13456666666666  999999999999986  232 12236789998754

>3ojc_A Putative aspartate/glutamate racemase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha beta; 1.75A {Yersinia pestis}

Probab=93.42  E-value=0.19  Score=42.63  Aligned_cols=78  Identities=12%  Similarity=0.123  Sum_probs=50.9

Q ss_pred             CeEEEEcCHHHHhh-hhHHHHHc---cccCcch---hh-----hHHH-HHHhcCCcHHHHHHHHHHHHHHhhCCCCEEEE
Q 046601          141 LGIHVLMTNGILTA-GVLKLCYQ---IKATMEH---TL-----IPAV-DALNRKDVEGATNLLRRALQVLLARAVNIVIL  207 (233)
Q Consensus       141 ~rVGVLAT~gTi~s-glY~~~l~---~~~~q~~---~v-----~~~I-~~vk~G~~~~~~~~l~~~~~~l~~~gaD~vIL  207 (233)
                      |+|||||--|...+ .+|++..+   ...+|+.   ++     .+-+ +....|+.++....+.+.++.|.+.|+|.+|+
T Consensus         3 k~iGilGGmg~~at~~~~~~i~~~~~~~~~~~h~~~~~~~s~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~~g~~~ivi   82 (231)
T 3ojc_A            3 KILGLIGGMSWESTIPYYRMINQHVKAQLGGLHSAKIILYSVDFHEIEQLQAKGDWQTAAQLLSNAAISLKHAGAEVIVV   82 (231)
T ss_dssp             CCEEEEECTTHHHHHHHHHHHHHHHHHHHCTTCCCCEEEEECCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCEEEE
T ss_pred             CeEEEEccCCHHHHHHHHHHHHHHhHHhcCCCCCccceeeCCChhhHHHHHHCCChhHHHHHHHHHHHHHHhcCCCEEEE
Confidence            58999987777776 45665555   1112222   11     1112 23666776778888999999999999999999


Q ss_pred             cCCccccCCCC
Q 046601          208 ASNDILDLLPP  218 (233)
Q Consensus       208 GCTElPll~~~  218 (233)
                      +|.=...+.+.
T Consensus        83 aCNTa~~~~~~   93 (231)
T 3ojc_A           83 CTNTMHKVADD   93 (231)
T ss_dssp             CSSGGGGGHHH
T ss_pred             eCCchHHHHHH
Confidence            99754334443

>2zsk_A PH1733, 226AA long hypothetical aspartate racemase; alpha/beta fold, unknown function; 2.55A {Pyrococcus horikoshii}

Probab=88.20  E-value=0.089  Score=44.13  Aligned_cols=88  Identities=13%  Similarity=0.035  Sum_probs=50.9

Q ss_pred             CeEEEEcCHHHHhhhhHHHHHc----cccCcch---hhhH--HHHHH---hcCCcHHHHHHHHHHHHHHhhCCCCEEEEc
Q 046601          141 LGIHVLMTNGILTAGVLKLCYQ----IKATMEH---TLIP--AVDAL---NRKDVEGATNLLRRALQVLLARAVNIVILA  208 (233)
Q Consensus       141 ~rVGVLAT~gTi~sglY~~~l~----~~~~q~~---~v~~--~I~~v---k~G~~~~~~~~l~~~~~~l~~~gaD~vILG  208 (233)
                      ++|||||--|...+-.|-+.+.    ....|..   +++.  -+.+.   ..+ .+.....+.+.++.+.+.|+|+++++
T Consensus         2 ~~iGiiGGmgp~at~~~~~~i~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~L~~~g~d~ivia   80 (226)
T 2zsk_A            2 KKIGIIGGTTPESTLYYYKKYIEISREKFEKYFYPELIIYSINFKEFFQNPEG-WEGRKKILINAAKALERAGAELIAFA   80 (226)
T ss_dssp             CCEEEEECSSHHHHHHHHHHHHHHHHHHSSTTCCCCEEEEECCTHHHHTCTTH-HHHHHHHHHHHHHHHHHHTCSEEEES
T ss_pred             CeEEEecccCHHHHHHHHHHHHHHHHHhcCCccCCeeEEeCCCHHHHHhhcCC-cchHHHHHHHHHHHHHHcCCCEEEEC
Confidence            3689987555555555544444    1222221   1111  11222   222 45667788888899998999999999


Q ss_pred             CCccccCCCC-CCCCCCeEecC
Q 046601          209 SNDILDLLPP-DDPLFNKCIDP  229 (233)
Q Consensus       209 CTElPll~~~-~~~~~v~iIDp  229 (233)
                      |+=.+.+.+. ....++|++..
T Consensus        81 CnTa~~~~~~l~~~~~iPvi~i  102 (226)
T 2zsk_A           81 ANTPHLVFDDVQREVNVPMVSI  102 (226)
T ss_dssp             SSGGGGGHHHHHHHCSSCBCCH
T ss_pred             CCcHHHHHHHHHHhCCCCEecc
Confidence            9977755544 12235566653

>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1

Probab=86.45  E-value=1.2  Score=37.95  Aligned_cols=96  Identities=13%  Similarity=0.030  Sum_probs=54.5

Q ss_pred             HHHHcCCcEEeeccchhhhhHHhhcCCCCeech-h----chHhHHh-h-CCCeEEEEcCHHHHhh-hhHHHHHccccCcc
Q 046601           97 FLEKLGACYSVIPCHIYRIWHDEVSCFVPFLHV-T----KSKPLEV-R-SPLGIHVLMTNGILTA-GVLKLCYQIKATME  168 (233)
Q Consensus        97 ~Le~~Gad~IVIaCNTAH~~~del~~~vPii~i-~----tv~~~~~-~-~~~rVGVLAT~gTi~s-glY~~~l~~~~~q~  168 (233)
                      .++..|+|+|+=.=-||...-+.  +++||+.| .    .++.++. + ..+|||+++-+.++.. ..+.+.+.-+-.+.
T Consensus        58 ~~~~~~~dVIISRGgta~~Lr~~--~~iPVV~I~vs~~Dil~aL~~a~~~~~kIavVg~~~~~~~~~~i~~ll~~~i~~~  135 (225)
T 2pju_A           58 KLANERCDAIIAAGSNGAYLKSR--LSVPVILIKPSGYDVLQFLAKAGKLTSSIGVVTYQETIPALVAFQKTFNLRLDQR  135 (225)
T ss_dssp             HTTTSCCSEEEEEHHHHHHHHTT--CSSCEEEECCCHHHHHHHHHHTTCTTSCEEEEEESSCCHHHHHHHHHHTCCEEEE
T ss_pred             HHhcCCCeEEEeCChHHHHHHhh--CCCCEEEecCCHHHHHHHHHHHHhhCCcEEEEeCchhhhHHHHHHHHhCCceEEE
Confidence            45556799887777777655433  68999998 2    2233322 1 2579999987665432 23344333111111


Q ss_pred             hhhhHHHHHHhcCCcHHHHHHHHHHHHHHhhCCCCEEEEc
Q 046601          169 HTLIPAVDALNRKDVEGATNLLRRALQVLLARAVNIVILA  208 (233)
Q Consensus       169 ~~v~~~I~~vk~G~~~~~~~~l~~~~~~l~~~gaD~vILG  208 (233)
                      .           -   ...+.++..++.+.++|+++||=|
T Consensus       136 ~-----------~---~~~ee~~~~i~~l~~~G~~vVVG~  161 (225)
T 2pju_A          136 S-----------Y---ITEEDARGQINELKANGTEAVVGA  161 (225)
T ss_dssp             E-----------E---SSHHHHHHHHHHHHHTTCCEEEES
T ss_pred             E-----------e---CCHHHHHHHHHHHHHCCCCEEECC
Confidence            0           0   012345567778888999876643

>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}

Probab=84.85  E-value=4.1  Score=33.45  Aligned_cols=94  Identities=5%  Similarity=-0.023  Sum_probs=54.5

Q ss_pred             HHHHcCCcEEeeccchhhhhHHhhcCCCCeech--------hchHhHHhhCCCeEEEEcCHHHHhh-hhHHHHHccccCc
Q 046601           97 FLEKLGACYSVIPCHIYRIWHDEVSCFVPFLHV--------TKSKPLEVRSPLGIHVLMTNGILTA-GVLKLCYQIKATM  167 (233)
Q Consensus        97 ~Le~~Gad~IVIaCNTAH~~~del~~~vPii~i--------~tv~~~~~~~~~rVGVLAT~gTi~s-glY~~~l~~~~~q  167 (233)
                      .+ ..|+|+|+=.=-||...-+.  +++|++.|        .+++.++.. .+|||+++-+.++.. ..+.+.+.-+-.+
T Consensus        47 ~~-~~~~dVIISRGgta~~lr~~--~~iPVV~I~~s~~Dil~al~~a~~~-~~kIavvg~~~~~~~~~~~~~ll~~~i~~  122 (196)
T 2q5c_A           47 GL-QDEVDAIISRGATSDYIKKS--VSIPSISIKVTRFDTMRAVYNAKRF-GNELALIAYKHSIVDKHEIEAMLGVKIKE  122 (196)
T ss_dssp             HH-TTTCSEEEEEHHHHHHHHTT--CSSCEEEECCCHHHHHHHHHHHGGG-CSEEEEEEESSCSSCHHHHHHHHTCEEEE
T ss_pred             Hh-cCCCeEEEECChHHHHHHHh--CCCCEEEEcCCHhHHHHHHHHHHhh-CCcEEEEeCcchhhHHHHHHHHhCCceEE
Confidence            45 78999887777777655433  67999998        233334433 579999987665543 2344444311111


Q ss_pred             chhhhHHHHHHhcCCcHHHHHHHHHHHHHHhhCCCCEEEEc
Q 046601          168 EHTLIPAVDALNRKDVEGATNLLRRALQVLLARAVNIVILA  208 (233)
Q Consensus       168 ~~~v~~~I~~vk~G~~~~~~~~l~~~~~~l~~~gaD~vILG  208 (233)
                      ..        +  ...    +.+++.++.+.++|+++||=|
T Consensus       123 ~~--------~--~~~----~e~~~~i~~l~~~G~~vvVG~  149 (196)
T 2q5c_A          123 FL--------F--SSE----DEITTLISKVKTENIKIVVSG  149 (196)
T ss_dssp             EE--------E--CSG----GGHHHHHHHHHHTTCCEEEEC
T ss_pred             EE--------e--CCH----HHHHHHHHHHHHCCCeEEECC
Confidence            11        0  111    223456777888999876543

>3vav_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; structural genomics, seattle structural genomics center for infectious disease; 1.80A {Burkholderia thailandensis} SCOP: c.1.12.8 PDB: 3ez4_A

Probab=83.45  E-value=1.2  Score=39.34  Aligned_cols=32  Identities=22%  Similarity=0.199  Sum_probs=28.7

Q ss_pred             HHHHcCCcEEeeccchhhhhHHhhc--CCCCeech
Q 046601           97 FLEKLGACYSVIPCHIYRIWHDEVS--CFVPFLHV  129 (233)
Q Consensus        97 ~Le~~Gad~IVIaCNTAH~~~del~--~~vPii~i  129 (233)
                      .++++||++|++.|-++. ...++.  +++|+++|
T Consensus       181 a~~eAGA~~ivlE~vp~~-~a~~It~~l~iP~igI  214 (275)
T 3vav_A          181 AVEEAGAQLIVLEAVPTL-VAAEVTRELSIPTIGI  214 (275)
T ss_dssp             HHHHHTCSEEEEESCCHH-HHHHHHHHCSSCEEEE
T ss_pred             HHHHcCCCEEEecCCCHH-HHHHHHHhCCCCEEEE
Confidence            889999999999999886 667776  89999999

>1jfl_A Aspartate racemase; alpha-beta structure, HOMO-dimer, homologous domains, isomer; 1.90A {Pyrococcus horikoshii} SCOP: c.78.2.1 c.78.2.1 PDB: 2dx7_A* 1iu9_A

Probab=82.41  E-value=1  Score=37.44  Aligned_cols=87  Identities=16%  Similarity=0.119  Sum_probs=47.7

Q ss_pred             CeEEEEcCHHHHhh-hhHHHHHc---cccCcchh---------hhHHHHHHhcCCcHHHHHHHHHHHHHHhhCCCCEEEE
Q 046601          141 LGIHVLMTNGILTA-GVLKLCYQ---IKATMEHT---------LIPAVDALNRKDVEGATNLLRRALQVLLARAVNIVIL  207 (233)
Q Consensus       141 ~rVGVLAT~gTi~s-glY~~~l~---~~~~q~~~---------v~~~I~~vk~G~~~~~~~~l~~~~~~l~~~gaD~vIL  207 (233)
                      ++|||+|=-|...+ .+|++..+   ...+|...         +.+-...+..+ .+.....+.+.++.+.+.|+|.+++
T Consensus         2 ~~iGiiGGmg~~at~~~~~~i~~~~~~~~d~~~~~~~~~~~~~i~~r~~~~~~~-~~~~~~~l~~~~~~l~~~g~d~ivi   80 (228)
T 1jfl_A            2 KTIGILGGMGPLATAELFRRIVIKTPAKRDQEHPKVIIFNNPQIPDRTAYILGK-GEDPRPQLIWTAKRLEECGADFIIM   80 (228)
T ss_dssp             CCEEEEECSSHHHHHHHHHHHHHTCCCSSGGGSCCEEEEECTTSCCHHHHHTTS-SCCCHHHHHHHHHHHHHHTCSEEEC
T ss_pred             CeEEEecccCHHHHHHHHHHHHHHHHhhcCCccCcEeEEeCCCHHHHHHHHHcC-CchHHHHHHHHHHHHHHcCCCEEEE
Confidence            47999875555543 46666654   11112110         10111112222 3345567778888898889999999


Q ss_pred             cCCccccCCCC-CCCCCCeEec
Q 046601          208 ASNDILDLLPP-DDPLFNKCID  228 (233)
Q Consensus       208 GCTElPll~~~-~~~~~v~iID  228 (233)
                      +|+=...+.+. ....++|++.
T Consensus        81 aCnTa~~~~~~l~~~~~iPvi~  102 (228)
T 1jfl_A           81 PCNTAHAFVEDIRKAIKIPIIS  102 (228)
T ss_dssp             SCTGGGGGHHHHHHHCSSCBCC
T ss_pred             cCccHHHHHHHHHHhCCCCEec
Confidence            99955444443 1223455554

>3dah_A Ribose-phosphate pyrophosphokinase; pyrophosphoki seattle structural genomics center for infectious disease, magnesium, metal binding; HET: AMP; 2.30A {Burkholderia pseudomallei}

Probab=80.88  E-value=1.2  Score=39.91  Aligned_cols=130  Identities=17%  Similarity=0.195  Sum_probs=74.9

Q ss_pred             Ccchhhhhh-HHHHHHHHHH-HHHHcCCcEEeeccchhhhhHHhhc--CCCCeech---h-chHhHHhhCCCeEEEEc--
Q 046601           78 GRSDLLKLE-HALIAENLWS-FLEKLGACYSVIPCHIYRIWHDEVS--CFVPFLHV---T-KSKPLEVRSPLGIHVLM--  147 (233)
Q Consensus        78 ~~~~~~~~~-~~~I~~~l~~-~Le~~Gad~IVIaCNTAH~~~del~--~~vPii~i---~-tv~~~~~~~~~rVGVLA--  147 (233)
                      .|.+...++ ++.|...+.. .|+.+|+|-++.=  -.|.  ++++  +++|+-|+   + -+++++....+..-|+|  
T Consensus        99 aRQDr~~~~~r~pisak~vA~ll~~~G~d~vit~--DlH~--~qiqgfF~ipvd~l~a~p~l~~~i~~~~~~~~vVVspd  174 (319)
T 3dah_A           99 ARQDRRPRSARVAISAKVVANMLEIAGVERIITM--DLHA--DQIQGFFDIPVDNIYATPILLGDLRKQNYPDLLVVSPD  174 (319)
T ss_dssp             TTCCSCCTTCCCCCHHHHHHHHHHHHTCCEEEEE--SCSC--GGGGGGCSSCEEEECCHHHHHHHHHTTCCTTEEEECCS
T ss_pred             cccccccCCCCCCccHHHHHHHHHhcCCCEEEEE--ECCC--hHHhhhcCCceEecccHHHHHHHHHHhCCCCcEEEEeC
Confidence            455555555 6666666666 8889999988643  2344  6777  78999888   2 33455544344555554  


Q ss_pred             CHHHHhhhhHHHHHc------c----ccCcchhhhHHHHHHhcCC---cH---HHHHHHHHHHHHHhhCCCCEEEEcCCc
Q 046601          148 TNGILTAGVLKLCYQ------I----KATMEHTLIPAVDALNRKD---VE---GATNLLRRALQVLLARAVNIVILASND  211 (233)
Q Consensus       148 T~gTi~sglY~~~l~------~----~~~q~~~v~~~I~~vk~G~---~~---~~~~~l~~~~~~l~~~gaD~vILGCTE  211 (233)
                      +-|......+.+.+.      +    .....+ .+....+++...   .+   ..-..+.++.+.|.++|+..+...|||
T Consensus       175 ~Ggv~~A~~lA~~L~~p~~~i~K~r~~~~~v~-~~~i~g~v~gk~viiVDDii~TG~Tl~~a~~~L~~~Ga~~v~~~~tH  253 (319)
T 3dah_A          175 VGGVVRARALAKQLNCDLAIIDKRRPKANVAE-VMNIIGEVEGRTCVIMDDMVDTAGTLCKAAQVLKERGAKQVFAYATH  253 (319)
T ss_dssp             STTHHHHHHHHHHTTCEEEC---------------------CCSEEEEEEEEESSCHHHHHHHHHHHHTTCSCEEEEEEE
T ss_pred             CCccHHHHHHHHHhCCCEEEEEEEeccCCceE-EEEccccCCCCEEEEEecccCchHHHHHHHHHHHHcCCCEEEEEEEe
Confidence            335666666666665      1    111111 233333344221   11   123567788888999999999999999


Q ss_pred             c
Q 046601          212 I  212 (233)
Q Consensus       212 l  212 (233)
                      =
T Consensus       254 ~  254 (319)
T 3dah_A          254 P  254 (319)
T ss_dssp             E
T ss_pred             e
Confidence            3

>3qvl_A Putative hydantoin racemase; isomerase; HET: 5HY; 1.82A {Klebsiella pneumoniae subsp} PDB: 3qvk_A* 3qvj_A

Probab=80.80  E-value=2.9  Score=35.69  Aligned_cols=50  Identities=16%  Similarity=0.103  Sum_probs=34.9

Q ss_pred             HHHHHHHHHHHHHcCCcEEeeccchhhhhHHhhc--CCCCeech--hchHhHHh
Q 046601           88 ALIAENLWSFLEKLGACYSVIPCHIYRIWHDEVS--CFVPFLHV--TKSKPLEV  137 (233)
Q Consensus        88 ~~I~~~l~~~Le~~Gad~IVIaCNTAH~~~del~--~~vPii~i--~tv~~~~~  137 (233)
                      +.+.+...+.+++.|+|.||+.|--...+.+.++  .++|+|+-  ++++.++.
T Consensus       160 ~~l~~~~~~~~~~~gad~IVLGCTh~p~l~~~i~~~~gVpvID~~~a~~~~~~~  213 (245)
T 3qvl_A          160 EKVRERCIRALKEDGSGAIVLGSGGMATLAQQLTRELRVPVIDGVSAAVKMVES  213 (245)
T ss_dssp             HHHHHHHHHHHHHSCCSEEEECCGGGGGGHHHHHHHHTSCEECHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCEEEECCCChHHHHHHHHHHcCCeEEccHHHHHHHHHH
Confidence            3333444445667899999999985555568888  78999996  55555443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	233
d1jfla2	113	c.78.2.1 (A:116-228) Aspartate racemase {Archaeon	4e-04

>d1jfla2 c.78.2.1 (A:116-228) Aspartate racemase {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 113

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/glutamate racemase
family: Aspartate/glutamate racemase
domain: Aspartate racemase
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score = 36.7 bits (84), Expect = 4e-04
 Identities = 18/100 (18%), Positives = 39/100 (39%), Gaps = 10/100 (10%)

Query: 143 IHVLMTNGILTAGVLK---------LCYQIKATMEHTLIPAVDALNRKDVEGATNLLRRA 193
             +L T G + +GV +         +    +   +  +    + +   +++    LL + 
Sbjct: 4   AGLLATTGTIVSGVYEKEFSKYGVEIMTPTEDEQKDVMRGIYEGVKAGNLKLGRELLLKT 63

Query: 194 LQVLLARAVNIVILASNDILDLLPPDDPLFNKCIDPMDAL 233
            ++L  R    +I    ++  +L  DD      IDPMD +
Sbjct: 64  AKILEERGAECIIAGCTEVSVVLKQDDLKV-PLIDPMDVI 102

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	233
d1jfla2	113	Aspartate racemase {Archaeon Pyrococcus horikoshii	99.85
d1jfla1	115	Aspartate racemase {Archaeon Pyrococcus horikoshii	99.76
d1b74a2	147	Glutamate racemase {Aquifex pyrophilus [TaxId: 271	99.67
d1b74a1	105	Glutamate racemase {Aquifex pyrophilus [TaxId: 271	98.99
d2pjua1	186	Propionate catabolism operon regulatory protein Pr	90.7
d1jfla1	115	Aspartate racemase {Archaeon Pyrococcus horikoshii	88.25
d1jfla2	113	Aspartate racemase {Archaeon Pyrococcus horikoshii	82.59

>d1jfla2 c.78.2.1 (A:116-228) Aspartate racemase {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/glutamate racemase
family: Aspartate/glutamate racemase
domain: Aspartate racemase
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.85  E-value=9.9e-23  Score=155.79  Aligned_cols=91  Identities=20%  Similarity=0.339  Sum_probs=75.6

Q ss_pred             CeEEEEcCHHHHhhhhHHHHHc---------cccCcchhhhHHHHH-HhcCCcHHHHHHHHHHHHHHhhCCCCEEEEcCC
Q 046601          141 LGIHVLMTNGILTAGVLKLCYQ---------IKATMEHTLIPAVDA-LNRKDVEGATNLLRRALQVLLARAVNIVILASN  210 (233)
Q Consensus       141 ~rVGVLAT~gTi~sglY~~~l~---------~~~~q~~~v~~~I~~-vk~G~~~~~~~~l~~~~~~l~~~gaD~vILGCT  210 (233)
                      ||||||||++|++|++|++.++         +++.|+. ++.+|+. .+.+..+.++..+..+++.+.++|+|++|||||
T Consensus         2 krIGlLaT~~T~~s~~Y~~~l~~~g~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~g~d~iILGCT   80 (113)
T d1jfla2           2 KKAGLLATTGTIVSGVYEKEFSKYGVEIMTPTEDEQKD-VMRGIYEGVKAGNLKLGRELLLKTAKILEERGAECIIAGCT   80 (113)
T ss_dssp             SEEEEECCHHHHHHTHHHHHHHHTTCEEECCCHHHHHH-HHHHHHTTGGGTCHHHHHHHHHHHHHHHHHTTCSEEEECSH
T ss_pred             CEEEEEeCHHHHhhHHHHHHHHHhcccccCcchhHHHH-HHHHHHHHHccccchHHHHHHHHHhhhhhcCCCCEEEEccc
Confidence            7999999999999999999998         2233444 7777775 666666777889999999999999999999999


Q ss_pred             ccccCCCCCCCCCCeEecCcccC
Q 046601          211 DILDLLPPDDPLFNKCIDPMDAL  233 (233)
Q Consensus       211 ElPll~~~~~~~~v~iIDp~~~L  233 (233)
                      |||++.+. ...++++|||+++|
T Consensus        81 elpll~~~-~~~~~~~iD~~~~l  102 (113)
T d1jfla2          81 EVSVVLKQ-DDLKVPLIDPMDVI  102 (113)
T ss_dssp             HHHHHCCG-GGCSSCEECHHHHH
T ss_pred             cHHHHhhh-hcCCCcEECcHHHH
Confidence            99999887 33468899998764

>d1jfla1 c.78.2.1 (A:1-115) Aspartate racemase {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/glutamate racemase
family: Aspartate/glutamate racemase
domain: Aspartate racemase
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.76  E-value=3.2e-19  Score=138.00  Aligned_cols=79  Identities=19%  Similarity=0.375  Sum_probs=69.1

Q ss_pred             cccCCCCCCceEEeeCchh---hhhhhcCCCCCCCCCCCcchhhhhhHHHHHHHHHH---HHHHcCCcEEeeccchhhhh
Q 046601           43 FLLQTDESGKFLVGSNPVL---SKDLLSHERNSLPSLNGRSDLLKLEHALIAENLWS---FLEKLGACYSVIPCHIYRIW  116 (233)
Q Consensus        43 ~~~~Dqeh~~~iv~~~p~i---t~~il~~~~~p~~~~~~~~~~~~~~~~~I~~~l~~---~Le~~Gad~IVIaCNTAH~~  116 (233)
                      ....||||++++++|+|++   +.++.++.++|.+                  .+.+   .|+++|||+++|||||+|+|
T Consensus        27 ~~~~d~~~~~~il~s~~~~~~r~~~~~~~~~~~~~------------------~l~~~~~~Le~~Ga~~i~i~cNT~H~~   88 (115)
T d1jfla1          27 PAKRDQEHPKVIIFNNPQIPDRTAYILGKGEDPRP------------------QLIWTAKRLEECGADFIIMPCNTAHAF   88 (115)
T ss_dssp             CCSSGGGSCCEEEEECTTSCCHHHHHTTSSCCCHH------------------HHHHHHHHHHHHTCSEEECSCTGGGGG
T ss_pred             HHhcCCCCChhheeecCCHHHHHHHHhccccchHH------------------HHHHHHHHHHhcCCCEEEEcCcHHHHH
Confidence            4578999999999999987   7788877777876                  5555   99999999999999999999


Q ss_pred             HHhhc--CCCCeech--hchHhHHhhC
Q 046601          117 HDEVS--CFVPFLHV--TKSKPLEVRS  139 (233)
Q Consensus       117 ~del~--~~vPii~i--~tv~~~~~~~  139 (233)
                      +|+++  +++|++||  +|++++++.|
T Consensus        89 ~d~i~~~~~iP~l~i~~~t~~~i~~~G  115 (115)
T d1jfla1          89 VEDIRKAIKIPIISMIEETAKKVKELG  115 (115)
T ss_dssp             HHHHHHHCSSCBCCHHHHHHHHHHHTT
T ss_pred             HHHHHHHCCCCEecHHHHHHHHHHhcC
Confidence            99999  99999999  8888887653

>d1b74a2 c.78.2.1 (A:106-252) Glutamate racemase {Aquifex pyrophilus [TaxId: 2714]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/glutamate racemase
family: Aspartate/glutamate racemase
domain: Glutamate racemase
species: Aquifex pyrophilus [TaxId: 2714]

Probab=99.67  E-value=2.2e-18  Score=138.82  Aligned_cols=87  Identities=14%  Similarity=0.080  Sum_probs=65.6

Q ss_pred             CCeEEEEcCHHHHhhhhHHHHHccccCc------chhhhHHHHHHhcCCc--HHHHHHHHHHHHHHhhCCCCEEEEcCCc
Q 046601          140 PLGIHVLMTNGILTAGVLKLCYQIKATM------EHTLIPAVDALNRKDV--EGATNLLRRALQVLLARAVNIVILASND  211 (233)
Q Consensus       140 ~~rVGVLAT~gTi~sglY~~~l~~~~~q------~~~v~~~I~~vk~G~~--~~~~~~l~~~~~~l~~~gaD~vILGCTE  211 (233)
                      +||||||||++|++|+.|++.++.....      .. +++.   |++|..  +...+.++++++++. .++|++||||||
T Consensus         1 Nk~IgVlAT~~Tv~s~~y~~~i~~~~~~v~~~~~~~-lv~~---IE~g~~~~~~~~~~i~~~l~~l~-~~id~lvLGCTH   75 (147)
T d1b74a2           1 NKKIGVIGTPATVKSGAYQRKLEEGGADVFAKACPL-FAPL---AEEGLLEGEITRKVVEHYLKEFK-GKIDTLILGCTH   75 (147)
T ss_dssp             SSEEEEEECHHHHHHCHHHHHHHTTSCEEEEEECCC-CTTT---CCTTTSSSTTHHHHHHHHTTTTT-TTCSEEEECCCC
T ss_pred             CCEEEEEECHHHHhhHHHHHHHHhcCCcEEEeccHH-HHHH---HHcCCcccHHHHHHHHHHHHHhh-hcCcEEEEecCc
Confidence            5799999999999999999999833211      11 2333   566653  456778888888764 579999999999


Q ss_pred             cccCCCCC---CCCCCeEecCccc
Q 046601          212 ILDLLPPD---DPLFNKCIDPMDA  232 (233)
Q Consensus       212 lPll~~~~---~~~~v~iIDp~~~  232 (233)
                      ||++.+..   .+ ++++|||+++
T Consensus        76 yP~l~~~i~~~~~-~v~iIDpa~~   98 (147)
T d1b74a2          76 YPLLKKEIKKFLG-DAEVVDSSEA   98 (147)
T ss_dssp             TTSCHHHHHHHHC-SCEEECHHHH
T ss_pred             chhHHHHHHHHCC-CCEEEECHHH
Confidence            99997751   23 6899999864

>d1b74a1 c.78.2.1 (A:1-105) Glutamate racemase {Aquifex pyrophilus [TaxId: 2714]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/glutamate racemase
family: Aspartate/glutamate racemase
domain: Glutamate racemase
species: Aquifex pyrophilus [TaxId: 2714]

Probab=98.99  E-value=2.3e-10  Score=86.58  Aligned_cols=56  Identities=18%  Similarity=0.199  Sum_probs=48.9

Q ss_pred             hhhhHHHHHHHHHH---HHHHcCCcEEeeccchhhhh-HHhhc--CCCCeech--hchHhHHhh
Q 046601           83 LKLEHALIAENLWS---FLEKLGACYSVIPCHIYRIW-HDEVS--CFVPFLHV--TKSKPLEVR  138 (233)
Q Consensus        83 ~~~~~~~I~~~l~~---~Le~~Gad~IVIaCNTAH~~-~del~--~~vPii~i--~tv~~~~~~  138 (233)
                      |.+++++|.++..+   +|.+.|+|+||||||||+.. +++++  +++|++++  ++++++.+.
T Consensus        40 G~ks~~~I~~~~~~~~~~l~~~~~~~iViACNTaS~~al~~lr~~~~~PiiGvi~P~ik~A~~~  103 (105)
T d1b74a1          40 GIRSKDTIIRYSLECAGFLKDKGVDIIVVACNTASAYALERLKKEINVPVFGVIEPGVKEALKK  103 (105)
T ss_dssp             GGSCHHHHHHHHHHHHHHHHTTTCSEEEECCHHHHHHHHHHHHHHSSSCEEESHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHcCCCEEEEecCcHHHHHHHHHHHHCCCCEEEeehHHHHHHHHh
Confidence            57788888888888   99999999999999999987 79999  89999995  788876543

>d2pjua1 c.92.3.1 (A:11-196) Propionate catabolism operon regulatory protein PrpR {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Chelatase-like
superfamily: PrpR receptor domain-like
family: PrpR receptor domain-like
domain: Propionate catabolism operon regulatory protein PrpR
species: Escherichia coli [TaxId: 562]

Probab=90.70  E-value=0.2  Score=39.64  Aligned_cols=102  Identities=11%  Similarity=0.035  Sum_probs=61.2

Q ss_pred             HHHHHHHHHHcCCcEEeeccchhhhhHHhhcCCCCeech-h----chHhHHh--hCCCeEEEEcCHHHHh-hhhHHHHHc
Q 046601           91 AENLWSFLEKLGACYSVIPCHIYRIWHDEVSCFVPFLHV-T----KSKPLEV--RSPLGIHVLMTNGILT-AGVLKLCYQ  162 (233)
Q Consensus        91 ~~~l~~~Le~~Gad~IVIaCNTAH~~~del~~~vPii~i-~----tv~~~~~--~~~~rVGVLAT~gTi~-sglY~~~l~  162 (233)
                      ...+.+.++..|+|+|+=.=.||+..-+.  +++|++.| .    ..+.+..  +.++|||+++=+.++. ...+.+.+.
T Consensus        40 v~~~~~~~~~~~~DviISRG~ta~~ir~~--~~iPVV~I~vs~~Dil~al~~a~~~~~kiavV~~~~~~~~~~~~~~ll~  117 (186)
T d2pjua1          40 VTYIRKKLANERCDAIIAAGSNGAYLKSR--LSVPVILIKPSGYDVLQFLAKAGKLTSSIGVVTYQETIPALVAFQKTFN  117 (186)
T ss_dssp             HHHHHHHTTTSCCSEEEEEHHHHHHHHTT--CSSCEEEECCCHHHHHHHHHHTTCTTSCEEEEEESSCCHHHHHHHHHHT
T ss_pred             HHHHHHHHHcCCCCEEEECchHHHHHHHh--CCCCEEEEcCCHhHHHHHHHHHHHhCCCEEEEeCCccchHHHHHHHHhC
Confidence            33455567778999999999999875333  67999998 2    2222222  1267999998655433 233444443


Q ss_pred             cccCcchhhhHHHHHHhcCCcHHHHHHHHHHHHHHhhCCCCEEEEc
Q 046601          163 IKATMEHTLIPAVDALNRKDVEGATNLLRRALQVLLARAVNIVILA  208 (233)
Q Consensus       163 ~~~~q~~~v~~~I~~vk~G~~~~~~~~l~~~~~~l~~~gaD~vILG  208 (233)
                      -+-.+..        +      ...+.++..++.+.++|+|+||=|
T Consensus       118 ~~i~~~~--------~------~~~~e~~~~v~~l~~~G~~vVVG~  149 (186)
T d2pjua1         118 LRLDQRS--------Y------ITEEDARGQINELKANGTEAVVGA  149 (186)
T ss_dssp             CCEEEEE--------E------SSHHHHHHHHHHHHHTTCCEEEES
T ss_pred             CceEEEE--------e------cCHHHHHHHHHHHHHCCCCEEECC
Confidence            1111111        0      012345566777888899988755

>d1jfla1 c.78.2.1 (A:1-115) Aspartate racemase {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/glutamate racemase
family: Aspartate/glutamate racemase
domain: Aspartate racemase
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=88.25  E-value=0.074  Score=38.77  Aligned_cols=45  Identities=13%  Similarity=0.126  Sum_probs=32.6

Q ss_pred             HHHHHHHHHHHHHHhhCCCCEEEEcCCccccCCCC-CCCCCCeEec
Q 046601          184 EGATNLLRRALQVLLARAVNIVILASNDILDLLPP-DDPLFNKCID  228 (233)
Q Consensus       184 ~~~~~~l~~~~~~l~~~gaD~vILGCTElPll~~~-~~~~~v~iID  228 (233)
                      +.....+.+.++.|.+.|||.+++.|-=.-.+.+. ....++|+||
T Consensus        57 ~~~~~~l~~~~~~Le~~Ga~~i~i~cNT~H~~~d~i~~~~~iP~l~  102 (115)
T d1jfla1          57 EDPRPQLIWTAKRLEECGADFIIMPCNTAHAFVEDIRKAIKIPIIS  102 (115)
T ss_dssp             CCCHHHHHHHHHHHHHHTCSEEECSCTGGGGGHHHHHHHCSSCBCC
T ss_pred             cchHHHHHHHHHHHHhcCCCEEEEcCcHHHHHHHHHHHHCCCCEec
Confidence            34456777888999999999999999877666665 2233566665

>d1jfla2 c.78.2.1 (A:116-228) Aspartate racemase {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/glutamate racemase
family: Aspartate/glutamate racemase
domain: Aspartate racemase
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=82.59  E-value=0.96  Score=31.64  Aligned_cols=41  Identities=17%  Similarity=0.158  Sum_probs=31.6

Q ss_pred             HHHHHHHHHHHHcCCcEEeeccchhhhhHHhhcCCCCeech
Q 046601           89 LIAENLWSFLEKLGACYSVIPCHIYRIWHDEVSCFVPFLHV  129 (233)
Q Consensus        89 ~I~~~l~~~Le~~Gad~IVIaCNTAH~~~del~~~vPii~i  129 (233)
                      .......+.|.+.|+|.++++|-=.+..+++++.++|+|+-
T Consensus        58 ~~~~~~~~~l~~~g~d~iILGCTelpll~~~~~~~~~~iD~   98 (113)
T d1jfla2          58 ELLLKTAKILEERGAECIIAGCTEVSVVLKQDDLKVPLIDP   98 (113)
T ss_dssp             HHHHHHHHHHHHTTCSEEEECSHHHHHHCCGGGCSSCEECH
T ss_pred             HHHHHHhhhhhcCCCCEEEEccccHHHHhhhhcCCCcEECc
Confidence            34445556888999999999998665556777778999996