Citrus Sinensis ID: 046604

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130----
Protein Sequence
NEENIFEDGGQQLFKVEEQGCSRLCSHSSTSDGTSEDMVVLQLPYIIKFCKAHGVSKENEFGKGKSNDELKEMLLVADYLTIKDTLDYLAETLANRIKNKSVEYIRKFFGIENNFMPEEKEATRKEYELLRLLI
Secondary Structure (PSIPRED)
cccccEEEccccEEEEcHHHHHHHHHHHHcccccccccccccHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccHHHHHHHHcccccccHHHHHHHHHHcHHHHHHc
Secondary Structure Prediction (SSPRO)
ccEEEEEEccccEEEEcHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHccccHHHHHHHHccHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHccccHHHHHHHccccccccHHHHHHHHHHHHHHHHHc
Coil and Loop (DISEMBL)
NEENIFEDGGQQLFKVEEqgcsrlcshsstsdgtsedmVVLQLPYIIKFCKahgvskenefgkgksnDELKEMLLVADYLTIKDTLDYLAETLANRIKNKSVEYIRKFFgiennfmpeekEATRKEYELLRLLI
Flexible Loop (DISEMBL)
neenifedggqQLFKVEEQGCSRLCshsstsdgtseDMVVLQLPYIIKFCKAHGVSKENEFGKGKSNDELKEMLLVADYLTIKDTLDYLAETLAnriknksvEYIRKFFgiennfmpeekeatrkEYELLRLLI
Low Complexity Region (SEG)
NEENIFEDGGQQLFKVEEQGCSRLCSHSSTSDGTSEDMVVLQLPYIIKFCKAHGVSKENEFGKGKSNDELKEMLLVADYLTIKDTLDYLAETLANRIKNKSVEYIRKFFGIENNFMPEEKEATRKEYELLRLLI
Disordered region (IsUnstruct)
*************************************MVVLQLPYIIKFCKAHGVS*************LKEMLLVADYLTIKDTLDYLAETLANRIKNKSVEYIRKFFGIENNF*******************
Disordered Region (DISOPRED)
*EENIFEDGGQQLFKVEEQGCSRLCSHSSTSDGTSEDMVVLQLPYIIKFCKAHGVSKENEFGKGKSNDELKEMLLVADYLTIKDTLDYLAETLANRIKNKSVEYIRKFFGIENNFMPEEKEATRKEYELLRLLI
Disordered Region (DISEMBL)
********GGQQLFKVEEQGC*************SEDMVVLQLPYIIKFCKAHGVSKENEFGKGKSNDELKEMLLVADYLTIKDTLDYLAETLANRIKNKSVEYIRKFFGIENNFMPEEKEATRKEYELLRLLI
Disordered Region (DISPRO)
*EENIFEDGGQQLFKVEEQGCSRLCSHSSTSDGTSEDMVVLQLPYIIKFCKAHGVSKENEFGKGKSNDELKEMLLVADYLTIKDTLDYLAETLANRIKNKSVEYIRKFFGIENNFMPEEKEATRKEYELLRLLI
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
NEENIFEDGGQQLFKVEEQGCSRLCSHSSTSDGTSEDMVVLQLPYIIKFCKAHGVSKENEFGKGKSNDELKEMLLVADYLTIKDTLDYLAETLANRIKNKSVEYIRKFFGIENNFMPEEKEATRKEYELLRLLI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	134	2.2.26 [Sep-21-2011]
O81057	149	SKP1-like protein 14 OS=A	yes	no	0.820	0.738	0.366	2e-13
O49484	152	SKP1-like protein 11 OS=A	no	no	0.858	0.756	0.345	8e-12
Q9LSX8	152	SKP1-like protein 10 OS=A	no	no	0.873	0.769	0.310	9e-11
O65674	152	SKP1-like protein 12 OS=A	no	no	0.858	0.756	0.345	2e-10
P52285	162	SCF ubiquitin ligase comp	yes	no	0.537	0.444	0.423	7e-10
Q557E4	162	SCF ubiquitin ligase comp	yes	no	0.537	0.444	0.423	8e-10
Q9LSX9	153	SKP1-like protein 9 OS=Ar	no	no	0.880	0.771	0.303	9e-10
Q8TGW7	165	E3 ubiquitin ligase compl	N/A	no	0.432	0.351	0.517	5e-09
D4ARL8	164	E3 ubiquitin ligase compl	N/A	no	0.447	0.365	0.516	6e-09
Q0CA59	161	E3 ubiquitin ligase compl	N/A	no	0.447	0.372	0.516	6e-09

>sp|O81057|ASK14_ARATH SKP1-like protein 14 OS=Arabidopsis thaliana GN=ASK14 PE=1 SV=1

 Score = 74.3 bits (181), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 48/131 (36%), Positives = 71/131 (54%), Gaps = 21/131 (16%)

Query: 14  FKVEEQGCSRLCSHSSTSDGTSEDMVVLQLP----------YIIKFCKAHGVSKEN---- 59
           F+VEE    +L           +D VV ++P           ++++CK H V +E+    
Sbjct: 16  FEVEEAVARKL---KIVEHMIEDDCVVTEVPLQNVTGKILSIVVEYCKKHVVDEESDEFK 72

Query: 60  ----EFGKGKSNDELKEMLLVADYLTIKDTLDYLAETLANRIKNKSVEYIRKFFGIENNF 115
               EF K      + ++LL A+YL IK  LD  A+T+A+RIK+K+ E IR+ F IEN+F
Sbjct: 73  TWDEEFMKKFDQPTVFQLLLAANYLNIKGLLDLSAQTVADRIKDKTPEEIREIFNIENDF 132

Query: 116 MPEEKEATRKE 126
            PEE+ A RKE
Sbjct: 133 TPEEEAAVRKE 143

Involved in ubiquitination and subsequent proteasomal degradation of target proteins. Together with CUL1, RBX1 and a F-box protein, it forms a SCF E3 ubiquitin ligase complex. The functional specificity of this complex depends of the type of F-box protein. In the SCF complex, it serves as an adapter that links the F-box protein to CUL1.
Arabidopsis thaliana (taxid: 3702)

>sp|O49484|ASK11_ARATH SKP1-like protein 11 OS=Arabidopsis thaliana GN=ASK11 PE=1 SV=1

 Score = 68.9 bits (167), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 46/133 (34%), Positives = 69/133 (51%), Gaps = 18/133 (13%)

Query: 12  QLFKVEEQGC--SRLCSHSSTSDGTSEDMVVLQ-----LPYIIKFCKAHGVSKENEFGKG 64
           Q F+VEE     S+  +H    D  ++ + +       L  +I++CK H V + N   + 
Sbjct: 14  QSFEVEEAVAIQSQTIAHMVEDDCVADGIPLANVESKILVKVIEYCKKHHVDEANPISEE 73

Query: 65  KSND-----------ELKEMLLVADYLTIKDTLDYLAETLANRIKNKSVEYIRKFFGIEN 113
             N+            + E++L A+YL IK  LD   +T+A+ IK K+ E IR  F IEN
Sbjct: 74  DLNNWDEKFMDLEQSTIFELILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRSTFNIEN 133

Query: 114 NFMPEEKEATRKE 126
           +F PEE+EA RKE
Sbjct: 134 DFTPEEEEAVRKE 146

Involved in ubiquitination and subsequent proteasomal degradation of target proteins. Together with CUL1, RBX1 and a F-box protein, it forms a SCF E3 ubiquitin ligase complex. The functional specificity of this complex depends of the type of F-box protein. In the SCF complex, it serves as an adapter that links the F-box protein to CUL1 (By similarity). Plays a role during early flowers reproductive development.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LSX8|ASK10_ARATH SKP1-like protein 10 OS=Arabidopsis thaliana GN=ASK10 PE=1 SV=1

 Score = 65.5 bits (158), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 45/145 (31%), Positives = 74/145 (51%), Gaps = 28/145 (19%)

Query: 5   IFEDGGQQLFKVEEQG---CSRLCSHSSTSDGTSEDMVVLQ-----LPYIIKFCKAHGVS 56
           I +      F+VEE+    C  + +H S  D T   + + +     L  +I++C  H V 
Sbjct: 7   ILKSSDGHSFEVEEEAACQCQTI-AHMSEDDCTDNGIPLPEVTGKILEMVIEYCNKHHVD 65

Query: 57  KENEFGKGKSNDELK---------------EMLLVADYLTIKDTLDYLAETLANRIKNKS 101
             N      S+++LK               ++++ A+YL IK  LD   +T+A+ IK+ +
Sbjct: 66  AANPC----SDEDLKKWDKEFMEKYQSTIFDLIMAANYLNIKSLLDLACQTVADMIKDNT 121

Query: 102 VEYIRKFFGIENNFMPEEKEATRKE 126
           VE+ RKFF IEN++  EE+EA R+E
Sbjct: 122 VEHTRKFFNIENDYTHEEEEAVRRE 146

Involved in ubiquitination and subsequent proteasomal degradation of target proteins. Together with CUL1, RBX1 and a F-box protein, it forms a SCF E3 ubiquitin ligase complex. The functional specificity of this complex depends of the type of F-box protein. In the SCF complex, it serves as an adapter that links the F-box protein to CUL1.

Arabidopsis thaliana (taxid: 3702)

>sp|O65674|ASK12_ARATH SKP1-like protein 12 OS=Arabidopsis thaliana GN=ASK12 PE=1 SV=1

 Score = 64.3 bits (155), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 46/133 (34%), Positives = 69/133 (51%), Gaps = 18/133 (13%)

Query: 12  QLFKVEEQGC--SRLCSHSSTSDGTSEDMVVLQ-----LPYIIKFCKAHGVSKENEFGKG 64
           Q F+VEE     S+  +H    D  ++ + +       L  +I++CK + V + N   + 
Sbjct: 14  QSFEVEEAVAIQSQTIAHMVEDDCVADGIPLANVESKILVKVIEYCKKYHVDEANPISEE 73

Query: 65  KSN--DE---------LKEMLLVADYLTIKDTLDYLAETLANRIKNKSVEYIRKFFGIEN 113
             N  DE         + E++L A+YL IK   D   +T+A+ IK K+ E IR  F IEN
Sbjct: 74  DLNKWDEKFMDLEQSTIFELILAANYLNIKSLFDLTCQTVADMIKGKTPEEIRSTFNIEN 133

Query: 114 NFMPEEKEATRKE 126
           +F PEE+EA RKE
Sbjct: 134 DFTPEEEEAVRKE 146

Involved in ubiquitination and subsequent proteasomal degradation of target proteins. Together with CUL1, RBX1 and a F-box protein, it forms a SCF E3 ubiquitin ligase complex. The functional specificity of this complex depends of the type of F-box protein. In the SCF complex, it serves as an adapter that links the F-box protein to CUL1 (By similarity). Plays a role during early flowers reproductive development.

Arabidopsis thaliana (taxid: 3702)

>sp|P52285|SKP1A_DICDI SCF ubiquitin ligase complex protein SKP1a OS=Dictyostelium discoideum GN=fpaA PE=1 SV=1

 Score = 62.4 bits (150), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 36/85 (42%), Positives = 47/85 (55%), Gaps = 13/85 (15%)

Query: 44  PYIIKFCKAHGVSKENEFGKGKSNDELKEMLLVADYLTIKDTLDYLAETLANRIKNKSVE 103
           PY   FCK    +             L E++L A+YL IK  LD   +T+AN I+ K+ E
Sbjct: 83  PYDRDFCKVDQPT-------------LFELILAANYLDIKPLLDVTCKTVANMIRGKTPE 129

Query: 104 YIRKFFGIENNFMPEEKEATRKEYE 128
            IRK F I+N+F PEE+E  RKE E
Sbjct: 130 EIRKIFNIKNDFTPEEEEQIRKENE 154

Dictyostelium discoideum (taxid: 44689)

>sp|Q557E4|SKP1B_DICDI SCF ubiquitin ligase complex protein SKP1b OS=Dictyostelium discoideum GN=fpaB-1 PE=1 SV=1

 Score = 62.4 bits (150), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 36/85 (42%), Positives = 47/85 (55%), Gaps = 13/85 (15%)

Query: 44  PYIIKFCKAHGVSKENEFGKGKSNDELKEMLLVADYLTIKDTLDYLAETLANRIKNKSVE 103
           PY   FCK    +             L E++L A+YL IK  LD   +T+AN I+ K+ E
Sbjct: 83  PYDRDFCKVDQPT-------------LFELILAANYLDIKPLLDVTCKTVANMIRGKTPE 129

Query: 104 YIRKFFGIENNFMPEEKEATRKEYE 128
            IRK F I+N+F PEE+E  RKE E
Sbjct: 130 EIRKIFNIKNDFTPEEEEQIRKENE 154

Dictyostelium discoideum (taxid: 44689)

>sp|Q9LSX9|ASK9_ARATH SKP1-like protein 9 OS=Arabidopsis thaliana GN=ASK9 PE=1 SV=1

 Score = 62.4 bits (150), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 44/145 (30%), Positives = 68/145 (46%), Gaps = 27/145 (18%)

Query: 5   IFEDGGQQLFKVEEQG---CSRLCSHSSTSDGTSEDMVVLQ-----LPYIIKFCKAHGVS 56
           I +      F+VEE+    C  + +H S +D T   + +       L  +I++C  H V 
Sbjct: 7   ILKSSDGHSFEVEEEAARQCQIIIAHMSENDCTDNGIPLPNVTGKILAMVIEYCNKHHVD 66

Query: 57  KENEFGKGKSNDELK---------------EMLLVADYLTIKDTLDYLAETLANRIKNKS 101
             N      S+D+LK               +++  A+YL IK   D   +T+A  IK  +
Sbjct: 67  AANPC----SDDDLKKWDKEFMEKDTSTIFDLIKAANYLNIKSLFDLACQTVAEIIKGNT 122

Query: 102 VEYIRKFFGIENNFMPEEKEATRKE 126
            E IR+FF IEN+  PEE+ A R+E
Sbjct: 123 PEQIREFFNIENDLTPEEEAAIRRE 147

Involved in ubiquitination and subsequent proteasomal degradation of target proteins. Together with CUL1, RBX1 and a F-box protein, it forms a SCF E3 ubiquitin ligase complex. The functional specificity of this complex depends of the type of F-box protein. In the SCF complex, it serves as an adapter that links the F-box protein to CUL1.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8TGW7|SKP1_ARTOT E3 ubiquitin ligase complex SCF subunit sconC OS=Arthroderma otae GN=sconC PE=2 SV=1

 Score = 59.7 bits (143), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 30/58 (51%), Positives = 40/58 (68%)

Query: 72  EMLLVADYLTIKDTLDYLAETLANRIKNKSVEYIRKFFGIENNFMPEEKEATRKEYEL 129
           E++L A+YL IK  LD   +T+AN IK KS E IRK F I+N+F PEE++  R+E E 
Sbjct: 104 EIILAANYLDIKALLDVGCKTVANMIKGKSPEEIRKTFNIQNDFTPEEEDQIRRENEW 161

Essential component of the SCF (SKP1-CUL1-F-box protein) E3 ubiquitin ligase complexes, which mediate the ubiquitination and subsequent proteasomal degradation of target proteins (By similarity). Controls sulfur metabolite repression, probably by mediating the inactivation or degradation of the metR transcription factor.

Arthroderma otae (taxid: 63405)

>sp|D4ARL8|SKP1_ARTBC E3 ubiquitin ligase complex SCF subunit sconC OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=sconC PE=3 SV=1

 Score = 59.7 bits (143), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 31/60 (51%), Positives = 41/60 (68%)

Query: 70  LKEMLLVADYLTIKDTLDYLAETLANRIKNKSVEYIRKFFGIENNFMPEEKEATRKEYEL 129
           L E++L A+YL IK  LD   +T+AN IK KS E IRK F I+N+F PEE++  R+E E 
Sbjct: 102 LFEIILAANYLDIKALLDVGCKTVANMIKGKSPEEIRKTFNIQNDFTPEEEDQIRRENEW 161

Essential component of the SCF (SKP1-CUL1-F-box protein) E3 ubiquitin ligase complexes, which mediate the ubiquitination and subsequent proteasomal degradation of target proteins. Controls sulfur metabolite repression, probably by mediating the inactivation or degradation of the metR transcription factor.

Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) (taxid: 663331)

>sp|Q0CA59|SKP1_ASPTN E3 ubiquitin ligase complex SCF subunit sconC OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=sconC PE=3 SV=1

 Score = 59.7 bits (143), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 31/60 (51%), Positives = 41/60 (68%)

Query: 70  LKEMLLVADYLTIKDTLDYLAETLANRIKNKSVEYIRKFFGIENNFMPEEKEATRKEYEL 129
           L E++L A+YL IK  LD   +T+AN IK KS E IRK F I+N+F PEE++  R+E E 
Sbjct: 99  LFEIILAANYLDIKGLLDVGCKTVANMIKGKSPEEIRKTFNIQNDFTPEEEDQIRRENEW 158

Essential component of the SCF (SKP1-CUL1-F-box protein) E3 ubiquitin ligase complexes, which mediate the ubiquitination and subsequent proteasomal degradation of target proteins. Controls sulfur metabolite repression, probably by mediating the inactivation or degradation of the metR transcription factor.

Aspergillus terreus (strain NIH 2624 / FGSC A1156) (taxid: 341663)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	134
118482935	184	unknown [Populus trichocarpa]	0.888	0.646	0.391	2e-15
224081401	151	predicted protein [Populus trichocarpa]	0.888	0.788	0.391	3e-15
338227616	180	SKP1 [Hevea brasiliensis]	0.843	0.627	0.370	1e-13
357451571	205	Fimbriata-associated protein [Medicago t	0.634	0.414	0.472	1e-13
357451617	196	Fimbriata-associated protein [Medicago t	0.634	0.433	0.450	6e-13
386688462	177	SFB-interacting Skp1-like protein 1 [Pru	0.865	0.655	0.347	6e-13
224139636	153	predicted protein [Populus trichocarpa]	0.597	0.522	0.505	1e-11
18395497	149	S-phase kinase-associated protein 1 [Ara	0.820	0.738	0.366	2e-11
451320833	190	SLF-interacting Skp1-like protein 1 [Pyr	0.514	0.363	0.463	7e-11
356555221	183	PREDICTED: SCF ubiquitin ligase complex	0.828	0.606	0.373	1e-10

>gi|118482935|gb|ABK93380.1| unknown [Populus trichocarpa]

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 54/138 (39%), Positives = 75/138 (54%), Gaps = 19/138 (13%)

Query: 9   GGQQLFKVEEQGCSRLC--------SHSSTSDGTSEDMVVLQLPYIIKFCKAHGVSKEN- 59
              Q+F+VEE               S SST      ++    L  +I+FCK     K N 
Sbjct: 37  SDNQIFEVEEAVAMEFATVKSFFEDSPSSTDTVPLPNVTAKPLSQVIEFCKEQIKFKANP 96

Query: 60  ----------EFGKGKSNDELKEMLLVADYLTIKDTLDYLAETLANRIKNKSVEYIRKFF 109
                     EF K KS+ +L +M+ VA+YL IKD LD L + +A+RI+NKSVEY+R FF
Sbjct: 97  DEAQKKKYHSEFLKEKSDKDLVDMIPVANYLEIKDLLDVLNQAVADRIENKSVEYVRSFF 156

Query: 110 GIENNFMPEEKEATRKEY 127
           GI+N+F  EE+ A R+E+
Sbjct: 157 GIDNDFTAEEEAALRQEH 174

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224081401|ref|XP_002306396.1| predicted protein [Populus trichocarpa] gi|222855845|gb|EEE93392.1| predicted protein [Populus trichocarpa]

 Score = 86.7 bits (213), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 54/138 (39%), Positives = 75/138 (54%), Gaps = 19/138 (13%)

Query: 9   GGQQLFKVEEQGCSRLC--------SHSSTSDGTSEDMVVLQLPYIIKFCKAHGVSKEN- 59
              Q+F+VEE               S SST      ++    L  +I+FCK     K N 
Sbjct: 9   SDNQIFEVEEAVAMEFATVKSFFEDSPSSTDTVPLPNVTAKPLSQVIEFCKEQIKFKANP 68

Query: 60  ----------EFGKGKSNDELKEMLLVADYLTIKDTLDYLAETLANRIKNKSVEYIRKFF 109
                     EF K KS+ +L +M+ VA+YL IKD LD L + +A+RI+NKSVEY+R FF
Sbjct: 69  DEAQKKKYHSEFLKEKSDKDLVDMIPVANYLEIKDLLDVLNQAVADRIENKSVEYVRSFF 128

Query: 110 GIENNFMPEEKEATRKEY 127
           GI+N+F  EE+ A R+E+
Sbjct: 129 GIDNDFTAEEEAALRQEH 146

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|338227616|gb|AEI90837.1| SKP1 [Hevea brasiliensis]

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 50/135 (37%), Positives = 76/135 (56%), Gaps = 22/135 (16%)

Query: 14  FKVEEQGCSRLCSHSSTSDGTSEDM--VVLQLP--------YIIKFCK------AHGVSK 57
           F+VEE       +  +  D  +E     V+ LP         II++CK      A    +
Sbjct: 35  FEVEEPVAMEFATVKTFFDDNTETTFGTVIPLPNVLAEPLSLIIQYCKRNLKFRAESAPE 94

Query: 58  EN------EFGKGKSNDELKEMLLVADYLTIKDTLDYLAETLANRIKNKSVEYIRKFFGI 111
           +       +F K  SN++L+E++L  +YL +K+ LD L + +A+RIKNKSVEY+R+FFGI
Sbjct: 95  DARKAYDADFVKELSNEQLRELILAVNYLDVKNLLDVLNQAVADRIKNKSVEYVRQFFGI 154

Query: 112 ENNFMPEEKEATRKE 126
           EN+F PEE+   R+E
Sbjct: 155 ENDFTPEEEARLREE 169

Source: Hevea brasiliensis

Species: Hevea brasiliensis

Genus: Hevea

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357451571|ref|XP_003596062.1| Fimbriata-associated protein [Medicago truncatula] gi|355485110|gb|AES66313.1| Fimbriata-associated protein [Medicago truncatula]

 Score = 80.9 bits (198), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 43/91 (47%), Positives = 65/91 (71%), Gaps = 6/91 (6%)

Query: 42  QLPYIIKFCK---AHGVSK--ENEFGKGKSNDELKEMLLVADYLTIKDTLDYLAETLANR 96
           +LP IIK+C+   A  ++K  E EF K   N+E+K++ L A+YL  K  LD+ ++ +A+R
Sbjct: 83  ELPLIIKYCEKNVAGEINKAFEAEFVKNLDNEEVKDLFLAANYLDTKKLLDFTSQVIADR 142

Query: 97  IKNKSVEYIRKFFGIENN-FMPEEKEATRKE 126
           I+NKSVEY+RK+FGIE+  F+P E+E  R+E
Sbjct: 143 IENKSVEYVRKYFGIEDTEFLPGEEEKLREE 173

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357451617|ref|XP_003596085.1| Fimbriata-associated protein [Medicago truncatula] gi|355485133|gb|AES66336.1| Fimbriata-associated protein [Medicago truncatula]

 Score = 79.0 bits (193), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 41/91 (45%), Positives = 65/91 (71%), Gaps = 6/91 (6%)

Query: 42  QLPYIIKFCK---AHGVSK--ENEFGKGKSNDELKEMLLVADYLTIKDTLDYLAETLANR 96
           +LP II++C+   A  ++K  E EF K   N+E+K++ L A+YL +K  LD+ ++ +A+R
Sbjct: 66  ELPLIIEYCEKNVAGEINKAFEAEFVKNLDNEEVKDLFLAANYLDMKKLLDFTSQVIADR 125

Query: 97  IKNKSVEYIRKFFGIENN-FMPEEKEATRKE 126
           I NKSVEY+RK+FG+E+  F+P E+E  R+E
Sbjct: 126 IANKSVEYVRKYFGVEDTEFLPGEEEKLREE 156

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|386688462|gb|AFJ21661.1| SFB-interacting Skp1-like protein 1 [Prunus avium]

 Score = 79.0 bits (193), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 49/141 (34%), Positives = 78/141 (55%), Gaps = 25/141 (17%)

Query: 12  QLFKVEEQGCSRLCSHSS--TSDGTSEDMVV-------LQLPYIIKFC------KAHGVS 56
           ++F++EE       +  +    +G S +MV+        +L  II FC      K     
Sbjct: 27  EVFEIEENVAMEFHTVKAFFQDEGVSREMVMPILNVNSAELVKIINFCTKTLELKRKADH 86

Query: 57  KEN----------EFGKGKSNDELKEMLLVADYLTIKDTLDYLAETLANRIKNKSVEYIR 106
           +EN          +F K ++ + + E++L ADYL + D L+ L + +A+RIKNKSVEY+R
Sbjct: 87  EENAKKELRLFYKDFVKDETTEHIMELILAADYLHVDDLLEVLNQCVADRIKNKSVEYVR 146

Query: 107 KFFGIENNFMPEEKEATRKEY 127
           K FG+EN+F PEE++  R+EY
Sbjct: 147 KLFGVENDFTPEEEQKLREEY 167

Source: Prunus avium

Species: Prunus avium

Genus: Prunus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224139636|ref|XP_002323204.1| predicted protein [Populus trichocarpa] gi|222867834|gb|EEF04965.1| predicted protein [Populus trichocarpa]

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 47/93 (50%), Positives = 61/93 (65%), Gaps = 13/93 (13%)

Query: 40  VLQLPY--IIKFCKAHGVSKENE-----------FGKGKSNDELKEMLLVADYLTIKDTL 86
           +L  P+   I+FCK H + KEN            F K KSN+EL +M+ VA YL  +D L
Sbjct: 48  ILAKPFSQFIEFCKEHVMFKENPDKEKQKKISEFFLKEKSNEELLDMITVAKYLEAEDLL 107

Query: 87  DYLAETLANRIKNKSVEYIRKFFGIENNFMPEE 119
           D L++  A+RI+NKSVEY+RKFFGIEN+F PEE
Sbjct: 108 DLLSQAAADRIQNKSVEYMRKFFGIENDFTPEE 140

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18395497|ref|NP_565296.1| S-phase kinase-associated protein 1 [Arabidopsis thaliana] gi|75318731|sp|O81057.1|ASK14_ARATH RecName: Full=SKP1-like protein 14; Short=AtSK14 gi|3548813|gb|AAC34485.1| E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 (At14), putative [Arabidopsis thaliana] gi|67633516|gb|AAY78682.1| putative E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 [Arabidopsis thaliana] gi|330250577|gb|AEC05671.1| S-phase kinase-associated protein 1 [Arabidopsis thaliana]

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 48/131 (36%), Positives = 71/131 (54%), Gaps = 21/131 (16%)

Query: 14  FKVEEQGCSRLCSHSSTSDGTSEDMVVLQLP----------YIIKFCKAHGVSKEN---- 59
           F+VEE    +L           +D VV ++P           ++++CK H V +E+    
Sbjct: 16  FEVEEAVARKL---KIVEHMIEDDCVVTEVPLQNVTGKILSIVVEYCKKHVVDEESDEFK 72

Query: 60  ----EFGKGKSNDELKEMLLVADYLTIKDTLDYLAETLANRIKNKSVEYIRKFFGIENNF 115
               EF K      + ++LL A+YL IK  LD  A+T+A+RIK+K+ E IR+ F IEN+F
Sbjct: 73  TWDEEFMKKFDQPTVFQLLLAANYLNIKGLLDLSAQTVADRIKDKTPEEIREIFNIENDF 132

Query: 116 MPEEKEATRKE 126
            PEE+ A RKE
Sbjct: 133 TPEEEAAVRKE 143

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|451320833|emb|CCH26218.1| SLF-interacting Skp1-like protein 1 [Pyrus x bretschneideri]

 Score = 72.0 bits (175), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 32/69 (46%), Positives = 49/69 (71%)

Query: 59  NEFGKGKSNDELKEMLLVADYLTIKDTLDYLAETLANRIKNKSVEYIRKFFGIENNFMPE 118
           N+F K ++   + E+ L ADYL +   L+ L + +A+RIKNKSVEY+R+ FG+E++F PE
Sbjct: 112 NDFVKDETTGNVMELTLAADYLNVDQMLEVLNQCVADRIKNKSVEYVRQLFGVESDFTPE 171

Query: 119 EKEATRKEY 127
           E++  R EY
Sbjct: 172 EEQKLRDEY 180

Source: Pyrus x bretschneideri

Species: Pyrus x bretschneideri

Genus: Pyrus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356555221|ref|XP_003545933.1| PREDICTED: SCF ubiquitin ligase complex protein SKP1b-like [Glycine max]

 Score = 71.2 bits (173), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 46/123 (37%), Positives = 70/123 (56%), Gaps = 12/123 (9%)

Query: 13  LFKVEEQGCSRLCS-HSSTSDGTSEDMVVLQLP--------YIIKFCKAHGVSKENEFGK 63
           +F+VE      + +  +   D  +E  + + LP         I++F KA G  +E  F K
Sbjct: 52  IFEVEPSIVKEMVTIQTFIEDNNNETSIPIPLPNVTSNTLRRILEF-KARGFDEE--FVK 108

Query: 64  GKSNDELKEMLLVADYLTIKDTLDYLAETLANRIKNKSVEYIRKFFGIENNFMPEEKEAT 123
               DE+ E++L A+YL +K  LD L + +A+ IKNKSVE++RKFF I N+F PEE+   
Sbjct: 109 TLGMDEVFELILAANYLNMKTLLDILTKIIADFIKNKSVEFVRKFFNIVNDFTPEEEAKI 168

Query: 124 RKE 126
           R+E
Sbjct: 169 REE 171

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	134
TAIR|locus:2056956	149	SK14 "AT2G03170" [Arabidopsis	0.626	0.563	0.434	1.6e-13
TAIR|locus:2124281	152	SK11 "AT4G34210" [Arabidopsis	0.865	0.763	0.343	1.2e-12
TAIR|locus:2165825	171	ASK2 "AT5G42190" [Arabidopsis	0.507	0.397	0.449	1.8e-12
TAIR|locus:2093094	152	SK10 "AT3G21860" [Arabidopsis	0.835	0.736	0.333	6.4e-12
TAIR|locus:2139504	152	SK12 "AT4G34470" [Arabidopsis	0.865	0.763	0.328	1.3e-11
TAIR|locus:2056931	170	SK16 "AT2G03190" [Arabidopsis	0.5	0.394	0.373	1.9e-11
DICTYBASE|DDB_G0269230	162	fpaA "ubiquitin ligase subunit	0.440	0.364	0.525	1.2e-10
DICTYBASE|DDB_G0273615	162	fpaB-2 "ubiquitin ligase subun	0.440	0.364	0.525	1.2e-10
DICTYBASE|DDB_G0273251	162	fpaB-1 "ubiquitin ligase subun	0.440	0.364	0.525	1.2e-10
TAIR|locus:2056966	200	SK19 "AT2G03160" [Arabidopsis	0.410	0.275	0.418	1.3e-10

TAIR|locus:2056956 SK14 "AT2G03170" [Arabidopsis thaliana (taxid:3702)]

 Score = 176 (67.0 bits), Expect = 1.6e-13, P = 1.6e-13
 Identities = 40/92 (43%), Positives = 58/92 (63%)

Query:    43 LPYIIKFCKAHGVSKEN--------EFGKGKSNDELKEMLLVADYLTIKDTLDYLAETLA 94
             L  ++++CK H V +E+        EF K      + ++LL A+YL IK  LD  A+T+A
Sbjct:    52 LSIVVEYCKKHVVDEESDEFKTWDEEFMKKFDQPTVFQLLLAANYLNIKGLLDLSAQTVA 111

Query:    95 NRIKNKSVEYIRKFFGIENNFMPEEKEATRKE 126
             +RIK+K+ E IR+ F IEN+F PEE+ A RKE
Sbjct:   112 DRIKDKTPEEIREIFNIENDFTPEEEAAVRKE 143

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA;TAS

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2124281 SK11 "AT4G34210" [Arabidopsis thaliana (taxid:3702)]

 Score = 168 (64.2 bits), Expect = 1.2e-12, P = 1.2e-12
 Identities = 44/128 (34%), Positives = 67/128 (52%)

Query:    11 QQLFKVEEQGCSRLCSHSSTSDGTSEDMVVLQ-LPYIIKFCKAHGVSKENEFGKGKSN-- 67
             ++   ++ Q  + +      +DG     V  + L  +I++CK H V + N   +   N  
Sbjct:    19 EEAVAIQSQTIAHMVEDDCVADGIPLANVESKILVKVIEYCKKHHVDEANPISEEDLNNW 78

Query:    68 DE---------LKEMLLVADYLTIKDTLDYLAETLANRIKNKSVEYIRKFFGIENNFMPE 118
             DE         + E++L A+YL IK  LD   +T+A+ IK K+ E IR  F IEN+F PE
Sbjct:    79 DEKFMDLEQSTIFELILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRSTFNIENDFTPE 138

Query:   119 EKEATRKE 126
             E+EA RKE
Sbjct:   139 EEEAVRKE 146

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2165825 ASK2 "AT5G42190" [Arabidopsis thaliana (taxid:3702)]

 Score = 141 (54.7 bits), Expect = 1.8e-12, Sum P(2) = 1.8e-12
 Identities = 31/69 (44%), Positives = 45/69 (65%)

Query:    58 ENEFGKGKSNDELKEMLLVADYLTIKDTLDYLAETLANRIKNKSVEYIRKFFGIENNFMP 117
             ++EF K      L +++L A+YL IK  LD   +T+A+ IK K+ E IRK F I+N+F P
Sbjct:    98 DSEFIK-VDQGTLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTP 156

Query:   118 EEKEATRKE 126
             EE+E  R+E
Sbjct:   157 EEEEEVRRE 165

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0005737 "cytoplasm" evidence=NAS

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA;RCA;TAS

GO:0019005 "SCF ubiquitin ligase complex" evidence=NAS

GO:0005515 "protein binding" evidence=IPI

GO:0009793 "embryo development ending in seed dormancy" evidence=IGI

GO:0042023 "DNA endoreduplication" evidence=RCA

GO:0042752 "regulation of circadian rhythm" evidence=RCA

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=RCA

GO:0043248 "proteasome assembly" evidence=RCA

GO:0051510 "regulation of unidimensional cell growth" evidence=RCA

GO:0051788 "response to misfolded protein" evidence=RCA

TAIR|locus:2093094 SK10 "AT3G21860" [Arabidopsis thaliana (taxid:3702)]

 Score = 161 (61.7 bits), Expect = 6.4e-12, P = 6.4e-12
 Identities = 44/132 (33%), Positives = 71/132 (53%)

Query:    14 FKVEEQG-CS-RLCSHSSTSDGTSEDMVVLQ-----LPYIIKFCKAHGVSKEN------- 59
             F+VEE+  C  +  +H S  D T   + + +     L  +I++C  H V   N       
Sbjct:    16 FEVEEEAACQCQTIAHMSEDDCTDNGIPLPEVTGKILEMVIEYCNKHHVDAANPCSDEDL 75

Query:    60 -----EFGKGKSNDELKEMLLVADYLTIKDTLDYLAETLANRIKNKSVEYIRKFFGIENN 114
                  EF + K    + ++++ A+YL IK  LD   +T+A+ IK+ +VE+ RKFF IEN+
Sbjct:    76 KKWDKEFME-KYQSTIFDLIMAANYLNIKSLLDLACQTVADMIKDNTVEHTRKFFNIEND 134

Query:   115 FMPEEKEATRKE 126
             +  EE+EA R+E
Sbjct:   135 YTHEEEEAVRRE 146

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA;TAS

GO:0019005 "SCF ubiquitin ligase complex" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0042023 "DNA endoreduplication" evidence=RCA

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=RCA

GO:0043248 "proteasome assembly" evidence=RCA

GO:0051510 "regulation of unidimensional cell growth" evidence=RCA

GO:0051788 "response to misfolded protein" evidence=RCA

TAIR|locus:2139504 SK12 "AT4G34470" [Arabidopsis thaliana (taxid:3702)]

 Score = 158 (60.7 bits), Expect = 1.3e-11, P = 1.3e-11
 Identities = 42/128 (32%), Positives = 66/128 (51%)

Query:    11 QQLFKVEEQGCSRLCSHSSTSDGTSEDMVVLQ-LPYIIKFCKAHGVSKENEFGKGKSN-- 67
             ++   ++ Q  + +      +DG     V  + L  +I++CK + V + N   +   N  
Sbjct:    19 EEAVAIQSQTIAHMVEDDCVADGIPLANVESKILVKVIEYCKKYHVDEANPISEEDLNKW 78

Query:    68 DE---------LKEMLLVADYLTIKDTLDYLAETLANRIKNKSVEYIRKFFGIENNFMPE 118
             DE         + E++L A+YL IK   D   +T+A+ IK K+ E IR  F IEN+F PE
Sbjct:    79 DEKFMDLEQSTIFELILAANYLNIKSLFDLTCQTVADMIKGKTPEEIRSTFNIENDFTPE 138

Query:   119 EKEATRKE 126
             E+EA RKE
Sbjct:   139 EEEAVRKE 146

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA;ISS

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2056931 SK16 "AT2G03190" [Arabidopsis thaliana (taxid:3702)]

 Score = 133 (51.9 bits), Expect = 1.9e-11, Sum P(2) = 1.9e-11
 Identities = 25/67 (37%), Positives = 44/67 (65%)

Query:    60 EFGKGKSNDELKEMLLVADYLTIKDTLDYLAETLANRIKNKSVEYIRKFFGIENNFMPEE 119
             EF K    + + +++L  +YL ++D L    +T+A+ +K+ S E +R+ F IEN++ PEE
Sbjct:    95 EFMKEFDMETVMKLILAVNYLNVQDLLGLTCQTVADHMKDMSPEEVRELFNIENDYTPEE 154

Query:   120 KEATRKE 126
             ++A RKE
Sbjct:   155 EDAIRKE 161

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA;TAS

GO:0019005 "SCF ubiquitin ligase complex" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

DICTYBASE|DDB_G0269230 fpaA "ubiquitin ligase subunit SKP1" [Dictyostelium discoideum (taxid:44689)]

 Score = 149 (57.5 bits), Expect = 1.2e-10, P = 1.2e-10
 Identities = 31/59 (52%), Positives = 41/59 (69%)

Query:    70 LKEMLLVADYLTIKDTLDYLAETLANRIKNKSVEYIRKFFGIENNFMPEEKEATRKEYE 128
             L E++L A+YL IK  LD   +T+AN I+ K+ E IRK F I+N+F PEE+E  RKE E
Sbjct:    96 LFELILAANYLDIKPLLDVTCKTVANMIRGKTPEEIRKIFNIKNDFTPEEEEQIRKENE 154

GO:0005515 "protein binding" evidence=IPI

GO:0030587 "sorocarp development" evidence=IMP

GO:0005938 "cell cortex" evidence=IDA

GO:0005634 "nucleus" evidence=IEA;IDA

GO:0016567 "protein ubiquitination" evidence=TAS

GO:0019005 "SCF ubiquitin ligase complex" evidence=ISS

GO:0005737 "cytoplasm" evidence=IEA;IDA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

DICTYBASE|DDB_G0273615 fpaB-2 "ubiquitin ligase subunit SKP1" [Dictyostelium discoideum (taxid:44689)]

 Score = 149 (57.5 bits), Expect = 1.2e-10, P = 1.2e-10
 Identities = 31/59 (52%), Positives = 41/59 (69%)

Query:    70 LKEMLLVADYLTIKDTLDYLAETLANRIKNKSVEYIRKFFGIENNFMPEEKEATRKEYE 128
             L E++L A+YL IK  LD   +T+AN I+ K+ E IRK F I+N+F PEE+E  RKE E
Sbjct:    96 LFELILAANYLDIKPLLDVTCKTVANMIRGKTPEEIRKIFNIKNDFTPEEEEQIRKENE 154

GO:0030587 "sorocarp development" evidence=IMP

GO:0005938 "cell cortex" evidence=IDA

GO:0005634 "nucleus" evidence=IEA;IDA

GO:0016567 "protein ubiquitination" evidence=TAS

GO:0019005 "SCF ubiquitin ligase complex" evidence=ISS

GO:0005737 "cytoplasm" evidence=IEA;IDA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

DICTYBASE|DDB_G0273251 fpaB-1 "ubiquitin ligase subunit SKP1" [Dictyostelium discoideum (taxid:44689)]

 Score = 149 (57.5 bits), Expect = 1.2e-10, P = 1.2e-10
 Identities = 31/59 (52%), Positives = 41/59 (69%)

Query:    70 LKEMLLVADYLTIKDTLDYLAETLANRIKNKSVEYIRKFFGIENNFMPEEKEATRKEYE 128
             L E++L A+YL IK  LD   +T+AN I+ K+ E IRK F I+N+F PEE+E  RKE E
Sbjct:    96 LFELILAANYLDIKPLLDVTCKTVANMIRGKTPEEIRKIFNIKNDFTPEEEEQIRKENE 154

GO:0030587 "sorocarp development" evidence=IMP

GO:0005938 "cell cortex" evidence=IDA

GO:0005634 "nucleus" evidence=IEA;IDA

GO:0016567 "protein ubiquitination" evidence=TAS

GO:0019005 "SCF ubiquitin ligase complex" evidence=ISS

GO:0005737 "cytoplasm" evidence=IEA;IDA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

TAIR|locus:2056966 SK19 "AT2G03160" [Arabidopsis thaliana (taxid:3702)]

 Score = 126 (49.4 bits), Expect = 1.3e-10, Sum P(2) = 1.3e-10
 Identities = 23/55 (41%), Positives = 39/55 (70%)

Query:    72 EMLLVADYLTIKDTLDYLAETLANRIKNKSVEYIRKFFGIENNFMPEEKEATRKE 126
             +++L A+YL ++   D  ++T+A+ IK+ + E +R+ F IEN+F PEE+EA R E
Sbjct:   130 DIILAANYLNVQGLFDLCSKTIADYIKDMTPEEVRELFNIENDFTPEEEEAIRNE 184

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: gw1.V.3408.1 SubName- Full=Putative uncharacterized protein; (151 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	134
pfam01466	78	pfam01466, Skp1, Skp1 family, dimerisation domain	1e-17
COG5201	158	COG5201, SKP1, SCF ubiquitin ligase, SKP1 componen	2e-12

>gnl|CDD|201810 pfam01466, Skp1, Skp1 family, dimerisation domain

 Score = 71.4 bits (176), Expect = 1e-17
 Identities = 31/62 (50%), Positives = 42/62 (67%)

Query: 67  NDELKEMLLVADYLTIKDTLDYLAETLANRIKNKSVEYIRKFFGIENNFMPEEKEATRKE 126
            D L +++L A+YL IK  LD   + +A+ IK K+ E IR+ FGIEN+F PEE+E  RKE
Sbjct: 13  QDTLFDLILAANYLNIKGLLDLACQKVADMIKGKTPEEIREIFGIENDFTPEEEEEIRKE 72

Query: 127 YE 128
            E
Sbjct: 73  NE 74

Length = 78

>gnl|CDD|227528 COG5201, SKP1, SCF ubiquitin ligase, SKP1 component [Posttranslational modification, protein turnover, chaperones]

 Score = 60.3 bits (146), Expect = 2e-12
 Identities = 29/62 (46%), Positives = 38/62 (61%)

Query: 67  NDELKEMLLVADYLTIKDTLDYLAETLANRIKNKSVEYIRKFFGIENNFMPEEKEATRKE 126
            + L E+ L A+YL IK  LD   + +A  I+ KS E IR+ F IEN+F PEE+   RKE
Sbjct: 92  QEMLLEICLAANYLEIKPLLDLGCKIVAEMIRGKSPEEIRETFNIENDFTPEEERRIRKE 151

Query: 127 YE 128
            E
Sbjct: 152 NE 153

Length = 158

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	134
COG5201	158	SKP1 SCF ubiquitin ligase, SKP1 component [Posttra	100.0
KOG1724	162	consensus SCF ubiquitin ligase, Skp1 component [Po	100.0
PF01466	78	Skp1: Skp1 family, dimerisation domain; InterPro:	99.96
smart00512	104	Skp1 Found in Skp1 protein family. Family of Skp1	99.85
PF03931	62	Skp1_POZ: Skp1 family, tetramerisation domain; Int	99.6
KOG3473	112	consensus RNA polymerase II transcription elongati	99.14
PF00651	111	BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (	97.69
PHA02713	557	hypothetical protein; Provisional	97.4
PHA03098	534	kelch-like protein; Provisional	97.36
smart00225	90	BTB Broad-Complex, Tramtrack and Bric a brac. Doma	97.35
PHA02790	480	Kelch-like protein; Provisional	96.16
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	95.27
KOG2716	230	consensus Polymerase delta-interacting protein PDI	94.86
KOG3433	203	consensus Protein involved in meiotic recombinatio	93.36
COG5124	209	Protein predicted to be involved in meiotic recomb	93.16
PF03962	188	Mnd1: Mnd1 family; InterPro: IPR005647 This family	83.44
PF11822	317	DUF3342: Domain of unknown function (DUF3342); Int	80.76

>COG5201 SKP1 SCF ubiquitin ligase, SKP1 component [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=5.3e-43  Score=245.82  Aligned_cols=128  Identities=33%  Similarity=0.398  Sum_probs=119.5

Q ss_pred             ceEEEeCCCCEEEecHHHHHH--HHhhccCCCCCC-CCceecc------hHHHHHHHHhcCCC-----------c-----
Q 046604            3 ENIFEDGGQQLFKVEEQGCSR--LCSHSSTSDGTS-EDMVVLQ------LPYIIKFCKAHGVS-----------K-----   57 (134)
Q Consensus         3 ~i~l~S~DG~~f~V~~~~~~~--~i~~~~le~~~~-~~~Ipl~------L~~Iie~c~~h~~~-----------k-----   57 (134)
                      +|.|+|+||++|+|+...|..  +|++| +.+.++ .-|||+|      |.+|++||+||+..           |     
T Consensus         3 ~i~l~s~dge~F~vd~~iAerSiLikN~-l~d~~~~n~p~p~pnVrSsvl~kv~ew~ehh~~s~sede~d~~~rks~p~D   81 (158)
T COG5201           3 MIELESIDGEIFRVDENIAERSILIKNM-LCDSTACNYPIPAPNVRSSVLMKVQEWMEHHTSSLSEDENDLEIRKSKPSD   81 (158)
T ss_pred             ceEEEecCCcEEEehHHHHHHHHHHHHH-hccccccCCCCcccchhHHHHHHHHHHHHhccccCCCccChHhhhccCCcc
Confidence            689999999999999999999  99999 888765 3688888      99999999999875           1     


Q ss_pred             --ccccccCCChHHHHHHHHhhccccchhHHHHHHHHHHHHhcCCCHHHHHHHhCCCCCCCHHHHHHHHHhchhhhh
Q 046604           58 --ENEFGKGKSNDELKEMLLVADYLTIKDTLDYLAETLANRIKNKSVEYIRKFFGIENNFMPEEKEATRKEYELLRL  132 (134)
Q Consensus        58 --D~~F~~~~~~~~l~~Li~AA~yL~I~~Ll~l~~~~iA~~i~gks~eeir~~f~i~~d~t~eee~~i~~e~~w~~~  132 (134)
                        |+.|+++ |+++|++++.|||||+|++|+++||+.||.+|+||||+|||++|||++||||||+++||+||.|+++
T Consensus        82 ~wdr~Fm~v-DqemL~eI~laaNYL~ikpLLd~gCKivaemirgkSpeeir~tfni~ndfTpEEe~~irkEnEWaed  157 (158)
T COG5201          82 FWDRFFMEV-DQEMLLEICLAANYLEIKPLLDLGCKIVAEMIRGKSPEEIRETFNIENDFTPEEERRIRKENEWAED  157 (158)
T ss_pred             HHHHHHHHh-hHHHHHHHHHhhccccchHHHHHHHHHHHHHHccCCHHHHHHHhCCCCCCCHHHHHHHHHhcccccc
Confidence              7788888 9999999999999999999999999999999999999999999999999999999999999999975

>KOG1724 consensus SCF ubiquitin ligase, Skp1 component [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=8.7e-43  Score=255.47  Aligned_cols=129  Identities=36%  Similarity=0.504  Sum_probs=117.7

Q ss_pred             CceEEEeCCCCEEEecHHHHHH--HHhhccCCCC-CCCC--ceecc------hHHHHHHHHhcCCC-----------c--
Q 046604            2 EENIFEDGGQQLFKVEEQGCSR--LCSHSSTSDG-TSED--MVVLQ------LPYIIKFCKAHGVS-----------K--   57 (134)
Q Consensus         2 ~~i~l~S~DG~~f~V~~~~~~~--~i~~~~le~~-~~~~--~Ipl~------L~~Iie~c~~h~~~-----------k--   57 (134)
                      ..|+|+||||++|.|+.++|++  +|+++ +.+. +..+  +||||      |++||+||+||+.+           +  
T Consensus         5 ~~ikL~SsDG~~f~ve~~~a~~s~~i~~~-~~~~~~~~~~~~IPl~nV~~~iL~kVIewC~~Hk~d~~~~~~~~~~~~~~   83 (162)
T KOG1724|consen    5 KKIKLESSDGEIFEVEEEVARQSQTISAH-MIEDGCADENDPIPLPNVTSKILKKVIEWCKKHKDDDPANPEDKELPEET   83 (162)
T ss_pred             CeEEEEccCCceeehhHHHHHHhHHHHHH-HHHcCCCccCCccccCccCHHHHHHHHHHHHHcccccccccccccccccC
Confidence            3689999999999999999999  87776 5543 3444  89999      99999999999964           1  


Q ss_pred             -----ccccccCCChHHHHHHHHhhccccchhHHHHHHHHHHHHhcCCCHHHHHHHhCCCCCCCHHHHHHHHHhchhhhh
Q 046604           58 -----ENEFGKGKSNDELKEMLLVADYLTIKDTLDYLAETLANRIKNKSVEYIRKFFGIENNFMPEEKEATRKEYELLRL  132 (134)
Q Consensus        58 -----D~~F~~~~~~~~l~~Li~AA~yL~I~~Ll~l~~~~iA~~i~gks~eeir~~f~i~~d~t~eee~~i~~e~~w~~~  132 (134)
                           |++|++. +...||+|+.|||||+|++|+++||+.||+|++||||+|+|..|||++|+||||+++++++|.|++.
T Consensus        84 ~i~~WD~~Flk~-d~~tLfdli~AAnyLdi~gLl~~~ck~va~mikgktpeEir~~f~I~~d~t~eE~~~~~~e~~~~~~  162 (162)
T KOG1724|consen   84 DIPEWDAEFLKV-DQGTLFDLILAANYLDIKGLLDLTCKTVANMIKGKTPEEIREIFNIENDETPEEEEAIRKENEWAFE  162 (162)
T ss_pred             CccHHHHHHHhc-CHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHccCCHHHHHHHcCCCCCCChhHHHHHhhccccccC
Confidence                 8999995 9999999999999999999999999999999999999999999999999999999999999999974

>PF01466 Skp1: Skp1 family, dimerisation domain; InterPro: IPR016072 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []

Probab=99.96  E-value=2.1e-29  Score=164.81  Aligned_cols=73  Identities=51%  Similarity=0.679  Sum_probs=64.6

Q ss_pred             ccccccCCChHHHHHHHHhhccccchhHHHHHHHHHHHHhcCCCHHHHHHHhCCCCCCCHHHHHHHHHhchhhh
Q 046604           58 ENEFGKGKSNDELKEMLLVADYLTIKDTLDYLAETLANRIKNKSVEYIRKFFGIENNFMPEEKEATRKEYELLR  131 (134)
Q Consensus        58 D~~F~~~~~~~~l~~Li~AA~yL~I~~Ll~l~~~~iA~~i~gks~eeir~~f~i~~d~t~eee~~i~~e~~w~~  131 (134)
                      |++|++. +.+.|++|+.||+||+|++|+++||++||++++||||+|||++|||++|+|+||++++|+||+|++
T Consensus         5 D~~F~~~-~~~~L~~l~~AA~yL~I~~L~~~~~~~iA~~i~gks~eeir~~fgi~~d~t~eee~~i~~e~~w~~   77 (78)
T PF01466_consen    5 DQEFLDV-DNDELFDLLNAANYLDIKGLLDLCCKYIANMIKGKSPEEIRKYFGIENDLTPEEEEEIRKENEWAF   77 (78)
T ss_dssp             HHHHT-S--HHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-HHHHHHHHT---TSSHHHHHHHHHHCCCTB
T ss_pred             HHHHHHc-CHHHHHHHHHHHHHHcchHHHHHHHHHHHHHhcCCCHHHHHHHcCCCCCCCHHHHHHHHHHcchhc
Confidence            7899966 999999999999999999999999999999999999999999999999999999999999999997

It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a dimerisation domain found at the C-terminal of SKP1 proteins [], as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. This domain is multi-helical in structure, and consists of an interlocked herterodimer in F-box proteins.; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 2P1O_A 3OGL_G 3OGM_A 3C6O_A 2P1N_A 2P1Q_A 3OGK_I 3C6N_A 3C6P_A 2P1P_A ....

>smart00512 Skp1 Found in Skp1 protein family

Probab=99.85  E-value=2.1e-21  Score=132.82  Aligned_cols=79  Identities=24%  Similarity=0.364  Sum_probs=70.2

Q ss_pred             CceEEEeCCCCEEEecHHHHHH--HHhhccCCCCCCC----Cceecc------hHHHHHHHHhcCCCc------------
Q 046604            2 EENIFEDGGQQLFKVEEQGCSR--LCSHSSTSDGTSE----DMVVLQ------LPYIIKFCKAHGVSK------------   57 (134)
Q Consensus         2 ~~i~l~S~DG~~f~V~~~~~~~--~i~~~~le~~~~~----~~Ipl~------L~~Iie~c~~h~~~k------------   57 (134)
                      ..|+|+|+||+.|.|++.+|++  ++++| +++.+..    .+||+|      |++|++||+||+.+.            
T Consensus         2 ~~v~L~S~Dg~~f~v~~~~a~~S~~i~~~-l~~~~~~~~~~~~Ipl~~v~~~~L~~Vi~yc~~h~~~~~~~~~~~~~~~w   80 (104)
T smart00512        2 KYIKLISSDGEVFEVEREVARQSKTIKAM-IEDLGVDDENNNPIPLPNVTSKILSKVIEYCEHHVDDPPSVADKDDIPTW   80 (104)
T ss_pred             CeEEEEeCCCCEEEecHHHHHHHHHHHHH-HHccCcccCCCCCccCCCcCHHHHHHHHHHHHHcccCCCCccccccccHH
Confidence            4699999999999999999999  99999 9876532    489988      999999999998651            


Q ss_pred             ccccccCCChHHHHHHHHhhccccc
Q 046604           58 ENEFGKGKSNDELKEMLLVADYLTI   82 (134)
Q Consensus        58 D~~F~~~~~~~~l~~Li~AA~yL~I   82 (134)
                      |.+|++. +++.|++|+.||+||+|
T Consensus        81 D~~F~~~-d~~~l~dLl~AAnyL~I  104 (104)
T smart00512       81 DAEFLKI-DQETLFELILAANYLDI  104 (104)
T ss_pred             HHHHHcC-CHHHHHHHHHHHHhhCC
Confidence            7899995 99999999999999997

Family of Skp1 (kinetochore protein required for cell cycle progression) and elongin C (subunit of RNA polymerase II transcription factor SIII) homologues.

>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []

Probab=99.60  E-value=6.2e-16  Score=96.79  Aligned_cols=51  Identities=22%  Similarity=0.306  Sum_probs=46.5

Q ss_pred             ceEEEeCCCCEEEecHHHHHH--HHhhccCCCCCCCC-ceecc------hHHHHHHHHhcC
Q 046604            3 ENIFEDGGQQLFKVEEQGCSR--LCSHSSTSDGTSED-MVVLQ------LPYIIKFCKAHG   54 (134)
Q Consensus         3 ~i~l~S~DG~~f~V~~~~~~~--~i~~~~le~~~~~~-~Ipl~------L~~Iie~c~~h~   54 (134)
                      .|+|+|+||+.|.|++++|++  ++++| +++.+... +||+|      |++|++||+||+
T Consensus         2 ~v~L~SsDg~~f~V~~~~a~~S~~i~~m-l~~~~~~~~~Ipl~~v~~~~L~kViewc~~H~   61 (62)
T PF03931_consen    2 YVKLVSSDGQEFEVSREAAKQSKTIKNM-LEDLGDEDEPIPLPNVSSRILKKVIEWCEHHK   61 (62)
T ss_dssp             EEEEEETTSEEEEEEHHHHTTSHHHHHH-HHCTCCCGTEEEETTS-HHHHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCEEEeeHHHHHHhHHHHHH-HhhhcccccccccCccCHHHHHHHHHHHHhcC
Confidence            589999999999999999999  99999 98876553 59998      999999999996

It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a POZ domain with a core structure consisting of beta(2)/alpha(2)/beta(2)/alpha(2) in two layers, alpha/beta. This domain is found at the N-terminal of SKP1 proteins [] as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. ; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 1LM8_C 2XAI_E 1VCB_E 3ZRC_K 3ZRF_E 3DCG_B 2C9W_C 1LQB_B 2IZV_C 1HV2_A ....

>KOG3473 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin C [Transcription]

Probab=99.14  E-value=1.4e-10  Score=78.23  Aligned_cols=78  Identities=14%  Similarity=0.124  Sum_probs=62.1

Q ss_pred             CceEEEeCCCCEEEecHHHHHH--HHhhccCCCCC-----CCCceecc------hHHHHHHHHhcCCCc-----cccccc
Q 046604            2 EENIFEDGGQQLFKVEEQGCSR--LCSHSSTSDGT-----SEDMVVLQ------LPYIIKFCKAHGVSK-----ENEFGK   63 (134)
Q Consensus         2 ~~i~l~S~DG~~f~V~~~~~~~--~i~~~~le~~~-----~~~~Ipl~------L~~Iie~c~~h~~~k-----D~~F~~   63 (134)
                      +.|+|+|+||..|.+.+++|+.  +||.| +.+.+     ..+.+-++      |+||.+|+.+....+     -.+| +
T Consensus        17 ~yVkLvS~Ddhefiikre~AmtSgTiram-l~gpg~~se~~~n~v~f~di~shiLeKvc~Yl~Yk~rY~~~s~eiPeF-~   94 (112)
T KOG3473|consen   17 MYVKLVSSDDHEFIIKREHAMTSGTIRAM-LSGPGVFSEAEKNEVYFRDIPSHILEKVCEYLAYKVRYTNSSTEIPEF-D   94 (112)
T ss_pred             hheEeecCCCcEEEEeehhhhhhhHHHHH-HcCCccccccccceEEeccchHHHHHHHHHHhhheeeeccccccCCCC-C
Confidence            5699999999999999999999  99999 88643     12444443      999999998744332     3465 5


Q ss_pred             CCChHHHHHHHHhhccccc
Q 046604           64 GKSNDELKEMLLVADYLTI   82 (134)
Q Consensus        64 ~~~~~~l~~Li~AA~yL~I   82 (134)
                      . ..++.++|+.||+||++
T Consensus        95 I-ppemaleLL~aAn~Lec  112 (112)
T KOG3473|consen   95 I-PPEMALELLMAANYLEC  112 (112)
T ss_pred             C-CHHHHHHHHHHhhhhcC
Confidence            5 89999999999999974

>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins

Probab=97.69  E-value=0.00032  Score=46.82  Aligned_cols=85  Identities=15%  Similarity=0.172  Sum_probs=65.5

Q ss_pred             ceEEEeCCCCEEEecHHHHHH---HHhhccCCCCC-CC---Cceecc------hHHHHHHHHhcCCCcccccccCCChHH
Q 046604            3 ENIFEDGGQQLFKVEEQGCSR---LCSHSSTSDGT-SE---DMVVLQ------LPYIIKFCKAHGVSKENEFGKGKSNDE   69 (134)
Q Consensus         3 ~i~l~S~DG~~f~V~~~~~~~---~i~~~~le~~~-~~---~~Ipl~------L~~Iie~c~~h~~~kD~~F~~~~~~~~   69 (134)
                      .++|+..||+.|.|.+.+...   .++++ +...+ .+   ..|+++      +..+++||....       +..-+.+.
T Consensus        12 D~~i~v~d~~~~~vhk~iL~~~S~~F~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~Y~~~-------~~~~~~~~   83 (111)
T PF00651_consen   12 DVTIRVGDGKTFYVHKNILAARSPYFRNL-FEGSKFKESTVPEISLPDVSPEAFEAFLEYMYTGE-------IEINSDEN   83 (111)
T ss_dssp             -EEEEETTTEEEEE-HHHHHHHBHHHHHH-HTTTTSTTSSEEEEEETTSCHHHHHHHHHHHHHSE-------EEEE-TTT
T ss_pred             CEEEEECCCEEEeechhhhhccchhhhhc-ccccccccccccccccccccccccccccccccCCc-------ccCCHHHH
Confidence            478999999999999999977   99999 88763 22   246655      999999995422       11203677


Q ss_pred             HHHHHHhhccccchhHHHHHHHHHHH
Q 046604           70 LKEMLLVADYLTIKDTLDYLAETLAN   95 (134)
Q Consensus        70 l~~Li~AA~yL~I~~Ll~l~~~~iA~   95 (134)
                      +.+++.+|++++++.|.+.|+..+..
T Consensus        84 ~~~ll~lA~~~~~~~L~~~~~~~l~~  109 (111)
T PF00651_consen   84 VEELLELADKLQIPELKKACEKFLQE  109 (111)
T ss_dssp             HHHHHHHHHHTTBHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCcHHHHHHHHHHHHh
Confidence            99999999999999999999998854

The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....

>PHA02713 hypothetical protein; Provisional

Probab=97.40  E-value=0.0016  Score=56.17  Aligned_cols=93  Identities=17%  Similarity=0.179  Sum_probs=72.8

Q ss_pred             ceEEEeCCCCEEEecHHHHHH---HHhhccCCCCC----CCCceecc------hHHHHHHHHhcCCCcccccccCCChHH
Q 046604            3 ENIFEDGGQQLFKVEEQGCSR---LCSHSSTSDGT----SEDMVVLQ------LPYIIKFCKAHGVSKENEFGKGKSNDE   69 (134)
Q Consensus         3 ~i~l~S~DG~~f~V~~~~~~~---~i~~~~le~~~----~~~~Ipl~------L~~Iie~c~~h~~~kD~~F~~~~~~~~   69 (134)
                      .|+|...+|+.|.+-+.+...   .++.| +..+-    ....|.|.      |+.|++|+....          ++.+.
T Consensus        27 DV~L~v~~~~~f~~Hr~vLaa~S~YF~am-F~~~~~e~~~~~~v~l~~v~~~~~~~ll~y~Yt~~----------i~~~n   95 (557)
T PHA02713         27 DVIITIGDGEEIKAHKTILAAGSKYFRTL-FTTPMIIRDLVTRVNLQMFDKDAVKNIVQYLYNRH----------ISSMN   95 (557)
T ss_pred             CEEEEeCCCCEEeehHHHHhhcCHHHHHH-hcCCchhhccCceEEeccCCHHHHHHHHHHhcCCC----------CCHHH
Confidence            478888779999999988876   88888 76531    12446554      999999998731          26678


Q ss_pred             HHHHHHhhccccchhHHHHHHHHHHHHhcCCCHHHHH
Q 046604           70 LKEMLLVADYLTIKDTLDYLAETLANRIKNKSVEYIR  106 (134)
Q Consensus        70 l~~Li~AA~yL~I~~Ll~l~~~~iA~~i~gks~eeir  106 (134)
                      +.+|+.||++|+|+.|.+.||.++...+.-.+-=+|+
T Consensus        96 v~~ll~aA~~lqi~~l~~~C~~~l~~~l~~~NCl~i~  132 (557)
T PHA02713         96 VIDVLKCADYLLIDDLVTDCESYIKDYTNHDTCIYMY  132 (557)
T ss_pred             HHHHHHHHHHHCHHHHHHHHHHHHHhhCCccchHHHH
Confidence            9999999999999999999999998877655544444

>PHA03098 kelch-like protein; Provisional

Probab=97.36  E-value=0.0012  Score=55.86  Aligned_cols=89  Identities=17%  Similarity=0.219  Sum_probs=69.2

Q ss_pred             eEEE-eCCCCEEEecHHHHHH---HHhhccCCCCCCCCceecc-----hHHHHHHHHhcCCCcccccccCCChHHHHHHH
Q 046604            4 NIFE-DGGQQLFKVEEQGCSR---LCSHSSTSDGTSEDMVVLQ-----LPYIIKFCKAHGVSKENEFGKGKSNDELKEML   74 (134)
Q Consensus         4 i~l~-S~DG~~f~V~~~~~~~---~i~~~~le~~~~~~~Ipl~-----L~~Iie~c~~h~~~kD~~F~~~~~~~~l~~Li   74 (134)
                      ++|. +.+|+.|.+.+.++..   .++.| +..+-.+..|.++     ++.|++|+..-+       +.. +.+.+.+|+
T Consensus        12 v~l~~~~~~~~~~~Hk~vLaa~S~yF~~m-f~~~~~~~~i~l~~~~~~~~~~l~y~Ytg~-------~~i-~~~~~~~ll   82 (534)
T PHA03098         12 ESIIIVNGGGIIKVHKIILSSSSEYFKKM-FKNNFKENEINLNIDYDSFNEVIKYIYTGK-------INI-TSNNVKDIL   82 (534)
T ss_pred             EEEEEEcCCEEEEeHHHHHHhhhHHHHHH-HhCCCCCceEEecCCHHHHHHHHHHhcCCc-------eEE-cHHHHHHHH
Confidence            4555 4689999999998776   88998 8764323445554     999999987743       333 677799999


Q ss_pred             HhhccccchhHHHHHHHHHHHHhcCCC
Q 046604           75 LVADYLTIKDTLDYLAETLANRIKNKS  101 (134)
Q Consensus        75 ~AA~yL~I~~Ll~l~~~~iA~~i~gks  101 (134)
                      .||++|+++.|.+.|++++...+.-.+
T Consensus        83 ~~A~~l~~~~l~~~C~~~l~~~l~~~n  109 (534)
T PHA03098         83 SIANYLIIDFLINLCINYIIKIIDDNN  109 (534)
T ss_pred             HHHHHhCcHHHHHHHHHHHHHhCCHhH
Confidence            999999999999999999987765443

>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac

Probab=97.35  E-value=0.00055  Score=42.96  Aligned_cols=77  Identities=17%  Similarity=0.204  Sum_probs=58.6

Q ss_pred             eEEEeCCCCEEEecHHHHHH---HHhhccCCCCC---CCCceecc------hHHHHHHHHhcCCCcccccccCCChHHHH
Q 046604            4 NIFEDGGQQLFKVEEQGCSR---LCSHSSTSDGT---SEDMVVLQ------LPYIIKFCKAHGVSKENEFGKGKSNDELK   71 (134)
Q Consensus         4 i~l~S~DG~~f~V~~~~~~~---~i~~~~le~~~---~~~~Ipl~------L~~Iie~c~~h~~~kD~~F~~~~~~~~l~   71 (134)
                      +++ ..+|+.|.+.+..+..   .++.| +....   ....|+++      ++.+++|+....       +.. +...+.
T Consensus         2 v~i-~v~~~~~~~h~~iL~~~s~~f~~~-~~~~~~~~~~~~i~l~~~~~~~f~~~l~~ly~~~-------~~~-~~~~~~   71 (90)
T smart00225        2 VTL-VVGGKKFKAHKAVLAACSPYFKAL-FSGDFKESKKSEIYLDDVSPEDFRALLEFLYTGK-------LDL-PEENVE   71 (90)
T ss_pred             eEE-EECCEEEehHHHHHhhcCHHHHHH-HcCCCccCCCCEEEecCCCHHHHHHHHHeecCce-------eec-CHHHHH
Confidence            344 5577999999988887   88888 87653   23456665      999999988643       223 455889


Q ss_pred             HHHHhhccccchhHHHHHH
Q 046604           72 EMLLVADYLTIKDTLDYLA   90 (134)
Q Consensus        72 ~Li~AA~yL~I~~Ll~l~~   90 (134)
                      +++.+|+++++++|.+.|+
T Consensus        72 ~l~~~a~~~~~~~l~~~c~   90 (90)
T smart00225       72 ELLELADYLQIPGLVELCE   90 (90)
T ss_pred             HHHHHHHHHCcHHHHhhhC
Confidence            9999999999999998874

Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures.

>PHA02790 Kelch-like protein; Provisional

Probab=96.16  E-value=0.019  Score=48.56  Aligned_cols=85  Identities=7%  Similarity=-0.010  Sum_probs=61.9

Q ss_pred             EEEeCCCCEEEecHHHHHH---HHhhccCCCCCC--CC--ce---ecc---hHHHHHHHHhcCCCcccccccCCChHHHH
Q 046604            5 IFEDGGQQLFKVEEQGCSR---LCSHSSTSDGTS--ED--MV---VLQ---LPYIIKFCKAHGVSKENEFGKGKSNDELK   71 (134)
Q Consensus         5 ~l~S~DG~~f~V~~~~~~~---~i~~~~le~~~~--~~--~I---pl~---L~~Iie~c~~h~~~kD~~F~~~~~~~~l~   71 (134)
                      .+..--|+.|.+-+.+...   .++.| +..+-.  ..  .+   .++   |+.|++|+..-+       +.. +.+.+.
T Consensus        24 ~~~~~~~~~~~~HR~VLAa~S~YFraM-F~~~~~Es~~~v~~~~~~v~~~~l~~lldy~YTg~-------l~i-t~~nV~   94 (480)
T PHA02790         24 TIIEAIGGNIIVNSTILKKLSPYFRTH-LRQKYTKNKDPVTRVCLDLDIHSLTSIVIYSYTGK-------VYI-DSHNVV   94 (480)
T ss_pred             eEEEEcCcEEeeehhhhhhcCHHHHHH-hcCCccccccceEEEecCcCHHHHHHHHHhheeee-------EEE-ecccHH
Confidence            3445568899998887655   88888 754311  11  12   233   999999985533       344 667799


Q ss_pred             HHHHhhccccchhHHHHHHHHHHHHhc
Q 046604           72 EMLLVADYLTIKDTLDYLAETLANRIK   98 (134)
Q Consensus        72 ~Li~AA~yL~I~~Ll~l~~~~iA~~i~   98 (134)
                      +|+.||++|+|+.+.+.||+++...+.
T Consensus        95 ~ll~aA~~Lqi~~v~~~C~~fL~~~l~  121 (480)
T PHA02790         95 NLLRASILTSVEFIIYTCINFILRDFR  121 (480)
T ss_pred             HHHHHHHHhChHHHHHHHHHHHHhhCC
Confidence            999999999999999999998876654

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=95.27  E-value=0.067  Score=46.51  Aligned_cols=84  Identities=18%  Similarity=0.237  Sum_probs=61.6

Q ss_pred             eEEEeCCCCEEEecHHHHHH---HHhhccCCCCC---CCCceecc------hHHHHHHHHhcCCCcccccccCCChHHHH
Q 046604            4 NIFEDGGQQLFKVEEQGCSR---LCSHSSTSDGT---SEDMVVLQ------LPYIIKFCKAHGVSKENEFGKGKSNDELK   71 (134)
Q Consensus         4 i~l~S~DG~~f~V~~~~~~~---~i~~~~le~~~---~~~~Ipl~------L~~Iie~c~~h~~~kD~~F~~~~~~~~l~   71 (134)
                      +.|.-.+ +.|..-+.+...   .++.| +..+-   ....|.+.      |..+++|+...+       +.. +.+.+-
T Consensus        39 v~L~v~~-~~~~aHR~VLAa~S~YFraM-Ft~~l~e~~~~~i~l~~v~~~~l~~ll~y~Yt~~-------i~i-~~~nVq  108 (571)
T KOG4441|consen   39 VTLLVGD-REFPAHRVVLAACSPYFRAM-FTSGLKESKQKEINLEGVDPETLELLLDYAYTGK-------LEI-SEDNVQ  108 (571)
T ss_pred             EEEEECC-eeechHHHHHHhccHHHHHH-hcCCcccccceEEEEecCCHHHHHHHHHHhhcce-------EEe-chHhHH
Confidence            3444444 777777666655   88888 76431   12445543      999999988755       455 788899


Q ss_pred             HHHHhhccccchhHHHHHHHHHHHHh
Q 046604           72 EMLLVADYLTIKDTLDYLAETLANRI   97 (134)
Q Consensus        72 ~Li~AA~yL~I~~Ll~l~~~~iA~~i   97 (134)
                      +|+.||++|+|+++.+.||..+...+
T Consensus       109 ~ll~aA~~lQi~~v~~~C~~fL~~~l  134 (571)
T KOG4441|consen  109 ELLEAASLLQIPEVVDACCEFLESQL  134 (571)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence            99999999999999999998776543

>KOG2716 consensus Polymerase delta-interacting protein PDIP1 and related proteins, contain BTB/POZ domain [Inorganic ion transport and metabolism]

Probab=94.86  E-value=0.17  Score=39.37  Aligned_cols=85  Identities=16%  Similarity=0.271  Sum_probs=66.0

Q ss_pred             CCCCEEEecHHHHHH---HHhhccCCCCC-----CCCceecc-----hHHHHHHHHhcCCCcccccccCCChHHHHHHHH
Q 046604            9 GGQQLFKVEEQGCSR---LCSHSSTSDGT-----SEDMVVLQ-----LPYIIKFCKAHGVSKENEFGKGKSNDELKEMLL   75 (134)
Q Consensus         9 ~DG~~f~V~~~~~~~---~i~~~~le~~~-----~~~~Ipl~-----L~~Iie~c~~h~~~kD~~F~~~~~~~~l~~Li~   75 (134)
                      -.|..|.-+......   .++.| ++..-     ..+.|=+.     +..|+.|++.-.     -.+.. +...|-+|+.
T Consensus        11 vGG~~F~Tsk~TLtk~dg~fk~m-~e~~i~~~~d~s~~IFIDRSpKHF~~ILNfmRdGd-----v~LPe-~~kel~El~~   83 (230)
T KOG2716|consen   11 VGGTIFKTSKSTLTKFDGFFKTM-LETDIPVEKDESGCIFIDRSPKHFDTILNFMRDGD-----VDLPE-SEKELKELLR   83 (230)
T ss_pred             cCCeEEEeehhhhhhhhhHHHHH-hhcCCccccCCcCcEEecCChhHHHHHHHhhhccc-----ccCcc-chHHHHHHHH
Confidence            358889888888877   88888 87541     11345333     999999998422     11666 7889999999


Q ss_pred             hhccccchhHHHHHHHHHHHHhcCC
Q 046604           76 VADYLTIKDTLDYLAETLANRIKNK  100 (134)
Q Consensus        76 AA~yL~I~~Ll~l~~~~iA~~i~gk  100 (134)
                      -|.|..+++|.++|..+++..+.+.
T Consensus        84 EA~fYlL~~Lv~~C~~~i~~~~~~~  108 (230)
T KOG2716|consen   84 EAEFYLLDGLVELCQSAIARLIRGY  108 (230)
T ss_pred             HHHHhhHHHHHHHHHHHhhhcccCc
Confidence            9999999999999999999997764

>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=93.36  E-value=0.085  Score=39.70  Aligned_cols=38  Identities=32%  Similarity=0.370  Sum_probs=29.4

Q ss_pred             HHhhccc--cchhHHHHHHHHHHHHhcCCCHHHHHHHhCCCCCCC
Q 046604           74 LLVADYL--TIKDTLDYLAETLANRIKNKSVEYIRKFFGIENNFM  116 (134)
Q Consensus        74 i~AA~yL--~I~~Ll~l~~~~iA~~i~gks~eeir~~f~i~~d~t  116 (134)
                      ..|||.-  +|--|.+++|+..     |.-+.+||+.||||+||.
T Consensus       161 ~eaanrwtDnI~il~dy~~rkf-----~~e~nqi~~~fgIPed~d  200 (203)
T KOG3433|consen  161 AEAANRWTDNIFILIDYLYRKF-----GLEPNQIRKEFGIPEDFD  200 (203)
T ss_pred             HHHHhhhhhhHHHHHHHHHHhc-----CCCHHHHhHhcCCCcccc
Confidence            3444432  6777888888664     899999999999999974

>COG5124 Protein predicted to be involved in meiotic recombination [Cell division and chromosome partitioning / General function prediction only]

Probab=93.16  E-value=0.089  Score=39.50  Aligned_cols=31  Identities=35%  Similarity=0.494  Sum_probs=24.4

Q ss_pred             cchhHHHHHHHHHHHHhcCCCHHHHHHHhCCCCCCC
Q 046604           81 TIKDTLDYLAETLANRIKNKSVEYIRKFFGIENNFM  116 (134)
Q Consensus        81 ~I~~Ll~l~~~~iA~~i~gks~eeir~~f~i~~d~t  116 (134)
                      +|.-|.++.|+..     +..|+|||+.||||+|+.
T Consensus       174 nI~ilidy~c~kf-----~~~~~qir~~fgIPedld  204 (209)
T COG5124         174 NIEILIDYLCKKF-----FLKPEQIRKEFGIPEDLD  204 (209)
T ss_pred             hHHHHHHHHHHHc-----CCCHHHHHHhcCCCcchh
Confidence            4566677666543     788999999999999874

>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast)

Probab=83.44  E-value=1.4  Score=33.05  Aligned_cols=42  Identities=31%  Similarity=0.309  Sum_probs=29.8

Q ss_pred             HHHHHHhhccc--cchhHHHHHHHHHHHHhcCCCHHHHHHHhCCCCCCC
Q 046604           70 LKEMLLVADYL--TIKDTLDYLAETLANRIKNKSVEYIRKFFGIENNFM  116 (134)
Q Consensus        70 l~~Li~AA~yL--~I~~Ll~l~~~~iA~~i~gks~eeir~~f~i~~d~t  116 (134)
                      +.....||+.-  ||-.|..++++.     .|.+.+++|+.||||+||.
T Consensus       144 ~~~~~~~anrwTDNI~~l~~~~~~k-----~~~~~~~i~k~f~Ip~d~d  187 (188)
T PF03962_consen  144 IKIAKEAANRWTDNIFSLKSYLKKK-----FGMDEEDIRKEFGIPEDFD  187 (188)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHh-----cCCCHHHHHHHcCCccccC
Confidence            34444566654  566666666653     4999999999999999974

The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].

>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised

Probab=80.76  E-value=1.6  Score=35.52  Aligned_cols=82  Identities=6%  Similarity=0.071  Sum_probs=51.5

Q ss_pred             CEEEecHHHHHH---HHhhccCCC---CCC-CCceecc---hHHHHHHHHhcCCCcccccccCCChHHHHHHHHhhcccc
Q 046604           12 QLFKVEEQGCSR---LCSHSSTSD---GTS-EDMVVLQ---LPYIIKFCKAHGVSKENEFGKGKSNDELKEMLLVADYLT   81 (134)
Q Consensus        12 ~~f~V~~~~~~~---~i~~~~le~---~~~-~~~Ipl~---L~~Iie~c~~h~~~kD~~F~~~~~~~~l~~Li~AA~yL~   81 (134)
                      +.|..+......   .+++. +..   .+. .++|++.   =-.|++|+=.|-..+...    ++.+.+..++.-|+||+
T Consensus        14 rdF~C~~~lL~~~M~YF~~~-l~~~~~~~~~~~~idisVhCDv~iF~WLm~yv~~~~p~----l~~~NvvsIliSS~FL~   88 (317)
T PF11822_consen   14 RDFTCPRDLLVSEMRYFAEY-LSRYINDSQRWEEIDISVHCDVHIFEWLMRYVKGEPPS----LTPSNVVSILISSEFLQ   88 (317)
T ss_pred             eeeeccHHHHHHhhHHHHHH-HhhcccccCcCCCcceEEecChhHHHHHHHHhhcCCCc----CCcCcEEEeEehhhhhc
Confidence            467777777755   67776 632   111 2444444   122555554443322222    26777889999999999


Q ss_pred             chhHHHHHHHHHHHHhc
Q 046604           82 IKDTLDYLAETLANRIK   98 (134)
Q Consensus        82 I~~Ll~l~~~~iA~~i~   98 (134)
                      |++|++.|-.++...+.
T Consensus        89 M~~Lve~cl~y~~~~~~  105 (317)
T PF11822_consen   89 MESLVEECLQYCHDHMS  105 (317)
T ss_pred             cHHHHHHHHHHHHHhHH
Confidence            99999999888755443

This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	134
1fqv_B	149	Insights Into Scf Ubiquitin Ligases From The Struct		7e-09
3l2o_A	149	Structure-Based Mechanism Of Dimerization-Dependent		7e-09
2p1m_A	160	Tir1-ask1 Complex Structure Length = 160		1e-08
2ast_A	159	Crystal Structure Of The Skp1-Skp2-Cks1 Complex Len		2e-08
2e31_B	166	Structural Basis For Selection Of Glycosylated Subs		2e-08
1p22_B	145	Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex		2e-08
1nex_A	169	Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp		6e-08
3mks_A	169	Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH		7e-08
1fs1_B	141	Insights Into Scf Ubiquitin Ligases From The Struct		3e-06
1ldk_D	133	Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiqu		4e-04

>pdb|1FQV|B Chain B, Insights Into Scf Ubiquitin Ligases From The Structure Of The Skp1-Skp2 Complex Length = 149

Iteration: 1
 Score = 55.8 bits (133), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 36/97 (37%), Positives = 51/97 (52%), Gaps = 16/97 (16%)
Query: 43  LPYIIKFCKAHGVSKENEFGKGKSN-------------DELKEMLLVADYLTIKDTLDYL 89
           L  +I++C  H   K++  G G  +               L E++L A+YL IK  LD  
Sbjct: 49  LKKVIQWCTHH---KDDPGGSGTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVT 105
Query: 90  AETLANRIKNKSVEYIRKFFGIENNFMPEEKEATRKE 126
            +T+AN IK K+ E IRK F I+N+F  EE+   RKE
Sbjct: 106 CKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKE 142

>pdb|3L2O|A Chain A, Structure-Based Mechanism Of Dimerization-Dependent Ubiquitination By The Scffbx4 Ubiquitin Ligase Length = 149

Iteration: 1
 Score = 55.8 bits (133), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 36/97 (37%), Positives = 51/97 (52%), Gaps = 16/97 (16%)
Query: 43  LPYIIKFCKAHGVSKENEFGKGKSN-------------DELKEMLLVADYLTIKDTLDYL 89
           L  +I++C  H   K++  G G  +               L E++L A+YL IK  LD  
Sbjct: 49  LKKVIQWCTHH---KDDPGGSGTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVT 105
Query: 90  AETLANRIKNKSVEYIRKFFGIENNFMPEEKEATRKE 126
            +T+AN IK K+ E IRK F I+N+F  EE+   RKE
Sbjct: 106 CKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKE 142

>pdb|2P1M|A Chain A, Tir1-ask1 Complex Structure Length = 160

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 34/94 (36%), Positives = 49/94 (52%), Gaps = 19/94 (20%)
Query: 43  LPYIIKFCKAH---GVSKENEF-GKGKSNDELK---------------EMLLVADYLTIK 83
           L  +I++CK H     SK     G   S+D+LK               E++L A+YL IK
Sbjct: 52  LAKVIEYCKRHVEAAASKAEAVEGAATSDDDLKAWDADFMKIDQATLFELILAANYLNIK 111
Query: 84  DTLDYLAETLANRIKNKSVEYIRKFFGIENNFMP 117
           + LD   +T+A+ IK K+ E IR  F I+N+F P
Sbjct: 112 NLLDLTCQTVADMIKGKTPEEIRTTFNIKNDFTP 145

>pdb|2E31|B Chain B, Structural Basis For Selection Of Glycosylated Substrate By Scffbs1 Ubiquitin Ligase Length = 166

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 29/57 (50%), Positives = 38/57 (66%)
Query: 70  LKEMLLVADYLTIKDTLDYLAETLANRIKNKSVEYIRKFFGIENNFMPEEKEATRKE 126
           L E++L A+YL IK  LD   +T+AN IK K+ E IRK F I+N+F  EE+   RKE
Sbjct: 103 LFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKE 159

>pdb|1P22|B Chain B, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 145

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 29/57 (50%), Positives = 38/57 (66%)
Query: 70  LKEMLLVADYLTIKDTLDYLAETLANRIKNKSVEYIRKFFGIENNFMPEEKEATRKE 126
           L E++L A+YL IK  LD   +T+AN IK K+ E IRK F I+N+F  EE+   RKE
Sbjct: 82  LFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKE 138

>pdb|1NEX|A Chain A, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 169

Iteration: 1
 Score = 52.8 bits (125), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 27/60 (45%), Positives = 38/60 (63%)
Query: 70  LKEMLLVADYLTIKDTLDYLAETLANRIKNKSVEYIRKFFGIENNFMPEEKEATRKEYEL 129
           L E++L A+YL IK  LD   + +A  I+ +S E IR+ F I N+F PEE+ A R+E E 
Sbjct: 106 LYEIILAANYLNIKPLLDAGCKVVAEXIRGRSPEEIRRTFNIVNDFTPEEEAAIRRENEW 165

>pdb|3MKS|A Chain A, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 169

Iteration: 1
 Score = 52.4 bits (124), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 27/60 (45%), Positives = 38/60 (63%)
Query: 70  LKEMLLVADYLTIKDTLDYLAETLANRIKNKSVEYIRKFFGIENNFMPEEKEATRKEYEL 129
           L E++L A+YL IK  LD   + +A  I+ +S E IR+ F I N+F PEE+ A R+E E 
Sbjct: 106 LYEIILAANYLNIKPLLDAGCKVVAEMIRGRSPEEIRRTFNIVNDFTPEEEAAIRRENEW 165

>pdb|1FS1|B Chain B, Insights Into Scf Ubiquitin Ligases From The Structure Of The Skp1-Skp2 Complex Length = 141

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 24/46 (52%), Positives = 32/46 (69%)
Query: 70  LKEMLLVADYLTIKDTLDYLAETLANRIKNKSVEYIRKFFGIENNF 115
           L E++L A+YL IK  LD   +T+AN IK K+ E IRK F I+N+F
Sbjct: 94  LFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDF 139

>pdb|1LDK|D Chain D, Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiquitin Ligase Complex Length = 133

Iteration: 1
 Score = 40.0 bits (92), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 21/40 (52%), Positives = 27/40 (67%)
Query: 70  LKEMLLVADYLTIKDTLDYLAETLANRIKNKSVEYIRKFF 109
           L E++L A+YL IK  LD   +T+AN IK K+ E IRK F
Sbjct: 93  LFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTF 132

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	134
3v7d_A	169	Suppressor of kinetochore protein 1; WD 40 domain,	6e-13
2ast_A	159	S-phase kinase-associated protein 1A; SCF-substrat	3e-12
2p1m_A	160	SKP1-like protein 1A; F-BOX, leucine rich repeat,	4e-11
1fs1_B	141	SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, le	9e-11

>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A* Length = 169

 Score = 61.4 bits (148), Expect = 6e-13
 Identities = 32/108 (29%), Positives = 48/108 (44%), Gaps = 8/108 (7%)

Query: 21  CSRLCSHSSTSDGTSEDMVVLQLPYIIKFCKAHGVSKENEFGKGKSNDELKEMLLVADYL 80
                 H   S+   ED    +    +       +  + E         L E++L A+YL
Sbjct: 65  VIEWAEHHRDSNFPDEDDDDSRKSAPVDSWDREFLKVDQE--------MLYEIILAANYL 116

Query: 81  TIKDTLDYLAETLANRIKNKSVEYIRKFFGIENNFMPEEKEATRKEYE 128
            IK  LD   + +A  I+ +S E IR+ F I N+F PEE+ A R+E E
Sbjct: 117 NIKPLLDAGCKVVAEMIRGRSPEEIRRTFNIVNDFTPEEEAAIRRENE 164

>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A* Length = 160

 Score = 56.4 bits (135), Expect = 4e-11
 Identities = 28/62 (45%), Positives = 41/62 (66%)

Query: 67  NDELKEMLLVADYLTIKDTLDYLAETLANRIKNKSVEYIRKFFGIENNFMPEEKEATRKE 126
              L E++L A+YL IK+ LD   +T+A+ IK K+ E IR  F I+N+F PEE+E  R+E
Sbjct: 95  QATLFELILAANYLNIKNLLDLTCQTVADMIKGKTPEEIRTTFNIKNDFTPEEEEEVRRE 154

Query: 127 YE 128
            +
Sbjct: 155 NQ 156

>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D Length = 141

 Score = 55.1 bits (132), Expect = 9e-11
 Identities = 30/92 (32%), Positives = 45/92 (48%), Gaps = 18/92 (19%)

Query: 42  QLPYIIKFCKAHGV---SKENEFGKGKSNDELKE---------------MLLVADYLTIK 83
            L  +I++C  H       E++  K K  D++                 ++L A+YL IK
Sbjct: 48  ILKKVIQWCTHHKDDPPPPEDDENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIK 107

Query: 84  DTLDYLAETLANRIKNKSVEYIRKFFGIENNF 115
             LD   +T+AN IK K+ E IRK F I+N+F
Sbjct: 108 GLLDVTCKTVANMIKGKTPEEIRKTFNIKNDF 139

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	134
3v7d_A	169	Suppressor of kinetochore protein 1; WD 40 domain,	100.0
2p1m_A	160	SKP1-like protein 1A; F-BOX, leucine rich repeat,	100.0
2ast_A	159	S-phase kinase-associated protein 1A; SCF-substrat	100.0
1fs1_B	141	SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, le	100.0
1hv2_A	99	Elongin C, ELC1; protein-peptide complex, signalin	99.85
1vcb_B	112	Protein (elongin C); tumor suppressor, cancer, ubi	99.85
2fnj_C	96	Transcription elongation factor B polypeptide 1; b	99.84
4ajy_C	97	Transcription elongation factor B polypeptide 1; E	99.76
2yy9_A	135	Zinc finger and BTB domain-containing protein 48;	98.42
2vkp_A	109	BTB/POZ domain-containing protein 6; protein-bindi	98.13
1buo_A	121	POZ domain, protein (promyelocytic leukemia zinc f	98.06
3htm_A	172	Speckle-type POZ protein; BTB, SPOP, ubiquitin, li	97.99
3b84_A	119	Zinc finger and BTB domain-containing protein 48;	97.91
2if5_A	120	Zinc finger and BTB domain-containing protein 7A;	97.84
2vpk_A	116	Myoneurin; transcription regulation, transcription	97.83
1r29_A	127	B-cell lymphoma 6 protein; BTB domain, transcripti	97.81
2q81_A	119	MIZ-1 protein; BTB/POZ domain, transcription; HET:	97.75
4eoz_A	145	Speckle-type POZ protein; E3 ubiquitin ligase, nuc	97.72
2z8h_A	138	Transcription regulator protein BACH1; BTB, POZ, d	97.69
3hve_A	256	Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, dis	97.6
3i3n_A	279	Kelch-like protein 11; structural genomics, BTB, K	97.59
2ppi_A	144	Gigaxonin; BTB domain, protein degradation, struct	97.57
3ga1_A	129	Nucleus accumbens-associated protein 1; BTB/POZ do	97.55
3hqi_A	312	Speckle-type POZ protein; SPOP, ubiquitin, puckere	97.51
3ohu_A	125	Transcription regulator protein BACH2; BTB/POZ dom	97.26
3m5b_A	119	Zinc finger and BTB domain-containing protein 32;	97.23
3fkc_A	116	Transcriptional regulator kaiso; zinc finger and B	97.04
2ihc_A	124	Transcription regulator protein BACH1; BRIC-A-BRAC	96.97
3drz_A	107	BTB/POZ domain-containing protein KCTD5; potassium	83.42

>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A*

Probab=100.00  E-value=1.9e-48  Score=286.86  Aligned_cols=129  Identities=31%  Similarity=0.440  Sum_probs=114.4

Q ss_pred             CceEEEeCCCCEEEecHHHHHH--HHhhccCCCCCC-----C--Cceecc------hHHHHHHHHhcCCC----------
Q 046604            2 EENIFEDGGQQLFKVEEQGCSR--LCSHSSTSDGTS-----E--DMVVLQ------LPYIIKFCKAHGVS----------   56 (134)
Q Consensus         2 ~~i~l~S~DG~~f~V~~~~~~~--~i~~~~le~~~~-----~--~~Ipl~------L~~Iie~c~~h~~~----------   56 (134)
                      ..|+|+|+||+.|.|++.+|++  +|++| +++.+.     +  .+||||      |++|++||+||+.+          
T Consensus         7 ~~i~L~SsDG~~F~V~~~vA~~S~tIk~m-l~~~~~~~~~~~~~~~IplpnV~s~iL~kVieyc~~h~~~~~~~~~~~~~   85 (169)
T 3v7d_A            7 SNVVLVSGEGERFTVDKKIAERSLLLKNY-LNDMGDDDDEDDDEIVMPVPNVRSSVLQKVIEWAEHHRDSNFPDEDDDDS   85 (169)
T ss_dssp             CEEEEECTTCCEEEEEHHHHTTSHHHHHH-HHC-----------CEEECTTCCHHHHHHHHHHHHHTTTCCCCC------
T ss_pred             CeEEEEeCCCCEEEecHHHHHHhHHHHHH-HHhcCcccccccCCCceeeCCCCHHHHHHHHHHHHHcccCCCcccccccc
Confidence            4699999999999999999999  99999 987653     2  689998      99999999999853          


Q ss_pred             ------c--ccccccCCChHHHHHHHHhhccccchhHHHHHHHHHHHHhcCCCHHHHHHHhCCCCCCCHHHHHHHHHhch
Q 046604           57 ------K--ENEFGKGKSNDELKEMLLVADYLTIKDTLDYLAETLANRIKNKSVEYIRKFFGIENNFMPEEKEATRKEYE  128 (134)
Q Consensus        57 ------k--D~~F~~~~~~~~l~~Li~AA~yL~I~~Ll~l~~~~iA~~i~gks~eeir~~f~i~~d~t~eee~~i~~e~~  128 (134)
                            +  |++|+++ +.+.||+|+.|||||+|++|+++||++||++|+||||||||++|||++||||||++++|+||+
T Consensus        86 ~~~~~i~~wD~~Fl~v-d~~~LfeLi~AAnyLdIk~Lldl~c~~vA~~ikgktpeeiR~~f~I~nd~t~eEe~~ir~en~  164 (169)
T 3v7d_A           86 RKSAPVDSWDREFLKV-DQEMLYEIILAANYLNIKPLLDAGCKVVAEMIRGRSPEEIRRTFNIVNDFTPEEEAAIRRENE  164 (169)
T ss_dssp             --CCCCCHHHHHHTCS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCHHHHHHHHTCCCCCCHHHHHHHHTTC-
T ss_pred             cccccccHHHHHHHcC-CHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHcCCCHHHHHHHcCCCCCCCHHHHHHHHHhcc
Confidence                  1  8899997 999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhh
Q 046604          129 LLRL  132 (134)
Q Consensus       129 w~~~  132 (134)
                      |+|.
T Consensus       165 W~~~  168 (169)
T 3v7d_A          165 WAED  168 (169)
T ss_dssp             ----
T ss_pred             cccc
Confidence            9984

>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*

Probab=100.00  E-value=7.7e-47  Score=275.86  Aligned_cols=128  Identities=34%  Similarity=0.515  Sum_probs=79.9

Q ss_pred             CceEEEeCCCCEEEecHHHHHH--HHhhccCCCCCCCCceecc------hHHHHHHHHhcCCC------------c----
Q 046604            2 EENIFEDGGQQLFKVEEQGCSR--LCSHSSTSDGTSEDMVVLQ------LPYIIKFCKAHGVS------------K----   57 (134)
Q Consensus         2 ~~i~l~S~DG~~f~V~~~~~~~--~i~~~~le~~~~~~~Ipl~------L~~Iie~c~~h~~~------------k----   57 (134)
                      ..|+|+|+||+.|.|++.+|.+  +|++| +++.+.+.+||+|      |++|++||+||+.+            +    
T Consensus         4 ~~v~L~SsDg~~f~v~~~vA~~S~~ik~m-l~~~~~~~~Ipl~~V~~~iL~kVieyc~~h~~~~~~~~~~~~~~~~~~~~   82 (160)
T 2p1m_A            4 KKIVLKSSDGESFEVEEAVALESQTIAHM-VEDDCVDNGVPLPNVTSKILAKVIEYCKRHVEAAASKAEAVEGAATSDDD   82 (160)
T ss_dssp             ----CCC---------CHHHHTCTTTC-------------CCTTSCHHHHHHHHHC------------------------
T ss_pred             CEEEEEcCCCCEEEECHHHHHHhHHHHHH-HHccCCCCceeCCcCcHHHHHHHHHHHHHcccCCCcccccccccccccch
Confidence            4699999999999999999999  99999 9987666789998      99999999999842            1    


Q ss_pred             ----ccccccCCChHHHHHHHHhhccccchhHHHHHHHHHHHHhcCCCHHHHHHHhCCCCCCCHHHHHHHHHhchhhh
Q 046604           58 ----ENEFGKGKSNDELKEMLLVADYLTIKDTLDYLAETLANRIKNKSVEYIRKFFGIENNFMPEEKEATRKEYELLR  131 (134)
Q Consensus        58 ----D~~F~~~~~~~~l~~Li~AA~yL~I~~Ll~l~~~~iA~~i~gks~eeir~~f~i~~d~t~eee~~i~~e~~w~~  131 (134)
                          |++|++. +.+.||+|+.|||||+|++|+++||++||++|+||||+|||++|||++||||||+++||+||+|++
T Consensus        83 i~~wD~~Fl~v-d~~~l~eLi~AAnyL~I~~Lldl~c~~vA~~ikgkt~eeir~~f~I~nd~t~eEe~~ir~en~w~~  159 (160)
T 2p1m_A           83 LKAWDADFMKI-DQATLFELILAANYLNIKNLLDLTCQTVADMIKGKTPEEIRTTFNIKNDFTPEEEEEVRRENQWAF  159 (160)
T ss_dssp             -------------------CHHHHHHTTCHHHHHHHHHHHHHTTTTCCHHHHHHHTTCCCCCCHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHcC-CHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCHHHHHHHcCCCCCCCHHHHHHHHHhCcccc
Confidence                8899997 999999999999999999999999999999999999999999999999999999999999999997

>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D

Probab=100.00  E-value=6.5e-40  Score=234.79  Aligned_cols=112  Identities=33%  Similarity=0.450  Sum_probs=98.0

Q ss_pred             ceEEEeCCCCEEEecHHHHHH--HHhhccCCCCCCCCceecc------hHHHHHHHHhcCCC-----------------c
Q 046604            3 ENIFEDGGQQLFKVEEQGCSR--LCSHSSTSDGTSEDMVVLQ------LPYIIKFCKAHGVS-----------------K   57 (134)
Q Consensus         3 ~i~l~S~DG~~f~V~~~~~~~--~i~~~~le~~~~~~~Ipl~------L~~Iie~c~~h~~~-----------------k   57 (134)
                      .|+|+|+||+.|.|++.+|.+  ++++| +++.+ +++||+|      |++|++||+||+.+                 +
T Consensus         3 ~v~L~SsDg~~f~v~~~vA~~S~~ik~m-l~~~~-~~~Ipl~~V~~~iL~kVieyc~~h~~~~~~~~~~~~~~~~~~~i~   80 (141)
T 1fs1_B            3 SIKLQSSDGEIFEVDVEIAKQSVTIKTM-LEDLG-MDPVPLPNVNAAILKKVIQWCTHHKDDPPPPEDDENKEKRTDDIP   80 (141)
T ss_dssp             EEEEECTTSCEEEEEGGGGGTCHHHHHH-HHHTC-CSSEECTTCCHHHHHHHHHHHHHHTTCC-----------------
T ss_pred             eEEEEeCCCCEEEecHHHHHHhHHHHHH-HHhcC-CCceecCCcCHHHHHHHHHHHHHhccCCCccccccccccchhhhh
Confidence            489999999999999999988  99999 98755 6789998      99999999999843                 1


Q ss_pred             --ccccccCCChHHHHHHHHhhccccchhHHHHHHHHHHHHhcCCCHHHHHHHhCCCCCCCH
Q 046604           58 --ENEFGKGKSNDELKEMLLVADYLTIKDTLDYLAETLANRIKNKSVEYIRKFFGIENNFMP  117 (134)
Q Consensus        58 --D~~F~~~~~~~~l~~Li~AA~yL~I~~Ll~l~~~~iA~~i~gks~eeir~~f~i~~d~t~  117 (134)
                        |++|++. +.+.||+|+.|||||+|++|+++||++||++|+||||||||++|||++||||
T Consensus        81 ~wD~~F~~v-d~~~l~eLi~AAnyL~I~~Lldl~c~~vA~~ikgkt~eeiR~~f~I~~d~tp  141 (141)
T 1fs1_B           81 VWDQEFLKV-DQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTE  141 (141)
T ss_dssp             HHHHHHTCS-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCHHHHHHHTC-------
T ss_pred             HHHHHHHhC-CHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCHHHHHHHcCCCCCCCC
Confidence              7899987 9999999999999999999999999999999999999999999999999997

>1hv2_A Elongin C, ELC1; protein-peptide complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.42.1.1

Probab=99.85  E-value=4.4e-22  Score=134.49  Aligned_cols=78  Identities=15%  Similarity=0.173  Sum_probs=67.3

Q ss_pred             CceEEEeCCCCEEEecHHHHHH--HHhhccCCCCCC--CCceecc------hHHHHHHHHhcCCCc--------cccccc
Q 046604            2 EENIFEDGGQQLFKVEEQGCSR--LCSHSSTSDGTS--EDMVVLQ------LPYIIKFCKAHGVSK--------ENEFGK   63 (134)
Q Consensus         2 ~~i~l~S~DG~~f~V~~~~~~~--~i~~~~le~~~~--~~~Ipl~------L~~Iie~c~~h~~~k--------D~~F~~   63 (134)
                      ..|+|+|+||+.|.|++.+|.+  +|++| +++++.  .++||+|      |++|++||+||+.+.        -.+| +
T Consensus         4 ~~v~L~SsDg~~f~V~~~vA~~S~~ik~m-l~~~~e~~~~~Iplp~V~~~iL~kVieyc~~h~~~~~~~~~~~~i~~w-~   81 (99)
T 1hv2_A            4 DFVTLVSKDDKEYEISRSAAMISPTLKAM-IEGPFRESKGRIELKQFDSHILEKAVEYLNYNLKYSGVSEDDDEIPEF-E   81 (99)
T ss_dssp             SEEEEEETTTEEEEEEHHHHTTCHHHHHH-HHSSTTTCTTEEEETTSCHHHHHHHHHHHHHHHHHHHHCSSCSSCCCC-C
T ss_pred             cEEEEEecCCCEEEECHHHHHHhHHHHHH-HhcccccCCCceecCCcCHHHHHHHHHHHHHhcccCCCccccccCCCc-c
Confidence            5799999999999999999999  99999 987432  2689998      999999999998542        1245 5


Q ss_pred             CCChHHHHHHHHhhccccc
Q 046604           64 GKSNDELKEMLLVADYLTI   82 (134)
Q Consensus        64 ~~~~~~l~~Li~AA~yL~I   82 (134)
                      + +++.||+|+.|||||+|
T Consensus        82 v-d~~~lfeLi~AAnyLdI   99 (99)
T 1hv2_A           82 I-PTEMSLELLLAADYLSI   99 (99)
T ss_dssp             C-CHHHHHHHHHHHHHHCC
T ss_pred             C-CHHHHHHHHHHHHHhCc
Confidence            5 99999999999999997

>1vcb_B Protein (elongin C); tumor suppressor, cancer, ubiquitin, beta sandwich, transcription, transcriptional elongation; 2.70A {Homo sapiens} SCOP: d.42.1.1

Probab=99.85  E-value=1.2e-21  Score=135.16  Aligned_cols=78  Identities=14%  Similarity=0.084  Sum_probs=66.6

Q ss_pred             CceEEEeCCCCEEEecHHHHHH--HHhhccCCCCCC-----CCceecc------hHHHHHHHHhcCCCc-----cccccc
Q 046604            2 EENIFEDGGQQLFKVEEQGCSR--LCSHSSTSDGTS-----EDMVVLQ------LPYIIKFCKAHGVSK-----ENEFGK   63 (134)
Q Consensus         2 ~~i~l~S~DG~~f~V~~~~~~~--~i~~~~le~~~~-----~~~Ipl~------L~~Iie~c~~h~~~k-----D~~F~~   63 (134)
                      ..|+|+|+||+.|.|++.+|++  +|++| +++.+.     ..+||||      |+||++||+||+.+.     -.+| +
T Consensus        17 ~~v~L~SsDG~~F~V~~~~A~~S~tIk~m-l~~~~~~~e~~~~~IplpnV~s~iL~kVieyc~~h~~~~~~~~~i~~w-~   94 (112)
T 1vcb_B           17 MYVKLISSDGHEFIVKREHALTSGTIKAM-LSGPGQFAENETNEVNFREIPSHVLSKVCMYFTYKVRYTNSSTEIPEF-P   94 (112)
T ss_dssp             CEEEEECTTSCEEEEEHHHHHTSHHHHHH-SSCC--------CEEECSSCCHHHHHHHHHHHHHHHHHSSCSSCCCCC-C
T ss_pred             CEEEEEcCCCCEEEECHHHHHHhHHHHHH-HHhcCCcccccCCceeCCCCCHHHHHHHHHHHHHhhhccCCcCCCCCc-c
Confidence            4699999999999999999999  99999 997543     1589998      999999999998531     2356 6


Q ss_pred             CCChHHHHHHHHhhccccc
Q 046604           64 GKSNDELKEMLLVADYLTI   82 (134)
Q Consensus        64 ~~~~~~l~~Li~AA~yL~I   82 (134)
                      + +++.||+|+.|||||+|
T Consensus        95 v-d~~~lfeLi~AAnyLdI  112 (112)
T 1vcb_B           95 I-APEIALELLMAANFLDC  112 (112)
T ss_dssp             C-CHHHHHHHHHHHHHHTC
T ss_pred             c-CHHHHHHHHHHHHHhCc
Confidence            5 99999999999999997

>2fnj_C Transcription elongation factor B polypeptide 1; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.42.1.1 PDB: 1lqb_B 1lm8_C 2jz3_C 2xai_B 2c9w_C 2izv_C 3dcg_B 3zrc_B* 3zrf_B

Probab=99.84  E-value=4.9e-22  Score=133.53  Aligned_cols=78  Identities=15%  Similarity=0.100  Sum_probs=66.3

Q ss_pred             CceEEEeCCCCEEEecHHHHHH--HHhhccCCCCCC--C---Cceecc------hHHHHHHHHhcCCCc-----cccccc
Q 046604            2 EENIFEDGGQQLFKVEEQGCSR--LCSHSSTSDGTS--E---DMVVLQ------LPYIIKFCKAHGVSK-----ENEFGK   63 (134)
Q Consensus         2 ~~i~l~S~DG~~f~V~~~~~~~--~i~~~~le~~~~--~---~~Ipl~------L~~Iie~c~~h~~~k-----D~~F~~   63 (134)
                      +.|+|+|+||+.|.|++.+|++  +|++| +++.+.  +   .+||+|      |++|++||+||+.+.     -.+| +
T Consensus         1 ~~v~L~SsDg~~f~V~~~~A~~S~~ik~m-l~~~~~~~e~~~~~Ipl~~V~~~iL~kVieyc~~h~~~~~~~~~i~~w-~   78 (96)
T 2fnj_C            1 MYVKLISSDGHEFIVKREHALTSGTIKAM-LSGPGQFAENETNEVNFREIPSHVLSKVCMYFTYKVRYTNSSTEIPEF-P   78 (96)
T ss_dssp             CEEEEECTTSCEEEEEHHHHTTSHHHHHH-HHCC--------CEEECSSCCHHHHHHHHHHHHHHHHHHSCCSCCCCC-C
T ss_pred             CeEEEEecCCCEEEeCHHHHHHhHHHHHH-HHccCCcccccCCceeCCCCCHHHHHHHHHHHHHccccCCCcccCCCc-c
Confidence            4799999999999999999999  99999 987543  1   589998      999999999998531     2356 6


Q ss_pred             CCChHHHHHHHHhhccccc
Q 046604           64 GKSNDELKEMLLVADYLTI   82 (134)
Q Consensus        64 ~~~~~~l~~Li~AA~yL~I   82 (134)
                      + +++.||+|+.|||||+|
T Consensus        79 v-d~~~l~eLi~AAnyLdI   96 (96)
T 2fnj_C           79 I-APEIALELLMAANFLDC   96 (96)
T ss_dssp             C-CTTTHHHHHHHHHHHTC
T ss_pred             c-CHHHHHHHHHHHHHhCc
Confidence            5 99999999999999997

>4ajy_C Transcription elongation factor B polypeptide 1; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 2izv_C 3dcg_B 3zrc_B* 3zrf_B 3ztc_B* 3ztd_B* 3zun_B* 2c9w_C 4awj_B* 4b95_B* 4b9k_B* 2fnj_C 1lqb_B 1lm8_C 2jz3_C 2xai_B 4b9k_E*

Probab=99.76  E-value=4.5e-19  Score=118.93  Aligned_cols=77  Identities=14%  Similarity=0.094  Sum_probs=64.2

Q ss_pred             ceEEEeCCCCEEEecHHHHHH--HHhhccCCCCCC-----CCceecc------hHHHHHHHHhcCCCc-----ccccccC
Q 046604            3 ENIFEDGGQQLFKVEEQGCSR--LCSHSSTSDGTS-----EDMVVLQ------LPYIIKFCKAHGVSK-----ENEFGKG   64 (134)
Q Consensus         3 ~i~l~S~DG~~f~V~~~~~~~--~i~~~~le~~~~-----~~~Ipl~------L~~Iie~c~~h~~~k-----D~~F~~~   64 (134)
                      .|+|+|+||+.|.|++.+|.+  ++++| +++.+.     ..+||+|      |++|++||+||+.+.     -.+| ++
T Consensus         3 ~v~L~SsDg~~F~v~r~vA~~S~~ik~m-~~~~~~~~E~~~~~I~l~~V~~~iL~kViey~~~h~~~~~~~~~i~~~-~i   80 (97)
T 4ajy_C            3 YVKLISSDGHEFIVKREHALTSGTIKAM-LSGPGQFAENETNEVNFREIPSHVLSKVCMYFTYKVRYTNSSTEIPEF-PI   80 (97)
T ss_dssp             EEEEECTTCCEEEEEHHHHTTSHHHHHH-HCCC--------CEEECTTSCHHHHHHHHHHHHHHHHHTTCCSCCCCC-CC
T ss_pred             EEEEEecCCcEEEecHHHHHHhHHHHHH-HHhCCCccccCCCceECCCCCHHHHHHHHHHHHHhcccCCCcCCCCcC-cC
Confidence            589999999999999999988  99999 987532     4689998      999999999997542     2345 45


Q ss_pred             CChHHHHHHHHhhccccc
Q 046604           65 KSNDELKEMLLVADYLTI   82 (134)
Q Consensus        65 ~~~~~l~~Li~AA~yL~I   82 (134)
                       +.+.+++|+.||+||+.
T Consensus        81 -~~~~l~eLl~AAnyL~~   97 (97)
T 4ajy_C           81 -APEIALELLMAANFLDC   97 (97)
T ss_dssp             -CGGGHHHHHHHHHHHTC
T ss_pred             -CHHHHHHHHHHHhhhCC
Confidence             89999999999999983

>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus}

Probab=98.42  E-value=6.1e-07  Score=62.24  Aligned_cols=90  Identities=16%  Similarity=0.192  Sum_probs=64.3

Q ss_pred             ceEEEeCCCCEEEecHHHHHH---HHhhccCCCCCCCCceecc------hHHHHHHHHhcCCCcccccccCCChHHHHHH
Q 046604            3 ENIFEDGGQQLFKVEEQGCSR---LCSHSSTSDGTSEDMVVLQ------LPYIIKFCKAHGVSKENEFGKGKSNDELKEM   73 (134)
Q Consensus         3 ~i~l~S~DG~~f~V~~~~~~~---~i~~~~le~~~~~~~Ipl~------L~~Iie~c~~h~~~kD~~F~~~~~~~~l~~L   73 (134)
                      .|+|+. +|+.|.+.+.+...   .++.| +.... ...|.++      ++.+++|+...+       +.. +.+.+.+|
T Consensus        27 Dv~l~v-~~~~f~aHk~vLaa~S~yF~~m-f~~~~-~~~i~l~~~~~~~f~~lL~fiYtg~-------~~i-~~~~v~~l   95 (135)
T 2yy9_A           27 DATLDV-GGLVFKAHWSVLACCSHFFQRI-YGDGT-GGSVVLPAGFAEIFGLLLDFFYTGH-------LAL-TSGNRDQV   95 (135)
T ss_dssp             CEEEEE-TTEEEEECHHHHHHHCHHHHHT-CC-----CCEEECGGGHHHHHHHHHHHHHSC-------CCC-CTTTHHHH
T ss_pred             ceEEEE-CCEEEehHHHHHHHhCHHHHHH-HcCCC-CCeEEeCCCCHHHHHHHHHHHhCCC-------CCC-CHHHHHHH
Confidence            467775 68999999998766   99999 87643 3456665      999999998744       233 66779999


Q ss_pred             HHhhccccchhHHHHHHHHHHHHhcCCCHH
Q 046604           74 LLVADYLTIKDTLDYLAETLANRIKNKSVE  103 (134)
Q Consensus        74 i~AA~yL~I~~Ll~l~~~~iA~~i~gks~e  103 (134)
                      +.||++|+|+.|.+.|++.+...+.|+++.
T Consensus        96 l~~A~~l~i~~L~~~C~~~l~~~l~~~~~~  125 (135)
T 2yy9_A           96 LLAAKELRVPEAVELCQSFQPQTSVGQAQS  125 (135)
T ss_dssp             HHHHHHTTCHHHHHHHHHCCC---------
T ss_pred             HHHHHHhCcHHHHHHHHHHHHHhccCCCCC
Confidence            999999999999999999999988887753

>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens}

Probab=98.13  E-value=1.7e-05  Score=52.27  Aligned_cols=85  Identities=8%  Similarity=0.023  Sum_probs=67.2

Q ss_pred             ceEEEeCCC---CEEEecHHHHHH---HHhhccCCCCCC--CCceecc------hHHHHHHHHhcCCCcccccccCCChH
Q 046604            3 ENIFEDGGQ---QLFKVEEQGCSR---LCSHSSTSDGTS--EDMVVLQ------LPYIIKFCKAHGVSKENEFGKGKSND   68 (134)
Q Consensus         3 ~i~l~S~DG---~~f~V~~~~~~~---~i~~~~le~~~~--~~~Ipl~------L~~Iie~c~~h~~~kD~~F~~~~~~~   68 (134)
                      .++|+..+|   +.|.+.+.+...   .++.| +.....  ...|++|      ++.+++|+..-.       +.. +.+
T Consensus        10 Dv~l~v~~~~~~~~~~~Hk~iLa~~S~~F~~~-f~~~~~e~~~~i~l~~~~~~~f~~~l~~iYt~~-------~~~-~~~   80 (109)
T 2vkp_A           10 DVHFVVGPPGATRTVPAHKYVLAVGSSVFYAM-FYGDLAEVKSEIHIPDVEPAAFLILLKYMYSDE-------IDL-EAD   80 (109)
T ss_dssp             CEEEEESSTTSCEEEEECHHHHHHHCHHHHHH-HC------CCEEEETTSCHHHHHHHHHHHHHCC-------CCC-CTT
T ss_pred             cEEEEECCCCCcEEEEeeHHHHHHcCHHHHHH-hcCCcccCCCeEEeCCCCHHHHHHHHHHHcCCC-------ccC-CHH
Confidence            578888886   999999999875   88988 875421  1567766      999999998743       233 667


Q ss_pred             HHHHHHHhhccccchhHHHHHHHHHHHH
Q 046604           69 ELKEMLLVADYLTIKDTLDYLAETLANR   96 (134)
Q Consensus        69 ~l~~Li~AA~yL~I~~Ll~l~~~~iA~~   96 (134)
                      .+.+|+.+|++++++.|.+.|.+.+...
T Consensus        81 ~~~~ll~~A~~~~~~~L~~~c~~~l~~~  108 (109)
T 2vkp_A           81 TVLATLYAAKKYIVPALAKACVNFLETS  108 (109)
T ss_dssp             THHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCcHHHHHHHHHHHHhh
Confidence            8899999999999999999999998764

>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A

Probab=98.06  E-value=5.2e-05  Score=51.18  Aligned_cols=83  Identities=12%  Similarity=0.141  Sum_probs=66.6

Q ss_pred             ceEEEeCCCCEEEecHHHHHH---HHhhccCCCCCCCCceecc------hHHHHHHHHhcCCCcccccccCCChHHHHHH
Q 046604            3 ENIFEDGGQQLFKVEEQGCSR---LCSHSSTSDGTSEDMVVLQ------LPYIIKFCKAHGVSKENEFGKGKSNDELKEM   73 (134)
Q Consensus         3 ~i~l~S~DG~~f~V~~~~~~~---~i~~~~le~~~~~~~Ipl~------L~~Iie~c~~h~~~kD~~F~~~~~~~~l~~L   73 (134)
                      .++|+. +|+.|.+.+.+...   .++.| +...  ...|.++      ++.+++|+..-.       +.. +.+.+.+|
T Consensus        30 Dv~l~v-~~~~f~aHk~vLaa~S~yF~~~-f~~~--~~~i~l~~~~~~~f~~ll~~~Ytg~-------~~~-~~~~~~~l   97 (121)
T 1buo_A           30 DVVIMV-DSQEFHAHRTVLACTSKMFEIL-FHRN--SQHYTLDFLSPKTFQQILEYAYTAT-------LQA-KAEDLDDL   97 (121)
T ss_dssp             CEEEEE-SSCEEEECHHHHHHHCHHHHHH-TTSC--CSEEEECSSCHHHHHHHHHHHHHSC-------CCC-CGGGHHHH
T ss_pred             CEEEEE-CCEEEehhHHHHhhcCHHHHHH-HcCC--CcEEEeCCCCHHHHHHHHHhhcCCC-------cCC-CHHHHHHH
Confidence            467775 68999999998765   99999 8764  3455555      999999998743       233 66789999


Q ss_pred             HHhhccccchhHHHHHHHHHHHHh
Q 046604           74 LLVADYLTIKDTLDYLAETLANRI   97 (134)
Q Consensus        74 i~AA~yL~I~~Ll~l~~~~iA~~i   97 (134)
                      +.||+++++++|.+.|++.+...|
T Consensus        98 l~~A~~~~i~~L~~~c~~~l~~~I  121 (121)
T 1buo_A           98 LYAAEILEIEYLEEQCLKMLETIQ  121 (121)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHCCHHHHHHHHHHHHHhC
Confidence            999999999999999999987653

>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens}

Probab=97.99  E-value=5.3e-05  Score=53.52  Aligned_cols=95  Identities=11%  Similarity=0.088  Sum_probs=74.2

Q ss_pred             ceEEEeCCCCEEEecHHHHHH---HHhhccCCCCCC---CCceecc------hHHHHHHHHhcCCCcccccccCCChHHH
Q 046604            3 ENIFEDGGQQLFKVEEQGCSR---LCSHSSTSDGTS---EDMVVLQ------LPYIIKFCKAHGVSKENEFGKGKSNDEL   70 (134)
Q Consensus         3 ~i~l~S~DG~~f~V~~~~~~~---~i~~~~le~~~~---~~~Ipl~------L~~Iie~c~~h~~~kD~~F~~~~~~~~l   70 (134)
                      .++|+. +|+.|.+.+.+...   .++.| +.....   ...|.+|      +..+++|+....       +.. +.+.+
T Consensus        36 Dv~l~v-~~~~~~~Hk~iL~~~S~~F~~~-f~~~~~e~~~~~i~l~~~~~~~f~~~l~~~Yt~~-------~~~-~~~~~  105 (172)
T 3htm_A           36 DCCLCV-AGQEFQAHKAILAARSPVFSAM-FEHEMEESKKNRVEINDVEPEVFKEMMCFIYTGK-------APN-LDKMA  105 (172)
T ss_dssp             CEEEEE-TTEEEEECHHHHHHHCHHHHHH-HHSCCCGGGTTEEEECSSCHHHHHHHHHHHHHSC-------CTT-GGGTH
T ss_pred             ceEEEE-CCEEEEeeHHHHHHcCHHHHHH-HccCccccCCCeEEecCCCHHHHHHHHHHHhCCC-------CCC-cHHHH
Confidence            467776 68999999998766   88988 875421   2466665      999999998744       223 66788


Q ss_pred             HHHHHhhccccchhHHHHHHHHHHHHhcCCCHHHHHH
Q 046604           71 KEMLLVADYLTIKDTLDYLAETLANRIKNKSVEYIRK  107 (134)
Q Consensus        71 ~~Li~AA~yL~I~~Ll~l~~~~iA~~i~gks~eeir~  107 (134)
                      .+|+.+|++++++.|.+.|.+.+...+...+.-++..
T Consensus       106 ~~ll~~A~~~~~~~l~~~c~~~l~~~l~~~n~~~~~~  142 (172)
T 3htm_A          106 DDLLAAADKYALERLKVMCEDALCSNLSVENAAEILI  142 (172)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHTCCTTTHHHHHH
T ss_pred             HHHHHHHHHhCcHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence            9999999999999999999999998777777665543

>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens}

Probab=97.91  E-value=3.9e-05  Score=51.73  Aligned_cols=82  Identities=16%  Similarity=0.206  Sum_probs=63.7

Q ss_pred             ceEEEeCCCCEEEecHHHHHH---HHhhccCCCCCCCCceecc------hHHHHHHHHhcCCCcccccccCCChHHHHHH
Q 046604            3 ENIFEDGGQQLFKVEEQGCSR---LCSHSSTSDGTSEDMVVLQ------LPYIIKFCKAHGVSKENEFGKGKSNDELKEM   73 (134)
Q Consensus         3 ~i~l~S~DG~~f~V~~~~~~~---~i~~~~le~~~~~~~Ipl~------L~~Iie~c~~h~~~kD~~F~~~~~~~~l~~L   73 (134)
                      .++|+. +|+.|.+-+.+...   .++.| +..+. ...|.+|      ++.+++|+..-.       +.. +.+.+.+|
T Consensus        26 Dv~l~v-~~~~f~aHk~vLaa~S~yF~~~-f~~~~-~~~i~l~~~~~~~f~~ll~~iYtg~-------~~~-~~~~v~~l   94 (119)
T 3b84_A           26 DATLDV-GGLVFKAHWSVLACCSHFFQSL-YGDGS-GGSVVLPAGFAEIFGLLLDFFYTGH-------LAL-TSGNRDQV   94 (119)
T ss_dssp             CEEEEE-TTEEEEECHHHHHHHCHHHHHH-HTTTT-CCCEEECGGGHHHHHHHHHHHHHSC-------CCC-CTTTHHHH
T ss_pred             ceEEEE-CCEEEEeeHHHHhhcCHHHHHH-HCCCC-CCeEEeCCCCHHHHHHHHHHHcCCC-------Ccc-CHHHHHHH
Confidence            466765 68999999998876   88999 87643 3556665      999999998743       223 56678999


Q ss_pred             HHhhccccchhHHHHHHHHHHH
Q 046604           74 LLVADYLTIKDTLDYLAETLAN   95 (134)
Q Consensus        74 i~AA~yL~I~~Ll~l~~~~iA~   95 (134)
                      +.||++|++++|.+.|++.+..
T Consensus        95 l~~A~~~~i~~L~~~C~~~l~~  116 (119)
T 3b84_A           95 LLAARELRVPEAVELCQSFKPK  116 (119)
T ss_dssp             HHHHHHTTCHHHHHHHHHCC--
T ss_pred             HHHHHHhCcHHHHHHHHHHHHH
Confidence            9999999999999999987643

>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A

Probab=97.84  E-value=0.0001  Score=49.40  Aligned_cols=81  Identities=14%  Similarity=0.159  Sum_probs=62.9

Q ss_pred             ceEEEeCCCCEEEecHHHHHH---HHhhccCCCCC---CCCceecc------hHHHHHHHHhcCCCcccccccCCChHHH
Q 046604            3 ENIFEDGGQQLFKVEEQGCSR---LCSHSSTSDGT---SEDMVVLQ------LPYIIKFCKAHGVSKENEFGKGKSNDEL   70 (134)
Q Consensus         3 ~i~l~S~DG~~f~V~~~~~~~---~i~~~~le~~~---~~~~Ipl~------L~~Iie~c~~h~~~kD~~F~~~~~~~~l   70 (134)
                      .++|+. +|+.|.+.+.+...   .++.| +....   ....|.++      ++.+++|+..-.       +.. +.+.+
T Consensus        27 Dv~l~v-~~~~~~aHk~vLaa~S~~F~~~-f~~~~~e~~~~~i~l~~~~~~~f~~ll~~~Yt~~-------~~~-~~~~~   96 (120)
T 2if5_A           27 DVVILV-EGREFPTHRSVLAACSQYFKKL-FTSGAVVDQQNVYEIDFVSAEALTALMDFAYTAT-------LTV-STANV   96 (120)
T ss_dssp             CEEEEE-TTEEEEECHHHHHHHCHHHHHH-HHC-----CCSEEECCSSCHHHHHHHHHHHHHSC-------CCC-CGGGH
T ss_pred             CeEEEE-CCEEEeHHHHHHHHhCHHHHHH-hcCCccccCCceEEeCCCCHHHHHHHHHHHcCCC-------Ccc-CHHHH
Confidence            466766 58999999998876   88888 76542   23456665      999999998743       233 67789


Q ss_pred             HHHHHhhccccchhHHHHHHHHH
Q 046604           71 KEMLLVADYLTIKDTLDYLAETL   93 (134)
Q Consensus        71 ~~Li~AA~yL~I~~Ll~l~~~~i   93 (134)
                      .+|+.||+++++++|.+.|.+.+
T Consensus        97 ~~ll~~A~~~~i~~L~~~C~~~L  119 (120)
T 2if5_A           97 GDILSAARLLEIPAVSHVCADLL  119 (120)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHh
Confidence            99999999999999999998865

>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens}

Probab=97.83  E-value=0.00015  Score=48.41  Aligned_cols=82  Identities=12%  Similarity=0.124  Sum_probs=63.1

Q ss_pred             ceEEEeCCCCEEEecHHHHHH---HHhhccCCCCCCC-Cceecc------hHHHHHHHHhcCCCcccccccCCChHHHHH
Q 046604            3 ENIFEDGGQQLFKVEEQGCSR---LCSHSSTSDGTSE-DMVVLQ------LPYIIKFCKAHGVSKENEFGKGKSNDELKE   72 (134)
Q Consensus         3 ~i~l~S~DG~~f~V~~~~~~~---~i~~~~le~~~~~-~~Ipl~------L~~Iie~c~~h~~~kD~~F~~~~~~~~l~~   72 (134)
                      .|+|+. +|+.|.+.+.+...   .++.| +...... -.|++|      ++.+++|+..-.       +.. +.+.+.+
T Consensus        24 Dv~l~v-~~~~~~aHk~vLaa~S~yF~~~-f~~~~~~~i~l~~~~~~~~~f~~ll~~~Yt~~-------~~~-~~~~v~~   93 (116)
T 2vpk_A           24 DCTIVI-GEFQFKAHRNVLASFSEYFGAI-YRSTSENNVFLDQSQVKADGFQKLLEFIYTGT-------LNL-DSWNVKE   93 (116)
T ss_dssp             CEEEEE-TTEEEEECHHHHHHHCHHHHHH-HTTCCCSCEECCTTTCCHHHHHHHHHHHHHSC-------CCC-CTTTHHH
T ss_pred             cEEEEE-CCEEEeccHHHHhhcCHHHHHH-HcCCCCCeEEeecCCCCHHHHHHHHHHHcCCC-------ccc-CHHHHHH
Confidence            466766 58999999998766   89999 8765322 233422      999999998743       233 6678999


Q ss_pred             HHHhhccccchhHHHHHHHHHH
Q 046604           73 MLLVADYLTIKDTLDYLAETLA   94 (134)
Q Consensus        73 Li~AA~yL~I~~Ll~l~~~~iA   94 (134)
                      |+.||++|++++|.+.|++.+.
T Consensus        94 ll~~A~~~~i~~L~~~C~~~l~  115 (116)
T 2vpk_A           94 IHQAADYLKVEEVVTKCKIKME  115 (116)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHC
T ss_pred             HHHHHHHhCCHHHHHHHHHHHh
Confidence            9999999999999999998763

>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A

Probab=97.81  E-value=0.00016  Score=48.91  Aligned_cols=82  Identities=11%  Similarity=0.160  Sum_probs=65.4

Q ss_pred             ceEEEeCCCCEEEecHHHHHH---HHhhccCCCCCC--CCceec-c------hHHHHHHHHhcCCCcccccccCCChHHH
Q 046604            3 ENIFEDGGQQLFKVEEQGCSR---LCSHSSTSDGTS--EDMVVL-Q------LPYIIKFCKAHGVSKENEFGKGKSNDEL   70 (134)
Q Consensus         3 ~i~l~S~DG~~f~V~~~~~~~---~i~~~~le~~~~--~~~Ipl-~------L~~Iie~c~~h~~~kD~~F~~~~~~~~l   70 (134)
                      .|+|+. +|+.|.+.+.+...   .++.| +.....  ...|.+ +      ++.+++|+..-.       +.. +.+.+
T Consensus        31 Dv~l~v-~~~~~~aHk~iLaa~S~~F~~~-f~~~~~e~~~~i~l~~~~~~~~f~~ll~~~Ytg~-------~~~-~~~~~  100 (127)
T 1r29_A           31 DVVIVV-SREQFRAHKTVLMACSGLFYSI-FTDQLKRNLSVINLDPEINPEGFNILLDFMYTSR-------LNL-REGNI  100 (127)
T ss_dssp             CEEEEE-TTEEEEECHHHHHHHCHHHHHH-HTSTTTTTCSEEECCTTSCHHHHHHHHHHHHHSC-------CCC-CTTTH
T ss_pred             CEEEEE-CCEEEehHHHHHHHhCHHHHHH-hcCCccCCCCEEEeCCCCCHHHHHHHHHHHcCCC-------cCc-CHHHH
Confidence            467766 58899999998866   88888 775432  356777 4      999999998743       233 66789


Q ss_pred             HHHHHhhccccchhHHHHHHHHHH
Q 046604           71 KEMLLVADYLTIKDTLDYLAETLA   94 (134)
Q Consensus        71 ~~Li~AA~yL~I~~Ll~l~~~~iA   94 (134)
                      .+|+.||++|+++.|.+.|.+.+.
T Consensus       101 ~~ll~~A~~~~i~~L~~~c~~~l~  124 (127)
T 1r29_A          101 MAVMATAMYLQMEHVVDTCRKFIK  124 (127)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHH
Confidence            999999999999999999999875

>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A

Probab=97.75  E-value=8.4e-05  Score=50.03  Aligned_cols=80  Identities=19%  Similarity=0.214  Sum_probs=62.7

Q ss_pred             ceEEEeCCCCEEEecHHHHHH---HHhhccCCCCCCCCceecc------hHHHHHHHHhcCCCcccccccCCChHHHHHH
Q 046604            3 ENIFEDGGQQLFKVEEQGCSR---LCSHSSTSDGTSEDMVVLQ------LPYIIKFCKAHGVSKENEFGKGKSNDELKEM   73 (134)
Q Consensus         3 ~i~l~S~DG~~f~V~~~~~~~---~i~~~~le~~~~~~~Ipl~------L~~Iie~c~~h~~~kD~~F~~~~~~~~l~~L   73 (134)
                      .|+|+. +|+.|.+-+.+...   .++.| +...  ...|.++      ++.+++|+..-.       +.. +.+.+.+|
T Consensus        29 Dv~l~v-~~~~~~aHk~vLaa~S~yF~~~-f~~~--~~~i~l~~~~~~~f~~ll~~~Ytg~-------~~i-~~~~~~~l   96 (119)
T 2q81_A           29 DCTFVV-DGVHFKAHKAVLAACSEYFKML-FVDQ--KDVVHLDISNAAGLGQVLEFMYTAK-------LSL-SPENVDDV   96 (119)
T ss_dssp             CEEEEE-TTEEEEECHHHHHHHCHHHHHH-HHHC--CSGGGGGGCCHHHHHHHHHHHHHSC-------CCC-CTTTHHHH
T ss_pred             ceEEEE-CCEEEehhHHHHHHcCHHHHHH-HcCC--CCEEEeCCCCHHHHHHHHHHHcCCC-------Ccc-CHHHHHHH
Confidence            467765 68999999998766   88888 7653  2344443      999999998743       233 56779999


Q ss_pred             HHhhccccchhHHHHHHHHHH
Q 046604           74 LLVADYLTIKDTLDYLAETLA   94 (134)
Q Consensus        74 i~AA~yL~I~~Ll~l~~~~iA   94 (134)
                      +.||++|++++|.+.|++.++
T Consensus        97 l~~A~~l~i~~L~~~C~~~l~  117 (119)
T 2q81_A           97 LAVATFLQMQDIITACHALKS  117 (119)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHT
T ss_pred             HHHHHHhCCHHHHHHHHHHHh
Confidence            999999999999999998874

>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens}

Probab=97.72  E-value=4.4e-05  Score=52.47  Aligned_cols=90  Identities=10%  Similarity=0.102  Sum_probs=63.4

Q ss_pred             ceEEEeCCCCEEEecHHHHHH---HHhhccCCCCCC---CCceecc------hHHHHHHHHhcCCCcccccccCCChHHH
Q 046604            3 ENIFEDGGQQLFKVEEQGCSR---LCSHSSTSDGTS---EDMVVLQ------LPYIIKFCKAHGVSKENEFGKGKSNDEL   70 (134)
Q Consensus         3 ~i~l~S~DG~~f~V~~~~~~~---~i~~~~le~~~~---~~~Ipl~------L~~Iie~c~~h~~~kD~~F~~~~~~~~l   70 (134)
                      .++|+. +|+.|.+.+.+...   .++.| +.....   ...|.+|      ++.+++|+....-       .. +.+.+
T Consensus        27 Dv~l~v-~~~~~~~Hk~iL~~~S~~F~~~-f~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~-------~~-~~~~~   96 (145)
T 4eoz_A           27 DCCLCV-AGQEFQAHKAILAARSPVFSAM-FEHEMEESKKNRVEINDVEPEVFKEMMCFIYTGKA-------PN-LDKMA   96 (145)
T ss_dssp             CEEEEE-TTEEEEECHHHHHHHCHHHHHH-HHSSSHHHHHTEEEECSSCHHHHHHHHHHHHHSCC-------TT-GGGTH
T ss_pred             ceEEEE-CCEEEEeehHHHHHcCHHHHHH-HcCCCcCCCCceEEecCCCHHHHHHHHHhhccCcc-------CC-cHHHH
Confidence            467775 68899999998866   88988 875421   2456665      9999999987542       23 66788


Q ss_pred             HHHHHhhccccchhHHHHHHHHHHHHhcCCCH
Q 046604           71 KEMLLVADYLTIKDTLDYLAETLANRIKNKSV  102 (134)
Q Consensus        71 ~~Li~AA~yL~I~~Ll~l~~~~iA~~i~gks~  102 (134)
                      .+|+.+|++++++.|.+.|++.+...+...+.
T Consensus        97 ~~ll~~A~~~~~~~l~~~c~~~l~~~l~~~n~  128 (145)
T 4eoz_A           97 DDLLAAADKYALERLKVMCEDALCSNLSVENA  128 (145)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHCC----------
T ss_pred             HHHHHHHHHhCHHHHHHHHHHHHHHhCCHHHH
Confidence            99999999999999999999998866654443

>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus}

Probab=97.69  E-value=0.00011  Score=50.59  Aligned_cols=86  Identities=14%  Similarity=0.111  Sum_probs=66.0

Q ss_pred             ceEEEeCCCCEEEecHHHHHH---HHhhccCCCCCCC-Cceecc-------hHHHHHHHHhcCCCcccccccCCChHHHH
Q 046604            3 ENIFEDGGQQLFKVEEQGCSR---LCSHSSTSDGTSE-DMVVLQ-------LPYIIKFCKAHGVSKENEFGKGKSNDELK   71 (134)
Q Consensus         3 ~i~l~S~DG~~f~V~~~~~~~---~i~~~~le~~~~~-~~Ipl~-------L~~Iie~c~~h~~~kD~~F~~~~~~~~l~   71 (134)
                      .|+|+. +|+.|.+-+.+...   .++.| +.....+ ..|.+|       ++.+++|+..-.       +.. +.+.+.
T Consensus        38 Dv~l~v-~~~~f~aHk~vLaa~S~yF~~~-f~~~~~e~~~i~l~~~v~~~~~~~lL~~~Ytg~-------~~i-~~~~v~  107 (138)
T 2z8h_A           38 DVTVLV-EGQRFRAHRSVLAACSSYFHSR-IVGQTDAELTVTLPEEVTVKGFEPLIQFAYTAK-------LIL-SKDNVD  107 (138)
T ss_dssp             CEEEEE-TTEEEEECHHHHHHHCHHHHHH-HTTCCCTTEEEECCTTSCHHHHHHHHHHHHHSC-------CCC-CTTTHH
T ss_pred             CeEEEE-CCEEEechHHHHHHcCHHHHHH-HhcCCCCCceEEeCCCCCHHHHHHHHHHhcCCC-------ccc-CHHHHH
Confidence            467766 58999999998866   88998 8765322 344442       999999998743       233 667799


Q ss_pred             HHHHhhccccchhHHHHHHHHHHHHhc
Q 046604           72 EMLLVADYLTIKDTLDYLAETLANRIK   98 (134)
Q Consensus        72 ~Li~AA~yL~I~~Ll~l~~~~iA~~i~   98 (134)
                      +|+.||++|+++.|.+.|++.+...+.
T Consensus       108 ~ll~~A~~~~i~~L~~~C~~~l~~~l~  134 (138)
T 2z8h_A          108 EVCRCVEFLSVHNIEESCFQFLKFKFL  134 (138)
T ss_dssp             HHHHHHHHHTCGGGHHHHHHHTTCCCS
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHhcc
Confidence            999999999999999999998865543

>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B

Probab=97.60  E-value=0.0003  Score=52.98  Aligned_cols=92  Identities=13%  Similarity=0.100  Sum_probs=68.2

Q ss_pred             ceEEEeCCCCEEEecHHHHHH---HHhhccCCCCC-----CCCceecc------hHHHHHHHHhcCCCcccccccCCChH
Q 046604            3 ENIFEDGGQQLFKVEEQGCSR---LCSHSSTSDGT-----SEDMVVLQ------LPYIIKFCKAHGVSKENEFGKGKSND   68 (134)
Q Consensus         3 ~i~l~S~DG~~f~V~~~~~~~---~i~~~~le~~~-----~~~~Ipl~------L~~Iie~c~~h~~~kD~~F~~~~~~~   68 (134)
                      .|+|.. +|+.|.+.+.+...   .++.| +..+.     ....|+++      ++.+++|+..-.       +.. +.+
T Consensus        33 Dv~l~v-~~~~f~~Hr~vLaa~S~yF~~m-f~~~~~~~e~~~~~i~l~~v~~~~f~~ll~~~Yt~~-------~~i-~~~  102 (256)
T 3hve_A           33 DAHLVL-DGEEIPVQKNILAAASPYIRTK-LNYNPPKDDGSTYKIELEGISVMVMREILDYIFSGQ-------IRL-NED  102 (256)
T ss_dssp             CEEEEE-TTEEEEECHHHHHTTCHHHHHT-C-----------CEEECSSCCHHHHHHHHHHHHHSC-------CCC-C-C
T ss_pred             ceEEEE-CCEEEechHHHHHHcCHHHHHH-hCCCCCcccCCCCeEEeCCCCHHHHHHHHhhccCCC-------Ccc-cHh
Confidence            466765 68999999998876   89999 86542     12467765      999999998743       233 667


Q ss_pred             HHHHHHHhhccccchhHHHHHHHHHHHHhcCCCHHH
Q 046604           69 ELKEMLLVADYLTIKDTLDYLAETLANRIKNKSVEY  104 (134)
Q Consensus        69 ~l~~Li~AA~yL~I~~Ll~l~~~~iA~~i~gks~ee  104 (134)
                      .+.+|+.||++|+++.|.+.|++++...+.-.+.-.
T Consensus       103 ~v~~ll~~A~~l~i~~l~~~c~~~L~~~l~~~n~~~  138 (256)
T 3hve_A          103 TIQDVVQAADLLLLTDLKTLCCEFLEGCIAAENCIG  138 (256)
T ss_dssp             CHHHHHHHHHHHTCHHHHHHHHHHHHHTCCSSTTHH
T ss_pred             HHHHHHHHHHHHChHHHHHHHHHHHHhhCCHhhHHH
Confidence            799999999999999999999999987766555333

>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A

Probab=97.59  E-value=0.00035  Score=53.35  Aligned_cols=95  Identities=15%  Similarity=0.168  Sum_probs=69.5

Q ss_pred             ceEEEeC--CCCEEEecHHHHHH---HHhhccCCCCC---CCCceec---------c---hHHHHHHHHhcCCCcccccc
Q 046604            3 ENIFEDG--GQQLFKVEEQGCSR---LCSHSSTSDGT---SEDMVVL---------Q---LPYIIKFCKAHGVSKENEFG   62 (134)
Q Consensus         3 ~i~l~S~--DG~~f~V~~~~~~~---~i~~~~le~~~---~~~~Ipl---------~---L~~Iie~c~~h~~~kD~~F~   62 (134)
                      .|+|+..  ||+.|.+.+.+...   .++.| +..+.   ....|.+         +   ++.+++|+....       +
T Consensus        34 Dv~l~v~~~~~~~f~~Hr~vLaa~S~yF~~m-f~~~~~e~~~~~i~l~~~~~~~~v~~~~f~~ll~~~Ytg~-------~  105 (279)
T 3i3n_A           34 DITLCFGGAGGREFRAHRSVLAAATEYFTPL-LSGQFSESRSGRVEMRKWSSEPGPEPDTVEAVIEYMYTGR-------I  105 (279)
T ss_dssp             CEEEECC----CEEEECHHHHHHHCTTSGGG-CCC--------EEECCCCSSTTCSCHHHHHHHHHHHHHSE-------E
T ss_pred             CeEEEEcCCCCeEEehHHHHHHHcCHHHHHH-hcCCCccccCCeEEeccccccCCCCHHHHHHHHHhhCcCC-------c
Confidence            4777776  79999999998876   88998 87542   1233433         2   999999998733       2


Q ss_pred             cCCChHHHHHHHHhhccccchhHHHHHHHHHHHHhcCCCHHHHH
Q 046604           63 KGKSNDELKEMLLVADYLTIKDTLDYLAETLANRIKNKSVEYIR  106 (134)
Q Consensus        63 ~~~~~~~l~~Li~AA~yL~I~~Ll~l~~~~iA~~i~gks~eeir  106 (134)
                      .. +.+.+.+|+.||++|++++|.+.|++.+...+...+.-.+.
T Consensus       106 ~i-~~~~v~~ll~~A~~l~i~~L~~~c~~~L~~~l~~~n~~~i~  148 (279)
T 3i3n_A          106 RV-STGSVHEVLELADRFLLIRLKEFCGEFLKKKLHLSNCVAIH  148 (279)
T ss_dssp             EE-ETTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTTHHHHH
T ss_pred             cc-CHHHHHHHHHHHHHHCcHHHHHHHHHHHHHcCCcchHHHHH
Confidence            23 56679999999999999999999999998887766655443

>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens}

Probab=97.57  E-value=0.00012  Score=51.10  Aligned_cols=81  Identities=14%  Similarity=0.126  Sum_probs=62.3

Q ss_pred             ceEEEeCCCCEEEecHHHHHH---HHhhccCCCCC-----CCCceecc------hHHHHHHHHhcCCCcccccccCCChH
Q 046604            3 ENIFEDGGQQLFKVEEQGCSR---LCSHSSTSDGT-----SEDMVVLQ------LPYIIKFCKAHGVSKENEFGKGKSND   68 (134)
Q Consensus         3 ~i~l~S~DG~~f~V~~~~~~~---~i~~~~le~~~-----~~~~Ipl~------L~~Iie~c~~h~~~kD~~F~~~~~~~   68 (134)
                      .|+|+. +|+.|.+-+.++..   .++.| +....     ....|.++      ++.+++|+..-.       +.. +.+
T Consensus        49 Dv~l~v-~~~~f~aHk~vLaa~S~yF~~m-f~~~~~e~e~~~~~I~l~~v~~~~f~~lL~fiYtg~-------~~i-~~~  118 (144)
T 2ppi_A           49 DAHLVL-DGEEIPVQKNILAAASPYIRTK-LNYNPPKDDGSTYKIELEGISVMVMREILDYIFSGQ-------IRL-NED  118 (144)
T ss_dssp             CEEEEE-TTEEEEECHHHHHHHCHHHHHH-HHHCC-----CCCEEECCSSCHHHHHHHHHHHTTSC-------CCC-CTT
T ss_pred             ceEEEE-CCEEEehHHHHHHHcCHHHHHH-HcCCCccccCCCcEEEeCCCCHHHHHHHHHHHhCCC-------CCC-CHH
Confidence            467766 68999999998876   88888 75421     23466665      999999997532       233 677


Q ss_pred             HHHHHHHhhccccchhHHHHHHHHH
Q 046604           69 ELKEMLLVADYLTIKDTLDYLAETL   93 (134)
Q Consensus        69 ~l~~Li~AA~yL~I~~Ll~l~~~~i   93 (134)
                      .+.+|+.||++|++++|.+.|++.+
T Consensus       119 ~v~~ll~~A~~l~i~~L~~~C~~~L  143 (144)
T 2ppi_A          119 TIQDVVQAADLLLLTDLKTLCCEFL  143 (144)
T ss_dssp             THHHHHHHHHHTTCHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHhCcHHHHHHHHHHh
Confidence            8999999999999999999998754

>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens}

Probab=97.55  E-value=5.2e-05  Score=51.72  Aligned_cols=82  Identities=13%  Similarity=0.175  Sum_probs=58.7

Q ss_pred             ceEEEeCCCCEEEecHHHHHH---HHhhccCCCCCCCCceecc-------hHHHHHHHHhcCCCcccccccCCChHHHHH
Q 046604            3 ENIFEDGGQQLFKVEEQGCSR---LCSHSSTSDGTSEDMVVLQ-------LPYIIKFCKAHGVSKENEFGKGKSNDELKE   72 (134)
Q Consensus         3 ~i~l~S~DG~~f~V~~~~~~~---~i~~~~le~~~~~~~Ipl~-------L~~Iie~c~~h~~~kD~~F~~~~~~~~l~~   72 (134)
                      .++|+. +|+.|.+-+.+...   .++.| +... ....|.+|       ++.+++|+..-.       +.. +.+.+.+
T Consensus        35 Dv~l~v-~~~~~~~Hk~vLaa~S~~F~~~-f~~~-~~~~i~l~~~~~~~~f~~ll~~iYtg~-------~~i-~~~~~~~  103 (129)
T 3ga1_A           35 DVSVVV-KGHAFKAHRAVLAASSSYFRDL-FNNS-RSAVVELPAAVQPQSFQQILSFCYTGR-------LSM-NVGDQDL  103 (129)
T ss_dssp             CEEEEE-TTEEEEECHHHHHHHBHHHHHH-HHHC-CCSEEECCTTCCHHHHHHHHHHHHHSE-------EEC-CTTTHHH
T ss_pred             ceEEEE-CCEEEEehHHHHHHcCHHHHHH-HcCC-CCCEEEECCCCCHHHHHHHHHHHhCCc-------ccc-CHHHHHH
Confidence            467775 79999999988876   88888 7754 33445552       999999998733       233 5667999


Q ss_pred             HHHhhccccchhHHHHHHHHHHH
Q 046604           73 MLLVADYLTIKDTLDYLAETLAN   95 (134)
Q Consensus        73 Li~AA~yL~I~~Ll~l~~~~iA~   95 (134)
                      |+.||++|+++.|.+.|++++..
T Consensus       104 ll~~A~~~~i~~l~~~C~~~L~~  126 (129)
T 3ga1_A          104 LMYTAGFLQIQEIMEKGTEFFLK  126 (129)
T ss_dssp             HHHHHHHTTBTTSSCC-------
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHH
Confidence            99999999999999999988754

>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A

Probab=97.51  E-value=0.00083  Score=51.89  Aligned_cols=95  Identities=11%  Similarity=0.087  Sum_probs=72.4

Q ss_pred             ceEEEeCCCCEEEecHHHHHH---HHhhccCCCCC---CCCceecc------hHHHHHHHHhcCCCcccccccCCChHHH
Q 046604            3 ENIFEDGGQQLFKVEEQGCSR---LCSHSSTSDGT---SEDMVVLQ------LPYIIKFCKAHGVSKENEFGKGKSNDEL   70 (134)
Q Consensus         3 ~i~l~S~DG~~f~V~~~~~~~---~i~~~~le~~~---~~~~Ipl~------L~~Iie~c~~h~~~kD~~F~~~~~~~~l   70 (134)
                      .++|.. +|+.|.+.+.++..   .++.| +...-   ....|.++      ++.+++|+....       +.. ..+.+
T Consensus       176 Dv~l~v-~~~~f~~Hk~vLaa~S~~F~~~-f~~~~~e~~~~~i~l~~~~~~~f~~~L~~iYt~~-------~~~-~~~~~  245 (312)
T 3hqi_A          176 DCCLCV-AGQEFQAHKAILAARSPVFSAM-FEHEMEESKKNRVEINDVEPEVFKEMMCFIYTGK-------APN-LDKMA  245 (312)
T ss_dssp             CEEEEE-TTEEEEECHHHHHHHCHHHHHH-TTC-----CCSEEEECSSCHHHHHHHHHHHHHSC-------CTT-HHHHH
T ss_pred             ceEEEE-CCEEEeHHHHHHHHcCHHHHHH-hccCccccCCceEEecCCCHHHHHHHHHhhcCCC-------CCC-hHHHH
Confidence            466666 68999999988866   89998 87532   23567665      999999998743       222 45789


Q ss_pred             HHHHHhhccccchhHHHHHHHHHHHHhcCCCHHHHHH
Q 046604           71 KEMLLVADYLTIKDTLDYLAETLANRIKNKSVEYIRK  107 (134)
Q Consensus        71 ~~Li~AA~yL~I~~Ll~l~~~~iA~~i~gks~eeir~  107 (134)
                      .+|+.||++++++.|...|.+.+...+...+.-++..
T Consensus       246 ~~ll~~A~~~~~~~l~~~c~~~l~~~~~~~n~~~~l~  282 (312)
T 3hqi_A          246 DDLLAAADKYALERLKVMCEDALCSNLSVENAAEILI  282 (312)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHTTCCTTTHHHHHH
T ss_pred             HHHHHHHHHhCHHHHHHHHHHHHHccCCHHHHHHHHH
Confidence            9999999999999999999999987766666655443

>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} SCOP: d.42.1.0 PDB: 3ohv_A

Probab=97.26  E-value=7e-05  Score=50.64  Aligned_cols=79  Identities=13%  Similarity=0.151  Sum_probs=59.9

Q ss_pred             ceEEEeCCCCEEEecHHHHHH---HHhhccCCCCCC-CCceecc-------hHHHHHHHHhcCCCcccccccCCChHHHH
Q 046604            3 ENIFEDGGQQLFKVEEQGCSR---LCSHSSTSDGTS-EDMVVLQ-------LPYIIKFCKAHGVSKENEFGKGKSNDELK   71 (134)
Q Consensus         3 ~i~l~S~DG~~f~V~~~~~~~---~i~~~~le~~~~-~~~Ipl~-------L~~Iie~c~~h~~~kD~~F~~~~~~~~l~   71 (134)
                      .|+|+. +|+.|.+-+.+...   .++.| +..... ...|.+|       ++.+++|+..-+       +.. +.+.+.
T Consensus        34 Dv~l~v-~~~~f~aHk~vLaa~S~yF~~~-f~~~~~e~~~i~l~~~~~~~~f~~~l~~iYtg~-------~~~-~~~~v~  103 (125)
T 3ohu_A           34 DVTLIV-ERKEFRAHRAVLAACSEYFWQA-LVGQTKNDLVVSLPEEVTARGFGPLLQFAYTAK-------LLL-SRENIR  103 (125)
T ss_dssp             CEEEEE-TTEEEEECHHHHHHHBHHHHHH-HTTCCCSSCEEECCTTCCHHHHHHHHHHHTTSE-------EEE-CTTTHH
T ss_pred             ceEEEE-CCEEEechHHHHHHcCHHHHHH-hcCCCCCCcEEEeCCCCCHHHHHHHHHhHcCCc-------eEE-CHHHHH
Confidence            467775 68999999998876   88988 876532 2344433       999999987632       233 567789


Q ss_pred             HHHHhhccccchhHHHHHHH
Q 046604           72 EMLLVADYLTIKDTLDYLAE   91 (134)
Q Consensus        72 ~Li~AA~yL~I~~Ll~l~~~   91 (134)
                      +|+.||++|+++.|.+.|++
T Consensus       104 ~ll~~A~~l~i~~L~~~C~~  123 (125)
T 3ohu_A          104 EVIRCAEFLRMHNLEDSCFS  123 (125)
T ss_dssp             HHHHHHHHHTBSSCTTSSCC
T ss_pred             HHHHHHHHhCCHHHHHHHHH
Confidence            99999999999999988864

>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} SCOP: d.42.1.0

Probab=97.23  E-value=0.00047  Score=46.66  Aligned_cols=80  Identities=11%  Similarity=0.112  Sum_probs=56.1

Q ss_pred             ceEEEeCCCCEEEecHHHHHHHHhhccCCCCCCCCceecc------hHHHHHHHHhcCCCcccccccCCChHHHHHHHHh
Q 046604            3 ENIFEDGGQQLFKVEEQGCSRLCSHSSTSDGTSEDMVVLQ------LPYIIKFCKAHGVSKENEFGKGKSNDELKEMLLV   76 (134)
Q Consensus         3 ~i~l~S~DG~~f~V~~~~~~~~i~~~~le~~~~~~~Ipl~------L~~Iie~c~~h~~~kD~~F~~~~~~~~l~~Li~A   76 (134)
                      .|+|+. +|+.|.+-+.+... -... +...  ...|.++      ++.+++|+..-+       +.. +.+.+.+|+.|
T Consensus        32 Dv~l~v-~~~~f~aHk~vLaa-~S~y-F~~~--~~~i~l~~v~~~~f~~ll~fiYtg~-------~~i-~~~~v~~ll~a   98 (119)
T 3m5b_A           32 DTLITV-GSQEFPAHSLVLAG-VSQQ-LGRR--GQWALGEGISPSTFAQLLNFVYGES-------VEL-QPGELRPLQEA   98 (119)
T ss_dssp             CEEEEE-TTEEEEECHHHHHT-TCGG-GCCC--EEEECCSSCCHHHHHHHHHHHTTCC-------EEE-CGGGHHHHHHH
T ss_pred             ceEEEE-CCEEEeeEHHHHHH-cCHH-HhcC--CCEEEeCCCCHHHHHHHHHHHcCCC-------cCc-CHHHHHHHHHH
Confidence            366765 68999998887765 1112 2211  1334443      999999997632       233 67789999999


Q ss_pred             hccccchhHHHHHHHHHHH
Q 046604           77 ADYLTIKDTLDYLAETLAN   95 (134)
Q Consensus        77 A~yL~I~~Ll~l~~~~iA~   95 (134)
                      |++|+|+.|.+.|++++.+
T Consensus        99 A~~l~i~~l~~~C~~~~~~  117 (119)
T 3m5b_A           99 ARALGVQSLEEACWRARGD  117 (119)
T ss_dssp             HHHTTCHHHHHHHHHHC--
T ss_pred             HHHhCCHHHHHHHHHHHhh
Confidence            9999999999999998754

>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A

Probab=97.04  E-value=0.0024  Score=42.69  Aligned_cols=73  Identities=15%  Similarity=0.119  Sum_probs=57.8

Q ss_pred             ceEEEeCCCCEEEecHHHHHH---HHhhccCCCCCCCCceecc------hHHHHHHHHhcCCCcccccc-cCCChHHHHH
Q 046604            3 ENIFEDGGQQLFKVEEQGCSR---LCSHSSTSDGTSEDMVVLQ------LPYIIKFCKAHGVSKENEFG-KGKSNDELKE   72 (134)
Q Consensus         3 ~i~l~S~DG~~f~V~~~~~~~---~i~~~~le~~~~~~~Ipl~------L~~Iie~c~~h~~~kD~~F~-~~~~~~~l~~   72 (134)
                      .++|+. +|+.|.+-+.+...   .++.| +...  ...|.++      ++.+++|+..-+       + .. +.+.+.+
T Consensus        33 Dv~l~v-~~~~f~aHk~vLaa~S~~F~~~-f~~~--~~~i~l~~~~~~~f~~~l~~~Ytg~-------~~~~-~~~~~~~  100 (116)
T 3fkc_A           33 DVTVIV-EDRKFRAHKNILSASSTYFHQL-FSVA--GQVVELSFIRAEIFAEILNYIYSSK-------IVRV-RSDLLDE  100 (116)
T ss_dssp             CEEEEE-TTEEEEECHHHHHHHCHHHHHH-TTSC--CSEEEECSSCHHHHHHHHHHHTTSC-------CCSC-CHHHHHH
T ss_pred             eEEEEE-CCEEEehhHHHHHHcCHHHHHH-HcCC--CCEEEeCCCCHHHHHHHHHhhcCCC-------cCCC-CHHHHHH
Confidence            466765 68999999988866   89999 8764  3456665      999999987632       2 23 7888999


Q ss_pred             HHHhhccccchhHHH
Q 046604           73 MLLVADYLTIKDTLD   87 (134)
Q Consensus        73 Li~AA~yL~I~~Ll~   87 (134)
                      |+.||++|+|++|.+
T Consensus       101 ll~~A~~l~i~~L~~  115 (116)
T 3fkc_A          101 LIKSGQLLGVKFIAA  115 (116)
T ss_dssp             HHHHHHHHTCHHHHT
T ss_pred             HHHHHHHhCccccCc
Confidence            999999999999865

>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens}

Probab=96.97  E-value=0.00028  Score=47.74  Aligned_cols=81  Identities=11%  Similarity=0.098  Sum_probs=60.4

Q ss_pred             ceEEEeCCCCEEEecHHHHHH---HHhhccCCCCCCC-Cceecc-------hHHHHHHHHhcCCCcccccccCCChHHHH
Q 046604            3 ENIFEDGGQQLFKVEEQGCSR---LCSHSSTSDGTSE-DMVVLQ-------LPYIIKFCKAHGVSKENEFGKGKSNDELK   71 (134)
Q Consensus         3 ~i~l~S~DG~~f~V~~~~~~~---~i~~~~le~~~~~-~~Ipl~-------L~~Iie~c~~h~~~kD~~F~~~~~~~~l~   71 (134)
                      .|+|+. +|+.|.+-+.+...   .++.| +.....+ ..|.+|       ++.+++|+..-.       +.. +.+.+.
T Consensus        31 Dv~l~v-~~~~~~aHk~vLaa~S~yF~~m-f~~~~~e~~~i~l~~~v~~~~f~~lL~~iYtg~-------~~i-~~~~v~  100 (124)
T 2ihc_A           31 DVTIFV-EGQRFRAHRSVLAACSSYFHSR-IVGQADGELNITLPEEVTVKGFEPLIQFAYTAK-------LIL-SKENVD  100 (124)
T ss_dssp             CEEEEE-TTEEEEECHHHHHHHBHHHHHH-HTTC---CEEEECCTTSCHHHHHHHHHHHHHSE-------EEE-ETTTHH
T ss_pred             CEEEEE-CCEEEecHHHHHHHcCHHHHHH-HcCCCCCCceEeecCCcCHHHHHHHHHHhcCCC-------ccc-CHHHHH
Confidence            466765 58999999998876   88998 8764322 344442       999999998733       223 556799


Q ss_pred             HHHHhhccccchhHHHHHHHHH
Q 046604           72 EMLLVADYLTIKDTLDYLAETL   93 (134)
Q Consensus        72 ~Li~AA~yL~I~~Ll~l~~~~i   93 (134)
                      +|+.||++|+++.|.+.|++.+
T Consensus       101 ~ll~~A~~~~~~~L~~~C~~~l  122 (124)
T 2ihc_A          101 EVCKCVEFLSVHNIEESCFQFL  122 (124)
T ss_dssp             HHHHHHHHHTBSSCCGGGGGTC
T ss_pred             HHHHHHHHHCCHHHHHHHHHHH
Confidence            9999999999999999998754

>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens}

Probab=83.42  E-value=6.8  Score=25.37  Aligned_cols=84  Identities=8%  Similarity=0.128  Sum_probs=55.4

Q ss_pred             ceEEEeCCCCEEEecHHHHHH----HHhhccCCCCC-------CCCceecc-----hHHHHHHHHhcCCCcccccccCCC
Q 046604            3 ENIFEDGGQQLFKVEEQGCSR----LCSHSSTSDGT-------SEDMVVLQ-----LPYIIKFCKAHGVSKENEFGKGKS   66 (134)
Q Consensus         3 ~i~l~S~DG~~f~V~~~~~~~----~i~~~~le~~~-------~~~~Ipl~-----L~~Iie~c~~h~~~kD~~F~~~~~   66 (134)
                      .|+|-= .|+.|.++......    .+..| +....       ....+=+.     +..|+.|++..+-.     +..  
T Consensus         7 ~v~LNV-GG~~f~t~~~TL~~~p~s~L~~~-~~~~~~~~~~~d~~~~~fiDRdp~~F~~IL~~lr~g~l~-----~p~--   77 (107)
T 3drz_A            7 WVRLNV-GGTYFLTTRQTLCRDPKSFLYRL-CQADPDLDSDKDETGAYLIDRDPTYFGPVLNYLRHGKLV-----INK--   77 (107)
T ss_dssp             EEEEEE-TTEEEEEEHHHHTSSTTSHHHHH-HTTCGGGGGGBCTTSCEEECSCHHHHHHHHHHHHHSCCC-----CCT--
T ss_pred             EEEEEE-CCEEEEECHHHHhcCCCcchhHH-HhcCCCCCcCCCCCceEEecCChHHHHHHHHHhCCCeeC-----CCC--
Confidence            444444 49999999988876    56666 54321       11233333     99999999874321     111  


Q ss_pred             hHHHHHHHHhhccccchhHHHHHHHHHHH
Q 046604           67 NDELKEMLLVADYLTIKDTLDYLAETLAN   95 (134)
Q Consensus        67 ~~~l~~Li~AA~yL~I~~Ll~l~~~~iA~   95 (134)
                      .-....+...|.|.+|++|.+.+-..|..
T Consensus        78 ~~~~~~l~~Ea~fy~l~~L~~~l~~~i~~  106 (107)
T 3drz_A           78 DLAEEGVLEEAEFYNITSLIKLVKDKIRE  106 (107)
T ss_dssp             TSCHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence            11135688999999999999999887753

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	134
d1nexa1	70	a.157.1.1 (A:116-185) Centromere DNA-binding prote	1e-16
d1fs1b1	55	a.157.1.1 (B:86-140) Cyclin A/CDK2-associated p45,	2e-10

>d1nexa1 a.157.1.1 (A:116-185) Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 70

class: All alpha proteins
fold: Skp1 dimerisation domain-like
superfamily: Skp1 dimerisation domain-like
family: Skp1 dimerisation domain-like
domain: Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 67.0 bits (164), Expect = 1e-16
 Identities = 25/58 (43%), Positives = 36/58 (62%)

Query: 67  NDELKEMLLVADYLTIKDTLDYLAETLANRIKNKSVEYIRKFFGIENNFMPEEKEATR 124
            + L E++L A+YL IK  LD   + +A  I+ +S E IR+ F I N+F PEE+ A R
Sbjct: 13  QEMLYEIILAANYLNIKPLLDAGCKVVAEMIRGRSPEEIRRTFNIVNDFTPEEEAAIR 70

>d1fs1b1 a.157.1.1 (B:86-140) Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sapiens) [TaxId: 9606]} Length = 55

class: All alpha proteins
fold: Skp1 dimerisation domain-like
superfamily: Skp1 dimerisation domain-like
family: Skp1 dimerisation domain-like
domain: Cyclin A/CDK2-associated p45, Skp1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.8 bits (122), Expect = 2e-10
 Identities = 21/43 (48%), Positives = 27/43 (62%)

Query: 67  NDELKEMLLVADYLTIKDTLDYLAETLANRIKNKSVEYIRKFF 109
              L E++L A+YL IK  LD   +T+AN IK K+ E IRK F
Sbjct: 12  QGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTF 54

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	134
d1nexa1	70	Centromere DNA-binding protein complex Cbf3 subuni	99.95
d1fs1b1	55	Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sa	99.87
d1hv2a_	99	Elongin C {Baker's yeast (Saccharomyces cerevisiae	99.85
d2c9wc1	96	Elongin C {Human (Homo sapiens) [TaxId: 9606]}	99.83
d1nexa2	72	Centromere DNA-binding protein complex Cbf3 subuni	99.63
d1fs1b2	61	Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sa	99.62
d1buoa_	121	Promyelocytic leukaemia zinc finger (PLZF) protein	98.16
d1r29a_	122	B-cell lymphoma 6 (Bcl6) protein BTB domain {Human	97.83

>d1nexa1 a.157.1.1 (A:116-185) Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: Skp1 dimerisation domain-like
superfamily: Skp1 dimerisation domain-like
family: Skp1 dimerisation domain-like
domain: Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=1.4e-29  Score=160.05  Aligned_cols=66  Identities=42%  Similarity=0.606  Sum_probs=63.9

Q ss_pred             ccccccCCChHHHHHHHHhhccccchhHHHHHHHHHHHHhcCCCHHHHHHHhCCCCCCCHHHHHHHH
Q 046604           58 ENEFGKGKSNDELKEMLLVADYLTIKDTLDYLAETLANRIKNKSVEYIRKFFGIENNFMPEEKEATR  124 (134)
Q Consensus        58 D~~F~~~~~~~~l~~Li~AA~yL~I~~Ll~l~~~~iA~~i~gks~eeir~~f~i~~d~t~eee~~i~  124 (134)
                      |++|++. +...||+|+.|||||+|++|+++||++||++|+||||+|||++|||++|+||||++++|
T Consensus         5 D~~F~~~-d~~~L~~li~AAnyL~I~~Ll~l~c~~vA~~ikgkt~eeiR~~f~I~~D~t~eEe~~ir   70 (70)
T d1nexa1           5 DREFLKV-DQEMLYEIILAANYLNIKPLLDAGCKVVAEMIRGRSPEEIRRTFNIVNDFTPEEEAAIR   70 (70)
T ss_dssp             HHHHTCS-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCHHHHHHHHTCCCCCCHHHHHTCC
T ss_pred             HHHHHhc-CHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHccCCHHHHHHHhCCCCCCCHHHHHhcC
Confidence            7899987 99999999999999999999999999999999999999999999999999999999875

>d1fs1b1 a.157.1.1 (B:86-140) Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Skp1 dimerisation domain-like
superfamily: Skp1 dimerisation domain-like
family: Skp1 dimerisation domain-like
domain: Cyclin A/CDK2-associated p45, Skp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=3e-23  Score=124.82  Aligned_cols=52  Identities=46%  Similarity=0.593  Sum_probs=50.5

Q ss_pred             ccccccCCChHHHHHHHHhhccccchhHHHHHHHHHHHHhcCCCHHHHHHHhC
Q 046604           58 ENEFGKGKSNDELKEMLLVADYLTIKDTLDYLAETLANRIKNKSVEYIRKFFG  110 (134)
Q Consensus        58 D~~F~~~~~~~~l~~Li~AA~yL~I~~Ll~l~~~~iA~~i~gks~eeir~~f~  110 (134)
                      |++|++. +++.||+|+.|||||+|++|+++||++||++|+||||||||++||
T Consensus         4 D~~F~~~-d~~~Lf~Li~AAnyL~I~~Lldl~c~~vA~~ikgKt~eeiR~~fn   55 (55)
T d1fs1b1           4 DQEFLKV-DQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFN   55 (55)
T ss_dssp             HHHHTCS-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCHHHHHHHTC
T ss_pred             hHHHHHc-CHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHcCCCHHHHHHHhC
Confidence            7899997 999999999999999999999999999999999999999999996

>d1hv2a_ d.42.1.1 (A:) Elongin C {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: Elongin C
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.85  E-value=1.1e-22  Score=135.88  Aligned_cols=79  Identities=15%  Similarity=0.174  Sum_probs=68.9

Q ss_pred             CCceEEEeCCCCEEEecHHHHHH--HHhhccCCCCCC--CCceecc------hHHHHHHHHhcCCCc--------ccccc
Q 046604            1 NEENIFEDGGQQLFKVEEQGCSR--LCSHSSTSDGTS--EDMVVLQ------LPYIIKFCKAHGVSK--------ENEFG   62 (134)
Q Consensus         1 ~~~i~l~S~DG~~f~V~~~~~~~--~i~~~~le~~~~--~~~Ipl~------L~~Iie~c~~h~~~k--------D~~F~   62 (134)
                      .++|+|+|+||..|.|++.+|++  +|++| +++.+.  +.+||+|      |++|++||+||+...        ..+| 
T Consensus         3 ~~~v~L~SsDg~~f~V~~~~A~~S~tI~~m-l~~~~~e~~~~Ipl~~V~s~iL~kViey~~~h~~~~~~~~~~~~~~ef-   80 (99)
T d1hv2a_           3 QDFVTLVSKDDKEYEISRSAAMISPTLKAM-IEGPFRESKGRIELKQFDSHILEKAVEYLNYNLKYSGVSEDDDEIPEF-   80 (99)
T ss_dssp             CSEEEEEETTTEEEEEEHHHHTTCHHHHHH-HHSSTTTCTTEEEETTSCHHHHHHHHHHHHHHHHHHHHCSSCSSCCCC-
T ss_pred             CCeEEEEcCCCCEEEeeHHHHHHhHHHHHH-HHccCCCCcCccccCCCChHHHHHHHHHHHHhhhCcCcccccccCCCC-
Confidence            36899999999999999999999  99999 987653  4689998      999999999998752        3455 


Q ss_pred             cCCChHHHHHHHHhhccccc
Q 046604           63 KGKSNDELKEMLLVADYLTI   82 (134)
Q Consensus        63 ~~~~~~~l~~Li~AA~yL~I   82 (134)
                      ++ +++.||+|+.|||||+|
T Consensus        81 dv-d~~~l~eLi~AAnyLdI   99 (99)
T d1hv2a_          81 EI-PTEMSLELLLAADYLSI   99 (99)
T ss_dssp             CC-CHHHHHHHHHHHHHHCC
T ss_pred             CC-CHHHHHHHHHHHhhhCC
Confidence            55 89999999999999997

>d2c9wc1 d.42.1.1 (C:17-112) Elongin C {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: Elongin C
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=3e-21  Score=128.17  Aligned_cols=77  Identities=13%  Similarity=0.031  Sum_probs=62.1

Q ss_pred             ceEEEeCCCCEEEecHHHHHH--HHhhccCCCCCC-----CCceecc------hHHHHHHHHhcCCCc----ccccccCC
Q 046604            3 ENIFEDGGQQLFKVEEQGCSR--LCSHSSTSDGTS-----EDMVVLQ------LPYIIKFCKAHGVSK----ENEFGKGK   65 (134)
Q Consensus         3 ~i~l~S~DG~~f~V~~~~~~~--~i~~~~le~~~~-----~~~Ipl~------L~~Iie~c~~h~~~k----D~~F~~~~   65 (134)
                      .|+|+|+||..|.|++++|++  +|++| +++.+.     ..+||+|      |++|++||+||...+    +...++. 
T Consensus         2 ~i~L~SsDg~~f~V~~~~A~~S~tI~~m-l~~~~~~~e~~~~~IpL~nV~s~iL~kViey~~~h~~~~~~~~~~~~fdi-   79 (96)
T d2c9wc1           2 YVKLISSDGHEFIVKREHALTSGTIKAM-LSGPGQFAENETNEVNFREIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPI-   79 (96)
T ss_dssp             EEEEECTTCCEEEEEHHHHTTSHHHHHC-------------CEEECTTCCHHHHHHHHHHHHHHHHTC----CCCCCCC-
T ss_pred             EEEEEcCCCCEEEeeHHHHHHhHHHHHH-HhccCccccCCCCeeECCCCCHHHHHHHHHHHHhhccCcCCcCCCCCCcC-
Confidence            589999999999999999999  99999 987532     3689998      999999999986653    3344566 


Q ss_pred             ChHHHHHHHHhhcccc
Q 046604           66 SNDELKEMLLVADYLT   81 (134)
Q Consensus        66 ~~~~l~~Li~AA~yL~   81 (134)
                      +++.+|+|+.|||||+
T Consensus        80 ~~~~l~eLi~AAnyLd   95 (96)
T d2c9wc1          80 APEIALELLMAANFLD   95 (96)
T ss_dssp             CHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHhhhc
Confidence            9999999999999997

>d1nexa2 d.42.1.1 (A:4-103) Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.63  E-value=1.3e-16  Score=100.25  Aligned_cols=53  Identities=21%  Similarity=0.298  Sum_probs=44.2

Q ss_pred             ceEEEeCCCCEEEecHHHHHH--HHhhccCCCCCC-------CCceecc------hHHHHHHHHhcCCC
Q 046604            3 ENIFEDGGQQLFKVEEQGCSR--LCSHSSTSDGTS-------EDMVVLQ------LPYIIKFCKAHGVS   56 (134)
Q Consensus         3 ~i~l~S~DG~~f~V~~~~~~~--~i~~~~le~~~~-------~~~Ipl~------L~~Iie~c~~h~~~   56 (134)
                      .|+|+|+||+.|.|++++|++  +|++| |++.+.       ..+||||      |++|++||+||+++
T Consensus         2 ~I~L~SsDg~~F~v~~~~a~~S~tIk~m-l~~~~~~~~~~~~~~~Ipl~~V~s~iL~kVieyc~~H~~d   69 (72)
T d1nexa2           2 NVVLVSGEGERFTVDKKIAERSLLLKNY-LNDMGDDDDEDDDEIVMPVPNVRSSVLQKVIEWAEHHRDS   69 (72)
T ss_dssp             EEEEECTTSCEEEEEHHHHTTSHHHHHT-C-------------CEEECTTCCHHHHHHHHHHHHHTTTC
T ss_pred             eeEEEeCCCCEEEecHHHHHHHHHHHHH-HHhcCccccccCCCCcccCCCcCHHHHHHHHHHHHHccCC
Confidence            589999999999999999999  99999 987642       1479998      99999999999974

>d1fs1b2 d.42.1.1 (B:2-68) Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: Cyclin A/CDK2-associated p45, Skp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=4.1e-17  Score=99.66  Aligned_cols=52  Identities=19%  Similarity=0.270  Sum_probs=47.3

Q ss_pred             ceEEEeCCCCEEEecHHHHHH--HHhhccCCCCCCCCceecc------hHHHHHHHHhcCCC
Q 046604            3 ENIFEDGGQQLFKVEEQGCSR--LCSHSSTSDGTSEDMVVLQ------LPYIIKFCKAHGVS   56 (134)
Q Consensus         3 ~i~l~S~DG~~f~V~~~~~~~--~i~~~~le~~~~~~~Ipl~------L~~Iie~c~~h~~~   56 (134)
                      .|+|+|+||+.|.|++.+|++  +|++| +++.+ .++||+|      |++|++||+||+++
T Consensus         2 ~I~L~SsDg~~f~v~~~~a~~S~tI~~m-l~~~~-~~~Ipl~~V~s~iL~kVieyc~~H~~d   61 (61)
T d1fs1b2           2 SIKLQSSDGEIFEVDVEIAKQSVTIKTM-LEDLG-MDPVPLPNVNAAILKKVIQWCTHHKDD   61 (61)
T ss_dssp             EEEEECTTSCEEEEEGGGGGTCHHHHHH-HHHTC-CSSEECTTCCHHHHHHHHHHHHHHTTC
T ss_pred             eEEEEecCCCEEEecHHHHHHhHHHHHH-HhcCC-CCCcccCCcCHHHHHHHHHHHHHccCC
Confidence            489999999999999999999  99999 98754 4689998      99999999999874

>d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.16  E-value=9.5e-06  Score=53.89  Aligned_cols=80  Identities=13%  Similarity=0.167  Sum_probs=64.2

Q ss_pred             ceEEEeCCCCEEEecHHHHHH---HHhhccCCCCCCCCceecc------hHHHHHHHHhcCCCcccccccCCChHHHHHH
Q 046604            3 ENIFEDGGQQLFKVEEQGCSR---LCSHSSTSDGTSEDMVVLQ------LPYIIKFCKAHGVSKENEFGKGKSNDELKEM   73 (134)
Q Consensus         3 ~i~l~S~DG~~f~V~~~~~~~---~i~~~~le~~~~~~~Ipl~------L~~Iie~c~~h~~~kD~~F~~~~~~~~l~~L   73 (134)
                      .++|.. +|+.|.+-+.+...   .++++ +....  ..+.+|      ++.+++|+..-+       +.. +.+.+.++
T Consensus        30 Dv~l~v-~~~~~~aHk~vLaa~S~~F~~l-f~~~~--~~i~~~~v~~~~f~~ll~~~Ytg~-------i~l-~~~~v~~l   97 (121)
T d1buoa_          30 DVVIMV-DSQEFHAHRTVLACTSKMFEIL-FHRNS--QHYTLDFLSPKTFQQILEYAYTAT-------LQA-KAEDLDDL   97 (121)
T ss_dssp             CEEEEE-SSCEEEECHHHHHHHCHHHHHH-TTSCC--SEEEECSSCHHHHHHHHHHHHHSC-------CCC-CGGGHHHH
T ss_pred             eEEEEE-CCEEEEEEHHHhcccChhhhhh-ccCcc--ceeecCCCCHHHHHHHHHheEccc-------cCC-cHHHHHHH
Confidence            467775 68899999988766   99999 87653  345554      999999998643       333 77789999


Q ss_pred             HHhhccccchhHHHHHHHHHH
Q 046604           74 LLVADYLTIKDTLDYLAETLA   94 (134)
Q Consensus        74 i~AA~yL~I~~Ll~l~~~~iA   94 (134)
                      +.||++|++++|.+.|++++-
T Consensus        98 l~~A~~l~~~~L~~~C~~~L~  118 (121)
T d1buoa_          98 LYAAEILEIEYLEEQCLKMLE  118 (121)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHhCCHHHHHHHHHHHH
Confidence            999999999999999999873

>d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: B-cell lymphoma 6 (Bcl6) protein BTB domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.83  E-value=5.2e-05  Score=49.87  Aligned_cols=81  Identities=10%  Similarity=0.170  Sum_probs=61.5

Q ss_pred             ceEEEeCCCCEEEecHHHHHH---HHhhccCCCCCCC--Cc-ee---cc---hHHHHHHHHhcCCCcccccccCCChHHH
Q 046604            3 ENIFEDGGQQLFKVEEQGCSR---LCSHSSTSDGTSE--DM-VV---LQ---LPYIIKFCKAHGVSKENEFGKGKSNDEL   70 (134)
Q Consensus         3 ~i~l~S~DG~~f~V~~~~~~~---~i~~~~le~~~~~--~~-Ip---l~---L~~Iie~c~~h~~~kD~~F~~~~~~~~l   70 (134)
                      .++|+. +|+.|.+.+.+...   .++.| +.+...+  .. +-   ++   ++.++.|+..-.       +.. +.+.+
T Consensus        27 Dv~l~v-~~~~~~~Hk~vLa~~S~~F~~~-f~~~~~e~~~~~~~~~~v~~~~f~~ll~~~Ytg~-------~~i-~~~~v   96 (122)
T d1r29a_          27 DVVIVV-SREQFRAHKTVLMACSGLFYSI-FTDQLKRNLSVINLDPEINPEGFNILLDFMYTSR-------LNL-REGNI   96 (122)
T ss_dssp             CEEEEE-TTEEEEECHHHHHHHCHHHHHH-HTSTTTTTCSEEECCTTSCHHHHHHHHHHHHHSC-------CCC-CTTTH
T ss_pred             EEEEEE-CCEEEEEehHHhhhCCHHHHHH-hccchhhhcceeeeecccCHHHHHHHHhhhcCCe-------ecC-chhhH
Confidence            366775 78899999998876   88988 8654321  11 11   22   999999998633       233 66789


Q ss_pred             HHHHHhhccccchhHHHHHHHHH
Q 046604           71 KEMLLVADYLTIKDTLDYLAETL   93 (134)
Q Consensus        71 ~~Li~AA~yL~I~~Ll~l~~~~i   93 (134)
                      .+++.||++|+|+.|.+.|.+++
T Consensus        97 ~~ll~~A~~l~i~~L~~~C~~~L  119 (122)
T d1r29a_          97 MAVMATAMYLQMEHVVDTCRKFI  119 (122)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCcHHHHHHHHHHH
Confidence            99999999999999999999876