Citrus Sinensis ID: 046619

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------24
Protein Sequence
MKNQVEEKFAEFFEKWVCQLDDYSQQLIRISKESSSEAEQQALVSKLTSHYKEYYTVKWALAHEDVLVFYCPVWVSTFEMAYSWVTGWKPSIIFRLVDSLRKTMVPGGGSLAELTEQQLRKIEELRLKIRLEEEKVEREMERQQVALADRKMVELARLTSRLSNGEVDGLVEVALKGLLSGLEKVMKAADCVRLKTLKGILDVLSTKQSVDFLAGTSILQIQMSIRGTKRVQAYVNTSN
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHcccccccHHHHHHHHHccccHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHccccccHHHHHHHHHccccHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc
Coil and Loop (DISEMBL)
MKNQVEEKFAEFFEKWVCQLDDYSQQLIRISKESSSEAEQQALVSKLTSHYKEYYTVKWALAHEDVLVFYCPVWVSTFEMAYSWVTGWKPSIIFRLVDSLRktmvpgggslaELTEQQLRKIEELRLKIRLEEEKVEREMERQQVALADRKMVELARLTSRLSNGEVDGLVEVALKGLLSGLEKVMKAADCVRLKTLKGILDVLSTKQSVDFLAGTSILQIQMSIRGTKRVQAYVNTSN
Flexible Loop (DISEMBL)
MKNQVEEKFAEFFEKWVCQLDDYSQQLIRISKESSSEAEQQALVSKLTSHYKEYYTVKWALAHEDVLVFYCPVWVSTFEMAYSWVTGWKPSIIFRLVDSLRKTMVPgggslaelteqqlRKIEELRLKirleeekverEMERQQVALADRKMVELARLtsrlsngevdglVEVALKGLLSGLEKVMKAADCVRLKTLKGILDVLSTKQSVDFLAGTSILQiqmsirgtkrvqayvntsn
Low Complexity Region (SEG)
MKNQVEEKFAEFFEKWVCQLDDYSQQLIRISKessseaeqqaLVSKLTSHYKEYYTVKWALAHEDVLVFYCPVWVSTFEMAYSWVTGWKPSIIFRLVDSLRKTMVPGGGSLAELTEQQlrkieelrlkirleeekveremerQQVALADRKMVELARLTSRLSNGEVDGLVEVALKGLLSGLEKVMKAADCVRLKTLKGILDVLSTKQSVDFLAGTSILQIQMSIRGTKRVQAYVNTSN
Disordered region (IsUnstruct)
********FAEFFEKWVCQLDDYSQQLIRI************LVSKLTSHYKEYYTVKWALAHEDVLVFYCPVWVSTFEMAYSWVTGWKPSIIFRLVDSLRKTMVPGGGSLA*L*******I**LRL************************MVELARLTSRLSNGEVDGLVEVALKGLLSGLEKVMKAADCVRLKTLKGILDVLSTKQSVDFLAGTSILQIQMSIRGTKRVQAY*****
Disordered Region (DISOPRED)
*****EE***EFFEKWVCQLDDYSQ****************ALVSKLTSHYKEYYTVKWALAHEDVLVFYCPVWVSTFEMAYSWVTGWKPSIIFRLVDSLR****************QLRKIEELRLK***********MERQQVALADRKMVEL***************VEVALKGLLSGLEKVMKAADCVRLKTLKGILDVLSTKQSVDFLAGTSILQIQMS***************
Disordered Region (DISEMBL)
MKNQVEEKFAEFFEKWVCQLDDYSQQLIRIS************VSKLTSHYKEYYTVKWALAHEDVLVFYCPVWVSTFEMAYSWVTGWKPSIIFRLVDSLRKTMVPGGGSLAELTEQQLRKIEELRLKIRLEEEKVEREMERQQVALADRKMVELARLTSRLSNGEVDGLVEVALKGLLSGLEKVMKAADCVRLKTLKGILDVLSTKQSVDFLAGTSILQIQMSIRGTKRVQAYVNTSN
Disordered Region (DISPRO)
*****EEKFAEFFEKWVCQLDDYSQQLIRISKESSSEAEQQALVSKLTSHYKEYYTVKWALAHEDVLVFYCPVWVSTFEMAYSWVTGWKPSIIFRLVDSLRKTMVPGGGSLAELTEQQLRKIEELRLKIRLEEEKVEREMERQQVALADRKMVELARLTSRLSNGEVDGLVEVALKGLLSGLEKVMKAADCVRLKTLKGILDVLSTKQSVDFLAGTSILQIQMSIRGTKR*********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKNQVEEKFAEFFEKWVCQLDDYSQQLIRISKESSSEAEQQALVSKLTSHYKEYYTVKWALAHEDVLVFYCPVWVSTFEMAYSWVTGWKPSIIFRLVDSLRKTMVPGGGSLAELxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxMVELARLTSRLSNGEVDGLVEVALKGLLSGLEKVMKAADCVRLKTLKGILDVLSTKQSVDFLAGTSILQIQMSIRGTKRVQAYVNTSN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	239	2.2.26 [Sep-21-2011]
O24160	456	TGACG-sequence-specific D	N/A	no	0.803	0.421	0.269	7e-13
Q41558	476	Transcription factor HBP-	N/A	no	0.774	0.388	0.258	3e-11
P43273	330	Transcription factor TGA2	no	no	0.811	0.587	0.248	1e-10
Q39163	330	Transcription factor TGA5	no	no	0.769	0.557	0.263	3e-10
P23923	332	Transcription factor HBP-	N/A	no	0.815	0.587	0.252	6e-10
Q39140	330	Transcription factor TGA6	no	no	0.690	0.5	0.267	9e-10
Q39237	368	Transcription factor TGA1	no	no	0.661	0.429	0.262	3e-07
Q39162	364	Transcription factor TGA4	no	no	0.661	0.434	0.262	5e-07
Q93ZE2	368	Transcription factor TGA7	no	no	0.665	0.432	0.245	5e-07
Q39234	384	Transcription factor TGA3	no	no	0.640	0.398	0.232	2e-06

>sp|O24160|TGA21_TOBAC TGACG-sequence-specific DNA-binding protein TGA-2.1 OS=Nicotiana tabacum GN=TGA21 PE=1 SV=1

 Score = 74.3 bits (181), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 56/208 (26%), Positives = 103/208 (49%), Gaps = 16/208 (7%)

Query: 9   FAEFFEKWVCQLDDYSQQLIRISKESSSEAEQQALVSKLTSHYKEYYTVKWALAHEDVLV 68
           F   + +W+ + + +  +L       +S+ E +++V+ +T+H+ E + VK   A  DV  
Sbjct: 236 FDAEYSRWLEEHNKHINELRTAVNAHASDPELRSIVNNVTAHFDEVFRVKGNAAKADVFH 295

Query: 69  FYCPVWVSTFEMAYSWVTGWKPSIIFRLVDSLRKTMVPGGGSLAELTEQQLRKIEELRLK 128
               +W +  E  + W+ G++PS + +L+ +           L  LTEQQL  I  L+  
Sbjct: 296 VLSGMWKTPAERCFMWIGGFRPSELLKLLVN----------QLEPLTEQQLAGIYNLQQS 345

Query: 129 IRLEEEKVEREMERQQVALADRKMVELARLTSRLSNGEVD---GLVEVALKGLLSGLEKV 185
               E+ + + ME  Q +LA+   +         S+G+V    G + +A+ G L  LE  
Sbjct: 346 SHQAEDALSQGMEALQQSLAE--TLANGSPAPEGSSGDVANYMGQMAMAM-GKLGTLEGF 402

Query: 186 MKAADCVRLKTLKGILDVLSTKQSVDFL 213
           ++ AD +R +TL+ +  VL+T+QS   L
Sbjct: 403 LRQADNLRQQTLQQMHRVLTTRQSARAL 430

Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription.
Nicotiana tabacum (taxid: 4097)

>sp|Q41558|HBP1C_WHEAT Transcription factor HBP-1b(c1) (Fragment) OS=Triticum aestivum PE=1 SV=2

 Score = 68.9 bits (167), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 52/201 (25%), Positives = 99/201 (49%), Gaps = 16/201 (7%)

Query: 13  FEKWVCQLDDYSQQLIRISKESSSEAEQQALVSKLTSHYKEYYTVKWALAHEDVLVFYCP 72
           + +W+ + + +  +L   +   + + + + +V  + S Y E++ +K   A  DV      
Sbjct: 263 YARWLEEHNKHINELRAAANAHAGDDDLRKIVDSIMSQYDEFFRLKGVAAKADVFHVLSG 322

Query: 73  VWVSTFEMAYSWVTGWKPSIIFRLVDSLRKTMVPGGGSLAELTEQQLRKIEELRLKIRLE 132
           +W +  E  + W+ G++ S + +L+           G L  LTEQQL  I  L+   +  
Sbjct: 323 MWKTPAERCFMWLGGFRSSELLKLL----------AGQLEPLTEQQLTGICNLQQSSQQA 372

Query: 133 EEKVEREMERQQVALADRKMVELARLTSRLSNGEVD---GLVEVALKGLLSGLEKVMKAA 189
           E+ + + ME  Q +LA+   +    L    S+G V    G + +A+ G L  LE  ++ A
Sbjct: 373 EDALSQGMEALQQSLAE--TLASGSLGPAGSSGNVASYMGQMAMAM-GKLGTLENFLRQA 429

Query: 190 DCVRLKTLKGILDVLSTKQSV 210
           D +RL+TL+ +  +L+T+QS 
Sbjct: 430 DNLRLQTLQQMQRILTTRQSA 450

Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters.

Triticum aestivum (taxid: 4565)

>sp|P43273|TGA2_ARATH Transcription factor TGA2 OS=Arabidopsis thaliana GN=TGA2 PE=1 SV=1

 Score = 67.0 bits (162), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 51/205 (24%), Positives = 97/205 (47%), Gaps = 11/205 (5%)

Query: 9   FAEFFEKWVCQLDDYSQQLIRISKESSSEAEQQALVSKLTSHYKEYYTVKWALAHEDVLV 68
           F     +W+ + +    +L       + ++E + +V  + +HY+E + +K   A  DV  
Sbjct: 114 FDAEHSRWLEEKNKQMNELRSALNAHAGDSELRIIVDGVMAHYEELFRIKSNAAKNDVFH 173

Query: 69  FYCPVWVSTFEMAYSWVTGWKPSIIFRLVDSLRKTMVPGGGSLAELTEQQLRKIEELRLK 128
               +W +  E  + W+ G++ S + +L+             L  +TE+QL  I  L+  
Sbjct: 174 LLSGMWKTPAERCFLWLGGFRSSELLKLL----------ANQLEPMTERQLMGINNLQQT 223

Query: 129 IRLEEEKVEREMERQQVALADRKMVELARLTSRLSNGEVDGLVEVALKGLLSGLEKVMKA 188
            +  E+ + + ME  Q +LAD         +S  +     G + +A+ G L  LE  ++ 
Sbjct: 224 SQQAEDALSQGMESLQQSLADTLSSGTLGSSSSGNVASYMGQMAMAM-GKLGTLEGFIRQ 282

Query: 189 ADCVRLKTLKGILDVLSTKQSVDFL 213
           AD +RL+TL+ ++ VL+T+QS   L
Sbjct: 283 ADNLRLQTLQQMIRVLTTRQSARAL 307

Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Required to induce the systemic acquired resistance (SAR) via the regulation of pathogenesis-related genes expression. Binding to the as-1 element of PR-1 promoter is salicylic acid-inducible and mediated by NPR1. Could also bind to the C-boxes (5'-ATGACGTCAT-3') with high affinity.

Arabidopsis thaliana (taxid: 3702)

>sp|Q39163|TGA5_ARATH Transcription factor TGA5 OS=Arabidopsis thaliana GN=TGA5 PE=1 SV=2

 Score = 65.9 bits (159), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 53/201 (26%), Positives = 97/201 (48%), Gaps = 17/201 (8%)

Query: 13  FEKWVCQLDDYSQQLIRISKESSSEA---EQQALVSKLTSHYKEYYTVKWALAHEDVLVF 69
           + +W    +D ++Q+  +S    S A   E + +V  + +HY+E Y +K   A  DV   
Sbjct: 118 YRRWQ---EDKNRQMKELSSAIDSHATDSELRIIVDGVIAHYEELYRIKGNAAKSDVFHL 174

Query: 70  YCPVWVSTFEMAYSWVTGWKPSIIFRLVDSLRKTMVPGGGSLAELTEQQLRKIEELRLKI 129
              +W +  E  + W+ G++ S + +L+ S           L  LTEQQ   I  L+   
Sbjct: 175 LSGMWKTPAERCFLWLGGFRSSELLKLIAS----------QLEPLTEQQSLDINNLQQSS 224

Query: 130 RLEEEKVEREMERQQVALADRKMVELARLTSRLSNGEVDGLVEVALKGLLSGLEKVMKAA 189
           +  E+ + + M+  Q +LAD         +S  +     G + +A+ G L  LE  ++ A
Sbjct: 225 QQAEDALSQGMDNLQQSLADTLSSGTLGSSSSGNVASYMGQMAMAM-GKLGTLEGFIRQA 283

Query: 190 DCVRLKTLKGILDVLSTKQSV 210
           D +RL+T + ++ +L+T+QS 
Sbjct: 284 DNLRLQTYQQMVRLLTTRQSA 304

Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|P23923|HBP1B_WHEAT Transcription factor HBP-1b(c38) OS=Triticum aestivum PE=2 SV=1

 Score = 64.3 bits (155), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 52/206 (25%), Positives = 97/206 (47%), Gaps = 11/206 (5%)

Query: 9   FAEFFEKWVCQLDDYSQQLIRISKESSSEAEQQALVSKLTSHYKEYYTVKWALAHEDVLV 68
           F   + +W+ + +    +L       + + E +++V K+ SHY E +  K   A  DV  
Sbjct: 114 FDTEYARWLEEHNRQVNELRAAVNAHAGDTELRSVVEKIMSHYDEIFKQKGNAAKADVFH 173

Query: 69  FYCPVWVSTFEMAYSWVTGWKPSIIFRLVDSLRKTMVPGGGSLAELTEQQLRKIEELRLK 128
               +W +  E  + W+ G++PS + +L+ +           L  LTEQQL  I  L+  
Sbjct: 174 VLSGMWKTPAERCFLWLGGFRPSELLKLLST----------QLEPLTEQQLSGICNLQQS 223

Query: 129 IRLEEEKVEREMERQQVALADRKMVELARLTSRLSNGEVDGLVEVALK-GLLSGLEKVMK 187
            +  E+ + + ME  Q +LA+     +    S  +    + + ++A+  G L  LE  + 
Sbjct: 224 SQQAEDALSQGMEALQQSLAETLAGSIGSSGSGSTGNVANYMGQMAMAMGKLGTLENFLS 283

Query: 188 AADCVRLKTLKGILDVLSTKQSVDFL 213
            AD +R +TL+ +  +L+T+QS   L
Sbjct: 284 QADNLRQQTLQQMQRILTTRQSARAL 309

Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters.

Triticum aestivum (taxid: 4565)

>sp|Q39140|TGA6_ARATH Transcription factor TGA6 OS=Arabidopsis thaliana GN=TGA6 PE=1 SV=2

 Score = 63.9 bits (154), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 47/176 (26%), Positives = 87/176 (49%), Gaps = 11/176 (6%)

Query: 35  SSEAEQQALVSKLTSHYKEYYTVKWALAHEDVLVFYCPVWVSTFEMAYSWVTGWKPSIIF 94
           + + E + +V  + +HY+E + +K   A  DV      +W +  E  + W+ G++ S + 
Sbjct: 140 AGDTELRIIVDGVMAHYEELFRIKSNAAKNDVFHLLSGMWKTPAERCFLWLGGFRSSELL 199

Query: 95  RLVDSLRKTMVPGGGSLAELTEQQLRKIEELRLKIRLEEEKVEREMERQQVALADRKMVE 154
           +L+             L  +TE+Q+  I  L+   +  E+ + + ME  Q +LAD     
Sbjct: 200 KLL----------ANQLEPMTERQVMGINSLQQTSQQAEDALSQGMESLQQSLADTLSSG 249

Query: 155 LARLTSRLSNGEVDGLVEVALKGLLSGLEKVMKAADCVRLKTLKGILDVLSTKQSV 210
               +S  +     G + +A+ G L  LE  ++ AD +RL+TL+ +L VL+T+QS 
Sbjct: 250 TLGSSSSDNVASYMGQMAMAM-GQLGTLEGFIRQADNLRLQTLQQMLRVLTTRQSA 304

Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|Q39237|TGA1_ARATH Transcription factor TGA1 OS=Arabidopsis thaliana GN=TGA1 PE=1 SV=2

 Score = 55.8 bits (133), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 46/175 (26%), Positives = 81/175 (46%), Gaps = 17/175 (9%)

Query: 36  SEAEQQALVSKLTSHYKEYYTVKWALAHEDVLVFYCPVWVSTFEMAYSWVTGWKPSIIFR 95
           ++ E ++LV     HY E + +K + A  DV      +W ++ E  + W+ G++PS    
Sbjct: 183 NDIELRSLVENAMKHYFELFRMKSSAAKADVFFVMSGMWRTSAERFFLWIGGFRPS---- 238

Query: 96  LVDSLRKTMVPGGGSLAELTEQQLRKIEELRLKIRLEEEKVEREMERQQVALADRKMVEL 155
               L K ++P       LT+QQL  +  L+   +  E+ + + ME+ Q  LAD      
Sbjct: 239 ---DLLKVLLP---HFDVLTDQQLLDVCNLKQSCQQAEDALTQGMEKLQHTLAD------ 286

Query: 156 ARLTSRLSNGEVDGLVEVALKGLLSGLEKVMKAADCVRLKTLKGILDVLSTKQSV 210
                +L  G     V  A+   L  L   +  AD +R +TL+ +  +L+T+Q+ 
Sbjct: 287 CVAAGQLGEGSYIPQVNSAMD-RLEALVSFVNQADHLRHETLQQMYRILTTRQAA 340

Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|Q39162|TGA4_ARATH Transcription factor TGA4 OS=Arabidopsis thaliana GN=TGA4 PE=1 SV=2

 Score = 54.7 bits (130), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 46/175 (26%), Positives = 83/175 (47%), Gaps = 17/175 (9%)

Query: 36  SEAEQQALVSKLTSHYKEYYTVKWALAHEDVLVFYCPVWVSTFEMAYSWVTGWKPSIIFR 95
           S+ E ++LV     HY + + +K A A  DV      +W ++ E  + W+ G++PS    
Sbjct: 179 SDIELRSLVENAMKHYFQLFRMKSAAAKIDVFYVMSGMWKTSAERFFLWIGGFRPS---- 234

Query: 96  LVDSLRKTMVPGGGSLAELTEQQLRKIEELRLKIRLEEEKVEREMERQQVALADRKMVEL 155
               L K ++P       LT+QQL  +  LR   +  E+ + + ME+ Q  LA+      
Sbjct: 235 ---ELLKVLLP---HFDPLTDQQLLDVCNLRQSCQQAEDALSQGMEKLQHTLAE------ 282

Query: 156 ARLTSRLSNGEVDGLVEVALKGLLSGLEKVMKAADCVRLKTLKGILDVLSTKQSV 210
           +    +L  G     +  A++  L  L   +  AD +R +TL+ +  +L+T+Q+ 
Sbjct: 283 SVAAGKLGEGSYIPQMTCAME-RLEALVSFVNQADHLRHETLQQMHRILTTRQAA 336

Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|Q93ZE2|TGA7_ARATH Transcription factor TGA7 OS=Arabidopsis thaliana GN=TGA7 PE=1 SV=1

 Score = 54.7 bits (130), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 43/175 (24%), Positives = 86/175 (49%), Gaps = 16/175 (9%)

Query: 36  SEAEQQALVSKLTSHYKEYYTVKWALAHEDVLVFYCPVWVSTFEMAYSWVTGWKPSIIFR 95
           S+ E + LV    +HY   + +K   A  DV      +W ++ E  + W+ G++PS +  
Sbjct: 182 SDIELKMLVESCLNHYANLFQMKSDAAKADVFYLISGMWRTSTERFFQWIGGFRPSELLN 241

Query: 96  LVDSLRKTMVPGGGSLAELTEQQLRKIEELRLKIRLEEEKVEREMERQQVALADRKMVEL 155
           +V       +P    L  LT+QQ+ ++  L+   +  E+ + + +++ Q +LA+  +++ 
Sbjct: 242 VV-------MP---YLQPLTDQQILEVRNLQQSSQQAEDALSQGIDKLQQSLAESIVID- 290

Query: 156 ARLTSRLSNGEVDGLVEVALKGLLSGLEKVMKAADCVRLKTLKGILDVLSTKQSV 210
           A + S      +   +E      L  LE  +  AD +R +TL+ +  +L+T+QS 
Sbjct: 291 AVIESTHYPTHMAAAIEN-----LQALEGFVNQADHLRQQTLQQMAKILTTRQSA 340

Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1.

Arabidopsis thaliana (taxid: 3702)

>sp|Q39234|TGA3_ARATH Transcription factor TGA3 OS=Arabidopsis thaliana GN=TGA3 PE=1 SV=1

 Score = 52.8 bits (125), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/168 (23%), Positives = 84/168 (50%), Gaps = 15/168 (8%)

Query: 43  LVSKLTSHYKEYYTVKWALAHEDVLVFYCPVWVSTFEMAYSWVTGWKPSIIFRLVDSLRK 102
           LV    +HY   + +K   A  DV      +W ++ E  + W+ G++PS +  +V     
Sbjct: 204 LVDSCLNHYANLFRMKADAAKADVFFLMSGMWRTSTERFFQWIGGFRPSELLNVV----- 258

Query: 103 TMVPGGGSLAELTEQQLRKIEELRLKIRLEEEKVEREMERQQVALADRKMVELARLTSRL 162
             +P    +  LT+QQL ++  L+   +  EE + + +++ Q  L +   +++ ++   +
Sbjct: 259 --MP---YVEPLTDQQLLEVRNLQQSSQQAEEALSQGLDKLQQGLVESIAIQI-KVVESV 312

Query: 163 SNGEVDGLVEVALKGLLSGLEKVMKAADCVRLKTLKGILDVLSTKQSV 210
           ++G     +  A++  L  LE  +  AD +R +TL+ +  +L+T+Q+ 
Sbjct: 313 NHG---APMASAMEN-LQALESFVNQADHLRQQTLQQMSKILTTRQAA 356

Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Required to induce the systemic acquired resistance (SAR) via the regulation of pathogenesis-related genes expression. Binding to the as-1 element of PR-1 promoter is salicylic acid-inducible and mediated by NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	239
188509971	253	predicted protein [Gossypioides kirkii]	0.937	0.885	0.669	4e-80
49333398	253	predicted protein [Gossypium hirsutum]	0.937	0.885	0.661	1e-78
359483528	245	PREDICTED: uncharacterized protein LOC10	0.974	0.951	0.647	4e-77
255587473	253	conserved hypothetical protein [Ricinus	0.962	0.909	0.610	1e-74
297740515	211	unnamed protein product [Vitis vinifera]	0.857	0.971	0.558	4e-66
4539384	229	putative protein [Arabidopsis thaliana]	0.953	0.995	0.543	2e-63
30684489	232	transcription factor-related protein [Ar	0.953	0.982	0.543	3e-63
356557749	251	PREDICTED: transcription factor TGA5-lik	0.953	0.908	0.578	3e-63
356546572	254	PREDICTED: transcription factor TGA6-lik	0.949	0.893	0.572	1e-62
297800196	228	hypothetical protein ARALYDRAFT_354881 [	0.928	0.973	0.552	4e-61

>gi|188509971|gb|ACD56655.1| predicted protein [Gossypioides kirkii]

 Score =  303 bits (776), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 160/239 (66%), Positives = 194/239 (81%), Gaps = 15/239 (6%)

Query: 1   MKNQVEEKFAEFFEKWVCQLDDYSQQLIRISKESSSEAEQQALVSKLTSHYKEYYTVKWA 60
           MK+ V E+F+EFF+KW+CQLD Y QQL+R+  E  SE+EQQALVSKLT+HYKEYYTVKWA
Sbjct: 1   MKSPVGERFSEFFDKWICQLDGYLQQLVRVPSEGLSESEQQALVSKLTAHYKEYYTVKWA 60

Query: 61  LAHEDVLVFYCPVWVSTFEMAYSWVTGWKPSIIFRLVDSLRKTMVPGGGSLAELTEQQLR 120
            AHEDVLVFYCPVW+S  E AYSW+TGWKPS+IF +V+S R+       S+AELTE+Q+R
Sbjct: 61  AAHEDVLVFYCPVWLSKLENAYSWLTGWKPSMIFGVVESTRRK------SVAELTEEQVR 114

Query: 121 KIEELRLKIRLEEEKVEREMERQQVALADRKMVELARLTSRLSNGE---------VDGLV 171
           KIE+LR+KI+LEEEKVEREMERQQVA+ADRK+VEL R   R+ N E         V+GLV
Sbjct: 115 KIEQLRVKIKLEEEKVEREMERQQVAMADRKVVELVRTARRIRNEELVVVVGNHQVEGLV 174

Query: 172 EVALKGLLSGLEKVMKAADCVRLKTLKGILDVLSTKQSVDFLAGTSILQIQMSIRGTKR 230
           EVALKG+L+GLE+VMKAADCVRLK LKG+LD+L+  QS+DFLAGT +LQIQ+   G  R
Sbjct: 175 EVALKGVLAGLERVMKAADCVRLKALKGVLDILNPSQSLDFLAGTCMLQIQIRKWGQNR 233

Source: Gossypioides kirkii

Species: Gossypioides kirkii

Genus: Gossypioides

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|49333398|gb|AAT64037.1| predicted protein [Gossypium hirsutum]

 Score =  298 bits (763), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 158/239 (66%), Positives = 192/239 (80%), Gaps = 15/239 (6%)

Query: 1   MKNQVEEKFAEFFEKWVCQLDDYSQQLIRISKESSSEAEQQALVSKLTSHYKEYYTVKWA 60
           M + V E+F+EFF+KW+CQLD Y QQL+R+S+E  SE+E Q LVSKLT+HYKEYYTVKWA
Sbjct: 1   MTSPVGERFSEFFDKWICQLDGYLQQLVRVSREGLSESEHQTLVSKLTAHYKEYYTVKWA 60

Query: 61  LAHEDVLVFYCPVWVSTFEMAYSWVTGWKPSIIFRLVDSLRKTMVPGGGSLAELTEQQLR 120
            AHEDVLVFYCPVW+S  E A SW+TGWKPS+IF +V+S+R+       S+AELTE+Q+R
Sbjct: 61  AAHEDVLVFYCPVWLSKLENACSWLTGWKPSMIFGVVESMRRK------SVAELTEEQVR 114

Query: 121 KIEELRLKIRLEEEKVEREMERQQVALADRKMVELARLTSRLSNGE---------VDGLV 171
           KIE+LR+KI+LEEEKVEREMERQQVA+ADRKMVEL R   R+ N E         V+GLV
Sbjct: 115 KIEQLRVKIKLEEEKVEREMERQQVAMADRKMVELVRTARRIRNEELVVVVGNHQVEGLV 174

Query: 172 EVALKGLLSGLEKVMKAADCVRLKTLKGILDVLSTKQSVDFLAGTSILQIQMSIRGTKR 230
           EVALKG+L+GLE+VMKAADCVRLK LKG+LDVL+  QS+DFLAG  +LQIQ+   G  R
Sbjct: 175 EVALKGVLAGLERVMKAADCVRLKALKGVLDVLNPSQSLDFLAGICMLQIQIRKWGQNR 233

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359483528|ref|XP_002266016.2| PREDICTED: uncharacterized protein LOC100256671 [Vitis vinifera]

 Score =  293 bits (750), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 154/238 (64%), Positives = 191/238 (80%), Gaps = 5/238 (2%)

Query: 1   MKNQVEEKFAEFFEKWVCQLDDYSQQLIRISKESSSEAEQQALVSKLTSHYKEYYTVKWA 60
           MK+ VEE+F EF+EKW+CQL++  Q+L+++S+E     E++ALVS++T+H KEYY  KWA
Sbjct: 7   MKSPVEERFIEFYEKWMCQLEENLQRLLKVSREIPHRTEREALVSRVTTHLKEYYNAKWA 66

Query: 61  LAHEDVLVFYCPVWVSTFEMAYSWVTGWKPSIIFRLVDSLRKTMVPGGGSLAELTEQQLR 120
            AHEDVL F+ PVW+S  E AY WVTGWKPS  FRL++SLR+T VP G SLAE++E+Q++
Sbjct: 67  AAHEDVLAFFSPVWLSPLENAYLWVTGWKPSTAFRLIESLRQTGVP-GESLAEMSEEQMK 125

Query: 121 KIEELRLKIRLEEEKVEREMERQQVALADRKMVELARLTSRLSNG----EVDGLVEVALK 176
           K+EELR++IRLEEEKVEREMERQQVALADRKMVELAR  SR+SNG    E +GLVEVALK
Sbjct: 126 KVEELRVRIRLEEEKVEREMERQQVALADRKMVELARAASRVSNGGLASEENGLVEVALK 185

Query: 177 GLLSGLEKVMKAADCVRLKTLKGILDVLSTKQSVDFLAGTSILQIQMSIRGTKRVQAY 234
           GLLSGLE+VMKAADC RLKTLKGIL+VLS  Q VDFLA T +  + +   G KR   +
Sbjct: 186 GLLSGLERVMKAADCARLKTLKGILEVLSPLQCVDFLAATLMFHVNLRKWGIKRAGPH 243

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255587473|ref|XP_002534284.1| conserved hypothetical protein [Ricinus communis] gi|223525579|gb|EEF28101.1| conserved hypothetical protein [Ricinus communis]

 Score =  285 bits (729), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 149/244 (61%), Positives = 184/244 (75%), Gaps = 14/244 (5%)

Query: 1   MKNQVEEKFAEFFEKWVCQLDDYSQQL-------IRISKESSSEAEQ-QALVSKLTSHYK 52
           MKN+VE++F+EF EKW+  LD Y  QL        R++K  +   E+ QA+VSK+  HYK
Sbjct: 3   MKNKVEDRFSEFLEKWMRLLDGYLLQLRKVVSSKDRLNKHGTYCDEKLQAIVSKVAQHYK 62

Query: 53  EYYTVKWALAHEDVLVFYCPVWVSTFEMAYSWVTGWKPSIIFRLVDSLRKTM-VPGGGS- 110
           EYY +KWALAHEDVL F+ P W+S  E A SW+T WKPS++F+LVDSLR    VPG  S 
Sbjct: 63  EYYIIKWALAHEDVLAFFSPTWISPLETASSWITDWKPSVVFKLVDSLRTNHRVPGPSST 122

Query: 111 LAELTEQQLRKIEELRLKIRLEEEKVEREMERQQVALADRKMVELARLTSRLSN----GE 166
           LAELT++Q+RKIEEL+LKIRLEE+KVEREMERQQVA+ADRKMVELAR   R+ N     +
Sbjct: 123 LAELTQEQVRKIEELKLKIRLEEQKVEREMERQQVAIADRKMVELARWVYRVKNDGKVSQ 182

Query: 167 VDGLVEVALKGLLSGLEKVMKAADCVRLKTLKGILDVLSTKQSVDFLAGTSILQIQMSIR 226
           V+GLV+ AL G L+GLEKVMKAADCVRL+ LKGILDVLS  Q V+FLA T++L IQ+   
Sbjct: 183 VEGLVQAALNGALAGLEKVMKAADCVRLRALKGILDVLSPFQCVEFLAATAMLHIQLRQW 242

Query: 227 GTKR 230
           G +R
Sbjct: 243 GKRR 246

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297740515|emb|CBI30697.3| unnamed protein product [Vitis vinifera]

 Score =  257 bits (656), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 133/238 (55%), Positives = 163/238 (68%), Gaps = 33/238 (13%)

Query: 1   MKNQVEEKFAEFFEKWVCQLDDYSQQLIRISKESSSEAEQQALVSKLTSHYKEYYTVKWA 60
           MK+ VEE+F EF+EKW+CQL++  Q+L+++S+E     E++ALVS++T+H KEYY  KWA
Sbjct: 1   MKSPVEERFIEFYEKWMCQLEENLQRLLKVSREIPHRTEREALVSRVTTHLKEYYNAKWA 60

Query: 61  LAHEDVLVFYCPVWVSTFEMAYSWVTGWKPSIIFRLVDSLRKTMVPGGGSLAELTEQQLR 120
            AHEDVL F+ PVW+S  E AY WVTGWKPS  FRL++SLR+T VP G SLAE+      
Sbjct: 61  AAHEDVLAFFSPVWLSPLENAYLWVTGWKPSTAFRLIESLRQTGVP-GESLAEM------ 113

Query: 121 KIEELRLKIRLEEEKVEREMERQQVALADRKMVELARLTSRLSNG----EVDGLVEVALK 176
                                 QQVALADRKMVELAR  SR+SNG    E +GLVEVALK
Sbjct: 114 ----------------------QQVALADRKMVELARAASRVSNGGLASEENGLVEVALK 151

Query: 177 GLLSGLEKVMKAADCVRLKTLKGILDVLSTKQSVDFLAGTSILQIQMSIRGTKRVQAY 234
           GLLSGLE+VMKAADC RLKTLKGIL+VLS  Q VDFLA T +  + +   G KR   +
Sbjct: 152 GLLSGLERVMKAADCARLKTLKGILEVLSPLQCVDFLAATLMFHVNLRKWGIKRAGPH 209

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|4539384|emb|CAB37450.1| putative protein [Arabidopsis thaliana] gi|7268659|emb|CAB78867.1| putative protein [Arabidopsis thaliana]

 Score =  247 bits (631), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 130/239 (54%), Positives = 169/239 (70%), Gaps = 11/239 (4%)

Query: 1   MKNQVEEKFAEFFEKWVCQLDDYSQQL-IRISKESSSEAEQQALVSKLTSHYKEYYTVKW 59
           M+N VEEKF EF+E WV QL+ Y  QL I  +  + SE E + L+SKLT+H+K YYT KW
Sbjct: 1   MRNLVEEKFLEFYESWVIQLELYLHQLLIAHNNNTMSETELRHLISKLTTHHKAYYTAKW 60

Query: 60  ALAHEDVLVFYCPVWVSTFEMAYSWVTGWKPSIIFRLVDSLRKTMVPGGGSLAELTEQQL 119
           A   EDVL F+  VW++  E A SW+TGWKPS++FR+VD LRK+ V        L E Q+
Sbjct: 61  AAIREDVLAFFGSVWLNPLENACSWLTGWKPSMVFRMVDRLRKSRVV-------LVEAQV 113

Query: 120 RKIEELRLKIRLEEEKVEREMERQQVALADRKMVELARLTSRLSNGEVDGLVEVALKGLL 179
           +K+EELR+K + +E+K+EREMER QVA+ADRKMVELARL   +  GE   +VE A++GL 
Sbjct: 114 KKLEELRVKTKFDEQKIEREMERYQVAMADRKMVELARLGCHVG-GESVMVVEAAVRGLS 172

Query: 180 SGLEKVMKAADCVRLKTLKGILDVLSTKQSVDFLAGTSILQIQMSIRGTKRVQAYVNTS 238
            GLEK++KAADCVRLKTLKGILD+L+  Q V+FLA  +  Q+Q+   G +R   YV  S
Sbjct: 173 MGLEKMVKAADCVRLKTLKGILDILTPPQCVEFLAAAATFQVQLRRWGNRR--HYVTHS 229

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30684489|ref|NP_193600.2| transcription factor-related protein [Arabidopsis thaliana] gi|28393021|gb|AAO41945.1| unknown protein [Arabidopsis thaliana] gi|28827732|gb|AAO50710.1| unknown protein [Arabidopsis thaliana] gi|332658672|gb|AEE84072.1| transcription factor-related protein [Arabidopsis thaliana]

 Score =  247 bits (631), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 130/239 (54%), Positives = 169/239 (70%), Gaps = 11/239 (4%)

Query: 1   MKNQVEEKFAEFFEKWVCQLDDYSQQL-IRISKESSSEAEQQALVSKLTSHYKEYYTVKW 59
           M+N VEEKF EF+E WV QL+ Y  QL I  +  + SE E + L+SKLT+H+K YYT KW
Sbjct: 4   MRNLVEEKFLEFYESWVIQLELYLHQLLIAHNNNTMSETELRHLISKLTTHHKAYYTAKW 63

Query: 60  ALAHEDVLVFYCPVWVSTFEMAYSWVTGWKPSIIFRLVDSLRKTMVPGGGSLAELTEQQL 119
           A   EDVL F+  VW++  E A SW+TGWKPS++FR+VD LRK+ V        L E Q+
Sbjct: 64  AAIREDVLAFFGSVWLNPLENACSWLTGWKPSMVFRMVDRLRKSRVV-------LVEAQV 116

Query: 120 RKIEELRLKIRLEEEKVEREMERQQVALADRKMVELARLTSRLSNGEVDGLVEVALKGLL 179
           +K+EELR+K + +E+K+EREMER QVA+ADRKMVELARL   +  GE   +VE A++GL 
Sbjct: 117 KKLEELRVKTKFDEQKIEREMERYQVAMADRKMVELARLGCHVG-GESVMVVEAAVRGLS 175

Query: 180 SGLEKVMKAADCVRLKTLKGILDVLSTKQSVDFLAGTSILQIQMSIRGTKRVQAYVNTS 238
            GLEK++KAADCVRLKTLKGILD+L+  Q V+FLA  +  Q+Q+   G +R   YV  S
Sbjct: 176 MGLEKMVKAADCVRLKTLKGILDILTPPQCVEFLAAAATFQVQLRRWGNRR--HYVTHS 232

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356557749|ref|XP_003547173.1| PREDICTED: transcription factor TGA5-like [Glycine max]

 Score =  247 bits (630), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 137/237 (57%), Positives = 180/237 (75%), Gaps = 9/237 (3%)

Query: 1   MKNQVEEKFAEFFEKWVCQLDDYSQQLIRISKESS----SEAEQQALVSKLTSHYKEYYT 56
           MKN V + F EF++KWV +L++   QL+ +SK+ +    +E E Q L+SK+TSH KEYYT
Sbjct: 1   MKNPVAQSFTEFYDKWVWKLEEILHQLLEVSKQRTQVVKTEQELQVLISKVTSHLKEYYT 60

Query: 57  VKWALAHEDVLVFYCPVWVSTFEMAYSWVTGWKPSIIFRLVDSLRKTMVPGGGSLAELTE 116
           VKWA AHEDVLVF+ P W+S  E AY W+TGWKPS++ +L+++L+K    GG  +  +TE
Sbjct: 61  VKWASAHEDVLVFFSPTWLSPLENAYLWMTGWKPSMVLKLLETLKKQAASGGDFV--MTE 118

Query: 117 QQLRKIEELRLKIRLEEEKVEREMERQQVALADRKMVELARLTSRLSN---GEVDGLVEV 173
           +Q RKIEELR + R+EEEKVEREMERQQVA+ADRKMVEL +LT+R  N   G  D + EV
Sbjct: 119 EQARKIEELRKRTRMEEEKVEREMERQQVAMADRKMVELVKLTTRARNGGGGGGDAVAEV 178

Query: 174 ALKGLLSGLEKVMKAADCVRLKTLKGILDVLSTKQSVDFLAGTSILQIQMSIRGTKR 230
           ALKG+L+GLE+VMKA+DCVRLKTLKG+LDVLS  Q VDFLA  + +Q+++   G K+
Sbjct: 179 ALKGVLAGLERVMKASDCVRLKTLKGVLDVLSPMQCVDFLAANTAMQLRLRQWGKKK 235

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356546572|ref|XP_003541699.1| PREDICTED: transcription factor TGA6-like [Glycine max]

 Score =  245 bits (625), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 138/241 (57%), Positives = 180/241 (74%), Gaps = 14/241 (5%)

Query: 1   MKNQVEEKFAEFFEKWVCQLDDYSQQLIRISKESS----SEAEQQALVSKLTSHYKEYYT 56
           MKN V E F +F++KWV +L++   QL+ +SK+ +    +E E Q LVSK+TSH KEYYT
Sbjct: 1   MKNPVAESFTDFYDKWVWKLEEILHQLLEVSKQRTEVVKTEQELQVLVSKVTSHLKEYYT 60

Query: 57  VKWALAHEDVLVFYCPVWVSTFEMAYSWVTGWKPSIIFRLVDSLRKTMVPGGGSLAELTE 116
           +KWA AHE+VLVF+ P W+S  E AY W+TGWKPS++F+L+++L+K     GG    +TE
Sbjct: 61  IKWASAHEEVLVFFSPAWLSPLENAYLWITGWKPSMVFKLLETLKKQ--ASGGDFV-MTE 117

Query: 117 QQLRKIEELRLKIRLEEEKVEREMERQQVALADRKMVELARLTSRLSNG-------EVDG 169
           +Q+RKIEELR + R+EEEKVEREMERQQVA+ADRKMVEL +LT R  N         VD 
Sbjct: 118 EQVRKIEELRKRTRMEEEKVEREMERQQVAMADRKMVELVKLTGRARNNGSGGGGDAVDA 177

Query: 170 LVEVALKGLLSGLEKVMKAADCVRLKTLKGILDVLSTKQSVDFLAGTSILQIQMSIRGTK 229
           +VEVALKG+L+GLE+VMKA+DCVRLKTLKG+LDVLS  Q VDFLA    +Q+++   G K
Sbjct: 178 VVEVALKGVLAGLERVMKASDCVRLKTLKGVLDVLSPMQCVDFLAANIAMQLRLRQWGKK 237

Query: 230 R 230
           +
Sbjct: 238 K 238

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297800196|ref|XP_002867982.1| hypothetical protein ARALYDRAFT_354881 [Arabidopsis lyrata subsp. lyrata] gi|297313818|gb|EFH44241.1| hypothetical protein ARALYDRAFT_354881 [Arabidopsis lyrata subsp. lyrata]

 Score =  240 bits (613), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 127/230 (55%), Positives = 166/230 (72%), Gaps = 8/230 (3%)

Query: 1   MKNQVEEKFAEFFEKWVCQLDDYSQQLIRISKESSSEAEQQALVSKLTSHYKEYYTVKWA 60
           M+N VEEKF EF+E WV QL+ Y  QL+ I+  + SE E +AL+SKLT+H+K YYT KWA
Sbjct: 1   MRNLVEEKFLEFYESWVIQLELYLHQLL-IAHNTMSETELRALISKLTTHHKAYYTAKWA 59

Query: 61  LAHEDVLVFYCPVWVSTFEMAYSWVTGWKPSIIFRLVDSLRKTMVPGGGSLAELTEQQLR 120
              EDVL F+ P+W++  E A  W+TGWKPS +FR+VD LRK       S   L E Q+R
Sbjct: 60  AIGEDVLAFFGPIWLNPLEKACFWLTGWKPSTVFRMVDRLRKY------SRVVLVEAQVR 113

Query: 121 KIEELRLKIRLEEEKVEREMERQQVALADRKMVELARLTSRLSNGEVDGLVEVALKGLLS 180
           K+EELR+K + +E+K+EREMER QVA+ADRKMVELARL   +   E   +VE A++GL +
Sbjct: 114 KLEELRVKTKFDEQKIEREMERYQVAMADRKMVELARLGCHVGG-ESVVVVEAAVRGLAT 172

Query: 181 GLEKVMKAADCVRLKTLKGILDVLSTKQSVDFLAGTSILQIQMSIRGTKR 230
           GLEK++KAADCVRLKTLKGILD+L+  Q V+FLA  +  Q+Q+   G +R
Sbjct: 173 GLEKMVKAADCVRLKTLKGILDILAPPQCVEFLAAAATFQVQLRRWGNRR 222

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	239
TAIR|locus:2124117	232	AT4G18650 "AT4G18650" [Arabido	0.928	0.956	0.476	2.6e-47
TAIR|locus:2016620	225	ZW2 [Arabidopsis thaliana (tax	0.857	0.911	0.28	5.3e-17
TAIR|locus:2024412	230	RAS1 "AT1G09950" [Arabidopsis	0.887	0.921	0.243	2.7e-13
TAIR|locus:2086400	244	AT3G14880 "AT3G14880" [Arabido	0.372	0.364	0.287	2.6e-11
TAIR|locus:2124152	235	AT4G18680 "AT4G18680" [Arabido	0.276	0.280	0.382	1.8e-06
TAIR|locus:2169409	330	OBF5 "AT5G06960" [Arabidopsis	0.761	0.551	0.238	2.9e-06
TAIR|locus:2082234	355	TGA6 "AT3G12250" [Arabidopsis	0.648	0.436	0.25	1.5e-05
TAIR|locus:2169394	330	AHBP-1B "AT5G06950" [Arabidops	0.648	0.469	0.244	3.9e-05
TAIR|locus:2152390	291	DOG1 "AT5G45830" [Arabidopsis	0.723	0.594	0.251	0.00029
UNIPROTKB|Q9SQK1	325	TGA2.2 "BZIP transcription fac	0.686	0.504	0.234	0.00047

TAIR|locus:2124117 AT4G18650 "AT4G18650" [Arabidopsis thaliana (taxid:3702)]

 Score = 495 (179.3 bits), Expect = 2.6e-47, P = 2.6e-47
 Identities = 110/231 (47%), Positives = 139/231 (60%)

Query:     1 MKNQVEEKFAEFFEKWVCQLDDYSQQL-IRISKXXXXXXXXXXLVSKLTSHYKEYYTVKW 59
             M+N VEEKF EF+E WV QL+ Y  QL I  +           L+SKLT+H+K YYT KW
Sbjct:     4 MRNLVEEKFLEFYESWVIQLELYLHQLLIAHNNNTMSETELRHLISKLTTHHKAYYTAKW 63

Query:    60 ALAHEDVLVFYCPVWVSTFEMAYSWVTGWKPSIIFRLVDSLRKTMVPGGGSLAELTEQQX 119
             A   EDVL F+  VW++  E A SW+TGWKPS++FR+VD LRK+ V        L E Q 
Sbjct:    64 AAIREDVLAFFGSVWLNPLENACSWLTGWKPSMVFRMVDRLRKSRVV-------LVEAQV 116

Query:   120 XXXXXXXXXXXXXXXXXXXXXXXQQVALADRKMVELARLTSRLSNGEVDGLVEVALKGLL 179
                                     QVA+ADRKMVELARL   +  GE   +VE A++GL 
Sbjct:   117 KKLEELRVKTKFDEQKIEREMERYQVAMADRKMVELARLGCHVG-GESVMVVEAAVRGLS 175

Query:   180 SGLEKVMKAADCVRLKTLKGILDVLSTKQSVDFLAGTSILQIQMSIRGTKR 230
              GLEK++KAADCVRLKTLKGILD+L+  Q V+FLA  +  Q+Q+   G +R
Sbjct:   176 MGLEKMVKAADCVRLKTLKGILDILTPPQCVEFLAAAATFQVQLRRWGNRR 226

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2016620 ZW2 [Arabidopsis thaliana (taxid:3702)]

 Score = 209 (78.6 bits), Expect = 5.3e-17, P = 5.3e-17
 Identities = 63/225 (28%), Positives = 105/225 (46%)

Query:     7 EKFAEFFEKWVCQLDDYSQQLIRISKXXXXXX--XXXXLVSKLTSHYKEYY---TVKWAL 61
             E FA FF  W+C+   + QQL  ++             LVS   SHY +YY   +V  ++
Sbjct:     8 ETFASFFNDWLCRHRQFVQQLAHLADETTIVTPIEEESLVSNFLSHYLQYYEEKSVAMSV 67

Query:    62 AHEDVLVFYCPVWVSTFEMAYSWVTGWKPSIIFRLVDSLRKTMVPGGGSLAELTEQQXXX 121
             A +D+  F+ P W+S++E    W+ G+KP ++F+L+ +          S+ +LT  Q   
Sbjct:    68 AGDDIYDFFSPPWLSSYEKLILWIGGFKPGMVFKLITT----------SVNDLTSHQIDQ 117

Query:   122 XXXXXXXXXXXXXXXXXXXXXQQVALADRK-MVELARL-TSRLSNGEVDGLVEVALKGLL 179
                                   Q ++ D   MV   R+   RL  GE   + E A++ L 
Sbjct:   118 LESIRLETKRRERDLMRRFALLQQSVGDPLLMVPFRRIGVLRLGEGEQPEM-EDAMEVLK 176

Query:   180 SGLEKVMKAADCVRLKTLKGILDVLSTKQSVDFL--AGTSILQIQ 222
               + K MK AD +R  T+  +++VL+ +QS+  L  AG   L+++
Sbjct:   177 VEMIKAMKNADQLRCVTVGKVVEVLNPRQSIKLLRAAGEFYLRLR 221

GO:0005634 "nucleus" evidence=ISM

TAIR|locus:2024412 RAS1 "AT1G09950" [Arabidopsis thaliana (taxid:3702)]

 Score = 174 (66.3 bits), Expect = 2.7e-13, P = 2.7e-13
 Identities = 57/234 (24%), Positives = 104/234 (44%)

Query:     7 EKFAEFFEKWVCQLDDYSQQLIRISKXXXXXXXXX----XLVSKLTSHYKEYYTVKWA-- 60
             + F  F + W+ +   + +QL+  S               LV++  SH  +YY  K+A  
Sbjct:     8 QSFTIFVDGWLIRHRYFVEQLMCASSLDETNRISLEEQQSLVAQFLSHCLQYYQEKFASV 67

Query:    61 -LAHEDVLVFYCPVWVSTFEMAYSWVTGWKPSIIFRLVDSLRKTMVPGGGSLAELTEQQX 119
              LA ++V  F+CP W +++     WV  +KPS++F+L +           S+A+LT  Q 
Sbjct:    68 SLAGDNVFTFFCPPWFNSYAKLILWVGDFKPSLVFKLTEV----------SVADLTRHQK 117

Query:   120 XXXXXXXXXXXXXXXXXXXXXXXQQVALADRKMVELARLTSRLSNGEVDGL---VEVALK 176
                                     Q ++AD  ++  AR    +  G VDG    +E A++
Sbjct:   118 DRISSLKSETRRKEREVMRDFALVQQSVADPPVMLAARRVGAV--GMVDGEETDLEEAME 175

Query:   177 GLLSGLEKVMKAADCVRLKTLKGILDVLSTKQSVDFLAGTSILQIQMSIRGTKR 230
              L +G+   M  AD +R  T+  ++++L+  Q++  L     L +++  R  +R
Sbjct:   176 VLKAGMAAAMNNADQLRCSTVGKVVEILTPPQAIKVLRTIGQLHLRLRDRDQER 229

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2086400 AT3G14880 "AT3G14880" [Arabidopsis thaliana (taxid:3702)]

 Score = 135 (52.6 bits), Expect = 2.6e-11, Sum P(2) = 2.6e-11
 Identities = 27/94 (28%), Positives = 44/94 (46%)

Query:     9 FAEFFEKWVCQLDDY-----SQQLIRISKXXXXXXXXXXLVSKLTSHYKEYYTVKWALAH 63
             F +F + W+ QL ++     S Q    +            V ++  H++EY+  KWA   
Sbjct:    10 FKKFQQSWIEQLRNHLNHLRSAQNHHRNSATGDEERLREAVDRVMEHFREYHRAKWAATD 69

Query:    64 EDVLVFYCPVWVSTFEMAYSWVTGWKPSIIFRLV 97
             +DV+      W S  E +  WV GW+P+ +F LV
Sbjct:    70 KDVIEVMASPWASALERSLQWVGGWRPTTLFHLV 103

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0080167 "response to karrikin" evidence=IEP

TAIR|locus:2124152 AT4G18680 "AT4G18680" [Arabidopsis thaliana (taxid:3702)]

 Score = 90 (36.7 bits), Expect = 1.8e-06, Sum P(2) = 1.8e-06
 Identities = 26/68 (38%), Positives = 40/68 (58%)

Query:   168 DGLVEVALKGLLSGLEKVMKAADCVRLKTLKGILDVLSTKQSVDFLAGTSILQIQMSIRG 227
             D  VE AL     G+  ++  AD +R +TL+ I+DV++  Q+V+FL     LQ+ +  RG
Sbjct:   161 DVAVEDALDKHEEGMAVLLAEADKLRFETLRKIVDVVTPLQAVEFLLAGKRLQLSLHDRG 220

Query:   228 TKRVQAYV 235
               RV+A V
Sbjct:   221 --RVRADV 226

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2169409 OBF5 "AT5G06960" [Arabidopsis thaliana (taxid:3702)]

 Score = 128 (50.1 bits), Expect = 2.9e-06, P = 2.9e-06
 Identities = 48/201 (23%), Positives = 84/201 (41%)

Query:    13 FEKWVCQLDDYSQQLIRISKXXXXXXXXXXL---VSKLTSHYKEYYTVKWALAHEDVLVF 69
             + +W    +D ++Q+  +S           L   V  + +HY+E Y +K   A  DV   
Sbjct:   118 YRRWQ---EDKNRQMKELSSAIDSHATDSELRIIVDGVIAHYEELYRIKGNAAKSDVFHL 174

Query:    70 YCPVWVSTFEMAYSWVTGWKPSIIFRLVDSLRKTMVPGGGSLAELTEQQXXXXXXXXXXX 129
                +W +  E  + W+ G++ S + +L+ S           L  LTEQQ           
Sbjct:   175 LSGMWKTPAERCFLWLGGFRSSELLKLIAS----------QLEPLTEQQSLDINNLQQSS 224

Query:   130 XXXXXXXXXXXXXQQVALADRKMVELARLTSRLSNGEVDGLVEVALK-GLLSGLEKVMKA 188
                           Q +LAD   +    L S  S      + ++A+  G L  LE  ++ 
Sbjct:   225 QQAEDALSQGMDNLQQSLADT--LSSGTLGSSSSGNVASYMGQMAMAMGKLGTLEGFIRQ 282

Query:   189 ADCVRLKTLKGILDVLSTKQS 209
             AD +RL+T + ++ +L+T+QS
Sbjct:   283 ADNLRLQTYQQMVRLLTTRQS 303

GO:0003677 "DNA binding" evidence=ISS;IDA;NAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0042802 "identical protein binding" evidence=IPI

GO:0009410 "response to xenobiotic stimulus" evidence=IGI;RCA

GO:0000278 "mitotic cell cycle" evidence=RCA

GO:0000303 "response to superoxide" evidence=RCA

GO:0006396 "RNA processing" evidence=RCA

GO:0008219 "cell death" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0009743 "response to carbohydrate stimulus" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0048522 "positive regulation of cellular process" evidence=RCA

GO:0009814 "defense response, incompatible interaction" evidence=TAS

TAIR|locus:2082234 TGA6 "AT3G12250" [Arabidopsis thaliana (taxid:3702)]

 Score = 123 (48.4 bits), Expect = 1.5e-05, P = 1.5e-05
 Identities = 42/168 (25%), Positives = 74/168 (44%)

Query:    43 LVSKLTSHYKEYYTVKWALAHEDVLVFYCPVWVSTFEMAYSWVTGWKPSIIFRLVDSLRK 102
             +V  + +HY+E + +K   A  DV      +W +  E  + W+ G++ S + +L+     
Sbjct:   173 IVDGVMAHYEELFRIKSNAAKNDVFHLLSGMWKTPAERCFLWLGGFRSSELLKLL----- 227

Query:   103 TMVPGGGSLAELTEQQXXXXXXXXXXXXXXXXXXXXXXXXQQVALADRKMVELARLTSRL 162
                     L  +TE+Q                         Q +LAD   +    L S  
Sbjct:   228 -----ANQLEPMTERQVMGINSLQQTSQQAEDALSQGMESLQQSLADT--LSSGTLGSSS 280

Query:   163 SNGEVDGLVEVALK-GLLSGLEKVMKAADCVRLKTLKGILDVLSTKQS 209
             S+     + ++A+  G L  LE  ++ AD +RL+TL+ +L VL+T+QS
Sbjct:   281 SDNVASYMGQMAMAMGQLGTLEGFIRQADNLRLQTLQQMLRVLTTRQS 328

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IDA;IMP

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0009627 "systemic acquired resistance" evidence=IPI

GO:0005515 "protein binding" evidence=IPI

GO:0009410 "response to xenobiotic stimulus" evidence=IGI;RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

TAIR|locus:2169394 AHBP-1B "AT5G06950" [Arabidopsis thaliana (taxid:3702)]

 Score = 119 (46.9 bits), Expect = 3.9e-05, P = 3.9e-05
 Identities = 41/168 (24%), Positives = 73/168 (43%)

Query:    43 LVSKLTSHYKEYYTVKWALAHEDVLVFYCPVWVSTFEMAYSWVTGWKPSIIFRLVDSLRK 102
             +V  + +HY+E + +K   A  DV      +W +  E  + W+ G++ S + +L+     
Sbjct:   148 IVDGVMAHYEELFRIKSNAAKNDVFHLLSGMWKTPAERCFLWLGGFRSSELLKLL----- 202

Query:   103 TMVPGGGSLAELTEQQXXXXXXXXXXXXXXXXXXXXXXXXQQVALADRKMVELARLTSRL 162
                     L  +TE+Q                         Q +LAD   +    L S  
Sbjct:   203 -----ANQLEPMTERQLMGINNLQQTSQQAEDALSQGMESLQQSLADT--LSSGTLGSSS 255

Query:   163 SNGEVDGLVEVALK-GLLSGLEKVMKAADCVRLKTLKGILDVLSTKQS 209
             S      + ++A+  G L  LE  ++ AD +RL+TL+ ++ VL+T+QS
Sbjct:   256 SGNVASYMGQMAMAMGKLGTLEGFIRQADNLRLQTLQQMIRVLTTRQS 303

GO:0003677 "DNA binding" evidence=ISS;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;IDA;TAS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA;IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA;TAS

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IGI

GO:0009410 "response to xenobiotic stimulus" evidence=IGI;RCA

GO:0007062 "sister chromatid cohesion" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0031048 "chromatin silencing by small RNA" evidence=RCA

GO:0045132 "meiotic chromosome segregation" evidence=RCA

GO:0048522 "positive regulation of cellular process" evidence=RCA

TAIR|locus:2152390 DOG1 "AT5G45830" [Arabidopsis thaliana (taxid:3702)]

 Score = 111 (44.1 bits), Expect = 0.00029, P = 0.00029
 Identities = 46/183 (25%), Positives = 75/183 (40%)

Query:    54 YYTVKWALAHEDVLVFYCPVWVSTF-EMAYSWVTGWKPSI----IFRLVDSLRKTMVPGG 108
             YY   W    E+ L++      S+F  + Y+ + G +  I      R +D    +   GG
Sbjct:    77 YYAPTWNSPLENALIWMGGCRPSSFFRLVYA-LCGSQTEIRVTQFLRNIDGYESSGGGGG 135

Query:   109 GSLAELTEQQXXXXXXXXXXXXXXXXXXXXXXXXQQVALADRKMVELARLTSRLSN-GEV 167
              SL++L+ +Q                         Q   AD   + +A +   + N GE 
Sbjct:   136 ASLSDLSAEQLAKINVLHVKIIDEEEKMTKKVSSLQEDAAD---IPIATVAYEMENVGEP 192

Query:   168 DGLVEVALKGLLSGLEKVMKAADCVRLKTLKGILDVLSTKQSVDFLAGTSILQIQMSIRG 227
             + +V+ AL      + +++  AD +R+ TL  IL +LS  Q  DFL     L + M   G
Sbjct:   193 NVVVDQALDKQEEAMARLLVEADNLRVDTLAKILGILSPVQGADFLLAGKKLHLSMHEWG 252

Query:   228 TKR 230
             T R
Sbjct:   253 TMR 255

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:2000033 "regulation of seed dormancy process" evidence=IMP

GO:0009738 "abscisic acid mediated signaling pathway" evidence=IMP

GO:0010162 "seed dormancy process" evidence=IMP

GO:0010182 "sugar mediated signaling pathway" evidence=IMP

UNIPROTKB|Q9SQK1 TGA2.2 "BZIP transcription factor" [Nicotiana tabacum (taxid:4097)]

 Score = 110 (43.8 bits), Expect = 0.00047, P = 0.00047
 Identities = 41/175 (23%), Positives = 73/175 (41%)

Query:    43 LVSKLTSHYKEYYTVKWALAHEDVLVFYCPVWVSTFEMAYSWVTGWKPSIIFRLVDSLRK 102
             +V  + +HY + + +K   A  DV      +W +  E  + W+ G++ S + +L+ +   
Sbjct:   143 IVDGILAHYDDIFRIKGDAAKSDVFHILSGMWKTPAERCFLWLGGFRSSELLKLLIN--- 199

Query:   103 TMVPGGGSLAELTEQQXXXXXXXXXXXXXXXXXXXXXXXXQQVALADRKMVELARLTSRL 162
                     L  LTEQQ                         Q +LA+     L   +S  
Sbjct:   200 -------QLEPLTEQQLLAINNLQQSSQQAEDALSQGMEALQQSLAETLAGSLGPSSSSG 252

Query:   163 SNGEVDGLVEVALKGLLSGLEKVMKAADCVRLKTLKGILDVLSTKQSVDFLAGTS 217
             +     G + +A+ G L  LE  ++ AD +R +TL+ +  +L+T+QS   L   S
Sbjct:   253 NVANYMGQMAMAM-GKLGTLEGFIRQADNLRQQTLQQMHRILTTRQSARALLAIS 306

GO:0005515 "protein binding" evidence=IPI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00035859001 SubName- Full=Chromosome chr10 scaffold_81, whole genome shotgun sequence; (211 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	239
pfam14144	79	pfam14144, DOG1, Seed dormancy control	6e-18

>gnl|CDD|206313 pfam14144, DOG1, Seed dormancy control

 Score = 75.3 bits (186), Expect = 6e-18
 Identities = 23/69 (33%), Positives = 40/69 (57%)

Query: 32  KESSSEAEQQALVSKLTSHYKEYYTVKWALAHEDVLVFYCPVWVSTFEMAYSWVTGWKPS 91
              +S+ E ++LV K+ +HY EY+ +K A A  DV      +W +  E  + W+ G++PS
Sbjct: 11  NAHASDDELRSLVDKVLAHYDEYFRLKSAAAKADVFHLLSGMWKTPAERCFLWIGGFRPS 70

Query: 92  IIFRLVDSL 100
            + +L+ SL
Sbjct: 71  ELLKLLYSL 79

This family of plant proteins appears to be a highly specific controller seed dormancy. Length = 79

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	239
PF14144	80	DOG1: Seed dormancy control	100.0
PF13801	125	Metal_resist: Heavy-metal resistance; PDB: 3EPV_C	97.21
COG3678	160	CpxP P pilus assembly/Cpx signaling pathway, perip	96.69
PRK12750	170	cpxP periplasmic repressor CpxP; Reviewed	96.65
PRK10455	161	periplasmic protein; Reviewed	96.07
PRK12751	162	cpxP periplasmic stress adaptor protein CpxP; Revi	95.13
PRK10363	166	cpxP periplasmic repressor CpxP; Reviewed	94.91
PF07813	100	LTXXQ: LTXXQ motif family protein; InterPro: IPR01	92.1

>PF14144 DOG1: Seed dormancy control

Probab=100.00  E-value=4.4e-37  Score=230.92  Aligned_cols=78  Identities=37%  Similarity=0.696  Sum_probs=76.1

Q ss_pred             hhHHHHHHhhhhCC-ChHHHHHHHHHHHHhHHHHHHHHHhhhcccchhhcCCCCCchHHHHHHHhcCCChhHHHHHHHH
Q 046619           22 DYSQQLIRISKESS-SEAEQQALVSKLTSHYKEYYTVKWALAHEDVLVFYCPVWVSTFEMAYSWVTGWKPSIIFRLVDS   99 (239)
Q Consensus        22 ~~~~eLr~al~~~~-~d~~L~~LV~~~~~Hy~~y~~~K~~aA~~DV~~~~s~~W~sp~Er~flWiGG~RPS~~l~Llys   99 (239)
                      |+++|||+|++++. +|.+|+.||+++++||++||++|+.||++|||++|+|+|+||+||||+||||||||++|+||||
T Consensus         1 ~~l~eLr~al~~~~~~~~~L~~lV~~~~~Hy~~y~~~K~~aa~~DV~~~~s~~W~sp~Er~flWiGG~RPS~~~~ll~s   79 (80)
T PF14144_consen    1 RQLNELRAALQSHADSDDELRSLVDKVMSHYDEYYRAKSAAAKADVFHLLSPPWKSPLERCFLWIGGWRPSELFKLLYS   79 (80)
T ss_pred             CcHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHhCCCCCCHHHHHHHHHhcCCHHHHHHHHhc
Confidence            57999999999997 8999999999999999999999999999999999999999999999999999999999999986

>PF13801 Metal_resist: Heavy-metal resistance; PDB: 3EPV_C 2Y3D_A 2Y3H_D 2Y3G_B 2Y3B_A 2Y39_A 3LAY_H

Probab=97.21  E-value=0.0088  Score=45.74  Aligned_cols=85  Identities=25%  Similarity=0.269  Sum_probs=68.2

Q ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcCCCCChhhHHHHHHHHhHHhHHHHHHHHhH
Q 046619          112 AELTEQQLRKIEELRLKIRLEEEKVEREMERQQVALADRKMVELARLTSRLSNGEVDGLVEVALKGLLSGLEKVMKAADC  191 (239)
Q Consensus       112 ~~Ls~~Ql~~i~~Lq~~~~~~E~aLs~~ma~lQ~slad~~~~~~~~~~~~~~g~~~~~~~~~a~~~~l~~L~~~l~~AD~  191 (239)
                      -+||++|..+|..+......+-..+-+.+......+.....           ....+   ..++...++.+...-.+...
T Consensus        40 l~Lt~eQ~~~l~~~~~~~~~~~~~~r~~~~~~r~~l~~ll~-----------~~~~D---~~~i~a~~~~~~~~~~~l~~  105 (125)
T PF13801_consen   40 LNLTPEQQAKLRALMDEFRQEMRALRQELRAARQELRALLA-----------APPPD---EAAIEALLEEIREAQAELRQ  105 (125)
T ss_dssp             S-TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----------CSSS----HHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----------CCCCC---HHHHHHHHHHHHHHHHHHHH
Confidence            36999999999999999999999999999999888877653           11222   44555667777888888888


Q ss_pred             HHHHHHHhhhhcCChHHHH
Q 046619          192 VRLKTLKGILDVLSTKQSV  210 (239)
Q Consensus       192 LR~~TL~~~~~iLt~~QaA  210 (239)
                      .|.+++.++..+|||.|=+
T Consensus       106 ~~~~~~~~~~~~LtpeQR~  124 (125)
T PF13801_consen  106 ERLEHLLEIRAVLTPEQRA  124 (125)
T ss_dssp             HHHHHHHHHHHTT-GGGHH
T ss_pred             HHHHHHHHHHHcCCHHHhC
Confidence            9999999999999999965

>COG3678 CpxP P pilus assembly/Cpx signaling pathway, periplasmic inhibitor/zinc-resistance associated protein [Intracellular trafficking and secretion / Cell motility and secretio / Signal transduction mechanisms / Inorganic ion transport and metabolism]

Probab=96.69  E-value=0.031  Score=47.34  Aligned_cols=87  Identities=20%  Similarity=0.243  Sum_probs=61.2

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcCCCCChhhHHHHHHHHhHHhHHHHHHHHhHH
Q 046619          113 ELTEQQLRKIEELRLKIRLEEEKVEREMERQQVALADRKMVELARLTSRLSNGEVDGLVEVALKGLLSGLEKVMKAADCV  192 (239)
Q Consensus       113 ~Ls~~Ql~~i~~Lq~~~~~~E~aLs~~ma~lQ~slad~~~~~~~~~~~~~~g~~~~~~~~~a~~~~l~~L~~~l~~AD~L  192 (239)
                      +||++|..+|.++...-+   .+..+-+..-...+-+.+.           .++.+   +.++....+.++..-.+.+.+
T Consensus        57 ~lT~~Qrqqi~~i~~~~~---~a~~~~~~~~r~~l~~li~-----------a~~~D---~aka~a~~~~m~~~~~~~~~~  119 (160)
T COG3678          57 DLTRAQRQQIRDLMQAQR---RAQREQLRSKRRALHELIA-----------ADQFD---EAKARAQAEKMENQRQALREL  119 (160)
T ss_pred             cccHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHh-----------cCCcC---HHHHHHHHHHHHHHHHHHHHH
Confidence            699999999999887766   3333333333333333322           11223   446667888899999999999


Q ss_pred             HHHHHHhhhhcCChHHHHHHHHHH
Q 046619          193 RLKTLKGILDVLSTKQSVDFLAGT  216 (239)
Q Consensus       193 R~~TL~~~~~iLt~~QaA~fL~A~  216 (239)
                      |.++-.++..||||.|.+.|=--.
T Consensus       120 r~k~~~~m~~vLTPEQr~~l~~~~  143 (160)
T COG3678         120 RVKSDNQMYQVLTPEQRAKLQELL  143 (160)
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHH
Confidence            999999999999999997664433

>PRK12750 cpxP periplasmic repressor CpxP; Reviewed

Probab=96.65  E-value=0.11  Score=44.31  Aligned_cols=101  Identities=18%  Similarity=0.200  Sum_probs=60.2

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHhhhHHHHHHHHHhhcCCCCChhhHHHHHHHHhHHhHHH
Q 046619          113 ELTEQQLRKIEELRLKIRLEEEK--------VEREMERQQVALADRKMVELARLTSRLSNGEVDGLVEVALKGLLSGLEK  184 (239)
Q Consensus       113 ~Ls~~Ql~~i~~Lq~~~~~~E~a--------Ls~~ma~lQ~slad~~~~~~~~~~~~~~g~~~~~~~~~a~~~~l~~L~~  184 (239)
                      +||++|...|..++...+.+=.+        ....|....+.+.+.+.           .+..+   +.++....+.+..
T Consensus        52 ~LTdeQk~qik~i~~~~r~~~k~~~~~~r~~~~~~m~a~~~~~~~Ll~-----------a~~FD---eaavral~~~~~~  117 (170)
T PRK12750         52 DLTDAQKEQLKEMREANRAEMKAKYSGNREQSHAEMKAHHAKVQALVL-----------ADDFD---EAAANDLAKQMVE  117 (170)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHh-----------cCCCC---HHHHHHHHHHHHH
Confidence            59999999999998877765444        23334434433333332           11223   2222222222222


Q ss_pred             HHHHHhHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHHHhhhc
Q 046619          185 VMKAADCVRLKTLKGILDVLSTKQSVDFLAGTSILQIQMSIRG  227 (239)
Q Consensus       185 ~l~~AD~LR~~TL~~~~~iLt~~QaA~fL~A~~e~~~~lr~~g  227 (239)
                      .-.+.---|.++.++++.||||-|=+.|-.-..+.....++-+
T Consensus       118 ~~~e~~v~~~~~~~~~~~vLTpEQRak~~e~~~~r~~~~~~~~  160 (170)
T PRK12750        118 KQVERRVKMLEKRHQMLSILTPEQKAKFQELQQERMQECQDKM  160 (170)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            2222223467899999999999999999888666666665554

>PRK10455 periplasmic protein; Reviewed

Probab=96.07  E-value=0.076  Score=44.89  Aligned_cols=84  Identities=20%  Similarity=0.222  Sum_probs=52.5

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhHHHHHHHHHhhcCCCCChhhHHHHHHHHhHHhHHHHHHHHhH
Q 046619          113 ELTEQQLRKIEELRLKIRLEEEKVE-REMERQQVALADRKMVELARLTSRLSNGEVDGLVEVALKGLLSGLEKVMKAADC  191 (239)
Q Consensus       113 ~Ls~~Ql~~i~~Lq~~~~~~E~aLs-~~ma~lQ~slad~~~~~~~~~~~~~~g~~~~~~~~~a~~~~l~~L~~~l~~AD~  191 (239)
                      +||++|...|..|.+..+..-...+ ++...++.    .+.           .+..+   +.++...++.+...-.+.-.
T Consensus        56 ~LT~~Qrqqir~im~~~r~~~~~~~~~~r~~l~~----li~-----------ad~FD---eaavra~~~k~~~~~~~~~~  117 (161)
T PRK10455         56 NLTDAQKQQIRDIMKAQRDQMKRPPLEERRAMHD----IIA-----------SDTFD---KAKAEAQITKMEAQRKARML  117 (161)
T ss_pred             CCCHHHHHHHHHHHHHHHHhhccccHHHHHHHHH----HHc-----------cCccC---HHHHHHHHHHHHHHHHHHHH
Confidence            5999999999999877666533322 22222221    111           11222   33444445555555555555


Q ss_pred             HHHHHHHhhhhcCChHHHHHHHH
Q 046619          192 VRLKTLKGILDVLSTKQSVDFLA  214 (239)
Q Consensus       192 LR~~TL~~~~~iLt~~QaA~fL~  214 (239)
                      .|.++-.+|..||||-|-+.|=-
T Consensus       118 ~~~~~~~qiy~vLTPEQr~q~~~  140 (161)
T PRK10455        118 AHMETQNKIYNVLTPEQKKQFNA  140 (161)
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHH
Confidence            78899999999999999998753

>PRK12751 cpxP periplasmic stress adaptor protein CpxP; Reviewed

Probab=95.13  E-value=0.46  Score=40.33  Aligned_cols=95  Identities=14%  Similarity=0.151  Sum_probs=58.2

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhHHHHHHHHHhhcCCCCChhhHHHHHHHHhHHhHHHHHHHHhH
Q 046619          113 ELTEQQLRKIEELRLKIRLEEEKV-EREMERQQVALADRKMVELARLTSRLSNGEVDGLVEVALKGLLSGLEKVMKAADC  191 (239)
Q Consensus       113 ~Ls~~Ql~~i~~Lq~~~~~~E~aL-s~~ma~lQ~slad~~~~~~~~~~~~~~g~~~~~~~~~a~~~~l~~L~~~l~~AD~  191 (239)
                      +||++|...|-.+....+...... -.+++.++..+.               .+..+   +.++...++.+...-..---
T Consensus        56 ~LTd~QR~qmr~im~~~r~~~~~~~~~~~~~m~~Li~---------------Ad~FD---eaAvra~~~kma~~~~e~~v  117 (162)
T PRK12751         56 NLTEQQRQQMRDLMRQSHQSQPRLDLEDREAMHKLIT---------------ADKFD---EAAVRAQAEKMSQNQIERHV  117 (162)
T ss_pred             CCCHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHh---------------cCCCC---HHHHHHHHHHHHHHHHHHHH
Confidence            599999999999988877753211 112222222111               12233   33333444444444444444


Q ss_pred             HHHHHHHhhhhcCChHHHHHHHHHHHHHHHHHhh
Q 046619          192 VRLKTLKGILDVLSTKQSVDFLAGTSILQIQMSI  225 (239)
Q Consensus       192 LR~~TL~~~~~iLt~~QaA~fL~A~~e~~~~lr~  225 (239)
                      -+.++..+++.+|||-|-+.|---.-+-...++.
T Consensus       118 ~~~~~~~qmy~lLTPEQra~l~~~~e~r~~~~~~  151 (162)
T PRK12751        118 EMAKVRNQMYNLLTPEQKEALNKKHQERIEKLQQ  151 (162)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHh
Confidence            6789999999999999999997766665555554

>PRK10363 cpxP periplasmic repressor CpxP; Reviewed

Probab=94.91  E-value=0.24  Score=42.21  Aligned_cols=83  Identities=22%  Similarity=0.227  Sum_probs=50.9

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhHHHHHHHHHhhcCCCCChhhHHHHHHHHhHHhHHHHHHHHhH
Q 046619          113 ELTEQQLRKIEELRLKIRLEEEKVER-EMERQQVALADRKMVELARLTSRLSNGEVDGLVEVALKGLLSGLEKVMKAADC  191 (239)
Q Consensus       113 ~Ls~~Ql~~i~~Lq~~~~~~E~aLs~-~ma~lQ~slad~~~~~~~~~~~~~~g~~~~~~~~~a~~~~l~~L~~~l~~AD~  191 (239)
                      +||++|...|.+|.+.-+.+.+.++. +++.++    +.+.           .++.+   +.|+...++.+..-=.+.-=
T Consensus        50 dLTdaQRqQmRdLm~~~r~~~~~~~~~er~amh----~LI~-----------ad~FD---Eaavra~a~kma~~~~e~~V  111 (166)
T PRK10363         50 SLTEHQRQQMRDLMQQARHEQPPVNVSEMETMH----RLVT-----------AENFD---ENAVRAQAEKMAQEQVARQV  111 (166)
T ss_pred             CCCHHHHHHHHHHHHHHHhcccccCHHHHHHHH----HHHh-----------cCCCC---HHHHHHHHHHHHHHHHHHHH
Confidence            59999999999999888876554432 222222    1111           12233   33333333433333333333


Q ss_pred             HHHHHHHhhhhcCChHHHHHHH
Q 046619          192 VRLKTLKGILDVLSTKQSVDFL  213 (239)
Q Consensus       192 LR~~TL~~~~~iLt~~QaA~fL  213 (239)
                      -|.++-++|..||||-|-+.|=
T Consensus       112 em~k~~nqmy~lLTPEQKaq~~  133 (166)
T PRK10363        112 EMAKVRNQMYRLLTPEQQAVLN  133 (166)
T ss_pred             HHHHHHHHHHHhCCHHHHHHHH
Confidence            5678999999999999999983

>PF07813 LTXXQ: LTXXQ motif family protein; InterPro: IPR012899 This five residue motif is found in a number of bacterial proteins bearing similarity to the protein CpxP (P32158 from SWISSPROT)

Probab=92.10  E-value=0.79  Score=34.09  Aligned_cols=83  Identities=18%  Similarity=0.241  Sum_probs=45.0

Q ss_pred             CCCCCchHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhhhHHHHHHHHHhhcCCCCChhhHHHHHHHHhHHhHHHH
Q 046619          109 GSLAELTEQQLRKIEELRLKIRLEEEKV---EREMERQQVALADRKMVELARLTSRLSNGEVDGLVEVALKGLLSGLEKV  185 (239)
Q Consensus       109 ~~l~~Ls~~Ql~~i~~Lq~~~~~~E~aL---s~~ma~lQ~slad~~~~~~~~~~~~~~g~~~~~~~~~a~~~~l~~L~~~  185 (239)
                      ..|+ ||++|...+..|....+..-..+   .+.+.++..     +            .  .+..-..++ ...+.+...
T Consensus        11 ~~L~-LT~eQ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-----~------------~--~~~~~~~~~-~~~~~~~~~   69 (100)
T PF07813_consen   11 EELN-LTDEQKAKWRAIRQAMKAKMKPLKAMREQLRALRD-----P------------S--FDEAAPEAL-AAMAEMMEL   69 (100)
T ss_dssp             TTS---THHHHHHHHHHHHHHCTTS------HHHHHHHHH-----S------------S----HHHHHHH-H--HHCHHH
T ss_pred             hhCC-CCHHHHHHHHHHHHHHHHHHHhhcccHHHHHHhcc-----c------------c--CChhHHHHH-HHHHHHHHH
Confidence            3454 99999999999998887776666   222222212     0            0  000001111 111344444


Q ss_pred             HHHHhHHHHHHHHhhhhcCChHHHHHH
Q 046619          186 MKAADCVRLKTLKGILDVLSTKQSVDF  212 (239)
Q Consensus       186 l~~AD~LR~~TL~~~~~iLt~~QaA~f  212 (239)
                      -.+.-..|..+...+..||||-|=+.|
T Consensus        70 ~~~~~~~~~~~~~~~~~vLt~eQk~~~   96 (100)
T PF07813_consen   70 RAEMMEERAKAQHALYAVLTPEQKEKF   96 (100)
T ss_dssp             HHHHHHHHHHHHHHHHTTS-HHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence            445555678999999999999998776

This is a periplasmic protein that aids in combating extracytoplasmic protein-mediated toxicity, and may also be involved in the response to alkaline pH []. Another member of this family, Spy (P77754 from SWISSPROT) is also a periplasmic protein that may be involved in the response to stress []. The homology between CpxP and Spy may indicate that these two proteins are functionally related []. The motif is found repeated twice in many members of this entry. ; GO: 0042597 periplasmic space; PDB: 3ITF_B 3QZC_B 3OEO_D 3O39_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	239
2y39_A	118	Nickel and cobalt resistance protein CNRR; metal b	97.55
3itf_A	145	Periplasmic adaptor protein CPXP; CPXR, CPXA, cpxr	96.04
3oeo_A	138	Spheroplast protein Y; LTXXQ, extracytoplasmic str	94.57
3o39_A	108	Periplasmic protein related to spheroblast format;	94.51
3lay_A	175	Zinc resistance-associated protein; salmonella typ	92.56

>2y39_A Nickel and cobalt resistance protein CNRR; metal binding protein; 1.41A {Cupriavidus metallidurans} PDB: 2y3b_A 2y3d_A 2y3g_A* 2y3h_A 3epv_A*

Probab=97.55  E-value=0.0019  Score=50.88  Aligned_cols=90  Identities=16%  Similarity=0.036  Sum_probs=71.6

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcCCCCChhhHHHHHHHHhHHhHHHHHHHHhHH
Q 046619          113 ELTEQQLRKIEELRLKIRLEEEKVEREMERQQVALADRKMVELARLTSRLSNGEVDGLVEVALKGLLSGLEKVMKAADCV  192 (239)
Q Consensus       113 ~Ls~~Ql~~i~~Lq~~~~~~E~aLs~~ma~lQ~slad~~~~~~~~~~~~~~g~~~~~~~~~a~~~~l~~L~~~l~~AD~L  192 (239)
                      +||++|-..|+.+...-.....+|..+|...-..+++....          ..++++.+..|++..-.       ..-.|
T Consensus        20 ~Lt~~Q~~~leaie~~fa~~r~~le~emRaan~~La~ai~~----------~~~~~p~V~aaid~~h~-------~mG~L   82 (118)
T 2y39_A           20 PLDANEREILELKEDAFAQRRREIETRLRAANGKLADAIAK----------NPAWSPEVEAATQEVER-------AAGDL   82 (118)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------CCSCCHHHHHHHHHHHH-------HHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------ccccCHHHHHHHHHHHH-------HHHHH
Confidence            69999999999999999999999999999999999887642          12355777888743333       44458


Q ss_pred             HHHH---HHhhhhcCChHHHHHHHHHHHHH
Q 046619          193 RLKT---LKGILDVLSTKQSVDFLAGTSIL  219 (239)
Q Consensus       193 R~~T---L~~~~~iLt~~QaA~fL~A~~e~  219 (239)
                      +..|   +-.|..||||-|+..|=-.+.+-
T Consensus        83 QkeTi~HvfeMR~VLtPeQ~~~fd~~vv~a  112 (118)
T 2y39_A           83 QRATLVHVFEMRAGLKPEHRPAYDRVLIDA  112 (118)
T ss_dssp             HHHHHHHHHHHHHHSCGGGHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            8899   77789999999999997666543

>3itf_A Periplasmic adaptor protein CPXP; CPXR, CPXA, cpxrap, CPX-pathway, envelope stress, transduction; HET: MSE; 1.45A {Escherichia coli str} PDB: 3qzc_A

Probab=96.04  E-value=0.041  Score=44.60  Aligned_cols=89  Identities=17%  Similarity=0.160  Sum_probs=60.2

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcCCCCChhhHHHHHHHHhHHhHHHHHHHHhHH
Q 046619          113 ELTEQQLRKIEELRLKIRLEEEKVEREMERQQVALADRKMVELARLTSRLSNGEVDGLVEVALKGLLSGLEKVMKAADCV  192 (239)
Q Consensus       113 ~Ls~~Ql~~i~~Lq~~~~~~E~aLs~~ma~lQ~slad~~~~~~~~~~~~~~g~~~~~~~~~a~~~~l~~L~~~l~~AD~L  192 (239)
                      +||++|...|..|....+.+...++.  +.- +.+-+.+           .++..+   ++++...++.+...-.+.--.
T Consensus        45 ~LTdeQkqqir~L~~~~r~~~~~~~~--~~r-~~l~~Li-----------~ad~fD---eaa~ral~~~~~~~~~e~~v~  107 (145)
T 3itf_A           45 SLTEHQRQQMRDLMQQARHEQPPVNV--SEL-ETMHRLV-----------TAENFD---ENAVRAQAEKMANEQIARQVE  107 (145)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHSCCCCH--HHH-HHHHHHH-----------TCSSCC---HHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHhhhccH--HHH-HHHHHHH-----------ccCCCC---HHHHHHHHHHHHHHHHHHHHH
Confidence            59999999999999988876554421  111 1111111           122333   556666667777777777778


Q ss_pred             HHHHHHhhhhcCChHHHHHHHHHHHH
Q 046619          193 RLKTLKGILDVLSTKQSVDFLAGTSI  218 (239)
Q Consensus       193 R~~TL~~~~~iLt~~QaA~fL~A~~e  218 (239)
                      |.++-.+|..||||-|-+.|---..+
T Consensus       108 r~k~~~qiy~vLTPEQk~ql~e~~~~  133 (145)
T 3itf_A          108 MAKVRNQMYRLLTPEQQAVLNEKHQQ  133 (145)
T ss_dssp             HHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhCCHHHHHHHHHHHHH
Confidence            89999999999999999998764443

>3oeo_A Spheroplast protein Y; LTXXQ, extracytoplasmic stress response-related, signaling P; 2.70A {Escherichia coli}

Probab=94.57  E-value=0.018  Score=46.16  Aligned_cols=93  Identities=22%  Similarity=0.233  Sum_probs=58.2

Q ss_pred             CCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcCCCCChhhHHHHHHHHhHHhHHHHHHH
Q 046619          109 GSLAELTEQQLRKIEELRLKIRLEEEKVEREMERQQVALADRKMVELARLTSRLSNGEVDGLVEVALKGLLSGLEKVMKA  188 (239)
Q Consensus       109 ~~l~~Ls~~Ql~~i~~Lq~~~~~~E~aLs~~ma~lQ~slad~~~~~~~~~~~~~~g~~~~~~~~~a~~~~l~~L~~~l~~  188 (239)
                      ..| +||++|...|..|.+..+..-...   +....+.+.+.+.           .+..+   +.++...++.+...-.+
T Consensus        30 ~~L-~LT~eQ~~qir~i~~~~r~~~~~~---~~~~r~~l~~Li~-----------a~~fD---eaav~al~~~~~~~~~e   91 (138)
T 3oeo_A           30 KDL-NLTDAQKQQIREIMKGQRDQMKRP---PLEERRAMHDIIT-----------SDTFD---KVKAEAQIAKMEEQRKA   91 (138)
T ss_dssp             CCS-CCCTTHHHHHHHHHHHHSSSSCCC---CTTHHHHHHHHHT-----------CSSCC---HHHHHHHHGGGSHHHHH
T ss_pred             hcC-CCCHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhc-----------cCCCC---HHHHHHHHHHHHHHHHH
Confidence            345 499999999999988776543211   1111122222111           11223   44455555666666666


Q ss_pred             HhHHHHHHHHhhhhcCChHHHHHHHHHHHHH
Q 046619          189 ADCVRLKTLKGILDVLSTKQSVDFLAGTSIL  219 (239)
Q Consensus       189 AD~LR~~TL~~~~~iLt~~QaA~fL~A~~e~  219 (239)
                      .-..|.++..+|..||||-|-+.|---..+-
T Consensus        92 ~~~~~~~~~~~~~~vLTPEQr~q~~~~~~kr  122 (138)
T 3oeo_A           92 NMLAHMETQNKIYNILTPEQKKQFNANFEKR  122 (138)
T ss_dssp             HHHHHHHHHHHHHTTSCHHHHHHHHHHTC--
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            6667999999999999999999987765553

>3o39_A Periplasmic protein related to spheroblast format; alpha-helical, structural genomics, montreal-kingston bacter structural genomics initiative; HET: MSE; 2.60A {Escherichia coli}

Probab=94.51  E-value=0.04  Score=42.61  Aligned_cols=84  Identities=21%  Similarity=0.262  Sum_probs=51.2

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcCCCCChhhHHHHHHHHhHHhHHHHHHHHhHH
Q 046619          113 ELTEQQLRKIEELRLKIRLEEEKVEREMERQQVALADRKMVELARLTSRLSNGEVDGLVEVALKGLLSGLEKVMKAADCV  192 (239)
Q Consensus       113 ~Ls~~Ql~~i~~Lq~~~~~~E~aLs~~ma~lQ~slad~~~~~~~~~~~~~~g~~~~~~~~~a~~~~l~~L~~~l~~AD~L  192 (239)
                      +||++|...|-.|....+.+-+..+.  +.- +.+-+.+.           .+..+   +.++...++.+...-.+.---
T Consensus        17 ~LTd~Qk~qir~L~~~~r~~~~~~~~--~~r-~~m~~Li~-----------ad~FD---Eaaar~l~~~~~~~~~e~~v~   79 (108)
T 3o39_A           17 NLTDAQKQQIREIMKGQRDQMKRPPL--EER-RAMHDIIA-----------SDTFD---KAKAEAQIAKMEEQRKANMLA   79 (108)
T ss_dssp             CCCHHHHHHHHHHHHTTTTSCCCCCH--HHH-HHHHHHHS-----------SSSCC---HHHHHHHHHHTHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHhcccccH--HHH-HHHHHHhc-----------cCCCC---HHHHHHHHHHHHHHHHHHHHH
Confidence            69999999999999887766432221  111 11111110           12233   344444444444444444456


Q ss_pred             HHHHHHhhhhcCChHHHHHHH
Q 046619          193 RLKTLKGILDVLSTKQSVDFL  213 (239)
Q Consensus       193 R~~TL~~~~~iLt~~QaA~fL  213 (239)
                      |.++=.+|..||||-|-+.|-
T Consensus        80 ~~r~~~qmy~lLTPEQk~q~~  100 (108)
T 3o39_A           80 HMETQNKIYNILTPEQKKQFN  100 (108)
T ss_dssp             HHHHHHHHHTTSCHHHHHHHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHH
Confidence            778999999999999998864

>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}

Probab=92.56  E-value=1.3  Score=36.80  Aligned_cols=76  Identities=11%  Similarity=0.114  Sum_probs=50.6

Q ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcCCCCChhhHHHHHHHHhHHhHHHHHHHHhH
Q 046619          112 AELTEQQLRKIEELRLKIRLEEEKVEREMERQQVALADRKMVELARLTSRLSNGEVDGLVEVALKGLLSGLEKVMKAADC  191 (239)
Q Consensus       112 ~~Ls~~Ql~~i~~Lq~~~~~~E~aLs~~ma~lQ~slad~~~~~~~~~~~~~~g~~~~~~~~~a~~~~l~~L~~~l~~AD~  191 (239)
                      -+||++|..++..|+++-+.+-.+|.+.+...++.+.+...           .++++   +.++....+++..+=.+-..
T Consensus        66 LnLT~EQq~ql~~I~~e~r~~~~~Lr~ql~akr~EL~aL~~-----------a~~~D---eakI~aL~~Ei~~Lr~qL~~  131 (175)
T 3lay_A           66 SPLTTEQQATAQKIYDDYYTQTSALRQQLISKRYEYNALLT-----------ASSPD---TAKINAVAKEMESLGQKLDE  131 (175)
T ss_dssp             --CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----------SSSCC---HHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----------CCCCC---HHHHHHHHHHHHHHHHHHHH
Confidence            46999999999999999999999999888888887766543           22334   33333334444444445555


Q ss_pred             HHHHHHHhhh
Q 046619          192 VRLKTLKGIL  201 (239)
Q Consensus       192 LR~~TL~~~~  201 (239)
                      .|.+.-.+|.
T Consensus       132 ~R~k~~~em~  141 (175)
T 3lay_A          132 QRVKRDVAMA  141 (175)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            6666666653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00