Citrus Sinensis ID: 046637
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 301 | 2.2.26 [Sep-21-2011] | |||||||
| F4HUK6 | 556 | Probable acyl-activating | yes | no | 0.993 | 0.537 | 0.664 | 1e-114 | |
| Q9SEY5 | 603 | Probable acyl-activating | no | no | 0.953 | 0.475 | 0.610 | 5e-99 | |
| Q9SFW5 | 546 | Probable acyl-activating | no | no | 0.960 | 0.529 | 0.562 | 8e-91 | |
| Q9C8D4 | 572 | Butyrate--CoA ligase AAE1 | no | no | 0.936 | 0.493 | 0.487 | 9e-79 | |
| Q9SS01 | 580 | Benzoate--CoA ligase, per | no | no | 0.936 | 0.486 | 0.474 | 3e-75 | |
| Q9SS00 | 578 | Probable acyl-activating | no | no | 0.936 | 0.487 | 0.474 | 6e-75 | |
| Q8VZF1 | 569 | Acetate/butyrate--CoA lig | no | no | 0.960 | 0.507 | 0.467 | 4e-73 | |
| Q9FFE6 | 552 | Probable acyl-activating | no | no | 0.940 | 0.512 | 0.470 | 6e-68 | |
| Q9FFE9 | 550 | Probable acyl-activating | no | no | 0.936 | 0.512 | 0.479 | 1e-67 | |
| O80658 | 545 | Probable acyl-activating | no | no | 0.953 | 0.526 | 0.450 | 1e-65 |
| >sp|F4HUK6|AAE1_ARATH Probable acyl-activating enzyme 1, peroxisomal OS=Arabidopsis thaliana GN=AAE1 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 412 bits (1060), Expect = e-114, Method: Compositional matrix adjust.
Identities = 200/301 (66%), Positives = 234/301 (77%), Gaps = 2/301 (0%)
Query: 1 MEGMIRCSANYVPLTPISFLERSAVVYRDRPSVVYGDVQYTWKETHQRCVKLASGLAHLG 60
MEG I+ ANYVPLTPISFL+RSAVVY DR S+VYG V+YTW++T RCV++AS L+ LG
Sbjct: 3 MEGTIKSPANYVPLTPISFLDRSAVVYADRVSIVYGSVKYTWRQTRDRCVRIASALSQLG 62
Query: 61 ISPGDVVAALAPNVPAMYELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQ 120
IS GDVV+ LAPNVPAM ELHFGVPMAGA+LCTLN RHDS++V+VLLRHS K+IF D+Q
Sbjct: 63 ISTGDVVSVLAPNVPAMVELHFGVPMAGALLCTLNIRHDSSLVAVLLRHSGTKVIFADHQ 122
Query: 121 LLPIAQGAFEILSKTSAKLPLLVLVPE-CGEPVSTVASSSGNLEYESLLAIGKLR-EVRR 178
L IA+GA EILS K+P+LVL+PE + VS S +EYE ++A+GK EV R
Sbjct: 123 FLQIAEGACEILSNKGDKVPILVLIPEPLTQSVSRKKRSEEMMEYEDVVAMGKSDFEVIR 182
Query: 179 PKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPTYLWCVPMFHCNG 238
P DECD I++NYTSGTTSSPKGV+ SHRGAYLNSLAA L NEM PTYLW PMFHCNG
Sbjct: 183 PTDECDAISVNYTSGTTSSPKGVVYSHRGAYLNSLAAVLLNEMHSSPTYLWTNPMFHCNG 242
Query: 239 WCLTWAVAAQGGTNVCQRTVNAKEIFDNITRHKVTHFGGAPTVLNMIANAPPVFENRFRG 298
WCL W V A GGTN+C R V AK IFDNI++HKVTH GGAPT+LNMI NAP + G
Sbjct: 243 WCLLWGVTAIGGTNICLRNVTAKAIFDNISQHKVTHMGGAPTILNMIINAPESEQKPLPG 302
Query: 299 R 299
+
Sbjct: 303 K 303
|
May act as an acid--thiol ligase that activates carboxylic acids by forming acyl-CoAs. Arabidopsis thaliana (taxid: 3702) EC: 6EC: .EC: 2EC: .EC: 1EC: .EC: - |
| >sp|Q9SEY5|AAE2_ARATH Probable acyl-activating enzyme 2 OS=Arabidopsis thaliana GN=AAE2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 360 bits (925), Expect = 5e-99, Method: Compositional matrix adjust.
Identities = 182/298 (61%), Positives = 221/298 (74%), Gaps = 11/298 (3%)
Query: 1 MEGMIRCSANYVPLTPISFLERSAVVYRDRPSVVYGDVQYTWKETHQRCVKLASGLAHLG 60
+EG++R AN+ PL+PI+FLERSA VYRDR S+V+G V++TW +T+QRC++LAS L +LG
Sbjct: 48 IEGLLRSPANFSPLSPITFLERSAKVYRDRTSLVFGSVKHTWFQTYQRCLRLASALTNLG 107
Query: 61 ISPGDVVAALAPNVPAMYELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQ 120
IS GDVVAALAPNVPAM+ELHF VPMAG +LC LNTR D + +SVLL HSEAKI+FVD+Q
Sbjct: 108 ISRGDVVAALAPNVPAMHELHFAVPMAGLILCPLNTRLDPSTLSVLLAHSEAKILFVDHQ 167
Query: 121 LLPIAQGAFEILSKTSAKLPLLVLV---------PECGEPVSTVASS-SGNLEYESLLAI 170
LL IA GA ++L+K+ L LV + ST AS S + EYE+LL
Sbjct: 168 LLEIAHGALDLLAKSDKTRKSLKLVLISQSNDDDDSDEDSSSTFASKYSFDYEYETLLKS 227
Query: 171 GKLR-EVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPTYLW 229
G E+ +P+ E DPI++NYTSGTTS PKGV+ SHRGAYLNSLA ++M + P YLW
Sbjct: 228 GDSEFEIIKPRCEWDPISINYTSGTTSRPKGVVYSHRGAYLNSLATVFLHQMSVYPVYLW 287
Query: 230 CVPMFHCNGWCLTWAVAAQGGTNVCQRTVNAKEIFDNITRHKVTHFGGAPTVLNMIAN 287
VPMFHCNGWCL W VAAQGGTN+C R V+ K IF NI HKVTH GGAPTVLNMI N
Sbjct: 288 TVPMFHCNGWCLVWGVAAQGGTNICLRKVSPKMIFKNIAMHKVTHMGGAPTVLNMIVN 345
|
May act as an acid--thiol ligase that activates carboxylic acids by forming acyl-CoAs. Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: - |
| >sp|Q9SFW5|AEE21_ARATH Probable acyl-activating enzyme 21 OS=Arabidopsis thaliana GN=AEE21 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 333 bits (854), Expect = 8e-91, Method: Compositional matrix adjust.
Identities = 167/297 (56%), Positives = 208/297 (70%), Gaps = 8/297 (2%)
Query: 1 MEGMIRCSANYVPLTPISFLERSAVVYRDRPSVVYGDVQYTWKETHQRCVKLASGLAHLG 60
MEG +RCSANYVPL+PISFLER+AVV+ R SVVYGD+QYTW +T RCV+LAS L+ LG
Sbjct: 1 MEGTMRCSANYVPLSPISFLERAAVVFGSRTSVVYGDIQYTWHQTRDRCVRLASALSDLG 60
Query: 61 ISPGDVVAALAPNVPAMYELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQ 120
+S DVVAALAPNVPA+ EL+FG PMAGAVLC LNT DS M+++ L ++ K+ FVD +
Sbjct: 61 LSRHDVVAALAPNVPALCELYFGAPMAGAVLCVLNTTFDSQMLAMALEKTKPKVFFVDSE 120
Query: 121 LLPIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVASSSGNLEYESLLAIGKLR-EVRRP 179
L +A+ + +LS K PL++ + E S +YE L+ G + RP
Sbjct: 121 FLSVAEESLSLLSNIEEK-PLIITITE------NPTEQSKYEQYEDFLSTGNPNFKPIRP 173
Query: 180 KDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPTYLWCVPMFHCNGW 239
DECDPIALN+TSGTTS+PK V+ SHRGAYLN+ A + NEM MP YL VPM+HC+GW
Sbjct: 174 VDECDPIALNFTSGTTSTPKCVVYSHRGAYLNATAVGVMNEMKPMPVYLCTVPMYHCSGW 233
Query: 240 CLTWAVAAQGGTNVCQRTVNAKEIFDNITRHKVTHFGGAPTVLNMIANAPPVFENRF 296
C W V A GG VC R VN + IFD+I +HKVT+FGG+P VLNMIANA + F
Sbjct: 234 CYIWTVTAFGGVIVCLREVNDEVIFDSIVKHKVTNFGGSPPVLNMIANARDSVKKSF 290
|
May act as an acid--thiol ligase that activates carboxylic acids by forming acyl-CoAs. Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: - |
| >sp|Q9C8D4|AAE11_ARATH Butyrate--CoA ligase AAE11, peroxisomal OS=Arabidopsis thaliana GN=AAE11 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 293 bits (751), Expect = 9e-79, Method: Compositional matrix adjust.
Identities = 142/291 (48%), Positives = 197/291 (67%), Gaps = 9/291 (3%)
Query: 1 MEGMIRCSANYVPLTPISFLERSAVVYRDRPSVVYGDVQYTWKETHQRCVKLASGLAHLG 60
M+ ++ C AN VPLTPI+FL+R++ Y +R S++YG ++TW +T+ RC +LA+ L L
Sbjct: 1 MDNLVLCEANNVPLTPITFLKRASECYPNRTSIIYGQTRFTWPQTYDRCCRLAASLLSLN 60
Query: 61 ISPGDVVAALAPNVPAMYELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQ 120
I+ DVV+ LAPNVPAMYE+HF VPM GAVL +NTR D+ ++++LRH+E KI+FVDY+
Sbjct: 61 ITRNDVVSILAPNVPAMYEMHFSVPMTGAVLNPINTRLDAKTIAIILRHAEPKILFVDYE 120
Query: 121 LLPIAQGAFEIL-SKTSAKLPLLVLVPECGEPVSTVASSSGNLEYESLLAIGK-----LR 174
P+ Q ++ + S P ++L+ E ST S L+YE L+ G+
Sbjct: 121 FAPLIQEVLRLIPTYQSQPHPRIILINEID---STTKPFSKELDYEGLIRKGEPTPSSSA 177
Query: 175 EVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPTYLWCVPMF 234
+ R +E DPI+LNYTSGTT+ PKGV+ SH+GAYL++L++ + EMG+ P YLW +PMF
Sbjct: 178 SMFRVHNEHDPISLNYTSGTTADPKGVVISHQGAYLSALSSIIGWEMGIFPVYLWTLPMF 237
Query: 235 HCNGWCLTWAVAAQGGTNVCQRTVNAKEIFDNITRHKVTHFGGAPTVLNMI 285
HCNGW TW+VAA+GGTNVC R V A EI+ NI H VTH PTV +
Sbjct: 238 HCNGWTHTWSVAARGGTNVCIRHVTAPEIYKNIELHGVTHMSCVPTVFRFL 288
|
Butyrate--CoA ligase that is active in vitro with medium-chain fatty acids, with a preference for hexanoate and octanoate. Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 2 |
| >sp|Q9SS01|AAE20_ARATH Benzoate--CoA ligase, peroxisomal OS=Arabidopsis thaliana GN=AAE20 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 281 bits (720), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 138/291 (47%), Positives = 194/291 (66%), Gaps = 9/291 (3%)
Query: 1 MEGMIRCSANYVPLTPISFLERSAVVYRDRPSVVYGDVQYTWKETHQRCVKLASGLAHLG 60
M+ + C AN VPLTP++FL+R++ Y +R S++YG ++TW +T+ RC +LA+ L L
Sbjct: 1 MDDLALCEANNVPLTPMTFLKRASECYPNRTSIIYGKTRFTWPQTYDRCCRLAASLISLN 60
Query: 61 ISPGDVVAALAPNVPAMYELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQ 120
IS DVV+ +APN PA+YE+HF VPMAGAVL +NTR D+ ++ +LRH++ KI+F+D
Sbjct: 61 ISKNDVVSVMAPNTPALYEMHFAVPMAGAVLNPINTRLDATSIAAILRHAKPKILFLDRS 120
Query: 121 LLPIAQGAFEILSKTSAKLPL-LVLVPECGEPVSTVASSSGNLEYESLLAIGK-----LR 174
+A+ + +LS + L L ++ + E P +S L+YE L+ G+ +
Sbjct: 121 FEALARESLHLLSSEDSNLNLPVIFIHENDFPKR---ASFEELDYECLIQRGEPTPSMVA 177
Query: 175 EVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPTYLWCVPMF 234
+ R +DE DPI+LNYTSGTT+ PKGV+ SHRGAYL +L+A + EMG P YLW +PMF
Sbjct: 178 RMFRIQDEHDPISLNYTSGTTADPKGVVISHRGAYLCTLSAIIGWEMGTCPVYLWTLPMF 237
Query: 235 HCNGWCLTWAVAAQGGTNVCQRTVNAKEIFDNITRHKVTHFGGAPTVLNMI 285
HCNGW TW AA+GGT+VC R V A EI+ NI H VTH PTV N++
Sbjct: 238 HCNGWTFTWGTAARGGTSVCMRHVTAPEIYKNIEMHNVTHMCCVPTVFNIL 288
|
Benzoate--CoA ligase involved in benzoyloxyglucosinolate biosynthesis in seeds. Glucosinolates are secondary metabolites involved in pathogen and insect defense of cruciferous plants. Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 2 EC: 5 |
| >sp|Q9SS00|AAE12_ARATH Probable acyl-activating enzyme 12, peroxisomal OS=Arabidopsis thaliana GN=AAE12 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 280 bits (717), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 138/291 (47%), Positives = 192/291 (65%), Gaps = 9/291 (3%)
Query: 1 MEGMIRCSANYVPLTPISFLERSAVVYRDRPSVVYGDVQYTWKETHQRCVKLASGLAHLG 60
M+ + C AN VPLTPI+FL+R++ Y +R S++YG ++TW +T+ RC +LA+ L L
Sbjct: 1 MDNLALCEANNVPLTPITFLKRASECYPNRTSIIYGKTRFTWPQTYDRCCRLAASLISLN 60
Query: 61 ISPGDVVAALAPNVPAMYELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQ 120
I DVV+ +APN PAMYE+HF VPMAGAVL +NTR D+ ++ +LRH++ KI+F+
Sbjct: 61 IGKNDVVSVVAPNTPAMYEMHFAVPMAGAVLNPINTRLDATSIAAILRHAKPKILFIYRS 120
Query: 121 LLPIAQGAFEILSKTSAKLPL-LVLVPECGEPVSTVASSSGNLEYESLLAIGK-----LR 174
P+A+ ++LS + L L ++ + E P + S +YE L+ G+ L
Sbjct: 121 FEPLAREILQLLSSEDSNLNLPVIFIHEIDFPKRVSSEES---DYECLIQRGEPTPLLLA 177
Query: 175 EVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPTYLWCVPMF 234
+ +DE DPI+LNYTSGTT+ PKGV+ SHRGAYL++L+A + EMG P YLW +PMF
Sbjct: 178 RMFCIQDEHDPISLNYTSGTTADPKGVVISHRGAYLSTLSAIIGWEMGTCPVYLWTLPMF 237
Query: 235 HCNGWCLTWAVAAQGGTNVCQRTVNAKEIFDNITRHKVTHFGGAPTVLNMI 285
HCNGW TW AA+GGT+VC R V A EI+ NI H VTH PTV N++
Sbjct: 238 HCNGWTFTWGTAARGGTSVCMRHVTAPEIYKNIEMHNVTHMCCVPTVFNIL 288
|
May act as an acid--thiol ligase that activates carboxylic acids by forming acyl-CoAs. Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: - |
| >sp|Q8VZF1|AEE7_ARATH Acetate/butyrate--CoA ligase AAE7, peroxisomal OS=Arabidopsis thaliana GN=AAE7 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 275 bits (702), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 138/295 (46%), Positives = 190/295 (64%), Gaps = 6/295 (2%)
Query: 1 MEGMIRCSANYVPLTPISFLERSAVVYRDRPSVVYGDVQYTWKETHQRCVKLASGLAHLG 60
++ + + ANY LTP+ FL+R+AVV+ R SV++G +YTW++T+ RC +LAS LA
Sbjct: 9 IDDLPKIPANYTALTPLWFLDRAAVVHPTRKSVIHGSREYTWRQTYDRCRRLASALADRS 68
Query: 61 ISPGDVVAALAPNVPAMYELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQ 120
I PG VA +APN+PAMYE HFGVPM GAVL +N R ++ V+ LL HS++ +I VD +
Sbjct: 69 IGPGSTVAIIAPNIPAMYEAHFGVPMCGAVLNCVNIRLNAPTVAFLLSHSQSSVIMVDQE 128
Query: 121 LLPIAQGAFEILSK---TSAKLPLLVLVPE--CGEPVSTVASSSGNLEYESLLAIGKLR- 174
+A+ + ++ + +S K PLL+++ + C A S G +EYE LA G
Sbjct: 129 FFTLAEDSLRLMEEKAGSSFKRPLLIVIGDHTCAPESLNRALSKGAIEYEDFLATGDPNY 188
Query: 175 EVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPTYLWCVPMF 234
+ P DE IAL YTSGTT+SPKGV+ HRGAY+ +L+ L M YLW +PMF
Sbjct: 189 PWQPPADEWQSIALGYTSGTTASPKGVVLHHRGAYIMALSNPLIWGMQDGAVYLWTLPMF 248
Query: 235 HCNGWCLTWAVAAQGGTNVCQRTVNAKEIFDNITRHKVTHFGGAPTVLNMIANAP 289
HCNGWC W++A GT++C R V AKE++ I ++KVTHF AP VLN I NAP
Sbjct: 249 HCNGWCFPWSLAVLSGTSICLRQVTAKEVYSMIAKYKVTHFCAAPVVLNAIVNAP 303
|
Peroxisomal acetate/butyrate--CoA ligase that is probably involved in the activation of exogenous acetate for entry into the glyoxylate cycle. May play a role to prevent carbon loss from peroxisomes during lipid mobilization. In vitro, is active with both acetate and butyrate. Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 2 |
| >sp|Q9FFE6|AAE5_ARATH Probable acyl-activating enzyme 5, peroxisomal OS=Arabidopsis thaliana GN=AAE5 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 257 bits (657), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 137/291 (47%), Positives = 185/291 (63%), Gaps = 8/291 (2%)
Query: 1 MEGMIRCSANYVPLTPISFLERSAVVYRDRPSVVYG-DVQYTWKETHQRCVKLASGLAHL 59
ME M C+AN PLTPI FLER+A VY D S+VYG + YTW+ET+ RC+++AS L+ +
Sbjct: 1 MEQMKPCAANSPPLTPIGFLERAATVYGDCTSIVYGSNTVYTWRETNLRCLRVASSLSSI 60
Query: 60 GISPGDVVAALAPNVPAMYELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDY 119
GI DVV+ L+PN PAMYEL F VPM+GA+L +NTR D+ VSVLLRH +K++FVD
Sbjct: 61 GIGRSDVVSVLSPNTPAMYELQFAVPMSGAILNNINTRLDARTVSVLLRHCGSKLLFVDV 120
Query: 120 QLLPIAQGAFEILSKTSAKLPLLVLV---PECGEPVSTVASSSGNLEYESLLAIGKLR-E 175
+ +A E +S + P+LV + E G + + Y+ L+ G L +
Sbjct: 121 FSVDLA---VEAISMMTTDPPILVFIADKEEEGGDADVADRTKFSYTYDDLIHRGDLDFK 177
Query: 176 VRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPTYLWCVPMFH 235
RP+ E DP+ LNYTSGTTS+PKGV+ HRG ++ S+ + + + P YLW +P+FH
Sbjct: 178 WIRPESEWDPVVLNYTSGTTSAPKGVVHCHRGIFVMSIDSLIDWTVPKNPVYLWTLPIFH 237
Query: 236 CNGWCLTWAVAAQGGTNVCQRTVNAKEIFDNITRHKVTHFGGAPTVLNMIA 286
NGW W +AA GGTNVC R +A I+ I H VTH GAP VLNM++
Sbjct: 238 ANGWSYPWGIAAVGGTNVCLRKFDAPLIYRLIRDHGVTHMCGAPVVLNMLS 288
|
May act as an acid--thiol ligase that activates carboxylic acids by forming acyl-CoAs. Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: - |
| >sp|Q9FFE9|AAE6_ARATH Probable acyl-activating enzyme 6 OS=Arabidopsis thaliana GN=AAE6 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 256 bits (655), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 140/292 (47%), Positives = 191/292 (65%), Gaps = 10/292 (3%)
Query: 1 MEGMIRCSANYVPLTPISFLERSAVVYRDRPSVVYG-DVQYTWKETHQRCVKLASGLAHL 59
ME M C+AN PLTPI FLER+A VY D S+VYG + YTW+ET+ RC+++AS L+ +
Sbjct: 1 MEEMKPCAANSPPLTPIGFLERAATVYGDCTSIVYGSNTVYTWRETNLRCLRVASSLSSI 60
Query: 60 GISPGDVVAALAPNVPAMYELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDY 119
GI DVV+ L+PN PAMYEL F VPM+GA+L +NTR D+ VSVLLRH E+K++FVD
Sbjct: 61 GIGRSDVVSVLSPNTPAMYELQFAVPMSGAILNNINTRLDARTVSVLLRHCESKLLFVDV 120
Query: 120 QLLPIAQGAFEILSKTSAKLPLLVLVPECGEP--VSTVAS-SSGNLEYESLLAIGK--LR 174
+ +A E +S + P+LV++ + E V+ VA S + Y+ L+ G +
Sbjct: 121 FSVDLA---VEAVSMMTTDPPILVVIADKEEEGGVADVADLSKFSYTYDDLIERGDPGFK 177
Query: 175 EVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPTYLWCVPMF 234
+R P+ E DP+ LNYTSGTTS+PKGV+ HRG ++ S+ + + + P YLW +P+F
Sbjct: 178 WIR-PESEWDPVVLNYTSGTTSAPKGVVHCHRGIFVMSVDSLIDWAVPKNPVYLWTLPIF 236
Query: 235 HCNGWCLTWAVAAQGGTNVCQRTVNAKEIFDNITRHKVTHFGGAPTVLNMIA 286
H NGW W +AA GGTNVC R +A I+ I H VTH GAP VLNM++
Sbjct: 237 HSNGWTNPWGIAAVGGTNVCLRKFDAPLIYRLIRDHGVTHMCGAPVVLNMLS 288
|
May act as an acid--thiol ligase that activates carboxylic acids by forming acyl-CoAs. Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: - |
| >sp|O80658|AAE4_ARATH Probable acyl-activating enzyme 4 OS=Arabidopsis thaliana GN=AEE4 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 249 bits (637), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 132/293 (45%), Positives = 188/293 (64%), Gaps = 6/293 (2%)
Query: 1 MEGMIRCSANYVPLTPISFLERSAVVYRDRPSVVYGDVQYTWKETHQRCVKLASGL--AH 58
ME ++ ++N PLT + FLER+A V+ D PS+++ +TW ETH RC+++AS L A
Sbjct: 1 MELLLPHASNSCPLTVLGFLERAASVFGDSPSLLHTTTVHTWSETHSRCLRIASTLSSAS 60
Query: 59 LGISPGDVVAALAPNVPAMYELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVD 118
LGI+ G VV+ + PNVP++YEL F VPM+GAVL +N R D+ +SVLLRHSE+K++FVD
Sbjct: 61 LGINRGQVVSVIGPNVPSVYELQFAVPMSGAVLNNINPRLDAHALSVLLRHSESKLVFVD 120
Query: 119 YQLLPIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVASSSGNLE-YESLLAIGKLR-EV 176
+ + A L K + P LV++ + + S+ ++ L+ YE + G LR +
Sbjct: 121 HHSSSLVLEAVSFLPKD--ERPRLVILNDGNDMPSSSSADMDFLDTYEGFMERGDLRFKW 178
Query: 177 RRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPTYLWCVPMFHC 236
RPK E P+ LNYTSGTTSSPKGV+ SHR +++++ + L + P YLW +PMFH
Sbjct: 179 VRPKSEWTPMVLNYTSGTTSSPKGVVHSHRSVFMSTINSLLDWSLPNRPVYLWTLPMFHA 238
Query: 237 NGWCLTWAVAAQGGTNVCQRTVNAKEIFDNITRHKVTHFGGAPTVLNMIANAP 289
NGW TWA AA G N+C V+ IF+ I +++VTH AP VLNM+ N P
Sbjct: 239 NGWSYTWATAAVGARNICVTRVDVPTIFNLIDKYQVTHMCAAPMVLNMLTNHP 291
|
May act as an acid--thiol ligase that activates carboxylic acids by forming acyl-CoAs. Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: - |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 301 | ||||||
| 224086034 | 552 | predicted protein [Populus trichocarpa] | 0.950 | 0.518 | 0.813 | 1e-136 | |
| 255539206 | 551 | AMP dependent ligase, putative [Ricinus | 0.986 | 0.539 | 0.773 | 1e-133 | |
| 225457528 | 566 | PREDICTED: putative acyl-CoA synthetase | 0.960 | 0.510 | 0.744 | 1e-125 | |
| 356538992 | 553 | PREDICTED: medium-chain-fatty-acid--CoA | 0.986 | 0.537 | 0.728 | 1e-124 | |
| 357481321 | 551 | 2-succinylbenzoate-CoA ligase [Medicago | 0.953 | 0.520 | 0.725 | 1e-121 | |
| 356497397 | 553 | PREDICTED: medium-chain-fatty-acid--CoA | 0.993 | 0.540 | 0.707 | 1e-121 | |
| 380042378 | 561 | acyl-activating enzyme 9 [Cannabis sativ | 0.956 | 0.513 | 0.723 | 1e-119 | |
| 449455591 | 555 | PREDICTED: probable acyl-activating enzy | 0.960 | 0.520 | 0.703 | 1e-115 | |
| 359476911 | 419 | PREDICTED: LOW QUALITY PROTEIN: medium-c | 0.956 | 0.687 | 0.712 | 1e-114 | |
| 297850474 | 555 | adenosine monophosphate binding protein | 0.993 | 0.538 | 0.675 | 1e-114 |
| >gi|224086034|ref|XP_002307787.1| predicted protein [Populus trichocarpa] gi|222857236|gb|EEE94783.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 491 bits (1265), Expect = e-136, Method: Compositional matrix adjust.
Identities = 235/289 (81%), Positives = 257/289 (88%), Gaps = 3/289 (1%)
Query: 1 MEGMIRCSANYVPLTPISFLERSAVVYRDRPSVVYGDVQYTWKETHQRCVKLASGLAHLG 60
MEGM++CSANYVPLTPISFLERSA+VYRDR SV YGD++YTWKETH+RCV+LAS LAHLG
Sbjct: 1 MEGMVKCSANYVPLTPISFLERSAIVYRDRVSVAYGDIKYTWKETHERCVRLASALAHLG 60
Query: 61 ISPGDVVAALAPNVPAMYELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQ 120
ISPGDVVAALAPN+PAMYELHFGVPMAGAVLCTLN RHDS+MVSVLL+HSEAK+IFVDYQ
Sbjct: 61 ISPGDVVAALAPNIPAMYELHFGVPMAGAVLCTLNVRHDSSMVSVLLKHSEAKLIFVDYQ 120
Query: 121 LLPIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVASSSGNLEYESLLAIGKLR-EVRRP 179
LPIAQGA EILS+ KLPLLVL+PECG+P + SS LEYESLL GKL EVRRP
Sbjct: 121 CLPIAQGALEILSERKTKLPLLVLIPECGQPAAI--SSPRILEYESLLEKGKLDFEVRRP 178
Query: 180 KDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPTYLWCVPMFHCNGW 239
+DE DPI+LNYTSGTTSSPKGVI SHRGAYLNSLAAAL N+M MP YLWCVPMFHCNGW
Sbjct: 179 RDEWDPISLNYTSGTTSSPKGVIYSHRGAYLNSLAAALLNDMSAMPVYLWCVPMFHCNGW 238
Query: 240 CLTWAVAAQGGTNVCQRTVNAKEIFDNITRHKVTHFGGAPTVLNMIANA 288
CLTWAVAAQGGTNVCQR V A++IF+NI +HKVTH GAPTVLNMI NA
Sbjct: 239 CLTWAVAAQGGTNVCQRYVTARDIFENIAQHKVTHMSGAPTVLNMIINA 287
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255539206|ref|XP_002510668.1| AMP dependent ligase, putative [Ricinus communis] gi|223551369|gb|EEF52855.1| AMP dependent ligase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 481 bits (1239), Expect = e-133, Method: Compositional matrix adjust.
Identities = 232/300 (77%), Positives = 258/300 (86%), Gaps = 3/300 (1%)
Query: 1 MEGMIRCSANYVPLTPISFLERSAVVYRDRPSVVYGDVQYTWKETHQRCVKLASGLAHLG 60
MEGMI+CSANYVPL+PISFLERSA+ YRD S+VYGDV+YTW+ETHQRC+KLAS L HLG
Sbjct: 1 MEGMIKCSANYVPLSPISFLERSAIAYRDSISIVYGDVKYTWRETHQRCIKLASALVHLG 60
Query: 61 ISPGDVVAALAPNVPAMYELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQ 120
I+ GDVVAALAPN+PA+YELHFGVPMAGAVLCTLN RHDSAMVSVLLRHSEAK+IFVD+Q
Sbjct: 61 INRGDVVAALAPNIPALYELHFGVPMAGAVLCTLNVRHDSAMVSVLLRHSEAKVIFVDHQ 120
Query: 121 LLPIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVASSSGNLEYESLLAIGKLR-EVRRP 179
L IAQGA EILSK KLP+ VLV ECG+P T SSSG+LE+ESLLA+GKL EVRRP
Sbjct: 121 FLQIAQGALEILSKLGTKLPMFVLVQECGQP--TPISSSGHLEFESLLAMGKLDFEVRRP 178
Query: 180 KDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPTYLWCVPMFHCNGW 239
DECDPI+LNYTSGTTSSPKGVI SHRGAYLNSLAA L N+M MP YLWCVPMFHCNGW
Sbjct: 179 NDECDPISLNYTSGTTSSPKGVIYSHRGAYLNSLAAVLLNDMVSMPIYLWCVPMFHCNGW 238
Query: 240 CLTWAVAAQGGTNVCQRTVNAKEIFDNITRHKVTHFGGAPTVLNMIANAPPVFENRFRGR 299
CLTW VAAQGGT+VC R+V+ K IF+NI R+KVTH GGAPTVLNMI NAP + G+
Sbjct: 239 CLTWGVAAQGGTHVCLRSVSPKGIFENIARYKVTHMGGAPTVLNMIINAPASDQKPLPGK 298
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225457528|ref|XP_002270022.1| PREDICTED: putative acyl-CoA synthetase YngI-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 455 bits (1171), Expect = e-125, Method: Compositional matrix adjust.
Identities = 219/294 (74%), Positives = 250/294 (85%), Gaps = 5/294 (1%)
Query: 1 MEGMIRCSANYVPLTPISFLERSAVVYRDRPSVVYGDVQYTWKETHQRCVKLASGLAHLG 60
MEGMIRCSAN+VPL+PISFLERSA VYRDR ++VYG V++TW++T +RC +LAS + HLG
Sbjct: 10 MEGMIRCSANHVPLSPISFLERSASVYRDRVAIVYGRVKFTWRDTLERCTRLASAITHLG 69
Query: 61 ISPGDVVAALAPNVPAMYELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQ 120
IS GDVVAALAPN+PAMYELHFGVPMAGAVLCTLN RHDSAMVS LL+HSEAK+IFVDYQ
Sbjct: 70 ISRGDVVAALAPNIPAMYELHFGVPMAGAVLCTLNIRHDSAMVSTLLKHSEAKMIFVDYQ 129
Query: 121 LLPIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVASS----SGNLEYESLLAIGKLR-E 175
LL AQGA EILSKT KLP LVL+PEC + T+++S +G+LEYE+L+A+GK +
Sbjct: 130 LLDTAQGALEILSKTRTKLPRLVLIPECDKLQPTISNSGPTVAGDLEYETLIAMGKTDFD 189
Query: 176 VRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPTYLWCVPMFH 235
+R P DE DPIALNYTSGTTS PKGVI SHRGA+LNSLAA L NEMG MP YLW VPMFH
Sbjct: 190 IRWPNDEWDPIALNYTSGTTSRPKGVIYSHRGAHLNSLAAVLLNEMGSMPVYLWTVPMFH 249
Query: 236 CNGWCLTWAVAAQGGTNVCQRTVNAKEIFDNITRHKVTHFGGAPTVLNMIANAP 289
CNGWCLTW VAAQGGTNVC R V AK IFD+I++H+VTH GGAPTVLNMI NAP
Sbjct: 250 CNGWCLTWGVAAQGGTNVCLRNVTAKGIFDSISQHRVTHMGGAPTVLNMIINAP 303
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356538992|ref|XP_003537984.1| PREDICTED: medium-chain-fatty-acid--CoA ligase-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 450 bits (1158), Expect = e-124, Method: Compositional matrix adjust.
Identities = 220/302 (72%), Positives = 248/302 (82%), Gaps = 5/302 (1%)
Query: 1 MEGMIRCSANYVPLTPISFLERSAVVYRDRPSVVYGDVQYTWKETHQRCVKLASGLAHLG 60
MEG IRCSANYVPLTPISFL+R+AVVYRDR S+V GDV YTW +THQRC+KLAS ++ LG
Sbjct: 1 MEGSIRCSANYVPLTPISFLDRAAVVYRDRLSLVSGDVTYTWTQTHQRCIKLASSISQLG 60
Query: 61 I--SPGDVVAALAPNVPAMYELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVD 118
+ SP DVVA LAPNVPAMYELHF VPM+GAVLCTLNTRHDSAMVS+LL+HSEAK++FVD
Sbjct: 61 VGLSPLDVVAVLAPNVPAMYELHFAVPMSGAVLCTLNTRHDSAMVSLLLKHSEAKLVFVD 120
Query: 119 YQLLPIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVASSSGNLEYESLLAIGKLR-EVR 177
YQLL IA+GA +ILSK + KLP LVL+ E G P + + G L YE L+A G L+ EVR
Sbjct: 121 YQLLDIAKGALQILSKITTKLPHLVLILESGHP--SPPHAKGTLTYEDLIAKGSLQFEVR 178
Query: 178 RPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPTYLWCVPMFHCN 237
RPKDE DPI+LNYTSGTTS+PKGVI SHRGAYLNSLA L NEM MP YLWCVPMFHCN
Sbjct: 179 RPKDEWDPISLNYTSGTTSNPKGVIYSHRGAYLNSLATVLLNEMRSMPVYLWCVPMFHCN 238
Query: 238 GWCLTWAVAAQGGTNVCQRTVNAKEIFDNITRHKVTHFGGAPTVLNMIANAPPVFENRFR 297
GWCL WA+AAQGGTNVCQR+V A+ IF NI RHKVTH GGAPTVLNMI N+PP
Sbjct: 239 GWCLPWAIAAQGGTNVCQRSVTAEGIFHNIFRHKVTHMGGAPTVLNMIINSPPKVRKPLP 298
Query: 298 GR 299
G+
Sbjct: 299 GK 300
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357481321|ref|XP_003610946.1| 2-succinylbenzoate-CoA ligase [Medicago truncatula] gi|355512281|gb|AES93904.1| 2-succinylbenzoate-CoA ligase [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 442 bits (1136), Expect = e-121, Method: Compositional matrix adjust.
Identities = 211/291 (72%), Positives = 247/291 (84%), Gaps = 4/291 (1%)
Query: 1 MEGMIRCSANYVPLTPISFLERSAVVYRDRPSVVYGDVQYTWKETHQRCVKLASGLAHLG 60
MEG I+C+ANYVPLTPISFLERSA+VY ++ S++Y DV YTW +THQRC+KLAS ++ LG
Sbjct: 1 MEGTIQCNANYVPLTPISFLERSAIVYSNKVSIIYNDVTYTWSQTHQRCIKLASSISQLG 60
Query: 61 ISPGDVVAALAPNVPAMYELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQ 120
+SP VVA LAPN+PAMYELHFGVPM+GAVLCTLNTRHDS+MVS+LL+HS+AKI+FVD++
Sbjct: 61 VSPHHVVAVLAPNIPAMYELHFGVPMSGAVLCTLNTRHDSSMVSLLLKHSDAKILFVDHE 120
Query: 121 LLPIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVASSSGNLEYESLLAIGKLR-EVRRP 179
LL IA+GA EILSK++AKLPLLVL+ E G+ +V S G L YE+L++ GKL EV+RP
Sbjct: 121 LLDIAKGALEILSKSTAKLPLLVLILE-GDAHPSV--SPGTLIYENLISEGKLDFEVKRP 177
Query: 180 KDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPTYLWCVPMFHCNGW 239
KDE DPI+LNYTSGTTSSPKGV+ SHRGAYLNSLA L NEM MP YLWCVPMFHCNGW
Sbjct: 178 KDEWDPISLNYTSGTTSSPKGVVYSHRGAYLNSLATILLNEMKSMPVYLWCVPMFHCNGW 237
Query: 240 CLTWAVAAQGGTNVCQRTVNAKEIFDNITRHKVTHFGGAPTVLNMIANAPP 290
CL W +AAQGG NVCQR V AK IFDNI +HKVTH GGAPTVLN + NAPP
Sbjct: 238 CLPWGIAAQGGANVCQRNVTAKGIFDNIFKHKVTHTGGAPTVLNSLINAPP 288
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356497397|ref|XP_003517547.1| PREDICTED: medium-chain-fatty-acid--CoA ligase-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 439 bits (1129), Expect = e-121, Method: Compositional matrix adjust.
Identities = 215/304 (70%), Positives = 246/304 (80%), Gaps = 5/304 (1%)
Query: 1 MEGMIRCSANYVPLTPISFLERSAVVYRDRPSVVYGDVQYTWKETHQRCVKLASGLAHLG 60
MEG IRCSANYVPLTPISFLER+A+VYR R S++ GDV YTW +THQRC++LAS ++ LG
Sbjct: 1 MEGSIRCSANYVPLTPISFLERAALVYRHRLSLISGDVTYTWTQTHQRCIRLASSISQLG 60
Query: 61 I--SPGDVVAALAPNVPAMYELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVD 118
+ S VVA LAPNVPAMYELHF VPM+GAVLCTLNTRHDS MVS+LL+HSEAK++FVD
Sbjct: 61 VGLSLRHVVAVLAPNVPAMYELHFAVPMSGAVLCTLNTRHDSTMVSLLLKHSEAKLLFVD 120
Query: 119 YQLLPIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVASSSGNLEYESLLAIGKLR-EVR 177
YQ L IAQGA +ILSKT+ K+P LVL+ ECG P+ A G L YE L+A G L+ VR
Sbjct: 121 YQFLHIAQGALQILSKTTTKIPHLVLISECGHPLPPHAK--GTLIYEDLVAKGNLQFVVR 178
Query: 178 RPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPTYLWCVPMFHCN 237
RPKDE DPI+LNYTSGTTS+PKGVI SHRGAYLNSLA L NEM MP YLWCVPMFHCN
Sbjct: 179 RPKDEWDPISLNYTSGTTSNPKGVIYSHRGAYLNSLATVLLNEMRSMPLYLWCVPMFHCN 238
Query: 238 GWCLTWAVAAQGGTNVCQRTVNAKEIFDNITRHKVTHFGGAPTVLNMIANAPPVFENRFR 297
GWCL WA+AAQGGTNVCQR+V A+ IFDNI +HKVTH GGAPTVLNMI N+ P +
Sbjct: 239 GWCLPWAIAAQGGTNVCQRSVTAEGIFDNIFKHKVTHMGGAPTVLNMIINSSPKVQKPLP 298
Query: 298 GRWQ 301
G+ Q
Sbjct: 299 GKVQ 302
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|380042378|gb|AFD33353.1| acyl-activating enzyme 9 [Cannabis sativa] | Back alignment and taxonomy information |
|---|
Score = 434 bits (1116), Expect = e-119, Method: Compositional matrix adjust.
Identities = 215/297 (72%), Positives = 238/297 (80%), Gaps = 9/297 (3%)
Query: 1 MEGMIRCSANYVPLTPISFLERSAVVYRDRPSVVYGDVQYTWKETHQRCVKLASGLAHLG 60
MEG IRCSANYVPL+PISFL+RSA+VY DRPSVVYG+VQYTW +T +RC +LAS ++HLG
Sbjct: 1 MEGAIRCSANYVPLSPISFLKRSAIVYSDRPSVVYGNVQYTWSQTFERCKRLASAISHLG 60
Query: 61 ISPGDVVAALAPNVPAMYELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQ 120
IS G VVA LAPN+PAMYELHFGVPMAGA+LCTLN RHDSAMVSVLLRHSEAK+ FVDYQ
Sbjct: 61 ISSGHVVAVLAPNIPAMYELHFGVPMAGAILCTLNIRHDSAMVSVLLRHSEAKVFFVDYQ 120
Query: 121 LLPIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVASSSG--------NLEYESLLAIGK 172
L IAQGA ++LSK +K PLLVL+PEC + + SS LEYE LL+ G
Sbjct: 121 FLHIAQGAIDMLSKKGSKPPLLVLIPECDDDQLSTDISSSSNAISASVKLEYEQLLSTGN 180
Query: 173 LR-EVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPTYLWCV 231
L EV PKDE DPI+LNYTSGTTSSPKGVI SHRGAYLNSLA L NEM M YLWCV
Sbjct: 181 LDFEVIIPKDEWDPISLNYTSGTTSSPKGVIYSHRGAYLNSLAGVLLNEMHSMVVYLWCV 240
Query: 232 PMFHCNGWCLTWAVAAQGGTNVCQRTVNAKEIFDNITRHKVTHFGGAPTVLNMIANA 288
PMFHCNGWCL W +AAQGGTNVC R V AK IFD+I +HKVTH GGAPTVLNMI NA
Sbjct: 241 PMFHCNGWCLPWGIAAQGGTNVCLRNVTAKGIFDSIAKHKVTHMGGAPTVLNMIINA 297
|
Source: Cannabis sativa Species: Cannabis sativa Genus: Cannabis Family: Cannabaceae Order: Rosales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449455591|ref|XP_004145536.1| PREDICTED: probable acyl-activating enzyme 1, peroxisomal-like [Cucumis sativus] gi|449512665|ref|XP_004164110.1| PREDICTED: probable acyl-activating enzyme 1, peroxisomal-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 420 bits (1080), Expect = e-115, Method: Compositional matrix adjust.
Identities = 206/293 (70%), Positives = 232/293 (79%), Gaps = 4/293 (1%)
Query: 1 MEGMIRCSANYVPLTPISFLERSAVVYRDRPSVVYGDVQYTWKETHQRCVKLASGLAHLG 60
M+G RCSANYVPLTPISFLERSA VY DR S+VYG VQYTW++T QRC +LAS L G
Sbjct: 1 MDGSHRCSANYVPLTPISFLERSAAVYGDRISLVYGRVQYTWRDTLQRCTRLASALVRTG 60
Query: 61 ISPGDVVAALAPNVPAMYELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQ 120
I+ GDVVAAL PN+PAMYELHF VPMAGAVLC+LNTRHD+AMVS LL HSEAKII VDYQ
Sbjct: 61 IARGDVVAALVPNIPAMYELHFAVPMAGAVLCSLNTRHDAAMVSTLLSHSEAKIIVVDYQ 120
Query: 121 LLPIAQGAFEILSKTSAKLPLLVLVPECGEPVSTV---ASSSGNLEYESLLAIGKLR-EV 176
L I GA + +S+ KLP +V++ E +P S + S+ LE+ES LA GKL E+
Sbjct: 121 LEHIVTGAIKAMSERKEKLPRVVIIQEYDQPPSRIDRPGSALEYLEFESFLASGKLNFEI 180
Query: 177 RRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPTYLWCVPMFHC 236
RRP+DE DPIALNYTSGTTS PKGVI SHRGAYLNSL+A L N+M +P YLW VPMFHC
Sbjct: 181 RRPRDELDPIALNYTSGTTSRPKGVIFSHRGAYLNSLSAVLLNDMCSLPVYLWTVPMFHC 240
Query: 237 NGWCLTWAVAAQGGTNVCQRTVNAKEIFDNITRHKVTHFGGAPTVLNMIANAP 289
NGWCLTW VAAQ GTN+CQR V AKEIFDNI+ HKVTH GGAPTV NMI NAP
Sbjct: 241 NGWCLTWGVAAQSGTNICQRNVTAKEIFDNISLHKVTHMGGAPTVSNMIINAP 293
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359476911|ref|XP_003631909.1| PREDICTED: LOW QUALITY PROTEIN: medium-chain-fatty-acid--CoA ligase-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 417 bits (1073), Expect = e-114, Method: Compositional matrix adjust.
Identities = 206/289 (71%), Positives = 230/289 (79%), Gaps = 1/289 (0%)
Query: 2 EGMIRCSANYVPLTPISFLERSAVVYRDRPSVVYGDVQYTWKETHQRCVKLASGLAHLGI 61
EG++RC N VPL+PI+FLERSA YRDR SVVYG V+YTW ET +RC+KLAS L LGI
Sbjct: 46 EGLVRCPVNDVPLSPITFLERSATAYRDRTSVVYGSVKYTWSETQERCLKLASALTQLGI 105
Query: 62 SPGDVVAALAPNVPAMYELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQL 121
S GDVVA LAPNVPAMYELHFGVPMAGAVLCTLNTRH+SAMVS LLRHSEAKIIFVDYQL
Sbjct: 106 SRGDVVAVLAPNVPAMYELHFGVPMAGAVLCTLNTRHNSAMVSTLLRHSEAKIIFVDYQL 165
Query: 122 LPIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVASSSGNLEYESLLAIGKLR-EVRRPK 180
L IA A ++L KT K P+LVL+ E T S+S EYESLLA G+ E+RRP
Sbjct: 166 LEIAHVALDLLKKTETKPPILVLIVESDGSPPTNFSTSDGYEYESLLATGQSEFEIRRPI 225
Query: 181 DECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPTYLWCVPMFHCNGWC 240
DE DPI++NYTSGTTSSPKGV+ +HRGAYLNSLA + + MG MP YLW VPMFHCNGWC
Sbjct: 226 DEWDPISVNYTSGTTSSPKGVVYNHRGAYLNSLATFVLHGMGSMPVYLWTVPMFHCNGWC 285
Query: 241 LTWAVAAQGGTNVCQRTVNAKEIFDNITRHKVTHFGGAPTVLNMIANAP 289
L W VAAQGGTNVC R V K+IFD+I HKVTH GGAPTVLNMI N+P
Sbjct: 286 LPWGVAAQGGTNVCLRRVIPKDIFDSIALHKVTHMGGAPTVLNMIVNSP 334
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297850474|ref|XP_002893118.1| adenosine monophosphate binding protein 1 AMPBP1 [Arabidopsis lyrata subsp. lyrata] gi|297338960|gb|EFH69377.1| adenosine monophosphate binding protein 1 AMPBP1 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 417 bits (1073), Expect = e-114, Method: Compositional matrix adjust.
Identities = 204/302 (67%), Positives = 237/302 (78%), Gaps = 3/302 (0%)
Query: 1 MEGMIRCSANYVPLTPISFLERSAVVYRDRPSVVYGDVQYTWKETHQRCVKLASGLAHLG 60
MEG I+ ANYVPLTPISFL+RSAVVY DR SVVYG V+YTW++T RCV++AS L+ LG
Sbjct: 1 MEGTIKSPANYVPLTPISFLDRSAVVYADRVSVVYGSVKYTWRQTRDRCVRIASALSQLG 60
Query: 61 ISPGDVVAALAPNVPAMYELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQ 120
IS GDVV+ LAPN+PAM ELHFGVPMAGA+LCTLN RHDSA+V+VLLRHS K+IF D+Q
Sbjct: 61 ISTGDVVSVLAPNIPAMVELHFGVPMAGALLCTLNIRHDSALVAVLLRHSGTKVIFADHQ 120
Query: 121 LLPIAQGAFEILSKTSAKLPLLVLVPE-CGEPVSTVASSSGN-LEYESLLAIGKLR-EVR 177
L IAQGA EILSK K+P+LVLVPE + VS S + +EYE ++A+GK EV
Sbjct: 121 FLQIAQGACEILSKKGDKVPILVLVPEPLTQSVSGKKRSEEDIMEYEDVVAMGKSDFEVI 180
Query: 178 RPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPTYLWCVPMFHCN 237
RP DECDPI++NYTSGTTSSPKGV+ SHRGAYLNSLAA L NEM PTYLW PMFHCN
Sbjct: 181 RPTDECDPISVNYTSGTTSSPKGVVYSHRGAYLNSLAAVLLNEMHSSPTYLWTNPMFHCN 240
Query: 238 GWCLTWAVAAQGGTNVCQRTVNAKEIFDNITRHKVTHFGGAPTVLNMIANAPPVFENRFR 297
GWCL W V A GGTN+C R V AK IFDN+++HKVTH GGAPT+LNMI NAP +
Sbjct: 241 GWCLLWGVTAIGGTNICLRNVTAKAIFDNVSQHKVTHMGGAPTILNMIINAPESEQKSLP 300
Query: 298 GR 299
G+
Sbjct: 301 GK 302
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 301 | ||||||
| TAIR|locus:2030407 | 556 | AAE1 "acyl activating enzyme 1 | 0.960 | 0.519 | 0.683 | 1.7e-105 | |
| TAIR|locus:2057249 | 603 | AT2G17650 [Arabidopsis thalian | 0.953 | 0.475 | 0.614 | 9e-93 | |
| TAIR|locus:2014599 | 546 | AT1G76290 [Arabidopsis thalian | 0.933 | 0.514 | 0.577 | 2.7e-84 | |
| TAIR|locus:2013860 | 572 | AAE11 "acyl-activating enzyme | 0.936 | 0.493 | 0.487 | 1.4e-73 | |
| TAIR|locus:2009714 | 578 | AAE12 "acyl activating enzyme | 0.936 | 0.487 | 0.477 | 7.7e-71 | |
| TAIR|locus:2009774 | 580 | BZO1 "benzoyloxyglucosinolate | 0.936 | 0.486 | 0.474 | 1.6e-70 | |
| TAIR|locus:2086122 | 569 | AAE7 "acyl-activating enzyme 7 | 0.960 | 0.507 | 0.467 | 2.4e-69 | |
| TIGR_CMR|SPO_0677 | 542 | SPO_0677 "AMP-binding protein" | 0.923 | 0.512 | 0.480 | 7.2e-68 | |
| UNIPROTKB|Q47WB3 | 541 | CPS_4259 "AMP-binding protein" | 0.913 | 0.508 | 0.469 | 2.5e-65 | |
| TIGR_CMR|CPS_4259 | 541 | CPS_4259 "AMP-binding protein" | 0.913 | 0.508 | 0.469 | 2.5e-65 |
| TAIR|locus:2030407 AAE1 "acyl activating enzyme 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1044 (372.6 bits), Expect = 1.7e-105, P = 1.7e-105
Identities = 199/291 (68%), Positives = 231/291 (79%)
Query: 1 MEGMIRCSANYVPLTPISFLERSAVVYRDRPSVVYGDVQYTWKETHQRCVKLASGLAHLG 60
MEG I+ ANYVPLTPISFL+RSAVVY DR S+VYG V+YTW++T RCV++AS L+ LG
Sbjct: 3 MEGTIKSPANYVPLTPISFLDRSAVVYADRVSIVYGSVKYTWRQTRDRCVRIASALSQLG 62
Query: 61 ISPGDVVAALAPNVPAMYELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQ 120
IS GDVV+ LAPNVPAM ELHFGVPMAGA+LCTLN RHDS++V+VLLRHS K+IF D+Q
Sbjct: 63 ISTGDVVSVLAPNVPAMVELHFGVPMAGALLCTLNIRHDSSLVAVLLRHSGTKVIFADHQ 122
Query: 121 LLPIAQGAFEILSKTSAKLPLLVLVPE-CGEPVSTVASSSGNLEYESLLAIGKLR-EVRR 178
L IA+GA EILS K+P+LVL+PE + VS S +EYE ++A+GK EV R
Sbjct: 123 FLQIAEGACEILSNKGDKVPILVLIPEPLTQSVSRKKRSEEMMEYEDVVAMGKSDFEVIR 182
Query: 179 PKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPTYLWCVPMFHCNG 238
P DECD I++NYTSGTTSSPKGV+ SHRGAYLNSLAA L NEM PTYLW PMFHCNG
Sbjct: 183 PTDECDAISVNYTSGTTSSPKGVVYSHRGAYLNSLAAVLLNEMHSSPTYLWTNPMFHCNG 242
Query: 239 WCLTWAVAAQGGTNVCQRTVNAKEIFDNITRHKVTHFGGAPTVLNMIANAP 289
WCL W V A GGTN+C R V AK IFDNI++HKVTH GGAPT+LNMI NAP
Sbjct: 243 WCLLWGVTAIGGTNICLRNVTAKAIFDNISQHKVTHMGGAPTILNMIINAP 293
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| TAIR|locus:2057249 AT2G17650 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 924 (330.3 bits), Expect = 9.0e-93, P = 9.0e-93
Identities = 183/298 (61%), Positives = 225/298 (75%)
Query: 1 MEGMIRCSANYVPLTPISFLERSAVVYRDRPSVVYGDVQYTWKETHQRCVKLASGLAHLG 60
+EG++R AN+ PL+PI+FLERSA VYRDR S+V+G V++TW +T+QRC++LAS L +LG
Sbjct: 48 IEGLLRSPANFSPLSPITFLERSAKVYRDRTSLVFGSVKHTWFQTYQRCLRLASALTNLG 107
Query: 61 ISPGDVVAALAPNVPAMYELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQ 120
IS GDVVAALAPNVPAM+ELHF VPMAG +LC LNTR D + +SVLL HSEAKI+FVD+Q
Sbjct: 108 ISRGDVVAALAPNVPAMHELHFAVPMAGLILCPLNTRLDPSTLSVLLAHSEAKILFVDHQ 167
Query: 121 LLPIAQGAFEILSKT--SAKLPLLVLVPECGEP-------VSTVASS-SGNLEYESLLAI 170
LL IA GA ++L+K+ + K LVL+ + + ST AS S + EYE+LL
Sbjct: 168 LLEIAHGALDLLAKSDKTRKSLKLVLISQSNDDDDSDEDSSSTFASKYSFDYEYETLLKS 227
Query: 171 GKLR-EVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPTYLW 229
G E+ +P+ E DPI++NYTSGTTS PKGV+ SHRGAYLNSLA ++M + P YLW
Sbjct: 228 GDSEFEIIKPRCEWDPISINYTSGTTSRPKGVVYSHRGAYLNSLATVFLHQMSVYPVYLW 287
Query: 230 CVPMFHCNGWCLTWAVAAQGGTNVCQRTVNAKEIFDNITRHKVTHFGGAPTVLNMIAN 287
VPMFHCNGWCL W VAAQGGTN+C R V+ K IF NI HKVTH GGAPTVLNMI N
Sbjct: 288 TVPMFHCNGWCLVWGVAAQGGTNICLRKVSPKMIFKNIAMHKVTHMGGAPTVLNMIVN 345
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| TAIR|locus:2014599 AT1G76290 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 844 (302.2 bits), Expect = 2.7e-84, P = 2.7e-84
Identities = 167/289 (57%), Positives = 207/289 (71%)
Query: 1 MEGMIRCSANYVPLTPISFLERSAVVYRDRPSVVYGDVQYTWKETHQRCVKLASGLAHLG 60
MEG +RCSANYVPL+PISFLER+AVV+ R SVVYGD+QYTW +T RCV+LAS L+ LG
Sbjct: 1 MEGTMRCSANYVPLSPISFLERAAVVFGSRTSVVYGDIQYTWHQTRDRCVRLASALSDLG 60
Query: 61 ISPGDVVAALAPNVPAMYELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQ 120
+S DVVAALAPNVPA+ EL+FG PMAGAVLC LNT DS M+++ L ++ K+ FVD +
Sbjct: 61 LSRHDVVAALAPNVPALCELYFGAPMAGAVLCVLNTTFDSQMLAMALEKTKPKVFFVDSE 120
Query: 121 LLPIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVASSSGNLEYESLLAIGKLR-EVRRP 179
L +A+ + +LS K PL++ + E P S +YE L+ G + RP
Sbjct: 121 FLSVAEESLSLLSNIEEK-PLIITITE--NPTE----QSKYEQYEDFLSTGNPNFKPIRP 173
Query: 180 KDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPTYLWCVPMFHCNGW 239
DECDPIALN+TSGTTS+PK V+ SHRGAYLN+ A + NEM MP YL VPM+HC+GW
Sbjct: 174 VDECDPIALNFTSGTTSTPKCVVYSHRGAYLNATAVGVMNEMKPMPVYLCTVPMYHCSGW 233
Query: 240 CLTWAVAAQGGTNVCQRTVNAKEIFDNITRHKVTHFGGAPTVLNMIANA 288
C W V A GG VC R VN + IFD+I +HKVT+FGG+P VLNMIANA
Sbjct: 234 CYIWTVTAFGGVIVCLREVNDEVIFDSIVKHKVTNFGGSPPVLNMIANA 282
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| TAIR|locus:2013860 AAE11 "acyl-activating enzyme 11" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 743 (266.6 bits), Expect = 1.4e-73, P = 1.4e-73
Identities = 142/291 (48%), Positives = 197/291 (67%)
Query: 1 MEGMIRCSANYVPLTPISFLERSAVVYRDRPSVVYGDVQYTWKETHQRCVKLASGLAHLG 60
M+ ++ C AN VPLTPI+FL+R++ Y +R S++YG ++TW +T+ RC +LA+ L L
Sbjct: 1 MDNLVLCEANNVPLTPITFLKRASECYPNRTSIIYGQTRFTWPQTYDRCCRLAASLLSLN 60
Query: 61 ISPGDVVAALAPNVPAMYELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQ 120
I+ DVV+ LAPNVPAMYE+HF VPM GAVL +NTR D+ ++++LRH+E KI+FVDY+
Sbjct: 61 ITRNDVVSILAPNVPAMYEMHFSVPMTGAVLNPINTRLDAKTIAIILRHAEPKILFVDYE 120
Query: 121 LLPIAQGAFEIL-SKTSAKLPLLVLVPECGEPVSTVASSSGNLEYESLLAIGK-----LR 174
P+ Q ++ + S P ++L+ E ST S L+YE L+ G+
Sbjct: 121 FAPLIQEVLRLIPTYQSQPHPRIILINEID---STTKPFSKELDYEGLIRKGEPTPSSSA 177
Query: 175 EVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPTYLWCVPMF 234
+ R +E DPI+LNYTSGTT+ PKGV+ SH+GAYL++L++ + EMG+ P YLW +PMF
Sbjct: 178 SMFRVHNEHDPISLNYTSGTTADPKGVVISHQGAYLSALSSIIGWEMGIFPVYLWTLPMF 237
Query: 235 HCNGWCLTWAVAAQGGTNVCQRTVNAKEIFDNITRHKVTHFGGAPTVLNMI 285
HCNGW TW+VAA+GGTNVC R V A EI+ NI H VTH PTV +
Sbjct: 238 HCNGWTHTWSVAARGGTNVCIRHVTAPEIYKNIELHGVTHMSCVPTVFRFL 288
|
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| TAIR|locus:2009714 AAE12 "acyl activating enzyme 12" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 717 (257.5 bits), Expect = 7.7e-71, P = 7.7e-71
Identities = 139/291 (47%), Positives = 192/291 (65%)
Query: 1 MEGMIRCSANYVPLTPISFLERSAVVYRDRPSVVYGDVQYTWKETHQRCVKLASGLAHLG 60
M+ + C AN VPLTPI+FL+R++ Y +R S++YG ++TW +T+ RC +LA+ L L
Sbjct: 1 MDNLALCEANNVPLTPITFLKRASECYPNRTSIIYGKTRFTWPQTYDRCCRLAASLISLN 60
Query: 61 ISPGDVVAALAPNVPAMYELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQ 120
I DVV+ +APN PAMYE+HF VPMAGAVL +NTR D+ ++ +LRH++ KI+F+
Sbjct: 61 IGKNDVVSVVAPNTPAMYEMHFAVPMAGAVLNPINTRLDATSIAAILRHAKPKILFIYRS 120
Query: 121 LLPIAQGAFEILSKTSAKLPL-LVLVPECGEPVSTVASSSGNLEYESLLAIGK-----LR 174
P+A+ ++LS + L L ++ + E P SS +YE L+ G+ L
Sbjct: 121 FEPLAREILQLLSSEDSNLNLPVIFIHEIDFPKRV---SSEESDYECLIQRGEPTPLLLA 177
Query: 175 EVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPTYLWCVPMF 234
+ +DE DPI+LNYTSGTT+ PKGV+ SHRGAYL++L+A + EMG P YLW +PMF
Sbjct: 178 RMFCIQDEHDPISLNYTSGTTADPKGVVISHRGAYLSTLSAIIGWEMGTCPVYLWTLPMF 237
Query: 235 HCNGWCLTWAVAAQGGTNVCQRTVNAKEIFDNITRHKVTHFGGAPTVLNMI 285
HCNGW TW AA+GGT+VC R V A EI+ NI H VTH PTV N++
Sbjct: 238 HCNGWTFTWGTAARGGTSVCMRHVTAPEIYKNIEMHNVTHMCCVPTVFNIL 288
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| TAIR|locus:2009774 BZO1 "benzoyloxyglucosinolate 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 714 (256.4 bits), Expect = 1.6e-70, P = 1.6e-70
Identities = 138/291 (47%), Positives = 194/291 (66%)
Query: 1 MEGMIRCSANYVPLTPISFLERSAVVYRDRPSVVYGDVQYTWKETHQRCVKLASGLAHLG 60
M+ + C AN VPLTP++FL+R++ Y +R S++YG ++TW +T+ RC +LA+ L L
Sbjct: 1 MDDLALCEANNVPLTPMTFLKRASECYPNRTSIIYGKTRFTWPQTYDRCCRLAASLISLN 60
Query: 61 ISPGDVVAALAPNVPAMYELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQ 120
IS DVV+ +APN PA+YE+HF VPMAGAVL +NTR D+ ++ +LRH++ KI+F+D
Sbjct: 61 ISKNDVVSVMAPNTPALYEMHFAVPMAGAVLNPINTRLDATSIAAILRHAKPKILFLDRS 120
Query: 121 LLPIAQGAFEILSKTSAKLPL-LVLVPECGEPVSTVASSSGNLEYESLLAIGK-----LR 174
+A+ + +LS + L L ++ + E P +S L+YE L+ G+ +
Sbjct: 121 FEALARESLHLLSSEDSNLNLPVIFIHENDFPKR---ASFEELDYECLIQRGEPTPSMVA 177
Query: 175 EVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPTYLWCVPMF 234
+ R +DE DPI+LNYTSGTT+ PKGV+ SHRGAYL +L+A + EMG P YLW +PMF
Sbjct: 178 RMFRIQDEHDPISLNYTSGTTADPKGVVISHRGAYLCTLSAIIGWEMGTCPVYLWTLPMF 237
Query: 235 HCNGWCLTWAVAAQGGTNVCQRTVNAKEIFDNITRHKVTHFGGAPTVLNMI 285
HCNGW TW AA+GGT+VC R V A EI+ NI H VTH PTV N++
Sbjct: 238 HCNGWTFTWGTAARGGTSVCMRHVTAPEIYKNIEMHNVTHMCCVPTVFNIL 288
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| TAIR|locus:2086122 AAE7 "acyl-activating enzyme 7" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 703 (252.5 bits), Expect = 2.4e-69, P = 2.4e-69
Identities = 138/295 (46%), Positives = 190/295 (64%)
Query: 1 MEGMIRCSANYVPLTPISFLERSAVVYRDRPSVVYGDVQYTWKETHQRCVKLASGLAHLG 60
++ + + ANY LTP+ FL+R+AVV+ R SV++G +YTW++T+ RC +LAS LA
Sbjct: 9 IDDLPKIPANYTALTPLWFLDRAAVVHPTRKSVIHGSREYTWRQTYDRCRRLASALADRS 68
Query: 61 ISPGDVVAALAPNVPAMYELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQ 120
I PG VA +APN+PAMYE HFGVPM GAVL +N R ++ V+ LL HS++ +I VD +
Sbjct: 69 IGPGSTVAIIAPNIPAMYEAHFGVPMCGAVLNCVNIRLNAPTVAFLLSHSQSSVIMVDQE 128
Query: 121 LLPIAQGAFEILSK---TSAKLPLLVLVPE--CGEPVSTVASSSGNLEYESLLAIGKLRE 175
+A+ + ++ + +S K PLL+++ + C A S G +EYE LA G
Sbjct: 129 FFTLAEDSLRLMEEKAGSSFKRPLLIVIGDHTCAPESLNRALSKGAIEYEDFLATGDPNY 188
Query: 176 V-RRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPTYLWCVPMF 234
+ P DE IAL YTSGTT+SPKGV+ HRGAY+ +L+ L M YLW +PMF
Sbjct: 189 PWQPPADEWQSIALGYTSGTTASPKGVVLHHRGAYIMALSNPLIWGMQDGAVYLWTLPMF 248
Query: 235 HCNGWCLTWAVAAQGGTNVCQRTVNAKEIFDNITRHKVTHFGGAPTVLNMIANAP 289
HCNGWC W++A GT++C R V AKE++ I ++KVTHF AP VLN I NAP
Sbjct: 249 HCNGWCFPWSLAVLSGTSICLRQVTAKEVYSMIAKYKVTHFCAAPVVLNAIVNAP 303
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| TIGR_CMR|SPO_0677 SPO_0677 "AMP-binding protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)] | Back alignment and assigned GO terms |
|---|
Score = 689 (247.6 bits), Expect = 7.2e-68, P = 7.2e-68
Identities = 137/285 (48%), Positives = 182/285 (63%)
Query: 6 RCSANYVPLTPISFLERSAVVYRDRPSVVYGDVQYTWKETHQRCVKLASGLAHLGISPGD 65
R AN+ PL+P+S++ER+A VY D PSVVYGD +YTW ET+ RC +LAS LA G+ GD
Sbjct: 13 RTPANFTPLSPLSYIERTAAVYPDYPSVVYGDRRYTWAETYTRCRRLASALAGRGLGKGD 72
Query: 66 VVAALAPNVPAMYELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIA 125
V+ +A N+P MYE HFGVPMAGAVL +NTR D+ +++ +L H+EA+++ VD + +
Sbjct: 73 TVSIIAANIPEMYEAHFGVPMAGAVLNAINTRLDAPIIAFILSHAEARVLIVDPEFSEVV 132
Query: 126 QGAFEILSKTSAKLPLLVLVPECGEPVSTVASSSGNLEYESLLAIGKLR-EVRRPKDECD 184
+ A + + +LV + +P + G L Y++LLA G + P DE D
Sbjct: 133 RDALAQIDRPD------LLVVDIEDPSFAGGAPVGTLSYDALLAEGDPDFDWSLPGDEWD 186
Query: 185 PIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPTYLWCVPMFHCNGWCLTWA 244
IALNYTSGTT +PKGV+ HRGA LN+ + L M YLW +PMFHCNGWC W
Sbjct: 187 AIALNYTSGTTGNPKGVVYHHRGAALNATSNILTWGMPQHAVYLWTLPMFHCNGWCFPWT 246
Query: 245 VAAQGGTNVCQRTVNAKEIFDNITRHKVTHFGGAPTVLNMIANAP 289
+AA G +VC R V + I+ KVTHF GAP VLNM+ANAP
Sbjct: 247 MAANAGVSVCLRAVRDEPIYRAFREEKVTHFCGAPIVLNMLANAP 291
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| UNIPROTKB|Q47WB3 CPS_4259 "AMP-binding protein" [Colwellia psychrerythraea 34H (taxid:167879)] | Back alignment and assigned GO terms |
|---|
Score = 665 (239.2 bits), Expect = 2.5e-65, P = 2.5e-65
Identities = 133/283 (46%), Positives = 182/283 (64%)
Query: 9 ANYVPLTPISFLERSAVVYRDRPSVVYGDVQYTWKETHQRCVKLASGLAHLGISPGDVVA 68
ANY+ LTPISFLER+A VY D+ + V GD+++TW E QRC + AS LA GI GD V+
Sbjct: 16 ANYMALTPISFLERAAFVYPDKTATVNGDIRHTWLEVFQRCSRFASALAKRGIGRGDTVS 75
Query: 69 ALAPNVPAMYELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGA 128
+APN+ +E+HFGVPM+GAVL ++NTR D+ ++ +L H+E K++ D + PI + A
Sbjct: 76 VIAPNISEHFEVHFGVPMSGAVLNSINTRLDAEAIAFILVHAETKVLITDKEFSPIVKKA 135
Query: 129 FEILSKTSAKLPLLVLVPECGEPVSTVASSSGNLEYESLLAIGKLR-EVRRPKDECDPIA 187
++ PL++ + +P G+L Y+ LL G E RPK+E D I+
Sbjct: 136 LRMIPHK----PLVI---DIDDPNFNEGQLIGSLTYDQLLEEGDSDFESIRPKNEWDAIS 188
Query: 188 LNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPTYLWCVPMFHCNGWCLTWAVAA 247
LNYTSGTT PKGV+ +RGAYLN+++ + MG P YLW +PMFHCNGWC W++AA
Sbjct: 189 LNYTSGTTGDPKGVVYHYRGAYLNAVSNVMSWSMGEHPVYLWTLPMFHCNGWCFPWSIAA 248
Query: 248 QGGTNVCQRTVNAKEIFDNITRHKVTHFGGAPTVLNMIANAPP 290
GT+V R V A+ IF+ I KV +F GAP VLNM+ A P
Sbjct: 249 TAGTSVSLRHVRAEPIFNLIRSEKVGYFCGAPIVLNMLNGAEP 291
|
|
| TIGR_CMR|CPS_4259 CPS_4259 "AMP-binding protein" [Colwellia psychrerythraea 34H (taxid:167879)] | Back alignment and assigned GO terms |
|---|
Score = 665 (239.2 bits), Expect = 2.5e-65, P = 2.5e-65
Identities = 133/283 (46%), Positives = 182/283 (64%)
Query: 9 ANYVPLTPISFLERSAVVYRDRPSVVYGDVQYTWKETHQRCVKLASGLAHLGISPGDVVA 68
ANY+ LTPISFLER+A VY D+ + V GD+++TW E QRC + AS LA GI GD V+
Sbjct: 16 ANYMALTPISFLERAAFVYPDKTATVNGDIRHTWLEVFQRCSRFASALAKRGIGRGDTVS 75
Query: 69 ALAPNVPAMYELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGA 128
+APN+ +E+HFGVPM+GAVL ++NTR D+ ++ +L H+E K++ D + PI + A
Sbjct: 76 VIAPNISEHFEVHFGVPMSGAVLNSINTRLDAEAIAFILVHAETKVLITDKEFSPIVKKA 135
Query: 129 FEILSKTSAKLPLLVLVPECGEPVSTVASSSGNLEYESLLAIGKLR-EVRRPKDECDPIA 187
++ PL++ + +P G+L Y+ LL G E RPK+E D I+
Sbjct: 136 LRMIPHK----PLVI---DIDDPNFNEGQLIGSLTYDQLLEEGDSDFESIRPKNEWDAIS 188
Query: 188 LNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPTYLWCVPMFHCNGWCLTWAVAA 247
LNYTSGTT PKGV+ +RGAYLN+++ + MG P YLW +PMFHCNGWC W++AA
Sbjct: 189 LNYTSGTTGDPKGVVYHYRGAYLNAVSNVMSWSMGEHPVYLWTLPMFHCNGWCFPWSIAA 248
Query: 248 QGGTNVCQRTVNAKEIFDNITRHKVTHFGGAPTVLNMIANAPP 290
GT+V R V A+ IF+ I KV +F GAP VLNM+ A P
Sbjct: 249 TAGTSVSLRHVRAEPIFNLIRSEKVGYFCGAPIVLNMLNGAEP 291
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 6.2.1 | LOW CONFIDENCE prediction! |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | fgenesh4_pg.C_LG_V001648 | hypothetical protein (552 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 301 | |||
| cd12118 | 520 | cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synt | 1e-148 | |
| PRK08162 | 545 | PRK08162, PRK08162, acyl-CoA synthetase; Validated | 1e-134 | |
| PLN02479 | 567 | PLN02479, PLN02479, acetate-CoA ligase | 1e-114 | |
| PLN03102 | 579 | PLN03102, PLN03102, acyl-activating enzyme; Provis | 1e-103 | |
| cd05915 | 509 | cd05915, ttLC_FACS_like, Fatty acyl-CoA synthetase | 1e-94 | |
| cd12119 | 517 | cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synth | 7e-60 | |
| COG0318 | 534 | COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/ | 2e-56 | |
| PRK06187 | 521 | PRK06187, PRK06187, long-chain-fatty-acid--CoA lig | 2e-54 | |
| pfam00501 | 412 | pfam00501, AMP-binding, AMP-binding enzyme | 3e-51 | |
| PRK07656 | 513 | PRK07656, PRK07656, long-chain-fatty-acid--CoA lig | 3e-41 | |
| PRK08316 | 523 | PRK08316, PRK08316, acyl-CoA synthetase; Validated | 5e-38 | |
| PRK07008 | 539 | PRK07008, PRK07008, long-chain-fatty-acid--CoA lig | 4e-34 | |
| PRK06018 | 542 | PRK06018, PRK06018, putative acyl-CoA synthetase; | 1e-31 | |
| cd05904 | 504 | cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL) | 5e-29 | |
| cd05936 | 468 | cd05936, FC-FACS_FadD_like, Prokaryotic long-chain | 2e-27 | |
| PRK08315 | 559 | PRK08315, PRK08315, AMP-binding domain protein; Va | 5e-27 | |
| cd05911 | 487 | cd05911, Firefly_Luc_like, Firefly luciferase of l | 1e-25 | |
| cd05929 | 342 | cd05929, BACL_like, Bacterial Bile acid CoA ligase | 7e-25 | |
| PRK06145 | 497 | PRK06145, PRK06145, acyl-CoA synthetase; Validated | 2e-23 | |
| PRK12583 | 558 | PRK12583, PRK12583, acyl-CoA synthetase; Provision | 6e-23 | |
| COG0365 | 528 | COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fat | 1e-22 | |
| cd05917 | 347 | cd05917, FACL_like_2, Uncharacterized subfamily of | 5e-22 | |
| PRK08276 | 502 | PRK08276, PRK08276, long-chain-fatty-acid--CoA lig | 1e-21 | |
| COG1022 | 613 | COG1022, FAA1, Long-chain acyl-CoA synthetases (AM | 2e-21 | |
| PRK06155 | 542 | PRK06155, PRK06155, crotonobetaine/carnitine-CoA l | 4e-21 | |
| PRK05620 | 576 | PRK05620, PRK05620, long-chain-fatty-acid--CoA lig | 1e-20 | |
| PRK07798 | 533 | PRK07798, PRK07798, acyl-CoA synthetase; Validated | 2e-20 | |
| PRK08279 | 600 | PRK08279, PRK08279, long-chain-acyl-CoA synthetase | 3e-20 | |
| PRK13388 | 540 | PRK13388, PRK13388, acyl-CoA synthetase; Provision | 4e-20 | |
| COG1021 | 542 | COG1021, EntE, Peptide arylation enzymes [Secondar | 4e-19 | |
| PLN02860 | 563 | PLN02860, PLN02860, o-succinylbenzoate-CoA ligase | 6e-19 | |
| PRK03640 | 483 | PRK03640, PRK03640, O-succinylbenzoic acid--CoA li | 1e-18 | |
| PRK08314 | 546 | PRK08314, PRK08314, long-chain-fatty-acid--CoA lig | 1e-18 | |
| PRK07786 | 542 | PRK07786, PRK07786, long-chain-fatty-acid--CoA lig | 2e-18 | |
| cd05920 | 483 | cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP l | 2e-18 | |
| PRK07470 | 528 | PRK07470, PRK07470, acyl-CoA synthetase; Validated | 3e-18 | |
| PRK07788 | 549 | PRK07788, PRK07788, acyl-CoA synthetase; Validated | 6e-18 | |
| PRK06710 | 563 | PRK06710, PRK06710, long-chain-fatty-acid--CoA lig | 7e-18 | |
| PRK06839 | 496 | PRK06839, PRK06839, acyl-CoA synthetase; Validated | 2e-17 | |
| TIGR03098 | 517 | TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-form | 7e-17 | |
| PLN02246 | 537 | PLN02246, PLN02246, 4-coumarate--CoA ligase | 8e-17 | |
| COG1020 | 642 | COG1020, EntF, Non-ribosomal peptide synthetase mo | 9e-17 | |
| cd05959 | 506 | cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and | 2e-16 | |
| PRK05605 | 573 | PRK05605, PRK05605, long-chain-fatty-acid--CoA lig | 4e-16 | |
| PRK06188 | 524 | PRK06188, PRK06188, acyl-CoA synthetase; Validated | 8e-16 | |
| cd05903 | 437 | cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA li | 1e-15 | |
| PRK07529 | 632 | PRK07529, PRK07529, AMP-binding domain protein; Va | 2e-15 | |
| TIGR01923 | 436 | TIGR01923, menE, O-succinylbenzoate-CoA ligase | 2e-15 | |
| PRK08008 | 517 | PRK08008, caiC, putative crotonobetaine/carnitine- | 2e-15 | |
| cd05934 | 421 | cd05934, FACL_DitJ_like, Uncharacterized subfamily | 3e-15 | |
| PRK07867 | 529 | PRK07867, PRK07867, acyl-CoA synthetase; Validated | 4e-15 | |
| cd05932 | 504 | cd05932, LC_FACS_bac, Bacterial long-chain fatty a | 5e-15 | |
| PLN02574 | 560 | PLN02574, PLN02574, 4-coumarate--CoA ligase-like | 1e-14 | |
| cd05907 | 456 | cd05907, VL_LC_FACS_like, Long-chain fatty acid Co | 2e-14 | |
| cd05940 | 444 | cd05940, FATP_FACS, Fatty acid transport proteins | 3e-14 | |
| PRK13382 | 537 | PRK13382, PRK13382, acyl-CoA synthetase; Provision | 3e-14 | |
| PRK06164 | 540 | PRK06164, PRK06164, acyl-CoA synthetase; Validated | 2e-13 | |
| TIGR02275 | 526 | TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP | 4e-13 | |
| cd04433 | 338 | cd04433, AFD_class_I, Adenylate forming domain, Cl | 4e-13 | |
| cd12117 | 474 | cd12117, A_NRPS_Srf_like, The adenylation domain o | 7e-13 | |
| PRK12406 | 509 | PRK12406, PRK12406, long-chain-fatty-acid--CoA lig | 8e-13 | |
| cd05927 | 539 | cd05927, LC-FACS_euk, Eukaryotic long-chain fatty | 2e-12 | |
| PRK06178 | 567 | PRK06178, PRK06178, acyl-CoA synthetase; Validated | 5e-12 | |
| cd05968 | 474 | cd05968, AACS_like, Uncharacterized acyl-CoA synth | 7e-12 | |
| TIGR03208 | 538 | TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate | 8e-12 | |
| PRK13391 | 511 | PRK13391, PRK13391, acyl-CoA synthetase; Provision | 1e-11 | |
| cd05943 | 616 | cd05943, AACS, Acetoacetyl-CoA synthetase (acetoac | 2e-11 | |
| PRK07514 | 504 | PRK07514, PRK07514, malonyl-CoA synthase; Validate | 2e-11 | |
| TIGR01217 | 652 | TIGR01217, ac_ac_CoA_syn, acetoacetyl-CoA synthase | 2e-11 | |
| cd05934 | 421 | cd05934, FACL_DitJ_like, Uncharacterized subfamily | 3e-11 | |
| cd05935 | 430 | cd05935, LC_FACS_like, Putative long-chain fatty a | 3e-11 | |
| TIGR02262 | 508 | TIGR02262, benz_CoA_lig, benzoate-CoA ligase famil | 4e-11 | |
| cd05941 | 430 | cd05941, MCS, Malonyl-CoA synthetase (MCS) | 5e-11 | |
| PRK07768 | 545 | PRK07768, PRK07768, long-chain-fatty-acid--CoA lig | 8e-11 | |
| cd05973 | 440 | cd05973, MACS_like_2, Uncharacterized subfamily of | 2e-10 | |
| cd05933 | 594 | cd05933, ACSBG_like, Bubblegum-like very long-chai | 2e-10 | |
| cd05931 | 547 | cd05931, FAAL, Fatty acyl-AMP ligase (FAAL) | 2e-10 | |
| cd05969 | 443 | cd05969, MACS_like_4, Uncharacterized subfamily of | 2e-10 | |
| PRK04319 | 570 | PRK04319, PRK04319, acetyl-CoA synthetase; Provisi | 3e-10 | |
| cd12114 | 476 | cd12114, A_NRPS_TlmIV_like, The adenylation domain | 5e-10 | |
| PRK10252 | 1296 | PRK10252, entF, enterobactin synthase subunit F; P | 8e-10 | |
| PRK03584 | 655 | PRK03584, PRK03584, acetoacetyl-CoA synthetase; Pr | 9e-10 | |
| cd05938 | 535 | cd05938, hsFATP2a_ACSVL_like, Fatty acid transport | 9e-10 | |
| TIGR01733 | 409 | TIGR01733, AA-adenyl-dom, amino acid adenylation d | 9e-10 | |
| PLN02736 | 651 | PLN02736, PLN02736, long-chain acyl-CoA synthetase | 1e-09 | |
| cd05972 | 430 | cd05972, MACS_like, Medium-chain acyl-CoA syntheta | 2e-09 | |
| cd05967 | 607 | cd05967, PrpE, Propionyl-CoA synthetase (PrpE) | 2e-09 | |
| PRK13295 | 547 | PRK13295, PRK13295, cyclohexanecarboxylate-CoA lig | 3e-09 | |
| cd05923 | 495 | cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL) | 8e-09 | |
| PRK13390 | 501 | PRK13390, PRK13390, acyl-CoA synthetase; Provision | 1e-08 | |
| PRK07059 | 557 | PRK07059, PRK07059, Long-chain-fatty-acid--CoA lig | 2e-08 | |
| PRK09088 | 488 | PRK09088, PRK09088, acyl-CoA synthetase; Validated | 2e-08 | |
| cd05912 | 407 | cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase | 2e-08 | |
| PLN02330 | 546 | PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1 | 3e-08 | |
| cd05935 | 430 | cd05935, LC_FACS_like, Putative long-chain fatty a | 6e-08 | |
| cd05941 | 430 | cd05941, MCS, Malonyl-CoA synthetase (MCS) | 6e-08 | |
| PRK13383 | 516 | PRK13383, PRK13383, acyl-CoA synthetase; Provision | 6e-08 | |
| cd05909 | 489 | cd05909, AAS_C, C-terminal domain of the acyl-acyl | 1e-07 | |
| cd05940 | 444 | cd05940, FATP_FACS, Fatty acid transport proteins | 2e-07 | |
| cd05912 | 407 | cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase | 2e-07 | |
| cd05971 | 439 | cd05971, MACS_like_3, Uncharacterized subfamily of | 2e-07 | |
| cd05944 | 359 | cd05944, FACL_like_4, Uncharacterized subfamily of | 2e-07 | |
| PLN02861 | 660 | PLN02861, PLN02861, long-chain-fatty-acid-CoA liga | 3e-07 | |
| cd05918 | 447 | cd05918, A_NRPS_SidN3_like, The adenylation (A) do | 4e-07 | |
| PLN02430 | 660 | PLN02430, PLN02430, long-chain-fatty-acid-CoA liga | 5e-07 | |
| cd05919 | 436 | cd05919, BCL_like, Benzoate CoA ligase (BCL) and s | 5e-07 | |
| cd05928 | 530 | cd05928, MACS_euk, Eukaryotic Medium-chain acyl-Co | 6e-07 | |
| PRK09192 | 579 | PRK09192, PRK09192, acyl-CoA synthetase; Validated | 6e-07 | |
| cd05926 | 345 | cd05926, FACL_fum10p_like, Subfamily of fatty acid | 6e-07 | |
| cd05945 | 447 | cd05945, DltA, D-alanine:D-alanyl carrier protein | 1e-06 | |
| cd05907 | 456 | cd05907, VL_LC_FACS_like, Long-chain fatty acid Co | 2e-06 | |
| PRK12316 | 5163 | PRK12316, PRK12316, peptide synthase; Provisional | 3e-06 | |
| TIGR03205 | 541 | TIGR03205, pimA, dicarboxylate--CoA ligase PimA | 4e-06 | |
| cd05937 | 468 | cd05937, FATP_chFAT1_like, Uncharacterized subfami | 4e-06 | |
| cd12115 | 449 | cd12115, A_NRPS_Sfm_like, The adenylation domain o | 5e-06 | |
| cd05968 | 474 | cd05968, AACS_like, Uncharacterized acyl-CoA synth | 6e-06 | |
| PRK09029 | 458 | PRK09029, PRK09029, O-succinylbenzoic acid--CoA li | 1e-05 | |
| cd05922 | 350 | cd05922, FACL_like_6, Uncharacterized subfamily of | 1e-05 | |
| PRK09274 | 552 | PRK09274, PRK09274, peptide synthase; Provisional | 1e-05 | |
| PRK08180 | 614 | PRK08180, PRK08180, feruloyl-CoA synthase; Reviewe | 2e-05 | |
| PRK12467 | 3956 | PRK12467, PRK12467, peptide synthase; Provisional | 3e-05 | |
| cd05974 | 433 | cd05974, MACS_like_1, Uncharacterized subfamily of | 5e-05 | |
| cd05930 | 445 | cd05930, A_NRPS, The adenylation domain of nonribo | 5e-05 | |
| cd05921 | 559 | cd05921, FCS, Feruloyl-CoA synthetase (FCS) | 5e-05 | |
| PRK10946 | 536 | PRK10946, entE, enterobactin synthase subunit E; P | 5e-05 | |
| PRK12316 | 5163 | PRK12316, PRK12316, peptide synthase; Provisional | 7e-05 | |
| cd05910 | 455 | cd05910, FACL_like_1, Uncharacterized subfamily of | 9e-05 | |
| PRK08751 | 560 | PRK08751, PRK08751, putative long-chain fatty acyl | 9e-05 | |
| cd05930 | 445 | cd05930, A_NRPS, The adenylation domain of nonribo | 1e-04 | |
| PRK06087 | 547 | PRK06087, PRK06087, short chain acyl-CoA synthetas | 1e-04 | |
| PTZ00216 | 700 | PTZ00216, PTZ00216, acyl-CoA synthetase; Provision | 2e-04 | |
| cd05972 | 430 | cd05972, MACS_like, Medium-chain acyl-CoA syntheta | 3e-04 | |
| cd05906 | 560 | cd05906, A_NRPS_TubE_like, The adenylation domain | 3e-04 | |
| cd05939 | 474 | cd05939, hsFATP4_like, Fatty acid transport protei | 3e-04 | |
| PLN02614 | 666 | PLN02614, PLN02614, long-chain acyl-CoA synthetase | 5e-04 | |
| PRK06814 | 1140 | PRK06814, PRK06814, acylglycerophosphoethanolamine | 8e-04 | |
| cd05945 | 447 | cd05945, DltA, D-alanine:D-alanyl carrier protein | 0.001 | |
| PRK06334 | 539 | PRK06334, PRK06334, long chain fatty acid--[acyl-c | 0.001 | |
| TIGR02188 | 625 | TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase | 0.001 | |
| cd05966 | 602 | cd05966, ACS, Acetyl-CoA synthetase (also known as | 0.001 | |
| cd05919 | 436 | cd05919, BCL_like, Benzoate CoA ligase (BCL) and s | 0.002 | |
| PRK12316 | 5163 | PRK12316, PRK12316, peptide synthase; Provisional | 0.002 | |
| cd05910 | 455 | cd05910, FACL_like_1, Uncharacterized subfamily of | 0.002 | |
| PRK05677 | 562 | PRK05677, PRK05677, long-chain-fatty-acid--CoA lig | 0.002 | |
| cd05924 | 365 | cd05924, FACL_like_5, Uncharacterized subfamily of | 0.002 | |
| PRK12582 | 624 | PRK12582, PRK12582, acyl-CoA synthetase; Provision | 0.002 | |
| cd05971 | 439 | cd05971, MACS_like_3, Uncharacterized subfamily of | 0.003 | |
| PRK12467 | 3956 | PRK12467, PRK12467, peptide synthase; Provisional | 0.003 | |
| PRK12467 | 3956 | PRK12467, PRK12467, peptide synthase; Provisional | 0.004 | |
| PRK07638 | 487 | PRK07638, PRK07638, acyl-CoA synthetase; Validated | 0.004 | |
| cd12116 | 438 | cd12116, A_NRPS_Ta1_like, The adenylation domain o | 0.004 |
| >gnl|CDD|213326 cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles and Arabidopsis | Back alignment and domain information |
|---|
Score = 424 bits (1093), Expect = e-148
Identities = 157/281 (55%), Positives = 193/281 (68%), Gaps = 8/281 (2%)
Query: 11 YVPLTPISFLERSAVVYRDRPSVVYGDVQYTWKETHQRCVKLASGLAHLGISPGDVVAAL 70
YVPLTP+SFLER+A VY DR +VVYGD +YT++ET+ RC +LAS L+ LGI GDVVA L
Sbjct: 1 YVPLTPLSFLERAAKVYPDRTAVVYGDRRYTYRETYDRCRRLASALSKLGIGKGDVVAVL 60
Query: 71 APNVPAMYELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFE 130
APN PAM E HFGVPMAGAVL LNTR D+ ++ +L HSEAK++FVD + L +A+ A
Sbjct: 61 APNTPAMLEAHFGVPMAGAVLVPLNTRLDADDIAFILNHSEAKVLFVDQEFLSLAEEA-- 118
Query: 131 ILSKTSAKLPLLVLVPECGEPVSTVASSSGNLEYESLLAIGKLREV-RRPKDECDPIALN 189
A L ++ +S A S +YE LLA G + P DE DPI+LN
Sbjct: 119 -----LALLSTKEIIDTEIIVISPAAEDSEEGDYEDLLAGGDPDPLPIPPDDEWDPISLN 173
Query: 190 YTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPTYLWCVPMFHCNGWCLTWAVAAQG 249
YTSGTT +PKGV+ +HRGAYLN+L + M P YLW +PMFHCNGWC WA+ A G
Sbjct: 174 YTSGTTGNPKGVVYTHRGAYLNALGNVIEWGMPDRPVYLWTLPMFHCNGWCFPWAITAVG 233
Query: 250 GTNVCQRTVNAKEIFDNITRHKVTHFGGAPTVLNMIANAPP 290
GT+VC R V+A I+D I +HKVTH GAPTVLNM+ANAP
Sbjct: 234 GTHVCLRKVDAPAIYDLIEKHKVTHLCGAPTVLNMLANAPE 274
|
This family includes fatty acyl-CoA synthetases that can activate medium to long-chain fatty acids. These enzymes catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid. Also included in this family are acyl activating enzymes from Arabidopsis, which contains a large number of proteins from this family with up to 63 different genes, many of which are uncharacterized. Length = 520 |
| >gnl|CDD|236169 PRK08162, PRK08162, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 389 bits (1002), Expect = e-134
Identities = 156/290 (53%), Positives = 192/290 (66%), Gaps = 7/290 (2%)
Query: 2 EGMIRCSANYVPLTPISFLERSAVVYRDRPSVVYGDVQYTWKETHQRCVKLASGLAHLGI 61
+G+ R +ANYVPLTP+SFLER+A VY DRP+V++GD + TW ET+ RC +LAS LA GI
Sbjct: 6 QGLDRNAANYVPLTPLSFLERAAEVYPDRPAVIHGDRRRTWAETYARCRRLASALARRGI 65
Query: 62 SPGDVVAALAPNVPAMYELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQL 121
GD VA L PN+PAM E HFGVPMAGAVL TLNTR D+A ++ +LRH EAK++ VD +
Sbjct: 66 GRGDTVAVLLPNIPAMVEAHFGVPMAGAVLNTLNTRLDAASIAFMLRHGEAKVLIVDTEF 125
Query: 122 LPIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVASSSGNLEYESLLAIG-KLREVRRPK 180
+A+ A +L LV + +P G L+YE+ LA G P
Sbjct: 126 AEVAREALALLPGPK------PLVIDVDDPEYPGGRFIGALDYEAFLASGDPDFAWTLPA 179
Query: 181 DECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPTYLWCVPMFHCNGWC 240
DE D IALNYTSGTT +PKGV+ HRGAYLN+L+ L M P YLW +PMFHCNGWC
Sbjct: 180 DEWDAIALNYTSGTTGNPKGVVYHHRGAYLNALSNILAWGMPKHPVYLWTLPMFHCNGWC 239
Query: 241 LTWAVAAQGGTNVCQRTVNAKEIFDNITRHKVTHFGGAPTVLNMIANAPP 290
W VAA+ GTNVC R V+ K IFD I H VTH+ GAP VL+ + NAP
Sbjct: 240 FPWTVAARAGTNVCLRKVDPKLIFDLIREHGVTHYCGAPIVLSALINAPA 289
|
Length = 545 |
| >gnl|CDD|178097 PLN02479, PLN02479, acetate-CoA ligase | Back alignment and domain information |
|---|
Score = 339 bits (872), Expect = e-114
Identities = 147/291 (50%), Positives = 190/291 (65%), Gaps = 6/291 (2%)
Query: 6 RCSANYVPLTPISFLERSAVVYRDRPSVVYGDVQYTWKETHQRCVKLASGLAHLGISPGD 65
+ +ANY LTP+ FLER+AVV+ R SVV+G V+YTW +T+QRC +LAS LA I PG
Sbjct: 12 KNAANYTALTPLWFLERAAVVHPTRKSVVHGSVRYTWAQTYQRCRRLASALAKRSIGPGS 71
Query: 66 VVAALAPNVPAMYELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIA 125
VA +APN+PAMYE HFGVPMAGAV+ +N R ++ ++ LL HS+++++ VD + +A
Sbjct: 72 TVAVIAPNIPAMYEAHFGVPMAGAVVNCVNIRLNAPTIAFLLEHSKSEVVMVDQEFFTLA 131
Query: 126 QGAFEILS---KTSAKLPLLVLV--PECGEPVSTVASSSGNLEYESLLAIGKLREV-RRP 179
+ A +IL+ K+S K PLL+++ P C A G +EYE L G + P
Sbjct: 132 EEALKILAEKKKSSFKPPLLIVIGDPTCDPKSLQYALGKGAIEYEKFLETGDPEFAWKPP 191
Query: 180 KDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPTYLWCVPMFHCNGW 239
DE IAL YTSGTT+SPKGV+ HRGAYL +L+ AL M YLW +PMFHCNGW
Sbjct: 192 ADEWQSIALGYTSGTTASPKGVVLHHRGAYLMALSNALIWGMNEGAVYLWTLPMFHCNGW 251
Query: 240 CLTWAVAAQGGTNVCQRTVNAKEIFDNITRHKVTHFGGAPTVLNMIANAPP 290
C TW +AA GTN+C R V AK I+ I + VTHF AP VLN I NAP
Sbjct: 252 CFTWTLAALCGTNICLRQVTAKAIYSAIANYGVTHFCAAPVVLNTIVNAPK 302
|
Length = 567 |
| >gnl|CDD|215576 PLN03102, PLN03102, acyl-activating enzyme; Provisional | Back alignment and domain information |
|---|
Score = 313 bits (802), Expect = e-103
Identities = 143/290 (49%), Positives = 193/290 (66%), Gaps = 7/290 (2%)
Query: 1 MEGMIRCSANYVPLTPISFLERSAVVYRDRPSVVYGDVQYTWKETHQRCVKLASGLAHLG 60
M+ + C AN VPLTPI+FL+R++ Y +R S++YG ++TW +T+ RC +LA+ L L
Sbjct: 1 MDNLALCEANNVPLTPITFLKRASECYPNRTSIIYGKTRFTWPQTYDRCCRLAASLISLN 60
Query: 61 ISPGDVVAALAPNVPAMYELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQ 120
I+ DVV+ LAPN PAMYE+HF VPMAGAVL +NTR D+ ++ +LRH++ KI+FVD
Sbjct: 61 ITKNDVVSVLAPNTPAMYEMHFAVPMAGAVLNPINTRLDATSIAAILRHAKPKILFVDRS 120
Query: 121 LLPIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVASSSGNLEYESLLAIGK-----LRE 175
P+A+ +LS + L L V+ E SS L+YE L+ G+ +
Sbjct: 121 FEPLAREVLHLLSSEDSNLNLPVIF--IHEIDFPKRPSSEELDYECLIQRGEPTPSLVAR 178
Query: 176 VRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPTYLWCVPMFH 235
+ R +DE DPI+LNYTSGTT+ PKGV+ SHRGAYL++L+A + EMG P YLW +PMFH
Sbjct: 179 MFRIQDEHDPISLNYTSGTTADPKGVVISHRGAYLSTLSAIIGWEMGTCPVYLWTLPMFH 238
Query: 236 CNGWCLTWAVAAQGGTNVCQRTVNAKEIFDNITRHKVTHFGGAPTVLNMI 285
CNGW TW AA+GGT+VC R V A EI+ NI H VTH PTV N++
Sbjct: 239 CNGWTFTWGTAARGGTSVCMRHVTAPEIYKNIEMHNVTHMCCVPTVFNIL 288
|
Length = 579 |
| >gnl|CDD|213283 cd05915, ttLC_FACS_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles | Back alignment and domain information |
|---|
Score = 288 bits (739), Expect = 1e-94
Identities = 81/280 (28%), Positives = 107/280 (38%), Gaps = 23/280 (8%)
Query: 13 PLTPISFLERSAVVYRDRPSVVYGDVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAP 72
+ R VV R + T+ E +QR +L GL LG+ GD VA L
Sbjct: 1 LERAAALFGRKEVVSRLH---TGEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGF 57
Query: 73 NVPAMYELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEIL 132
N E +F VP GAVL T N R ++ +L H+E K++ D LLP+ + L
Sbjct: 58 NHFRHLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRGEL 117
Query: 133 SKTSAKLPLLVLVPECGEPVSTVASSSGNLEYESLLAIGKLR-EVRRPKDECDPIALNYT 191
V E E + YT
Sbjct: 118 KTVQ----------------HFVVMDEKAPEGYLAYEEALGEEADPVRVPERAACGMAYT 161
Query: 192 SGTTSSPKGVICSHRGAYLNSLAAALFNEMGL--MPTYLWCVPMFHCNGWCLTWAVAAQG 249
+GTT PKGV+ SHR L+SLAA+L + L L VPMFH N WCL +A G
Sbjct: 162 TGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNAWCLPYAATLVG 221
Query: 250 GTNVCQRTVNAKE-IFDNITRHKVTHFGGAPTVLNMIANA 288
V + + VT G PTV +A+
Sbjct: 222 AKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADY 261
|
This family includes fatty acyl-CoA synthetases that can activate medium-chain to long-chain fatty acids. They catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid, while another member in this family, the AlkK protein identified in Pseudomonas oleovorans, targets medium chain fatty acids. This family also includes an uncharacterized subgroup of FACS. Length = 509 |
| >gnl|CDD|213327 cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles | Back alignment and domain information |
|---|
Score = 198 bits (506), Expect = 7e-60
Identities = 99/287 (34%), Positives = 134/287 (46%), Gaps = 18/287 (6%)
Query: 19 FLERSAVVYRDRPSVVY-----GDVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPN 73
LE +A + DR +V +YT+ + ++R +LA+ L LG+ PGD VA LA N
Sbjct: 1 ILEHAARYFGDR-EIVSRTPDGSIHRYTYADFYRRVRRLANALESLGVKPGDRVATLAWN 59
Query: 74 VPAMYELHFGVPMAGAVLCTLNTR-HDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEIL 132
EL+F VP GAVL TLN R + + + H+E K+IFVD LP +L
Sbjct: 60 THRHLELYFAVPGMGAVLHTLNPRLSPEQIAYI-INHAEDKVIFVDDDFLP-------LL 111
Query: 133 SKTSAKLPLLVLVPECGEPVSTVASSSGNLEYESLLAIGKLREVRRPKDECDPIALNYTS 192
+ +LP + V + S YE LL DE L YTS
Sbjct: 112 EAIAPRLPTVKAVVVYDDADMPETSLPNVYAYEELLEEESPEYEWPELDENTAAGLCYTS 171
Query: 193 GTTSSPKGVICSHRGAYLNSLAAALFNEMGLMP--TYLWCVPMFHCNGWCLTWAVAAQGG 250
GTT +PKGV+ SHR L++LA+AL + +GL T L VPMFH N W L +A G
Sbjct: 172 GTTGNPKGVVYSHRSLVLHTLASALPDSLGLSESDTVLPVVPMFHVNAWGLPYAATMVGA 231
Query: 251 TNV-CQRTVNAKEIFDNITRHKVTHFGGAPTVLNMIANAPPVFENRF 296
V R ++ + D I KVT G PT+ + N
Sbjct: 232 KLVLPGRYLDPASLLDLIEEEKVTVSAGVPTIWLGLLNYLEANGKDL 278
|
This family includes fatty acyl-CoA synthetases that can activate medium-chain to long-chain fatty acids. They catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family was shown catalyzing the long-chain fatty acid, myristoyl acid, while another member in this family, the AlkK protein identified from Pseudomonas oleovorans, targets medium chain fatty acids. This family also includes uncharacterized FACS proteins. Length = 517 |
| >gnl|CDD|223395 COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 190 bits (484), Expect = 2e-56
Identities = 89/296 (30%), Positives = 130/296 (43%), Gaps = 20/296 (6%)
Query: 13 PLTPISFLERSAVVYRDRPSVVYGD--VQYTWKETHQRCVKLASGLAHLGISPGDVVAAL 70
LT S LER+A DRP++++ + T++E +R +LA+ L LG+ PGD VA L
Sbjct: 10 ELTLASLLERAARRNPDRPALIFLGRGGRLTYRELDRRANRLAAALQALGVKPGDRVAIL 69
Query: 71 APNVPAMYELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFE 130
PN P AGAV LN R ++ +L + AK++ + + + E
Sbjct: 70 LPNSPEFLIAFLAALRAGAVAVPLNPRLTPRELAYILNDAGAKVLITSAEFAALLEAVAE 129
Query: 131 ILSKTSAKLPLLVLVPECGEPVSTVASSSGNLEYESLLAIGKL-REVRRPKDECDPIALN 189
L + LLV + P++ E+L A G RP D D L
Sbjct: 130 AL--PVVLVVLLVGDADDRLPIT----------LEALAAEGPGPDADARPVDPDDLAFLL 177
Query: 190 YTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMP--TYLWCVPMFHCNGWCLTW-AVA 246
YTSGTT PKGV+ +HR N+ A GL P L +P+FH G + A
Sbjct: 178 YTSGTTGLPKGVVLTHRNLLANAAGIAAALGGGLTPDDVVLSWLPLFHIFGLIVGLLAPL 237
Query: 247 AQGGTNVC--QRTVNAKEIFDNITRHKVTHFGGAPTVLNMIANAPPVFENRFRGRW 300
GGT V + +E+ I ++KVT G PT L + + P ++
Sbjct: 238 LGGGTLVLLSPEPFDPEEVLWLIEKYKVTVLSGVPTFLRELLDNPEKDDDDLSSSL 293
|
Length = 534 |
| >gnl|CDD|235730 PRK06187, PRK06187, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 184 bits (470), Expect = 2e-54
Identities = 86/283 (30%), Positives = 126/283 (44%), Gaps = 12/283 (4%)
Query: 9 ANYVPLTPISFLERSAVVYRDRPSVVYGDVQYTWKETHQRCVKLASGLAHLGISPGDVVA 68
PLT L A + D+ +V + + T+ E +R +LA+ L LG+ GD VA
Sbjct: 1 MQDYPLTIGRILRHGARKHPDKEAVYFDGRRTTYAELDERVNRLANALRALGVKKGDRVA 60
Query: 69 ALAPNVPAMYELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGA 128
N E +F VP GAVL +N R ++ +L +E +++ VD + +P+
Sbjct: 61 VFDWNSHEYLEAYFAVPKIGAVLHPINIRLKPEEIAYILNDAEDRVVLVDSEFVPLLAAI 120
Query: 129 FEILSKTSAKLPLLVLVPECGEPVSTVASSSGNLEYESLLAIGKLREVRRPKDECDPIAL 188
L + + ++ V EYE LLA DE D A+
Sbjct: 121 LPQL--PTVRTVIVEGDGPAAPLAPEV------GEYEELLAAASDTFDFPDIDENDAAAM 172
Query: 189 NYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPTYLWCVPMFHCNGWCLTWAVAA- 247
YTSGTT PKGV+ SHR +L+SLA + ++ YL VPMFH + W A
Sbjct: 173 LYTSGTTGHPKGVVLSHRNLFLHSLAVCAWLKLSRDDVYLVIVPMFHVHAW--GLPYLAL 230
Query: 248 -QGGTNVCQRTVNAKEIFDNITRHKVTHFGGAPTVLNMIANAP 289
G V R + + + D I +VT F PT+ M+ AP
Sbjct: 231 MAGAKQVIPRRFDPENLLDLIETERVTFFFAVPTIWQMLLKAP 273
|
Length = 521 |
| >gnl|CDD|215954 pfam00501, AMP-binding, AMP-binding enzyme | Back alignment and domain information |
|---|
Score = 173 bits (441), Expect = 3e-51
Identities = 71/252 (28%), Positives = 107/252 (42%), Gaps = 14/252 (5%)
Query: 41 TWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAGAVLCTLNTRHDS 100
T++E +R +LA+ L LG+ PGD VA L PN P V AGA L+ +
Sbjct: 1 TYRELDERANRLAAALRALGVGPGDRVAILLPNSPEWVVAILAVLKAGAAYVPLDPSLPA 60
Query: 101 AMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVASSSG 160
++ +L SEAK++ D +LLP E+L K L L+++ +
Sbjct: 61 ERLAYILEDSEAKVLITDDELLP---KLLEVLLKLLVLLALIIVGDDGEGLDLLDDELLA 117
Query: 161 NLEYESLLAIGKLREVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNE 220
E P D D + YTSGTT PKGV+ +HR + A
Sbjct: 118 GASAEPP---------APPVDPDDLAYIIYTSGTTGKPKGVMLTHRNLLALAAGLAERFG 168
Query: 221 MGLMPTYLWCVPMFHCNGWCLTWAVAAQGGTNVC--QRTVNAKEIFDNITRHKVTHFGGA 278
+ L +P+ + GGT V + T++ + D I ++KVT G
Sbjct: 169 LTPGDRVLLLLPLHFDGSVWEIFGPLLAGGTLVLVPKFTLDPARLLDLIEKYKVTVLYGV 228
Query: 279 PTVLNMIANAPP 290
PT+L ++ AP
Sbjct: 229 PTLLRLLLKAPE 240
|
Length = 412 |
| >gnl|CDD|236072 PRK07656, PRK07656, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 148 bits (377), Expect = 3e-41
Identities = 86/282 (30%), Positives = 123/282 (43%), Gaps = 17/282 (6%)
Query: 13 PLTPISFLERSAVVYRDRPSVVYGDVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAP 72
+T L R+A + D+ + V+GD + T+ E + R + A+ LA LGI GD VA AP
Sbjct: 4 WMTLPELLARAARRFGDKEAYVFGDQRLTYAELNARVRRAAAALAALGIGKGDRVAIWAP 63
Query: 73 NVPAMYELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEIL 132
N P G AGAV+ LNTR+ + + +L +AK +FV L + A
Sbjct: 64 NSPHWVIAALGALKAGAVVVPLNTRYTADEAAYILARGDAKALFVLGLFLGVDYSA---- 119
Query: 133 SKTSAKLPLLVLVPECGEPVSTVASSSGNLEYESLLAIGKLREVRRPKDECDPIALNYTS 192
+ +LP L V C E + + LA G E D D + +TS
Sbjct: 120 ---TTRLPALEHVVIC-ETEEDDPHTEKMKTFTDFLAAGDPAERAPEVDPDDVADILFTS 175
Query: 193 GTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPT--YLWCVPMFHCNGWCLTWAVAA--- 247
GTT PKG + +HR S AA +GL YL P FH + V A
Sbjct: 176 GTTGRPKGAMLTHRQLL--SNAADWAEYLGLTEGDRYLAANPFFHV--FGYKAGVNAPLM 231
Query: 248 QGGTNVCQRTVNAKEIFDNITRHKVTHFGGAPTVLNMIANAP 289
+G T + + E+F I ++T G PT+ N + P
Sbjct: 232 RGATILPLPVFDPDEVFRLIETERITVLPGPPTMYNSLLQHP 273
|
Length = 513 |
| >gnl|CDD|181381 PRK08316, PRK08316, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 140 bits (355), Expect = 5e-38
Identities = 81/291 (27%), Positives = 121/291 (41%), Gaps = 37/291 (12%)
Query: 19 FLERSAVVYRDRPSVVYGDVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMY 78
L RSA Y D+ ++V+GD +T+ E ++A+ L LG+ GD VAAL N A
Sbjct: 16 ILRRSARRYPDKTALVFGDRSWTYAELDAAVNRVAAALLDLGLKKGDRVAALGHNSDAYA 75
Query: 79 ELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAK 138
L AGAV +N ++ +L HS A+ VD L P A+ A A
Sbjct: 76 LLWLACARAGAVHVPVNFMLTGEELAYILDHSGARAFLVDPALAPTAEAA-------LAL 128
Query: 139 LPLLVLVPECGEPVSTVASSSGNLEYESLLAIGKLREVRRPKDECDPIALNYTSGTTSSP 198
LP+ L+ + G L++ G + E + D + YTSGT S P
Sbjct: 129 LPVDTLILSLVLG--GREAPGGWLDFADWAEAGSVAEPDVELADDDLAQILYTSGTESLP 186
Query: 199 KGVICSHR---GAYLNSLAAALFNEMGLMPTYLWCVPMFHCNGWCLTWAVAAQ------- 248
KG + +HR Y++ + A + + L +P++HC AQ
Sbjct: 187 KGAMLTHRALIAEYVSCIVAGDMSADDIP---LHALPLYHC----------AQLDVFLGP 233
Query: 249 ----GGTNVCQRTVNAKEIFDNITRHKVTHFGGAPTVLNMIANAPPVFENR 295
G TNV + + I I ++T F PTV + P F+ R
Sbjct: 234 YLYVGATNVILDAPDPELILRTIEAERITSFFAPPTVWISLLRH-PDFDTR 283
|
Length = 523 |
| >gnl|CDD|235908 PRK07008, PRK07008, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 130 bits (328), Expect = 4e-34
Identities = 91/292 (31%), Positives = 137/292 (46%), Gaps = 32/292 (10%)
Query: 12 VPLTPISFLERSAVVYRDRPSV---VYGDV-QYTWKETHQRCVKLASGLAHLGISPGDVV 67
+PL S + +A D V V GD+ +YT+++ +R +LA LA LG+ PGD V
Sbjct: 8 MPLLISSLIAHAARHAGDTEIVSRRVEGDIHRYTYRDCERRAKQLAQALAALGVEPGDRV 67
Query: 68 AALAPNVPAMYELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQG 127
LA N E ++GV +GAV T+N R ++ ++ H+E + + D LP+
Sbjct: 68 GTLAWNGYRHLEAYYGVSGSGAVCHTINPRLFPEQIAYIVNHAEDRYVLFDLTFLPLVDA 127
Query: 128 AFE--------ILSKTSAKLPLLVLVPECGEPVSTVASSSGNLEYESLLAIGKLREVRRP 179
+ +A LP A S+ L YE+L+ + + P
Sbjct: 128 LAPQCPNVKGWVAMTDAAHLP---------------AGSTPLLCYETLVG-AQDGDYDWP 171
Query: 180 K-DECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGL--MPTYLWCVPMFHC 236
+ DE +L YTSGTT +PKG + SHR L++ AAL + MGL L VPMFH
Sbjct: 172 RFDENQASSLCYTSGTTGNPKGALYSHRSTVLHAYGAALPDAMGLSARDAVLPVVPMFHV 231
Query: 237 NGWCLTWAVAAQGGTNVCQ-RTVNAKEIFDNITRHKVTHFGGAPTVLNMIAN 287
N W L ++ G V ++ K +++ I +VT G PTV + N
Sbjct: 232 NAWGLPYSAPLTGAKLVLPGPDLDGKSLYELIEAERVTFSAGVPTVWLGLLN 283
|
Length = 539 |
| >gnl|CDD|235673 PRK06018, PRK06018, putative acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 123 bits (310), Expect = 1e-31
Identities = 82/286 (28%), Positives = 134/286 (46%), Gaps = 25/286 (8%)
Query: 13 PLTPISFLERSAVVYRDRPSV---VYGD-VQYTWKETHQRCVKLASGLAHLGISPGDVVA 68
PL ++ +A ++ +R V V G V+ T+ + H R +K++ L GI GD VA
Sbjct: 9 PLLCHRIIDHAARIHGNREVVTRSVEGPIVRTTYAQIHDRALKVSQALDRDGIKLGDRVA 68
Query: 69 ALAPNVPAMYELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGA 128
+A N E +G+ GA+ T+N R ++ ++ H+E +++ D +P
Sbjct: 69 TIAWNTWRHLEAWYGIMGIGAICHTVNPRLFPEQIAWIINHAEDRVVITDLTFVP----- 123
Query: 129 FEILSKTSAKLP----LLVLVPECGEPVSTVASSSGNLEYESLLAIGKLREVRRPKDECD 184
IL K + KLP +VL P +T+ + YE +A + DE
Sbjct: 124 --ILEKIADKLPSVERYVVLTDAAHMPQTTL---KNAVAYEEWIAEADGDFAWKTFDENT 178
Query: 185 PIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMP--TYLWCVPMFHCNGWCLT 242
+ YTSGTT PKGV+ SHR L++L A + +G T L VP+FH N W +
Sbjct: 179 AAGMCYTSGTTGDPKGVLYSHRSNVLHALMANNGDALGTSAADTMLPVVPLFHANSWGIA 238
Query: 243 WAVAAQGGTNV---CQRTVNAKEIFDNITRHKVTHFGGAPTVLNMI 285
++ + G V + ++ +++ + KVT G PTV M+
Sbjct: 239 FSAPSMGTKLVMPGAK--LDGASVYELLDTEKVTFTAGVPTVWLML 282
|
Length = 542 |
| >gnl|CDD|213272 cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL) | Back alignment and domain information |
|---|
Score = 115 bits (290), Expect = 5e-29
Identities = 75/285 (26%), Positives = 114/285 (40%), Gaps = 26/285 (9%)
Query: 13 PLTPISFLERSAVVYRDRPSVVYGDV--QYTWKETHQRCVKLASGLAHLGISPGDVVAAL 70
+ L ++ + DRP+++ T+ E + +LA+GLA G GDVV L
Sbjct: 5 LSLDSASLLFASE-FGDRPALIDAATGRALTYAELERLVRRLAAGLAARGGRKGDVVLLL 63
Query: 71 APNVPAMYELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFE 130
+PN + V AGAV+ T N + A ++ ++ S AK+ +L
Sbjct: 64 SPNSLEFPVVFLAVLSAGAVVTTANPLYTPAEIAKQVKDSGAKLAITTSELAE------- 116
Query: 131 ILSKTSAKLPLLVLVPECGEPVSTVASSSGNLEYESLLAIGKLREVRRPKD-ECDPIALN 189
KL L L EPV + S+ L E + D AL
Sbjct: 117 -------KLASLAL-----EPVVLLDSADDGSAAIDDLLFADEPEPPVVVIKQDDVAALP 164
Query: 190 YTSGTTSSPKGVICSHRG--AYLNSLAAALFNEMGLMPTYLWCVPMFHCNGWC-LTWAVA 246
Y+SGTT KGV+ +HR A + L A L +PMFH G + A+
Sbjct: 165 YSSGTTGRSKGVMLTHRNLIANVAQLVAGEGPNFDREDVTLCVLPMFHIYGLTVILLALL 224
Query: 247 AQGGTNVCQRTVNAKEIFDNITRHKVTHFGGAPTVLNMIANAPPV 291
G T V + ++ I ++KVTH P ++ + P V
Sbjct: 225 RLGATVVVMPRFDLEKFLAAIEKYKVTHLPVVPPIVLALVKHPIV 269
|
4-Coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 504 |
| >gnl|CDD|213302 cd05936, FC-FACS_FadD_like, Prokaryotic long-chain fatty acid CoA synthetases similar to Escherichia coli FadD | Back alignment and domain information |
|---|
Score = 110 bits (277), Expect = 2e-27
Identities = 74/276 (26%), Positives = 113/276 (40%), Gaps = 48/276 (17%)
Query: 18 SFLERSAVVYRDRPSVVYGDVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAM 77
LER+A + DRP++ + + T+ E + + A+ L LG+ GD VA + PN P
Sbjct: 3 DLLERAARRFPDRPALTFFGRKLTYAELDELSDRFAAYLQQLGVKKGDRVALMLPNCPQF 62
Query: 78 YELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSA 137
+FG+ AGAV+ +N + + L S AK++ V +FE + A
Sbjct: 63 PIAYFGILKAGAVVVPVNPLYTPRELEHQLNDSGAKVLIVAI--------SFEDALASGA 114
Query: 138 KLPLLVLVPECGEPVSTVASSSGNLEYESLLAIGKLREVRRPKDECDPIALNYTSGTTSS 197
LPL V + P D L YT GTT
Sbjct: 115 PLPLPVELS--------------------------------PDDLA---VLQYTGGTTGV 139
Query: 198 PKGVICSHRG--AYLNSLAAALFNEMGLMPTYLWCVPMFHCNGW--CLTWAVAAQGGTNV 253
PKG + +HR A + +AA + + +L +P+FH G + + G TNV
Sbjct: 140 PKGAMLTHRNLVANVQQIAAWVKDLREGEDRFLTALPLFHIFGLTVNMLLGLRL-GATNV 198
Query: 254 CQRTVNAKEIFDNITRHKVTHFGGAPTVLNMIANAP 289
+ I R++ T F G PT+ N + N P
Sbjct: 199 LVPNFRPINVLKEIKRYRFTIFPGVPTLYNALLNHP 234
|
This subfamily of the AMP-forming adenylation family contains Escherichia coli FadD and similar prokaryotic fatty acid CoA synthetases. FadD was characterized as a long-chain fatty acid CoA synthetase. The gene fadD is regulated by the fatty acid regulatory protein FadR. Fatty acid CoA synthetase catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 468 |
| >gnl|CDD|236236 PRK08315, PRK08315, AMP-binding domain protein; Validated | Back alignment and domain information |
|---|
Score = 109 bits (276), Expect = 5e-27
Identities = 80/245 (32%), Positives = 110/245 (44%), Gaps = 36/245 (14%)
Query: 19 FLERSAVVYRDRPSVVY--GDVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPA 76
L+R+A Y DR ++VY +++T++E ++ LA GL LGI GD V APNVP
Sbjct: 21 LLDRTAARYPDREALVYRDQGLRWTYREFNEEVDALAKGLLALGIEKGDRVGIWAPNVPE 80
Query: 77 MYELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIF-------VDY-----QLLP- 123
F GA+L T+N + + + L S K + DY +L P
Sbjct: 81 WVLTQFATAKIGAILVTINPAYRLSELEYALNQSGCKALIAADGFKDSDYVAMLYELAPE 140
Query: 124 IAQGAFEILSKTSAKLPLLVLVPECGEPVSTVASSSGNLEYESLLAIGK------LREVR 177
+A L SA+LP L V G+ G L ++ LLA+G+ L +
Sbjct: 141 LATCEPGQLQ--SARLPELRRVIFLGDE-----KHPGMLNFDELLALGRAVDDAELAARQ 193
Query: 178 RPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALF--NEMGLMPTYLWC--VPM 233
D DPI + YTSGTT PKG +HR N L F M L C VP+
Sbjct: 194 ATLDPDDPINIQYTSGTTGFPKGATLTHR----NILNNGYFIGEAMKLTEEDRLCIPVPL 249
Query: 234 FHCNG 238
+HC G
Sbjct: 250 YHCFG 254
|
Length = 559 |
| >gnl|CDD|213279 cd05911, Firefly_Luc_like, Firefly luciferase of light emitting insects and 4-Coumarate-CoA Ligase (4CL) | Back alignment and domain information |
|---|
Score = 105 bits (264), Expect = 1e-25
Identities = 63/257 (24%), Positives = 105/257 (40%), Gaps = 11/257 (4%)
Query: 36 GDVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAGAVLCTLN 95
+ T+ + ++ ++LA GL LG+ GDVVA ++PN + G AG ++ N
Sbjct: 7 TGTELTFADLLKKALRLAKGLRKLGLKQGDVVALISPNSIEFPPVFLGCLAAGGIVSAAN 66
Query: 96 TRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGEPVSTV 155
+ ++ L+ S+ K+IF D L + A + L ++ +L P+ + +
Sbjct: 67 PSYTPDELAHQLKISKPKLIFCDPDELDKVKEAAKEL-GPVVRIIVLDSAPDGVLRIEDL 125
Query: 156 ASSSGNLEYESLLAIGKLREVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLN-SLA 214
E E R + D AL Y+SGTT PKGV+ SH+ N S
Sbjct: 126 LEPRLGAEDEF-------RPTPLIDGKDDTAALLYSSGTTGLPKGVMLSHKNIIANLSQV 178
Query: 215 AALFNEMGLMP--TYLWCVPMFHCNGWCLTWAVAAQGGTNVCQRTVNAKEIFDNITRHKV 272
L +P +H G T A G T + +++ I ++KV
Sbjct: 179 QDTLKGNPDSSNDVVLTFLPFYHAYGLTTTLASLLCGATVIIMPKFDSETFLKLIEKYKV 238
Query: 273 THFGGAPTVLNMIANAP 289
T P + +A +P
Sbjct: 239 TSLFLVPPIAVALAKSP 255
|
This family contains two functionally unique groups of proteins; one group is insect firefly luciferases and the other is plant 4-coumarate:coenzyme A ligases. However, they share significant sequence similarity in spite of their functional diversity. Luciferase catalyzes the production of light in the presence of MgATP, molecular oxygen, and luciferin. In the first step, luciferin is activated by acylation of its carboxylate group with ATP, resulting in an enzyme-bound luciferyl adenylate. In the second step, luciferyl adenylate reacts with molecular oxygen, producing an enzyme-bound excited state product (Luc=O*) and releasing AMP. This excited-state product then decays to the ground state (Luc=O), emitting a quantum of visible light. 4-coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and then the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 487 |
| >gnl|CDD|213295 cd05929, BACL_like, Bacterial Bile acid CoA ligases and similar proteins | Back alignment and domain information |
|---|
Score = 101 bits (255), Expect = 7e-25
Identities = 36/108 (33%), Positives = 51/108 (47%)
Query: 184 DPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPTYLWCVPMFHCNGWCLTW 243
DP + YTSGTT PKGV+ +HR N++ A ++ YL P++H G
Sbjct: 2 DPALILYTSGTTGRPKGVMLTHRNLLANAVNALAGVDLSPGDVYLLAAPLYHAAGGLFLL 61
Query: 244 AVAAQGGTNVCQRTVNAKEIFDNITRHKVTHFGGAPTVLNMIANAPPV 291
A GGT V + + + D I RH+VTH PT+ + P
Sbjct: 62 PALAAGGTVVLMPKFDPEAVLDLIERHRVTHTFLVPTMFQRLLRLPDF 109
|
Bile acid-Coenzyme A ligase catalyzes the formation of bile acid-CoA conjugates in a two-step reaction: the formation of a bile acid-AMP molecule as an intermediate, followed by the formation of a bile acid-CoA. This ligase requires a bile acid with a free carboxyl group, ATP, Mg2+, and CoA for synthesis of the final bile acid-CoA conjugate. The bile acid-CoA ligation is believed to be the initial step in the bile acid 7alpha-dehydroxylation pathway in the intestinal bacterium Eubacterium sp. Length = 342 |
| >gnl|CDD|102207 PRK06145, PRK06145, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 99.6 bits (248), Expect = 2e-23
Identities = 79/267 (29%), Positives = 117/267 (43%), Gaps = 33/267 (12%)
Query: 29 DRPSVVYGDVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAG 88
DR ++VY D + ++ E HQR ++ A L GI GDVVA L N A EL F G
Sbjct: 17 DRAALVYRDQEISYAEFHQRILQAAGMLHARGIGQGDVVALLMKNSAAFLELAFAASYLG 76
Query: 89 AVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQL-LPIAQGAFEILSKTSAKLPLLVLVPE 147
AV +N R + V+ +L + AK++ VD + +A +I+ +A+ L +
Sbjct: 77 AVFLPINYRLAADEVAYILGDAGAKLLLVDEEFDAIVALETPKIVIDAAAQADSRRLA-Q 135
Query: 148 CGEPVSTVASSSGNLEYESLLAIGKLREVRRPKDECDPIALNYTSGTTSSPKGVICSHRG 207
G + A P D + L YTSGTT PKGV+ S+
Sbjct: 136 GGLEIPPQA-------------------AVAPTDL---VRLMYTSGTTDRPKGVMHSYGN 173
Query: 208 AYLNSL--AAALFNEMGLMP-TYLWCV-PMFHCNGWCLT-WAVAAQGGTNVCQRTVNAKE 262
+ S+ AL GL L V P++H + L AV GGT R + +
Sbjct: 174 LHWKSIDHVIAL----GLTASERLLVVGPLYHVGAFDLPGIAVLWVGGTLRIHREFDPEA 229
Query: 263 IFDNITRHKVTHFGGAPTVLNMIANAP 289
+ I RH++T AP +L+ + P
Sbjct: 230 VLAAIERHRLTCAWMAPVMLSRVLTVP 256
|
Length = 497 |
| >gnl|CDD|237145 PRK12583, PRK12583, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 98.3 bits (245), Expect = 6e-23
Identities = 74/244 (30%), Positives = 103/244 (42%), Gaps = 36/244 (14%)
Query: 19 FLERSAVVYRDRPSVVYGDVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMY 78
F +R A+V R + ++YTW++ +LA GL LG+ PGD V APN
Sbjct: 31 FPDREALVVRHQ------ALRYTWRQLADAVDRLARGLLALGVQPGDRVGIWAPNCAEWL 84
Query: 79 ELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFV-------DY-----QLLP-IA 125
F GA+L +N + ++ + L S + + DY +LLP +A
Sbjct: 85 LTQFATARIGAILVNINPAYRASELEYALGQSGVRWVICADAFKTSDYHAMLQELLPGLA 144
Query: 126 QGAFEILSKTSAKLPLLVLVPECGEPVSTVASSSGNLEYESLLAIGK------LREVRRP 179
+G L+ +LP L V A G L + L A G+ L E +
Sbjct: 145 EGQPGALA--CERLPELRGVVSLA-----PAPPPGFLAWHELQARGETVSREALAERQAS 197
Query: 180 KDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPTYLWC--VPMFHCN 237
D DPI + YTSGTT PKG SH N A +GL C VP++HC
Sbjct: 198 LDRDDPINIQYTSGTTGFPKGATLSHHNILNNGYFVA--ESLGLTEHDRLCVPVPLYHCF 255
Query: 238 GWCL 241
G L
Sbjct: 256 GMVL 259
|
Length = 558 |
| >gnl|CDD|223442 COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism] | Back alignment and domain information |
|---|
Score = 97.4 bits (243), Expect = 1e-22
Identities = 58/288 (20%), Positives = 102/288 (35%), Gaps = 35/288 (12%)
Query: 21 ERSAVVYRDRPSVVYGDVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYEL 80
+ +A+++ + T+ + + +LA+ L LG GD VA PN P
Sbjct: 25 DDTAIIFDGED---GLFRELTYGDLRREVARLANALKDLGGVKGDRVAIYMPNSPEAVIA 81
Query: 81 HFGVPMAGAVLCTLNTRHDSAMVSV-----LLRHSEAKIIFVDYQLLPIAQGAFEILSKT 135
GA+ + S +S + K++ D G L +
Sbjct: 82 LLATARIGAIPAVV-----SPGLSAEAVADRIADLGPKVLIADDGTFR--NGKEIALLED 134
Query: 136 SAKLPLLVLVPECGEPVSTVASSSGNLEYESLLAIGKLREVRRPKDECDPIALNYTSGTT 195
+ + V+V L Y+ + + P DP+ L YTSGTT
Sbjct: 135 ADAVLSSVVVVP-----------RLGLWYDEAVEKASEKFEFEPLPADDPLFLLYTSGTT 183
Query: 196 SSPKGVICSHRGAYLNSLAAALFNEMGLMP--TYLWCVPMFH--CNGWCLTWAVAAQGGT 251
PKG++ SH G YL L+P + + + +A+ G T
Sbjct: 184 GKPKGIVHSHGG-YLVEHRLTAKFHGDLLPGDRFWNSSDPGWIYGLWYSVFSPLAS-GAT 241
Query: 252 NVC---QRTVNAKEIFDNITRHKVTHFGGAPTVLNMIANAPPVFENRF 296
V + + + +++ + ++KVT FG +PT L +
Sbjct: 242 TVLYDGRPFYSPERLWEALEKYKVTIFGTSPTFLRRLMKLGLGEPYDL 289
|
Length = 528 |
| >gnl|CDD|213284 cd05917, FACL_like_2, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 94.1 bits (235), Expect = 5e-22
Identities = 33/107 (30%), Positives = 44/107 (41%), Gaps = 1/107 (0%)
Query: 184 DPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPTYLWCVPMFHCNGWCLTW 243
DP + YTSGTT PKG + +HR N + A + L VP+FH G L
Sbjct: 3 DPALIQYTSGTTGRPKGAMLTHRNVLNNGYSIARRLGLTEGDRTLVPVPLFHVFGLVLGV 62
Query: 244 -AVAAQGGTNVCQRTVNAKEIFDNITRHKVTHFGGAPTVLNMIANAP 289
A G T V + I R ++T G PT+ + P
Sbjct: 63 LASLTAGATLVLMEKFDPGAALRLIERERITALHGVPTMFIALLEHP 109
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 347 |
| >gnl|CDD|236215 PRK08276, PRK08276, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 94.2 bits (235), Expect = 1e-21
Identities = 71/242 (29%), Positives = 107/242 (44%), Gaps = 25/242 (10%)
Query: 41 TWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAGAVLCTLNTRHDS 100
T+ E R +LA GL LG+ GDVVA L N P +E+++ +G +N +
Sbjct: 13 TYGELEARSNRLAHGLRALGLREGDVVAILLENNPEFFEVYWAARRSGLYYTPINWHLTA 72
Query: 101 AMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVASSSG 160
A ++ ++ S AK++ V L A E+ ++ A +PLL++V PV S
Sbjct: 73 AEIAYIVDDSGAKVLIVSAALADTAA---ELAAELPAGVPLLLVV---AGPVPGFRS--- 123
Query: 161 NLEYESLLAIGKLREVRRPKDECDPIALNYTSGTTSSPKGVICSHRG----AYLNSLAAA 216
YE LA + DE + Y+SGTT PKG+ G + A
Sbjct: 124 ---YEEALA---AQPDTPIADETAGADMLYSSGTTGRPKGIKRPLPGLDPDEAPGMMLAL 177
Query: 217 LFNEMGLMP--TYLWCVPMFHC--NGWCLTWAVAAQGGTNVCQRTVNAKEIFDNITRHKV 272
L M P YL P++H + ++ A GGT V +A+E I R++V
Sbjct: 178 LGFGMYGGPDSVYLSPAPLYHTAPLRFGMS--ALALGGTVVVMEKFDAEEALALIERYRV 235
Query: 273 TH 274
TH
Sbjct: 236 TH 237
|
Length = 502 |
| >gnl|CDD|223953 COG1022, FAA1, Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism] | Back alignment and domain information |
|---|
Score = 93.9 bits (234), Expect = 2e-21
Identities = 75/289 (25%), Positives = 119/289 (41%), Gaps = 27/289 (9%)
Query: 18 SFLERSAVVYRDRPSVV-------YGDVQYTWKETHQRCVKLASGLAHLGISPGDVVAAL 70
+ +R A +DRP V G T++E ++R LASGL LGI GD VA
Sbjct: 17 TLPKRLAERVKDRPDGVALMYKELGGWEAITYRELYERVRALASGLLSLGIPAGDRVAIF 76
Query: 71 APNVPAMYELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLP-IAQGAF 129
A N P + GAV + + ++ +L SE+K+IFV+ Q L +
Sbjct: 77 AANRPEWAIADLAILALGAVSVPIYSTSTPEQLAYILNESESKVIFVENQELLDLVLPVL 136
Query: 130 EILSKTSAKLPLLVLVPECGEPVSTVASSSGNLEYESLLAIGKLREVRRPKDECDPIA-L 188
E K + ++ LV E E + V + L E R + D +A +
Sbjct: 137 EDCPKVVDLIVIIDLVREAVEAKALVLEVFPDEGISLFLIDSAGLEGRIAPPKPDDLATI 196
Query: 189 NYTSGTTSSPKGVICSHRGAYLNSLAAAL--FNEMGLMPT-------YLWCVPMFHCNGW 239
YTSGTT +PKGV+ +HR +L A + +E+ +L P+ H
Sbjct: 197 IYTSGTTGTPKGVMLTHR-----NLLAQVAGIDEVLPPIGPGDRVLSFL---PLAHIFER 248
Query: 240 CLTWAVAAQGGTNVCQRTVNAKEIFDNITRHKVTHFGGAPTVLNMIANA 288
+A GG V + + + + +++ + T G P V +
Sbjct: 249 AFEGGLALYGGVTVLFKE-DPRTLLEDLKEVRPTVMIGVPRVWEKVYKG 296
|
Length = 613 |
| >gnl|CDD|235719 PRK06155, PRK06155, crotonobetaine/carnitine-CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 92.9 bits (231), Expect = 4e-21
Identities = 74/278 (26%), Positives = 116/278 (41%), Gaps = 14/278 (5%)
Query: 20 LERSAVVYRDRPSVVYGDVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYE 79
L R A Y DRP +V+G ++T+ E + A LA G+ GD VA + N +
Sbjct: 27 LARQAERYPDRPLLVFGGTRWTYAEAARAAAAAAHALAAAGVKRGDRVALMCGNRIEFLD 86
Query: 80 LHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKL 139
+ G GA+ +NT + +LR+S A+++ V+ LL A E L
Sbjct: 87 VFLGCAWLGAIAVPINTALRGPQLEHILRNSGARLLVVEAALLA----ALEAADPGDLPL 142
Query: 140 PLLVLVPECGEPVSTVASSSGNLEYESLLAIGKLREVRRPKDECDPIALNYTSGTTSSPK 199
P + L+ +V + L A V+ D A+ YTSGTT K
Sbjct: 143 PAVWLLD--APASVSVPAGWSTAPLPPLDAPAPAAAVQ----PGDTAAILYTSGTTGPSK 196
Query: 200 GVICSHRGAYLNSLAAALFNEMGLMPTYLWCVPMFHCNGWCLTWAVAAQGGTNVCQRTVN 259
GV C H Y +A E+G +P+FH N + G T V + +
Sbjct: 197 GVCCPHAQFYWWGRNSAEDLEIGADDVLYTTLPLFHTNALNAFFQALLAGATYVLEPRFS 256
Query: 260 AKEIFDNITRHK--VTHFGGAPTVLNMIANAPPVFENR 295
A + + RH VT+ GA +++++ + P +R
Sbjct: 257 ASGFWPAVRRHGATVTYLLGA--MVSILLSQPARESDR 292
|
Length = 542 |
| >gnl|CDD|180167 PRK05620, PRK05620, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 91.4 bits (227), Expect = 1e-20
Identities = 80/284 (28%), Positives = 127/284 (44%), Gaps = 23/284 (8%)
Query: 12 VPLTPISFLERSAVVYRDRPSVVYGDV---QYTWKETHQRCVKLASGLA-HLGISPGDVV 67
VPL+ LE + V+ D +G Q T+ R LA L LGI+ V
Sbjct: 8 VPLSLTRILEYGSTVHGDTTVTTWGGAEQEQTTFAAIGARAAALAHALHDELGITGDQRV 67
Query: 68 AALAPNVPAMYELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQG 127
++ N E+ F V GAV LN + + + ++ H+E ++I D +L A+
Sbjct: 68 GSMMYNCAEHLEVLFAVACMGAVFNPLNKQLMNDQIVHIINHAEDEVIVADPRL---AEQ 124
Query: 128 AFEILSKTSAKLPLLVLVPE-CGEPVSTVASSSGNLEYESLLAIGKLREVRRPK-DECDP 185
EIL + ++ + P + + YE+LL G+ P+ DE
Sbjct: 125 LGEILKECPCVRAVVFIGPSDADSAAAHMPEGIKVYSYEALLD-GRSTVYDWPELDETTA 183
Query: 186 IALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLM--PTYLWCVPMFHCNGWCLTW 243
A+ Y++GTT +PKGV+ SHR YL SL+ + + + ++L CVP++H W +
Sbjct: 184 AAICYSTGTTGAPKGVVYSHRSLYLQSLSLRTTDSLAVTHGESFLCCVPIYHVLSWGVPL 243
Query: 244 AVAAQG------GTNVCQRTVNAKEIFDNITRHKVTHFGGAPTV 281
A G G ++ T+ AK I + R V H G PT+
Sbjct: 244 AAFMSGTPLVFPGPDLSAPTL-AKIIATAMPR--VAH--GVPTL 282
|
Length = 576 |
| >gnl|CDD|236100 PRK07798, PRK07798, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 90.7 bits (226), Expect = 2e-20
Identities = 73/266 (27%), Positives = 103/266 (38%), Gaps = 34/266 (12%)
Query: 29 DRPSVVYGDVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAG 88
DR ++V GD + T+ E +R +LA L G+ PGD V A N E G A
Sbjct: 18 DRVALVCGDRRLTYAELEERANRLAHYLIAQGLGPGDHVGIYARNRIEYVEAMLGAFKAR 77
Query: 89 AVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPEC 148
AV +N R+ + LL S+A + + + P E+L + KL LV+V +
Sbjct: 78 AVPVNVNYRYVEDELRYLLDDSDAVALVYEREFAPRVA---EVLPRL-PKLRTLVVVEDG 133
Query: 149 GEPVSTVASSSGNLEYESLLAIG---KLREVRRPKDECDPIALNYTSGTTSSPKGVICSH 205
G ++YE LA G + R P D + L YT GTT PKGV+
Sbjct: 134 SGN----DLLPGAVDYEDALAAGSPERDFGERSPDD----LYLLYTGGTTGMPKGVMWRQ 185
Query: 206 RGAYLNSLAAALF----------------NEMGLMPTYLWCVPMFHCNGWCLTWAVAAQG 249
+ L F M + P+ H G +A G
Sbjct: 186 EDIFRVLLGGRDFATGEPIEDEEELAKRAAAGPGMRRFPAP-PLMHGAGQWAAFAALFSG 244
Query: 250 GTNVCQRTV--NAKEIFDNITRHKVT 273
T V V +A E++ I R KV
Sbjct: 245 QTVVLLPDVRFDADEVWRTIEREKVN 270
|
Length = 533 |
| >gnl|CDD|236217 PRK08279, PRK08279, long-chain-acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 90.3 bits (225), Expect = 3e-20
Identities = 72/270 (26%), Positives = 109/270 (40%), Gaps = 32/270 (11%)
Query: 20 LERSAVVYRDRPSVVYGDVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYE 79
E +A + DRP++++ D ++ E + R + A A G+ GDVVA L N P
Sbjct: 43 FEEAAARHPDRPALLFEDQSISYAELNARANRYAHWAAARGVGKGDVVALLMENRPEYLA 102
Query: 80 LHFGVPMAGAVLCTLNT--RHDSAMVSVLLRHS----EAKIIFVDYQLLPIAQGAFE-IL 132
G+ GAV+ LNT R L HS +AK + V +L+ AFE
Sbjct: 103 AWLGLAKLGAVVALLNTQQRGAV------LAHSLNLVDAKHLIVGEELVE----AFEEAR 152
Query: 133 SKTSAKLPLLVLVPECGEPVSTVASSSGNLEYESLLAIGKLREVRRPKDECDPIALNYTS 192
+ + L V + + +L + A R D YTS
Sbjct: 153 ADLARPPRLWVAGGDTLDDPEGYE----DLAAAAAGAPTTNPASRSGVTAKDTAFYIYTS 208
Query: 193 GTTSSPKGVICSHRG--AYLNSLAAALFNEMGLMPT---YLWCVPMFHCNGWCLTW-AVA 246
GTT PK + SH + L L P Y C+P++H G + W +V
Sbjct: 209 GTTGLPKAAVMSHMRWLKAMGGFGGLL----RLTPDDVLYC-CLPLYHNTGGTVAWSSVL 263
Query: 247 AQGGTNVCQRTVNAKEIFDNITRHKVTHFG 276
A G T +R +A +D++ R++ T F
Sbjct: 264 AAGATLALRRKFSASRFWDDVRRYRATAFQ 293
|
Length = 600 |
| >gnl|CDD|237374 PRK13388, PRK13388, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 90.1 bits (224), Expect = 4e-20
Identities = 70/252 (27%), Positives = 98/252 (38%), Gaps = 29/252 (11%)
Query: 29 DRPSVVYGDVQYTWKETHQRCVKLASGLAHLGISPGDV-VAALAPNVPAMYELHFGVPMA 87
D +V YGD +TW+E A+ L L + V L N P M +
Sbjct: 16 DTIAVRYGDRTWTWREVLAEAAARAAALIALADPDRPLHVGVLLGNTPEMLFWLAAAALG 75
Query: 88 GAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPE 147
G VL LNT A ++ +R ++ +++ D + PLL +
Sbjct: 76 GYVLVGLNTTRRGAALAADIRRADCQLLVTD-----------------AEHRPLLDGLDL 118
Query: 148 CGEPVSTVASSSGNLEYESLLAIGKLREVRRPKDECDPIALNYTSGTTSSPKGVICSHRG 207
G V V + Y L+A R D DP L +TSGTT +PK V CSH
Sbjct: 119 PGVRVLDVDTP----AYAELVAAAGALTPHREVDAMDPFMLIFTSGTTGAPKAVRCSH-- 172
Query: 208 AYLNSLAAALFNEMGLMPT---YLWCVPMFHCNGWCLTWAVA-AQGGTNVCQRTVNAKEI 263
L AL GL Y+ +P+FH N WA A A G +A
Sbjct: 173 GRLAFAGRALTERFGLTRDDVCYV-SMPLFHSNAVMAGWAPAVASGAAVALPAKFSASGF 231
Query: 264 FDNITRHKVTHF 275
D++ R+ T+F
Sbjct: 232 LDDVRRYGATYF 243
|
Length = 540 |
| >gnl|CDD|223952 COG1021, EntE, Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 86.7 bits (215), Expect = 4e-19
Identities = 73/272 (26%), Positives = 105/272 (38%), Gaps = 26/272 (9%)
Query: 12 VPLTPISFLERSAVVYRDRPSVVYGDVQYTWKETHQRCVKLASGLAHLGISPGDVVAALA 71
LT I L A Y DR +V+ G+ + ++ E QR +LA+GL LGI PGD V
Sbjct: 28 RTLTDI--LTDHAARYPDRIAVIDGERRLSYAELDQRADRLAAGLRRLGIKPGDTVLVQL 85
Query: 72 PNVPAMYELHFGVPMAGA--VLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAF 129
PNV Y F + G VL + H ++ + EA ++ V Q F
Sbjct: 86 PNVAEFYITFFALLRLGVAPVLALPS--HRASELGAFASQIEAALLIVARQHSGFDYRPF 143
Query: 130 --EILSKTSAKLPLLVLVPECGEPVSTVASSSGNLEYESLLAIGKLREVRRPKDECDPIA 187
E+++K L +++ E P A +L L P D +
Sbjct: 144 ARELVAK-HPTLRHVIVAGEAEHPSVLEA---------ALCHPAGLFTPAPPADAGEVAF 193
Query: 188 LNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPTYLWCVPMFH-----CNGWCLT 242
+ GTT +PK + +H Y + A+A YL +P H G
Sbjct: 194 FQLSGGTTGTPKLIPRTHNDYYYSVRASAEICGFDQQTVYLCALPAAHNFPLSSPG---A 250
Query: 243 WAVAAQGGTNVCQRTVNAKEIFDNITRHKVTH 274
V GGT V + + F I RH VT
Sbjct: 251 LGVFLAGGTVVLAPDPSPELCFPLIERHGVTV 282
|
Length = 542 |
| >gnl|CDD|215464 PLN02860, PLN02860, o-succinylbenzoate-CoA ligase | Back alignment and domain information |
|---|
Score = 86.4 bits (214), Expect = 6e-19
Identities = 76/277 (27%), Positives = 105/277 (37%), Gaps = 26/277 (9%)
Query: 14 LTPISFLERSAVVYRDRPSVVYGDVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPN 73
LT ++ L +AVV + G+ + T E + LA+GL LG+ GDVVA A N
Sbjct: 13 LTRLATLRGNAVV------TISGNRRRTGHEFVDGVLSLAAGLLRLGLRNGDVVAIAALN 66
Query: 74 VPAMYELHFGVPMAGAVLCTLNTR-----HDSAMVSVLLRHSEAKIIFVDYQLLPIAQGA 128
E V AG ++ LN R SAM+ V ++ D +
Sbjct: 67 SDLYLEWLLAVACAGGIVAPLNYRWSFEEAKSAMLLV-----RPVMLVTDET---CSSWY 118
Query: 129 FEILSKTSAKLPLLVLVPECGEPVSTVASSSGNLEYESLLAIGK--LREVRRPKDECDPI 186
E+ + L V + V +S E A+G L P D
Sbjct: 119 EELQNDRLPSLMWQVFLESPSSSVFIFLNSFLTTEMLKQRALGTTELDYAWAPDD----A 174
Query: 187 AL-NYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPTYLWCVPMFHCNGWCLTWAV 245
L +TSGTT PKGV SH + SLA G YL P+ H G A+
Sbjct: 175 VLICFTSGTTGRPKGVTISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLSSALAM 234
Query: 246 AAQGGTNVCQRTVNAKEIFDNITRHKVTHFGGAPTVL 282
G +V +AK I +H VT P ++
Sbjct: 235 LMVGACHVLLPKFDAKAALQAIKQHNVTSMITVPAMM 271
|
Length = 563 |
| >gnl|CDD|235146 PRK03640, PRK03640, O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 85.8 bits (213), Expect = 1e-18
Identities = 63/251 (25%), Positives = 100/251 (39%), Gaps = 42/251 (16%)
Query: 29 DRPSVVYGDVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAG 88
DR ++ + + + T+ E H+ V +A LA LG+ GD VA L N M + + G
Sbjct: 17 DRTAIEFEEKKVTFMELHEAVVSVAGKLAALGVKKGDRVALLMKNGMEMILVIHALQQLG 76
Query: 89 AVLCTLNTRHDSAMVSVLLRHSEAKIIFVD----YQLLPIAQGAFEILSKTSAKLPLLVL 144
AV LNTR + L +E K + D +L+P F L + +
Sbjct: 77 AVAVLLNTRLSREELLWQLDDAEVKCLITDDDFEAKLIPGISVKFAELMNGPKEEA--EI 134
Query: 145 VPECGEPVSTVASSSGNLEYESLLAIGKLREVRRPKDECDPIALNYTSGTTSSPKGVICS 204
E + VA+ + YTSGTT PKGVI +
Sbjct: 135 QEEF--DLDEVAT------------------------------IMYTSGTTGKPKGVIQT 162
Query: 205 HRGAYLNSLAAALFNEMGLMP--TYLWCVPMFHCNGWCLTWAVAAQGGTNVCQRTVNAKE 262
+ + +++ +AL +GL +L VP+FH +G + G V +A++
Sbjct: 163 YGNHWWSAVGSAL--NLGLTEDDCWLAAVPIFHISGLSILMRSVIYGMRVVLVEKFDAEK 220
Query: 263 IFDNITRHKVT 273
I + VT
Sbjct: 221 INKLLQTGGVT 231
|
Length = 483 |
| >gnl|CDD|236235 PRK08314, PRK08314, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 85.8 bits (213), Expect = 1e-18
Identities = 71/297 (23%), Positives = 119/297 (40%), Gaps = 39/297 (13%)
Query: 12 VPLTPISF-LERSAVVYRDRPSVVYGDVQYTWKETHQRCVKLASGLAH-LGISPGDVVAA 69
+P T + LE SA Y D+ ++V+ +++E + +LA L G+ GD V
Sbjct: 7 LPETSLFHNLEVSARRYPDKTAIVFYGRAISYRELLEEAERLAGYLQQECGVRKGDRVLL 66
Query: 70 LAPNVPAMYELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAF 129
N P ++ + A AV+ +N + ++ + S A++ V +L P A
Sbjct: 67 YMQNSPQFVIAYYAILRANAVVVPVNPMNREEELAHYVTDSGARVAIVGSELAPKVAPAV 126
Query: 130 EIL---------------SKTSAKLPLLVLVPECGEPVSTVASSSGNLEYESLLAIGKL- 173
L ++ +P + EP + G + ++ LA G
Sbjct: 127 GNLRLRHVIVAQYSDYLPAEPEIAVPAWLRA----EPPLQALAPGGVVAWKEALAAGLAP 182
Query: 174 --REVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPTYLWCV 231
P D L YTSGTT PKG + +HR N++ + L++ L +
Sbjct: 183 PPHTAG-PDDLA---VLPYTSGTTGVPKGCMHTHRTVMANAVGSVLWSNSTPESVVLAVL 238
Query: 232 PMFHCNGW--CLTWAVAAQGGTNVC----QRTVNAKEIFDNITRHKVTHFGGAPTVL 282
P+FH G + + A G T V R A I R++VTH+ PT++
Sbjct: 239 PLFHVTGMVHSMNAPIYA-GATVVLMPRWDREAAA----RLIERYRVTHWTNIPTMV 290
|
Length = 546 |
| >gnl|CDD|169098 PRK07786, PRK07786, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 84.8 bits (210), Expect = 2e-18
Identities = 70/261 (26%), Positives = 99/261 (37%), Gaps = 23/261 (8%)
Query: 20 LERSAVVYRDRPSVVYGDVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYE 79
L R A++ D P++ + TW+E R LA L+ G+ GD V L N E
Sbjct: 23 LARHALMQPDAPALRFLGNTTTWRELDDRVAALAGALSRRGVGFGDRVLILMLNRTEFVE 82
Query: 80 LHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKL 139
M GA+ +N R ++ L+ A ++ + L P+A +I +
Sbjct: 83 SVLAANMLGAIAVPVNFRLTPPEIAFLVSDCGAHVVVTEAALAPVATAVRDI-------V 135
Query: 140 PLLVLVPECGEPVSTVASSSGNLEYESLLAIGKLREVRRPKD--ECDPIALNYTSGTTSS 197
PLL V G +S L YE LLA + P D P + YTSGTT
Sbjct: 136 PLLSTVVVAGG-----SSDDSVLGYEDLLA--EAGPAHAPVDIPNDSPALIMYTSGTTGR 188
Query: 198 PKGVICSHRGAYLNSLAAALFNEMGLMPTY---LWCVPMFHCNGWCLTWAVAAQGGTNVC 254
PKG + +H A L A G VP+FH G G V
Sbjct: 189 PKGAVLTH--ANLTGQAMTCLRTNGADINSDVGFVGVPLFHIAGIGSMLPGLLLGAPTVI 246
Query: 255 QRT--VNAKEIFDNITRHKVT 273
+ ++ D + KVT
Sbjct: 247 YPLGAFDPGQLLDVLEAEKVT 267
|
Length = 542 |
| >gnl|CDD|213287 cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP ligase | Back alignment and domain information |
|---|
Score = 85.0 bits (211), Expect = 2e-18
Identities = 71/279 (25%), Positives = 100/279 (35%), Gaps = 53/279 (18%)
Query: 20 LERSAVVYRDRPSVVYGDVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYE 79
L +A + DR +VV G + T++E +LA+GL LGI PGD V PNV
Sbjct: 21 LAANAARHPDRTAVVDGPRRLTYRELDAAVDRLAAGLLALGIGPGDRVLVQLPNVAEFVI 80
Query: 80 LHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKL 139
L+F + GA+ H + + R SEAK + + A
Sbjct: 81 LYFALFKLGAIPVLALPAHRAHEIGHFARQSEAKAYIIADRFSGFDYAA----------- 129
Query: 140 PLLVLVPECGEPVSTVASSSGNLEYESLLAIGKLREVRRPKDECDPIAL-NYTSGTTSSP 198
LA RE+ +E +AL + GTT P
Sbjct: 130 ----------------------------LA----REL---LEELPDVALFQLSGGTTGLP 154
Query: 199 KGVICSHRGAYLNSLAAALFNEMGLMP--TYLWCVPMFH--CNGWCLTWAVAAQGGTNVC 254
K + +H ++ A+A GL P YL +P H GGT V
Sbjct: 155 KLIPRTHNDYLYSARASAE--ACGLDPGTVYLAVLPAAHNFTLSSPGLLGALLAGGTVVL 212
Query: 255 QRTVNAKEIFDNITRHKVTHFGGAPTVLNMIANAPPVFE 293
+ F I R KVTH P +LN+ A +
Sbjct: 213 HHPPSPDVAFPLIEREKVTHTALVPALLNLWLEAAEWDQ 251
|
2,3-dihydroxybenzoate-AMP ligase activates 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate. However, it can also catalyze the ATP-PPi exchange for 2,3-DHB analogs, such as salicyclic acid (o-hydrobenzoate), as well as 2,4-DHB and 2,5-DHB, but with less efficiency. Proteins in this family are the stand-alone adenylation components of non-ribosomal peptide synthases (NRPSs) involved in the biosynthesis of siderophores, which are low molecular weight iron-chelating compounds synthesized by many bacteria to aid in the acquisition of this vital trace elements. In Escherichia coli, the 2,3-dihydroxybenzoate-AMP ligase is called EntE, the adenylation component of the enterobactin NRPS system. Length = 483 |
| >gnl|CDD|180988 PRK07470, PRK07470, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 84.3 bits (209), Expect = 3e-18
Identities = 81/284 (28%), Positives = 116/284 (40%), Gaps = 32/284 (11%)
Query: 19 FLERSAVVYRDRPSVVYGDVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMY 78
FL ++A + DR ++V+GD +TW+E R LA+ LA G+ GD + + N M+
Sbjct: 12 FLRQAARRFPDRIALVWGDRSWTWREIDARVDALAAALAARGVRKGDRILVHSRNCNQMF 71
Query: 79 ELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAF-EILSKTSA 137
E F GAV N R V+ L S A+ + I F E + A
Sbjct: 72 ESMFAAFRLGAVWVPTNFRQTPDEVAYLAEASGARAM--------ICHADFPEHAAAVRA 123
Query: 138 KLPLLVLVPECGEPVSTVASSSGNLEYESLLAIGKLREVRRPK-DECDPIALNYTSGTTS 196
P L V G L+YE+L+A V D DP +TSGTT
Sbjct: 124 ASPDLTHVVAIGGA-------RAGLDYEALVARHLGARVANAAVDHDDPCWFFFTSGTTG 176
Query: 197 SPKGVICSHRGAYLNSLAAALFNEMG-LMP------TYLWCVPMFHCNGWCLTWAVAAQG 249
PK + +H +A + N + LMP L P+ H G VA G
Sbjct: 177 RPKAAVLTH-----GQMAFVITNHLADLMPGTTEQDASLVVAPLSHGAGIHQLCQVAR-G 230
Query: 250 GTNVC--QRTVNAKEIFDNITRHKVTHFGGAPTVLNMIANAPPV 291
V + E++ + RH+VT+ PT+L M+ P V
Sbjct: 231 AATVLLPSERFDPAEVWALVERHRVTNLFTVPTILKMLVEHPAV 274
|
Length = 528 |
| >gnl|CDD|236097 PRK07788, PRK07788, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 83.4 bits (207), Expect = 6e-18
Identities = 72/278 (25%), Positives = 107/278 (38%), Gaps = 31/278 (11%)
Query: 23 SAVVYRDRPSVVYGDVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHF 82
+A DR +++ T+ E ++ LA GL LG+ GD VA LA N +
Sbjct: 58 AARRAPDRAALIDERGTLTYAELDEQSNALARGLLALGVRAGDGVAVLARNHRGFVLALY 117
Query: 83 GVPMAGAVLCTLNTRHDSA---MVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKL 139
GA + LNT + + V R K + D + ++LS L
Sbjct: 118 AAGKVGARIILLNT--GFSGPQLAEVAARE-GVKALVYDDEFT-------DLLSALPPDL 167
Query: 140 PLLVLVPECGEPVSTVASSSGNLEYESLLAIGKLREVRRPKDECDPIALNYTSGTTSSPK 199
L + S+ L + L+A + +P + L TSGTT +PK
Sbjct: 168 GRLRAWGGNPDDDEPSGSTDETL--DDLIAGSSTAPLPKPPKPGGIVIL--TSGTTGTPK 223
Query: 200 GVICSHRGAYLNSLAAAL------FNEMGLMPTYLWCVPMFHCNGWCLTWAVA-AQGGTN 252
G L LA L E L+P PMFH GW +A A G T
Sbjct: 224 GAPRPEPSP-LAPLAGLLSRVPFRAGETTLLPA-----PMFHATGW-AHLTLAMALGSTV 276
Query: 253 VCQRTVNAKEIFDNITRHKVTHFGGAPTVLNMIANAPP 290
V +R + + ++I +HK T P +L+ I + P
Sbjct: 277 VLRRRFDPEATLEDIAKHKATALVVVPVMLSRILDLGP 314
|
Length = 549 |
| >gnl|CDD|180666 PRK06710, PRK06710, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 83.2 bits (205), Expect = 7e-18
Identities = 74/287 (25%), Positives = 123/287 (42%), Gaps = 16/287 (5%)
Query: 19 FLERSAVVYRDRPSVVYGDVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMY 78
++E+ A Y ++ ++ + T+ H + + A+ L LG+ GD VA + PN P
Sbjct: 29 YVEQMASRYPEKKALHFLGKDITFSVFHDKVKRFANYLQKLGVEKGDRVAIMLPNCPQAV 88
Query: 79 ELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIF-VDYQLLPIA--QGAFEILSKT 135
++G +AG ++ N + + L S AK+I +D + Q A +I
Sbjct: 89 IGYYGTLLAGGIVVQTNPLYTERELEYQLHDSGAKVILCLDLVFPRVTNVQSATKIEHVI 148
Query: 136 SAKLPLLVLVPE-CGEPVSTVASSSGNLEYESLLAIGKLREVRRPKDE-----CDP---- 185
++ + P+ P S+ ++ I V + + CDP
Sbjct: 149 VTRIADFLPFPKNLLYPFVQKKQSNLVVKVSESETIHLWNSVEKEVNTGVEVPCDPENDL 208
Query: 186 IALNYTSGTTSSPKGVICSHRGAYLNSLAAA--LFNEMGLMPTYLWCVPMFHCNGWCLTW 243
L YT GTT PKGV+ +H+ N+L L+N L +P FH G
Sbjct: 209 ALLQYTGGTTGFPKGVMLTHKNLVSNTLMGVQWLYNCKEGEEVVLGVLPFFHVYGMTAVM 268
Query: 244 AVA-AQGGTNVCQRTVNAKEIFDNITRHKVTHFGGAPTVLNMIANAP 289
++ QG V + K +F+ I +HKVT F GAPT+ + N+P
Sbjct: 269 NLSIMQGYKMVLIPKFDMKMVFEAIKKHKVTLFPGAPTIYIALLNSP 315
|
Length = 563 |
| >gnl|CDD|168698 PRK06839, PRK06839, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 81.8 bits (202), Expect = 2e-17
Identities = 57/273 (20%), Positives = 110/273 (40%), Gaps = 25/273 (9%)
Query: 19 FLERSAVVYRDRPSVVYGDVQYTWKETHQRCVKLASGLAH-LGISPGDVVAALAPNVPAM 77
++E+ A ++ DR +++ + + T+K+ H+ K+A+ L + L + G+ +A L+ N
Sbjct: 7 WIEKRAYLHPDRIAIITEEEEMTYKQLHEYVSKVAAYLIYELNVKKGERIAILSQNSLEY 66
Query: 78 YELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSA 137
L F + + LN R + L+ S ++FV+ A + +
Sbjct: 67 IVLLFAIAKVECIAVPLNIRLTENELIFQLKDSGTTVLFVEKTF---QNMALSMQKVSYV 123
Query: 138 KLPLLVLVPECGEPVSTVASSSGNLEYESLLAIGKLREVRRPKDECDPIALNYTSGTTSS 197
+ V ++ S + + + K+E + YTSGTT
Sbjct: 124 ------------QRVISITSLKEIEDRK--------IDNFVEKNESASFIICYTSGTTGK 163
Query: 198 PKGVICSHRGAYLNSLAAALFNEMGLMPTYLWCVPMFHCNGWCL-TWAVAAQGGTNVCQR 256
PKG + + + N+L ++ + + +P+FH G L + GG + R
Sbjct: 164 PKGAVLTQENMFWNALNNTFAIDLTMHDRSIVLLPLFHIGGIGLFAFPTLFAGGVIIVPR 223
Query: 257 TVNAKEIFDNITRHKVTHFGGAPTVLNMIANAP 289
+ I +HKVT G PT+ + N
Sbjct: 224 KFEPTKALSMIEKHKVTVVMGVPTIHQALINCS 256
|
Length = 496 |
| >gnl|CDD|211788 TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-forming), exosortase A-associated | Back alignment and domain information |
|---|
Score = 80.2 bits (198), Expect = 7e-17
Identities = 64/266 (24%), Positives = 103/266 (38%), Gaps = 14/266 (5%)
Query: 18 SFLERSAVVYRDRPSVVYGDVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAM 77
LE +A D ++V+ D T+ +R + LASGL LG++ G+ VA
Sbjct: 4 HLLEDAAARLPDATALVHHDRTLTYAALSERVLALASGLRGLGLARGERVAIYLDKRLET 63
Query: 78 YELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSA 137
FG +AG V +N + V+ +L ++ L + ++L
Sbjct: 64 VTAMFGAALAGGVFVPINPLLKAEQVAHILADCNVRL-------LVTSSERLDLLHPALP 116
Query: 138 KLPLLVLVPECGEPVSTVASSSGN--LEYESLLAIG-KLREVRRPKDECDPIALNYTSGT 194
L + G+P G + LLA+G D A+ YTSG+
Sbjct: 117 GCHDLRTLIIVGDPAHASEGHPGEEPASWPKLLALGDADPPHPVIDS--DMAAILYTSGS 174
Query: 195 TSSPKGVICSHRGAYLNSLAAALFNEMGLMPTYLWCVPM-FHCNGWCLTWAVAAQGGTNV 253
T PKGV+ SHR + + A + E L +P+ F LT A G T V
Sbjct: 175 TGRPKGVVLSHRNLVAGAQSVATYLENRPDDRLLAVLPLSFDYGFNQLTTAFYV-GATVV 233
Query: 254 CQRTVNAKEIFDNITRHKVTHFGGAP 279
+ +++ + +H +T P
Sbjct: 234 LHDYLLPRDVLKALEKHGITGLAAVP 259
|
This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system , specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present. Length = 517 |
| >gnl|CDD|215137 PLN02246, PLN02246, 4-coumarate--CoA ligase | Back alignment and domain information |
|---|
Score = 80.0 bits (198), Expect = 8e-17
Identities = 89/299 (29%), Positives = 126/299 (42%), Gaps = 42/299 (14%)
Query: 9 ANYVPLTPISFLERSAVVYRDRPSVVYGDV--QYTWKETHQRCVKLASGLAHLGISPGDV 66
N++PL F ER + + DRP ++ G YT+ + ++A+GL LGI GDV
Sbjct: 20 PNHLPLHDYCF-ERLSE-FSDRPCLIDGATGRVYTYADVELLSRRVAAGLHKLGIRQGDV 77
Query: 67 VAALAPNVPAMYELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQ 126
V L PN P G GAV T N + A ++ + S AK+I I Q
Sbjct: 78 VMLLLPNCPEFVLAFLGASRRGAVTTTANPFYTPAEIAKQAKASGAKLI--------ITQ 129
Query: 127 GAFEILSKTSAKLPLLVLVPECGEPVSTVAS-SSGNLEYESLLAI--GKLREVRRPKDEC 183
+ KL L + G V T+ G L + L +L EV D
Sbjct: 130 SCY------VDKLK--GLAEDDGVTVVTIDDPPEGCLHFSELTQADENELPEVEISPD-- 179
Query: 184 DPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPTYLW-------CV-PMFH 235
D +AL Y+SGTT PKGV+ +H+G L + A + G P + CV PMFH
Sbjct: 180 DVVALPYSSGTTGLPKGVMLTHKG--LVTSVAQQVD--GENPNLYFHSDDVILCVLPMFH 235
Query: 236 CNGWCLTWAVAAQ---GGTNVCQRTVNAKEIFDNITRHKVTHFGGAPTVLNMIANAPPV 291
+ L + G + + + I RHKVT P ++ IA +P V
Sbjct: 236 I--YSLNSVLLCGLRVGAAILIMPKFEIGALLELIQRHKVTIAPFVPPIVLAIAKSPVV 292
|
Length = 537 |
| >gnl|CDD|223951 COG1020, EntF, Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 80.0 bits (197), Expect = 9e-17
Identities = 61/292 (20%), Positives = 92/292 (31%), Gaps = 55/292 (18%)
Query: 13 PLTPISFLERSAVVYRDRPSVVYGDVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAP 72
LT E A D ++V G Q T+ E R +LA L LG+ PG+ VA LA
Sbjct: 226 RLTIHLLFEEQAATTPDAVALVRGGQQLTYAELDARANRLARLLISLGVGPGETVAILAD 285
Query: 73 NVPAMYELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEIL 132
+ V AGA L+ + + ++ +L S ++ L G
Sbjct: 286 RSLELVVALLAVLKAGAAYVPLDPLYPAERLAYILEDSRPTLLLTQAHLRVDDVG----- 340
Query: 133 SKTSAKLPLLVLVP----ECGEPVSTVASSSGNLEYESLLAIGKLREVRRPKDECDPIAL 188
LP L L A L Y +
Sbjct: 341 ------LPGLALDDALSEIPDTDPIPQALLGDALAY-----------------------I 371
Query: 189 NYTSGTTSSPKGVICSHRGA--YLNSLAAALFNE-----MGLMPTYLWCVPMFHCNGWCL 241
YTSG+T PKGV HR LN A + + L F + +
Sbjct: 372 IYTSGSTGQPKGVRIEHRALANLLNDAGARFGLDADDRVLALASLS------FDASVF-E 424
Query: 242 TWAVAAQGGTNV---CQRTVNAKEIFDNITRHKVTHFGGAPTVLNMIANAPP 290
+ +G V V+ + + + +T P +L ++ A
Sbjct: 425 IFGALLEGARLVLAPALLQVDPAALLELLEAQGITVLLLVPLLLRLLLLAAL 476
|
Length = 642 |
| >gnl|CDD|213312 cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and 4-Hydroxybenzoate-Coenzyme A Ligase (4-HBA-CoA ligase) | Back alignment and domain information |
|---|
Score = 78.5 bits (194), Expect = 2e-16
Identities = 61/266 (22%), Positives = 103/266 (38%), Gaps = 20/266 (7%)
Query: 29 DRPSVVYGDVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAG 88
D+ ++ Y D T+ E + + + L LGI + V + + P +G G
Sbjct: 20 DKIALYYDDGSLTYGELQEEVNRWGNALRELGIERENRVLLILLDTPEFPTAFWGAIKIG 79
Query: 89 AVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPEC 148
AV +NT L S A+++ + +L + + A + L +++V
Sbjct: 80 AVPVPINTLLTPDDYRYYLNDSRARVLVISEELWEVLKPALQKD----PHLRHVIVVGGA 135
Query: 149 GEPVSTVASSSGNLEYESLLAIGKLREVRRPKDECDPIAL-NYTSGTTSSPKGVICSHRG 207
G G L Y L+A E+ D +A Y+SG+T PKGV+ H
Sbjct: 136 GP---------GALSYAQLIA-TAAEELEAAATSADDMAFWLYSSGSTGRPKGVVHLHHD 185
Query: 208 AYLNSLAAALFNEMGLMP--TYLWCVPMFHCNGW--CLTWAVAAQGGTNVCQRTVNAKEI 263
+ + A A N +G+ +F G L + ++ T + +
Sbjct: 186 MLVTAEAYAK-NVLGITEDDVVFSAAKLFFAYGLGNGLYFPLSVGATTVLMPERPTPDAV 244
Query: 264 FDNITRHKVTHFGGAPTVLNMIANAP 289
F I R+K T F G PT+ + AP
Sbjct: 245 FATIERYKPTVFFGVPTLYAAMLAAP 270
|
Benzoate CoA ligase and 4-hydroxybenzoate-coenzyme A ligase catalyze the first activating step for benzoate and 4-hydroxybenzoate catabolic pathways, respectively. Although these two enzymes share very high sequence homology, they have their own substrate preference. The reaction proceeds via a two-step process; the first ATP-dependent step forms the substrate-AMP intermediate, while the second step forms the acyl-CoA ester, releasing the AMP. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Some bacteria can use benzoic acid or benzenoid compounds as the sole source of carbon and energy through degradation. Benzoate CoA ligase and 4-hydroxybenzoate-Coenzyme A ligase are key enzymes of this process. Length = 506 |
| >gnl|CDD|235531 PRK05605, PRK05605, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 78.1 bits (193), Expect = 4e-16
Identities = 82/301 (27%), Positives = 126/301 (41%), Gaps = 43/301 (14%)
Query: 20 LERSAVVYRDRPSVVYGDVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYE 79
+ + + DRP++ + T+ E ++ + A+GL LG+ PGD VA + PN P
Sbjct: 38 YDNAVARFGDRPALDFFGATTTYAELGKQVRRAAAGLRALGVRPGDRVAIVLPNCPQHIV 97
Query: 80 LHFGVPMAGAVLCTLN---TRHDSAMVSVLLRHS----EAKIIFVDYQLLPIAQG----- 127
+ V GAV+ N T H+ L H A++ V ++ P +
Sbjct: 98 AFYAVLRLGAVVVEHNPLYTAHE-------LEHPFEDHGARVAIVWDKVAPTVERLRRTT 150
Query: 128 ------------AFEILSKTSAKLPLLVLVPECGEPVSTVASSSGNLEYESLLA---IGK 172
A +L + + +LP+ L + G + +E+L+ G
Sbjct: 151 PLETIVSVNMIAAMPLLQRLALRLPIPALRKARAA---LTGPAPGTVPWETLVDAAIGGD 207
Query: 173 LREVRRPKDECDPIAL-NYTSGTTSSPKGVICSHRGAYLNSLAA-ALFNEMGLMP-TYLW 229
+V P+ D +AL YTSGTT PKG +HR + N+ A +G P L
Sbjct: 208 GSDVSHPRPTPDDVALILYTSGTTGKPKGAQLTHRNLFANAAQGKAWVPGLGDGPERVLA 267
Query: 230 CVPMFHCNG--WCLTWAVAAQGGTNVCQRTVNAKEIFDNITRHKVTHFGGAPTVLNMIAN 287
+PMFH G CLT AV+ GG V + I D + +H T G P + IA
Sbjct: 268 ALPMFHAYGLTLCLTLAVSI-GGELVLLPAPDIDLILDAMKKHPPTWLPGVPPLYEKIAE 326
Query: 288 A 288
A
Sbjct: 327 A 327
|
Length = 573 |
| >gnl|CDD|235731 PRK06188, PRK06188, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 76.9 bits (190), Expect = 8e-16
Identities = 67/278 (24%), Positives = 104/278 (37%), Gaps = 40/278 (14%)
Query: 27 YRDRPSVVYGDVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPM 86
Y DRP++V GD + T+ + R + LG+ GD VA L+ N P V M
Sbjct: 25 YPDRPALVLGDTRLTYGQLADRISRYIQAFEALGLGTGDAVALLSLNRPE-------VLM 77
Query: 87 AGAVLCTLNTRH----------DSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTS 136
A R D A V L + + VD P + A +L++
Sbjct: 78 AIGAAQLAGLRRTALHPLGSLDDHAYV---LEDAGISTLIVDPA--PFVERALALLARVP 132
Query: 137 AKLPLLVLVP-ECGEPVSTVASSSGNLEYESLLAIGKLREVRRPKDECDPIALNYTSGTT 195
+ +L L P G + A+ G + D L YT GTT
Sbjct: 133 SLKHVLTLGPVPDGVDLLAAAAKFGP------------APLVAAALPPDIAGLAYTGGTT 180
Query: 196 SSPKGVICSHRGAYLNSLAAALFNEMGL--MPTYLWCVPMFHCNGWCLTWAVAAQGGTNV 253
PKGV+ +HR + ++A E P +L C P+ H G +GGT +
Sbjct: 181 GKPKGVMGTHRS--IATMAQIQLAEWEWPADPRFLMCTPLSHAGG-AFFLPTLLRGGTVI 237
Query: 254 CQRTVNAKEIFDNITRHKVTHFGGAPTVLNMIANAPPV 291
+ E+ I ++T PT++ + + P +
Sbjct: 238 VLAKFDPAEVLRAIEEQRITATFLVPTMIYALLDHPDL 275
|
Length = 524 |
| >gnl|CDD|213271 cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA ligase (also called cyclohex-1-ene-1-carboxylate:CoA ligase) | Back alignment and domain information |
|---|
Score = 76.5 bits (189), Expect = 1e-15
Identities = 59/258 (22%), Positives = 89/258 (34%), Gaps = 65/258 (25%)
Query: 39 QYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAGAVLCTLNTRH 98
+ T+ E +LA+ LA LG+ PGDVVA PN ++ GAV
Sbjct: 1 RLTYGELDDAADRLAAALAELGVRPGDVVAFQLPNWWEFVVVYLACARIGAV-------- 52
Query: 99 DSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVASS 158
+ ++ + E ++ F IL + A++ + VP
Sbjct: 53 ---INPIVPIYRERELGF--------------ILRQARARV---LFVP------------ 80
Query: 159 SGNLEYESLLAIGKLREVRRPKDECDPIA-LNYTSGTTSSPKGVICSHRGAYLNSLAAAL 217
+ R D +A L YTSGTT PKGV+ +H +
Sbjct: 81 ------------DEFRGFDYA-AMPDDVALLLYTSGTTGEPKGVMHTHNTLLAEVRSYVE 127
Query: 218 FNEMG-----LMPTYLWCVPMFHCNGWCLTWAVA-AQGGTNVCQRTVNAKEIFDNITRHK 271
+ LMP+ P+ H G+ + G T V Q + + I H
Sbjct: 128 RLGLTPDDVVLMPS-----PLAHITGFLYGLELPLLLGATVVLQDRWDPARALELIREHG 182
Query: 272 VTHFGGAPTVLNMIANAP 289
VT GA L + A
Sbjct: 183 VTFTMGATPFLADLLAAA 200
|
Cyclohexanecarboxylate-CoA ligase activates the aliphatic ring compound, cyclohexanecarboxylate, for degradation. It catalyzes the synthesis of cyclohexanecarboxylate-CoA thioesters in a two-step reaction involving the formation of cyclohexanecarboxylate-AMP anhydride, followed by the nucleophilic substitution of AMP by CoA. Length = 437 |
| >gnl|CDD|236043 PRK07529, PRK07529, AMP-binding domain protein; Validated | Back alignment and domain information |
|---|
Score = 76.1 bits (188), Expect = 2e-15
Identities = 78/312 (25%), Positives = 121/312 (38%), Gaps = 39/312 (12%)
Query: 4 MIRCSANYVPLTP-ISFLERSAVVYRDRPSVVYGDVQYTWKETHQRCVKLASGLAHLGIS 62
++ +A P P +SFL + + T+ E + A+ L LG+
Sbjct: 30 LLSRAAARHPDAPALSFLLDAD---PLDRPETW-----TYAELLADVTRTANLLHSLGVG 81
Query: 63 PGDVVAALAPNVPAMYELHF---GVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDY 119
PGDVVA L PN+P E HF G AG +N + ++ LLR + AK++ V
Sbjct: 82 PGDVVAFLLPNLP---ETHFALWGGEAAGIA-NPINPLLEPEQIAELLRAAGAKVL-VTL 136
Query: 120 QLLP---IAQGAFEILSKTSAKLPLLV------LVPECGEPVSTVASSSGN--LEYESLL 168
P I Q E+L+ ++ L V + + L++++ L
Sbjct: 137 GPFPGTDIWQKVAEVLAALPELRTVVEVDLARYLPGPKRLAVPLIRRKAHARILDFDAEL 196
Query: 169 A--IGKLREVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPT 226
A G RP D A +T GTT PK +H N+ AL +G T
Sbjct: 197 ARQPGDRLFSGRPIGPDDVAAYFHTGGTTGMPKLAQHTHGNEVANAWLGALLLGLGPGDT 256
Query: 227 YLWCVPMFHCNGWCLTWAVA--AQGGTNVCQRTVNAK--EIFDN----ITRHKVTHFGGA 278
+P+FH N L +A A+G V + + N + R+++ G
Sbjct: 257 VFCGLPLFHVNA-LLVTGLAPLARGAHVVLATPQGYRGPGVIANFWKIVERYRINFLSGV 315
Query: 279 PTVLNMIANAPP 290
PTV + P
Sbjct: 316 PTVYAALLQVPV 327
|
Length = 632 |
| >gnl|CDD|162605 TIGR01923, menE, O-succinylbenzoate-CoA ligase | Back alignment and domain information |
|---|
Score = 75.6 bits (186), Expect = 2e-15
Identities = 56/250 (22%), Positives = 86/250 (34%), Gaps = 38/250 (15%)
Query: 41 TWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAGAVLCTLNTRHDS 100
TW++ LA L GI G VA + N M L + GA + LNTR
Sbjct: 1 TWQDLDCEAAHLAKALKAQGIRSGSRVALVGQNSIEMVLLLHACLLLGAEIAMLNTRLTE 60
Query: 101 AMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVASSSG 160
+ L + +++ D LL + L + A S AS +
Sbjct: 61 NERTNQLEDLDVQLLLTD-SLLEEKDFQADSLDRIEAAGR---------YETSLSASFNM 110
Query: 161 NLEYESLLAIGKLREVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNE 220
+ L +TSGTT PK V + R Y + A
Sbjct: 111 D----------------------QIATLMFTSGTTGKPKAVPHTFRNHYAS--AVGSKEN 146
Query: 221 MGLMPTYLWCV--PMFHCNGWCLTWAVAAQGGTNVCQRTVNAKEIFDNITRHKVTHFGGA 278
+G W + P++H +G + + +G T N + + I +VTH
Sbjct: 147 LGFTEDDNWLLSLPLYHISGLSILFRWLIEGATLRIVDKFNQ--LLEMIANERVTHISLV 204
Query: 279 PTVLNMIANA 288
PT LN + +
Sbjct: 205 PTQLNRLLDE 214
|
This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 436 |
| >gnl|CDD|181195 PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 75.5 bits (186), Expect = 2e-15
Identities = 63/260 (24%), Positives = 113/260 (43%), Gaps = 24/260 (9%)
Query: 21 ERSAVVYRDRPSVVYGDVQ-YTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYE 79
++A+++ G V+ Y++ E ++ + A+ LGI GD VA N P
Sbjct: 22 HKTALIFESSG----GVVRRYSYLELNEEINRTANLFYSLGIRKGDKVALHLDNCPEFIF 77
Query: 80 LHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKL 139
FG+ GA++ +N R + +L++S+A ++ Q P+ + +I + + L
Sbjct: 78 CWFGLAKIGAIMVPINARLLREESAWILQNSQASLLVTSAQFYPMYR---QIQQEDATPL 134
Query: 140 PLLVLVPECGEPVSTVASSSGNLEYESLLAIGKLREVRRPKDECDPIALNYTSGTTSSPK 199
+ L V+S + + L P D + +TSGTTS PK
Sbjct: 135 RHICLTRVALPADDGVSSFTQLKAQQP----ATLCY-APPLSTDDTAEILFTSGTTSRPK 189
Query: 200 GVICSHR----GAYLNSLAAALFNEMGLMPTYLWCVPMFHCNGWCLTWAVAA--QGGTNV 253
GV+ +H Y ++ AL ++ YL +P FH + C T A+AA G T V
Sbjct: 190 GVVITHYNLRFAGYYSAWQCALRDD----DVYLTVMPAFHIDCQC-TAAMAAFSAGATFV 244
Query: 254 CQRTVNAKEIFDNITRHKVT 273
+A+ + + +++ T
Sbjct: 245 LLEKYSARAFWGQVCKYRAT 264
|
Length = 517 |
| >gnl|CDD|213300 cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 74.9 bits (185), Expect = 3e-15
Identities = 36/121 (29%), Positives = 53/121 (43%), Gaps = 8/121 (6%)
Query: 183 CDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMP--TYLWCVPMFHCNGWC 240
D A+ YTSGTT PKGV+ +H A L A +GL P L +P+FH N
Sbjct: 81 VDTAAILYTSGTTGPPKGVLLTH--AQLLFAARLAARLLGLRPDDVLLTPLPLFHINAQA 138
Query: 241 LT-WAVAAQGGTNVCQRTVNAKEIFDNITRHKVTHFGGAPTVLNMIANAPP---VFENRF 296
+ +A G T V +A +D + +H T F + ++ PP ++
Sbjct: 139 YSVYAALLVGATLVLLPRFSASRFWDQVRKHGATVFNLLGAMAAILMKQPPSPDDRDHPL 198
Query: 297 R 297
R
Sbjct: 199 R 199
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Members of this family include DitJ from Pseudomonas and similar proteins. Length = 421 |
| >gnl|CDD|236120 PRK07867, PRK07867, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 75.1 bits (185), Expect = 4e-15
Identities = 63/271 (23%), Positives = 101/271 (37%), Gaps = 37/271 (13%)
Query: 29 DRPSVVYGDVQYTWKETHQRCVKLASGLAHLGISPGDV--VAALAPNVPAMYELHFGVPM 86
D + + D +W+E + A+ L + P V L N P L +
Sbjct: 18 DDRGLYFEDSFTSWREHIRGSAARAAALRAR-LDPTRPPHVGVLLDNTPEFSLLLGAAAL 76
Query: 87 AGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVP 146
+G V LN A ++ + H++ +++ + + G
Sbjct: 77 SGIVPVGLNPTRRGAALARDIAHADCQLVLTESAHAELLDGL------------------ 118
Query: 147 ECGEPVSTVASSSGNLEYESLLAIGKLREVRRPK-DECDPIALNYTSGTTSSPKGVICSH 205
+ G V V S + LA + E D D L +TSGT+ PK V C+H
Sbjct: 119 DPGVRVINVDSP----AWADELAAHRDAEPPFRVADPDDLFMLIFTSGTSGDPKAVRCTH 174
Query: 206 RGAYLNSLAAALFNEMGLMPT---YLWCVPMFHCNGWCLTWAVA-AQGGTNVCQRTVNAK 261
R + S L GL P Y+ +P+FH N WAVA A G + +R +A
Sbjct: 175 R--KVASAGVMLAQRFGLGPDDVCYV-SMPLFHSNAVMAGWAVALAAGASIALRRKFSAS 231
Query: 262 EIFDNITRHKVTHFG--GAPTVLNMIANAPP 290
++ R+ T+ G P L+ + P
Sbjct: 232 GFLPDVRRYGATYANYVGKP--LSYVLATPE 260
|
Length = 529 |
| >gnl|CDD|213298 cd05932, LC_FACS_bac, Bacterial long-chain fatty acid CoA synthetase (LC-FACS), including Marinobacter hydrocarbonoclasticus isoprenoid Coenzyme A synthetase | Back alignment and domain information |
|---|
Score = 74.6 bits (184), Expect = 5e-15
Identities = 55/191 (28%), Positives = 86/191 (45%), Gaps = 17/191 (8%)
Query: 38 VQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAGAVLCTLNTR 97
+YTW + + ++A+ L LG+ PGD +A L+ N + MAG V L
Sbjct: 5 HEYTWAQVADQARRIAAALQSLGLEPGDRIAILSKNCAEWIIADLAIWMAGHVSVPLYPT 64
Query: 98 HDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVAS 157
+ + +L HS+AK +FV G + A +P + P ST+
Sbjct: 65 LTAETIRYVLEHSDAKALFV---------GKLDDWDAMKAGVPEGLPTI-ILFPYSTL-- 112
Query: 158 SSGNLEYESLLAIGK-LREVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAA 216
+ +++ LLA + L+ P+ E D + YTSGTT PKGV+ S GA+ + A
Sbjct: 113 -KDHYKWDDLLAATEPLQGRPLPEPE-DLATIVYTSGTTGQPKGVMLSF-GAFAFA-AQG 168
Query: 217 LFNEMGLMPTY 227
+GL P
Sbjct: 169 TIEIIGLTPND 179
|
The members of this family are bacterial long-chain fatty acid CoA synthetase. Marinobacter hydrocarbonoclasticus isoprenoid Coenzyme A synthetase in this family is involved in the synthesis of isoprenoid wax ester storage compounds when grown on phytol as the sole carbon source. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 504 |
| >gnl|CDD|215312 PLN02574, PLN02574, 4-coumarate--CoA ligase-like | Back alignment and domain information |
|---|
Score = 73.7 bits (181), Expect = 1e-14
Identities = 66/252 (26%), Positives = 100/252 (39%), Gaps = 37/252 (14%)
Query: 47 QRCVK-LASGLAH-LGISPGDVVAALAPNVPAMYELHFGVPMAGAVLCTLNTRHDSAMVS 104
Q VK +A+GL H +G+ GDVV L PN + V G ++ T+N +
Sbjct: 73 QPLVKSMAAGLYHVMGVRQGDVVLLLLPNSVYFPVIFLAVLSLGGIVTTMNPSSSLGEIK 132
Query: 105 VLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLL----VLVPECGEPVSTVASSSG 160
+ + F + KL L + VPE + S
Sbjct: 133 KRVVDCSVGLAFTS--------------PENVEKLSPLGVPVIGVPENYDFDS---KRIE 175
Query: 161 NLEYESLLAIGKLREVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLA------ 214
++ L+ + + D A+ Y+SGTT + KGV+ +HR N +A
Sbjct: 176 FPKFYELIKEDFDFVPKPVIKQDDVAAIMYSSGTTGASKGVVLTHR----NLIAMVELFV 231
Query: 215 ---AALFNEMGLMPTYLWCVPMFHCNGWCL-TWAVAAQGGTNVCQRTVNAKEIFDNITRH 270
A+ + G YL +PMFH G L + + G T V R +A ++ I R
Sbjct: 232 RFEASQYEYPGSDNVYLAALPMFHIYGLSLFVVGLLSLGSTIVVMRRFDASDMVKVIDRF 291
Query: 271 KVTHFGGAPTVL 282
KVTHF P +L
Sbjct: 292 KVTHFPVVPPIL 303
|
Length = 560 |
| >gnl|CDD|213275 cd05907, VL_LC_FACS_like, Long-chain fatty acid CoA synthetases and Bubblegum-like very long-chain fatty acid CoA synthetases | Back alignment and domain information |
|---|
Score = 72.9 bits (180), Expect = 2e-14
Identities = 29/79 (36%), Positives = 41/79 (51%)
Query: 40 YTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAGAVLCTLNTRHD 99
TW E +R +LA+GL LG+ PGD VA LA N P + AGAV +
Sbjct: 6 ITWAELAERVRRLAAGLIALGVKPGDRVAILAENRPEWVIADLAILAAGAVPVPIYPTSS 65
Query: 100 SAMVSVLLRHSEAKIIFVD 118
V+ +L S A+++FV+
Sbjct: 66 PEEVAYILNDSGARVVFVE 84
|
This family includes long-chain fatty acid (C12-C20) CoA synthetases and Bubblegum-like very long-chain (>C20) fatty acid CoA synthetases. FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Eukaryotes generally have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Drosophila melanogaster mutant bubblegum (BGM) have elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene later named bubblegum. The human homolog (hsBG) of bubblegum has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 456 |
| >gnl|CDD|213306 cd05940, FATP_FACS, Fatty acid transport proteins (FATP) play dual roles as fatty acid transporters and its activation enzymes | Back alignment and domain information |
|---|
Score = 71.9 bits (177), Expect = 3e-14
Identities = 36/112 (32%), Positives = 54/112 (48%), Gaps = 9/112 (8%)
Query: 184 DPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPT----YLWCVPMFHCNGW 239
DP YTSGTT PK I SHR A A+F +GL+ YL C+P++H N
Sbjct: 82 DPAFYIYTSGTTGLPKAAIMSHRRWL---RAGAVFGGLGLLKPDDVLYL-CLPLYHSNAL 137
Query: 240 CLTWAVA-AQGGTNVCQRTVNAKEIFDNITRHKVTHFGGAPTVLNMIANAPP 290
+ W+ A A G + +R +A + + ++ R+ T F + + N P
Sbjct: 138 TVGWSSALAAGASLALRRKFSASQFWPDVRRYGATAFQYVGELCRYLLNQPE 189
|
Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. At least five copies of FATPs are identified in mammalian cells. This family also includes prokaryotic FATPs. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 444 |
| >gnl|CDD|172019 PRK13382, PRK13382, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 72.1 bits (177), Expect = 3e-14
Identities = 74/317 (23%), Positives = 110/317 (34%), Gaps = 59/317 (18%)
Query: 13 PLTPISFLERSAVVYR-----------------DRPSVVYGDVQYTWKETHQRCVKLASG 55
P+ P +L A + R DRP ++ TW+E +R LA+
Sbjct: 25 PMRPDRYLRIVAAMRREGMGPTSGFAIAAQRCPDRPGLIDELGTLTWRELDERSDALAAA 84
Query: 56 LAHLGISPGDVVAALAPNVPAMYELHFGVPMA-------GAVLCTLNTRHDSAMVSVLLR 108
L L I VV + N H G A GA + LNT ++ ++
Sbjct: 85 LQALPIGEPRVVGIMCRN-------HRGFVEALLAANRIGADILLLNTSFAGPALAEVVT 137
Query: 109 HSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVA--SSSGNLEYES 166
+ D + A +C + VA +L E
Sbjct: 138 REGVDTVIYDEEFSATVDRALA----------------DCPQATRIVAWTDEDHDLTVEV 181
Query: 167 LLAI-GKLREVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLM- 224
L+A R + + I L TSGTT +PKG S G A+ +
Sbjct: 182 LIAAHAGQRPEPTGR-KGRVILL--TSGTTGTPKGARRSGPGGIGT--LKAILDRTPWRA 236
Query: 225 --PTYLWCVPMFHCNGWCLTWAVAAQGGTNVCQRTVNAKEIFDNITRHKVTHFGGAPTVL 282
PT + PMFH G+ A+ T V +R + + D I RH+ T P +
Sbjct: 237 EEPTVI-VAPMFHAWGFSQLVLAASLACTIVTRRRFDPEATLDLIDRHRATGLAVVPVMF 295
Query: 283 NMIANAPPVFENRFRGR 299
+ I + P NR+ GR
Sbjct: 296 DRIMDLPAEVRNRYSGR 312
|
Length = 537 |
| >gnl|CDD|235722 PRK06164, PRK06164, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 70.2 bits (172), Expect = 2e-13
Identities = 72/273 (26%), Positives = 95/273 (34%), Gaps = 41/273 (15%)
Query: 24 AVVYRDRPSVVYGDVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFG 83
AV D + + E +LA+ LA G+ GD VA PN L
Sbjct: 26 AVALIDEDRPL------SRAELRALVDRLAAWLAAQGVRRGDRVAVWLPNCIEWVVLFLA 79
Query: 84 VPMAGAVLCTLNTRHDSAMVSVLLRHSEA----------KIIF------VDYQLLPIAQG 127
GA + +NTR+ S V+ +L A I F V LP +
Sbjct: 80 CARLGATVIAVNTRYRSHEVAHILGRGRARWLVVWPGFKGIDFAAILAAVPPDALPPLRA 139
Query: 128 AFEILSKTSAKLPLLVLVPECGEPVSTVASSSGNLEYESLLAIGKLREVRRPKDECDPIA 187
++ + P P G V A A G+ R D
Sbjct: 140 IA-VVDDAADATP----APAPGARVQLFALPDP----APPAAAGE-----RAADPDAGAL 185
Query: 188 LNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMP--TYLWCVPMFHCNGWCLTWAV 245
L TSGTTS PK V+ HR A L A A+ G P L +P G+
Sbjct: 186 LFTTSGTTSGPKLVL--HRQATLLRHARAIARAYGYDPGAVLLAALPFCGVFGFSTLLGA 243
Query: 246 AAQGGTNVCQRTVNAKEIFDNITRHKVTH-FGG 277
A G VC+ +A + RH+VTH FG
Sbjct: 244 LAGGAPLVCEPVFDAARTARALRRHRVTHTFGN 276
|
Length = 540 |
| >gnl|CDD|233807 TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP ligase | Back alignment and domain information |
|---|
Score = 69.0 bits (169), Expect = 4e-13
Identities = 64/266 (24%), Positives = 101/266 (37%), Gaps = 20/266 (7%)
Query: 13 PLTPISFLERSAVVYRDRPSVVYGDVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAP 72
PLT I L A Y D +++ G+ Q++++E QR LA+GL LGI GD P
Sbjct: 24 PLTDI--LRDQAARYPDAIAIICGNRQWSYRELDQRADNLAAGLTKLGIKQGDTAVVQLP 81
Query: 73 NVPAMYELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEIL 132
N+ Y + F + G H + ++ E + +D F
Sbjct: 82 NIAEFYIVFFALLKLGVAPVLALFSHRKSELTAYASQIEPALYIIDRAHSLFDYDDF--A 139
Query: 133 SKTSAKLPLLVLVPECGEPVSTVASSSGNLEYESLLAIGKLREVRRPKDECDPIA-LNYT 191
+ +KLP L + G+ + L ES K + D +A +
Sbjct: 140 RQLQSKLPTLRNIIVAGQTG----EAELFLWLESPAEPVKFPPTK-----SDEVAFFQLS 190
Query: 192 SGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPTYLWCVPMFHCNGWCLT----WAVAA 247
G+T +PK + +H Y + + + YL +P H + L+ V
Sbjct: 191 GGSTGTPKLIPRTHNDYYYSVRRSVEICWLTQQTRYLCALPAAH--NYPLSSPGALGVFY 248
Query: 248 QGGTNVCQRTVNAKEIFDNITRHKVT 273
GG V + + F I RHKVT
Sbjct: 249 AGGCVVLAPDPSPTDCFPLIERHKVT 274
|
Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB [Transport and binding proteins, Cations and iron carrying compounds]. Length = 526 |
| >gnl|CDD|213270 cd04433, AFD_class_I, Adenylate forming domain, Class I | Back alignment and domain information |
|---|
Score = 68.1 bits (167), Expect = 4e-13
Identities = 38/111 (34%), Positives = 51/111 (45%), Gaps = 6/111 (5%)
Query: 184 DPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMP--TYLWCVPMFHCNG-WC 240
DP + YTSGTT PKGV+ SHR L + A AL +GL L +P+FH G
Sbjct: 1 DPAFILYTSGTTGKPKGVVLSHRN--LLANAQALAQAIGLTEGDVLLSVLPLFHVVGGGS 58
Query: 241 LTWAVAAQGGTNVCQRTVN-AKEIFDNITRHKVTHFGGAPTVLNMIANAPP 290
GGT V + I +++VT G PT+ + +A A
Sbjct: 59 GLLGALLAGGTVVLYEGFPFPLSFLELIEQYRVTVLFGVPTLYDALAKAAE 109
|
This family includes acyl- and aryl-CoA ligases, as well as the adenylation domain of nonribosomal peptide synthetases and firefly luciferases. The adenylate-forming enzymes catalyze an ATP-dependent two-step reaction to first activate a carboxylate substrate as an adenylate and then transfer the carboxylate to the pantetheine group of either coenzyme A or an acyl-carrier protein. The active site of the domain is located at the interface of a large N-terminal subdomain and a smaller C-terminal subdomain. Length = 338 |
| >gnl|CDD|213325 cd12117, A_NRPS_Srf_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Bacillus subtilis termination module Surfactin (SrfA-C) | Back alignment and domain information |
|---|
Score = 68.0 bits (167), Expect = 7e-13
Identities = 47/179 (26%), Positives = 71/179 (39%), Gaps = 29/179 (16%)
Query: 29 DRPSVVYGDVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAG 88
D ++VYGD T+ E ++R +LA L G+ PGDVVA L P + + AG
Sbjct: 2 DAIALVYGDRSLTYAELNERANRLARRLRARGVGPGDVVALLLERSPELVVAILAILKAG 61
Query: 89 AVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPEC 148
A L+ + + ++ +L S A+++ D ++ A L +P
Sbjct: 62 AAYVPLDPAYPAERLAFMLEDSGARVLLTD---------------ESLAPLARADQLPLV 106
Query: 149 GEPVSTVASSSGNLEYESLLAIGKLREVRRPKDECDPIALNYTSGTTSSPKGVICSHRG 207
A +G D D + YTSG+T PKGV HRG
Sbjct: 107 ILEEELDAEDAGP--------------PAPAVDADDLAYVMYTSGSTGRPKGVAVPHRG 151
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the adenylation domain of the Bacillus subtilis termination module (Surfactin domain, SrfA-C) which recognizes a specific amino acid building block, which is then activated and transferred to the terminal thiol of the 4'-phosphopantetheine (Ppan) arm of the downstream peptidyl carrier protein (PCP) domain. Length = 474 |
| >gnl|CDD|183506 PRK12406, PRK12406, long-chain-fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 68.2 bits (167), Expect = 8e-13
Identities = 75/269 (27%), Positives = 111/269 (41%), Gaps = 32/269 (11%)
Query: 44 ETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAGAVLCTLNTRHDSAMV 103
E QR + A GLA LG+ PGD VA L N A +E + GA +N +
Sbjct: 16 ELAQRAARAAGGLAALGVRPGDCVALLMRNDFAFFEAAYAAMRLGAYAVPVNWHFKPEEI 75
Query: 104 SVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGEPVST-------VA 156
+ +L S A+++ LL A A + +L VP E + +
Sbjct: 76 AYILEDSGARVLIAHADLLHGLASAL------PAGVTVLS-VPTPPEIAAAYRISPALLT 128
Query: 157 SSSGNLEYESLLAIGKLREVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAA 216
+G +++E LA + + P P ++ YTSGTT PKGV R A AAA
Sbjct: 129 PPAGAIDWEGWLAQQEPYD--GPPVP-QPQSMIYTSGTTGHPKGV---RRAAPTPEQAAA 182
Query: 217 LFNEM-----GLMPTY--LWCVPMFHC--NGWCLTWAVAAQGGTNVCQRTVNAKEIFDNI 267
+M GL P L P++H N + L GG V Q + +E+ I
Sbjct: 183 -AEQMRALIYGLKPGIRALLTGPLYHSAPNAYGL--RAGRLGGVLVLQPRFDPEELLQLI 239
Query: 268 TRHKVTHFGGAPTVLNMIANAPPVFENRF 296
RH++TH PT+ + P ++
Sbjct: 240 ERHRITHMHMVPTMFIRLLKLPEEVRAKY 268
|
Length = 509 |
| >gnl|CDD|213293 cd05927, LC-FACS_euk, Eukaryotic long-chain fatty acid CoA synthetase (LC-FACS) | Back alignment and domain information |
|---|
Score = 66.8 bits (164), Expect = 2e-12
Identities = 59/255 (23%), Positives = 97/255 (38%), Gaps = 52/255 (20%)
Query: 40 YTW---KETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAGAVLCTL-N 95
Y W KE +R + + SGL LG+ PGD + A N P V+ L +
Sbjct: 3 YEWISYKEVEERALNIGSGLRALGLKPGDKIGIFAENRPEWIITEQACFSQSLVIVPLYD 62
Query: 96 TRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGEPVSTV 155
T + A+ +L +E I+F D A ++ S
Sbjct: 63 TLGEEAIEYIL-NETEISIVFCD---------AVKVYS---------------------- 90
Query: 156 ASSSGNLEYESLLAIGKLREVRRPKDECDPIALN-YTSGTTSSPKGVICSHRGAYLNSLA 214
+E L +GK +V + + +A YTSGTT +PKGV+ +H + +
Sbjct: 91 --------FEELEELGKKNKVPPTPPKPEDLATIMYTSGTTGNPKGVMLTHGN--IVAGV 140
Query: 215 AALFNEMGLMP----TYLWCVPMFHCNGWCLTWAVAAQGGTNVCQRTVNAKEIFDNITRH 270
A + + Y+ +P+ H + GG + + + + + +I
Sbjct: 141 AGINKIVPEFIGPTDVYISYLPLAHIFERVVENVCLYIGGR-IGYYSGDTRGLKGDIKEL 199
Query: 271 KVTHFGGAPTVLNMI 285
K T F G P VL+ I
Sbjct: 200 KPTVFVGVPRVLDRI 214
|
The members of this family are eukaryotic fatty acid CoA synthetases that activate fatty acids with chain lengths of 12 to 20. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Organisms tend to have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Length = 539 |
| >gnl|CDD|235724 PRK06178, PRK06178, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 65.8 bits (161), Expect = 5e-12
Identities = 67/276 (24%), Positives = 111/276 (40%), Gaps = 13/276 (4%)
Query: 12 VPLTPISFLERSAVVYRDRPSVVYGDVQYTWKETHQRCVKLASGLAHLGISPGDVVAALA 71
PLT +L A RP++++ T+ E + + A+ L G+ GD VA
Sbjct: 33 RPLT--EYLRAWARERPQRPAIIFYGHVITYAELDELSDRFAALLRQRGVGAGDRVAVFL 90
Query: 72 PNVPAMYELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPI-----AQ 126
PN P + + FG+ GAV ++ +S L + A+++ QL P+ A+
Sbjct: 91 PNCPQFHIVFFGILKLGAVHVPVSPLFREHELSYELNDAGAEVLLALDQLAPVVEQVRAE 150
Query: 127 GAFEILSKTSAK--LPLLVLVPECGEPVSTVASSSGNLEYESLLAIGKLREVRRPKDECD 184
+ + TS LP +P + +++G ++ L P
Sbjct: 151 TSLRHVIVTSLADVLPAEPTLPLPDSLRAPRLAAAGAIDLLPALRACTAPVPLPPPALDA 210
Query: 185 PIALNYTSGTTSSPKGVICSHRG-AYLNSLAAALFNEMGLMPTYLWCVPMFHCNG--WCL 241
ALNYT GTT PKG + R Y + A A+ G +L +P F G + L
Sbjct: 211 LAALNYTGGTTGMPKGCEHTQRDMVYTAAAAYAVAVVGGEDSVFLSFLPEFWIAGENFGL 270
Query: 242 TWAVAAQGGTNVCQRTVNAKEIFDNITRHKVTHFGG 277
+ + + G T V +A + R++VT
Sbjct: 271 LFPLFS-GATLVLLARWDAVAFMAAVERYRVTRTVM 305
|
Length = 567 |
| >gnl|CDD|213315 cd05968, AACS_like, Uncharacterized acyl-CoA synthetase subfamily similar to Acetoacetyl-CoA synthetase | Back alignment and domain information |
|---|
Score = 65.0 bits (159), Expect = 7e-12
Identities = 35/117 (29%), Positives = 49/117 (41%), Gaps = 15/117 (12%)
Query: 184 DPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMP--TYLWCVPMFHCNGWCL 241
DP + YTSGTT PKG + +H G + + F L P LW M GW +
Sbjct: 101 DPAMIIYTSGTTGKPKGTVHTHAGFPVKAAKDIGFC-FDLKPGDRLLWITDM----GWMM 155
Query: 242 -TWAVA---AQGGTNVCQRTV----NAKEIFDNITRHKVTHFGGAPTVLNMIANAPP 290
W V G T V + ++ + RHKVTH G +PT++ +
Sbjct: 156 GPWLVLGGLLLGATIVLYEGAPDYPDPDRLWRIVERHKVTHLGLSPTLIRALRAHGD 212
|
This uncharacterized acyl-CoA synthetase family is highly homologous to acetoacetyl-CoA synthetase. However, the proteins in this family exist in only bacteria and archaea. AACS is a cytosolic ligase that specifically activates acetoacetate to its coenzyme A ester by a two-step reaction. Acetoacetate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is the first step of the mevalonate pathway of isoprenoid biosynthesis via isopentenyl diphosphate. Isoprenoids are a large class of compounds found in all living organisms. Length = 474 |
| >gnl|CDD|132252 TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate-CoA ligase | Back alignment and domain information |
|---|
Score = 65.3 bits (159), Expect = 8e-12
Identities = 57/211 (27%), Positives = 90/211 (42%), Gaps = 20/211 (9%)
Query: 38 VQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAGAVLCTLNTR 97
+++++E R ++A GLA LG+ GDVV+ PN L+ GAVL L
Sbjct: 52 RRFSYRELDCRVDRIAVGLARLGVGRGDVVSFQLPNRWEFTALYLACARIGAVLNPLMPI 111
Query: 98 HDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVAS 157
+S +L H+++K+ V A + + +KLP L V V
Sbjct: 112 FRERELSFMLNHADSKVFVVPSVFRGFDHAA--MARELQSKLPALRQV--------VVID 161
Query: 158 SSGNLEYESLLAIGKLRE--------VRRPKDECDPIA-LNYTSGTTSSPKGVICSHRGA 208
G+ ++ +L + R+ + P+ D + L YTSGTT PKGV+ +
Sbjct: 162 GDGDDSFDRVL-MTPERDDTPDAAAILAGPRPSPDDVTQLIYTSGTTGEPKGVMHTANTL 220
Query: 209 YLNSLAAALFNEMGLMPTYLWCVPMFHCNGW 239
+ N A E+G L PM H G+
Sbjct: 221 FSNIHPYAERLELGGGDVILMASPMAHQTGF 251
|
Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris. Length = 538 |
| >gnl|CDD|184022 PRK13391, PRK13391, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 64.7 bits (158), Expect = 1e-11
Identities = 58/264 (21%), Positives = 95/264 (35%), Gaps = 31/264 (11%)
Query: 29 DRPSVVYG--DVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPM 86
D+P+V+ T++E +R +LA LG+ GD VA N E+ +
Sbjct: 12 DKPAVIMASTGEVVTYRELDERSNRLAHLFRSLGLKRGDHVAIFMENNLRYLEVCWAAER 71
Query: 87 AGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVP 146
+G +N+ A + ++ S A+ + L +A+ K + +++
Sbjct: 72 SGLYYTCVNSHLTPAEAAYIVDDSGARALITSAAKLDVARAL----LKQCPGVRHRLVLD 127
Query: 147 ECGEPVSTVASSSGNLEYESLLAIGKLREVRRPKDECDPIALNYTSGTTSSPKGVICSHR 206
GE G + Y A+ L DE + Y+SGTT PKG+ R
Sbjct: 128 GDGE-------LEGFVGYAE--AVAGLPATPIA-DESLGTDMLYSSGTTGRPKGIK---R 174
Query: 207 GAYLNSLAAALFNEMGLMP--------TYLWCVPMFHC--NGWCLTWAVAAQGGTNVCQR 256
L L YL P++H + V GGT +
Sbjct: 175 PLPEQPPDTPLPLTAFLQRLWGFRSDMVYLSPAPLYHSAPQRAVML--VIRLGGTVIVME 232
Query: 257 TVNAKEIFDNITRHKVTHFGGAPT 280
+A++ I + VTH PT
Sbjct: 233 HFDAEQYLALIEEYGVTHTQLVPT 256
|
Length = 511 |
| >gnl|CDD|213308 cd05943, AACS, Acetoacetyl-CoA synthetase (acetoacetate-CoA ligase, AACS) | Back alignment and domain information |
|---|
Score = 64.2 bits (157), Expect = 2e-11
Identities = 66/278 (23%), Positives = 98/278 (35%), Gaps = 54/278 (19%)
Query: 39 QYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAGAVLCTLNTRH 98
+ +W E + +LA+ L LG+ PGD VA PNVP GA+ +
Sbjct: 86 EISWAELRSQVARLAAALRDLGVKPGDRVAGYLPNVPEAVIAMLATASIGAIWSS--CSP 143
Query: 99 DSAMVSVL--LRHSEAKIIFVD--YQLLPIAQGAFEILSKTSAKLP---LLVLVPECGEP 151
D + +VL E K++F Y E +++ LP +V+VP
Sbjct: 144 DFGVEAVLDRFGQIEPKVLFAVDGYVYNGKEHDRREKIAEIVKGLPSLEAVVVVPYLSSD 203
Query: 152 VSTVASSSGNLEYESLLAIG---KLREVRRPKDECDPIALNYTSGTTSSPKGVICSHRGA 208
A L LA L R P D P+ + Y+SGTT PK ++ G
Sbjct: 204 AQPAALKFSALTLLWSLAGDRAAPLEFERLPFD--HPLWILYSSGTTGLPKCIVHGAGGT 261
Query: 209 YLNSLAAALFNEMGLMPTYLWCVPMFHCN-------------GWCL-TWAVA--AQGGTN 252
L L E GL HC+ GW + W V+ G T
Sbjct: 262 LLQHLK-----EHGL-----------HCDLRPGDRLFYYTTTGWMMWNWLVSGLLSGATL 305
Query: 253 VC------QRTVNAKEIFDNITRHKVTHFGGAPTVLNM 284
V + ++ + +T FG + L+
Sbjct: 306 VLYDGSPLYPDPDV--LWRLAAKLGITIFGTSAKYLDA 341
|
AACS is a cytosolic ligase that specifically activates acetoacetate to its coenzyme A ester by a two-step reaction. Acetoacetate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is the first step of the mevalonate pathway of isoprenoid biosynthesis via isopentenyl diphosphate. Isoprenoids are a large class of compounds found in all living organisms. AACS is widely distributed in bacteria, archaea and eukaryotes. In bacteria, AACS is known to exhibit an important role in the metabolism of poly-b-hydroxybutyrate, an intracellular reserve of organic carbon and chemical energy by some microorganisms. In mammals, AACS influences the rate of ketone body utilization for the formation of physiologically important fatty acids and cholesterol. Length = 616 |
| >gnl|CDD|181011 PRK07514, PRK07514, malonyl-CoA synthase; Validated | Back alignment and domain information |
|---|
Score = 63.7 bits (156), Expect = 2e-11
Identities = 67/222 (30%), Positives = 93/222 (41%), Gaps = 25/222 (11%)
Query: 22 RSAVVYRDRPSVVYGDVQ-YTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYEL 80
R+A RD P + D YT+ + +LA+ L LG+ PGD VA P L
Sbjct: 10 RAAFADRDAPFIETPDGLRYTYGDLDAASARLANLLVALGVKPGDRVAVQVEKSPEALAL 69
Query: 81 HFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLP 140
+ AGAV LNT + A + + +E ++ D F LSK +A
Sbjct: 70 YLATLRAGAVFLPLNTAYTLAELDYFIGDAEPALVVCD-------PANFAWLSKIAAA-- 120
Query: 141 LLVLVPECGEP-VSTV-ASSSGNLEYESLLAIGKLREVRRPKDECDPIALNYTSGTTSSP 198
G P V T+ A +G+L + A V R D D A+ YTSGTT
Sbjct: 121 -------AGAPHVETLDADGTGSLLEAAAAAPDDFETVPRGAD--DLAAILYTSGTTGRS 171
Query: 199 KGVICSHRGAYLNSLAAALFNEMGLMPT--YLWCVPMFHCNG 238
KG + SH L S A L + P + +P+FH +G
Sbjct: 172 KGAMLSHGN--LLSNALTLVDYWRFTPDDVLIHALPIFHTHG 211
|
Length = 504 |
| >gnl|CDD|233316 TIGR01217, ac_ac_CoA_syn, acetoacetyl-CoA synthase | Back alignment and domain information |
|---|
Score = 63.7 bits (155), Expect = 2e-11
Identities = 57/244 (23%), Positives = 95/244 (38%), Gaps = 24/244 (9%)
Query: 24 AVVYRDRPSVVYGDVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFG 83
A++Y D TW E ++ LA+ L LG+ PGD V+ PN+P
Sbjct: 102 ALLYVDETHEPA---PVTWAELRRQVASLAAALRALGVRPGDRVSGYLPNIPQAVVAMLA 158
Query: 84 VPMAGAVLCTLNTRHDSAMVSVLLRHS--EAKIIFV--DYQLLPIAQGAFEILSKTSAKL 139
GA+ + D VL R E K++F Y+ + +++ +L
Sbjct: 159 TASVGAIWSS--CSPDFGARGVLDRFQQIEPKLLFTVDGYRYNGKEHDRRDKVAEVRKEL 216
Query: 140 PLL---VLVPECGEPVSTVASSSGNLEYESLLA---IGKLREVRRPKDECDPIALNYTSG 193
P L V +P G + G L+ E A +L + P D P+ + ++SG
Sbjct: 217 PTLRAVVHIPYLGPRETEAPKIDGALDLEDFTAAAQAAELVFEQLPFDH--PLWILFSSG 274
Query: 194 TTSSPKGVICSHRGAYLNSLAAALFN-EMGLMPTYLWCVPMFHCNGWCL-TWAVAAQG-G 250
TT PK ++ S G + L + ++G + + GW + W V+ G
Sbjct: 275 TTGLPKCIVHSAGGTLVQHLKEHGLHCDLGPGDRLFY----YTTTGWMMWNWLVSGLATG 330
Query: 251 TNVC 254
+
Sbjct: 331 ATLV 334
|
This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway [Central intermediary metabolism, Other]. Length = 652 |
| >gnl|CDD|213300 cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 63.4 bits (155), Expect = 3e-11
Identities = 30/82 (36%), Positives = 44/82 (53%)
Query: 37 DVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAGAVLCTLNT 96
+YT+ E +R +LA+GL LG+ PGD VA + N P F + GAV +NT
Sbjct: 1 GRRYTYAELAERVNRLAAGLLALGVRPGDRVALMLDNCPEFLRAWFALNKLGAVAVPINT 60
Query: 97 RHDSAMVSVLLRHSEAKIIFVD 118
++ +L HS A++I VD
Sbjct: 61 ALRGEELAHILDHSGARLIVVD 82
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Members of this family include DitJ from Pseudomonas and similar proteins. Length = 421 |
| >gnl|CDD|213301 cd05935, LC_FACS_like, Putative long-chain fatty acid CoA ligase | Back alignment and domain information |
|---|
Score = 63.1 bits (154), Expect = 3e-11
Identities = 29/108 (26%), Positives = 49/108 (45%), Gaps = 3/108 (2%)
Query: 184 DPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPTYLWCVPMFHCNGW--CL 241
D + YTSGTT PKG + +HR + A+A ++ + L +P+FH G +
Sbjct: 85 DVAVIPYTSGTTGLPKGCMHTHRTVLATAAASAAWSGLTPDSVLLAFLPLFHVAGMQGSM 144
Query: 242 TWAVAAQGGTNVCQRTVNAKEIFDNITRHKVTHFGGAPTVLNMIANAP 289
+ G T V + + I R++VTH+ T++ + P
Sbjct: 145 NAPIYT-GATLVLLTRWDREAAARAIERYRVTHWTNIVTMVVDLLAHP 191
|
The members of this family are putative long-chain fatty acyl-CoA synthetases, which catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. Length = 430 |
| >gnl|CDD|233803 TIGR02262, benz_CoA_lig, benzoate-CoA ligase family | Back alignment and domain information |
|---|
Score = 62.9 bits (153), Expect = 4e-11
Identities = 64/267 (23%), Positives = 99/267 (37%), Gaps = 44/267 (16%)
Query: 40 YTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAGAVLCTLNTRHD 99
++ E + +L + L LG+ + V L + G AG V LNT
Sbjct: 31 LSYGELEAQVRRLGAALRRLGVKREERVLLLMLDGVDFPIAFLGAIRAGIVPVALNTLLT 90
Query: 100 SAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVASSS 159
+ + +L S A+++FV +LLP+ + A K P L G P +
Sbjct: 91 ADDYAYMLEDSRARVVFVSGELLPVIKAAL-------GKSPHLEHRVVVGRP------EA 137
Query: 160 GNLEYESLLAIGKLREVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNS------- 212
G ++ LLA + DP Y+SG+T PKGV+ +H Y +
Sbjct: 138 GEVQLAELLATESEQFKPAATQADDPAFWLYSSGSTGMPKGVVHTHSNPYWTAELYARNT 197
Query: 213 ----------LAAALFNEMGLMPTYLWCVPMFHCNGWCLTWAVAAQGGTNVCQRTVNAKE 262
AA LF GL G LT+ ++ T +
Sbjct: 198 LGIREDDVVFSAAKLFFAYGL--------------GNALTFPMSVGATTVLMGERPTPDA 243
Query: 263 IFDNITRHKVTHFGGAPTVLNMIANAP 289
+FD + RH+ T F G PT+ + P
Sbjct: 244 VFDRLRRHQPTIFYGVPTLYAAMLADP 270
|
Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases. Length = 508 |
| >gnl|CDD|213307 cd05941, MCS, Malonyl-CoA synthetase (MCS) | Back alignment and domain information |
|---|
Score = 62.6 bits (153), Expect = 5e-11
Identities = 29/88 (32%), Positives = 44/88 (50%)
Query: 29 DRPSVVYGDVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAG 88
DR ++V G T+ E R +LA L LG+ PGD VA LAP L+ + AG
Sbjct: 1 DRIALVDGGRSLTYGELDARSGRLAKALLALGLLPGDRVAVLAPKSAEYVVLYLAIWRAG 60
Query: 89 AVLCTLNTRHDSAMVSVLLRHSEAKIIF 116
V LN + +A ++ +L S+ ++
Sbjct: 61 GVAVPLNPSYPAAELAYILSDSQPSLLV 88
|
MCS catalyzes the formation of malonyl-CoA in a two-step reaction consisting of the adenylation of malonate with ATP, followed by malonyl transfer from malonyl-AMP to CoA. Malonic acid and its derivatives are the building blocks of polyketides and malonyl-CoA serves as the substrate of polyketide synthases. Malonyl-CoA synthetase has broad substrate tolerance and can activate a variety of malonyl acid derivatives. MCS may play an important role in biosynthesis of polyketides, the important secondary metabolites with therapeutic and agrochemical utility. Length = 430 |
| >gnl|CDD|236091 PRK07768, PRK07768, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 61.9 bits (151), Expect = 8e-11
Identities = 63/222 (28%), Positives = 86/222 (38%), Gaps = 56/222 (25%)
Query: 38 VQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAGAVLCTLNT- 96
V++TW E H+R ++A GLA G+ PGD VA LA + G+ M GA L L+
Sbjct: 28 VRHTWGEVHERARRIAGGLAAAGVGPGDAVAVLAGAPVEIAPTAQGLWMRGASLTMLHQP 87
Query: 97 --RHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKL-----PLLVLVPECG 149
R D A+ A+ ++ AK P L P
Sbjct: 88 TPRTDLAV---------------------WAEDTLRVIGMIGAKAVVVGEPFLAAAPVLE 126
Query: 150 EPVSTVASSSGNLEYESLLAIGKLREVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAY 209
E V L LLA + V E D + TSG+T SPK V +H Y
Sbjct: 127 EKGIRV------LTVADLLAADPIDPV--ETGEDDLALMQLTSGSTGSPKAVQITHGNLY 178
Query: 210 LN---SLAAA--------------LFNEMGLMPTYLWCVPMF 234
N AA LF++MG++ +L VPM+
Sbjct: 179 ANAEAMFVAAEFDVETDVMVSWLPLFHDMGMV-GFL-TVPMY 218
|
Length = 545 |
| >gnl|CDD|213320 cd05973, MACS_like_2, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS) | Back alignment and domain information |
|---|
Score = 60.9 bits (148), Expect = 2e-10
Identities = 58/260 (22%), Positives = 86/260 (33%), Gaps = 72/260 (27%)
Query: 40 YTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAGAVLCTLNTRHD 99
++ E ++ ++A+ LA LG+ PGD VA L P P + GA+ L T
Sbjct: 1 LSYAELREQSARVANLLADLGVKPGDRVAGLLPRTPELVVAILATWRVGAIYVPLFTAFG 60
Query: 100 SAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVASSS 159
+ L HS AK++ + KL
Sbjct: 61 PKAIEYRLGHSGAKVVVTNAANR--------------GKLD------------------- 87
Query: 160 GNLEYESLLAIGKLREVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFN 219
+ L A YTSGTT PKGV L + A +
Sbjct: 88 -----DDLFAQ------------------MYTSGTTGLPKGVPVPLN--ALAAFYAYMRY 122
Query: 220 EMGLMPT-YLWCV--PMFHCNGW------CLTWAVAAQGGTNVCQRTVNAKEIFDNITRH 270
+ L W + P GW +T +A T + A+ +D + R
Sbjct: 123 AIDLRDDDVFWNIADP-----GWAYGLYYAITGPLAMGITTVFLEGGFTAENTYDVLERL 177
Query: 271 KVTHFGGAPTVLNMIANAPP 290
VT+F G+PT M+ A
Sbjct: 178 GVTNFAGSPTAYRMLMAAGA 197
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 440 |
| >gnl|CDD|213299 cd05933, ACSBG_like, Bubblegum-like very long-chain fatty acid CoA synthetase (VL-FACS) | Back alignment and domain information |
|---|
Score = 61.2 bits (149), Expect = 2e-10
Identities = 45/176 (25%), Positives = 69/176 (39%), Gaps = 24/176 (13%)
Query: 41 TWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAGAVLCTLNTRHDS 100
T+K+ ++ C + A LG+ V L N P + G AG + + T +
Sbjct: 10 TYKQYYEACRQAAKAFLKLGLERFHSVGILGFNSPEWFIAAVGAIFAGGIAVGIYTTNSP 69
Query: 101 AMVSVLLRHSEAKIIFVD--YQLLPIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVASS 158
+ SEA I+ VD QL I +LP L + + EP+
Sbjct: 70 EACQYVAETSEANILVVDNAKQLQKI--------LAIQDQLPHLKAIIQYREPLK--EKE 119
Query: 159 SGNLEYESLLAIG---------KLREVRRPKDECDPIALNYTSGTTSSPKGVICSH 205
++ + +G + E ++P C L YTSGTT PKGV+ SH
Sbjct: 120 PNLYSWKEFMELGRSIPDEQLDAIIESQKPNQCC---TLIYTSGTTGMPKGVMLSH 172
|
This family of very long-chain fatty acid CoA synthetase is named bubblegum because Drosophila melanogaster mutant bubblegum (BGM) has elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene of this family. The human homolog (hsBG) has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. VL-FACS is involved in the first reaction step of very long chain fatty acid degradation. It catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 594 |
| >gnl|CDD|213297 cd05931, FAAL, Fatty acyl-AMP ligase (FAAL) | Back alignment and domain information |
|---|
Score = 61.1 bits (149), Expect = 2e-10
Identities = 49/203 (24%), Positives = 81/203 (39%), Gaps = 35/203 (17%)
Query: 41 TWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAGAVLCTL-----N 95
T+ E +R +A+ L LG +PGD V LAP FG AGA+
Sbjct: 25 TYAELDRRARAIAARLQALG-APGDRVLLLAPPGLDFVAAFFGCLYAGAIAVPAPPPRRL 83
Query: 96 TRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGEPVSTV 155
RH + + ++L + A+ + + A + + P +L+
Sbjct: 84 GRHLARLAAIL-ADAGARAV--------LTTSAVLAALRAALAAPAALLLLLIAADDLAA 134
Query: 156 ASSSGNLEYESLLAIGKLREVRRPKDECDPIA-LNYTSGTTSSPKGVICSHRGAYLNSLA 214
+++ + R P + D IA L YTSG+T +PKGV+ +H N
Sbjct: 135 LAAA---------------DWRPPPPDPDDIAFLQYTSGSTGAPKGVMVTHGNLLANL-- 177
Query: 215 AALFNEMGLMPTYLWC--VPMFH 235
A+ GL P + +P++H
Sbjct: 178 RAIARAFGLDPDDVGVSWLPLYH 200
|
FAAL belongs to the class I adenylate forming enzyme family and is homologous to fatty acyl-coenzyme A (CoA) ligases (FACLs). However, FAALs produce only the acyl adenylate and are unable to perform the thioester-forming reaction, while FACLs perform a two-step catalytic reaction; AMP ligation followed by CoA ligation using ATP and CoA as cofactors. FAALs have insertion motifs between the N-terminal and C-terminal subdomains that distinguish them from the FACLs. This insertion motif precludes the binding of CoA, thus preventing CoA ligation. It has been suggested that the acyl adenylates serve as substrates for multifunctional polyketide synthases to permit synthesis of complex lipids such as phthiocerol dimycocerosate, sulfolipids, mycolic acids, and mycobactin. Length = 547 |
| >gnl|CDD|213316 cd05969, MACS_like_4, Uncharacterized subfamily of Acetyl-CoA synthetase like family (ACS) | Back alignment and domain information |
|---|
Score = 60.9 bits (148), Expect = 2e-10
Identities = 62/266 (23%), Positives = 91/266 (34%), Gaps = 71/266 (26%)
Query: 40 YTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAGAVLCTLNTRHD 99
Y+++E + + A+ LA LG+ G+ V L P P +Y G GAV L +
Sbjct: 1 YSYQELKELSARFANVLASLGVGKGERVFTLLPRSPELYVAALGTLKLGAVYGPLFSAFG 60
Query: 100 SAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVASSS 159
+ L EAK++ +L +T + P L
Sbjct: 61 PEPIRDRLELGEAKVLITTPEL----------YERTDPEDPAL----------------- 93
Query: 160 GNLEYESLLAIGKLREVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFN 219
L++TSGTT PKGV+ HR + A
Sbjct: 94 ----------------------------LHFTSGTTGKPKGVLHVHRAVVAHYATARYV- 124
Query: 220 EMGLMP-TYLWCV--PMFHCNGWCL-----TWAVAAQGGTNVC-QRTVNAKEIFDNITRH 270
+ L P WC P GW A G T V + +A+ + +
Sbjct: 125 -LDLRPDDVYWCTADP-----GWVTGTSYGIIAPLLNGVTLVVDEGEFDAERWYGILEEE 178
Query: 271 KVTHFGGAPTVLNMIANAPPVFENRF 296
KVT + APT L M+ A P R+
Sbjct: 179 KVTVWYTAPTALRMLMRAGPELAARY 204
|
This family is most similar to acetyl-CoA synthetase. Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is only present in bacteria. Length = 443 |
| >gnl|CDD|235279 PRK04319, PRK04319, acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 60.3 bits (147), Expect = 3e-10
Identities = 54/185 (29%), Positives = 76/185 (41%), Gaps = 16/185 (8%)
Query: 21 ERSAVVYRDRPSVVYGDVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYEL 80
++ A+ Y D +YT+KE + K A+ L LG+ GD V P +P +Y
Sbjct: 59 DKVALRYLDASR----KEKYTYKELKELSNKFANVLKELGVEKGDRVFIFMPRIPELYFA 114
Query: 81 HFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLP 140
G GA++ L V L SEAK++ LL K + LP
Sbjct: 115 LLGALKNGAIVGPLFEAFMEEAVRDRLEDSEAKVLITTPALLE---------RKPADDLP 165
Query: 141 LLVLVPECGEPVSTVASSSGNLEYESLLAIGKLREVRRPKDECDPIALNYTSGTTSSPKG 200
L V GE V G L++ +L+ D D L+YTSG+T PKG
Sbjct: 166 SLKHVLLVGEDVE---EGPGTLDFNALMEQASDEFDIEWTDREDGAILHYTSGSTGKPKG 222
Query: 201 VICSH 205
V+ H
Sbjct: 223 VLHVH 227
|
Length = 570 |
| >gnl|CDD|213322 cd12114, A_NRPS_TlmIV_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Streptoalloteichus tallysomycin biosynthesis genes | Back alignment and domain information |
|---|
Score = 59.5 bits (145), Expect = 5e-10
Identities = 39/180 (21%), Positives = 68/180 (37%), Gaps = 30/180 (16%)
Query: 29 DRPSVVYGDVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAG 88
D +V+ G T+ E +R +A+ L G++PGD+VA + P G+ +AG
Sbjct: 2 DATAVIDGAGTLTYGELARRANAIAAALRAAGVAPGDLVAVVMPKGWEQIVAVLGILLAG 61
Query: 89 AVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPEC 148
A ++ + + +L + A+ + D L
Sbjct: 62 AAYVPIDPDQPAERRAAILARAGARAVLTD-----------------------PGLAQPE 98
Query: 149 GEPVSTVASSSGNLEYESLLAIGKLREVRRPKDECDPIALNYTSGTTSSPKGVICSHRGA 208
P V + ++ A R + D + +TSG+T PKGV+ +HR A
Sbjct: 99 EAPDLLVVAD------DAAAAESPAPPPPRVDPD-DLAYVIFTSGSTGEPKGVMITHRAA 151
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the TLM biosynthetic gene cluster from Streptoalloteichus that consists of nine NRPS genes; the N-terminal module of TlmVI (NRPS-5) and the starter module of BlmVI (NRPS-5) are comprised of the acyl CoA ligase (AL) and acyl carrier protein (ACP)-like domains, which are thought to be involved in the biosynthesis of the beta-aminoalaninamide moiety. Length = 476 |
| >gnl|CDD|236668 PRK10252, entF, enterobactin synthase subunit F; Provisional | Back alignment and domain information |
|---|
Score = 59.3 bits (144), Expect = 8e-10
Identities = 48/204 (23%), Positives = 83/204 (40%), Gaps = 33/204 (16%)
Query: 12 VPLTPIS-FLERSAVVYRDRPSVVYGDVQYTWKETHQRCVKLASGLAHLGISPGDVVA-A 69
+P T +S + + A D P++ Q++++E ++ V LA+ L G+ PGD VA A
Sbjct: 455 IPETTLSALVAQQAAKTPDAPALADARYQFSYREMREQVVALANLLRERGVKPGDSVAVA 514
Query: 70 LAPNVPAMYELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAF 129
L +V LH + AGA L+T + + ++L + ++
Sbjct: 515 LPRSVFLTLALH-AIVEAGAAWLPLDTGYPDDRLKMMLEDARPSLLIT------------ 561
Query: 130 EILSKTSAKLPLLVLVPECGEPVSTVASSSGNLEYESLLAIGKLREVRRPKDECDPIALN 189
T+ +LP P T Y + LA ++ + +
Sbjct: 562 -----TADQLPRFA-----DVPDLTSLC------YNAPLAPQGAAPLQLSQPH-HTAYII 604
Query: 190 YTSGTTSSPKGVICSHRGAYLNSL 213
+TSG+T PKGV+ A +N L
Sbjct: 605 FTSGSTGRPKGVMVGQT-AIVNRL 627
|
Length = 1296 |
| >gnl|CDD|235134 PRK03584, PRK03584, acetoacetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 59.0 bits (144), Expect = 9e-10
Identities = 84/299 (28%), Positives = 124/299 (41%), Gaps = 64/299 (21%)
Query: 29 DRPSVVY-----GDVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVP----AMYE 79
DRP++++ + +W E ++ LA+ L LG+ PGD VAA PN+P AM
Sbjct: 99 DRPAIIFRGEDGPRRELSWAELRRQVAALAAALRALGVGPGDRVAAYLPNIPETVVAM-- 156
Query: 80 LHFGVPMA----GAV--LCTLNTRHDSAMVSVL--LRHSEAKIIF-VD-YQLLPIAQG-A 128
+A GA+ C+ D + VL E K++ VD Y+ G A
Sbjct: 157 ------LATASLGAIWSSCS----PDFGVQGVLDRFGQIEPKVLIAVDGYRY----GGKA 202
Query: 129 FEILSKT---SAKLPLL---VLVPECGEPVSTVASSSGNLEYESLLAI---GKLREVRRP 179
F+ +K A LP L V+VP G + A+ G L +E LA +L P
Sbjct: 203 FDRRAKVAELRAALPSLEHVVVVPYLGPAAAA-AALPGALLWEDFLAPAEAAELEFEPVP 261
Query: 180 KDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAA-ALFNEMGLMPTYLWCVPMFHCNG 238
D P+ + Y+SGTT PK ++ H G L L L ++G + W + G
Sbjct: 262 FD--HPLWILYSSGTTGLPKCIVHGHGGILLEHLKELGLHCDLGPGDRFFW----YTTCG 315
Query: 239 WCL-TWAVA--AQGGTNVC------QRTVNAKEIFDNITRHKVTHFGGAPTVLNMIANA 288
W + W V+ G T V N ++D VT FG + L+ A
Sbjct: 316 WMMWNWLVSGLLVGATLVLYDGSPFYPDPNV--LWDLAAEEGVTVFGTSAKYLDACEKA 372
|
Length = 655 |
| >gnl|CDD|213304 cd05938, hsFATP2a_ACSVL_like, Fatty acid transport proteins (FATP) including hsFATP2, hsFATP5, and hsFATP6, and similar proteins | Back alignment and domain information |
|---|
Score = 58.9 bits (143), Expect = 9e-10
Identities = 67/268 (25%), Positives = 106/268 (39%), Gaps = 39/268 (14%)
Query: 40 YTWKETHQRCVKLASGL-AHLGISPGDVVAALAPNVPAMYELHFGVPMAGAVLCTLNTRH 98
T+ E +R ++A L AH G+ PGD VA L N PA + G+ G LNT
Sbjct: 4 VTYAEVDKRSNQVARALLAHAGLKPGDTVALLLGNEPAFLWIWLGLAKLGCPTAFLNTNI 63
Query: 99 DSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAK-LPLLVLVPECGEP-VST-- 154
S + R A+++ D +LL + EIL A + + L V +
Sbjct: 64 RSGSLLHCFRCCGARVLVADPELLEAVE---EILPALRAMGVRVFYLSHTSPPEGVISLL 120
Query: 155 --VASSSGNLEYESLLAIGKLREVRRPKDECDPIALNYTSGTTSSPKGVICSH----RGA 208
V ++S S LR + I YTSGTT PK SH + +
Sbjct: 121 AKVDAASDEPVPAS------LRSGVSIRSTALYI---YTSGTTGLPKAARISHLRVLQCS 171
Query: 209 YLNSLAAALFNEMGLMPTYLWCVPMFHCNGW------CLTWAVAAQGGTNVCQRTVNAKE 262
+ SL +++ +P++H +G C+ G T V + +A +
Sbjct: 172 GMLSLCGVTADDVVYTT-----LPLYHSSGALLGIVGCI-----GLGATLVLKPKFSASQ 221
Query: 263 IFDNITRHKVTHFGGAPTVLNMIANAPP 290
+D+ ++ VT F +L + N P
Sbjct: 222 FWDDCRKYNVTVFQYIGELLRYLCNQPQ 249
|
Fatty acid transport proteins (FATP) of this family transport long-chain or very-long-chain fatty acids across the plasma membrane. At least five copies of FATPs are identified in mammalian cells. This family includes hsFATP2, hsFATP5, and hsFATP6, and similar proteins. Each FATP has unique patterns of tissue distribution. These FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. The hsFATP proteins exist in two splice variants; the b variant, lacking exon 3, has no acyl-CoA synthetase activity. FATPs are key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 535 |
| >gnl|CDD|233550 TIGR01733, AA-adenyl-dom, amino acid adenylation domain | Back alignment and domain information |
|---|
Score = 58.4 bits (142), Expect = 9e-10
Identities = 58/258 (22%), Positives = 89/258 (34%), Gaps = 43/258 (16%)
Query: 41 TWKETHQRCVKLASGL-AHLGISPGDVVAALAPNVPAMYELHFGVPMAGAVLCTLNTRHD 99
T++E +R +LA L A G+ PGD VA L + V AGA L+ +
Sbjct: 1 TYRELDERANRLARHLRAAGGVGPGDRVAVLLERSAELVVAILAVLKAGAAYVPLDPAYP 60
Query: 100 SAMVSVLLRHSEAKIIFVDYQLLPIAQG-AFEILSKTSAKLPLLVLVPECGEPVSTVASS 158
+ ++ +L + A+++ D L G ++ L L L P S
Sbjct: 61 AERLAFILEDAGARLLLTDSALASRLAGLVLPVI--LLDPLELAALDDAPAPPPPDAPSG 118
Query: 159 SGNLEYESLLAIGKLREVRRPKDECDPIALNYTSGTTSSPKGVICSHRGA--YLNSLAAA 216
+L Y I YTSG+T PKGV+ +HR L LA
Sbjct: 119 PDDLAY----VI-------------------YTSGSTGRPKGVVVTHRSLVNLLAWLARR 155
Query: 217 LFNEMGLMPTYLWCVPMFHCNG----WCLTWAVAAQGGTNVC----QRTVNAKEIFDNIT 268
+ L + G T V + +A + I
Sbjct: 156 YGLDPD--DRVL-QFASLSFDASVEEIFGALLA---GATLVVPPEDEERDDAALLAALIA 209
Query: 269 RHKVTHFGGAPTVLNMIA 286
H VT P++L ++A
Sbjct: 210 EHPVTVLNLTPSLLALLA 227
|
This model represents a domain responsible for the specific recognition of amino acids and activation as adenylyl amino acids. The reaction catalyzed is aa + ATP -> aa-AMP + PPi. These domains are usually found as components of multi-domain non-ribosomal peptide synthetases and are usually called "A-domains" in that context (for a review, see ). A-domains are almost invariably followed by "T-domains" (thiolation domains, pfam00550) to which the amino acid adenylate is transferred as a thiol-ester to a bound pantetheine cofactor with the release of AMP (these are also called peptide carrier proteins, or PCPs. When the A-domain does not represent the first module (corresponding to the first amino acid in the product molecule) it is usually preceded by a "C-domain" (condensation domain, pfam00668) which catalyzes the ligation of two amino acid thiol-esters from neighboring modules. This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group. Length = 409 |
| >gnl|CDD|178337 PLN02736, PLN02736, long-chain acyl-CoA synthetase | Back alignment and domain information |
|---|
Score = 59.0 bits (143), Expect = 1e-09
Identities = 64/226 (28%), Positives = 95/226 (42%), Gaps = 36/226 (15%)
Query: 28 RDRPSVVYGDVQYTWK---ETHQRCVKLASGLAHLGISPGDVVAALAPNVP-------AM 77
R R G+ Y W E + SGL GI G V N P A
Sbjct: 66 RIRVDGTVGE--YKWMTYGEAGTARTAIGSGLVQHGIPKGACVGLYFINRPEWLIVDHAC 123
Query: 78 YELHF-GVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTS 136
+ VP+ TL D+ V ++ H+E IF Q L +LS S
Sbjct: 124 SAYSYVSVPLYD----TLGP--DA--VKFIVNHAEVAAIFCVPQTLNT------LLSCLS 169
Query: 137 AKLP---LLVLVPECGEPVSTVASSSGN--LEYESLLAIGK--LREVRRPKDECDPIALN 189
++P L+V+V EP+ ++ S +G + Y LLA G+ + R PK E D +
Sbjct: 170 -EIPSVRLIVVVGGADEPLPSLPSGTGVEIVTYSKLLAQGRSSPQPFRPPKPE-DVATIC 227
Query: 190 YTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPTYLWCVPMFH 235
YTSGTT +PKGV+ +H N ++L + ++ +P+ H
Sbjct: 228 YTSGTTGTPKGVVLTHGNLIANVAGSSLSTKFYPSDVHISYLPLAH 273
|
Length = 651 |
| >gnl|CDD|213319 cd05972, MACS_like, Medium-chain acyl-CoA synthetase (MACS or ACSM) | Back alignment and domain information |
|---|
Score = 57.7 bits (140), Expect = 2e-09
Identities = 29/111 (26%), Positives = 45/111 (40%), Gaps = 7/111 (6%)
Query: 181 DECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPTYL-WCV--PMFHCN 237
DP L +TSGTT PK V+ +H + + A + + L P L W + P +
Sbjct: 79 SADDPALLYFTSGTTGLPKMVLHTHSYPLGHLVTGAYW--LDLRPDDLHWTIADPGWAKG 136
Query: 238 GWCLTWAVAAQGGTNVCQRTV--NAKEIFDNITRHKVTHFGGAPTVLNMIA 286
W +A G +A+ + + R+ VT F PT M+
Sbjct: 137 AWSSLFAPWLLGAAVFVYHGRRFDAERTLELLERYGVTTFCAPPTAYRMLL 187
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. Length = 430 |
| >gnl|CDD|213314 cd05967, PrpE, Propionyl-CoA synthetase (PrpE) | Back alignment and domain information |
|---|
Score = 57.7 bits (140), Expect = 2e-09
Identities = 75/305 (24%), Positives = 118/305 (38%), Gaps = 66/305 (21%)
Query: 27 YRDRPSVVY-----GDVQ-YTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVP----- 75
D+ +++Y G + YT+ E + +LA L LG+ GD V P +P
Sbjct: 55 RGDQIALIYDSPVTGTKRTYTYAELYDEVSRLAGVLRKLGVVKGDRVIIYMPMIPEAVIA 114
Query: 76 --------AMYELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHS---EAKIIFVDYQLLPI 124
A++ + FG G L +R D A +++ S E + V Y P+
Sbjct: 115 MLACARIGAIHSVVFG----GFASKELASRIDDAKPKLIVTASFGIEPGRV-VPY--KPL 167
Query: 125 AQGAFEILSKTSAKLPLLVLVPECGEPVSTVASSSGNLEYESLLAIGKLREVRRPKDECD 184
A E+ S P VL+ G+ V +L++ L+A + + P + D
Sbjct: 168 LDKALEL----SQHKPHKVLILNRGQ-VPAPLKPGRDLDWAELMAKARPVDCV-PVESTD 221
Query: 185 PIALNYTSGTTSSPKGVICSHR--GAYLNSLAAALFNEMGLMPTYLWCVPMFHCNGWC-- 240
P+ + YTSGTT PKGV+ R G Y +L ++ N G+ P ++ W
Sbjct: 222 PLYILYTSGTTGKPKGVV---RDTGGYAVALKWSMRNIYGIKPGDVF---------WAAS 269
Query: 241 -LTWAVAAQ---------GGTNVC-----QRTVNAKEIFDNITRHKVTHFGGAPTVLNMI 285
+ W V G T V T +A + I + V APT + I
Sbjct: 270 DVGWVVGHSYIVYGPLLHGATTVLYEGKPVGTPDAGAYWRVIEEYGVNALFTAPTAIRAI 329
Query: 286 ANAPP 290
P
Sbjct: 330 RKQDP 334
|
PrpE catalyzes the first step of the 2-methylcitric acid cycle for propionate catabolism. It activates propionate to propionyl-CoA in a two-step reaction, which proceeds through a propionyl-AMP intermediate and requires ATP and Mg2+. In Salmonella enterica, the PrpE protein is required for growth of S. enterica on propionate and can substitute for the acetyl-CoA synthetase (Acs) enzyme during growth on acetate. PrpE can also activate acetate, 3HP, and butyrate to their corresponding CoA-thioesters, although with less efficiency. Length = 607 |
| >gnl|CDD|171961 PRK13295, PRK13295, cyclohexanecarboxylate-CoA ligase; Reviewed | Back alignment and domain information |
|---|
Score = 57.4 bits (139), Expect = 3e-09
Identities = 67/266 (25%), Positives = 101/266 (37%), Gaps = 31/266 (11%)
Query: 39 QYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAGAVLCTLNTRH 98
++T++E ++A GLA LG+ GDVV+ PN L+ GAVL L
Sbjct: 55 RFTYRELAALVDRVAVGLARLGVGRGDVVSCQLPNWWEFTVLYLACSRIGAVLNPLMPIF 114
Query: 99 DSAMVSVLLRHSEAKIIFV-------DYQLLPIAQGAFEILSKTSAKLPLL--VLVPECG 149
+S +L+H+E+K++ V D+ + + +LP L V+V
Sbjct: 115 RERELSFMLKHAESKVLVVPKTFRGFDHA---------AMARRLRPELPALRHVVVVGGD 165
Query: 150 EPVSTVASSSGNLEYESLLAIGKLREVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAY 209
S A +E + RP D L YTSGTT PKGV+ +
Sbjct: 166 GADSFEALLITP-AWEQEPDAPAILARLRP-GPDDVTQLIYTSGTTGEPKGVMHTANTLM 223
Query: 210 LNSLAAALFNEMG-----LMPTYLWCVPMFHCNGWCLTWAVAAQ-GGTNVCQRTVNAKEI 263
N + A +G LM + PM H G+ + G T V Q +
Sbjct: 224 ANIVPYAERLGLGADDVILMAS-----PMAHQTGFMYGLMMPVMLGATAVLQDIWDPARA 278
Query: 264 FDNITRHKVTHFGGAPTVLNMIANAP 289
+ I VT + L + A
Sbjct: 279 AELIRTEGVTFTMASTPFLTDLTRAV 304
|
Length = 547 |
| >gnl|CDD|213290 cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL) | Back alignment and domain information |
|---|
Score = 56.0 bits (135), Expect = 8e-09
Identities = 69/264 (26%), Positives = 101/264 (38%), Gaps = 49/264 (18%)
Query: 41 TWKETHQRCVKLASGLAHLGISPGDVVAALAPN----VPAMYELHFGVPMAGAVLCTLNT 96
T+ E R +A+ L G+ P VA +APN V A+ LH GAV +N
Sbjct: 30 TYSELRARVEGVAARLHARGVRPQQRVAVVAPNSVDAVIALLALH----RLGAVPALMNP 85
Query: 97 RHDSAMVSVLLRHSE--AKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGEPVST 154
R A ++ L++ E A +I VD Q++ + + +L L G
Sbjct: 86 RLKPAEIAELIKRGEMTAAVIAVDAQVMDAIFQSGSGVR-------VLALGDLVGLGEPE 138
Query: 155 VASSSGNLEYESLLAIGKLREVRRPKDECDPIALNYTSGTTSSPKGVICSHRGA-----Y 209
A G E + E P + YTSGTT PKG + R A +
Sbjct: 139 SA--------------GPPIEDPPREPE-QPAFVFYTSGTTGLPKGAVIPQRAAESRVLF 183
Query: 210 LNSLAAALF----NEMGLMPTYLWCVPMFHCNGWCLTWAVA-AQGGTNVCQRTVNAKEIF 264
+++ A +GLMP Y H G+ A A GT V + +
Sbjct: 184 MSTQAGLRHGRHNVVLGLMPLY-------HVIGFFAVLVAALALDGTYVVVEEFDPADAL 236
Query: 265 DNITRHKVTHFGGAPTVLNMIANA 288
I + +VT PT L+ +A A
Sbjct: 237 KLIEQERVTSLFATPTHLDALAAA 260
|
CBAL catalyzes the conversion of 4-chlorobenzoate (4-CB) to 4-chlorobenzoyl-coenzyme A (4-CB-CoA) by the two-step adenylation and thioester-forming reactions. 4-Chlorobenzoate (4-CBA) is an environmental pollutant derived from microbial breakdown of aromatic pollutants, such as polychlorinated biphenyls (PCBs), DDT, and certain herbicides. The 4-CBA degrading pathway converts 4-CBA to the metabolite 4-hydroxybezoate (4-HBA), allowing some soil-dwelling microbes to utilize 4-CBA as an alternate carbon source. This pathway consists of three chemical steps catalyzed by 4-CBA-CoA ligase, 4-CBA-CoA dehalogenase, and 4HBA-CoA thioesterase in sequential reactions. Length = 495 |
| >gnl|CDD|139538 PRK13390, PRK13390, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 55.4 bits (133), Expect = 1e-08
Identities = 64/266 (24%), Positives = 112/266 (42%), Gaps = 36/266 (13%)
Query: 29 DRPSVVYGDV--QYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPM 86
DRP+V+ + Q ++++ LA L G+ GDVVA L+ N P + +
Sbjct: 12 DRPAVIVAETGEQVSYRQLDDDSAALARVLYDAGLRTGDVVALLSDNSPEALVVLWAALR 71
Query: 87 AGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFE-ILSKTSAKLPLLVLV 145
+G + +N + ++ S A+++ +A A + + +K A LPL
Sbjct: 72 SGLYITAINHHLTAPEADYIVGDSGARVL--------VASAALDGLAAKVGADLPL---- 119
Query: 146 PECGEPVSTVASSSGNLEYESLLAIGKLREVRRPKDECDPIALNYTSGTTSSPKGV---- 201
+S G +E+ LA R +P C + L Y+SGTT PKG+
Sbjct: 120 -----RLSFGGEIDGFGSFEAALAGAGPRLTEQP---CGAVML-YSSGTTGFPKGIQPDL 170
Query: 202 ---ICSHRGAYLNSLAAALFNEMGLMPTYLWCVPMFHCNG--WCLTWAVAAQGGTNVCQR 256
G + ++A A ++ + Y P++H WC V A GGT V +
Sbjct: 171 PGRDVDAPGDPIVAIARAFYD-ISESDIYYSSAPIYHAAPLRWC--SMVHALGGTVVLAK 227
Query: 257 TVNAKEIFDNITRHKVTHFGGAPTVL 282
+A+ ++ R+++T PT+
Sbjct: 228 RFDAQATLGHVERYRITVTQMVPTMF 253
|
Length = 501 |
| >gnl|CDD|235923 PRK07059, PRK07059, Long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 55.0 bits (133), Expect = 2e-08
Identities = 64/229 (27%), Positives = 93/229 (40%), Gaps = 28/229 (12%)
Query: 17 ISFLERSAVVYRDRPSVVYGDVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPA 76
LE S Y DRP+ + T+ E + LA+ L G++ G VA + PNV
Sbjct: 26 ADLLEESFRQYADRPAFICMGKAITYGELDELSRALAAWLQSRGLAKGARVAIMMPNVLQ 85
Query: 77 MYELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTS 136
V AG V+ +N + + L+ S A+ I V L A ++L+KT+
Sbjct: 86 YPVAIAAVLRAGYVVVNVNPLYTPRELEHQLKDSGAEAIVV---LENFATTVQQVLAKTA 142
Query: 137 AKLPLLVLVPECGEP-------VSTVA----------SSSGNLEYESLLAIGKLREVRRP 179
K V+V G+ V+ V S G++ + LA G + +
Sbjct: 143 VK---HVVVASMGDLLGFKGHIVNFVVRRVKKMVPAWSLPGHVRFNDALAEGARQTFKPV 199
Query: 180 KDECDPIA-LNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPTY 227
K D +A L YT GTT KG HR N +A L E L P +
Sbjct: 200 KLGPDDVAFLQYTGGTTGVSKGATLLHR----NIVANVLQMEAWLQPAF 244
|
Length = 557 |
| >gnl|CDD|181644 PRK09088, PRK09088, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 54.8 bits (132), Expect = 2e-08
Identities = 54/254 (21%), Positives = 92/254 (36%), Gaps = 34/254 (13%)
Query: 39 QYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAGAVLCTLNTRH 98
++T+ E +LA+ L G G+ +A LA N + LHF GA+ LN R
Sbjct: 22 RWTYAELDALVGRLAAVLRRRGCVDGERLAVLARNSVWLVALHFACARVGAIYVPLNWRL 81
Query: 99 DSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVASS 158
++ + LL+ +E +++ D + A G ++ L + + EP T
Sbjct: 82 SASELDALLQDAEPRLLLGDDAV---AAGRTDVED-----LAAFIASADALEPADT---- 129
Query: 159 SGNLEYESLLAIGKLREVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALF 218
+ +TSGT+ PKGV+ S R + +
Sbjct: 130 -------------------PSIPPERVSLILFTSGTSGQPKGVMLSERNLQQTAHNFGVL 170
Query: 219 NEMGLMPTYLWCVPMFHCNGWCLTW-AVAAQGGTNVCQRTVNAKEIFDNITRHK--VTHF 275
+ ++L PMFH G + V A GG+ + K + +TH+
Sbjct: 171 GRVDAHSSFLCDAPMFHIIGLITSVRPVLAVGGSILVSNGFEPKRTLGRLGDPALGITHY 230
Query: 276 GGAPTVLNMIANAP 289
P + P
Sbjct: 231 FCVPQMAQAFRAQP 244
|
Length = 488 |
| >gnl|CDD|213280 cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase (also known as O-succinylbenzoate-CoA synthase, OSB-CoA synthetase, or MenE) | Back alignment and domain information |
|---|
Score = 54.1 bits (131), Expect = 2e-08
Identities = 32/111 (28%), Positives = 52/111 (46%), Gaps = 5/111 (4%)
Query: 190 YTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPTYLW--CVPMFHCNGWCLTWAVAA 247
+TSG+T PK V+ + G +L S + N +GL P W +P+FH +G +
Sbjct: 84 FTSGSTGKPKAVVHT-WGNHLASARGSAEN-LGLTPDDNWLLSLPLFHVSGLAIVMRSLL 141
Query: 248 QGGTNVCQRTVNAKEIFDNITRHKVTHFGGAPTVLN-MIANAPPVFENRFR 297
GG V +A+ I + + H VTH PT L ++ + + + R
Sbjct: 142 AGGALVLPDKFDAEAIAEALENHGVTHISLVPTQLQRLLESLGARWLSSLR 192
|
O-succinylbenzoic acid-CoA synthase catalyzes the coenzyme A (CoA)- and ATP-dependent conversion of o-succinylbenzoic acid to o-succinylbenzoyl-CoA. The reaction is the fourth step of the biosynthesis pathway of menaquinone (vitamin K2). In certain bacteria, menaquinone is used during fumarate reduction in anaerobic respiration. In cyanobacteria, the product of the menaquinone pathway is phylloquinone (2-methyl-3-phytyl-1,4-naphthoquinone), a molecule used exclusively as an electron transfer cofactor in Photosystem 1. In green sulfur bacteria and heliobacteria, menaquinones are used as loosely bound secondary electron acceptors in the photosynthetic reaction center. Length = 407 |
| >gnl|CDD|215189 PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1 | Back alignment and domain information |
|---|
Score = 54.2 bits (130), Expect = 3e-08
Identities = 61/230 (26%), Positives = 94/230 (40%), Gaps = 21/230 (9%)
Query: 14 LTPISFLERSAVVYRDRPSVVYGDV--QYTWKETHQRCVKLASGLAHLGISPGDVVAALA 71
LT F+ + A +Y D+ + V T+ E + + A L LG+ G VV +
Sbjct: 28 LTLPDFVLQDAELYADKVAFVEAVTGKAVTYGEVVRDTRRFAKALRSLGLRKGQVVVVVL 87
Query: 72 PNVPAMYELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEI 131
PNV + G+ AG V N +A+ S + + +EA +L+ +
Sbjct: 88 PNVAEYGIVALGIMAAGGVFSGANP---TALESEIKKQAEAA----GAKLIVTNDTNYGK 140
Query: 132 LSKTSAKLPLLVLVPECGEPVSTVASSSGNLEYESLLAIGKLREVRRPKDECDPIALNYT 191
+ LP++VL E + + LE E D C AL ++
Sbjct: 141 VK--GLGLPVIVLGEEK---IEGAVNWKELLEAADRAGDTSDNEEILQTDLC---ALPFS 192
Query: 192 SGTTSSPKGVICSHRGAYLNSLAAALFN---EMGLMPTYLWCVPMFHCNG 238
SGTT KGV+ +HR N L ++LF+ EM L +P FH G
Sbjct: 193 SGTTGISKGVMLTHRNLVAN-LCSSLFSVGPEMIGQVVTLGLIPFFHIYG 241
|
Length = 546 |
| >gnl|CDD|213301 cd05935, LC_FACS_like, Putative long-chain fatty acid CoA ligase | Back alignment and domain information |
|---|
Score = 53.1 bits (128), Expect = 6e-08
Identities = 23/83 (27%), Positives = 39/83 (46%)
Query: 39 QYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAGAVLCTLNTRH 98
T+ E + +LA L G+ GD VA N P ++ + AGAV+ +N +
Sbjct: 1 VITYAELLELVDRLAGLLQEKGVRKGDRVALYMQNSPQFVIAYYAILRAGAVVVPVNPMN 60
Query: 99 DSAMVSVLLRHSEAKIIFVDYQL 121
A + +L S A+++ V +L
Sbjct: 61 REAELEHILNDSGARVLIVGSEL 83
|
The members of this family are putative long-chain fatty acyl-CoA synthetases, which catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. Length = 430 |
| >gnl|CDD|213307 cd05941, MCS, Malonyl-CoA synthetase (MCS) | Back alignment and domain information |
|---|
Score = 53.0 bits (128), Expect = 6e-08
Identities = 28/118 (23%), Positives = 42/118 (35%), Gaps = 21/118 (17%)
Query: 184 DPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPTYLW----------CVPM 233
DP + YTSGTT PKGV+ +H L + A AL W +P+
Sbjct: 89 DPALIIYTSGTTGRPKGVVLTHGN--LAANARAL--------VEAWRWTASDVLLHALPL 138
Query: 234 FHCNGWCLTWAVA-AQGGTNVCQRTVNAKEIFDNITRHKVTHFGGAPTVLNMIANAPP 290
H +G G + + +E ++T F G PT+ +
Sbjct: 139 HHVHGLFNALHCPLWAGASVEFLPRFDPQERDALRLLPRITVFMGVPTIYTRLLEHYE 196
|
MCS catalyzes the formation of malonyl-CoA in a two-step reaction consisting of the adenylation of malonate with ATP, followed by malonyl transfer from malonyl-AMP to CoA. Malonic acid and its derivatives are the building blocks of polyketides and malonyl-CoA serves as the substrate of polyketide synthases. Malonyl-CoA synthetase has broad substrate tolerance and can activate a variety of malonyl acid derivatives. MCS may play an important role in biosynthesis of polyketides, the important secondary metabolites with therapeutic and agrochemical utility. Length = 430 |
| >gnl|CDD|139531 PRK13383, PRK13383, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 53.5 bits (128), Expect = 6e-08
Identities = 66/289 (22%), Positives = 104/289 (35%), Gaps = 42/289 (14%)
Query: 16 PISFLERSAVVYRDRPSVVYGDVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVP 75
P + L +A + R +++ D +++E + LA L G++PG V + N
Sbjct: 37 PYTLLAVTAARWPGRTAIIDDDGALSYRELQRATESLARRLTRDGVAPGRAVGVMCRNGR 96
Query: 76 AMYELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKT 135
F V + GA + ++T S ++ LR + D + GA +
Sbjct: 97 GFVTAVFAVGLLGADVVPISTEFRSDALAAALRAHHISTVVADNEFAERIAGADD----- 151
Query: 136 SAKLPLLVLVPECGEPVSTVASSSGNLEYESLLAIGKLREVRRPKDECDPIALNYTSGTT 195
+ V+ +P + A SG RP + TSGTT
Sbjct: 152 ----AVAVI-----DPATAGAEESGG----------------RPAVAAPGRIVLLTSGTT 186
Query: 196 SSPKGV-----ICSHRGAYLNSLAAALFNEMGLMPTYLWCVPMFHCNGWCLTWAVAAQGG 250
PKGV + S G ++ L + +PMFH G + A GG
Sbjct: 187 GKPKGVPRAPQLRSAVGVWVTILDRTRLRTGSRISV---AMPMFHGLGLGMLMLTIALGG 243
Query: 251 TNVCQRTVNAKEIFDNITRHKVTHFGGAPTVLNMIANAPPVFENRFRGR 299
T + R +A+ + H+ F P VL I PP R R R
Sbjct: 244 TVLTHRHFDAEAALAQASLHRADAFTAVPVVLARILELPP----RVRAR 288
|
Length = 516 |
| >gnl|CDD|213277 cd05909, AAS_C, C-terminal domain of the acyl-acyl carrier protein synthetase (also called 2-acylglycerophosphoethanolamine acyltransferase, Aas) | Back alignment and domain information |
|---|
Score = 52.2 bits (126), Expect = 1e-07
Identities = 36/119 (30%), Positives = 49/119 (41%), Gaps = 6/119 (5%)
Query: 173 LREVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPTYLWCVP 232
LR DP + +TSG+ PKGV+ SHR N A ++ L +P
Sbjct: 135 LRLFLAGAKPDDPAVILFTSGSEGLPKGVVLSHRNLLANIDQIAAVIDLNTEDVLLGALP 194
Query: 233 MFHCNGWCLT---WAVAAQGGTNVCQRT-VNAKEIFDNITRHKVTHFGGAPTVLNMIAN 287
+FH G LT G V ++AK+I + I +K T G PT L A
Sbjct: 195 LFHAFG--LTVTLLLPLLTGLRVVYYPNPLDAKKIAELIRDYKATILCGTPTFLRGYAR 251
|
Acyl-acyl carrier protein synthase (Aas) is a membrane protein responsible for a minor pathway of incorporating exogenous fatty acids into membrane phospholipids. Its in vitro activity is characterized by the ligation of free fatty acids between 8 and 18 carbons in length to the acyl carrier protein sulfydryl group (ACP-SH) in the presence of ATP and Mg2+. However, its in vivo function is as a 2-acylglycerophosphoethanolamine (2-acyl-GPE) acyltransferase. The reaction occurs in two steps: the acyl chain is first esterified to acyl carrier protein (ACP) via a thioester bond, followed by a second step where the acyl chain is transferred to a 2-acyllysophospholipid, thus completing the transacylation reaction. This model represents the C-terminal domain of the enzyme, which belongs to the class I adenylate-forming enzyme family, including acyl-CoA synthetases. Length = 489 |
| >gnl|CDD|213306 cd05940, FATP_FACS, Fatty acid transport proteins (FATP) play dual roles as fatty acid transporters and its activation enzymes | Back alignment and domain information |
|---|
Score = 51.1 bits (123), Expect = 2e-07
Identities = 24/89 (26%), Positives = 36/89 (40%), Gaps = 14/89 (15%)
Query: 37 DVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAGAVLCTLNT 96
D + ++ E + + A L LG+ GDVVA L N P + GAV +NT
Sbjct: 1 DRRLSYAEFNAWANRYAHALRALGVKKGDVVALLMENRPEYLLAWLALAKLGAVAALINT 60
Query: 97 -------RHDSAMVSVLLRHSEAKIIFVD 118
H + S+A+ + VD
Sbjct: 61 TQRGEVLAHC-------INVSDARAVIVD 82
|
Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. At least five copies of FATPs are identified in mammalian cells. This family also includes prokaryotic FATPs. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 444 |
| >gnl|CDD|213280 cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase (also known as O-succinylbenzoate-CoA synthase, OSB-CoA synthetase, or MenE) | Back alignment and domain information |
|---|
Score = 51.4 bits (124), Expect = 2e-07
Identities = 24/59 (40%), Positives = 30/59 (50%)
Query: 39 QYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAGAVLCTLNTR 97
T++E QR +LA LA LG+ GD VA LA N L + GAV+ LN R
Sbjct: 1 SLTFQELDQRVSQLAEQLAALGVRRGDRVALLAKNSIEFLLLFLALLRLGAVVLPLNPR 59
|
O-succinylbenzoic acid-CoA synthase catalyzes the coenzyme A (CoA)- and ATP-dependent conversion of o-succinylbenzoic acid to o-succinylbenzoyl-CoA. The reaction is the fourth step of the biosynthesis pathway of menaquinone (vitamin K2). In certain bacteria, menaquinone is used during fumarate reduction in anaerobic respiration. In cyanobacteria, the product of the menaquinone pathway is phylloquinone (2-methyl-3-phytyl-1,4-naphthoquinone), a molecule used exclusively as an electron transfer cofactor in Photosystem 1. In green sulfur bacteria and heliobacteria, menaquinones are used as loosely bound secondary electron acceptors in the photosynthetic reaction center. Length = 407 |
| >gnl|CDD|213318 cd05971, MACS_like_3, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS) | Back alignment and domain information |
|---|
Score = 52.0 bits (125), Expect = 2e-07
Identities = 24/80 (30%), Positives = 33/80 (41%)
Query: 40 YTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAGAVLCTLNTRHD 99
YT+ + +LA+ L LG+ GD V P P H V GAV L+
Sbjct: 7 YTFGQLKDASNRLANALRELGVERGDRVGVYLPQSPETAIAHLAVYKLGAVSVPLSVLFG 66
Query: 100 SAMVSVLLRHSEAKIIFVDY 119
V LR S A+++ D
Sbjct: 67 PDAVEHRLRDSGARVLVTDG 86
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 439 |
| >gnl|CDD|213309 cd05944, FACL_like_4, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 51.5 bits (124), Expect = 2e-07
Identities = 34/114 (29%), Positives = 48/114 (42%), Gaps = 11/114 (9%)
Query: 187 ALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPTYLWCVPMFHCNG---WCLTW 243
A +T GTT +PK SHR N+ AAL + +G L +P+FH G L
Sbjct: 6 AYFHTGGTTGAPKLARHSHRNEVANAWMAALLSGLGPGDVLLNGLPLFHVGGAIVTGL-- 63
Query: 244 AVAAQGGTNVCQRTVNAK------EIFDNITRHKVTHFGGAPTVLNMIANAPPV 291
A A+G T V + + + R++VT PTVL + P
Sbjct: 64 APLARGATVVLPTPSGFRNPAVVANFWKIVERYRVTLLSAVPTVLAALLQVPLG 117
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 359 |
| >gnl|CDD|178452 PLN02861, PLN02861, long-chain-fatty-acid-CoA ligase | Back alignment and domain information |
|---|
Score = 51.0 bits (122), Expect = 3e-07
Identities = 45/174 (25%), Positives = 68/174 (39%), Gaps = 11/174 (6%)
Query: 38 VQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAGAVLCTLNTR 97
V T+KE + +++ S + G++PGD N P G L
Sbjct: 76 VWLTYKEVYDAAIRIGSAIRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQGITYVPLYDT 135
Query: 98 HDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVAS 157
+ V ++ H+E I FV + L K S+ L +V G+ S
Sbjct: 136 LGANAVEFIINHAEVSIAFVQESKIS---SILSCLPKCSSNLKTIV---SFGDVSSEQKE 189
Query: 158 SSGNL-----EYESLLAIGKLREVRRPKDECDPIALNYTSGTTSSPKGVICSHR 206
+ L +E +G L PK + D + YTSGTT PKGVI ++R
Sbjct: 190 EAEELGVSCFSWEEFSLMGSLDCELPPKQKTDICTIMYTSGTTGEPKGVILTNR 243
|
Length = 660 |
| >gnl|CDD|213285 cd05918, A_NRPS_SidN3_like, The adenylation (A) domain of siderophore-synthesizing nonribosomal peptide synthetases (NRPS) | Back alignment and domain information |
|---|
Score = 50.7 bits (122), Expect = 4e-07
Identities = 57/272 (20%), Positives = 94/272 (34%), Gaps = 79/272 (29%)
Query: 23 SAVVYRDRPSVVYGDVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHF 82
A + D +V + D T+ E +R KLA L LG+ PGD+VA P +Y
Sbjct: 1 RAQTHPDAVAVDFWDGSLTYAELDRRANKLAHHLISLGVRPGDIVALCLERSPWLYVAIL 60
Query: 83 GVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLL 142
V AGA ++ P+ + F I+ + A +
Sbjct: 61 AVLKAGAAYVPIDPSA------------------------PVERLQF-IIEDSGATV--- 92
Query: 143 VLVPECGEPVSTVASSSGNLEYESLLAIGKLREVRRPKDECDPIALNYTSGTTSSPKGVI 202
V +SS + DP + YTSG+T PKGV+
Sbjct: 93 ------------VLTSSPD----------------------DPAYVIYTSGSTGKPKGVV 118
Query: 203 CSHRGAYLNSLAAALFNEMGLMPT------YLWCVPMF--HCNGWCLTWAVAAQGGTNVC 254
+HR ++ L E ++ + F T GGT V
Sbjct: 119 ITHR-----NICNFLRAEGAILGIRPGDRVLQFASIAFDVSILEIFTTLLA---GGTLVI 170
Query: 255 -QRTVNAKEIFDNITRHKVTHFGGAPTVLNMI 285
+ +++ + + R +VT P++L ++
Sbjct: 171 PPEELRLEDLAEFLNRLRVTVAHLTPSLLALL 202
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family of siderophore-synthesizing NRPS includes the third adenylation domain of SidN from the endophytic fungus Neotyphodium lolii, ferrichrome siderophore synthetase, HC-toxin synthetase, and enniatin synthase. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 447 |
| >gnl|CDD|178049 PLN02430, PLN02430, long-chain-fatty-acid-CoA ligase | Back alignment and domain information |
|---|
Score = 50.6 bits (121), Expect = 5e-07
Identities = 55/212 (25%), Positives = 84/212 (39%), Gaps = 29/212 (13%)
Query: 41 TWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPM----AGAVLCT-LN 95
T+KE ++ +++ S L G PG V N P + V M A +++C L
Sbjct: 78 TYKEVYEEVLQIGSALRASGAEPGSRVGIYGSNCP-----QWIVAMEACAAHSLICVPLY 132
Query: 96 TRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGEPVSTV 155
V ++ H+E +FV + + + E K++ +L +V E S
Sbjct: 133 DTLGPGAVDYIVDHAEIDFVFVQDKKI---KELLEPDCKSAKRLKAIVSFTSVTEEESDK 189
Query: 156 ASSSGNLEY--ESLLAIGKLREVRRPKDECDPIALN-----YTSGTTSSPKGVICSHRGA 208
AS G Y L +GK P + P L+ YTSGT+ PKGV+ +H
Sbjct: 190 ASQIGVKTYSWIDFLHMGK----ENPSETNPPKPLDICTIMYTSGTSGDPKGVVLTHEAV 245
Query: 209 YLNSLAAALFNE-----MGLMPTYLWCVPMFH 235
LF E M YL +P+ H
Sbjct: 246 ATFVRGVDLFMEQFEDKMTHDDVYLSFLPLAH 277
|
Length = 660 |
| >gnl|CDD|213286 cd05919, BCL_like, Benzoate CoA ligase (BCL) and similar adenylate forming enzymes | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 5e-07
Identities = 25/89 (28%), Positives = 40/89 (44%)
Query: 30 RPSVVYGDVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAGA 89
+ + G+ T++E H + A+ L LG+SPGD V L P+ P + AGA
Sbjct: 1 KTAFYCGEQSLTYRELHDLANRFANVLRALGVSPGDRVLLLLPDSPELVAAFLACLKAGA 60
Query: 90 VLCTLNTRHDSAMVSVLLRHSEAKIIFVD 118
V LN + +L S A ++ +
Sbjct: 61 VAVALNPLLTPQDLEHILDDSGAALLVTE 89
|
This family contains benzoate CoA ligase (BCL) and related ligases that catalyze the acylation of benzoate derivatives, 2-aminobenzoate and 4-hydroxybenzoate. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Xenobiotic aromatic compounds are also a major class of man-made pollutants. Some bacteria use benzoate as the sole source of carbon and energy through benzoate degradation. Benzoate degradation starts with its activation to benzoyl-CoA by benzoate CoA ligase. The reaction catalyzed by benzoate CoA ligase proceeds via a two-step process; the first ATP-dependent step forms an acyl-AMP intermediate, and the second step forms the acyl-CoA ester with release of the AMP. Length = 436 |
| >gnl|CDD|213294 cd05928, MACS_euk, Eukaryotic Medium-chain acyl-CoA synthetase (MACS or ACSM) | Back alignment and domain information |
|---|
Score = 50.2 bits (120), Expect = 6e-07
Identities = 57/240 (23%), Positives = 95/240 (39%), Gaps = 36/240 (15%)
Query: 60 GISPGDVVAALAPNVPAMYELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDY 119
G+ GD VA + P VP + ++ G V + + + L+ S+AK I
Sbjct: 63 GLQRGDRVAVILPRVPEWWLVNVACIRTGLVFIPGTIQLTAKDILYRLQASKAKCIVTSD 122
Query: 120 QLLPIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVASSSGNLEYESLLAIGKLREVRRP 179
+L P A + ++ L +LV E S G L ++ LL +
Sbjct: 123 ELAP----AVDSIASECPSLKTKLLVSE--------HSRDGWLNFKELL------KEAST 164
Query: 180 KDEC------DPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPT-YLWCVP 232
+ C +P+A+ +TSGTT PK SH + L + L P+ +W +
Sbjct: 165 EHTCVKTKSQEPMAIYFTSGTTGFPKMAEHSH-SSLGLGLKVNGRYWLDLTPSDIMWNMS 223
Query: 233 MFHCNGWCLT--WAVAA---QGGTNVCQR--TVNAKEIFDNITRHKVTHFGGAPTVLNMI 285
GW W++ + QG + K I ++++ +T F APTV M+
Sbjct: 224 D---TGWIKAAIWSLFSPWIQGACVFVHHLPRFDPKVILQTLSKYPITTFCSAPTVYRML 280
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. MACS enzymes are localized to mitochondria. Two murine MACS family proteins are found in liver and kidney. In rodents, a MACS member is detected particularly in the olfactory epithelium and is called O-MACS. O-MACS demonstrates substrate preference for the fatty acid lengths of C6-C12. Length = 530 |
| >gnl|CDD|236403 PRK09192, PRK09192, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 6e-07
Identities = 48/185 (25%), Positives = 66/185 (35%), Gaps = 34/185 (18%)
Query: 39 QYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAGAV-----LCT 93
++ R A L LG+ PGD VA +A E F AG V L
Sbjct: 49 ALPYQTLRARAEAGARRLLALGLKPGDRVALIAETDGDFVEAFFACQYAGLVPVPLPLPM 108
Query: 94 LNTRHDS--AMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGEP 151
+S A + +L ++ I +LLP A T L VL
Sbjct: 109 GFGGRESYIAQLRGMLASAQPAAIITPDELLPWVNEA------THGNPLLHVLSHA---- 158
Query: 152 VSTVASSSGNLEYESLLAIGKLREVRRPKDECDPIA-LNYTSGTTSSPKGVICSHRGAYL 210
+V P+ D IA L Y+SG+T P+GVI +HR A +
Sbjct: 159 ---------------WFKALPEADVALPRPTPDDIAYLQYSSGSTRFPRGVIITHR-ALM 202
Query: 211 NSLAA 215
+L A
Sbjct: 203 ANLRA 207
|
Length = 579 |
| >gnl|CDD|213292 cd05926, FACL_fum10p_like, Subfamily of fatty acid CoA ligase (FACL) similar to Fum10p of Gibberella moniliformis | Back alignment and domain information |
|---|
Score = 49.5 bits (119), Expect = 6e-07
Identities = 30/105 (28%), Positives = 51/105 (48%), Gaps = 9/105 (8%)
Query: 190 YTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMP---TYLWCV-PMFHCNGWCLT-WA 244
+TSGTT PKGV +H+ ++ A L P V P+FH +G ++ A
Sbjct: 9 HTSGTTGRPKGVPLTHKNLLASARNIA--KSHKLTPSDRCL--NVMPLFHIHGLIVSLLA 64
Query: 245 VAAQGGTNVCQRTVNAKEIFDNITRHKVTHFGGAPTVLNMIANAP 289
GG+ VC +A + +D+I +++VT + PT+ ++
Sbjct: 65 TLLAGGSVVCPPKFSASKFWDDIAKYRVTWYSAVPTIHQILLKTA 109
|
FACL catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Fum10p is a fatty acid CoA ligase involved in the synthesis of fumonisin, a polyketide mycotoxin, in Gibberella moniliformis. Length = 345 |
| >gnl|CDD|213310 cd05945, DltA, D-alanine:D-alanyl carrier protein ligase (DltA) | Back alignment and domain information |
|---|
Score = 49.5 bits (119), Expect = 1e-06
Identities = 25/92 (27%), Positives = 39/92 (42%)
Query: 27 YRDRPSVVYGDVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPM 86
+ DRP++V G T+ E +R +LA+ L LG GD VA P Y
Sbjct: 4 HPDRPALVVGGDTLTYAELKERADRLAARLLALGGRAGDPVAVYGHKSPDAYAAILACLK 63
Query: 87 AGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVD 118
AGA L+ + ++ +L + + D
Sbjct: 64 AGAAYVPLDPSQPAERIAKILEAAGPAALVAD 95
|
DltA belongs to the class I AMP-forming adenylation domain superfamily, which also includes acetyl-CoA synthetase, luciferase, and the adenylation domains of non-ribosomal synthetases. It catalyzes the two-step activation reaction of D-alanine: the formation of a substrate-AMP molecule as an intermediate, and then the transfer of the amino acid adenylate to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram-positive bacteria. Length = 447 |
| >gnl|CDD|213275 cd05907, VL_LC_FACS_like, Long-chain fatty acid CoA synthetases and Bubblegum-like very long-chain fatty acid CoA synthetases | Back alignment and domain information |
|---|
Score = 48.7 bits (117), Expect = 2e-06
Identities = 24/106 (22%), Positives = 40/106 (37%), Gaps = 3/106 (2%)
Query: 184 DPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPTYLWCVPMFHC-NGWCLT 242
D L YTSGTT +PKGV+ +HR + A + L +P+ H
Sbjct: 89 DLATLIYTSGTTGNPKGVMLTHRNLLAQAAALLEVIPLSPGDRVLSFLPLAHVFEQRLGE 148
Query: 243 WAVAAQGGTNVCQRTVNAKEIFDNITRHKVTHFGGAPTVLNMIANA 288
+ + G + + + +++ + T F P V I
Sbjct: 149 YLPLSSGARVNF--AESPETLLEDLREVRPTVFFAVPRVWEKIYAG 192
|
This family includes long-chain fatty acid (C12-C20) CoA synthetases and Bubblegum-like very long-chain (>C20) fatty acid CoA synthetases. FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Eukaryotes generally have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Drosophila melanogaster mutant bubblegum (BGM) have elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene later named bubblegum. The human homolog (hsBG) of bubblegum has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 456 |
| >gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 48.4 bits (115), Expect = 3e-06
Identities = 60/270 (22%), Positives = 96/270 (35%), Gaps = 47/270 (17%)
Query: 29 DRPSVVYGDVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAG 88
+ +VV+GD ++ E R +LA L G+ P VA A + V AG
Sbjct: 2018 EAIAVVFGDQHLSYAELDSRANRLAHRLRARGVGPEVRVAIAAERSFELVVALLAVLKAG 2077
Query: 89 AVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQL---LPIAQGAFEILSKTSAKLPLLVLV 145
L+ + + ++ +L S A ++ L LP+ G + A+
Sbjct: 2078 GAYVPLDPNYPAERLAYMLEDSGAALLLTQRHLLERLPLPAGVARLPLDRDAEW------ 2131
Query: 146 PECGEPVSTVASSSGNLEYESLLAIGKLREVRRPKDECDPIALNYTSGTTSSPKGVICSH 205
+ + V + NL Y + YTSG+T PKGV SH
Sbjct: 2132 ADYPDTAPAVQLAGENLAY-----------------------VIYTSGSTGLPKGVAVSH 2168
Query: 206 RGAYLNSLAAALFNEMGLMPTYLWCVPMFHCNGWCLTWAVAAQGGTNVCQRTV---NAKE 262
+ AA E+ L + F +G W G V R + ++
Sbjct: 2169 GALVAHCQAAGERYELSPADCELQFMS-FSFDGAHEQWFHPLLNGARVLIRDDELWDPEQ 2227
Query: 263 IFDNITRHKVTHFGGAPTVLNMIANAPPVF 292
++D + RH VT I + PPV+
Sbjct: 2228 LYDEMERHGVT-----------ILDFPPVY 2246
|
Length = 5163 |
| >gnl|CDD|132249 TIGR03205, pimA, dicarboxylate--CoA ligase PimA | Back alignment and domain information |
|---|
Score = 47.6 bits (113), Expect = 4e-06
Identities = 69/290 (23%), Positives = 112/290 (38%), Gaps = 30/290 (10%)
Query: 19 FLERSAVVYRDRPSVVYGDVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMY 78
L ++A Y RP++ + D T+ E A+ L G VA N P
Sbjct: 26 LLSKAAADYGPRPALEFRDRPITYTELEAMAETAAAALLRAGYGKDASVALYLGNTPDHP 85
Query: 79 ELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVD--YQLLPIAQGAFEILSKTS 136
FG AGA + L+ +S L S A+++ LLP+A E
Sbjct: 86 INFFGALKAGARVVHLSPLDGERALSHKLSDSGARLLITSDLAALLPMALKFLE-----K 140
Query: 137 AKLPLLVLVP-----ECGEPVSTVASSSGNLEYESLLAIGKLREVRRPKDECDPIA-LNY 190
L L++ + G P + + + + Y + G P D +A L Y
Sbjct: 141 GLLDRLIVCEDDNWGKVGTPQAPIPADPRIVTYADFVK-GAAAPAEWPAVTPDDVALLQY 199
Query: 191 TSGTTSSPKGVICSHRGAYLNSLAAALFN--------EMGLMPTYLWCVPMFHCNGWCLT 242
T GTT PKG + +H L S A ++++ G + + +P+FH + LT
Sbjct: 200 TGGTTGLPKGAMLTH--GNLTS-AVSIYDVWGKPSRATRGDVERVICVLPLFHI--YALT 254
Query: 243 WAVAA---QGGTNVCQRTVNAKEIFDNITRHKVTHFGGAPTVLNMIANAP 289
+ +G + + +F +I + T F G PT+ +AN P
Sbjct: 255 VILLRSLRRGDLISLHQRFDVAAVFRDIEEKRATVFPGVPTMWIALANDP 304
|
PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids. Length = 541 |
| >gnl|CDD|213303 cd05937, FATP_chFAT1_like, Uncharacterized subfamily of bifunctional fatty acid transporter/very-long-chain acyl-CoA synthetase in fungi | Back alignment and domain information |
|---|
Score = 47.5 bits (113), Expect = 4e-06
Identities = 30/113 (26%), Positives = 46/113 (40%), Gaps = 5/113 (4%)
Query: 181 DECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPTYLW--CVPMFHCNG 238
D DP AL YTSGTT PKG S R + S + +++ L C+P++H
Sbjct: 85 DPDDPAALIYTSGTTGLPKGCAISWRRTLVTSNPLS--HDLNLQFPDRTYTCMPLYHGTA 142
Query: 239 WCL-TWAVAAQGGTNVCQRTVNAKEIFDNITRHKVTHFGGAPTVLNMIANAPP 290
L GGT R +A + + ++ + T + + PP
Sbjct: 143 AFLGLCYCLGSGGTLCLSRKFSASQFWKDVRDSEATIIQYVGELCRYLLATPP 195
|
Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Members of this family are fungal FATPs, including FAT1 from Cochliobolus heterostrophus. Length = 468 |
| >gnl|CDD|213323 cd12115, A_NRPS_Sfm_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Saframycin A gene cluster from Streptomyces lavendulae | Back alignment and domain information |
|---|
Score = 47.3 bits (113), Expect = 5e-06
Identities = 25/100 (25%), Positives = 43/100 (43%)
Query: 19 FLERSAVVYRDRPSVVYGDVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMY 78
+E A D +VV GD T+ E ++R +LA+ L G+ P V P +
Sbjct: 4 LVEAQAERTPDAIAVVCGDESLTYAELNRRANRLAARLRAAGVGPESRVGVCLRRSPDLV 63
Query: 79 ELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVD 118
V AGA L+ + ++ +L + A+++ D
Sbjct: 64 VALLAVLKAGAAYVPLDPAYPPERLAYILEDAGARLVLTD 103
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the saframycin A gene cluster from Streptomyces lavendulae which implicates the NRPS system for assembling the unusual tetrapeptidyl skeleton in an iterative manner. It also includes saframycin Mx1 produced by Myxococcus xanthus NRPS. Length = 449 |
| >gnl|CDD|213315 cd05968, AACS_like, Uncharacterized acyl-CoA synthetase subfamily similar to Acetoacetyl-CoA synthetase | Back alignment and domain information |
|---|
Score = 47.3 bits (113), Expect = 6e-06
Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 8/82 (9%)
Query: 39 QYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVP----AMYELHFGVPMAGAVLCTL 94
+T+ E + +LASGLA LG+ GD V P +P A+ + GA+ +
Sbjct: 7 TWTYSELAREVNRLASGLAALGLGKGDRVGIYMPMIPEAVVALL----AIAKIGAIAVPI 62
Query: 95 NTRHDSAMVSVLLRHSEAKIIF 116
+ V+ L+ +EAK++
Sbjct: 63 FSGFGPDAVATRLQDAEAKVLI 84
|
This uncharacterized acyl-CoA synthetase family is highly homologous to acetoacetyl-CoA synthetase. However, the proteins in this family exist in only bacteria and archaea. AACS is a cytosolic ligase that specifically activates acetoacetate to its coenzyme A ester by a two-step reaction. Acetoacetate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is the first step of the mevalonate pathway of isoprenoid biosynthesis via isopentenyl diphosphate. Isoprenoids are a large class of compounds found in all living organisms. Length = 474 |
| >gnl|CDD|236363 PRK09029, PRK09029, O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 46.0 bits (110), Expect = 1e-05
Identities = 58/264 (21%), Positives = 93/264 (35%), Gaps = 52/264 (19%)
Query: 24 AVVYRDRPSVVYGDVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFG 83
A V ++ D TW++ R +LA+G A G+ G VA N P
Sbjct: 13 AQVRPQAIALRLNDEVLTWQQLCARIDQLAAGFAQQGVVEGSGVALRGKNSPET------ 66
Query: 84 VPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLV 143
+L L LL+ A+++ ++ Q LP L
Sbjct: 67 ------LLAYL----------ALLQ-CGARVLPLNPQ-LPQPL--------------LEE 94
Query: 144 LVPECGEPVSTVASSSGNLEYESLLAIGKLREVRRPKDECDPIAL---NYTSGTTSSPKG 200
L+P + G + +L ++ P L TSG+T PK
Sbjct: 95 LLPSLT--LDFALVLEGENTFSALTSLHLQLVEGAHAVAWQPQRLATMTLTSGSTGLPKA 152
Query: 201 VICSHRGAYLNSLAAALFNEMGLMP--TYLWCVPMFHCNGWCLTWAVAAQGGTNVCQRTV 258
+ + + A+L S A + + M ++L +P+FH +G + W G T V V
Sbjct: 153 AVHTAQ-AHLAS-AEGVLSLMPFTAQDSWLLSLPLFHVSGQGIVWRWLYAGATLV----V 206
Query: 259 NAKEIFDNITRHKVTHFGGAPTVL 282
K+ + TH PT L
Sbjct: 207 RDKQPLEQALA-GCTHASLVPTQL 229
|
Length = 458 |
| >gnl|CDD|213289 cd05922, FACL_like_6, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 45.7 bits (109), Expect = 1e-05
Identities = 35/125 (28%), Positives = 50/125 (40%), Gaps = 21/125 (16%)
Query: 184 DPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPTYL--------WCV-PMF 234
D A+ YTSG+T PKGV+ SHR N A A + YL V P
Sbjct: 3 DLAAIIYTSGSTGEPKGVMLSHR----NLTAGA-----RSIAQYLELTEDDRILAVLPFS 53
Query: 235 HCNG-WCLTWAVAAQGGTNVCQRT-VNAKEIFDNITRHKVTHFGGAPTVLNMIANAPPVF 292
G L A GGT V + +++ ++ + ++T F G PT + P+
Sbjct: 54 FDYGLSQLLTAFRV-GGTLVLESRFAFPRDVLKHLAKERITGFAGVPTTWAQLLRLDPLA 112
Query: 293 ENRFR 297
F
Sbjct: 113 REDFP 117
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 350 |
| >gnl|CDD|236443 PRK09274, PRK09274, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 46.0 bits (110), Expect = 1e-05
Identities = 69/290 (23%), Positives = 105/290 (36%), Gaps = 53/290 (18%)
Query: 21 ERSAVVYRDRPSVVYGDVQY---TWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAM 77
++ AV G + Y ++ E R +A GL GI G +
Sbjct: 21 DQLAVAVPGGRGA-DGKLAYDELSFAELDARSDAIAHGLNAAGIGRGMRAVLMVTPSLEF 79
Query: 78 YELHFGVPMAGAVLCTLNTRHDSAM-VSVL---LRHSEAKIIFVDYQLLPIAQGAFEILS 133
+ L F + AGAV + D M + L L ++ F+ +P A A +
Sbjct: 80 FALTFALFKAGAVPVLV----DPGMGIKNLKQCLAEAQPDA-FIG---IPKAHLARRLFG 131
Query: 134 KTSAKLPLLVLVPECGEPVSTV--ASSSGNLEYESLLAIGKLREVR-RPKDECDPIALNY 190
K + LV TV G +LL G D A+ +
Sbjct: 132 W--GKPSVRRLV--------TVGGRLLWGGTTLATLLRDGAAAPFPMADLAPDDMAAILF 181
Query: 191 TSGTTSSPKGVICSHRGAYLNSLAA---ALFNEMGLMP--TYLWCVPMFHCNGWCLTWAV 245
TSG+T +PKGV+ +H A AL + G+ P L P+F G L
Sbjct: 182 TSGSTGTPKGVVYTHG-----MFEAQIEALREDYGIEPGEIDLPTFPLFALFGPAL---- 232
Query: 246 AAQGGTNV-------CQRTVNAKEIFDNITRHKVTHFGGAPTVLNMIANA 288
G T+V TV+ ++F I R+ VT+ G+P +L +
Sbjct: 233 ---GMTSVIPDMDPTRPATVDPAKLFAAIERYGVTNLFGSPALLERLGRY 279
|
Length = 552 |
| >gnl|CDD|236175 PRK08180, PRK08180, feruloyl-CoA synthase; Reviewed | Back alignment and domain information |
|---|
Score = 45.3 bits (108), Expect = 2e-05
Identities = 48/186 (25%), Positives = 70/186 (37%), Gaps = 44/186 (23%)
Query: 41 TWKETHQRCVKLASGLAHLGISPGDVVAALAPN-----VPAMYELHFGVPMAGAVLCTLN 95
T+ E +R +A L G+S + L+ N + A+ ++ GVP A V
Sbjct: 71 TYAEALERVRAIAQALLDRGLSAERPLMILSGNSIEHALLALAAMYAGVPYA-PV----- 124
Query: 96 TRHDSAMVSVL------LRHS----EAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLV 145
S S++ LRH ++F D AF A L +V
Sbjct: 125 ----SPAYSLVSQDFGKLRHVLELLTPGLVFAD------DGAAFA-----RA---LAAVV 166
Query: 146 PECGEPVSTVASSSG--NLEYESLLAIGKLREVRRPKDECDP--IA-LNYTSGTTSSPKG 200
P E V+ + G + +LLA V P IA +TSG+T PK
Sbjct: 167 PADVEVVAVRGAVPGRAATPFAALLATPPTAAVDAAHAAVGPDTIAKFLFTSGSTGLPKA 226
Query: 201 VICSHR 206
VI +HR
Sbjct: 227 VINTHR 232
|
Length = 614 |
| >gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 3e-05
Identities = 62/300 (20%), Positives = 100/300 (33%), Gaps = 41/300 (13%)
Query: 6 RCSA-NYVPLTPISFLERSAVVYRDRPSVVYGDVQYTWKETHQRCVKLASGLAHLGISPG 64
A Y P +E A + +RP++V+G+ ++ E +++ +LA L G+ P
Sbjct: 503 NAPATEYAPDCVHQLIEAQARQHPERPALVFGEQVLSYAELNRQANRLAHVLIAAGVGPD 562
Query: 65 DVVAALAPNVPAMYELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQL--- 121
+V M V AG L+ + ++ +L S +++ L
Sbjct: 563 VLVGIAVERSIEMVVGLLAVLKAGGAYVPLDPEYPQDRLAYMLDDSGVRLLLTQSHLLAQ 622
Query: 122 LPIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVASSSGNLEYESLLAIGKLREVRRPKD 181
LP+ G + A L + VA NL Y I
Sbjct: 623 LPVPAGLRSLCLDEPADL-----LCGYSGHNPEVALDPDNLAY----VI----------- 662
Query: 182 ECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPTYLWCV---PMFHCNG 238
YTSG+T PKGV SH L + + + L + F
Sbjct: 663 --------YTSGSTGQPKGVAISHGA--LANYVCVIAERLQLAADDSMLMVSTFAFDLGV 712
Query: 239 WCLTWAVAAQGGTNVC---QRTVNAKEIFDNITRHKVTHFGGAPTVLNMIANAPPVFENR 295
L A+A+ G T +A+ + VT P+ L + A V R
Sbjct: 713 TELFGALAS-GATLHLLPPDCARDAEAFAALMADQGVTVLKIVPSHLQALLQASRVALPR 771
|
Length = 3956 |
| >gnl|CDD|213321 cd05974, MACS_like_1, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS) | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 5e-05
Identities = 31/112 (27%), Positives = 45/112 (40%), Gaps = 19/112 (16%)
Query: 184 DPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPTYLWCVPMFHCN------ 237
DPI L +TSGTT PK V+ +H + L+ + +GL P + H N
Sbjct: 85 DPILLYFTSGTTGLPKLVLHTHVSYPVGHLSTMYW--IGLQPGDI------HLNISSPGW 136
Query: 238 ---GWCLTWAVAAQGGT--NVCQRTVNAKEIFDNITRHKVTHFGGAPTVLNM 284
W +A G T + +A+ + + VT F PTV M
Sbjct: 137 AKHAWSSFFAPWNAGATVFGINYPRFDARRYLGALEKFGVTTFCAPPTVWRM 188
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 433 |
| >gnl|CDD|213296 cd05930, A_NRPS, The adenylation domain of nonribosomal peptide synthetases (NRPS) | Back alignment and domain information |
|---|
Score = 44.4 bits (106), Expect = 5e-05
Identities = 29/109 (26%), Positives = 47/109 (43%), Gaps = 15/109 (13%)
Query: 190 YTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPTYLWCVPMFH------CNGWCLTW 243
YTSG+T PKGV+ HRG L +L A L GL V F W +
Sbjct: 100 YTSGSTGRPKGVMVEHRG--LVNLLAWLQERYGLTAG--DRVLQFASFSFDASV-WEIFP 154
Query: 244 AVAAQGGTNVC---QRTVNAKEIFDNITRHKVTHFGGAPTVLNMIANAP 289
+ + G T V + + + + + + H++T P++L + +A
Sbjct: 155 PLLS-GATLVLAPPEVLRDPEALAELLREHRITVLHLVPSLLRALLDAL 202
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester bond to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 445 |
| >gnl|CDD|213288 cd05921, FCS, Feruloyl-CoA synthetase (FCS) | Back alignment and domain information |
|---|
Score = 44.1 bits (105), Expect = 5e-05
Identities = 36/172 (20%), Positives = 61/172 (35%), Gaps = 17/172 (9%)
Query: 41 TWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAGAVLCTLNTR--- 97
T+ E ++ +A L LG+S + L+ N L AG + ++
Sbjct: 27 TYAEALRQVRAIAQALLDLGLSAERPLMILSGNSIEHALLALAAMYAGVPVAPVSPAYSL 86
Query: 98 --HDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGEPVSTV 155
D A + + +F + GA + + L + +V G P
Sbjct: 87 LSKDFAKLRHIFDLLTPGAVFAE-------DGAAFARALAALGLAGVPVVAVRGAPGGPA 139
Query: 156 ASSSGNLEYESLLAIGKLREVRRPKDECDPIA-LNYTSGTTSSPKGVICSHR 206
+ + L A+ P D +A +TSG+T PK VI +HR
Sbjct: 140 IAFAALLATPPTAAVDAAFAAVGP----DTVAKYLFTSGSTGLPKAVINTHR 187
|
Feruloyl-CoA synthetase is an essential enzyme in the feruloyl acid degradation pathway and enables some proteobacteria to grow on media containing feruloyl acid as the sole carbon source. It catalyzes the transfer of CoA to the carboxyl group of ferulic acid, which then forms feruloyl-CoA in the presence of ATP and Mg2. The resulting feruloyl-CoA is further degraded to vanillin and acetyl-CoA. Feruloyl-CoA synthetase (FCS) is a subfamily of the adenylate-forming enzymes superfamily. Length = 559 |
| >gnl|CDD|236803 PRK10946, entE, enterobactin synthase subunit E; Provisional | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 5e-05
Identities = 26/79 (32%), Positives = 36/79 (45%), Gaps = 4/79 (5%)
Query: 12 VPLTPISFLERSAVVYRDRPSVVYGDVQYTWKETHQRCVKLASGLAHLGISPGDVVAALA 71
+PLT I L R A D +V+ G+ Q++++E +Q LA L GI PGD
Sbjct: 25 LPLTDI--LTRHAA--SDAIAVICGERQFSYRELNQASDNLACSLRRQGIKPGDTALVQL 80
Query: 72 PNVPAMYELHFGVPMAGAV 90
NV Y F + G
Sbjct: 81 GNVAEFYITFFALLKLGVA 99
|
Length = 536 |
| >gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 44.2 bits (104), Expect = 7e-05
Identities = 62/286 (21%), Positives = 99/286 (34%), Gaps = 54/286 (18%)
Query: 29 DRPSVVYGDVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAG 88
D +VV+ + + T+ E ++R +LA L G+ P +V M V AG
Sbjct: 4566 DAVAVVFDEEKLTYAELNRRANRLAHALIARGVGPEVLVGIAMERSAEMMVGLLAVLKAG 4625
Query: 89 AVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQL---LPIAQGAFEI-LSKT------SAK 138
L+ + ++ ++ S A ++ L LPI G + L + A
Sbjct: 4626 GAYVPLDPEYPRERLAYMMEDSGAALLLTQSHLLQRLPIPDGLASLALDRDEDWEGFPAH 4685
Query: 139 LPLLVLVPECGEPVSTVASSSGNLEYESLLAIGKLREVRRPKDECDPIALNYTSGTTSSP 198
P + L P+ NL Y + YTSG+T P
Sbjct: 4686 DPAVRLHPD-------------NLAY-----------------------VIYTSGSTGRP 4709
Query: 199 KGVICSHRGAYLNSLAAAL-FNEMGLMPTYLWCVPM-FHCNGWCLTWAVAAQGGTNVCQR 256
KGV SH G+ +N L A E+ L + F + L + G +V R
Sbjct: 4710 KGVAVSH-GSLVNHLHATGERYELTPDDRVLQFMSFSFDGSHEGLYHPLIN--GASVVIR 4766
Query: 257 TVNA---KEIFDNITRHKVTHFGGAPTVLNMIANAPPVFENRFRGR 299
+ + ++ I H+VT P L +A R
Sbjct: 4767 DDSLWDPERLYAEIHEHRVTVLVFPPVYLQQLAEHAERDGEPPSLR 4812
|
Length = 5163 |
| >gnl|CDD|213278 cd05910, FACL_like_1, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 9e-05
Identities = 17/50 (34%), Positives = 25/50 (50%)
Query: 41 TWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAGAV 90
T++E +R ++A GL GI GD V + P + L F + GAV
Sbjct: 4 TFRELDERSDRIARGLRASGIRKGDRVVLMVPPGADLTALTFALFKVGAV 53
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 455 |
| >gnl|CDD|181546 PRK08751, PRK08751, putative long-chain fatty acyl CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 9e-05
Identities = 74/307 (24%), Positives = 115/307 (37%), Gaps = 49/307 (15%)
Query: 18 SFLERSAVVYRDRPSVVYGDVQYTWKETHQRCVKLASGL-AHLGISPGDVVAALAPNVPA 76
S + DRP+ T++E Q + A+ L L + GD VA + PN
Sbjct: 29 EVFATSVAKFADRPAYHSFGKTITYREADQLVEQFAAYLLGELQLKKGDRVALMMPNCLQ 88
Query: 77 MYELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVD-------YQLL---PIAQ 126
FGV AG + +N + + L S A ++ V Q++ P+ Q
Sbjct: 89 YPIATFGVLRAGLTVVNVNPLYTPRELKHQLIDSGASVLVVIDNFGTTVQQVIADTPVKQ 148
Query: 127 ----GAFEILSKTSAKLPLLV------LVPECGEPVSTVASSSGNLEYESLLAIGKLREV 176
G ++L A L V LVPE +G + + LA+G+ +
Sbjct: 149 VITTGLGDMLGFPKAALVNFVVKYVKKLVPE--------YRINGAIRFREALALGRKHSM 200
Query: 177 RRPKDECDPIA-LNYTSGTTSSPKGVICSHRGAYLNSLAAA--LFNEMGLMP---TYLWC 230
+ E D IA L YT GTT KG + +HR N A L L +
Sbjct: 201 PTLQIEPDDIAFLQYTGGTTGVAKGAMLTHRNLVANMQQAHQWLAGTGKLEEGCEVVITA 260
Query: 231 VPMFHCNGWCLTWAVAAQ-------GGTN-VCQRTVNAKEIFDNITRHKVTHFGGAPTVL 282
+P++H +A+ A GG N + + + + + T F G T+
Sbjct: 261 LPLYH------IFALTANGLVFMKIGGCNHLISNPRDMPGFVKELKKTRFTAFTGVNTLF 314
Query: 283 NMIANAP 289
N + N P
Sbjct: 315 NGLLNTP 321
|
Length = 560 |
| >gnl|CDD|213296 cd05930, A_NRPS, The adenylation domain of nonribosomal peptide synthetases (NRPS) | Back alignment and domain information |
|---|
Score = 42.8 bits (102), Expect = 1e-04
Identities = 29/90 (32%), Positives = 46/90 (51%)
Query: 29 DRPSVVYGDVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAG 88
D +VV+GD T++E ++R +LA L G+ PGD+VA P M V AG
Sbjct: 2 DAVAVVFGDQSLTYRELNERANRLAHYLRARGVGPGDLVAICLERSPEMVVAILAVLKAG 61
Query: 89 AVLCTLNTRHDSAMVSVLLRHSEAKIIFVD 118
A L+ + + ++ +L S AK++ D
Sbjct: 62 AAYVPLDPAYPAERLAYMLEDSGAKLLLTD 91
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester bond to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 445 |
| >gnl|CDD|180393 PRK06087, PRK06087, short chain acyl-CoA synthetase; Reviewed | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 1e-04
Identities = 66/294 (22%), Positives = 106/294 (36%), Gaps = 44/294 (14%)
Query: 22 RSAVVYRDRPSVVYGDVQ---YTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMY 78
++A D+ +VV D YT+ +LA+ L GI PGD VA P
Sbjct: 31 QTARAMPDKIAVV--DNHGASYTYSALDHAASRLANWLLAKGIEPGDRVAFQLPGWCEFT 88
Query: 79 ELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIF-------VDYQLLPIAQGAFEI 131
++ GAV L A + +L +AK+ F L +
Sbjct: 89 IIYLACLKVGAVSVPLLPSWREAELVWVLNKCQAKMFFAPTLFKQTRPVDLILP------ 142
Query: 132 LSKTSAKLPLLVLVPECGEPVSTVASSSGNLEYESLLAIGKLREVRRPKDECDPIALNYT 191
L +L +V V + S+++ S +YE L + A+ +T
Sbjct: 143 LQNQLPQLQQIVGVDKLAPATSSLSLSQIIADYEPL-------TTAITTHGDELAAVLFT 195
Query: 192 SGTTSSPKGVICSHRG------AYLNSLAAALFNEMGLMPTYLWCVPMFHCNGWC--LTW 243
SGT PKGV+ +H AY L + ++ +MP P+ H G+ +T
Sbjct: 196 SGTEGLPKGVMLTHNNILASERAYCARLNLT-WQDVFMMPA-----PLGHATGFLHGVT- 248
Query: 244 AVAAQGGTNVCQRTVNAKEIFDNITRHKVTHFGGA-PTV---LNMIANAPPVFE 293
A G +V + + + T GA P + LN++ P
Sbjct: 249 APFLIGARSVLLDIFTPDACLALLEQQRCTCMLGATPFIYDLLNLLEKQPADLS 302
|
Length = 547 |
| >gnl|CDD|240316 PTZ00216, PTZ00216, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 2e-04
Identities = 52/220 (23%), Positives = 83/220 (37%), Gaps = 31/220 (14%)
Query: 34 VYGDVQY-TWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYE--------LHFGV 84
+ + +Y T+ E +R V GLA LG++ G VA +YE +G+
Sbjct: 115 HFNETRYITYAELWERIVNFGRGLAELGLTKGSNVA--------IYEETRWEWLASIYGI 166
Query: 85 PMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVL 144
V T+ ++ LR +E K I + + +P + S +P +
Sbjct: 167 WSQSMVAATVYANLGEDALAYALRETECKAIVCNGKNVPNLLRLMK-----SGGMPNTTI 221
Query: 145 VPECGEPVSTVASSSGNLEYESLLAIGKLREVRRP---KDECDPIAL-NYTSGTTSSPKG 200
+ P S + + ++A G P + D +AL YTSGTT PKG
Sbjct: 222 IYLDSLPASVDTEGCRLVAWTDVVAKGHSAGSHHPLNIPENNDDLALIMYTSGTTGDPKG 281
Query: 201 VICSHRGAYLNSLAAA-----LFNEMGLMPTYLWCVPMFH 235
V+ +H LA L TY +P+ H
Sbjct: 282 VMHTHGSLTAGILALEDRLNDLIGPPEEDETYCSYLPLAH 321
|
Length = 700 |
| >gnl|CDD|213319 cd05972, MACS_like, Medium-chain acyl-CoA synthetase (MACS or ACSM) | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 3e-04
Identities = 22/79 (27%), Positives = 35/79 (44%)
Query: 40 YTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAGAVLCTLNTRHD 99
+T+ E + + A+ L LG+ GD VA L P VP ++ + G GAV T+
Sbjct: 1 WTFAELKEESDRAANFLKDLGVGRGDRVAVLLPRVPELWAVILGCIKLGAVFIPGTTQLG 60
Query: 100 SAMVSVLLRHSEAKIIFVD 118
+ L + A+ I
Sbjct: 61 PKDIRYRLERAGARAIVTS 79
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. Length = 430 |
| >gnl|CDD|213274 cd05906, A_NRPS_TubE_like, The adenylation domain (A domain) of a family of nonribosomal peptide synthetases (NRPSs) synthesizing toxins and antitumor agents | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 3e-04
Identities = 47/205 (22%), Positives = 77/205 (37%), Gaps = 32/205 (15%)
Query: 13 PLTPISFLERSAVVYRDR-PSVVYGDVQY---TWKETHQRCVKLASGLAHLGISPGD-VV 67
P T L+R+A R + + D ++ E + ++ +GL LG+ PGD V+
Sbjct: 9 PRTLEEALQRAAEHAPGRGITYIDADGSEEFQSYAELLEEAERILAGLRALGLKPGDSVI 68
Query: 68 AALAPN---VPAMYELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLL-- 122
L N V A + + G V + + AK+ + +LL
Sbjct: 69 LQLERNEDFVTAFW----ACVLGGFVPVPVAV----PPTYDEPNAAVAKLRNIW-ELLGS 119
Query: 123 PIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVASSSGNLEYESLLAIGKLREVRRPKDE 182
P+ IL+ + L L G V + E L + + + +
Sbjct: 120 PV------ILTDAALVAALAGLRTRAGLEALRVLAI------EELRSAPPDAPLHPARPD 167
Query: 183 CDPIALNYTSGTTSSPKGVICSHRG 207
DP L TSG+T PK V+ +HR
Sbjct: 168 -DPALLLLTSGSTGVPKCVVLTHRN 191
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPSs that synthesize toxins and antitumor agents; for example, TubE for Tubulysine, CrpA for cryptophycin, TdiA for terrequinone A, KtzG for kutzneride, and Vlm1/Vlm2 for Valinomycin. Nonribosomal peptide synthetases are large multifunctional enzymes which synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 560 |
| >gnl|CDD|213305 cd05939, hsFATP4_like, Fatty acid transport proteins (FATP), including FATP4 and FATP1, and similar proteins | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 3e-04
Identities = 52/248 (20%), Positives = 89/248 (35%), Gaps = 64/248 (25%)
Query: 37 DVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAGAVLCTLNT 96
D +T++E ++ K+A+ G GDVVA N L G+ G +N+
Sbjct: 1 DRHWTFRELNEYSNKVANFFQAQGYRSGDVVALFMENRLEFVALWLGLAKIGVETALINS 60
Query: 97 --RHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGEPVST 154
R +S + + + ++A +IF L L+++S + P
Sbjct: 61 NLRLESLLHCITVSKAKA-LIFNLLDPL---------LTQSSTEPPSQD----------- 99
Query: 155 VASSSGNLEYESLLAIGKLREVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLA 214
+ D + YTSGTT PK + H Y +A
Sbjct: 100 ------------------------DVNFRDKLFYIYTSGTTGLPKAAVIVHSRYY--RIA 133
Query: 215 AALFNEMGLMPT---YLWCVPMFH------CNGWCLTWAVAAQGGTNVCQRTVNAKEIFD 265
A + G+ P Y C+P++H G L G T V ++ +A +D
Sbjct: 134 AGAYYAFGMRPEDVVYD-CLPLYHSAGGIMGVGQAL-----LHGSTVVIRKKFSASNFWD 187
Query: 266 NITRHKVT 273
+ ++ T
Sbjct: 188 DCVKYNCT 195
|
Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. At least five copies of FATPs are identified in mammalian cells. This family includes FATP4, FATP1, and homologous proteins. Each FATP has unique patterns of tissue distribution. FATP4 is mainly expressed in the brain, testis, colon and kidney. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 474 |
| >gnl|CDD|166255 PLN02614, PLN02614, long-chain acyl-CoA synthetase | Back alignment and domain information |
|---|
Score = 41.2 bits (96), Expect = 5e-04
Identities = 57/266 (21%), Positives = 103/266 (38%), Gaps = 32/266 (12%)
Query: 38 VQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAGAVLCT-LNT 96
V T++E + +KL + L +G+ N P + + A + C L
Sbjct: 78 VWQTYQEVYDIVIKLGNSLRSVGVKDEAKCGIYGANSPE-WIISMEACNAHGLYCVPLYD 136
Query: 97 RHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLV----LVPECGEPV 152
+ V ++ HSE I+FV+ + + F+ ++ + +V + E E
Sbjct: 137 TLGAGAVEFIISHSEVSIVFVEEKKIS---ELFKTCPNSTEYMKTVVSFGGVSREQKEEA 193
Query: 153 STVASSSGNLEYESLLAIGKLRE----VRRPKDECDPIALNYTSGTTSSPKGVICSHRGA 208
T ++ L +G+ ++ +++ D C + YTSGTT PKGV+ S+
Sbjct: 194 ETFGLVI--YAWDEFLKLGEGKQYDLPIKKKSDIC---TIMYTSGTTGDPKGVMISNESI 248
Query: 209 ---------YLNSLAAALFNEMGLMPTYLWCVPMFHCNGWCLTWAVAAQGGTNVCQRTVN 259
L S AAL + YL +P+ H + G R +
Sbjct: 249 VTLIAGVIRLLKSANAAL----TVKDVYLSYLPLAHIFDRVIEECFIQHGAAIGFWRG-D 303
Query: 260 AKEIFDNITRHKVTHFGGAPTVLNMI 285
K + +++ K T F P VL+ +
Sbjct: 304 VKLLIEDLGELKPTIFCAVPRVLDRV 329
|
Length = 666 |
| >gnl|CDD|235865 PRK06814, PRK06814, acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 8e-04
Identities = 24/82 (29%), Positives = 33/82 (40%), Gaps = 20/82 (24%)
Query: 167 LLAIGKLREVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAA---------- 216
LLA +D DP + +TSG+ +PKGV+ SHR N A
Sbjct: 777 LLAGRFPLVYFCNRDPDDPAVILFTSGSEGTPKGVVLSHRNLLANRAQVAARIDFSPEDK 836
Query: 217 LFNEMGLMPTYLWCVPMFHCNG 238
+FN +P+FH G
Sbjct: 837 VFN----------ALPVFHSFG 848
|
Length = 1140 |
| >gnl|CDD|213310 cd05945, DltA, D-alanine:D-alanyl carrier protein ligase (DltA) | Back alignment and domain information |
|---|
Score = 39.9 bits (94), Expect = 0.001
Identities = 22/126 (17%), Positives = 43/126 (34%), Gaps = 31/126 (24%)
Query: 181 DECDPIALNYTSGTTSSPKGVICSHRG--AYLNSLAAALFNE-----MGLMPTY------ 227
D D + +TSG+T PKGV SH ++L+ + P
Sbjct: 95 DPDDLAYILFTSGSTGKPKGVQISHANLASFLDWMVEDFDLTEGDVFSNQAPFSFDLSVF 154
Query: 228 -LWCVPMFHCNGWCLTWAVAAQGGTNVC---QRTVNAKEIFDNITRHKVTHFGGAPTVLN 283
L+ A G T ++ + +F+ + H +T + P+ +
Sbjct: 155 DLFP-----------ALAS---GATLYVIPKEQIADPLALFEFLKEHGLTVWVSVPSFAS 200
Query: 284 MIANAP 289
++ +
Sbjct: 201 LLLLSR 206
|
DltA belongs to the class I AMP-forming adenylation domain superfamily, which also includes acetyl-CoA synthetase, luciferase, and the adenylation domains of non-ribosomal synthetases. It catalyzes the two-step activation reaction of D-alanine: the formation of a substrate-AMP molecule as an intermediate, and then the transfer of the amino acid adenylate to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram-positive bacteria. Length = 447 |
| >gnl|CDD|180533 PRK06334, PRK06334, long chain fatty acid--[acyl-carrier-protein] ligase; Validated | Back alignment and domain information |
|---|
Score = 40.2 bits (94), Expect = 0.001
Identities = 32/114 (28%), Positives = 46/114 (40%), Gaps = 8/114 (7%)
Query: 180 KDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALF---NEMGLMPTYLWCVPMFHC 236
KD D + +TSGT PKGV +H N A F E +M ++L P FH
Sbjct: 180 KDPEDVAVILFTSGTEKLPKGVPLTHANLLANQRACLKFFSPKEDDVMMSFL---PPFHA 236
Query: 237 NGW--CLTWAVAAQGGTNVCQRTVNAKEIFDNITRHKVTHFGGAPTVLNMIANA 288
G+ C + + + + K+I + I KVT G P + I
Sbjct: 237 YGFNSCTLFPLLSGVPVVFAYNPLYPKKIVEMIDEAKVTFLGSTPVFFDYILKT 290
|
Length = 539 |
| >gnl|CDD|233770 TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase | Back alignment and domain information |
|---|
Score = 39.9 bits (94), Expect = 0.001
Identities = 33/128 (25%), Positives = 49/128 (38%), Gaps = 22/128 (17%)
Query: 175 EVRRPKDEC--------DPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPT 226
+ + C DP+ + YTSG+T PKGV+ + G YL A + +
Sbjct: 220 LMAKASAYCEPEPMDSEDPLFILYTSGSTGKPKGVLHT-TGGYLLYAAMTMKYVFDIKDG 278
Query: 227 -YLWCVPMFHCNGWC-----LTWAVAAQGGTNVCQRTV----NAKEIFDNITRHKVTHFG 276
WC GW + + A G T V + ++ I +HKVT F
Sbjct: 279 DIFWCTADV---GWITGHSYIVYGPLANGATTVMFEGTPTYPDPGRFWEIIEKHKVTIFY 335
Query: 277 GAPTVLNM 284
APT +
Sbjct: 336 TAPTAIRA 343
|
This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by pfam00501. Length = 625 |
| >gnl|CDD|213313 cd05966, ACS, Acetyl-CoA synthetase (also known as acetate-CoA ligase and acetyl-activating enzyme) | Back alignment and domain information |
|---|
Score = 39.8 bits (94), Expect = 0.001
Identities = 67/293 (22%), Positives = 106/293 (36%), Gaps = 87/293 (29%)
Query: 40 YTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMA-------GAVLC 92
T++E ++ + A+ L LG+ GD VA P +P + P+A GA+
Sbjct: 79 ITYRELYREVCRFANVLKSLGVKKGDRVAIYMPMIPEL-------PIAMLACARIGAI-- 129
Query: 93 TLNTRHDSAMVSVL--------LR----HSEAK-IIFVD--------YQLLPIAQGAFEI 131
H SV+ L +++K +I D L I A E
Sbjct: 130 -----H-----SVVFAGFSAEALADRINDAKSKLLITADGGYRGGKVIPLKEIVDEALEK 179
Query: 132 LSKTSAKLPLLVLVPEC-GEPVSTVASSSGNLEYESLLAIGKLREVRRPKDECDPIALN- 189
V+V + G V V ++ + L+A + C+P ++
Sbjct: 180 CPSVEK-----VIVVKRTGGEVPMV--EGRDVWWHDLMA--------KASPYCEPEPMDA 224
Query: 190 -------YTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMP--TYLWCVPMFHCNGWC 240
YTSG+T PKGV+ + G YL A + P Y WC GW
Sbjct: 225 EDPLFILYTSGSTGKPKGVVHTT-GGYLVYAATTFKYVFDIHPDDVY-WCTADI---GWI 279
Query: 241 -----LTWAVAAQGGTNVCQRTV----NAKEIFDNITRHKVTHFGGAPTVLNM 284
+ + A G T V + ++ + ++KVT F APT + M
Sbjct: 280 TGHSYIVYGPLANGATTVMYEGAPDYPDPGRWWEIVEKYKVTIFYTAPTAIRM 332
|
Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is widely present in all living organisms. The activity of this enzyme is crucial for maintaining the required levels of acetyl-CoA, a key intermediate in many important biosynthetic and catabolic processes. Acetyl-CoA is used in the biosynthesis of glucose, fatty acids, and cholesterol. It can also be used in the production of energy in the citric acid cycle. Eukaryotes typically have two isoforms of acetyl-CoA synthetase, a cytosolic form involved in biosynthetic processes and a mitochondrial form primarily involved in energy generation. Length = 602 |
| >gnl|CDD|213286 cd05919, BCL_like, Benzoate CoA ligase (BCL) and similar adenylate forming enzymes | Back alignment and domain information |
|---|
Score = 38.9 bits (91), Expect = 0.002
Identities = 30/119 (25%), Positives = 44/119 (36%), Gaps = 7/119 (5%)
Query: 184 DPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNE-MGLMP--TYLWCVPMFHCNGW- 239
D YTSGTT PKGV+ HR A A E +GL P +F G
Sbjct: 92 DIAYWLYTSGTTGKPKGVMHRHRDPLT--FAEAFARELLGLQPGDRIFSSSKLFFAYGLG 149
Query: 240 -CLTWAVAAQGGTNVCQRTVNAKEIFDNITRHKVTHFGGAPTVLNMIANAPPVFENRFR 297
L + + + + + + D + RH+ T G P + + + FR
Sbjct: 150 NSLLFPLFSGASAVLLPGWPTPEAVLDLLARHRPTVLFGVPALYRALLESGAGSAPLFR 208
|
This family contains benzoate CoA ligase (BCL) and related ligases that catalyze the acylation of benzoate derivatives, 2-aminobenzoate and 4-hydroxybenzoate. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Xenobiotic aromatic compounds are also a major class of man-made pollutants. Some bacteria use benzoate as the sole source of carbon and energy through benzoate degradation. Benzoate degradation starts with its activation to benzoyl-CoA by benzoate CoA ligase. The reaction catalyzed by benzoate CoA ligase proceeds via a two-step process; the first ATP-dependent step forms an acyl-AMP intermediate, and the second step forms the acyl-CoA ester with release of the AMP. Length = 436 |
| >gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 39.6 bits (92), Expect = 0.002
Identities = 40/183 (21%), Positives = 66/183 (36%), Gaps = 39/183 (21%)
Query: 31 PSVVYGDVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAGAV 90
P++ +G+ + E ++R +LA L G+ P +V M + AG
Sbjct: 528 PALAFGEETLDYAELNRRANRLAHALIERGVGPDVLVGVAMERSIEMVVALLAILKAGGA 587
Query: 91 LCTLNTRHDSAMVSVLLRHSEAKIIFVDYQL---LPIAQGAFEI-LSKTSAKLPLLVLVP 146
L+ + + ++ +L S +++ L LP+A G + L + +A L
Sbjct: 588 YVPLDPEYPAERLAYMLEDSGVQLLLSQSHLGRKLPLAAGVQVLDLDRPAAWLE------ 641
Query: 147 ECGEPVSTVASSSGNLEYESLLAIGKLREVRRPKDECDPIALNY---TSGTTSSPKGVIC 203
S N P E +P L Y TSG+T PKG
Sbjct: 642 ---------GYSEEN-----------------PGTELNPENLAYVIYTSGSTGKPKGAGN 675
Query: 204 SHR 206
HR
Sbjct: 676 RHR 678
|
Length = 5163 |
| >gnl|CDD|213278 cd05910, FACL_like_1, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 39.3 bits (92), Expect = 0.002
Identities = 25/109 (22%), Positives = 42/109 (38%), Gaps = 12/109 (11%)
Query: 184 DPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMG------LMPTYLWCVPMFHCN 237
DP A+ +TSG+T PKGV+ +HR + AL + G + + P F
Sbjct: 86 DPAAILFTSGSTGPPKGVVYTHR--TFAAQIDALRSLYGIREGDRDLAAF----PPFALF 139
Query: 238 GWCLTWAVAAQGGTNVCQRTVNAKEIFDNITRHKVTHFGGAPTVLNMIA 286
G L ++ ++ I + G+P +L +A
Sbjct: 140 GPALGVTTVIPAMDPTAPAALDPAKLAQAIREIGASCVFGSPALLKNVA 188
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 455 |
| >gnl|CDD|168170 PRK05677, PRK05677, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 39.4 bits (92), Expect = 0.002
Identities = 58/244 (23%), Positives = 97/244 (39%), Gaps = 30/244 (12%)
Query: 20 LERSAVVYRDRPSVVYGDVQYTWKETHQRCVKLASGLA-HLGISPGDVVAALAPNVPAMY 78
L++S + D+P+ T+ E ++ A+ L H + PGD +A PNV
Sbjct: 30 LKQSCQRFADKPAFSNLGKTLTYGELYKLSGAFAAWLQQHTDLKPGDRIAVQLPNVLQYP 89
Query: 79 ELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAK 138
FG AG ++ N + + + S AK + L +A A ++L KT K
Sbjct: 90 VAVFGAMRAGLIVVNTNPLYTAREMEHQFNDSGAKALVC---LANMAHLAEKVLPKTGVK 146
Query: 139 LPLLVLVPECGEPVSTVASSS---------------GNLEYESLLAIGKLREVRRPKDEC 183
++ V + P+ + ++ +++ LA G + V +
Sbjct: 147 HVIVTEVADMLPPLKRLLINAVVKHVKKMVPAYHLPQAVKFNDALAKGAGQPVTEANPQA 206
Query: 184 DPIA-LNYTSGTTSSPKGVICSHRGAYLN-----SLAAALFNE-----MGLMPTYLWCVP 232
D +A L YT GTT KG + +HR N +L + NE + +P Y
Sbjct: 207 DDVAVLQYTGGTTGVAKGAMLTHRNLVANMLQCRALMGSNLNEGCEILIAPLPLYHIYAF 266
Query: 233 MFHC 236
FHC
Sbjct: 267 TFHC 270
|
Length = 562 |
| >gnl|CDD|213291 cd05924, FACL_like_5, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 39.2 bits (92), Expect = 0.002
Identities = 24/106 (22%), Positives = 36/106 (33%), Gaps = 16/106 (15%)
Query: 184 DPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNE-------------MGLMPTYLWC 230
D + + YT GTT PKGV+ + L F G T
Sbjct: 4 DDLYMLYTGGTTGMPKGVMWRQEDIFRVLLGGPDFATGEPTLEELAKQVAAGGAGTRFLP 63
Query: 231 V-PMFHCNGWCLTWAVAAQGGTNVCQRT--VNAKEIFDNITRHKVT 273
P+ H G L + GGT V + ++ + +H+V
Sbjct: 64 ACPLMHGAGQWLALSALFAGGTVVLLPDDKFDPDRVWRTVEKHRVN 109
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 365 |
| >gnl|CDD|237144 PRK12582, PRK12582, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 39.3 bits (92), Expect = 0.002
Identities = 51/229 (22%), Positives = 80/229 (34%), Gaps = 35/229 (15%)
Query: 13 PLTPISFLERSAVVYRDRPSVV-----YGD-VQYTWKETHQRCVKLASGLAHLGISPGDV 66
P + L + A DRP + +G + T+ E + LA L LG+ PG
Sbjct: 48 PRSIPHLLAKWAAEAPDRPWLAQREPGHGQWRKVTYGEAKRAVDALAQALLDLGLDPGRP 107
Query: 67 VAALAPN-----VPAMYELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQL 121
V L+ N + + + GVP A HD A + L + +++F Q
Sbjct: 108 VMILSGNSIEHALMTLAAMQAGVPAAPVSPAYSLMSHDHAKLKHLFDLVKPRVVFA--QS 165
Query: 122 LPIAQGAFEILSKTSAKLPLLVLVPECGEPVST----VASSSGNLEYESLLAIGKLREVR 177
A L + + V P G A+ ++ AI
Sbjct: 166 GAPFARALAALDLLDVTV-VHVTGPGEGIASIAFADLAATPPTAAVAAAIAAIT------ 218
Query: 178 RPKDECDPIA-LNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMP 225
D +A +TSG+T PK VI + R + A + + L P
Sbjct: 219 -----PDTVAKYLFTSGSTGMPKAVINTQR-----MMCANIAMQEQLRP 257
|
Length = 624 |
| >gnl|CDD|213318 cd05971, MACS_like_3, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS) | Back alignment and domain information |
|---|
Score = 38.9 bits (91), Expect = 0.003
Identities = 30/131 (22%), Positives = 41/131 (31%), Gaps = 43/131 (32%)
Query: 184 DPIALNYTSGTTSSPKGVICSHR------GAYLNSL------------------AAALFN 219
DP L YTSGTT PKG + HR L +
Sbjct: 89 DPAILIYTSGTTGPPKGALHGHRVLLGHLPGVELYFELAPRPGDVFWTPADWAWIGGLLD 148
Query: 220 EMGLMPTYLWCVPMFHCNGWCLTWAVAAQGGTNVCQRTVNAKEIFDNITRHKVTHFGGAP 279
L+P + VP+ VA + +R F + R+ VT+ P
Sbjct: 149 V--LLPALYFGVPV-----------VAYRMQRFDPERA------FALMRRYGVTNAFLPP 189
Query: 280 TVLNMIANAPP 290
T L M+
Sbjct: 190 TALKMMRRVGS 200
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 439 |
| >gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 39.0 bits (91), Expect = 0.003
Identities = 65/293 (22%), Positives = 108/293 (36%), Gaps = 58/293 (19%)
Query: 20 LERSAVVYRDRPSVVYGDVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYE 79
+E A + ++V+G+ + T+ E ++R +LA L LG+ P +V+ +A V E
Sbjct: 1580 IEDQAAATPEAVALVFGEQELTYGELNRRANRLAHRLIALGVGP-EVLVGIA--VERSLE 1636
Query: 80 LHFG---VPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQL---LPIAQGAFEILS 133
+ G + AG L+ + ++ ++ S +++ L LP+ G
Sbjct: 1637 MVVGLLAILKAGGAYVPLDPEYPRERLAYMIEDSGIELLLTQSHLQARLPLPDG------ 1690
Query: 134 KTSAKLPLLVLVPE----CGEPVST--VASSSGNLEYESLLAIGKLREVRRPKDECDPIA 187
L LVL E G S V + NL Y
Sbjct: 1691 -----LRSLVLDQEDDWLEGYSDSNPAVNLAPQNLAY----------------------- 1722
Query: 188 LNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPTYLWCVPM---FHCNGWCLTWA 244
+ YTSG+T PKG H GA +N L A L + F + W L W
Sbjct: 1723 VIYTSGSTGRPKGAGNRH-GALVNRL-CATQEAYQLSAADVVLQFTSFAFDVSVWELFWP 1780
Query: 245 VAAQGGTNVCQR---TVNAKEIFDNITRHKVTHFGGAPTVLNMIANAPPVFEN 294
+ G V + +++ I R +VT P++L + E+
Sbjct: 1781 L-INGARLVIAPPGAHRDPEQLIQLIERQQVTTLHFVPSMLQQLLQMDEQVEH 1832
|
Length = 3956 |
| >gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 38.6 bits (90), Expect = 0.004
Identities = 49/206 (23%), Positives = 74/206 (35%), Gaps = 48/206 (23%)
Query: 20 LERSAVVYRDRPSVVYGDVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYE 79
+E + P++V+GD Q ++ E ++R +LA L +G+ P +V M
Sbjct: 3101 IEAQVARTPEAPALVFGDQQLSYAELNRRANRLAHRLIAIGVGPDVLVGVAVERSVEMIV 3160
Query: 80 LHFGVPMAGAVLCTLNTRH----------DSAMVSVLLRHSEAKIIFVDYQLLPIAQGAF 129
V AG L+ + DS + +LL ++A ++ + LP G
Sbjct: 3161 ALLAVLKAGGAYVPLDPEYPRERLAYMIEDSGV-KLLL--TQAHLL----EQLPAPAGDT 3213
Query: 130 EILSKTSAKLPLLVLVPECGEPVSTVASSSGNLEYESLLAIGKLREVRRPKDECDPIALN 189
+ L L L ST NL Y +
Sbjct: 3214 ALT------LDRLDLNGYSENNPSTRVMGE-NLAY-----------------------VI 3243
Query: 190 YTSGTTSSPKGVICSHRGAYLNSLAA 215
YTSG+T PKGV H GA N L
Sbjct: 3244 YTSGSTGKPKGVGVRH-GALANHLCW 3268
|
Length = 3956 |
| >gnl|CDD|236071 PRK07638, PRK07638, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 38.2 bits (89), Expect = 0.004
Identities = 46/271 (16%), Positives = 96/271 (35%), Gaps = 37/271 (13%)
Query: 29 DRPSVVYGDVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAG 88
++ ++ D T+K+ + K+A+ L +A L N +L G MAG
Sbjct: 16 NKIAIKENDRVLTYKDWFESVCKVANWLNEKESKN-KTIAILLENRIEFLQLFAGAAMAG 74
Query: 89 AVLCTLNTRHDSAMVSVLLRHSEAKIIFVD-YQLLPIAQGAFEILSKTSAKLPLLVLVPE 147
L+ + + L S A +I + Y+L + + ++ + E
Sbjct: 75 WTCVPLDIKWKQDELKERLAISNADMIVTERYKLNDL----------PDEEGR-VIEIDE 123
Query: 148 CGEPVSTVASSSGNLEYESLLAIGKLREVRRPKDECDPIALNYTSGTTSSPKGVICSHRG 207
+ +Y A + + P + +TSG+T PK + + +
Sbjct: 124 WKRMIE---------KYLPTYAPIE-------NVQNAPFYMGFTSGSTGKPKAFLRAQQ- 166
Query: 208 AYLNSLAAALFNEMGLMPTYLWCVP--MFHCNGWCLTWAVAA--QGGTNVCQRTVNAKEI 263
++L+S + ++ + + + H L A++ G T R ++
Sbjct: 167 SWLHSFDCNV-HDFHMKREDSVLIAGTLVHSL--FLYGAISTLYVGQTVHLMRKFIPNQV 223
Query: 264 FDNITRHKVTHFGGAPTVLNMIANAPPVFEN 294
D + ++ PT+L + V EN
Sbjct: 224 LDKLETENISVMYTVPTMLESLYKENRVIEN 254
|
Length = 487 |
| >gnl|CDD|213324 cd12116, A_NRPS_Ta1_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including salinosporamide A polyketide synthase | Back alignment and domain information |
|---|
Score = 37.9 bits (89), Expect = 0.004
Identities = 21/90 (23%), Positives = 39/90 (43%)
Query: 29 DRPSVVYGDVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAG 88
D ++ D ++ E +R +LA+ L LG+ PGD V L + + AG
Sbjct: 2 DAIALRDDDRTLSYAELDERSNQLAARLRALGVGPGDRVGVLLERSADLVAALLAILKAG 61
Query: 89 AVLCTLNTRHDSAMVSVLLRHSEAKIIFVD 118
A L+ + + + +L +E ++ D
Sbjct: 62 AAYVPLDPSYPAERLQYMLEDAEPALLLTD 91
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the myxovirescin (TA) antibiotic biosynthetic gene in Myxococcus xanthus; TA production plays a role in predation. It also includes the salinosporamide A polyketide synthase which is involved in the biosynthesis of salinosporamide A, a marine microbial metabolite whose chlorine atom is crucial for potent proteasome inhibition and anticancer activity. Length = 438 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 301 | |||
| KOG1177 | 596 | consensus Long chain fatty acid acyl-CoA ligase [L | 100.0 | |
| PTZ00342 | 746 | acyl-CoA synthetase; Provisional | 100.0 | |
| COG0318 | 534 | CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid l | 100.0 | |
| PLN02736 | 651 | long-chain acyl-CoA synthetase | 100.0 | |
| PLN02614 | 666 | long-chain acyl-CoA synthetase | 100.0 | |
| KOG1176 | 537 | consensus Acyl-CoA synthetase [Lipid transport and | 100.0 | |
| PLN02861 | 660 | long-chain-fatty-acid-CoA ligase | 100.0 | |
| PRK07788 | 549 | acyl-CoA synthetase; Validated | 100.0 | |
| PLN02860 | 563 | o-succinylbenzoate-CoA ligase | 100.0 | |
| PLN03102 | 579 | acyl-activating enzyme; Provisional | 100.0 | |
| COG0365 | 528 | Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid l | 100.0 | |
| PRK08279 | 600 | long-chain-acyl-CoA synthetase; Validated | 100.0 | |
| PLN02387 | 696 | long-chain-fatty-acid-CoA ligase family protein | 100.0 | |
| PRK06187 | 521 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| KOG1256 | 691 | consensus Long-chain acyl-CoA synthetases (AMP-for | 100.0 | |
| PRK13295 | 547 | cyclohexanecarboxylate-CoA ligase; Reviewed | 100.0 | |
| PRK07656 | 513 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| COG1022 | 613 | FAA1 Long-chain acyl-CoA synthetases (AMP-forming) | 100.0 | |
| PRK08314 | 546 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| KOG1179 | 649 | consensus Very long-chain acyl-CoA synthetase/fatt | 100.0 | |
| PLN03052 | 728 | acetate--CoA ligase; Provisional | 100.0 | |
| PLN02654 | 666 | acetate-CoA ligase | 100.0 | |
| PLN02430 | 660 | long-chain-fatty-acid-CoA ligase | 100.0 | |
| PRK06155 | 542 | crotonobetaine/carnitine-CoA ligase; Provisional | 100.0 | |
| COG1021 | 542 | EntE Peptide arylation enzymes [Secondary metaboli | 100.0 | |
| PRK13382 | 537 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK07529 | 632 | AMP-binding domain protein; Validated | 100.0 | |
| PRK05605 | 573 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK06164 | 540 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK07786 | 542 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| TIGR02316 | 628 | propion_prpE propionate--CoA ligase. This family c | 100.0 | |
| TIGR03098 | 515 | ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosor | 100.0 | |
| PLN02246 | 537 | 4-coumarate--CoA ligase | 100.0 | |
| TIGR02188 | 625 | Ac_CoA_lig_AcsA acetate--CoA ligase. This model de | 100.0 | |
| PRK08162 | 545 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK08316 | 523 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK06334 | 539 | long chain fatty acid--[acyl-carrier-protein] liga | 100.0 | |
| PRK08180 | 614 | feruloyl-CoA synthase; Reviewed | 100.0 | |
| PRK03640 | 483 | O-succinylbenzoic acid--CoA ligase; Provisional | 100.0 | |
| PF00501 | 417 | AMP-binding: AMP-binding enzyme; InterPro: IPR0008 | 100.0 | |
| PRK00174 | 637 | acetyl-CoA synthetase; Provisional | 100.0 | |
| PTZ00297 | 1452 | pantothenate kinase; Provisional | 100.0 | |
| PTZ00216 | 700 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK06087 | 547 | short chain acyl-CoA synthetase; Reviewed | 100.0 | |
| PRK08008 | 517 | caiC putative crotonobetaine/carnitine-CoA ligase; | 100.0 | |
| PLN02479 | 567 | acetate-CoA ligase | 100.0 | |
| PTZ00237 | 647 | acetyl-CoA synthetase; Provisional | 100.0 | |
| PRK05857 | 540 | acyl-CoA synthetase; Validated | 100.0 | |
| TIGR02275 | 527 | DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase. Prot | 100.0 | |
| PRK06839 | 496 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK07638 | 487 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK05620 | 576 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| TIGR03208 | 538 | cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase. | 100.0 | |
| PRK07470 | 528 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK13388 | 540 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK06178 | 567 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK04319 | 570 | acetyl-CoA synthetase; Provisional | 100.0 | |
| PRK06188 | 524 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK07008 | 539 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK06018 | 542 | putative acyl-CoA synthetase; Provisional | 100.0 | |
| TIGR01217 | 652 | ac_ac_CoA_syn acetoacetyl-CoA synthase. This enzym | 100.0 | |
| PRK08315 | 559 | AMP-binding domain protein; Validated | 100.0 | |
| PRK07514 | 504 | malonyl-CoA synthase; Validated | 100.0 | |
| PRK06145 | 497 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK12583 | 558 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK12582 | 624 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK10946 | 536 | entE enterobactin synthase subunit E; Provisional | 100.0 | |
| PRK10524 | 629 | prpE propionyl-CoA synthetase; Provisional | 100.0 | |
| PRK03584 | 655 | acetoacetyl-CoA synthetase; Provisional | 100.0 | |
| PRK09274 | 552 | peptide synthase; Provisional | 100.0 | |
| PLN02330 | 546 | 4-coumarate--CoA ligase-like 1 | 100.0 | |
| PRK07867 | 529 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK07798 | 533 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK10252 | 1296 | entF enterobactin synthase subunit F; Provisional | 100.0 | |
| PRK05677 | 562 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK12467 | 3956 | peptide synthase; Provisional | 100.0 | |
| PLN02574 | 560 | 4-coumarate--CoA ligase-like | 100.0 | |
| PRK07769 | 631 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| TIGR03205 | 541 | pimA dicarboxylate--CoA ligase PimA. PimA, a membe | 100.0 | |
| PRK08043 | 718 | bifunctional acyl-[acyl carrier protein] synthetas | 100.0 | |
| TIGR02262 | 508 | benz_CoA_lig benzoate-CoA ligase family. Character | 100.0 | |
| PRK07059 | 557 | Long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| TIGR03443 | 1389 | alpha_am_amid L-aminoadipate-semialdehyde dehydrog | 100.0 | |
| PRK05852 | 534 | acyl-CoA synthetase; Validated | 100.0 | |
| TIGR01734 | 502 | D-ala-DACP-lig D-alanine--poly(phosphoribitol) lig | 100.0 | |
| PRK12467 | 3956 | peptide synthase; Provisional | 100.0 | |
| PRK13383 | 516 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK07868 | 994 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK06710 | 563 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK05691 | 4334 | peptide synthase; Validated | 100.0 | |
| PRK12476 | 612 | putative fatty-acid--CoA ligase; Provisional | 100.0 | |
| PRK12316 | 5163 | peptide synthase; Provisional | 100.0 | |
| PRK08751 | 560 | putative long-chain fatty acyl CoA ligase; Provisi | 100.0 | |
| PRK12492 | 562 | long-chain-fatty-acid--CoA ligase; Provisional | 100.0 | |
| PRK12316 | 5163 | peptide synthase; Provisional | 100.0 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 100.0 | |
| PRK06060 | 705 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK04813 | 503 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 100.0 | |
| PRK05691 | 4334 | peptide synthase; Validated | 100.0 | |
| PRK09088 | 488 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK08974 | 560 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK05851 | 525 | long-chain-fatty-acid--[acyl-carrier-protein] liga | 100.0 | |
| KOG1180 | 678 | consensus Acyl-CoA synthetase [Lipid transport and | 100.0 | |
| PRK05850 | 578 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 100.0 | |
| PRK13391 | 511 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK09029 | 458 | O-succinylbenzoic acid--CoA ligase; Provisional | 100.0 | |
| PRK13390 | 501 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK09192 | 579 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK08308 | 414 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK12406 | 509 | long-chain-fatty-acid--CoA ligase; Provisional | 100.0 | |
| PRK07787 | 471 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK08276 | 502 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK07768 | 545 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| TIGR03089 | 227 | conserved hypothetical protein TIGR03089. This pro | 100.0 | |
| TIGR01923 | 436 | menE O-succinylbenzoate-CoA ligase. This model rep | 99.98 | |
| PRK07445 | 452 | O-succinylbenzoic acid--CoA ligase; Reviewed | 99.97 | |
| TIGR01733 | 408 | AA-adenyl-dom amino acid adenylation domain. This | 99.97 | |
| KOG1175 | 626 | consensus Acyl-CoA synthetase [Lipid transport and | 99.97 | |
| PLN03051 | 499 | acyl-activating enzyme; Provisional | 99.96 | |
| COG1020 | 642 | EntF Non-ribosomal peptide synthetase modules and | 99.94 | |
| KOG3628 | 1363 | consensus Predicted AMP-binding protein [General f | 99.89 | |
| TIGR02372 | 386 | 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactiv | 99.66 | |
| PRK07824 | 358 | O-succinylbenzoic acid--CoA ligase; Provisional | 99.58 | |
| KOG1178 | 1032 | consensus Non-ribosomal peptide synthetase/alpha-a | 99.51 | |
| TIGR02155 | 422 | PA_CoA_ligase phenylacetate-CoA ligase. Phenylacet | 99.36 | |
| TIGR03335 | 445 | F390_ftsA coenzyme F390 synthetase. This enzyme, c | 99.12 | |
| KOG3628 | 1363 | consensus Predicted AMP-binding protein [General f | 99.05 | |
| COG1541 | 438 | PaaK Coenzyme F390 synthetase [Coenzyme metabolism | 98.5 | |
| COG1541 | 438 | PaaK Coenzyme F390 synthetase [Coenzyme metabolism | 96.66 | |
| TIGR02304 | 430 | aden_form_hyp probable adenylate-forming enzyme. M | 96.53 | |
| TIGR03335 | 445 | F390_ftsA coenzyme F390 synthetase. This enzyme, c | 93.51 | |
| TIGR02155 | 422 | PA_CoA_ligase phenylacetate-CoA ligase. Phenylacet | 93.17 | |
| PF04443 | 365 | LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR | 92.2 | |
| PF00501 | 417 | AMP-binding: AMP-binding enzyme; InterPro: IPR0008 | 89.93 | |
| TIGR03089 | 227 | conserved hypothetical protein TIGR03089. This pro | 88.78 | |
| TIGR03590 | 279 | PseG pseudaminic acid biosynthesis-associated prot | 88.36 | |
| PRK07656 | 513 | long-chain-fatty-acid--CoA ligase; Validated | 88.0 | |
| KOG1176 | 537 | consensus Acyl-CoA synthetase [Lipid transport and | 86.99 | |
| PRK06187 | 521 | long-chain-fatty-acid--CoA ligase; Validated | 86.76 | |
| PRK06334 | 539 | long chain fatty acid--[acyl-carrier-protein] liga | 86.22 | |
| KOG1177 | 596 | consensus Long chain fatty acid acyl-CoA ligase [L | 85.36 | |
| COG0031 | 300 | CysK Cysteine synthase [Amino acid transport and m | 85.31 | |
| PRK08315 | 559 | AMP-binding domain protein; Validated | 85.24 | |
| PLN03052 | 728 | acetate--CoA ligase; Provisional | 84.21 | |
| PRK12583 | 558 | acyl-CoA synthetase; Provisional | 83.76 | |
| PF03321 | 528 | GH3: GH3 auxin-responsive promoter; InterPro: IPR0 | 83.69 | |
| PTZ00237 | 647 | acetyl-CoA synthetase; Provisional | 83.02 | |
| PLN02736 | 651 | long-chain acyl-CoA synthetase | 82.49 | |
| PLN03102 | 579 | acyl-activating enzyme; Provisional | 82.16 | |
| PRK09274 | 552 | peptide synthase; Provisional | 82.05 | |
| TIGR02188 | 625 | Ac_CoA_lig_AcsA acetate--CoA ligase. This model de | 81.56 | |
| PRK00174 | 637 | acetyl-CoA synthetase; Provisional | 80.7 | |
| PRK13295 | 547 | cyclohexanecarboxylate-CoA ligase; Reviewed | 80.25 |
| >KOG1177 consensus Long chain fatty acid acyl-CoA ligase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-45 Score=309.73 Aligned_cols=288 Identities=22% Similarity=0.264 Sum_probs=250.1
Q ss_pred cccCCCCCCCCHHHHHHHHhhhcCCccEEEE--CCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHH
Q 046637 5 IRCSANYVPLTPISFLERSAVVYRDRPSVVY--GDVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHF 82 (301)
Q Consensus 5 ~~~~~~~~~~~~~~~l~~~~~~~~~~~al~~--~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~l 82 (301)
..+..|....++.+.++..+++.||+.|.++ ++.++||+||.+.++++|.+|..+|+++||+|++.+||+.+|+...+
T Consensus 41 g~~~ipl~~~Tigq~l~~~t~~v~dkea~Vf~~eg~R~Tf~~~~~ev~slAaGll~lGL~kGDrVgvwgpN~~~w~l~~l 120 (596)
T KOG1177|consen 41 GCSQIPLDSETIGQLLETTTERVPDKEAAVFDHEGIRLTFSEFVSEVESLAAGLLSLGLKKGDRVGVWGPNSYEWVLCQL 120 (596)
T ss_pred CCCCCCcccccHHHHHHHHhhccCcceEEEEeeccchhhHHHHHHHHHHHHhhHHhhcCCCCCEEEEecCChHHHHHHHH
Confidence 4456788999999999999999999999887 45679999999999999999999999999999999999999999999
Q ss_pred HhhhccceeeecCCCCCHHHHHHHHHhcCceEEEEcCCch-----hhHHHHHHHhcc---------ccCCCCceEEccCC
Q 046637 83 GVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLL-----PIAQGAFEILSK---------TSAKLPLLVLVPEC 148 (301)
Q Consensus 83 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~~~~~~~~~~~---------~~~~~~~i~~~~~~ 148 (301)
||+++|.+.++++|.+..+++...|+..+++++|+...+. +...++..+... ..+.+++++..+++
T Consensus 121 A~A~AG~v~v~~NP~Yq~~elr~~L~k~~~k~l~~p~~~k~~ny~~~l~~icPEv~~~~~G~lkS~~lp~lthvi~~~ed 200 (596)
T KOG1177|consen 121 ACARAGLVLVNLNPAYQSEELRYVLKKVGCKALFAPPQFKTQNYYETLLEICPEVMRGDPGQLKSELLPELTHVILADED 200 (596)
T ss_pred HHHHhceEEeccCcccccHHHHHHHhhcCeEEEEccchhhhchHHHHHHHhhHHhhcCCCccccccccccceEEEecCCC
Confidence 9999999999999999999999999999999999986544 333443333221 11455666666632
Q ss_pred CCCCcccccCCCCccHHHHHhhcccc------ccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhhCC
Q 046637 149 GEPVSTVASSSGNLEYESLLAIGKLR------EVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMG 222 (301)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~ 222 (301)
. ...|...++|++...... .......+++++.|.|||||||.|||+.+||.|++++.......++++
T Consensus 201 ~-------~~~Ga~~~sev~~~~s~~~~a~l~~~~k~~~pdd~~niQFTSGTTG~PKgatLsH~~~~Nna~~vg~r~g~~ 273 (596)
T KOG1177|consen 201 H-------PLPGAFLLSEVLKAASKEERAKLADMSKWLSPDDAVNIQFTSGTTGAPKGATLSHYNFLNNARAVGARAGYN 273 (596)
T ss_pred C-------cCCCceehHHHHHhcchHHHHHHHhhhhhcCCCCceEEEeccCCCCCCcceeeehhhhhhhHHHHHHHhCcC
Confidence 2 235667888888776665 234567789999999999999999999999999999999999999999
Q ss_pred CCCEEEEeccchhhhhhH-HHHHHHHhCCeEEee-CCCCHHHHHHHHHhcCcceecCChHHHHHHHcCCCCccccccCC
Q 046637 223 LMPTYLWCVPMFHCNGWC-LTWAVAAQGGTNVCQ-RTVNAKEIFDNITRHKVTHFGGAPTVLNMIANAPPVFENRFRGR 299 (301)
Q Consensus 223 ~~~~~l~~~p~~h~~g~~-~~~~~l~~g~~~v~~-~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~~ 299 (301)
++.++.+..|+||++|.. .++.+++.|+++|++ +.|+|.+.+++|+++|||.++.+|+|+..|++.++..+.++++.
T Consensus 274 e~~~i~~~~Pl~H~~G~~~~~ma~l~~gat~Vfp~~~f~~k~alqai~~ekcT~l~gtPtM~~Dlln~~~~~~~~~s~l 352 (596)
T KOG1177|consen 274 EKHRICIPNPLYHCFGCVLGVMAALMHGATIVFPAPSFDPKDALQAISNEKCTTLYGTPTMFVDLLNIPQKQQVDLSSL 352 (596)
T ss_pred cceEEEecCchHHHHHHHHHHHHHHHhCcEEEeeCCCCChHHHHHHHHhhceEEEecChHHHHHHhcchhhccCchhhh
Confidence 999999999999999966 589999999999997 68999999999999999999999999999999999999998764
|
|
| >PTZ00342 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-41 Score=317.26 Aligned_cols=275 Identities=16% Similarity=0.182 Sum_probs=218.7
Q ss_pred CCCCCCCCHHHHHHHHhhhcCCccEEEEC--C---eeeeHHHHHHHHHHHHHHHHhc---CCCCC-----------CEEE
Q 046637 8 SANYVPLTPISFLERSAVVYRDRPSVVYG--D---VQYTWKETHQRCVKLASGLAHL---GISPG-----------DVVA 68 (301)
Q Consensus 8 ~~~~~~~~~~~~l~~~~~~~~~~~al~~~--~---~~~Ty~el~~~~~~la~~L~~~---gv~~g-----------~~V~ 68 (301)
..-+...++.++|.+.++++||++|+++. + +.+||+|+.+++.++|++|.++ |+++| |+|+
T Consensus 55 ~~~~~~~~l~~~l~~~~~~~p~~~Al~~~~~g~~~~~~Ty~el~~~v~~~A~~L~~~~~~Gv~~g~~~~~~~~g~~d~V~ 134 (746)
T PTZ00342 55 SSLYVYKHIMKLLLEKYKLNNNKIAIVEHSCGEPQNYITYGNFFKKVLSFSHSLNTYEGKGIPEKKYNEEQNNGKFKLLG 134 (746)
T ss_pred ccccccchHHHHHHHHHhhcCCceeEeccCCCCCceeeeHHHHHHHHHHHHHHHHHHhhcCCCcCccccccccccccEEE
Confidence 34455889999999999999999999973 2 6899999999999999999974 99998 9999
Q ss_pred EEcCCCHHHHHHHHHhhhccceeeecCCCCCHHHHHHHHHhcCceEEEEcCCchhhHHHHHHHhccccCCCCceEEccCC
Q 046637 69 ALAPNVPAMYELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPEC 148 (301)
Q Consensus 69 i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 148 (301)
|+++|+++|+++++||+++|++++|+++.++.+++.+++++++++++|++.+..+.+.+....++ .++.+++++..
T Consensus 135 i~~~N~~ew~~~~lA~~~~Gav~Vpl~~~~~~~el~~il~~s~~~~lv~~~~~~~~l~~~~~~~~----~l~~ii~~~~~ 210 (746)
T PTZ00342 135 LYGSNSINWLVADLACMLSGVTTLVMHSKFSIDVIVDILNETKLEWLCLDLDLVEGLLERKNELP----HLKKLIILDTL 210 (746)
T ss_pred EEcCCCHHHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHhcCCCCEEEEcHHHHHHHHHhhccCC----CceEEEEECCC
Confidence 99999999999999999999999999999999999999999999999998766666555544444 57788887653
Q ss_pred CCCCc----------------cccc-------------------------------------------CCCCccHHHHHh
Q 046637 149 GEPVS----------------TVAS-------------------------------------------SSGNLEYESLLA 169 (301)
Q Consensus 149 ~~~~~----------------~~~~-------------------------------------------~~~~~~~~~~~~ 169 (301)
..... .... ......|+++.+
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 290 (746)
T PTZ00342 211 IKSKEININKEEKNNGSNVNNNGNKNNKEEQKGNDLSNELEDISLGPLEYDKEKLEKIKDLKEKAKKLGISIILFDDMTK 290 (746)
T ss_pred CcccccccccccccccccccccccccccccccccccccccccccccccccchhhhhhhHHHHHHhhcCCCEEEEHHHHHh
Confidence 21000 0000 000011233322
Q ss_pred hccccccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHh--hCCCCCEEEEeccchhhhhhHHHHHHHH
Q 046637 170 IGKLREVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFN--EMGLMPTYLWCVPMFHCNGWCLTWAVAA 247 (301)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~--~~~~~~~~l~~~p~~h~~g~~~~~~~l~ 247 (301)
............++++++|+|||||||.||||++||+|+++++....... .....+++++.+|++|++++...+.+++
T Consensus 291 ~~~~~~~~~~~~~dd~a~IiYTSGTTG~PKGVmlTH~nl~~~~~~~~~~~~~~~~~~d~~ls~LPL~Hi~~~~~~~~~l~ 370 (746)
T PTZ00342 291 NKTTNYKIQNEDPDFITSIVYTSGTSGKPKGVMLSNKNLYNTVVPLCKHSIFKKYNPKTHLSYLPISHIYERVIAYLSFM 370 (746)
T ss_pred hcccCCCCCCCCccceEEEEEcCCCCCCCCEEEEccHHHHHHHHHHhhcccccCCCCCeEEEeCcHHHHHHHHHHHHHHH
Confidence 21111112235678999999999999999999999999998876654321 1235689999999999999987788899
Q ss_pred hCCeEEeeCCCCHHHHHHHHHhcCcceecCChHHHHHHHc
Q 046637 248 QGGTNVCQRTVNAKEIFDNITRHKVTHFGGAPTVLNMIAN 287 (301)
Q Consensus 248 ~g~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~ 287 (301)
.|+++++.+. ++..+++.|++++||+++++|.++++|++
T Consensus 371 ~G~~i~~~~~-~~~~l~~di~~~~pT~~~~VP~v~~~i~~ 409 (746)
T PTZ00342 371 LGGTINIWSK-DINYFSKDIYNSKGNILAGVPKVFNRIYT 409 (746)
T ss_pred cCCEEEEeCC-CHHHHHHHHHHhCCcEEEchHHHHHHHHH
Confidence 9999998875 89999999999999999999999999975
|
|
| >COG0318 CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-41 Score=305.72 Aligned_cols=279 Identities=30% Similarity=0.401 Sum_probs=231.9
Q ss_pred CCCCCCCCHHHHHHHHhhhcCCccEEEECCee--eeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHhh
Q 046637 8 SANYVPLTPISFLERSAVVYRDRPSVVYGDVQ--YTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVP 85 (301)
Q Consensus 8 ~~~~~~~~~~~~l~~~~~~~~~~~al~~~~~~--~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~ 85 (301)
.......++.+++++.++.+|+++|+++.+.. +||+||.++++++|..|++.|+++||+|+|+++|++++++++|||+
T Consensus 5 ~~~~~~~~~~~~l~~~a~~~~~~~a~~~~~~~~~~Ty~el~~~~~~~A~~L~~~~v~~gdrVail~~N~~e~~~~~~a~~ 84 (534)
T COG0318 5 MRMTAELTLASLLERAARRNPDRPALIFLGRGGRLTYRELDRRANRLAAALQALGVKPGDRVAILLPNSPEFLIAFLAAL 84 (534)
T ss_pred ccccccccHHHHHHHHHHhCCCceEEEEcCCCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHH
Confidence 44566789999999999999999999998877 9999999999999999999999999999999999999999999999
Q ss_pred hccceeeecCCCCCHHHHHHHHHhcCceEEEEcCCchhhHHHHHHHhccccCCCCceEEccCCCCCCcccccCCCCccHH
Q 046637 86 MAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVASSSGNLEYE 165 (301)
Q Consensus 86 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 165 (301)
++|++++|++|.++.+++.++++.+++++++++.+............+ ....+........... ..++
T Consensus 85 ~~Gav~vpln~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~--------~~~~ 152 (534)
T COG0318 85 RAGAVAVPLNPRLTPRELAYILNDAGAKVLITSAEFAALLEAVAEALP----VVLVVLLVGDADDRLP--------ITLE 152 (534)
T ss_pred hcCEEEeecCcccCHHHHHHHHHhcCCeEEEEcccchhHHHHHhccCC----cceEEEeccccccccc--------ccHH
Confidence 999999999999999999999999999999999885555444443221 2222222222211000 2455
Q ss_pred HHHhhcccc-ccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhh--CCCCCEEEEeccchhhhhhHHH
Q 046637 166 SLLAIGKLR-EVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNE--MGLMPTYLWCVPMFHCNGWCLT 242 (301)
Q Consensus 166 ~~~~~~~~~-~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~--~~~~~~~l~~~p~~h~~g~~~~ 242 (301)
+........ .......++++++|+|||||||.||||++||.|+..+.......+. +..+|++++++|+||.+|+...
T Consensus 153 ~~~~~~~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgv~~th~~~~~~~~~~~~~~~~~~~~~d~~l~~lPl~H~~Gl~~~ 232 (534)
T COG0318 153 ALAAEGPGPDADARPVDPDDLAFLLYTSGTTGLPKGVVLTHRNLLANAAGIAAALGGGLTPDDVVLSWLPLFHIFGLIVG 232 (534)
T ss_pred HHhhccCCcccccCCCCCCCEEEEEeCCCCCCCCCEeEEecHhHHHHHHHHHHHhcccCCCCceEEEecChHHHHHHHHH
Confidence 553332222 1112267899999999999999999999999999999888888888 8999999999999999999975
Q ss_pred HHH-HHhCCeEEeeC--CCCHHHHHHHHHhcCcceecCChHHHHHHHcCCCCccccccC
Q 046637 243 WAV-AAQGGTNVCQR--TVNAKEIFDNITRHKVTHFGGAPTVLNMIANAPPVFENRFRG 298 (301)
Q Consensus 243 ~~~-l~~g~~~v~~~--~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~ 298 (301)
+.+ ++.|+++++.+ .|+++.++..+.++++|++.++|+++..|++++...+.++++
T Consensus 233 ~~~~~~~G~~~v~~~~~~f~~~~~~~~i~~~~~t~~~~vPt~~~~ll~~~~~~~~~~~~ 291 (534)
T COG0318 233 LLAPLLGGGTLVLLSPEPFDPEEVLWLIEKYKVTVLSGVPTFLRELLDNPEKDDDDLSS 291 (534)
T ss_pred HHHHHHcCCEEEeCCCCCcCHHHHHHHHHHhcceEEecchHHHHHHHhCCccCcccccc
Confidence 554 88899999987 599999999999999999999999999999998888776543
|
|
| >PLN02736 long-chain acyl-CoA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-41 Score=312.09 Aligned_cols=274 Identities=21% Similarity=0.244 Sum_probs=224.7
Q ss_pred CCCCCCHHHHHHHHhhhcCCccEEEE----CC-----eeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHH
Q 046637 10 NYVPLTPISFLERSAVVYRDRPSVVY----GD-----VQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYEL 80 (301)
Q Consensus 10 ~~~~~~~~~~l~~~~~~~~~~~al~~----~~-----~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~ 80 (301)
+....++.++|++.++++||++|+.+ .+ +.+||+|+.++++++|++|.++|+++||+|+|+++|+++|+++
T Consensus 40 ~~~~~tl~~~l~~~a~~~p~~~al~~~~~~~~~~~~~~~lTy~el~~~v~~lA~~L~~~Gv~~gd~Vai~~~n~~e~~~~ 119 (651)
T PLN02736 40 HPEIGTLHDNFVYAVETFRDYKYLGTRIRVDGTVGEYKWMTYGEAGTARTAIGSGLVQHGIPKGACVGLYFINRPEWLIV 119 (651)
T ss_pred CCCCCCHHHHHHHHHHhCCCCCeEEEEecCCCCCCCcEEEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHH
Confidence 34456899999999999999999953 11 4699999999999999999999999999999999999999999
Q ss_pred HHHhhhccceeeecCCCCCHHHHHHHHHhcCceEEEEcCCchhhHHHHHHHhccccCCCCceEEccCCCCCCcc--cccC
Q 046637 81 HFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGEPVST--VASS 158 (301)
Q Consensus 81 ~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~--~~~~ 158 (301)
++||+++|++++|+++..+.+++.+++++++++++|++.+....+.......+ .++.++.++........ ....
T Consensus 120 ~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~l~~~~~~~~~~~~~~~~~~----~l~~ii~~~~~~~~~~~~~~~~~ 195 (651)
T PLN02736 120 DHACSAYSYVSVPLYDTLGPDAVKFIVNHAEVAAIFCVPQTLNTLLSCLSEIP----SVRLIVVVGGADEPLPSLPSGTG 195 (651)
T ss_pred HHHHHHcCCeEEEeecCCCHHHHHHHHhccCCCEEEECHHHHHHHHHHhhcCC----CceEEEEECCCchhhhhhhccCC
Confidence 99999999999999999999999999999999999998776655554443333 45666665432110000 0001
Q ss_pred CCCccHHHHHhhcccc-ccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhhCCCCCEEEEeccchhhh
Q 046637 159 SGNLEYESLLAIGKLR-EVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPTYLWCVPMFHCN 237 (301)
Q Consensus 159 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~h~~ 237 (301)
.....++++....... .......++++++|+|||||||.||||++||.+++.++......+++.++|++++.+|++|.+
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~IlyTSGTTG~PKGV~lsh~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~~ 275 (651)
T PLN02736 196 VEIVTYSKLLAQGRSSPQPFRPPKPEDVATICYTSGTTGTPKGVVLTHGNLIANVAGSSLSTKFYPSDVHISYLPLAHIY 275 (651)
T ss_pred cEEEEHHHHHHhcccCCCCCCCCCccceEEEEEcCCCCCCCcEEEEecHHHHHHHHHHHhccCCCCCCEEEEeCCHHHHH
Confidence 1234677766544322 112235678999999999999999999999999999888888788889999999999999999
Q ss_pred hhHHHHHHHHhCCeEEeeCCCCHHHHHHHHHhcCcceecCChHHHHHHHcC
Q 046637 238 GWCLTWAVAAQGGTNVCQRTVNAKEIFDNITRHKVTHFGGAPTVLNMIANA 288 (301)
Q Consensus 238 g~~~~~~~l~~g~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~ 288 (301)
|+...+.++..|+++++.+. ++..+++.++++++|+++++|++++.+++.
T Consensus 276 ~~~~~~~~l~~G~~i~~~~~-~~~~~~~~i~~~~~t~~~~vP~~~~~l~~~ 325 (651)
T PLN02736 276 ERVNQIVMLHYGVAVGFYQG-DNLKLMDDLAALRPTIFCSVPRLYNRIYDG 325 (651)
T ss_pred HHHHHHHHHHcCCEEEEeCC-CHHHHHHHHHHhCCcEEecchHHHHHHHHH
Confidence 98888888999999988764 889999999999999999999999988753
|
|
| >PLN02614 long-chain acyl-CoA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-40 Score=309.71 Aligned_cols=271 Identities=19% Similarity=0.223 Sum_probs=213.0
Q ss_pred CCCHHHHHHHHhhhcCCccEEEEC----C-----eeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHH
Q 046637 13 PLTPISFLERSAVVYRDRPSVVYG----D-----VQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFG 83 (301)
Q Consensus 13 ~~~~~~~l~~~~~~~~~~~al~~~----~-----~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA 83 (301)
..++.++|++.++++||++|+.+. + +++||+|+.++++++|.+|.++|+++||+|+|+++|+++|+++++|
T Consensus 44 ~~t~~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~Gv~~Gd~Vai~~~n~~e~~~~~lA 123 (666)
T PLN02614 44 MDSCWDVFRMSVEKYPNNPMLGRREIVDGKPGKYVWQTYQEVYDIVIKLGNSLRSVGVKDEAKCGIYGANSPEWIISMEA 123 (666)
T ss_pred CCcHHHHHHHHHHhCCCCCeEEEecccCCCCCCcEEeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHH
Confidence 348999999999999999999842 1 3589999999999999999999999999999999999999999999
Q ss_pred hhhccceeeecCCCCCHHHHHHHHHhcCceEEEEcCCchhhHHHHHHHhccccCCCCceEEccCCCCCCcccc--cCCCC
Q 046637 84 VPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVA--SSSGN 161 (301)
Q Consensus 84 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~--~~~~~ 161 (301)
|+++|++++|+++.++.+++.+++++++++++|++.+....+ ....+.....++.++.++.......... .....
T Consensus 124 ~~~~Gav~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~---~~~~~~~~~~l~~vi~~~~~~~~~~~~~~~~~~~~ 200 (666)
T PLN02614 124 CNAHGLYCVPLYDTLGAGAVEFIISHSEVSIVFVEEKKISEL---FKTCPNSTEYMKTVVSFGGVSREQKEEAETFGLVI 200 (666)
T ss_pred HHHcCCEEEEecCCCCHHHHHHHHhccCCCEEEECHHHHHHH---HHhcccccccceEEEEeCCCChHHhhhhhhcCcEE
Confidence 999999999999999999999999999999999987543322 2222211112456666543210000000 00112
Q ss_pred ccHHHHHhhcccc-ccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHh-----hCCCCCEEEEeccchh
Q 046637 162 LEYESLLAIGKLR-EVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFN-----EMGLMPTYLWCVPMFH 235 (301)
Q Consensus 162 ~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~-----~~~~~~~~l~~~p~~h 235 (301)
..++++....... .......++++++|+|||||||.||||++||.|++.++......+ .+..+|++++.+|++|
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~d~a~I~yTSGTTG~PKGV~lth~nl~~~~~~~~~~~~~~~~~~~~~d~~l~~lPl~H 280 (666)
T PLN02614 201 YAWDEFLKLGEGKQYDLPIKKKSDICTIMYTSGTTGDPKGVMISNESIVTLIAGVIRLLKSANAALTVKDVYLSYLPLAH 280 (666)
T ss_pred EEHHHHHhhcccCCCCCCCCCCCceEEEEEcCCCCCCCcEEEEecHHHHHHHHHHHhhccccccCCCCCcEEEEeccHHH
Confidence 4567665543221 111234678999999999999999999999999988776654433 4678899999999999
Q ss_pred hhhhHHHHHHHHhCCeEEeeCCCCHHHHHHHHHhcCcceecCChHHHHHHHc
Q 046637 236 CNGWCLTWAVAAQGGTNVCQRTVNAKEIFDNITRHKVTHFGGAPTVLNMIAN 287 (301)
Q Consensus 236 ~~g~~~~~~~l~~g~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~ 287 (301)
++++...+.++..|+++++.+ +++..+++.+++++||+++++|++++.+++
T Consensus 281 ~~~~~~~~~~l~~G~~v~~~~-~~~~~~~~~i~~~~~T~~~~vP~~~~~l~~ 331 (666)
T PLN02614 281 IFDRVIEECFIQHGAAIGFWR-GDVKLLIEDLGELKPTIFCAVPRVLDRVYS 331 (666)
T ss_pred HHHHHHHHHHHHhCCEEEEeC-CCHHHHHHHHHHhCCeEEEecHHHHHHHHH
Confidence 999876666788999988875 589999999999999999999999999875
|
|
| >KOG1176 consensus Acyl-CoA synthetase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-40 Score=295.40 Aligned_cols=290 Identities=39% Similarity=0.572 Sum_probs=236.8
Q ss_pred CcccccCCCCCCCCHHHHHHHHhhhcCCc-cEEEECC---eeeeHHHHHHHHHHHHHHHHhcC--CCCCCEEEEEcCCCH
Q 046637 2 EGMIRCSANYVPLTPISFLERSAVVYRDR-PSVVYGD---VQYTWKETHQRCVKLASGLAHLG--ISPGDVVAALAPNVP 75 (301)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~al~~~~---~~~Ty~el~~~~~~la~~L~~~g--v~~g~~V~i~~~n~~ 75 (301)
+.+..++.+..+.+....+.+.+..++++ +.+++.. +.+||+|+..++.++|..|.++| +++||+|++++||++
T Consensus 4 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~g~~~T~~e~~~~~~r~A~~L~~~~~~i~~gDvV~i~~pNs~ 83 (537)
T KOG1176|consen 4 EKLWKGPANNTPLTPITFLGRPAFVYLDRNTSLVYQDSDGRELTYSELHDRCRRLASALSELGLGIKKGDVVGILAPNTP 83 (537)
T ss_pred cccccCcccCccccccccccccccccccCcceEEEecCCCcEEcHHHHHHHHHHHHHHHHhcCCCCCCCCEEEEEcCCCH
Confidence 44566667777777777777777666666 8888755 89999999999999999999875 889999999999999
Q ss_pred HHHHHHHHhhhccceeeecCCCCCHHHHHHHHHhcCceEEEEcCCchhhHHHHHHHhccccCCCCceEEccCCCCCCccc
Q 046637 76 AMYELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGEPVSTV 155 (301)
Q Consensus 76 ~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 155 (301)
++.++++||...|++..+++|.+.+.++...++.++++++|++.+....+.+....+. ..++++....... ..
T Consensus 84 ~~~~~~la~~~~Ga~~~~~Np~~~~~ei~~~~~~s~~kiif~d~~~~~~i~~~~~~~~------~~i~~l~~~~~~~-~~ 156 (537)
T KOG1176|consen 84 EFVELALAVPMAGAVLNPLNPRLTASEIAKQLKDSKPKLIFVDEDFYDKISEATSKLA------LKIIVLTGDEGVI-SI 156 (537)
T ss_pred HHHHHHHHHHHcCccccccCcccCHHHHHHHHHhcCCeEEEEcCchHHHHHHHHhhcC------CceEEEecccCcc-cc
Confidence 9999999999999999999999999999999999999999999999988877766533 4455554431110 00
Q ss_pred ccCCCCcc-HHHHHhhccccccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhhCCCCCEEEEeccch
Q 046637 156 ASSSGNLE-YESLLAIGKLREVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPTYLWCVPMF 234 (301)
Q Consensus 156 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~ 234 (301)
........ +.++........ ......+++++|+|||||||.||||++||++++.+..+....+.+...++.++.+|++
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~dd~~~il~SSGTTg~PKgV~lsHr~~~~~~~~~~~~~~~~~~~v~l~~lPl~ 235 (537)
T KOG1176|consen 157 SDLVEDLDAFEDLMPEGLPDG-IRPVSEDDTAAILYSSGTTGLPKGVVLSHRNLIANTLSIKIGWELTSDDVYLCTLPLF 235 (537)
T ss_pred ccccccccchhhccccCCCcc-cccCCCCCeEEEecCCCCCCCCceEEEecHHHHHHHHHhhhcccCCCCceEEEechHH
Confidence 00011111 444444333333 4456679999999999999999999999999999888877788888899999999999
Q ss_pred hhhhhHHHHH-HHHhCCeEEeeCCCCHHHHHHHHHhcCcceecCChHHHHHHHcCCCCccccccCC
Q 046637 235 HCNGWCLTWA-VAAQGGTNVCQRTVNAKEIFDNITRHKVTHFGGAPTVLNMIANAPPVFENRFRGR 299 (301)
Q Consensus 235 h~~g~~~~~~-~l~~g~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~~ 299 (301)
|++|+...+. ++..|+++++.+.|++..+++.|++|++|+++++|+++..|++.+....++|++.
T Consensus 236 H~~Gl~~~~~~~~~~~~~ii~~~~f~~~~~~~~i~kykvt~~~~vP~~~~~l~~~p~~~~~~l~sl 301 (537)
T KOG1176|consen 236 HIYGLITLLLSLLAGGTTIICLRKFDAELFLDLIEKYKVTHLFLVPPVLNMLAKSPIVKKYDLSSL 301 (537)
T ss_pred HHhHHHHHHHHHHhCCceEEECCCCCHHHHHHHHHHhCEEEEEcChHHHHHHhcCCccCcccCCcc
Confidence 9999998776 4555666777778899999999999999999999999999999998888888875
|
|
| >PLN02861 long-chain-fatty-acid-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-40 Score=308.21 Aligned_cols=271 Identities=20% Similarity=0.288 Sum_probs=215.5
Q ss_pred CCCHHHHHHHHhhhcCCccEEEEC-------C--eeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHH
Q 046637 13 PLTPISFLERSAVVYRDRPSVVYG-------D--VQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFG 83 (301)
Q Consensus 13 ~~~~~~~l~~~~~~~~~~~al~~~-------~--~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA 83 (301)
..+++++|++.++++|+++|+.+. + +++||+|+.++++++|.+|.++|+++||+|+|+++|+++|+++++|
T Consensus 42 ~~t~~~~l~~~~~~~p~~~al~~~~~~~~~~g~~~~~Ty~el~~~v~~lA~~L~~~Gv~~gd~Vai~~~n~~e~~~~~lA 121 (660)
T PLN02861 42 IDSPWQFFSDAVKKYPNNQMLGRRQVTDSKVGPYVWLTYKEVYDAAIRIGSAIRSRGVNPGDRCGIYGSNCPEWIIAMEA 121 (660)
T ss_pred CCCHHHHHHHHHHhCCCCCeEEEEecCCCCCCCceEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHH
Confidence 458899999999999999999741 1 4799999999999999999999999999999999999999999999
Q ss_pred hhhccceeeecCCCCCHHHHHHHHHhcCceEEEEcCCchhhHHHHHHHhccccCCCCceEEccCCCCCCcc--cccCCCC
Q 046637 84 VPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGEPVST--VASSSGN 161 (301)
Q Consensus 84 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~--~~~~~~~ 161 (301)
|+++|++++|+++.++.+++.+++++++++++|++++....+.......+ ..++.++.+++....... .......
T Consensus 122 ~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~v~~~~~~~~~~~~~~~~~~---~~l~~ii~~~~~~~~~~~~~~~~~~~~ 198 (660)
T PLN02861 122 CNSQGITYVPLYDTLGANAVEFIINHAEVSIAFVQESKISSILSCLPKCS---SNLKTIVSFGDVSSEQKEEAEELGVSC 198 (660)
T ss_pred HHHcCCeEEEecCCCCHHHHHHHHHcCCCCEEEECHHHHHHHHHhhhhCC---CCCEEEEEECCCChhhhhhhhcCCcEE
Confidence 99999999999999999999999999999999998765443333222211 135666666532110000 0001112
Q ss_pred ccHHHHHhhccccccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhh-----CCCCCEEEEeccchhh
Q 046637 162 LEYESLLAIGKLREVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNE-----MGLMPTYLWCVPMFHC 236 (301)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~-----~~~~~~~l~~~p~~h~ 236 (301)
..|+++..............++++++|+|||||||.||||++||.+++.++......+. +..+|++++.+|++|+
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~dd~a~i~yTSGTTG~PKGV~lth~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~lPl~H~ 278 (660)
T PLN02861 199 FSWEEFSLMGSLDCELPPKQKTDICTIMYTSGTTGEPKGVILTNRAIIAEVLSTDHLLKVTDRVATEEDSYFSYLPLAHV 278 (660)
T ss_pred EEHHHHHHhCcccCCCCccCCCceEEEEecCCCCCCCCEEEEecHHHHHHHHHHHhccccccccCCCCCEEEEECcHHHH
Confidence 45666655432221222346789999999999999999999999999987766554433 4678999999999999
Q ss_pred hhhHHHHHHHHhCCeEEeeCCCCHHHHHHHHHhcCcceecCChHHHHHHHc
Q 046637 237 NGWCLTWAVAAQGGTNVCQRTVNAKEIFDNITRHKVTHFGGAPTVLNMIAN 287 (301)
Q Consensus 237 ~g~~~~~~~l~~g~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~ 287 (301)
+|+...+.++..|+++++.+ +++..+++.|++++||+++++|++++.|++
T Consensus 279 ~~~~~~~~~l~~G~~v~~~~-~~~~~~~~~i~~~~~T~~~~vP~~~~~l~~ 328 (660)
T PLN02861 279 YDQVIETYCISKGASIGFWQ-GDIRYLMEDVQALKPTIFCGVPRVYDRIYT 328 (660)
T ss_pred HHHHHHHHHHHhCCEEEEeC-CCHHHHHHHHHHhCCcEEeechHHHHHHHH
Confidence 99876666899999998874 689999999999999999999999999874
|
|
| >PRK07788 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-39 Score=298.77 Aligned_cols=267 Identities=24% Similarity=0.254 Sum_probs=224.4
Q ss_pred CCHHHHHHHHhhhcCCccEEEECCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHhhhccceeee
Q 046637 14 LTPISFLERSAVVYRDRPSVVYGDVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAGAVLCT 93 (301)
Q Consensus 14 ~~~~~~l~~~~~~~~~~~al~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~ 93 (301)
.++.++|++.++++||++|++++++.+||+||.+.++++|+.|.+.|+++||+|+++++|++++++++|||+++|++++|
T Consensus 49 ~~~~~~~~~~a~~~pd~~Al~~~~~~~Ty~el~~~~~~la~~L~~~gi~~gd~V~i~~~n~~~~~~~~la~~~~G~~~v~ 128 (549)
T PRK07788 49 GPFAGLVAHAARRAPDRAALIDERGTLTYAELDEQSNALARGLLALGVRAGDGVAVLARNHRGFVLALYAAGKVGARIIL 128 (549)
T ss_pred chHHHHHHHHHHHCCCceEEEECCCceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHhcCCEEEE
Confidence 38899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHhcCceEEEEcCCchhhHHHHHHHhccccCCCCceEEccCCCCCCcccccCCCCccHHHHHhhccc
Q 046637 94 LNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVASSSGNLEYESLLAIGKL 173 (301)
Q Consensus 94 l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (301)
+++.++.+++.++++.++++++|++.+....+.+...... .+..++....... ....+...++++......
T Consensus 129 l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ 199 (549)
T PRK07788 129 LNTGFSGPQLAEVAAREGVKALVYDDEFTDLLSALPPDLG----RLRAWGGNPDDDE-----PSGSTDETLDDLIAGSST 199 (549)
T ss_pred eCCCCCHHHHHHHHHhcCCcEEEECchhHHHHHhhccccc----cceEEEEecCccc-----cCCcCcccHHHHhcCCCC
Confidence 9999999999999999999999999876655544322111 2222222111110 111344667777654332
Q ss_pred cccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhhCCCCCEEEEeccchhhhhhHHHHHHHHhCCeEE
Q 046637 174 REVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPTYLWCVPMFHCNGWCLTWAVAAQGGTNV 253 (301)
Q Consensus 174 ~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~h~~g~~~~~~~l~~g~~~v 253 (301)
.. .....++.++++|||||||.||||.++|.++..+.......+.+..++++++..|++|.+|+...+.++..|++++
T Consensus 200 ~~--~~~~~~~~~~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~l~~G~~~v 277 (549)
T PRK07788 200 AP--LPKPPKPGGIVILTSGTTGTPKGAPRPEPSPLAPLAGLLSRVPFRAGETTLLPAPMFHATGWAHLTLAMALGSTVV 277 (549)
T ss_pred CC--CCCCCCCCcEEEECCCCCCCCCEEeccCccHHHHHHHHHhhCCCCcCCeEEEccchHHHHHHHHHHHHHHhCCEEE
Confidence 21 1234568899999999999999999999999988887777888889999999999999999987788899999999
Q ss_pred eeCCCCHHHHHHHHHhcCcceecCChHHHHHHHcCCCC
Q 046637 254 CQRTVNAKEIFDNITRHKVTHFGGAPTVLNMIANAPPV 291 (301)
Q Consensus 254 ~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~ 291 (301)
+.+.+++..+++.++++++|++.++|++++.|++....
T Consensus 278 ~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~ 315 (549)
T PRK07788 278 LRRRFDPEATLEDIAKHKATALVVVPVMLSRILDLGPE 315 (549)
T ss_pred ECCCCCHHHHHHHHHHhCCcEEEEHHHHHHHHHhCccc
Confidence 99889999999999999999999999999999987654
|
|
| >PLN02860 o-succinylbenzoate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-40 Score=300.70 Aligned_cols=275 Identities=25% Similarity=0.256 Sum_probs=222.1
Q ss_pred CCCCCCCHHHHHHHHhhhcCCccEEEECCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHhhhcc
Q 046637 9 ANYVPLTPISFLERSAVVYRDRPSVVYGDVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAG 88 (301)
Q Consensus 9 ~~~~~~~~~~~l~~~~~~~~~~~al~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G 88 (301)
++.++.++.++|++.++++|+++|+++.++.+||+||.+++.++|..|.+.|+++||+|+++++|+++++++++||+++|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~p~~~a~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~v~~~n~~~~~~~~la~~~~G 81 (563)
T PLN02860 2 ANHSQAHICQCLTRLATLRGNAVVTISGNRRRTGHEFVDGVLSLAAGLLRLGLRNGDVVAIAALNSDLYLEWLLAVACAG 81 (563)
T ss_pred cchhhhHHHHHHHHHHHhcCCceEEecCCceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHhhcc
Confidence 56788999999999999999999999988999999999999999999999999999999999999999999999999999
Q ss_pred ceeeecCCCCCHHHHHHHHHhcCceEEEEcCCchhhHHHHHH-HhccccCCCCceEEccCCCCCCcccccCCCCccHHHH
Q 046637 89 AVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFE-ILSKTSAKLPLLVLVPECGEPVSTVASSSGNLEYESL 167 (301)
Q Consensus 89 ~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (301)
++++|+++.++.+++.+++++++++++++++........... ..+ .++.++..++..... ..........+++
T Consensus 82 av~vpl~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~----~~~~~i~~~~~~~~~--~~~~~~~~~~~~~ 155 (563)
T PLN02860 82 GIVAPLNYRWSFEEAKSAMLLVRPVMLVTDETCSSWYEELQNDRLP----SLMWQVFLESPSSSV--FIFLNSFLTTEML 155 (563)
T ss_pred EEEEeCCcccCHHHHHHHHHhcCceEEEEecccchHHHHHhhccCC----ceeEEEEecCccccc--ccchhhccccchh
Confidence 999999999999999999999999999998765433333211 111 233344433321100 0000001111111
Q ss_pred Hhhcccc-ccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhhCCCCCEEEEeccchhhhhhHHHHHHH
Q 046637 168 LAIGKLR-EVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPTYLWCVPMFHCNGWCLTWAVA 246 (301)
Q Consensus 168 ~~~~~~~-~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~h~~g~~~~~~~l 246 (301)
....... .......++++++|+|||||||.||||+++|.++..+.......+++.++|+++...|++|.+|+...+.++
T Consensus 156 ~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~l 235 (563)
T PLN02860 156 KQRALGTTELDYAWAPDDAVLICFTSGTTGRPKGVTISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLSSALAML 235 (563)
T ss_pred ccCccccccccCCCCCCCeEEEEecCCCCCCCceEEeehHHHHHHHHHHHhhcCCCCCCEEEEecCchhhccHHHHHHHH
Confidence 1111011 111234578999999999999999999999999988777777778888999999999999999988888999
Q ss_pred HhCCeEEeeCCCCHHHHHHHHHhcCcceecCChHHHHHHHcCC
Q 046637 247 AQGGTNVCQRTVNAKEIFDNITRHKVTHFGGAPTVLNMIANAP 289 (301)
Q Consensus 247 ~~g~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~ 289 (301)
..|+++++.+.+++..+++.++++++|++.++|+++..|++..
T Consensus 236 ~~G~~~v~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~ 278 (563)
T PLN02860 236 MVGACHVLLPKFDAKAALQAIKQHNVTSMITVPAMMADLISLT 278 (563)
T ss_pred HcCceEEecCCCCHHHHHHHHHHhCCeeEEeChHHHHHHHHhh
Confidence 9999999999999999999999999999999999999998764
|
|
| >PLN03102 acyl-activating enzyme; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-38 Score=293.50 Aligned_cols=282 Identities=50% Similarity=0.886 Sum_probs=224.7
Q ss_pred cCCCCCCCCHHHHHHHHhhhcCCccEEEECCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHhhh
Q 046637 7 CSANYVPLTPISFLERSAVVYRDRPSVVYGDVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPM 86 (301)
Q Consensus 7 ~~~~~~~~~~~~~l~~~~~~~~~~~al~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~ 86 (301)
+.+.-++.++.++|++.++.+||++|+++.++++||+||.++++++|..|.++|+++||+|+|+++|++++++++|||++
T Consensus 7 ~~~~~~~~~~~~~l~~~~~~~p~~~Al~~~~~~~Ty~eL~~~~~~~a~~L~~~Gl~~gd~Vai~~~n~~e~~~~~la~~~ 86 (579)
T PLN03102 7 CEANNVPLTPITFLKRASECYPNRTSIIYGKTRFTWPQTYDRCCRLAASLISLNITKNDVVSVLAPNTPAMYEMHFAVPM 86 (579)
T ss_pred CccccccccHHHHHHHHHHhCCCCeEEEECCcEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHh
Confidence 33444567899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccceeeecCCCCCHHHHHHHHHhcCceEEEEcCCchhhHHHHHHHhccccC-CCCceEEccCCCCCCcccccCCCCccHH
Q 046637 87 AGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSA-KLPLLVLVPECGEPVSTVASSSGNLEYE 165 (301)
Q Consensus 87 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 165 (301)
+|++++|++|..+.+++.++++.++++++|++++....+.+.......... ....++.++....... .......+.
T Consensus 87 ~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 163 (579)
T PLN03102 87 AGAVLNPINTRLDATSIAAILRHAKPKILFVDRSFEPLAREVLHLLSSEDSNLNLPVIFIHEIDFPKR---PSSEELDYE 163 (579)
T ss_pred cCcEEeeccccCCHHHHHHHHhccCCeEEEEChhhHHHHHHHHhhccccccccCceEEEecccccccC---CcccccCHH
Confidence 999999999999999999999999999999988777666555443321100 1123444443211100 001224455
Q ss_pred HHHhhcccccc-----CCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhhCCCCCEEEEeccchhhhhhH
Q 046637 166 SLLAIGKLREV-----RRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPTYLWCVPMFHCNGWC 240 (301)
Q Consensus 166 ~~~~~~~~~~~-----~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~h~~g~~ 240 (301)
++......... .....++++++|+|||||||.||||+++|.++..........+.+...+++++.+|++|.+|+.
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~d~~~il~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~ 243 (579)
T PLN03102 164 CLIQRGEPTPSLVARMFRIQDEHDPISLNYTSGTTADPKGVVISHRGAYLSTLSAIIGWEMGTCPVYLWTLPMFHCNGWT 243 (579)
T ss_pred HHHhccCCCCcccccccccCCCCCcEEEEeCCcCCCCCCEEEEecHHHHHHHHHHHhhcCCCCCCeEEecCChhhhcchh
Confidence 55543322111 1124568999999999999999999999999765554444455667788999999999999988
Q ss_pred HHHHHHHhCCeEEeeCCCCHHHHHHHHHhcCcceecCChHHHHHHHcCCCC
Q 046637 241 LTWAVAAQGGTNVCQRTVNAKEIFDNITRHKVTHFGGAPTVLNMIANAPPV 291 (301)
Q Consensus 241 ~~~~~l~~g~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~ 291 (301)
..+.++..|+++++.+.+++..+++.|+++++|++.++|+++..|++....
T Consensus 244 ~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~ 294 (579)
T PLN03102 244 FTWGTAARGGTSVCMRHVTAPEIYKNIEMHNVTHMCCVPTVFNILLKGNSL 294 (579)
T ss_pred HHHHHHHhcCcEEeeccCChHHHHHHHHHcCCeEEEeChHHHHHHHhCccc
Confidence 778889999999999888999999999999999999999999999986543
|
|
| >COG0365 Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-39 Score=284.95 Aligned_cols=265 Identities=22% Similarity=0.296 Sum_probs=217.7
Q ss_pred HHHHHhhh-cCCccEEEECC-----eeeeHHHHHHHHHHHHHHHHh-cCCCCCCEEEEEcCCCHHHHHHHHHhhhcccee
Q 046637 19 FLERSAVV-YRDRPSVVYGD-----VQYTWKETHQRCVKLASGLAH-LGISPGDVVAALAPNVPAMYELHFGVPMAGAVL 91 (301)
Q Consensus 19 ~l~~~~~~-~~~~~al~~~~-----~~~Ty~el~~~~~~la~~L~~-~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~ 91 (301)
.+.+..+. .+|+.|+++.+ +.+||+||.+.+.++|..|++ .|+ +||||++++||.+|.++++|||+++|+++
T Consensus 14 ~~dr~~~~~~~~~~aii~~~e~~~~~~~Ty~~L~~~v~r~A~~L~~~~gv-kGDrV~iymp~~pe~~~a~LA~~riGAI~ 92 (528)
T COG0365 14 ALDRHLEADRPDDTAIIFDGEDGLFRELTYGDLRREVARLANALKDLGGV-KGDRVAIYMPNSPEAVIALLATARIGAIP 92 (528)
T ss_pred hhhhhhhccCCCceEEEEEcCCCCceEEEHHHHHHHHHHHHHHHHHhCCC-CCCEEEEEcCCCHHHHHHHHHHHHcCCEE
Confidence 45665553 46899999864 689999999999999999987 578 99999999999999999999999999999
Q ss_pred eecCCCCCHHHHHHHHHhcCceEEEEcCCchhhHHHH--HHHhccccCCCCceEEccCCCCCCcccccCCCCccHHHHHh
Q 046637 92 CTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGA--FEILSKTSAKLPLLVLVPECGEPVSTVASSSGNLEYESLLA 169 (301)
Q Consensus 92 v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (301)
+|+.+.++++.+...+++++++++|+++......+.. ....... +..+++..... ..|.++.+
T Consensus 93 ~~vf~~f~~~al~~Ri~d~~~k~vit~d~~~~~gk~~~~~~~~~~~---~~~~iv~~r~~------------~~~~~~~~ 157 (528)
T COG0365 93 AVVSPGLSAEAVADRIADLGPKVLIADDGTFRNGKEIALLEDADAV---LSSVVVVPRLG------------LWYDEAVE 157 (528)
T ss_pred eecccCCCHHHHHHHHHccCCCEEEEecccccccccccchhHHHHh---hcceEEecccc------------ccHHHHhh
Confidence 9999999999999999999999999988766543321 1111111 11133333321 56777777
Q ss_pred hccccccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHH-HHHHhhCCCCCEEEEeccchhhhhhHH-HHHHHH
Q 046637 170 IGKLREVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLA-AALFNEMGLMPTYLWCVPMFHCNGWCL-TWAVAA 247 (301)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~-~~~~~~~~~~~~~l~~~p~~h~~g~~~-~~~~l~ 247 (301)
...........+.+++++|+|||||||+||||+++|..++..... ....+.+.++|++.+..++.|++|... ++.+|.
T Consensus 158 ~~~~~~~~~~~~~~dpl~ilYTSGTTG~PKgv~H~~gg~l~~~~~~~~~~~~~~~~Dv~w~~ad~GW~~g~~~~v~~pL~ 237 (528)
T COG0365 158 KASEKFEFEPLPADDPLFLLYTSGTTGKPKGIVHSHGGYLVEHRLTAKFHGDLLPGDRFWNSSDPGWIYGLWYSVFSPLA 237 (528)
T ss_pred ccCCCCCccccCCCCeEEEEeCCCCCCCCceEEEeCchHHHHHHHHHHHhhCCCCCCEEEeCCCchhhhCchHHHHHHHh
Confidence 666554344488999999999999999999999999987766554 445677889999999999999999886 899999
Q ss_pred hCCeEEeeCC--C-CHHHHHHHHHhcCcceecCChHHHHHHHcCCCCccccccCC
Q 046637 248 QGGTNVCQRT--V-NAKEIFDNITRHKVTHFGGAPTVLNMIANAPPVFENRFRGR 299 (301)
Q Consensus 248 ~g~~~v~~~~--~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~~ 299 (301)
.|+++++.+. + +++.+++.|+++++|.++++|+.+++|++....+++|+++.
T Consensus 238 ~Gat~~~~eg~p~~~~~~~~~~ie~~~vt~~~tsPT~~R~l~~~g~~~~~dlssL 292 (528)
T COG0365 238 SGATTVLYDGRPFYSPERLWEALEKYKVTIFGTSPTFLRRLMKLGLGEPYDLSSL 292 (528)
T ss_pred cCCeEEEeCCCCCCCHHHHHHHHHHhCCceEeeCHHHHHHHHhcCCcccccchhh
Confidence 9999998862 2 49999999999999999999999999999988777888764
|
|
| >PRK08279 long-chain-acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-38 Score=294.06 Aligned_cols=275 Identities=25% Similarity=0.278 Sum_probs=227.2
Q ss_pred ccCCCCCCCCHHHHHHHHhhhcCCccEEEECCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHhh
Q 046637 6 RCSANYVPLTPISFLERSAVVYRDRPSVVYGDVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVP 85 (301)
Q Consensus 6 ~~~~~~~~~~~~~~l~~~~~~~~~~~al~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~ 85 (301)
....+....++.+.|.+.++++|+++|++++++.+||+||.+.++++|..|.+.|+++|++|+++++|++++++++|||+
T Consensus 29 ~~~~~~~~~tl~~~l~~~a~~~p~~~Ai~~~~~~~Ty~eL~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~v~~~lA~~ 108 (600)
T PRK08279 29 ALITPDSKRSLGDVFEEAAARHPDRPALLFEDQSISYAELNARANRYAHWAAARGVGKGDVVALLMENRPEYLAAWLGLA 108 (600)
T ss_pred cccCCCCcccHHHHHHHHHHhCCCCcEEEeCCCcccHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHH
Confidence 34455778899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccceeeecCCCCCHHHHHHHHHhcCceEEEEcCCchhhHHHHHHHhccccCCCCceEEccCCCCCCcccccCCCCccHH
Q 046637 86 MAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVASSSGNLEYE 165 (301)
Q Consensus 86 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 165 (301)
++|++++++++..+.+++.++++.++++++|++++....+.+...... ....++..+.... . ....+.
T Consensus 109 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~-~-------~~~~~~ 176 (600)
T PRK08279 109 KLGAVVALLNTQQRGAVLAHSLNLVDAKHLIVGEELVEAFEEARADLA----RPPRLWVAGGDTL-D-------DPEGYE 176 (600)
T ss_pred hcCcEEeecCCCCCHHHHHHHHHhcCCCEEEEChHHHHHHHHHhhhhc----ccceEEEecCccc-c-------ccccHH
Confidence 999999999999999999999999999999999877766655544332 2222333222110 0 012233
Q ss_pred HHHhhcccc-----ccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhhCCCCCEEEEeccchhhhhhH
Q 046637 166 SLLAIGKLR-----EVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPTYLWCVPMFHCNGWC 240 (301)
Q Consensus 166 ~~~~~~~~~-----~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~h~~g~~ 240 (301)
++....... ........+++++|+|||||||.||||.+||.++..++......+++.++|++++.+|++|.+|+.
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~l~~~d~~l~~~pl~h~~g~~ 256 (600)
T PRK08279 177 DLAAAAAGAPTTNPASRSGVTAKDTAFYIYTSGTTGLPKAAVMSHMRWLKAMGGFGGLLRLTPDDVLYCCLPLYHNTGGT 256 (600)
T ss_pred HHhhhcccCCccCCCcccCCCccccEEEEEcCCCCCCCcEEEEeHHHHHHHHHHHHHhcCCCCCcEEEEecCchhhhhHH
Confidence 333221111 112334568999999999999999999999999999988888888999999999999999999987
Q ss_pred H-HHHHHHhCCeEEeeCCCCHHHHHHHHHhcCcceecCChHHHHHHHcCCCCc
Q 046637 241 L-TWAVAAQGGTNVCQRTVNAKEIFDNITRHKVTHFGGAPTVLNMIANAPPVF 292 (301)
Q Consensus 241 ~-~~~~l~~g~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~ 292 (301)
. ++.++..|+++++.+.+++..+++.++++++|++.++|++++.+++.....
T Consensus 257 ~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~p~l~~~l~~~~~~~ 309 (600)
T PRK08279 257 VAWSSVLAAGATLALRRKFSASRFWDDVRRYRATAFQYIGELCRYLLNQPPKP 309 (600)
T ss_pred HHHHHHHhcCcEEEEcCCCCHHHHHHHHHHhcceEEeehHHHHHHHHhCCCCc
Confidence 5 455677888888888999999999999999999999999999998765443
|
|
| >PLN02387 long-chain-fatty-acid-CoA ligase family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-38 Score=299.35 Aligned_cols=272 Identities=19% Similarity=0.205 Sum_probs=216.9
Q ss_pred CCCHHHHHHHHhhhcCCccEEEEC------------C-----------eeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEE
Q 046637 13 PLTPISFLERSAVVYRDRPSVVYG------------D-----------VQYTWKETHQRCVKLASGLAHLGISPGDVVAA 69 (301)
Q Consensus 13 ~~~~~~~l~~~~~~~~~~~al~~~------------~-----------~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i 69 (301)
-.++.++|++.++++||++|+.+. + +++||+|+.+++.++|.+|.++|+++||+|+|
T Consensus 57 ~~t~~~l~~~~~~~~pd~~al~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~lG~~~gd~Vai 136 (696)
T PLN02387 57 ATTLAALFEQSCKKYSDKRLLGTRKLISREFETSSDGRKFEKLHLGEYEWITYGQVFERVCNFASGLVALGHNKEERVAI 136 (696)
T ss_pred CCCHHHHHHHHHHHCCCCceEEEecccccccccccCCcccccccCCCcEEEEHHHHHHHHHHHHHHHHHhCCCCCCEEEE
Confidence 468999999999999999999531 1 24899999999999999999999999999999
Q ss_pred EcCCCHHHHHHHHHhhhccceeeecCCCCCHHHHHHHHHhcCceEEEEcCCchhhHHHHHHHhccccCCCCceEEccCCC
Q 046637 70 LAPNVPAMYELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECG 149 (301)
Q Consensus 70 ~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 149 (301)
+++|+++|+++++||+++|++++|+++.++.+++.+++++++++++|++.+....+.+.....+ .++.++.+++..
T Consensus 137 ~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~li~~~~~~~~l~~~~~~~~----~l~~ii~~~~~~ 212 (696)
T PLN02387 137 FADTRAEWLIALQGCFRQNITVVTIYASLGEEALCHSLNETEVTTVICDSKQLKKLIDISSQLE----TVKRVIYMDDEG 212 (696)
T ss_pred EcCCCHHHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHccCCCEEEECHHHHHHHHHHhhccC----CceEEEEECCCC
Confidence 9999999999999999999999999999999999999999999999998776666555544443 577788876542
Q ss_pred CCCcc---cccCCCCccHHHHHhhcccc-ccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHh-hCCCC
Q 046637 150 EPVST---VASSSGNLEYESLLAIGKLR-EVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFN-EMGLM 224 (301)
Q Consensus 150 ~~~~~---~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~-~~~~~ 224 (301)
..... .........|.++...+... .......++++++|+|||||||.||||++||.+++.++......+ .+.++
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~I~yTSGTTG~PKGV~lth~~l~~~~~~~~~~~~~~~~~ 292 (696)
T PLN02387 213 VDSDSSLSGSSNWTVSSFSEVEKLGKENPVDPDLPSPNDIAVIMYTSGSTGLPKGVMMTHGNIVATVAGVMTVVPKLGKN 292 (696)
T ss_pred chhhhhhhccCCcEEEEHHHHHHhhccCCCCCCCCCccceEEEEecCCCCCCCCEEEEEcHHHHHHHHHHHhhcCCCCCC
Confidence 21000 00011124577766544322 122235679999999999999999999999999998887765543 57889
Q ss_pred CEEEEeccchhhhhhHHHHHHHHhCCeEEeeCCC------C--HHHHHHHHHhcCcceecCChHHHHHHHcC
Q 046637 225 PTYLWCVPMFHCNGWCLTWAVAAQGGTNVCQRTV------N--AKEIFDNITRHKVTHFGGAPTVLNMIANA 288 (301)
Q Consensus 225 ~~~l~~~p~~h~~g~~~~~~~l~~g~~~v~~~~~------~--~~~~~~~i~~~~~t~~~~~P~~~~~l~~~ 288 (301)
|++++.+|++|++++...+.++..|+++.+.... + +..+++.+++++||++.++|.+++.+.+.
T Consensus 293 d~~l~~lPl~Hi~~~~~~~~~~~~g~~i~~g~~~~l~~~~~~~~~~~~~~i~~~~pT~~~~vP~~l~~l~~~ 364 (696)
T PLN02387 293 DVYLAYLPLAHILELAAESVMAAVGAAIGYGSPLTLTDTSNKIKKGTKGDASALKPTLMTAVPAILDRVRDG 364 (696)
T ss_pred CEEEEECcHHHHHHHHHHHHHHHhCCEEEECChhhhcccccccccCchhhHHHhCCcEEEehhHHHHHHHHH
Confidence 9999999999999988766677788887764321 1 23466789999999999999999999754
|
|
| >PRK06187 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-38 Score=285.63 Aligned_cols=280 Identities=31% Similarity=0.457 Sum_probs=241.0
Q ss_pred CCCCCCHHHHHHHHhhhcCCccEEEECCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHhhhccc
Q 046637 10 NYVPLTPISFLERSAVVYRDRPSVVYGDVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAGA 89 (301)
Q Consensus 10 ~~~~~~~~~~l~~~~~~~~~~~al~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~ 89 (301)
.+.+.++.++|.+.++.+|+++|+.+.++.+||+||.+.+.++|+.|.+.|+++|++|+++++|++++++++|||+++|+
T Consensus 2 ~~~~~~l~~~l~~~~~~~p~~~a~~~~~~~~Ty~~l~~~~~~~a~~L~~~g~~~~~~V~l~~~~~~~~~~~~la~~~~G~ 81 (521)
T PRK06187 2 QDYPLTIGRILRHGARKHPDKEAVYFDGRRTTYAELDERVNRLANALRALGVKKGDRVAVFDWNSHEYLEAYFAVPKIGA 81 (521)
T ss_pred CcccCCHHHHHHHHHHHCCCceEEEeCCceEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCe
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeecCCCCCHHHHHHHHHhcCceEEEEcCCchhhHHHHHHHhccccCCCCceEEccCCCCCCcccccCCCCccHHHHHh
Q 046637 90 VLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVASSSGNLEYESLLA 169 (301)
Q Consensus 90 ~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (301)
+++++++..+.+++..+++.+++++++++......+.+.....+ ..++++.+++.... ........+.++..
T Consensus 82 ~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~----~~~~~~~~~~~~~~ 153 (521)
T PRK06187 82 VLHPINIRLKPEEIAYILNDAEDRVVLVDSEFVPLLAAILPQLP----TVRTVIVEGDGPAA----PLAPEVGEYEELLA 153 (521)
T ss_pred EEEecccCCCHHHHHHHHHhcCCeEEEEcchHHHHHHHHhhccC----CccEEEEecCcccc----ccccccccHHHHhh
Confidence 99999999999999999999999999999887777666655443 45566666554311 11223355666655
Q ss_pred hccccccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhhCCCCCEEEEeccchhhhhhHHHHHHHHhC
Q 046637 170 IGKLREVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPTYLWCVPMFHCNGWCLTWAVAAQG 249 (301)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~h~~g~~~~~~~l~~g 249 (301)
.............++++++.|||||||.||++.+||.++..........+++.+++++++..|++|.+++...+.++..|
T Consensus 154 ~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~G 233 (521)
T PRK06187 154 AASDTFDFPDIDENDAAAMLYTSGTTGHPKGVVLSHRNLFLHSLAVCAWLKLSRDDVYLVIVPMFHVHAWGLPYLALMAG 233 (521)
T ss_pred cCCccCCCCCCCccceEEEEECCCCCCCCceEEeehHHHHHHHHHHHHhhCCCCCCEEEEeCCchHHhhHHHHHHHHHhC
Confidence 44433333446678899999999999999999999999998888888888999999999999999999988777799999
Q ss_pred CeEEeeCCCCHHHHHHHHHhcCcceecCChHHHHHHHcCCCCcccccc
Q 046637 250 GTNVCQRTVNAKEIFDNITRHKVTHFGGAPTVLNMIANAPPVFENRFR 297 (301)
Q Consensus 250 ~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~ 297 (301)
+++++.+.+++..+++.++++++|.++++|++++.|.+.......+++
T Consensus 234 ~~~v~~~~~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~ 281 (521)
T PRK06187 234 AKQVIPRRFDPENLLDLIETERVTFFFAVPTIWQMLLKAPRAYFVDFS 281 (521)
T ss_pred CEEEecCCCCHHHHHHHHHHhCCeEEEchHHHHHHHHcCcCCCccCcc
Confidence 999999888999999999999999999999999999988766444444
|
|
| >KOG1256 consensus Long-chain acyl-CoA synthetases (AMP-forming) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-39 Score=285.66 Aligned_cols=275 Identities=23% Similarity=0.234 Sum_probs=230.7
Q ss_pred CCCCCCHHHHHHHHhhhcCCccEEEECC--------eeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHH
Q 046637 10 NYVPLTPISFLERSAVVYRDRPSVVYGD--------VQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELH 81 (301)
Q Consensus 10 ~~~~~~~~~~l~~~~~~~~~~~al~~~~--------~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~ 81 (301)
.....++++.|.+.+..+|+.+++.... +++||+|+.+++..++.+|.++|+++++.|+|++.|++||+++.
T Consensus 71 ~~~~~T~~~~f~~~~~~~~~~p~LG~r~~~~~~~~~~~~tY~q~~e~~~~~~~~l~~lG~~~~~~VGIy~~N~pEWiis~ 150 (691)
T KOG1256|consen 71 FDGPLTLYEGFRRSVEKSGNGPMLGTRVIVDGKGPYEWLTYKQVYERAENLGSGLRKLGVKEDSKVGIYAFNRPEWIISE 150 (691)
T ss_pred CCCcccHHHHhhcchhccCCCCceeEEecccCCCCcEEEEHHHHHHHHHHHHHHHHHhCCCCCceEEEeccCChhhHHhH
Confidence 4568899999999999999999998733 68999999999999999999999999999999999999999999
Q ss_pred HHhhhccceeeecCCCCCHHHHHHHHHhcCceEEEEcC-CchhhHHHHHHHhccccCCCCceEEccCCCCCCcccccCC-
Q 046637 82 FGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDY-QLLPIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVASSS- 159 (301)
Q Consensus 82 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~- 159 (301)
+||...|.+.|||+..++++.++++++++...++|+|. +....+.+..... ..+.++.+|.++...+.........
T Consensus 151 ~a~~~~~~v~VplYdTlg~ea~~~Ii~~~e~~iv~vd~~~k~~~ll~~~~~~--~~~~LK~iI~~~~~~~~~~~~~~~~g 228 (691)
T KOG1256|consen 151 MACYAYSLVNVPLYDTLGAEAVHYIINHAEISIVFVDNAKKAEKLLEIKEND--SLPSLKAIIQLDEPSDELKEKAENNG 228 (691)
T ss_pred HHHHhcCCEEeecccCCCHHHHHHHHHhcceeEEEEeCHHHHHHHHhhcccc--cCccceeEEEecCCchhhhhhhhcCC
Confidence 99999999999999999999999999999999999994 3444443333320 1226889999998876544444433
Q ss_pred -CCccHHHHHhhccccccC--CCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHH---HHh---hCCCCCEEEEe
Q 046637 160 -GNLEYESLLAIGKLREVR--RPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAA---LFN---EMGLMPTYLWC 230 (301)
Q Consensus 160 -~~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~---~~~---~~~~~~~~l~~ 230 (301)
...+|+++.+-+...... ..+.+++.+.|.|||||||+||||++||.|+++.+.... ... ....+|++++.
T Consensus 229 v~v~S~~e~~~lG~~~~~~~~~~p~p~d~atI~yTSGTTG~PKGVMLTH~Niv~~v~~~~~~~~~~~~~~~~~~dv~lSy 308 (691)
T KOG1256|consen 229 VEVYSWDEFEELGKKNQRKPRVPPKPDDLATICYTSGTTGNPKGVMLTHRNIVSDVAGIFFLSAAENAKATVGDDVYLSY 308 (691)
T ss_pred eEEEEHHHHHhhcccccCCCCCCCCccceEEEEEcCCCCCCCceEEEeccceeehhhhhhhhhhcccccccccCceEEEe
Confidence 357899999988665222 468899999999999999999999999999998655322 111 12236999999
Q ss_pred ccchhhhhhHHHHHHHHhCCeEEeeCCCCHHHHHHHHHhcCcceecCChHHHHHHHc
Q 046637 231 VPMFHCNGWCLTWAVAAQGGTNVCQRTVNAKEIFDNITRHKVTHFGGAPTVLNMIAN 287 (301)
Q Consensus 231 ~p~~h~~g~~~~~~~l~~g~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~ 287 (301)
+|+.|++..++-...+..|+.+.+.. .|+..+.+.++..+||.+.++|.+++++.+
T Consensus 309 LPLAHi~er~~~~~~~~~G~~IgF~~-gD~~~l~~dlk~lkPT~f~~VPRVl~riye 364 (691)
T KOG1256|consen 309 LPLAHIFERVVELYTFYIGAKIGFAR-GDILKLTDDLKELKPTVFPGVPRVLERIYE 364 (691)
T ss_pred CcHHHHHHHHHHHhHhhcccEEEEec-CChHHHHHHHHHhCCcEEeccHhHHHHHHH
Confidence 99999999888666778899999887 499999999999999999999999999976
|
|
| >PRK13295 cyclohexanecarboxylate-CoA ligase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-38 Score=287.58 Aligned_cols=275 Identities=25% Similarity=0.254 Sum_probs=226.9
Q ss_pred CCCCCCCHHHHHHHHhhhcCCccEEEECC------eeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHH
Q 046637 9 ANYVPLTPISFLERSAVVYRDRPSVVYGD------VQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHF 82 (301)
Q Consensus 9 ~~~~~~~~~~~l~~~~~~~~~~~al~~~~------~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~l 82 (301)
-.|...++.+.|.+.++.+|+++|+++.+ +.+||+||.++++++|..|.+.|+++|++|+++++|++++++++|
T Consensus 19 ~~~~~~~l~~~l~~~a~~~p~~~A~~~~~~~~~~~~~~Ty~el~~~~~~~a~~L~~~g~~~g~~Val~~~n~~e~~~~~l 98 (547)
T PRK13295 19 GHWHDRTINDDLDACVASCPDKTAVTAVRLGTGAPRRFTYRELAALVDRVAVGLARLGVGRGDVVSCQLPNWWEFTVLYL 98 (547)
T ss_pred CCCcCCCHHHHHHHHHHHCCCceEEEecCCCccccceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCChHHHHHHH
Confidence 45677899999999999999999999865 899999999999999999999999999999999999999999999
Q ss_pred HhhhccceeeecCCCCCHHHHHHHHHhcCceEEEEcCCch-----hhHHHHHHHhccccCCCCceEEccCCCCCCccccc
Q 046637 83 GVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLL-----PIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVAS 157 (301)
Q Consensus 83 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 157 (301)
||+++|++++|++|..+.+++.++++.++++++++++... +.+.+...... .+..++.++....
T Consensus 99 a~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~------- 167 (547)
T PRK13295 99 ACSRIGAVLNPLMPIFRERELSFMLKHAESKVLVVPKTFRGFDHAAMARRLRPELP----ALRHVVVVGGDGA------- 167 (547)
T ss_pred HHHhcCcEEeccccccCHHHHHHHHHhcCceEEEEeccccCcchHHHHHHHhhhCC----CcceEEEecCCCc-------
Confidence 9999999999999999999999999999999999987642 22222222222 4455555543211
Q ss_pred CCCCccHHHHHhhcc--------ccccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhhCCCCCEEEE
Q 046637 158 SSGNLEYESLLAIGK--------LREVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPTYLW 229 (301)
Q Consensus 158 ~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~ 229 (301)
..+.++..... .........++++++|+|||||||.||+|.++|.++..++......+++.+++++++
T Consensus 168 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~ 243 (547)
T PRK13295 168 ----DSFEALLITPAWEQEPDAPAILARLRPGPDDVTQLIYTSGTTGEPKGVMHTANTLMANIVPYAERLGLGADDVILM 243 (547)
T ss_pred ----cCHHHHhhCCccccccccccccccCCCCCcceeEEEeCCCCCCCCCEEEeccHHHHHHHHHHHHHhCCCCCCeEEE
Confidence 23433332110 001112345689999999999999999999999999988888777888899999999
Q ss_pred eccchhhhhhHH-HHHHHHhCCeEEeeCCCCHHHHHHHHHhcCcceecCChHHHHHHHcCCCCccccccC
Q 046637 230 CVPMFHCNGWCL-TWAVAAQGGTNVCQRTVNAKEIFDNITRHKVTHFGGAPTVLNMIANAPPVFENRFRG 298 (301)
Q Consensus 230 ~~p~~h~~g~~~-~~~~l~~g~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~ 298 (301)
..|++|.+|+.. ++.++..|+++++.+.+++..+++.++++++|++.++|+++..|.+.......++++
T Consensus 244 ~~p~~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~l~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~ 313 (547)
T PRK13295 244 ASPMAHQTGFMYGLMMPVMLGATAVLQDIWDPARAAELIRTEGVTFTMASTPFLTDLTRAVKESGRPVSS 313 (547)
T ss_pred ecCchhhhhHHHHHHHHHHcCCeEEeCCCCCHHHHHHHHHHcCCcEEEecHHHHHHHHhcccccCCCccc
Confidence 999999999764 788899999999999899999999999999999999999999999876655555543
|
|
| >PRK07656 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-37 Score=284.19 Aligned_cols=278 Identities=29% Similarity=0.365 Sum_probs=234.4
Q ss_pred CCCCHHHHHHHHhhhcCCccEEEECCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHhhhcccee
Q 046637 12 VPLTPISFLERSAVVYRDRPSVVYGDVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAGAVL 91 (301)
Q Consensus 12 ~~~~~~~~l~~~~~~~~~~~al~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~ 91 (301)
...++.+.|++.++.+|+++|+.+.++++||+||.+.+.++|..|.+.|+++||+|+++++|+++++++++||+++|+++
T Consensus 3 ~~~~i~~~l~~~~~~~~~~~a~~~~~~~~Ty~~l~~~~~~~a~~L~~~gv~~g~~V~l~~~~~~~~~~~~la~~~~G~~~ 82 (513)
T PRK07656 3 EWMTLPELLARAARRFGDKEAYVFGDQRLTYAELNARVRRAAAALAALGIGKGDRVAIWAPNSPHWVIAALGALKAGAVV 82 (513)
T ss_pred ccccHHHHHHHHHHHCCCCeEEEeCCCceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHHHHHhcCeEE
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCCCHHHHHHHHHhcCceEEEEcCCchhhHHHHHHHhccccCCCCceEEccCCCCCCcccccCCCCccHHHHHhhc
Q 046637 92 CTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVASSSGNLEYESLLAIG 171 (301)
Q Consensus 92 v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (301)
+|+++..+.+++..+++.++++++++++.............. .++.++......... .......|.++....
T Consensus 83 v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 154 (513)
T PRK07656 83 VPLNTRYTADEAAYILARGDAKALFVLGLFLGVDYSATTRLP----ALEHVVICETEEDDP----HTEKMKTFTDFLAAG 154 (513)
T ss_pred EecCcccCHHHHHHHHhhcCceEEEEchhhHHHHHHHHhccC----CccEEEEEcCccccc----CccccccHHHHHhcC
Confidence 999999999999999999999999999887665555443332 445555444332110 011224566666544
Q ss_pred cccccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhhCCCCCEEEEeccchhhhhhHH-HHHHHHhCC
Q 046637 172 KLREVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPTYLWCVPMFHCNGWCL-TWAVAAQGG 250 (301)
Q Consensus 172 ~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~h~~g~~~-~~~~l~~g~ 250 (301)
..........++++++|+|||||||.||+|.++|.++..........+++.+++++++..|++|.+|+.. ++.++..|+
T Consensus 155 ~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~ 234 (513)
T PRK07656 155 DPAERAPEVDPDDVADILFTSGTTGRPKGAMLTHRQLLSNAADWAEYLGLTEGDRYLAANPFFHVFGYKAGVNAPLMRGA 234 (513)
T ss_pred CCCCCcCCCCCCceEEEEeCCCCCCCCCEEEEecHHHHHHHHHHHHhhCCCCCCeEEEccchHHHHHHHHHHHHHHHcCc
Confidence 3322233467789999999999999999999999999988888888888999999999999999999775 788899999
Q ss_pred eEEeeCCCCHHHHHHHHHhcCcceecCChHHHHHHHcCCCCcccccc
Q 046637 251 TNVCQRTVNAKEIFDNITRHKVTHFGGAPTVLNMIANAPPVFENRFR 297 (301)
Q Consensus 251 ~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~ 297 (301)
++++.+.+++..+++.++++++|++.++|.++..|.+.......+++
T Consensus 235 ~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~ 281 (513)
T PRK07656 235 TILPLPVFDPDEVFRLIETERITVLPGPPTMYNSLLQHPDRSAEDLS 281 (513)
T ss_pred eEEecCcCCHHHHHHHHHHhCCeEEechHHHHHHHHcCCCcCCCCcc
Confidence 99998888999999999999999999999999999988766554544
|
|
| >COG1022 FAA1 Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-38 Score=284.47 Aligned_cols=268 Identities=25% Similarity=0.312 Sum_probs=205.8
Q ss_pred CCCHHHHHHHHhhhcCCccEEEECC----eeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHhhhcc
Q 046637 13 PLTPISFLERSAVVYRDRPSVVYGD----VQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAG 88 (301)
Q Consensus 13 ~~~~~~~l~~~~~~~~~~~al~~~~----~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G 88 (301)
..++...+.+.++.+|+..++.... +.+||+|+.+++..+|.+|...|+.+||+|+|++.|+++|+++.+||+..|
T Consensus 15 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ty~e~~~~v~~~a~gL~~lg~~~gdrvai~a~nr~eW~i~d~a~~~~g 94 (613)
T COG1022 15 IHTLPKRLAERVKDRPDGVALMYKELGGWEAITYRELYERVRALASGLLSLGIPAGDRVAIFAANRPEWAIADLAILALG 94 (613)
T ss_pred cccHHHHHHHHhhcCCcceeEeeecCCcceEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCHHHHHHHHHHHHcC
Confidence 4678899999999999988888633 789999999999999999999999779999999999999999999999999
Q ss_pred ceeeecCCCCCHHHHHHHHHhcCceEEEEcCCch-hhHHHHHHHhccccCCCCceEEccC---CCCC----CcccccCCC
Q 046637 89 AVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLL-PIAQGAFEILSKTSAKLPLLVLVPE---CGEP----VSTVASSSG 160 (301)
Q Consensus 89 ~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~---~~~~----~~~~~~~~~ 160 (301)
++.||+++.++++++.++|+.++++++|++.+.. +.+......++ .+..++...+ .... ........+
T Consensus 95 ~v~Vp~y~t~~~~~~~~iL~~se~~~i~~e~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (613)
T COG1022 95 AVSVPIYSTSTPEQLAYILNESESKVIFVENQELLDLVLPVLEDCP----KVVDLIVIIDLVREAVEAKALVLEVFPDEG 170 (613)
T ss_pred CeEEecCCCCCHHHHHHHHhcCCceEEEecchHHHHHHHhhhcccc----chhhhhhhhhhhhhccchhhcccccccccc
Confidence 9999999999999999999999999999997544 33443333222 1111111111 0000 000000011
Q ss_pred CccHHHHHhhccccccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhh-CCCCCEEEEeccchhhhhh
Q 046637 161 NLEYESLLAIGKLREVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNE-MGLMPTYLWCVPMFHCNGW 239 (301)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~-~~~~~~~l~~~p~~h~~g~ 239 (301)
...+ ...............+||+|.|+|||||||.||||++||+|+++++........ ..++|++++.+|+.|++.+
T Consensus 171 ~~~~--~~~~~~~~~~~~~~~~dDlatiiYTSGTTG~PKGVmLth~N~~~~v~~~~~~~~~~~~~d~~LsfLPlaHi~Er 248 (613)
T COG1022 171 ISLF--LIDSAGLEGRIAPPKPDDLATIIYTSGTTGTPKGVMLTHRNLLAQVAGIDEVLPPIGPGDRVLSFLPLAHIFER 248 (613)
T ss_pred chhh--hhcccccccccCCCCccceEEEEEcCCCCCCCceEEEehHHHHHHHHHHHhhCCCCCCCcEEEEeCcHHHHHHH
Confidence 1111 011111112224578999999999999999999999999999999999999996 8999999999999999998
Q ss_pred HHHHHHHHhCCeEEeeCCCCHHHHHHHHHhcCcceecCChHHHHHHHc
Q 046637 240 CLTWAVAAQGGTNVCQRTVNAKEIFDNITRHKVTHFGGAPTVLNMIAN 287 (301)
Q Consensus 240 ~~~~~~l~~g~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~ 287 (301)
++.......|+..++ ...++.++++.++++|||.++.+|.+|+.+.+
T Consensus 249 ~~~~~~~~~~g~~~~-~~~~~~~~~~dl~~~rPt~m~~VPRvwE~i~~ 295 (613)
T COG1022 249 AFEGGLALYGGVTVL-FKEDPRTLLEDLKEVRPTVMIGVPRVWEKVYK 295 (613)
T ss_pred HHHHHHHhhcceEEE-ecCCHHHHHHHHHHhCCeEEeechHHHHHHHH
Confidence 864333333333333 34589999999999999999999999999875
|
|
| >PRK08314 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-37 Score=286.54 Aligned_cols=285 Identities=24% Similarity=0.292 Sum_probs=232.7
Q ss_pred cCCCCCCCCHHHHHHHHhhhcCCccEEEECCeeeeHHHHHHHHHHHHHHHHhc-CCCCCCEEEEEcCCCHHHHHHHHHhh
Q 046637 7 CSANYVPLTPISFLERSAVVYRDRPSVVYGDVQYTWKETHQRCVKLASGLAHL-GISPGDVVAALAPNVPAMYELHFGVP 85 (301)
Q Consensus 7 ~~~~~~~~~~~~~l~~~~~~~~~~~al~~~~~~~Ty~el~~~~~~la~~L~~~-gv~~g~~V~i~~~n~~~~~~~~lA~~ 85 (301)
...+.+..++.+.|.+.++.+|+++|+++.++.+||+||.+++.+++..|.+. |+++|++|+++++|++++++++|||+
T Consensus 3 ~~~~~~~~tl~~~l~~~a~~~~~~~a~~~~~~~~Ty~~l~~~v~~~a~~L~~~~g~~~g~~V~i~~~~~~~~~~~~lA~~ 82 (546)
T PRK08314 3 KSLTLPETSLFHNLEVSARRYPDKTAIVFYGRAISYRELLEEAERLAGYLQQECGVRKGDRVLLYMQNSPQFVIAYYAIL 82 (546)
T ss_pred CCCCCCCCCHHHHHHHHHHHcCCCcceeecCceecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEECCCChHHHHHHHHHH
Confidence 34556788999999999999999999999999999999999999999999999 99999999999999999999999999
Q ss_pred hccceeeecCCCCCHHHHHHHHHhcCceEEEEcCCchhhHHHHHHHhccccCCCCceEEccCCCCC--------------
Q 046637 86 MAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGEP-------------- 151 (301)
Q Consensus 86 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-------------- 151 (301)
++|++++|++|..+.+++.++++.+++++++++.+....+....... .++.+++.+.....
T Consensus 83 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (546)
T PRK08314 83 RANAVVVPVNPMNREEELAHYVTDSGARVAIVGSELAPKVAPAVGNL-----RLRHVIVAQYSDYLPAEPEIAVPAWLRA 157 (546)
T ss_pred HcCcEEeecCcCcCHHHHHHHHHhCCCeEEEEccchhhhHHHHhhcc-----CcceEEEecchhhcccccccCccccccc
Confidence 99999999999999999999999999999999987766554433321 12333332110000
Q ss_pred --CcccccCCCCccHHHHHhhccccccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhhCCCCCEEEE
Q 046637 152 --VSTVASSSGNLEYESLLAIGKLREVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPTYLW 229 (301)
Q Consensus 152 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~ 229 (301)
........++..+++........ ......++++++|+|||||||.||+|.++|.+++.++......+.+..+|++++
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~ 236 (546)
T PRK08314 158 EPPLQALAPGGVVAWKEALAAGLAP-PPHTAGPDDLAVLPYTSGTTGVPKGCMHTHRTVMANAVGSVLWSNSTPESVVLA 236 (546)
T ss_pred ccccccccccccccHHHHhcccCCC-CCCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhhCCCCCceEEE
Confidence 00001112334566555432221 223456789999999999999999999999999998888777888899999999
Q ss_pred eccchhhhhhHH-HHHHHHhCCeEEeeCCCCHHHHHHHHHhcCcceecCChHHHHHHHcCCCCcccccc
Q 046637 230 CVPMFHCNGWCL-TWAVAAQGGTNVCQRTVNAKEIFDNITRHKVTHFGGAPTVLNMIANAPPVFENRFR 297 (301)
Q Consensus 230 ~~p~~h~~g~~~-~~~~l~~g~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~ 297 (301)
..|++|.+|+.. ++.++..|+++++.+.+++..+++.++++++|++.++|+++..++..+.....+++
T Consensus 237 ~~p~~~~~g~~~~~~~~l~~G~~i~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~ll~~~~~~~~~~~ 305 (546)
T PRK08314 237 VLPLFHVTGMVHSMNAPIYAGATVVLMPRWDREAAARLIERYRVTHWTNIPTMVVDFLASPGLAERDLS 305 (546)
T ss_pred EcCchHHHHHHHHHHHHHHcCCeEEecCCCCHHHHHHHHHHhcCceecccHHHHHHHHhCCCccccCch
Confidence 999999999764 67889999999999999999999999999999999999999999987655544443
|
|
| >KOG1179 consensus Very long-chain acyl-CoA synthetase/fatty acid transporter [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-38 Score=272.94 Aligned_cols=275 Identities=21% Similarity=0.233 Sum_probs=230.4
Q ss_pred CCCCCHHHHHHHHhhhcCCccEEEECC--eeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHhhhcc
Q 046637 11 YVPLTPISFLERSAVVYRDRPSVVYGD--VQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAG 88 (301)
Q Consensus 11 ~~~~~~~~~l~~~~~~~~~~~al~~~~--~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G 88 (301)
-...++++.|.+.++++||++|+++.+ +++||+|+.+.+.++|+.|...|++.||.|+++++|++|++.+.++++++|
T Consensus 74 r~~~ti~~~F~~~vrr~p~k~aii~~~~~~~~Tf~e~~~~s~~~A~~~~~~~l~~GD~VAL~men~pefv~lWlGLaKlG 153 (649)
T KOG1179|consen 74 RERRTIAELFLSQVRRQPDKPAIIYEGPFQSLTFAELDARSNRVANYLHAEGLKAGDVVALLMENRPEFVALWLGLAKLG 153 (649)
T ss_pred ccCCcHHHHHHHHHHhCCCccEEEEeCCCceeeHHHHHHHHHHHHHHHHHhhcccCCEEEEecCCChhHHHHHHhHHhhC
Confidence 356789999999999999999999977 799999999999999999999999999999999999999999999999999
Q ss_pred ceeeecCCCCCHHHHHHHHHhcCceEEEEcCCchhhHHHHHHHhccccCCCCceEEccCCCCCCcccccCCCCccHHHHH
Q 046637 89 AVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVASSSGNLEYESLL 168 (301)
Q Consensus 89 ~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (301)
++...||++...+-|.|-++.++++++|++.+..+.+.++...... +--.+...+.... ..+...+.+.+
T Consensus 154 v~tA~iNtNlR~~~LlHsi~~s~aralv~~~el~~~~~e~~~~l~~---~~i~~~~~~~~~~-------~~g~~~L~~~l 223 (649)
T KOG1179|consen 154 VITAFINTNLRGEPLLHSITVSGARALVVGPELLNALEEILPLLIK---NGIHVFSLGPTSV-------PDGIESLLAKL 223 (649)
T ss_pred ceeeeeccccccchhhhhhhhcCceEEEECHHHHHHHHhcchhhhh---ccceEEecCCCCC-------CchHHHHHHhh
Confidence 9999999999999999999999999999999988777776433321 1111222221111 12223333333
Q ss_pred hhccccc----cCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhhCCCCCEEEEeccchhhhhhH-HHH
Q 046637 169 AIGKLRE----VRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPTYLWCVPMFHCNGWC-LTW 243 (301)
Q Consensus 169 ~~~~~~~----~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~h~~g~~-~~~ 243 (301)
+.....+ ........++++.+|||||||.||++++||.-...........++++.+|+++.++|+||..|.. .+-
T Consensus 224 ~~~~~~~vp~~~~~~~~~~s~~lyIYTSGTTGLPKaAvith~r~~~~a~g~~~~~g~~~~DvvY~~lPLYHsaa~ilGi~ 303 (649)
T KOG1179|consen 224 SAAPKHPVPVSTRSGLTFRSPLLYIYTSGTTGLPKAAVITHLRYLQGAAGFYYVFGMTADDVVYTTLPLYHSAAGILGIG 303 (649)
T ss_pred cccccCCCCcccCCCccccceeEEEEcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCccceEEEcchhHHHHHHHHHHH
Confidence 3333332 22345567899999999999999999999999888777788899999999999999999998855 478
Q ss_pred HHHHhCCeEEeeCCCCHHHHHHHHHhcCcceecCChHHHHHHHcCCCCcccc
Q 046637 244 AVAAQGGTNVCQRTVNAKEIFDNITRHKVTHFGGAPTVLNMIANAPPVFENR 295 (301)
Q Consensus 244 ~~l~~g~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~ 295 (301)
.++..|+|+|+-++|++.+|++.-.+|+||++...-.+.+.|++.|..+.++
T Consensus 304 ~~l~~GaT~VlrkKFSAS~FW~DC~k~~~Tv~QYIGElcRYLl~~p~~~~er 355 (649)
T KOG1179|consen 304 GCLLHGATVVLRKKFSASNFWDDCRKYNVTVIQYIGELCRYLLNQPPSPEER 355 (649)
T ss_pred HHHhcCceEEEecccchhhhHHHHHHhCCeeeehHHHHHHHHHcCCCChhhc
Confidence 8899999999999999999999999999999999999999999998765443
|
|
| >PLN03052 acetate--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-38 Score=294.58 Aligned_cols=278 Identities=19% Similarity=0.236 Sum_probs=215.9
Q ss_pred CCHH-HHHHHHhhhcCCccEEEECC--------eeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHh
Q 046637 14 LTPI-SFLERSAVVYRDRPSVVYGD--------VQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGV 84 (301)
Q Consensus 14 ~~~~-~~l~~~~~~~~~~~al~~~~--------~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~ 84 (301)
.|+. .+|.+.++++||++|+++.+ +.+||+||.+++.++|+.|++.|+++||+|+++++|+++++++++||
T Consensus 174 ln~~~~~l~~~~~~~pd~~Ai~~~~e~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GdrVai~~pn~~e~via~LA~ 253 (728)
T PLN03052 174 LNVAECCLTPKPSKTDDSIAIIWRDEGSDDLPVNRMTLSELRSQVSRVANALDALGFEKGDAIAIDMPMNVHAVIIYLAI 253 (728)
T ss_pred eEHHHHHHHHHhccCCCCeEEEEECCCCCCCceEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHH
Confidence 3444 35666666789999999854 37999999999999999999999999999999999999999999999
Q ss_pred hhccceeeecCCCCCHHHHHHHHHhcCceEEEEcCCch------hhHHHHHHHhccccCCCCceEEccCCCCCCcccccC
Q 046637 85 PMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLL------PIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVASS 158 (301)
Q Consensus 85 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~------~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 158 (301)
+++|++++|++|.++.+++.+++++++++++|+++... .....+.+.. .++++++....... .....
T Consensus 254 ~~~Gav~vpi~p~~~~~~l~~rl~~~~~k~lit~d~~~~~gk~~~~~~~~~~~~------~~~~iv~~~~~~~~-~~~~~ 326 (728)
T PLN03052 254 ILAGCVVVSIADSFAPSEIATRLKISKAKAIFTQDVIVRGGKSIPLYSRVVEAK------APKAIVLPADGKSV-RVKLR 326 (728)
T ss_pred HHcCCEEEeeCCCCCHHHHHHHHHhcCceEEEEcCccccCCcccchHHHHHHhc------CCcEEEEeCCCCcc-ccccc
Confidence 99999999999999999999999999999999987543 1222222211 12344433221100 00001
Q ss_pred CCCccHHHHHhhcccc-----ccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhhCCCCCEEEEeccc
Q 046637 159 SGNLEYESLLAIGKLR-----EVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPTYLWCVPM 233 (301)
Q Consensus 159 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~ 233 (301)
.....|++++...... ........+++++|+|||||||+||||+++|.+++.........+++.++|++++..|+
T Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~IlyTSGTTG~PKgVv~sh~~~l~~~~~~~~~~~l~~~d~~~~~~~l 406 (728)
T PLN03052 327 EGDMSWDDFLARANGLRRPDEYKAVEQPVEAFTNILFSSGTTGEPKAIPWTQLTPLRAAADAWAHLDIRKGDIVCWPTNL 406 (728)
T ss_pred cCCccHHHHHhccccccccccccccccCCCCcEEEEecCCCCCCCceEEECchHHHHHHHHHHHhcCCCCCcEEEECCCc
Confidence 1235677765442111 11112356899999999999999999999999987776665556788899999999999
Q ss_pred hhhhhhHHHHHHHHhCCeEEeeCC-CCHHHHHHHHHhcCcceecCChHHHHHHHcCCCCccccccC
Q 046637 234 FHCNGWCLTWAVAAQGGTNVCQRT-VNAKEIFDNITRHKVTHFGGAPTVLNMIANAPPVFENRFRG 298 (301)
Q Consensus 234 ~h~~g~~~~~~~l~~g~~~v~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~ 298 (301)
.|+.|...++.+|..|+++++.++ +++..+++.++++++|++.++|++++.|.+.......++++
T Consensus 407 ~w~~g~~~v~~~L~~Gat~vl~~g~p~~~~~~~~i~~~~vT~l~~~Pt~l~~l~~~~~~~~~dlss 472 (728)
T PLN03052 407 GWMMGPWLVYASLLNGATLALYNGSPLGRGFAKFVQDAKVTMLGTVPSIVKTWKNTNCMAGLDWSS 472 (728)
T ss_pred HHHhHHHHHHHHHHhCCEEEEeCCCCCCChHHHHHHHHCCCEEEECHHHHHHHHhcCCcccCChhh
Confidence 999998777899999999999874 56778999999999999999999999999876555566654
|
|
| >PLN02654 acetate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-37 Score=291.68 Aligned_cols=274 Identities=18% Similarity=0.204 Sum_probs=206.9
Q ss_pred HHHHHHHhh-hcCCccEEEEC------CeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHhhhccc
Q 046637 17 ISFLERSAV-VYRDRPSVVYG------DVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAGA 89 (301)
Q Consensus 17 ~~~l~~~~~-~~~~~~al~~~------~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~ 89 (301)
.+++.+.++ .+|+++|+++. .+++||+||.+++.++|..|++.|+++||+|+++++|++++++++|||+++|+
T Consensus 91 ~~~l~~~~~~~~~~~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GdrV~i~~pn~~e~v~a~lA~~~~Ga 170 (666)
T PLN02654 91 YNCLDRNVEAGNGDKIAIYWEGNEPGFDASLTYSELLDRVCQLANYLKDVGVKKGDAVVIYLPMLMELPIAMLACARIGA 170 (666)
T ss_pred HHHHHHhhccCCCCCEEEEEEcCCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCC
Confidence 467777765 48999999974 26899999999999999999999999999999999999999999999999999
Q ss_pred eeeecCCCCCHHHHHHHHHhcCceEEEEcCCchhh---------HHHHHHHhccccCCCCceEEccCCCCC--CcccccC
Q 046637 90 VLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPI---------AQGAFEILSKTSAKLPLLVLVPECGEP--VSTVASS 158 (301)
Q Consensus 90 ~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~---------~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~~~~~ 158 (301)
+++|+++.++.+++..++++++++++|+++..... +.+..............++..+..... .......
T Consensus 171 v~vpv~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (666)
T PLN02654 171 VHSVVFAGFSAESLAQRIVDCKPKVVITCNAVKRGPKTINLKDIVDAALDESAKNGVSVGICLTYENQLAMKREDTKWQE 250 (666)
T ss_pred EEEecCCCCCHHHHHHHHHhcCceEEEEcCccccCCcccchHHHHHHHHHhccccCCCccEEEEeccccccccccccccc
Confidence 99999999999999999999999999998764321 111111111000011222222221100 0000000
Q ss_pred CCCccHHHHHhhccccccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHH-HHHHHHHhhCCCCCEEEEeccchhhh
Q 046637 159 SGNLEYESLLAIGKLREVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLN-SLAAALFNEMGLMPTYLWCVPMFHCN 237 (301)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~-~~~~~~~~~~~~~~~~l~~~p~~h~~ 237 (301)
.....|+++..............++++++|+|||||||.||||+++|.+++.. .......+++.++|++++..|++|+.
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ilyTSGTTG~PKgVv~sh~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 330 (666)
T PLN02654 251 GRDVWWQDVVPNYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVYTATTFKYAFDYKPTDVYWCTADCGWIT 330 (666)
T ss_pred CCcccHHHHhhcCCCCCCceecCCCCceEEEecCCCCCCCceEEecccHHHHHHHHHHHHhcCCCCCcEEEEcCCchhhh
Confidence 01123455443322111122356799999999999999999999999997643 34455667889999999999999999
Q ss_pred hhHH-HHHHHHhCCeEEeeCC----CCHHHHHHHHHhcCcceecCChHHHHHHHcCCC
Q 046637 238 GWCL-TWAVAAQGGTNVCQRT----VNAKEIFDNITRHKVTHFGGAPTVLNMIANAPP 290 (301)
Q Consensus 238 g~~~-~~~~l~~g~~~v~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~ 290 (301)
|... ++.+|..|+++++.++ +++..+++.|+++++|+++++|++++.|++...
T Consensus 331 g~~~~~~~~L~~G~tvvl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~ 388 (666)
T PLN02654 331 GHSYVTYGPMLNGATVLVFEGAPNYPDSGRCWDIVDKYKVTIFYTAPTLVRSLMRDGD 388 (666)
T ss_pred hhHHHHHHHHHcCceEEEECCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhhCc
Confidence 9764 6888999999999863 589999999999999999999999999998754
|
|
| >PLN02430 long-chain-fatty-acid-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-38 Score=293.15 Aligned_cols=271 Identities=20% Similarity=0.269 Sum_probs=213.4
Q ss_pred CCCCHHHHHHHHhhhcCCccEEEEC----C-----eeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHH
Q 046637 12 VPLTPISFLERSAVVYRDRPSVVYG----D-----VQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHF 82 (301)
Q Consensus 12 ~~~~~~~~l~~~~~~~~~~~al~~~----~-----~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~l 82 (301)
...+++++|++.++++|+++|+.+. + +++||+|+.+++.++|.+|.+.|+++||+|+|+++|+++|+++++
T Consensus 40 ~~~t~~~~~~~~~~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~ew~~~~l 119 (660)
T PLN02430 40 DITTAWDIFSKSVEKYPDNKMLGWRRIVDGKVGPYMWKTYKEVYEEVLQIGSALRASGAEPGSRVGIYGSNCPQWIVAME 119 (660)
T ss_pred CCCCHHHHHHHHHHhCCCCceEEEEecCCCCCCCcEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHH
Confidence 4568999999999999999999752 1 357999999999999999999999999999999999999999999
Q ss_pred HhhhccceeeecCCCCCHHHHHHHHHhcCceEEEEcCCchh-hHHHHHHHhccccCCCCceEEccCCCCCCccc--ccCC
Q 046637 83 GVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLP-IAQGAFEILSKTSAKLPLLVLVPECGEPVSTV--ASSS 159 (301)
Q Consensus 83 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~--~~~~ 159 (301)
||+++|++++|+++.++.+++.+++++++++++|++..... .+.......+ .++.++.++......... ....
T Consensus 120 A~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~~~~~~~~~~~~~~----~l~~ii~~~~~~~~~~~~~~~~~~ 195 (660)
T PLN02430 120 ACAAHSLICVPLYDTLGPGAVDYIVDHAEIDFVFVQDKKIKELLEPDCKSAK----RLKAIVSFTSVTEEESDKASQIGV 195 (660)
T ss_pred HHHHcCCeEEEeccCCCHHHHHHHHhccCCCEEEECHHHHHHHHhhhcccCC----CceEEEEECCCChHHhhhhhcCCc
Confidence 99999999999999999999999999999999999865322 2111111111 456677765422110000 0011
Q ss_pred CCccHHHHHhhccccc-cCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHh-----hCCCCCEEEEeccc
Q 046637 160 GNLEYESLLAIGKLRE-VRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFN-----EMGLMPTYLWCVPM 233 (301)
Q Consensus 160 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~-----~~~~~~~~l~~~p~ 233 (301)
....|+++...+...+ ......++++++|+|||||||.||||++||.++..++....... .+..+|++++.+|+
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~d~a~iiyTSGTTG~PKGV~lth~~~~~~~~~~~~~~~~~~~~~~~~d~~ls~lPl 275 (660)
T PLN02430 196 KTYSWIDFLHMGKENPSETNPPKPLDICTIMYTSGTSGDPKGVVLTHEAVATFVRGVDLFMEQFEDKMTHDDVYLSFLPL 275 (660)
T ss_pred EEEEHHHHHHhhccCCCCCCCcCcCceEEEEECCCCCCCCCEEEeecHHHHHHHHHHHhhccccccCCCCCCEEEEeCcH
Confidence 1246777665443221 12234578999999999999999999999999988776543321 46788999999999
Q ss_pred hhhhhhHHHHHHHHhCCeEEeeCCCCHHHHHHHHHhcCcceecCChHHHHHHHc
Q 046637 234 FHCNGWCLTWAVAAQGGTNVCQRTVNAKEIFDNITRHKVTHFGGAPTVLNMIAN 287 (301)
Q Consensus 234 ~h~~g~~~~~~~l~~g~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~ 287 (301)
+|.+++...+.++..|+++++... ++..+++.+++++||++.++|.+++.+.+
T Consensus 276 ~H~~~~~~~~~~l~~G~~i~~~~~-~~~~l~~~l~~~~pt~~~~vP~~~~~l~~ 328 (660)
T PLN02430 276 AHILDRMIEEYFFRKGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFERIHE 328 (660)
T ss_pred HHHHHHHHHHHHHHcCCEEEEeCC-ChhhHHHHHHHhCCcEEEecHHHHHHHHH
Confidence 999998876667889999888754 78899999999999999999999998875
|
|
| >PRK06155 crotonobetaine/carnitine-CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-37 Score=285.25 Aligned_cols=278 Identities=25% Similarity=0.309 Sum_probs=228.0
Q ss_pred CCCCCCCCHHHHHHHHhhhcCCccEEEECCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHhhhc
Q 046637 8 SANYVPLTPISFLERSAVVYRDRPSVVYGDVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMA 87 (301)
Q Consensus 8 ~~~~~~~~~~~~l~~~~~~~~~~~al~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~ 87 (301)
..|..++++.++|++.++.+||++|+++.++.+||+||.+.+.++|..|.+.|+++|++|+++++|++++++++|||+++
T Consensus 15 ~~~~~~~~l~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~v~~la~~L~~~gi~~g~~V~v~~~n~~~~~~~~lA~~~~ 94 (542)
T PRK06155 15 PLPPSERTLPAMLARQAERYPDRPLLVFGGTRWTYAEAARAAAAAAHALAAAGVKRGDRVALMCGNRIEFLDVFLGCAWL 94 (542)
T ss_pred cCCccccCHHHHHHHHHHHCCCCeEEEeCCccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHHHHHHh
Confidence 34557889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeeecCCCCCHHHHHHHHHhcCceEEEEcCCchhhHHHHHHHhccccCCCCceEEccCCCCCCcccccCCCCccHHHH
Q 046637 88 GAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVASSSGNLEYESL 167 (301)
Q Consensus 88 G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (301)
|++++|+++.++.+++..+++.+++++++++......+.+...... ..+.++.++..... .....+ ...++
T Consensus 95 G~~~vpl~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~----~~~~~~-~~~~~ 165 (542)
T PRK06155 95 GAIAVPINTALRGPQLEHILRNSGARLLVVEAALLAALEAADPGDL----PLPAVWLLDAPASV----SVPAGW-STAPL 165 (542)
T ss_pred CCEEEEeccccCHHHHHHHHHhcCceEEEEChhhHHHHHHhccccc----CcceEEEecCcccc----cccccc-chhhh
Confidence 9999999999999999999999999999998876655444322211 34555555533210 000000 00111
Q ss_pred HhhccccccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhhCCCCCEEEEeccchhhhhhHHHHHHHH
Q 046637 168 LAIGKLREVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPTYLWCVPMFHCNGWCLTWAVAA 247 (301)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~h~~g~~~~~~~l~ 247 (301)
.. ...........++++++|+|||||||.||+|+++|.++..........+++.+++++++..|++|.+|+..++.++.
T Consensus 166 ~~-~~~~~~~~~~~~~~~a~il~TSGTTG~PK~V~~t~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~~~~~~~~~l~ 244 (542)
T PRK06155 166 PP-LDAPAPAAAVQPGDTAAILYTSGTTGPSKGVCCPHAQFYWWGRNSAEDLEIGADDVLYTTLPLFHTNALNAFFQALL 244 (542)
T ss_pred cc-cCCCCCCCCCCCCCeEEEEECCCCCCCCcEEEEEHHHHHHHHHHHHHhcCCCCCCEEEEecCHHHHHHHHHHHHHHH
Confidence 11 11111122346789999999999999999999999999888777777788899999999999999999988899999
Q ss_pred hCCeEEeeCCCCHHHHHHHHHhcCcceecCChHHHHHHHcCCCCcccc
Q 046637 248 QGGTNVCQRTVNAKEIFDNITRHKVTHFGGAPTVLNMIANAPPVFENR 295 (301)
Q Consensus 248 ~g~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~ 295 (301)
.|+++++.+.+++..+++.++++++|++.++|+++..|.+.+.....+
T Consensus 245 ~G~~~~~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~~ 292 (542)
T PRK06155 245 AGATYVLEPRFSASGFWPAVRRHGATVTYLLGAMVSILLSQPARESDR 292 (542)
T ss_pred cCceEEeeCCCCHHHHHHHHHHhCCcEEEchHHHHHHHHcCcCccccc
Confidence 999999999999999999999999999999999999999876554433
|
|
| >COG1021 EntE Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-39 Score=263.35 Aligned_cols=277 Identities=25% Similarity=0.298 Sum_probs=242.7
Q ss_pred CCCCCCHHHHHHHHhhhcCCccEEEECCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHhhhccc
Q 046637 10 NYVPLTPISFLERSAVVYRDRPSVVYGDVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAGA 89 (301)
Q Consensus 10 ~~~~~~~~~~l~~~~~~~~~~~al~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~ 89 (301)
-|.+.++.+++.++++++||++|++++++.+||+|+.++++++|.+|.++|+++||+|.+..||..+|++.+||++++|+
T Consensus 24 yW~d~~l~d~L~~~A~~~pdriAv~d~~~~~sY~eLdqr~d~LAa~l~~lGi~~Gd~vlvQLpN~~ef~~~~FALlrlGv 103 (542)
T COG1021 24 YWQDRTLTDILTDHAARYPDRIAVIDGERRLSYAELDQRADRLAAGLRRLGIKPGDTVLVQLPNVAEFYITFFALLRLGV 103 (542)
T ss_pred cccCCcHHHHHHHHHhhcCCceEEecCcccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCchHHHHHHHHHHHHcCc
Confidence 58899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeecCCCCCHHHHHHHHHhcCceEEEEcCCch-----hhHHHHHHHhccccCCCCceEEccCCCCCCcccccCCCCccH
Q 046637 90 VLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLL-----PIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVASSSGNLEY 164 (301)
Q Consensus 90 ~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 164 (301)
.+|.--|.....|+.++...+.++.+|.+.... .+..+.....+ .++.+++.++.+... ..+
T Consensus 104 ~PVlALpsHr~~Ei~~f~~~~e~~~~i~~~~~~gFd~~~~ar~~~a~~~----tlr~v~v~ge~~~~~---------~~~ 170 (542)
T COG1021 104 APVLALPSHRASELGAFASQIEAALLIVARQHSGFDYRPFARELVAKHP----TLRHVIVAGEAEHPS---------VLE 170 (542)
T ss_pred chhhccchhhHHHHHHHHHhhcchheeechhhcccCcHHHHHHHHhhCC----cceEEEEccCCCCcc---------hhh
Confidence 999999999999999999999999999987533 34455555544 788888875443210 122
Q ss_pred HHHHhhccccccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhhCCCCCEEEEeccchhhhhhHH--H
Q 046637 165 ESLLAIGKLREVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPTYLWCVPMFHCNGWCL--T 242 (301)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~h~~g~~~--~ 242 (301)
..+-............++++++++..+.||||.||.|..||....-+.++..+.+.+++.+++++.+|..|-|.+++ .
T Consensus 171 ~~~~~~a~~~~~a~~~~~~~vA~fqLSGGTTGtPKLIPRtH~DY~Ysv~aSaEiC~~~~~tvyL~~LP~AHNfplssPG~ 250 (542)
T COG1021 171 AALCHPAGLFTPAPPADAGEVAFFQLSGGTTGTPKLIPRTHNDYYYSVRASAEICGFDQQTVYLCALPAAHNFPLSSPGA 250 (542)
T ss_pred hhhhCccccCCcCCCCCCCceEEEEecCCCCCCCccccccccceeeeeeehhhhhCcCccceEEEecccccCCCCCCcch
Confidence 22222222223334577788999999999999999999999999889999999999999999999999999999996 7
Q ss_pred HHHHHhCCeEEeeCCCCHHHHHHHHHhcCcceecCChHHHHHHHcCCCCccccccCC
Q 046637 243 WAVAAQGGTNVCQRTVNAKEIFDNITRHKVTHFGGAPTVLNMIANAPPVFENRFRGR 299 (301)
Q Consensus 243 ~~~l~~g~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~~ 299 (301)
+..+..||++|+.++.+|...+..|++|++|+..++|.+...+++..+..+.+|+|.
T Consensus 251 LGv~~agG~VVla~~psp~~~F~lIerh~Vt~tALVPpla~LWlqa~e~~~~~LsSL 307 (542)
T COG1021 251 LGVFLAGGTVVLAPDPSPELCFPLIERHGVTVTALVPPLASLWLQAAEWERADLSSL 307 (542)
T ss_pred hheeeeccEEEECCCCCHHHHHHHHHHhccceEEeccHHHHHHHHhhhcccCCchhe
Confidence 888999999999999999999999999999999999999999999999999999875
|
|
| >PRK13382 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-37 Score=283.60 Aligned_cols=262 Identities=23% Similarity=0.245 Sum_probs=219.8
Q ss_pred CCCHHHHHHHHhhhcCCccEEEECCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHhhhccceee
Q 046637 13 PLTPISFLERSAVVYRDRPSVVYGDVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAGAVLC 92 (301)
Q Consensus 13 ~~~~~~~l~~~~~~~~~~~al~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v 92 (301)
+.++.++|.+.++++||++|+++.++.+||+||.++++++|.+|.+.|+++|++|+++++|++++++++|||+++|++++
T Consensus 42 ~~~~~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~~A~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v 121 (537)
T PRK13382 42 GMGPTSGFAIAAQRCPDRPGLIDELGTLTWRELDERSDALAAALQALPIGEPRVVGIMCRNHRGFVEALLAANRIGADIL 121 (537)
T ss_pred cCCHHHHHHHHHHhCCCCeEEEeCCCeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCcHHHHHHHHHHHHcCcEEE
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCHHHHHHHHHhcCceEEEEcCCchhhHHHHHHHhccccCCCCceEEccCCCCCCcccccCCCCccHHHHHhhcc
Q 046637 93 TLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVASSSGNLEYESLLAIGK 172 (301)
Q Consensus 93 ~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (301)
|+++.++.+++.++++.++++++|++......+.......+ ....++..++.. ....++++.....
T Consensus 122 pl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~----------~~~~~~~~~~~~~ 187 (537)
T PRK13382 122 LLNTSFAGPALAEVVTREGVDTVIYDEEFSATVDRALADCP----QATRIVAWTDED----------HDLTVEVLIAAHA 187 (537)
T ss_pred ecCcccCHHHHHHHHHhcCCCEEEEchhhHHHHHHHHhhcc----ccceEEEecCCc----------ccccHHHHhhccC
Confidence 99999999999999999999999999776655444332211 122233332211 1133444433222
Q ss_pred ccccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhhCCCCCEEEEeccchhhhhhHHHHHHHHhCCeE
Q 046637 173 LREVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPTYLWCVPMFHCNGWCLTWAVAAQGGTN 252 (301)
Q Consensus 173 ~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~h~~g~~~~~~~l~~g~~~ 252 (301)
... ....+++.++++|||||||.||||+++|.++..+.......+.+..+++++...|++|.+|+...+.++..|+++
T Consensus 188 ~~~--~~~~~~~~~~il~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~g~~~ 265 (537)
T PRK13382 188 GQR--PEPTGRKGRVILLTSGTTGTPKGARRSGPGGIGTLKAILDRTPWRAEEPTVIVAPMFHAWGFSQLVLAASLACTI 265 (537)
T ss_pred cCC--CCCCCCCCeEEEECCCCCCCCCEEEeccchHHHHHHHHHHhhCCCCCCeEEEecChHhhhHHHHHHHHHhcCcEE
Confidence 111 123467899999999999999999999999888777777777788899999999999999998788889999999
Q ss_pred EeeCCCCHHHHHHHHHhcCcceecCChHHHHHHHcCCC
Q 046637 253 VCQRTVNAKEIFDNITRHKVTHFGGAPTVLNMIANAPP 290 (301)
Q Consensus 253 v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~ 290 (301)
++.+.+++..+++.++++++|++..+|++++.|++...
T Consensus 266 ~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~ 303 (537)
T PRK13382 266 VTRRRFDPEATLDLIDRHRATGLAVVPVMFDRIMDLPA 303 (537)
T ss_pred EECCCcCHHHHHHHHHHhCCEEEEehHHHHHHHHcCCc
Confidence 99889999999999999999999999999999987653
|
|
| >PRK07529 AMP-binding domain protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-37 Score=286.50 Aligned_cols=275 Identities=25% Similarity=0.307 Sum_probs=219.8
Q ss_pred CCCCCHHHHHHHHhhhcCCccEEEE--------CCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHH
Q 046637 11 YVPLTPISFLERSAVVYRDRPSVVY--------GDVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHF 82 (301)
Q Consensus 11 ~~~~~~~~~l~~~~~~~~~~~al~~--------~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~l 82 (301)
..+.+++++|.+.++++|+++|+++ ..+++||+||.+++.++|..|.++|+++||+|+++++|++++++++|
T Consensus 22 ~~~~t~~~~l~~~a~~~p~~~Al~~~~~~~~~~~~~~~Ty~eL~~~v~~~A~~L~~~Gi~~gd~V~i~~~n~~e~~~~~l 101 (632)
T PRK07529 22 DLPASTYELLSRAAARHPDAPALSFLLDADPLDRPETWTYAELLADVTRTANLLHSLGVGPGDVVAFLLPNLPETHFALW 101 (632)
T ss_pred cCCCCHHHHHHHHHHHCCCCceEEeecccCCCCCCceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHH
Confidence 4567899999999999999999987 24699999999999999999999999999999999999999999999
Q ss_pred HhhhccceeeecCCCCCHHHHHHHHHhcCceEEEEcCCch-----hhHHHHHHHhccccCCCCceEEccCCCCCCccc--
Q 046637 83 GVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLL-----PIAQGAFEILSKTSAKLPLLVLVPECGEPVSTV-- 155 (301)
Q Consensus 83 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-- 155 (301)
||+++| +++|++|.++.+++.++++.++++++|++.... ..+.......+ .++.++.++.........
T Consensus 102 A~~~~G-i~~pi~~~~~~~~i~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~~~~ 176 (632)
T PRK07529 102 GGEAAG-IANPINPLLEPEQIAELLRAAGAKVLVTLGPFPGTDIWQKVAEVLAALP----ELRTVVEVDLARYLPGPKRL 176 (632)
T ss_pred HHHHhC-EEEeCCCcCCHHHHHHHHHhcCCcEEEEeCCCCCchHHHHHHHHHhcCC----cceeEEEecCcccccccccc
Confidence 999999 579999999999999999999999999986543 22222222222 455666555332100000
Q ss_pred -------ccCCCCccHHHHHhhcccc--ccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhhCCCCCE
Q 046637 156 -------ASSSGNLEYESLLAIGKLR--EVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPT 226 (301)
Q Consensus 156 -------~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~ 226 (301)
....+...|.+.+...... .......++++++|+|||||||.||+|.+||.+++.+.......+.+.++++
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~d~ 256 (632)
T PRK07529 177 AVPLIRRKAHARILDFDAELARQPGDRLFSGRPIGPDDVAAYFHTGGTTGMPKLAQHTHGNEVANAWLGALLLGLGPGDT 256 (632)
T ss_pred cccccccccccccCCHHHHHhcCCCccccccCCCCcCceEEEEECCCccCcCCEEEEcHHHHHHHHHHHHHhcCCCCCCE
Confidence 0112334566655443322 1122346789999999999999999999999999988877777778889999
Q ss_pred EEEeccchhhhhhH-HHHHHHHhCCeEEeeCC--C-C---HHHHHHHHHhcCcceecCChHHHHHHHcCCC
Q 046637 227 YLWCVPMFHCNGWC-LTWAVAAQGGTNVCQRT--V-N---AKEIFDNITRHKVTHFGGAPTVLNMIANAPP 290 (301)
Q Consensus 227 ~l~~~p~~h~~g~~-~~~~~l~~g~~~v~~~~--~-~---~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~ 290 (301)
+++.+|++|.+|+. .++.++..|+++++.+. + + ..++++.++++++|++.++|++++.|++.+.
T Consensus 257 ~l~~~pl~h~~~~~~~~~~~l~~G~~vv~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~ 327 (632)
T PRK07529 257 VFCGLPLFHVNALLVTGLAPLARGAHVVLATPQGYRGPGVIANFWKIVERYRINFLSGVPTVYAALLQVPV 327 (632)
T ss_pred EEEecCchhhhHHHHHHHHHHHCCCEEEecCccccCcchHHHHHHHHHHHhCCeEEEeHHHHHHHHHhCcc
Confidence 99999999999976 47888999999998753 2 1 3688999999999999999999999998764
|
|
| >PRK05605 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-37 Score=284.18 Aligned_cols=287 Identities=23% Similarity=0.314 Sum_probs=225.0
Q ss_pred cCCCCCCCCHHHHHHHHhhhcCCccEEEECCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHhhh
Q 046637 7 CSANYVPLTPISFLERSAVVYRDRPSVVYGDVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPM 86 (301)
Q Consensus 7 ~~~~~~~~~~~~~l~~~~~~~~~~~al~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~ 86 (301)
.+.+...+++.++|++.++++|+++|+++.++.+||+||.+.++++|..|.+.|+++||+|+++++|++++++++|||++
T Consensus 25 ~~~~~~~~~l~~~~~~~~~~~p~~~a~~~~~~~~Ty~ql~~~~~~~A~~L~~~gi~~gd~V~l~~~n~~~~~~~~lA~~~ 104 (573)
T PRK05605 25 HDLDYGDTTLVDLYDNAVARFGDRPALDFFGATTTYAELGKQVRRAAAGLRALGVRPGDRVAIVLPNCPQHIVAFYAVLR 104 (573)
T ss_pred cccCCCcCCHHHHHHHHHHHCCCCeEEEeCCCcccHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHh
Confidence 34455567999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccceeeecCCCCCHHHHHHHHHhcCceEEEEcCCchhhHHHHHHHhccccCCCCceEEccCCCCCC--------------
Q 046637 87 AGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGEPV-------------- 152 (301)
Q Consensus 87 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-------------- 152 (301)
+|++++|++|.++.+++.+++++++++++|+++.......+..... ....++.++......
T Consensus 105 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~-----~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 179 (573)
T PRK05605 105 LGAVVVEHNPLYTAHELEHPFEDHGARVAIVWDKVAPTVERLRRTT-----PLETIVSVNMIAAMPLLQRLALRLPIPAL 179 (573)
T ss_pred cCcEEeecCcCCCHHHHHHHHhccCCcEEEechhhHHHHHhhhhcc-----ccceeEeeecccccccccccccccccccc
Confidence 9999999999999999999999999999999877665544433221 233343332111000
Q ss_pred -----cccccCCCCccHHHHHhhcccc----ccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhh-C-
Q 046637 153 -----STVASSSGNLEYESLLAIGKLR----EVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNE-M- 221 (301)
Q Consensus 153 -----~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~-~- 221 (301)
.......+...|.++....... ........+++++++|||||||.||+|.+||.++..+.......+. +
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~ 259 (573)
T PRK05605 180 RKARAALTGPAPGTVPWETLVDAAIGGDGSDVSHPRPTPDDVALILYTSGTTGKPKGAQLTHRNLFANAAQGKAWVPGLG 259 (573)
T ss_pred cccccccccCCCcceeHHHHhhccccccccccCCCCCCCCCEEEEEcCCCCCCCCcEEEEecHHHHHHHHHHHhhccccC
Confidence 0000112334566554432211 1122355789999999999999999999999999877664433322 2
Q ss_pred CCCCEEEEeccchhhhhhHH-HHHHHHhCCeEEeeCCCCHHHHHHHHHhcCcceecCChHHHHHHHcCCCCccccccC
Q 046637 222 GLMPTYLWCVPMFHCNGWCL-TWAVAAQGGTNVCQRTVNAKEIFDNITRHKVTHFGGAPTVLNMIANAPPVFENRFRG 298 (301)
Q Consensus 222 ~~~~~~l~~~p~~h~~g~~~-~~~~l~~g~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~ 298 (301)
..++++++..|++|.+|+.. .+.++..|+++++.+.+++..+++.++++++|++.++|++++.|++.+.....++++
T Consensus 260 ~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~ 337 (573)
T PRK05605 260 DGPERVLAALPMFHAYGLTLCLTLAVSIGGELVLLPAPDIDLILDAMKKHPPTWLPGVPPLYEKIAEAAEERGVDLSG 337 (573)
T ss_pred CCCcEEEEecChHHHHHHHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHhCCEEEEchHHHHHHHHhCccccCCCchh
Confidence 34689999999999999765 566788999999998899999999999999999999999999999876655444443
|
|
| >PRK06164 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-37 Score=283.34 Aligned_cols=275 Identities=24% Similarity=0.217 Sum_probs=219.8
Q ss_pred CCCCCCHHHHHHHHhhhcCCccEEEECCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHhhhccc
Q 046637 10 NYVPLTPISFLERSAVVYRDRPSVVYGDVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAGA 89 (301)
Q Consensus 10 ~~~~~~~~~~l~~~~~~~~~~~al~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~ 89 (301)
.-...++.++|.+.++.+|+++|+++.++.+||+||.+.+.++|..|.+.|+++||+|+++++|++++++++|||+++|+
T Consensus 6 ~~~~~~l~~~l~~~a~~~p~~~a~~~~~~~~Ty~~L~~~~~~~a~~L~~~g~~~g~~V~i~~~n~~~~~~~~la~~~~G~ 85 (540)
T PRK06164 6 APRADTLASLLDAHARARPDAVALIDEDRPLSRAELRALVDRLAAWLAAQGVRRGDRVAVWLPNCIEWVVLFLACARLGA 85 (540)
T ss_pred ccCCCCHHHHHHHHHHhCCCCeEEecCCCcccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcHHHHHHHHHHHHhCc
Confidence 34456899999999999999999999889999999999999999999999999999999999999999999999999999
Q ss_pred eeeecCCCCCHHHHHHHHHhcCceEEEEcCCchhh-HHHHHHHhc-cccCCCCceEEccCCCCCCcccccCCCCccHHHH
Q 046637 90 VLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPI-AQGAFEILS-KTSAKLPLLVLVPECGEPVSTVASSSGNLEYESL 167 (301)
Q Consensus 90 ~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~-~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (301)
+++|+++..+.+++.++++.+++++++++++.... +.+...... .....++.++.++.......... ...+.+.
T Consensus 86 ~~v~l~~~~~~~~l~~~i~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 161 (540)
T PRK06164 86 TVIAVNTRYRSHEVAHILGRGRARWLVVWPGFKGIDFAAILAAVPPDALPPLRAIAVVDDAADATPAPA----PGARVQL 161 (540)
T ss_pred EEEecCCCCCcHHHHHHHHhcCccEEEEccccccccHHHHhhcccccccCCcceEEEeccCcccCCCCC----ccccccc
Confidence 99999999999999999999999999998765321 111111111 11113445555542111000000 0001111
Q ss_pred Hhhcccc----ccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhhCCCCCEEEEeccchhhhhhHHHH
Q 046637 168 LAIGKLR----EVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPTYLWCVPMFHCNGWCLTW 243 (301)
Q Consensus 168 ~~~~~~~----~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~h~~g~~~~~ 243 (301)
....... ........+++++++|||||||.||+|++||.++..+.......+++..++++++.+|++|.+|+..++
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~ 241 (540)
T PRK06164 162 FALPDPAPPAAAGERAADPDAGALLFTTSGTTSGPKLVLHRQATLLRHARAIARAYGYDPGAVLLAALPFCGVFGFSTLL 241 (540)
T ss_pred ccccccCCcccccccCCCCCceEEEEECCCCCCCCcEEEEehHHHHHHHHHHHHhcCCCCCCEEEEcCCchhHHHHHHHH
Confidence 1100000 001223468899999999999999999999999999888888888899999999999999999998889
Q ss_pred HHHHhCCeEEeeCCCCHHHHHHHHHhcCcceecCChHHHHHHHcC
Q 046637 244 AVAAQGGTNVCQRTVNAKEIFDNITRHKVTHFGGAPTVLNMIANA 288 (301)
Q Consensus 244 ~~l~~g~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~ 288 (301)
.++..|+++++.+.+++..+++.++++++|+++++|+++..|.+.
T Consensus 242 ~~l~~G~~~~~~~~~~~~~~~~~l~~~~~t~~~~~p~~l~~l~~~ 286 (540)
T PRK06164 242 GALAGGAPLVCEPVFDAARTARALRRHRVTHTFGNDEMLRRILDT 286 (540)
T ss_pred HHHhcCceEEecCCCCHHHHHHHHHHhCCeeecCCHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999887
|
|
| >PRK07786 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-37 Score=282.89 Aligned_cols=269 Identities=23% Similarity=0.291 Sum_probs=226.6
Q ss_pred CCCHHHHHHHHhhhcCCccEEEECCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHhhhccceee
Q 046637 13 PLTPISFLERSAVVYRDRPSVVYGDVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAGAVLC 92 (301)
Q Consensus 13 ~~~~~~~l~~~~~~~~~~~al~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v 92 (301)
.+|+.+.+++.++.+|+++|+.+.++.+||.||.+.++++|..|.+.|+++|++|+++++|++++++++|||+++|++++
T Consensus 16 ~~n~~~~~~~~a~~~~~~~a~~~~~~~~ty~~l~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~~~~~~~~a~~~~G~~~v 95 (542)
T PRK07786 16 RQNWVNQLARHALMQPDAPALRFLGNTTTWRELDDRVAALAGALSRRGVGFGDRVLILMLNRTEFVESVLAANMLGAIAV 95 (542)
T ss_pred ccCHHHHHHHHHHHCCCCeEEEeCCCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCeEEE
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCHHHHHHHHHhcCceEEEEcCCchhhHHHHHHHhccccCCCCceEEccCCCCCCcccccCCCCccHHHHHhhcc
Q 046637 93 TLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVASSSGNLEYESLLAIGK 172 (301)
Q Consensus 93 ~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (301)
|+++..+.+++..+++.+++++++++......+.......+ ..+.++..++... .+...++++.....
T Consensus 96 pl~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~--------~~~~~~~~~~~~~~ 163 (542)
T PRK07786 96 PVNFRLTPPEIAFLVSDCGAHVVVTEAALAPVATAVRDIVP----LLSTVVVAGGSSD--------DSVLGYEDLLAEAG 163 (542)
T ss_pred EcCccCCHHHHHHHHHhCCCcEEEEccchHHHHHHhhhccC----ccceEEEecCCCc--------ccccCHHHHhhccC
Confidence 99999999999999999999999999876655544433222 4455555543211 12245666554433
Q ss_pred ccccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhhC-CCCCEEEEeccchhhhhhHHHHHHHHhCCe
Q 046637 173 LREVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEM-GLMPTYLWCVPMFHCNGWCLTWAVAAQGGT 251 (301)
Q Consensus 173 ~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~-~~~~~~l~~~p~~h~~g~~~~~~~l~~g~~ 251 (301)
..........+++++++|||||||.||||.+||.++...+......+++ ..++++++..|++|.+|+..++.++..|++
T Consensus 164 ~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~l~~G~~ 243 (542)
T PRK07786 164 PAHAPVDIPNDSPALIMYTSGTTGRPKGAVLTHANLTGQAMTCLRTNGADINSDVGFVGVPLFHIAGIGSMLPGLLLGAP 243 (542)
T ss_pred CCCCCCCCCCCCeEEEEeCCCCCccchhhhhhHHHHHHHHHHHHHhcCCCCCCceEEEecchHHHHHHHHHHHHHHccCE
Confidence 3322234556789999999999999999999999999888777777766 577899999999999999888999999999
Q ss_pred EEeeC--CCCHHHHHHHHHhcCcceecCChHHHHHHHcCCCCcc
Q 046637 252 NVCQR--TVNAKEIFDNITRHKVTHFGGAPTVLNMIANAPPVFE 293 (301)
Q Consensus 252 ~v~~~--~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~ 293 (301)
+++.+ .++|..+++.++++++|+++++|++++.++.......
T Consensus 244 ~v~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~ 287 (542)
T PRK07786 244 TVIYPLGAFDPGQLLDVLEAEKVTGIFLVPAQWQAVCAEQQARP 287 (542)
T ss_pred EEEccCCCcCHHHHHHHHHHcCCeEEEehHHHHHHHHhCcccCc
Confidence 99875 6799999999999999999999999999987655433
|
|
| >TIGR02316 propion_prpE propionate--CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-37 Score=286.23 Aligned_cols=269 Identities=18% Similarity=0.202 Sum_probs=210.5
Q ss_pred HHHHHHHhhhcCCccEEEEC------CeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHhhhccce
Q 046637 17 ISFLERSAVVYRDRPSVVYG------DVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAGAV 90 (301)
Q Consensus 17 ~~~l~~~~~~~~~~~al~~~------~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~ 90 (301)
.++|.+.++.+|+++|+++. ++++||+||.+++.++|+.|+++|+++||+|+++++|+++++++++||+++|++
T Consensus 55 ~~~l~~~~~~~p~~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~n~~e~v~~~lA~~~~Gav 134 (628)
T TIGR02316 55 HNALDRHLDERGEQLALVTVSSETGQERTLTYRQLHREVNVFASALRALGVGRGDRVLIYMPMIAEAVFAMLACARIGAI 134 (628)
T ss_pred HHHHHHHhCcCCCCeEEEEEcCCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHhCCE
Confidence 46788888889999999972 368999999999999999999999999999999999999999999999999999
Q ss_pred eeecCCCCCHHHHHHHHHhcCceEEEEcCCch---------hhHHHHHHHhccccCCCCceEEccCCCCCCcccccCCCC
Q 046637 91 LCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLL---------PIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVASSSGN 161 (301)
Q Consensus 91 ~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~---------~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 161 (301)
++|+++.++.+++.+++++++++++|+++... ..+.+...... .....+++++...... .......
T Consensus 135 ~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~vi~~~~~~~~~--~~~~~~~ 209 (628)
T TIGR02316 135 HSVVFGGFASHSLALRIDDATPKLIVSADAGMRGGKVIPYKPLLDAAIAEAQ---HPPPHVLLVDRGLAPM--RLIPGRD 209 (628)
T ss_pred EEecCCCCCHHHHHHHHHhcCceEEEECCccccCCcccccHHHHHHHHHhcC---CCCCEEEEEeCCCCCc--CcccCcc
Confidence 99999999999999999999999999986432 11222222111 1345566665421110 0000112
Q ss_pred ccHHHHHhhcccc-ccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHH-HHHHHHHhhCCCCCEEEEeccchhhhhh
Q 046637 162 LEYESLLAIGKLR-EVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLN-SLAAALFNEMGLMPTYLWCVPMFHCNGW 239 (301)
Q Consensus 162 ~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~-~~~~~~~~~~~~~~~~l~~~p~~h~~g~ 239 (301)
..+.++....... .......++++++|+|||||||.||||+++|.+++.+ .......+++.++|++++..|++|+.|+
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~g~ 289 (628)
T TIGR02316 210 VDYAALRTQHEDAQVPVEWLESNEPSYILYTSGTTGKPKGVQRDVGGYAVALALSMWAIFGIRAGQVMFSASDVGWVVGH 289 (628)
T ss_pred ccHHHHhhccccCCCCceecCCCCcEEEEECCCCCCCCceEEECCcHHHHHHHHHHHHhcCCCCCcEEEEcCCCCeeehh
Confidence 3455554432211 1112246789999999999999999999999997644 3345556788899999999999999986
Q ss_pred H-HHHHHHHhCCeEEeeCC----CCHHHHHHHHHhcCcceecCChHHHHHHHcCCC
Q 046637 240 C-LTWAVAAQGGTNVCQRT----VNAKEIFDNITRHKVTHFGGAPTVLNMIANAPP 290 (301)
Q Consensus 240 ~-~~~~~l~~g~~~v~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~ 290 (301)
. .++.+++.|+++++.++ +++..+++.++++++|+++++|++++.|.+.+.
T Consensus 290 ~~~~~~~L~~G~~~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~ 345 (628)
T TIGR02316 290 SYIVYAPLLAGAATVLYEGLPTNPDPGVWWSIVERYGVRTMFSAPTAIRVLKKQDA 345 (628)
T ss_pred hHHHHHHHhccceEEEeCCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCC
Confidence 5 47888999999999863 578999999999999999999999999987653
|
This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate. |
| >TIGR03098 ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosortase system type 1 associated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-37 Score=279.35 Aligned_cols=266 Identities=24% Similarity=0.329 Sum_probs=224.8
Q ss_pred CHHHHHHHHhhhcCCccEEEECCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHhhhccceeeec
Q 046637 15 TPISFLERSAVVYRDRPSVVYGDVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAGAVLCTL 94 (301)
Q Consensus 15 ~~~~~l~~~~~~~~~~~al~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l 94 (301)
++.++|...++++|+++++.+.++.+||+||.+.+.+++..|.+.|+++|++|+++++|++++++++|||+++|++++|+
T Consensus 1 ~~~~~~~~~~~~~p~~~a~~~~~~~~ty~~l~~~v~~~a~~l~~~g~~~~~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l 80 (515)
T TIGR03098 1 LLHHLLEDAAARLPDATALVHHDRTLTYAALSERVLALASGLRGLGLARGERVAIYLDKRLETVTAMFGAALAGGVFVPI 80 (515)
T ss_pred CHHHHHHHHHHHCCCCeEEEECCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHhcCEEEEeC
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCceEEEEcCCchhhHHHHHHHhccccCCCCceEEccCCCCCCcccccCCCCccHHHHHhhcccc
Q 046637 95 NTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVASSSGNLEYESLLAIGKLR 174 (301)
Q Consensus 95 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (301)
++..+.+++..+++.+++++++++......+.+.....+ ++..++.+++...... .......|+++.......
T Consensus 81 ~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 153 (515)
T TIGR03098 81 NPLLKAEQVAHILADCNVRLLVTSSERLDLLHPALPGCH----DLRTLILVGEPAHASE---GGGESPSWPKLLALGDAD 153 (515)
T ss_pred CCCCCHHHHHHHHHcCCCeEEEEccchhhhhHhhhhccc----ccceEEEecCcccccC---CccccccHHHhhcccccc
Confidence 999999999999999999999998776655544433332 4455666554322110 111223455554432221
Q ss_pred ccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhhCCCCCEEEEeccchhhhhhHHHHHHHHhCCeEEe
Q 046637 175 EVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPTYLWCVPMFHCNGWCLTWAVAAQGGTNVC 254 (301)
Q Consensus 175 ~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~h~~g~~~~~~~l~~g~~~v~ 254 (301)
.......+++++|+|||||||.||+|.+||.++..++......+.+..+|++++.+|++|.+|+..++.++..|+++++
T Consensus 154 -~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~ 232 (515)
T TIGR03098 154 -PPHPVIDSDMAAILYTSGSTGRPKGVVLSHRNLVAGAQSVATYLENRPDDRLLAVLPLSFDYGFNQLTTAFYVGATVVL 232 (515)
T ss_pred -ccCCCCcCCeEEEEECCCCCCCCceEEEecHHHHHHHHHHHHHhCCCcccEEEEECchhhHhHHHHHHHHHHcCCEEEE
Confidence 1223456789999999999999999999999999888887778888899999999999999999888999999999999
Q ss_pred eCCCCHHHHHHHHHhcCcceecCChHHHHHHHcC
Q 046637 255 QRTVNAKEIFDNITRHKVTHFGGAPTVLNMIANA 288 (301)
Q Consensus 255 ~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~ 288 (301)
.+.+++..+++.++++++|++.++|+++..|.+.
T Consensus 233 ~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~ 266 (515)
T TIGR03098 233 HDYLLPRDVLKALEKHGITGLAAVPPLWAQLAQL 266 (515)
T ss_pred cCCCCHHHHHHHHHHcCCceEecChHHHHHHHhc
Confidence 9889999999999999999999999999999875
|
This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present. |
| >PLN02246 4-coumarate--CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-37 Score=280.52 Aligned_cols=270 Identities=26% Similarity=0.302 Sum_probs=222.2
Q ss_pred CCCHHHHHHHHhhhcCCccEEEEC--CeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHhhhccce
Q 046637 13 PLTPISFLERSAVVYRDRPSVVYG--DVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAGAV 90 (301)
Q Consensus 13 ~~~~~~~l~~~~~~~~~~~al~~~--~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~ 90 (301)
.+++.+++.++++++|+++|+++. ++++||+||.++++++|+.|.+.|+++||+|+++++|++++++++|||+++|++
T Consensus 22 ~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~~~~~~~~~~la~~~~G~~ 101 (537)
T PLN02246 22 HLPLHDYCFERLSEFSDRPCLIDGATGRVYTYADVELLSRRVAAGLHKLGIRQGDVVMLLLPNCPEFVLAFLGASRRGAV 101 (537)
T ss_pred CCcHHHHHHHHHHhCCCCeEEEecCCCceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCChHHHHHHHHHHHcCEE
Confidence 468999999999999999999985 478999999999999999999999999999999999999999999999999999
Q ss_pred eeecCCCCCHHHHHHHHHhcCceEEEEcCCchhhHHHHHHHhccccCCCCceEEccCCCCCCcccccCCCCccHHHHHhh
Q 046637 91 LCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVASSSGNLEYESLLAI 170 (301)
Q Consensus 91 ~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (301)
++|++|..+.+++..+++.+++++++++......+.+.... . . ..++.++... .+...+.++...
T Consensus 102 ~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~-~----~-~~~i~~~~~~---------~~~~~~~~~~~~ 166 (537)
T PLN02246 102 TTTANPFYTPAEIAKQAKASGAKLIITQSCYVDKLKGLAED-D----G-VTVVTIDDPP---------EGCLHFSELTQA 166 (537)
T ss_pred EecCCCCCCHHHHHHHHHhcCCcEEEEccchHHHHHHHhhc-C----C-ceEEEeCCCC---------CCceeHHHHhcC
Confidence 99999999999999999999999999988776655443321 1 2 2344444321 112344554433
Q ss_pred ccccccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHH----HhhCCCCCEEEEeccchhhhhhHH-HHHH
Q 046637 171 GKLREVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAAL----FNEMGLMPTYLWCVPMFHCNGWCL-TWAV 245 (301)
Q Consensus 171 ~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~----~~~~~~~~~~l~~~p~~h~~g~~~-~~~~ 245 (301)
...........++++++++|||||||.||||+++|.++..+...... .+.+..+|++++..|++|.+++.. ++.+
T Consensus 167 ~~~~~~~~~~~~~~~~~i~~TSGtTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~~ 246 (537)
T PLN02246 167 DENELPEVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMFHIYSLNSVLLCG 246 (537)
T ss_pred CCCCCCCCCCCccCEEEEEeCCCCCCCCceEEEeHHHHHHHHHHHhhccccccCCCCCcEEEEeechHHHHHHHHHHHHH
Confidence 22221222356789999999999999999999999999877665433 456789999999999999999865 6778
Q ss_pred HHhCCeEEeeCCCCHHHHHHHHHhcCcceecCChHHHHHHHcCCCCcccccc
Q 046637 246 AAQGGTNVCQRTVNAKEIFDNITRHKVTHFGGAPTVLNMIANAPPVFENRFR 297 (301)
Q Consensus 246 l~~g~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~ 297 (301)
+..|+++++.+.+++..+++.++++++|++.++|+++..|++.+.....+++
T Consensus 247 l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~ 298 (537)
T PLN02246 247 LRVGAAILIMPKFEIGALLELIQRHKVTIAPFVPPIVLAIAKSPVVEKYDLS 298 (537)
T ss_pred HhcCCEEEEeCCCCHHHHHHHHHHhCceEEEcchHHHHHHhcCccccccCcc
Confidence 9999999999999999999999999999999999999999987665544443
|
|
| >TIGR02188 Ac_CoA_lig_AcsA acetate--CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-37 Score=285.98 Aligned_cols=270 Identities=21% Similarity=0.313 Sum_probs=212.6
Q ss_pred HHHHHHHHhhhcCCccEEEECC------eeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHhhhccc
Q 046637 16 PISFLERSAVVYRDRPSVVYGD------VQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAGA 89 (301)
Q Consensus 16 ~~~~l~~~~~~~~~~~al~~~~------~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~ 89 (301)
..++|++.++++|+++|+++.+ +.+||+||.+++.++|+.|+++|+++||+|+++++|+++++++++||+++|+
T Consensus 59 ~~~~l~~~~~~~p~~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Ga 138 (625)
T TIGR02188 59 SYNCVDRHLEARPDKVAIIWEGDEPGEVRKITYRELHREVCRFANVLKSLGVKKGDRVAIYMPMIPEAAIAMLACARIGA 138 (625)
T ss_pred HHHHHHHhhccCCCCeEEEEEcCCCCceEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhCC
Confidence 3467778888899999999743 4899999999999999999999999999999999999999999999999999
Q ss_pred eeeecCCCCCHHHHHHHHHhcCceEEEEcCCch---------hhHHHHHHHhccccCCCCceEEccCCCCCCcccccCCC
Q 046637 90 VLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLL---------PIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVASSSG 160 (301)
Q Consensus 90 ~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~---------~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 160 (301)
+++|+++.++.+++.+++++++++++|+++... ..+.+.....+. .++.+++++...... ......
T Consensus 139 v~v~i~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~--~~~~~~ 213 (625)
T TIGR02188 139 IHSVVFGGFSAEALADRINDAGAKLVITADEGLRGGKVIPLKAIVDEALEKCPV---SVEHVLVVRRTGNPV--PWVEGR 213 (625)
T ss_pred EEeccCCCCCHHHHHHHHHhcCCCEEEEcCccccCCcccchHHHHHHHHHhCCC---CccEEEEEcCCCCCc--Cccccc
Confidence 999999999999999999999999999987542 222222222110 245555554332110 000111
Q ss_pred CccHHHHHhhccccccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHH-HHHHhhCCCCCEEEEeccchhhhhh
Q 046637 161 NLEYESLLAIGKLREVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLA-AALFNEMGLMPTYLWCVPMFHCNGW 239 (301)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~-~~~~~~~~~~~~~l~~~p~~h~~g~ 239 (301)
...++++..............++++++|+|||||||.||||+++|.+++.+... ....+++.++|++++..|++|+.|.
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~g~ 293 (625)
T TIGR02188 214 DVWWHDLMAKASAYCEPEPMDSEDPLFILYTSGSTGKPKGVLHTTGGYLLYAAMTMKYVFDIKDGDIFWCTADVGWITGH 293 (625)
T ss_pred cccHHHHHhhcCCCCCceecCCCCceEEEecCCCCCCCCeEEECccHhHHHHHHHHHhccCCCCCcEEEECCCchhhhcc
Confidence 234666555433222223466789999999999999999999999998655443 4445678889999999999999886
Q ss_pred HH-HHHHHHhCCeEEeeCC----CCHHHHHHHHHhcCcceecCChHHHHHHHcCCC
Q 046637 240 CL-TWAVAAQGGTNVCQRT----VNAKEIFDNITRHKVTHFGGAPTVLNMIANAPP 290 (301)
Q Consensus 240 ~~-~~~~l~~g~~~v~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~ 290 (301)
.. ++.++..|+++++.+. +++..+++.++++++|+++++|++++.|.+...
T Consensus 294 ~~~~~~~l~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~ 349 (625)
T TIGR02188 294 SYIVYGPLANGATTVMFEGTPTYPDPGRFWEIIEKHKVTIFYTAPTAIRALMRLGD 349 (625)
T ss_pred HHHHHHHHHcCCeEEEECCCCCCCChhHHHHHHHHhCCeEEEeCHHHHHHHHhcCC
Confidence 54 7888999999998753 489999999999999999999999999998654
|
This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by Pfam model pfam00501. |
| >PRK08162 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-36 Score=278.05 Aligned_cols=287 Identities=54% Similarity=0.875 Sum_probs=228.3
Q ss_pred cccccCCCCCCCCHHHHHHHHhhhcCCccEEEECCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHH
Q 046637 3 GMIRCSANYVPLTPISFLERSAVVYRDRPSVVYGDVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHF 82 (301)
Q Consensus 3 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~al~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~l 82 (301)
.+-+......++++.+.|++.++.+|+++|+.+.++.+||+||.+.+.++|..|.+.|+++||+|+++++|++++++++|
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ty~~L~~~~~~~a~~L~~~g~~~g~~v~i~~~~~~~~~~~~l 86 (545)
T PRK08162 7 GLDRNAANYVPLTPLSFLERAAEVYPDRPAVIHGDRRRTWAETYARCRRLASALARRGIGRGDTVAVLLPNIPAMVEAHF 86 (545)
T ss_pred ccCccccccccCCHHHHHHHHHHHCCCCeEEEECCeEEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHH
Confidence 34445556668899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhccceeeecCCCCCHHHHHHHHHhcCceEEEEcCCchhhHHHHHHHhccccCCCCceEEccCCCCCCcccccCCCCc
Q 046637 83 GVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVASSSGNL 162 (301)
Q Consensus 83 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 162 (301)
||+++|++++|+++..+.+++..+++.++++.++++......+.+.....+ ....+.++.... ........+..
T Consensus 87 A~~~~G~~~vpl~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~-~~~~~~~~~~~ 160 (545)
T PRK08162 87 GVPMAGAVLNTLNTRLDAASIAFMLRHGEAKVLIVDTEFAEVAREALALLP-----GPKPLVIDVDDP-EYPGGRFIGAL 160 (545)
T ss_pred HHHHhCcEEeccccccChHHHHHHHHhCCCeEEEEccchhhHHHHHHhhCC-----CCceEEEecCcc-ccccCCCcccc
Confidence 999999999999999999999999999999999999887766655443332 122233322211 00011112334
Q ss_pred cHHHHHhhcccc-ccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhhCCCCCEEEEeccchhhhhhHH
Q 046637 163 EYESLLAIGKLR-EVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPTYLWCVPMFHCNGWCL 241 (301)
Q Consensus 163 ~~~~~~~~~~~~-~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~h~~g~~~ 241 (301)
.+.++....... ........+++++|+|||||||.||||+++|.++..+.......+.+..++++++..|++|.+|+..
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~~~~~ 240 (545)
T PRK08162 161 DYEAFLASGDPDFAWTLPADEWDAIALNYTSGTTGNPKGVVYHHRGAYLNALSNILAWGMPKHPVYLWTLPMFHCNGWCF 240 (545)
T ss_pred cHHHHhccCCccccccCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhcCCCCCCeeEeccCcHhhhhHHH
Confidence 566665443222 1111233457899999999999999999999998777666666677888899999999999999876
Q ss_pred HHHHHHhCCeEEeeCCCCHHHHHHHHHhcCcceecCChHHHHHHHcCCCCcccc
Q 046637 242 TWAVAAQGGTNVCQRTVNAKEIFDNITRHKVTHFGGAPTVLNMIANAPPVFENR 295 (301)
Q Consensus 242 ~~~~l~~g~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~ 295 (301)
.+...+.|++.++...+++..+++.++++++|++.++|++++.|++.+......
T Consensus 241 ~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~ 294 (545)
T PRK08162 241 PWTVAARAGTNVCLRKVDPKLIFDLIREHGVTHYCGAPIVLSALINAPAEWRAG 294 (545)
T ss_pred HHHHHHHccEEEEeCCCCHHHHHHHHHHcCCeEEEechHHHHHHHhCccccccC
Confidence 555556777777778899999999999999999999999999999876544333
|
|
| >PRK08316 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-36 Score=276.78 Aligned_cols=278 Identities=28% Similarity=0.375 Sum_probs=229.7
Q ss_pred CCCCHHHHHHHHhhhcCCccEEEECCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHhhhcccee
Q 046637 12 VPLTPISFLERSAVVYRDRPSVVYGDVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAGAVL 91 (301)
Q Consensus 12 ~~~~~~~~l~~~~~~~~~~~al~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~ 91 (301)
...++.++|...++.+||++|+++.++.+||+||.+.+.++|..|.+.|+++|++|+++++|++++++++|||+++|+++
T Consensus 9 ~~~~l~~~l~~~a~~~~~~~a~~~~~~~~Ty~~l~~~~~~~a~~L~~~gi~~~~~V~l~~~~~~~~~~~~~a~~~~G~~~ 88 (523)
T PRK08316 9 RRQTIGDILRRSARRYPDKTALVFGDRSWTYAELDAAVNRVAAALLDLGLKKGDRVAALGHNSDAYALLWLACARAGAVH 88 (523)
T ss_pred cCCCHHHHHHHHHHHCCCCeEEEECCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHhcCcEE
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCCCHHHHHHHHHhcCceEEEEcCCchhhHHHHHHHhccccCCCCceEEccCCCCCCcccccCCCCccHHHHHhhc
Q 046637 92 CTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVASSSGNLEYESLLAIG 171 (301)
Q Consensus 92 v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (301)
+|+++..+.+++..+++.+++++++++......+.+..+... ...+........ .........++++....
T Consensus 89 v~l~~~~~~~~i~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 159 (523)
T PRK08316 89 VPVNFMLTGEELAYILDHSGARAFLVDPALAPTAEAALALLP-----VDTLILSLVLGG----REAPGGWLDFADWAEAG 159 (523)
T ss_pred EecccccCHHHHHHHHHhCCCCEEEEccchHHHHHHHhhhcC-----ccceeeeecccc----cccccchhhHHHHHhcC
Confidence 999999999999999999999999999877666554433322 111111111100 00112234455554433
Q ss_pred cccccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhhCCCCCEEEEeccchhhhhhHH-HHHHHHhCC
Q 046637 172 KLREVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPTYLWCVPMFHCNGWCL-TWAVAAQGG 250 (301)
Q Consensus 172 ~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~h~~g~~~-~~~~l~~g~ 250 (301)
...........+++++|+|||||||.||+|.+||.+++.+.......+++.+++++++..|++|.+|+.. ++.++..|+
T Consensus 160 ~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~h~~g~~~~~~~~~~~G~ 239 (523)
T PRK08316 160 SVAEPDVELADDDLAQILYTSGTESLPKGAMLTHRALIAEYVSCIVAGDMSADDIPLHALPLYHCAQLDVFLGPYLYVGA 239 (523)
T ss_pred CCccCccCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHHhCCCCCceEEEccCCchhhhHHHHHHHHHhcCc
Confidence 3322334466789999999999999999999999999988888888888999999999999999999875 556688999
Q ss_pred eEEeeCCCCHHHHHHHHHhcCcceecCChHHHHHHHcCCCCccccccC
Q 046637 251 TNVCQRTVNAKEIFDNITRHKVTHFGGAPTVLNMIANAPPVFENRFRG 298 (301)
Q Consensus 251 ~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~ 298 (301)
++++.+.+++..+++.++++++|++.++|+++..|++.......++++
T Consensus 240 ~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~ 287 (523)
T PRK08316 240 TNVILDAPDPELILRTIEAERITSFFAPPTVWISLLRHPDFDTRDLSS 287 (523)
T ss_pred eEEEecCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHcCcccccCCccc
Confidence 999998889999999999999999999999999999887666555543
|
|
| >PRK06334 long chain fatty acid--[acyl-carrier-protein] ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-37 Score=282.20 Aligned_cols=272 Identities=18% Similarity=0.176 Sum_probs=216.3
Q ss_pred CCCCCCCHHHHHHHHhhhcCCccEEEECC-eeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHhhhc
Q 046637 9 ANYVPLTPISFLERSAVVYRDRPSVVYGD-VQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMA 87 (301)
Q Consensus 9 ~~~~~~~~~~~l~~~~~~~~~~~al~~~~-~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~ 87 (301)
..++..++.+.|.+.++++|+++++.+.+ +++||+||.++++++|..|.+. +||+|+++++|++++++++|||+++
T Consensus 14 ~~~~~~~~~~~~~~~~~~~p~~~a~~~~~~~~~Ty~el~~~~~~lA~~L~~~---~gd~Val~~~n~~e~~~~~lA~~~~ 90 (539)
T PRK06334 14 KLRSGKTVLESFLKLCSEMTTATVCWDEQLGKLSYNQVRKAVIALATKVSKY---PDQHIGIMMPASAGAYIAYFATLLS 90 (539)
T ss_pred ccCcCCcHHHHHHHHHHhCCCceEEEeCCCCcccHHHHHHHHHHHHHHHhhc---cCCeEEEEcCCchHHHHHHHHHHhc
Confidence 45667899999999999999999998866 7999999999999999999873 8999999999999999999999999
Q ss_pred cceeeecCCCCCHHHHHHHHHhcCceEEEEcCCchhhHHHHHHHhccccCCC-CceEEccCCCCCCcccccCCCCccHHH
Q 046637 88 GAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKL-PLLVLVPECGEPVSTVASSSGNLEYES 166 (301)
Q Consensus 88 G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~ 166 (301)
|++++|+++.++.+++.++++.+++++++++.+....+.+...... .. ..++.+++... ...+.+
T Consensus 91 G~v~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~----~~~~~~i~~~~~~~----------~~~~~~ 156 (539)
T PRK06334 91 GKIPVMINWSQGLREVTACANLVGVTHVLTSKQLMQHLAQTHGEDA----EYPFSLIYMEEVRK----------ELSFWE 156 (539)
T ss_pred CCeeEecCcccchHHHHHHHHHcCCCEEEehHHHHHHHhhhhhccc----cccccEEEEehhhh----------hccHHH
Confidence 9999999999999999999999999999998765544433221100 11 12333332110 001111
Q ss_pred HHhh-----ccc-----cccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhhCCCCCEEEEeccchhh
Q 046637 167 LLAI-----GKL-----REVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPTYLWCVPMFHC 236 (301)
Q Consensus 167 ~~~~-----~~~-----~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~h~ 236 (301)
.... ... ........++++++|+|||||||.||||++||.++..+.......+.+..+|++++.+|++|.
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~ 236 (539)
T PRK06334 157 KCRIGIYMSIPFEWLMRWFGVSDKDPEDVAVILFTSGTEKLPKGVPLTHANLLANQRACLKFFSPKEDDVMMSFLPPFHA 236 (539)
T ss_pred hhhhhhhhcCCchhhhhcccCCCCCcCCEEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhcCCCCCceEEEecchHhh
Confidence 1000 000 001123567899999999999999999999999999887777777888899999999999999
Q ss_pred hhhHH-HHHHHHhCCeEEeeC-CCCHHHHHHHHHhcCcceecCChHHHHHHHcCCCCcccccc
Q 046637 237 NGWCL-TWAVAAQGGTNVCQR-TVNAKEIFDNITRHKVTHFGGAPTVLNMIANAPPVFENRFR 297 (301)
Q Consensus 237 ~g~~~-~~~~l~~g~~~v~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~ 297 (301)
+|+.. ++.++..|+++++.+ .+++..+++.|+++++|++.++|++++.|++.+.....+++
T Consensus 237 ~g~~~~~~~~l~~G~~vv~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~ 299 (539)
T PRK06334 237 YGFNSCTLFPLLSGVPVVFAYNPLYPKKIVEMIDEAKVTFLGSTPVFFDYILKTAKKQESCLP 299 (539)
T ss_pred hhhHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHHhCCcEEEecHHHHHHHHHhhhhcccccc
Confidence 99874 678899999998875 57999999999999999999999999999887654444443
|
|
| >PRK08180 feruloyl-CoA synthase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-37 Score=283.78 Aligned_cols=266 Identities=20% Similarity=0.126 Sum_probs=208.1
Q ss_pred CCCCCHHHHHHHHhhhcCCccEEEECC-----eeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHhh
Q 046637 11 YVPLTPISFLERSAVVYRDRPSVVYGD-----VQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVP 85 (301)
Q Consensus 11 ~~~~~~~~~l~~~~~~~~~~~al~~~~-----~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~ 85 (301)
....++.+.|++.++++|+++|+++.+ +.+||+||.++++++|++|.+.|+++||+|+++++|++++++++|||+
T Consensus 36 ~~~~~l~~~l~~~a~~~p~~~a~~~~~~~~~~~~~Ty~el~~~v~~~A~~L~~~Gv~~gd~Vai~~~n~~e~~~~~lA~~ 115 (614)
T PRK08180 36 DYPRRLTDRLVHWAQEAPDRVFLAERGADGGWRRLTYAEALERVRAIAQALLDRGLSAERPLMILSGNSIEHALLALAAM 115 (614)
T ss_pred CcCccHHHHHHHHHHHCCCCceeeeccCCCceeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCCCHHHHHHHHHHH
Confidence 346789999999999999999998752 689999999999999999999999999999999999999999999999
Q ss_pred hccceeeecCCCCC-----HHHHHHHHHhcCceEEEEcCCchhhHHHHHHHhccccCCCCceEEccCCCCCCcccccCCC
Q 046637 86 MAGAVLCTLNTRHD-----SAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVASSSG 160 (301)
Q Consensus 86 ~~G~~~v~l~~~~~-----~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 160 (301)
++|++++|++|.++ .+++.+++++++++++|+++... .......... ....++..+.... ..+
T Consensus 116 ~~Gav~vpl~~~~~~~~~~~~~l~~~l~~~~~~~li~~~~~~--~~~~~~~~~~---~~~~~i~~~~~~~-------~~~ 183 (614)
T PRK08180 116 YAGVPYAPVSPAYSLVSQDFGKLRHVLELLTPGLVFADDGAA--FARALAAVVP---ADVEVVAVRGAVP-------GRA 183 (614)
T ss_pred HcCCeEeeeccccccccCCHHHHHHHHhcCCCcEEEEcCHHH--HHHHHhhhcc---CCceEEEecCCCC-------Ccc
Confidence 99999999999988 79999999999999999975421 1111111110 1122333322110 011
Q ss_pred CccHHHHHhhcccc---ccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhhCC--CCCEEEEeccchh
Q 046637 161 NLEYESLLAIGKLR---EVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMG--LMPTYLWCVPMFH 235 (301)
Q Consensus 161 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~--~~~~~l~~~p~~h 235 (301)
...+.++....... .......++++++|+|||||||.||||++||.++..+.......+... .++++++.+|++|
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~l~~lPl~h 263 (614)
T PRK08180 184 ATPFAALLATPPTAAVDAAHAAVGPDTIAKFLFTSGSTGLPKAVINTHRMLCANQQMLAQTFPFLAEEPPVLVDWLPWNH 263 (614)
T ss_pred cccHHHHhccccccchhhhccCCCcCceEEEEECCCCCCCCCEEEeehHHHHHHHHHHHhhccccCCCCcEEEEecchHH
Confidence 24566555432111 111234678999999999999999999999999998877766666653 5689999999999
Q ss_pred hhhhH-HHHHHHHhCCeEEeeC-CCCH---HHHHHHHHhcCcceecCChHHHHHHHcC
Q 046637 236 CNGWC-LTWAVAAQGGTNVCQR-TVNA---KEIFDNITRHKVTHFGGAPTVLNMIANA 288 (301)
Q Consensus 236 ~~g~~-~~~~~l~~g~~~v~~~-~~~~---~~~~~~i~~~~~t~~~~~P~~~~~l~~~ 288 (301)
.+|+. .++.++..|+++++.+ .+++ ..+++.++++++|+++++|++++.|++.
T Consensus 264 ~~g~~~~~~~~l~~G~~v~~~~~~~~~~~~~~~l~~i~~~~~t~~~~vP~~~~~l~~~ 321 (614)
T PRK08180 264 TFGGNHNLGIVLYNGGTLYIDDGKPTPGGFDETLRNLREISPTVYFNVPKGWEMLVPA 321 (614)
T ss_pred HhhHHHHHHHHHhcCCEEEEeCCCccchhHHHHHHHHHHhCCcEEechHHHHHHHHHH
Confidence 99976 4677899999999876 3444 4678899999999999999999999864
|
|
| >PRK03640 O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-36 Score=275.81 Aligned_cols=245 Identities=26% Similarity=0.298 Sum_probs=212.2
Q ss_pred CCHHHHHHHHhhhcCCccEEEECCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHhhhccceeee
Q 046637 14 LTPISFLERSAVVYRDRPSVVYGDVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAGAVLCT 93 (301)
Q Consensus 14 ~~~~~~l~~~~~~~~~~~al~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~ 93 (301)
+++.++|++.++++||++|+++.++.+||+|+.+++++++..|.+.|+++|++|+++++|++++++++|||+++|++++|
T Consensus 2 ~~~~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~~a~~L~~~g~~~~~~v~i~~~~~~~~~~~~la~~~~G~~~v~ 81 (483)
T PRK03640 2 ETMPNWLKQRAFLTPDRTAIEFEEKKVTFMELHEAVVSVAGKLAALGVKKGDRVALLMKNGMEMILVIHALQQLGAVAVL 81 (483)
T ss_pred CcHHHHHHHHHHhCCCceEEEeCCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHhCCcEEEe
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHhcCceEEEEcCCchhhHHHHHHHhccccCCCCceEEccCCCCCCcccccCCCCccHHHHHhhccc
Q 046637 94 LNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVASSSGNLEYESLLAIGKL 173 (301)
Q Consensus 94 l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (301)
+++..+.+++..+++.++++.+++++.......... . ..++++......
T Consensus 82 i~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~-----------~--------------------~~~~~~~~~~~~ 130 (483)
T PRK03640 82 LNTRLSREELLWQLDDAEVKCLITDDDFEAKLIPGI-----------S--------------------VKFAELMNGPKE 130 (483)
T ss_pred cCcCCCHHHHHHHHHhCCCCEEEEcchhhHHHhhhc-----------c--------------------ccHHHHhhcccc
Confidence 999999999999999999999999875443221110 0 112222211111
Q ss_pred c-ccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhhCCCCCEEEEeccchhhhhhHHHHHHHHhCCeE
Q 046637 174 R-EVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPTYLWCVPMFHCNGWCLTWAVAAQGGTN 252 (301)
Q Consensus 174 ~-~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~h~~g~~~~~~~l~~g~~~ 252 (301)
. .......++++++++|||||||.||+|.+||.++...+......+++.++|++++..|++|.+|+..++.++..|+++
T Consensus 131 ~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~ 210 (483)
T PRK03640 131 EAEIQEEFDLDEVATIMYTSGTTGKPKGVIQTYGNHWWSAVGSALNLGLTEDDCWLAAVPIFHISGLSILMRSVIYGMRV 210 (483)
T ss_pred cCCCCCCCCCCCeEEEEeCCCcCCCCcEEEEecHHHHHHHHHHHHhcCCCcCcEEEEecCHHHHHHHHHHHHHHhcCCEE
Confidence 1 122235678899999999999999999999999988877777778889999999999999999988888889999999
Q ss_pred EeeCCCCHHHHHHHHHhcCcceecCChHHHHHHHcCC
Q 046637 253 VCQRTVNAKEIFDNITRHKVTHFGGAPTVLNMIANAP 289 (301)
Q Consensus 253 v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~ 289 (301)
++.+.+++.++++.++++++|++.++|+++..|.+..
T Consensus 211 ~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~ 247 (483)
T PRK03640 211 VLVEKFDAEKINKLLQTGGVTIISVVSTMLQRLLERL 247 (483)
T ss_pred EecCCCCHHHHHHHHHHhCCcEEEeHHHHHHHHHhCc
Confidence 9999999999999999999999999999999998654
|
|
| >PF00501 AMP-binding: AMP-binding enzyme; InterPro: IPR000873 A number of prokaryotic and eukaryotic enzymes, which appear to act via an ATP-dependent covalent binding of AMP to their substrate, share a region of sequence similarity [, , ] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-38 Score=278.18 Aligned_cols=255 Identities=27% Similarity=0.359 Sum_probs=198.0
Q ss_pred HHHHhhhcCCccEEEE-CCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHhhhccceeeecCCCC
Q 046637 20 LERSAVVYRDRPSVVY-GDVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAGAVLCTLNTRH 98 (301)
Q Consensus 20 l~~~~~~~~~~~al~~-~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~ 98 (301)
|+++++++||++|+++ .++++||+|+.+++.++|..|.++|+++|++|+++++|+++++++++||+++|++++|++|.+
T Consensus 1 f~~~a~~~pd~~a~~~~~~~~~Ty~~l~~~v~~la~~L~~~g~~~~~~V~i~~~n~~~~~~~~~A~~~~G~~~v~l~~~~ 80 (417)
T PF00501_consen 1 FERQAQRYPDRIALIDDEGRSLTYKQLYERVRKLAAALRKLGVKKGDRVAILLPNSIEFVVAFLACLRAGAIPVPLDPSL 80 (417)
T ss_dssp HHHHHHHSTTSEEEEETTTEEEEHHHHHHHHHHHHHHHHHTTSSTTSEEEEEESSSHHHHHHHHHHHHTT-EEEEEETTS
T ss_pred ChhHHhhCCCceEEEECCCEEEEHHHHHHHHHHHhhHHHHhCCCccccccccCCccceeeeeeccccccccccccccccc
Confidence 6899999999999999 899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHhcCceEEEEc--CCchhhHHHHHHHhccccCCCCceEEccCCCCCCcccccCCCCccHHHHHhhcccccc
Q 046637 99 DSAMVSVLLRHSEAKIIFVD--YQLLPIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVASSSGNLEYESLLAIGKLREV 176 (301)
Q Consensus 99 ~~~~l~~~l~~~~~~~vi~~--~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (301)
+.+++.++++.++++++|+. .+... +.++....... .....++.++.... .....+.........
T Consensus 81 ~~~~~~~~l~~~~~~~ii~~~~~d~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~ 147 (417)
T PF00501_consen 81 SEDELRHILRQSGPKVIITSEAVDSEP-LKKLKSIFKQE-DPSSSIIILDRDDL-----------PKKEALKSASLSDEP 147 (417)
T ss_dssp SHHHHHHHHHHHTESEEEECHHHSCHH-HHHHHHHHTTS-TTTEEEEEESHSSC-----------TTCHHHHHHHHCHCS
T ss_pred ccccccccccccceeEEEEeccccccc-cccchhhhccc-cccccccccccccc-----------ccccccccccccccc
Confidence 99999999999999999981 01111 22222221110 02334555553321 111111111111000
Q ss_pred CCC-CCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHH--HHhhCCCCCEEEEeccchhhhhh-HHHHHHHHhCCeE
Q 046637 177 RRP-KDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAA--LFNEMGLMPTYLWCVPMFHCNGW-CLTWAVAAQGGTN 252 (301)
Q Consensus 177 ~~~-~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~--~~~~~~~~~~~l~~~p~~h~~g~-~~~~~~l~~g~~~ 252 (301)
... ..++++++++|||||||.||+|.++|.++++.+.... ...+++ |++++..|++|.+|+ ..++.++..|+++
T Consensus 148 ~~~~~~~~~~~~i~~TSGTTG~pK~v~~t~~~~~~~~~~~~~~~~~~~~--d~~l~~~p~~~~~g~~~~~~~~l~~G~~~ 225 (417)
T PF00501_consen 148 QSPEDSPDDPAFILFTSGTTGKPKGVVLTHRNLLAQARALALPEYFGLG--DRILSFLPLSHIFGLISALLAALFSGATL 225 (417)
T ss_dssp HSTTHTTTSEEEEEEESSSSSSEEEEEEEHHHHHHHHHHHHHHHTTTTT--TEEEESS-TTSHHHHHHHHHHHHHCTSEE
T ss_pred ccCCCCccceeEeeccccccccccccccccccccccccccccccccccC--ceEEeeccccccccccccccccccccccc
Confidence 000 0568999999999999999999999999998877754 122223 599999999999998 6789999999999
Q ss_pred EeeCCCC---HHHHHHHHHhcCcceecCChHHHHHHHcCC
Q 046637 253 VCQRTVN---AKEIFDNITRHKVTHFGGAPTVLNMIANAP 289 (301)
Q Consensus 253 v~~~~~~---~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~ 289 (301)
++.+... +..+++.++++++|+++++|++++.+++++
T Consensus 226 ~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~ 265 (417)
T PF00501_consen 226 VLPSPFDLFDPESLLELISRYKPTILFAVPSMLEALLQSP 265 (417)
T ss_dssp EEESSHHHHHHHHHHHHHHHHTESEEEEEHHHHHHHHHHH
T ss_pred cccccccccccccchhcccccccccccccccccccccccc
Confidence 9998654 477899999999999999999999999843
|
This region is a Ser/Thr/Gly-rich domain that is further characterised by a conserved Pro-Lys-Gly triplet. The family of enzymes includes luciferase, long chain fatty acid Co-A ligase, acetyl-CoA synthetase and various other closely-related synthetases.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2V7B_A 2Y4O_B 2VSQ_A 3L8C_B 1RY2_A 3KXW_A 3LNV_A 3ETC_B 3A9U_A 3A9V_A .... |
| >PRK00174 acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-36 Score=283.31 Aligned_cols=268 Identities=21% Similarity=0.295 Sum_probs=212.5
Q ss_pred HHHHHHHhhhcCCccEEEECC------eeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHhhhccce
Q 046637 17 ISFLERSAVVYRDRPSVVYGD------VQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAGAV 90 (301)
Q Consensus 17 ~~~l~~~~~~~~~~~al~~~~------~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~ 90 (301)
.++|++.++++|+++|+++.+ +.+||+||.+++.++|+.|.+.|+++||+|+++++|++++++++|||+++|++
T Consensus 70 ~~~l~~~~~~~p~~~Al~~~~~~~~~~~~lTy~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Gav 149 (637)
T PRK00174 70 YNCLDRHLKTRGDKVAIIWEGDDPGDSRKITYRELHREVCRFANALKSLGVKKGDRVAIYMPMIPEAAVAMLACARIGAV 149 (637)
T ss_pred HHHHHHhhccCCCCeEEEEECCCCCceEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCE
Confidence 467888888999999999743 47999999999999999999999999999999999999999999999999999
Q ss_pred eeecCCCCCHHHHHHHHHhcCceEEEEcCCch---------hhHHHHHHHhccccCCCCceEEccCCCCCCcccccCCCC
Q 046637 91 LCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLL---------PIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVASSSGN 161 (301)
Q Consensus 91 ~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~---------~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 161 (301)
++|++|.++.+++.+++++++++++|+++... ..+.+.....+ .++.+++++...... .......
T Consensus 150 ~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~--~~~~~~~ 223 (637)
T PRK00174 150 HSVVFGGFSAEALADRIIDAGAKLVITADEGVRGGKPIPLKANVDEALANCP----SVEKVIVVRRTGGDV--DWVEGRD 223 (637)
T ss_pred EEecCCCCCHHHHHHHHHhcCCcEEEEcCccccCCcccchHHHHHHHHHhCC----CccEEEEEcCCCCCc--CcCCCCc
Confidence 99999999999999999999999999987543 12222222222 455566554332110 0001122
Q ss_pred ccHHHHHhhccccccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHH-HHHHhhCCCCCEEEEeccchhhhhhH
Q 046637 162 LEYESLLAIGKLREVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLA-AALFNEMGLMPTYLWCVPMFHCNGWC 240 (301)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~-~~~~~~~~~~~~~l~~~p~~h~~g~~ 240 (301)
..++++..............++++++|+|||||||.||||+++|.+++.+... ....+++.++|++++..|++|..|..
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 303 (637)
T PRK00174 224 LWWHELVAGASDECEPEPMDAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAAMTMKYVFDYKDGDVYWCTADVGWVTGHS 303 (637)
T ss_pred ccHHHHHhhcCCCCCccccCCCCcEEEEECCCCCCCCceEEeCcchhHHHHHHHHHhccCCCCCcEEEEcCCchHhhhhH
Confidence 34566654332222223456789999999999999999999999998765443 33456788899999999999998865
Q ss_pred -HHHHHHHhCCeEEeeCC----CCHHHHHHHHHhcCcceecCChHHHHHHHcCCC
Q 046637 241 -LTWAVAAQGGTNVCQRT----VNAKEIFDNITRHKVTHFGGAPTVLNMIANAPP 290 (301)
Q Consensus 241 -~~~~~l~~g~~~v~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~ 290 (301)
.++.++..|+++++.+. +++..+++.++++++|++.++|++++.|++...
T Consensus 304 ~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~ 358 (637)
T PRK00174 304 YIVYGPLANGATTLMFEGVPNYPDPGRFWEVIDKHKVTIFYTAPTAIRALMKEGD 358 (637)
T ss_pred HHHHHHHHcCCEEEEECCCCCCCChHHHHHHHHhcCCeEEeecHHHHHHHHhcCC
Confidence 47888999999998753 479999999999999999999999999988654
|
|
| >PTZ00297 pantothenate kinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-37 Score=297.64 Aligned_cols=265 Identities=15% Similarity=0.133 Sum_probs=215.5
Q ss_pred CCCHHHHHHHHhhhcCCccEEEEC---C--eeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHhhhc
Q 046637 13 PLTPISFLERSAVVYRDRPSVVYG---D--VQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMA 87 (301)
Q Consensus 13 ~~~~~~~l~~~~~~~~~~~al~~~---~--~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~ 87 (301)
..++.++|.+.++++|+++|+... + +++||+|+.+++.++|.+|.++|+++||+|+|+++|+++|+++.+||+++
T Consensus 426 ~~Tl~dll~~~a~~~pd~~al~~~~~~g~~~~lTY~El~~~V~~lAa~L~~lGV~~GDrVaIls~N~~Ewvia~lA~~~~ 505 (1452)
T PTZ00297 426 VRSLGEMWERSVTRHSTFRCLGQTSESGESEWLTYGTVDARARELGSGLLALGVRPGDVIGVDCEASRNIVILEVACALY 505 (1452)
T ss_pred CCCHHHHHHHHHHHCCCCeEEEEeccCCCceEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHc
Confidence 458999999999999999999742 3 68999999999999999999999999999999999999999999999999
Q ss_pred cceeeecCCCCCHHHHHHHHHhcCceEEEEcCCchhhHHHHHHHhccccCCCCceEEccCCCC-CC--cccccCCCCccH
Q 046637 88 GAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGE-PV--STVASSSGNLEY 164 (301)
Q Consensus 88 G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~--~~~~~~~~~~~~ 164 (301)
|++++|+++ +.+++.+++++++++++|++.+....+.+... ..++++++++.... .. ..........+|
T Consensus 506 GaV~VPly~--t~~eL~yIL~~S~akvVfv~~~~l~kl~~i~~------~~Lr~IIv~d~~~~~~~~~~~~~~~i~~~s~ 577 (1452)
T PTZ00297 506 GFTTLPLVG--KGSTMRTLIDEHKIKVVFADRNSVAAILTCRS------RKLETVVYTHSFYDEDDHAVARDLNITLIPY 577 (1452)
T ss_pred CCEEEeCCC--CHHHHHHHHHhcCCcEEEEchhHHHHHHhhcc------cCCcEEEEECCCcccccccccccCCcceeeH
Confidence 999999975 46799999999999999998766655444321 15788888864211 00 000001124568
Q ss_pred HHHHhhcccc--ccCCCCCCCCceEEEe---ccCCCCCCCeeeechHHHHHHHHHHHHHh---hCCCCCEEEEeccchhh
Q 046637 165 ESLLAIGKLR--EVRRPKDECDPIALNY---TSGTTSSPKGVICSHRGAYLNSLAAALFN---EMGLMPTYLWCVPMFHC 236 (301)
Q Consensus 165 ~~~~~~~~~~--~~~~~~~~~~~~~i~~---TSGtTG~pK~v~~s~~~l~~~~~~~~~~~---~~~~~~~~l~~~p~~h~ 236 (301)
+++...+... +......+++++.|+| ||||||.||||++||.|++.++....... ...++|++++.+|++|+
T Consensus 578 ~~ll~~G~~~~~~~~~~~~~dDlatIiYtSyTSGTTG~PKGVmLTH~Nlla~~~~~~~~~~~~~~~~~D~~Ls~LPLaHI 657 (1452)
T PTZ00297 578 EFVEQKGRLCPVPLKEHVTTDTVFTYVVDNTTSASGDGLAVVRVTHADVLRDISTLVMTGVLPSSFKKHLMVHFTPFAML 657 (1452)
T ss_pred HHHHhcCcccCccccCCCCcccEEEEEecCCCCCCCcCCcEEEEeHHHHHHHHHHHhhhccccCCCCCCEEEEechHHHH
Confidence 8888766421 1222346788999996 99999999999999999999888765432 34578999999999999
Q ss_pred hhhHHHHHHHHhCCeEEeeCCCCHHHHHHHHHhcCcceecCChHHHHHHHcC
Q 046637 237 NGWCLTWAVAAQGGTNVCQRTVNAKEIFDNITRHKVTHFGGAPTVLNMIANA 288 (301)
Q Consensus 237 ~g~~~~~~~l~~g~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~ 288 (301)
++....+.++..|+++.+ +++..+++.|+++|||+++++|.+++++.+.
T Consensus 658 ~er~~~~~~l~~G~~I~~---~d~~~lledL~~~rPTv~~~VPrv~ekI~~~ 706 (1452)
T PTZ00297 658 FNRVFVLGLFAHGSAVAT---VDAAHLQRAFVKFQPTILVAAPSLFSTSRLQ 706 (1452)
T ss_pred HHHHHHHHHHHcCCEEEe---CCHHHHHHHHHHHCCEEEEecHHHHHHHHHH
Confidence 997777788899999864 5789999999999999999999999998653
|
|
| >PTZ00216 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-37 Score=287.70 Aligned_cols=268 Identities=21% Similarity=0.243 Sum_probs=209.2
Q ss_pred CCCHHHHHHHHhhhcCCccEEEEC---------------------------CeeeeHHHHHHHHHHHHHHHHhcCCCCCC
Q 046637 13 PLTPISFLERSAVVYRDRPSVVYG---------------------------DVQYTWKETHQRCVKLASGLAHLGISPGD 65 (301)
Q Consensus 13 ~~~~~~~l~~~~~~~~~~~al~~~---------------------------~~~~Ty~el~~~~~~la~~L~~~gv~~g~ 65 (301)
..++.++|.+.++++||++|+.+. .+++||+|+.++++++|++|.++|+++||
T Consensus 68 ~~t~~~~~~~~~~~~p~~~a~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lTy~el~~~~~~lA~~L~~~Gv~~gd 147 (700)
T PTZ00216 68 GPNFLQRLERICKERGDRRALAYRPVERVEKEVVKDADGKERTMEVTHFNETRYITYAELWERIVNFGRGLAELGLTKGS 147 (700)
T ss_pred CCCHHHHHHHHHHhCCCCCeEEEeccccccccccccCCCccccccccccCCceEeEHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 458999999999999999999973 37899999999999999999999999999
Q ss_pred EEEEEcCCCHHHHHHHHHhhhccceeeecCCCCCHHHHHHHHHhcCceEEEEcCCchhhHHHHHHHhccccCCCCceEEc
Q 046637 66 VVAALAPNVPAMYELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLV 145 (301)
Q Consensus 66 ~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 145 (301)
+|+|+++|+++|+++++||+++|++++|+++..+.+++.+++++++++++|++......+........ . ....++.+
T Consensus 148 ~V~i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~lv~~~~~~~~l~~~~~~~~--~-~~~~ii~~ 224 (700)
T PTZ00216 148 NVAIYEETRWEWLASIYGIWSQSMVAATVYANLGEDALAYALRETECKAIVCNGKNVPNLLRLMKSGG--M-PNTTIIYL 224 (700)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCCeEEeeCCCCCHHHHHhhhhccCccEEEECHHHHHHHHHhhhhcc--C-CceEEEEE
Confidence 99999999999999999999999999999999999999999999999999998765443333222111 0 12245555
Q ss_pred cCCCCCCcccccCCCCccHHHHHhhcc--cc--ccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHh--
Q 046637 146 PECGEPVSTVASSSGNLEYESLLAIGK--LR--EVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFN-- 219 (301)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~-- 219 (301)
+..... .........+|+++...+. .. +......++++++|+|||||||.||||++||.|+++++......+
T Consensus 225 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~iiyTSGTTG~PKGV~lth~nl~~~~~~~~~~~~~ 302 (700)
T PTZ00216 225 DSLPAS--VDTEGCRLVAWTDVVAKGHSAGSHHPLNIPENNDDLALIMYTSGTTGDPKGVMHTHGSLTAGILALEDRLND 302 (700)
T ss_pred CCCccc--cccCCceEEEHHHHHHhCCccccccccCCCCCcccEEEEEEeCCCCCcCcEEEEEhHHHHHHHHHHHhhccc
Confidence 432111 0011122356777766542 11 122334678999999999999999999999999998877655443
Q ss_pred ---hCCCCCEEEEeccchhhhhhHHHHHHHHhCCeEEeeCCCCHHHHHH-------HHHhcCcceecCChHHHHHHHcC
Q 046637 220 ---EMGLMPTYLWCVPMFHCNGWCLTWAVAAQGGTNVCQRTVNAKEIFD-------NITRHKVTHFGGAPTVLNMIANA 288 (301)
Q Consensus 220 ---~~~~~~~~l~~~p~~h~~g~~~~~~~l~~g~~~v~~~~~~~~~~~~-------~i~~~~~t~~~~~P~~~~~l~~~ 288 (301)
.+.+++++++.+|++|.+++......+..|+++++. ++..+++ .+++++||++.++|.+++.+.+.
T Consensus 303 ~~~~~~~~d~~ls~lPl~H~~~~~~~~~~l~~G~~v~~~---~~~~l~~~~~~~~~~l~~~~pT~~~~vP~~~~~l~~~ 378 (700)
T PTZ00216 303 LIGPPEEDETYCSYLPLAHIMEFGVTNIFLARGALIGFG---SPRTLTDTFARPHGDLTEFRPVFLIGVPRIFDTIKKA 378 (700)
T ss_pred ccCCCCCCCEEEEEChHHHHHHHHHHHHHHHcCCEEEEC---CHHHhhhhhccccchHHHcCCcEEEechHHHHHHHHH
Confidence 236789999999999999987655567777776652 4566655 68999999999999999998753
|
|
| >PRK06087 short chain acyl-CoA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-36 Score=276.65 Aligned_cols=279 Identities=19% Similarity=0.202 Sum_probs=226.2
Q ss_pred CCCCCCCCHHHHHHHHhhhcCCccEEEECC-eeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHhhh
Q 046637 8 SANYVPLTPISFLERSAVVYRDRPSVVYGD-VQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPM 86 (301)
Q Consensus 8 ~~~~~~~~~~~~l~~~~~~~~~~~al~~~~-~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~ 86 (301)
...|...++.++|++.++++||++|+++.+ +.+||+|+.++++++|+.|.+.|+++||+|+++++|+++++++++||++
T Consensus 17 ~~~~~~~~l~~~~~~~~~~~pd~~a~~~~~~~~~Ty~~l~~~v~~la~~l~~~G~~~gd~V~i~~~n~~~~~~~~lA~~~ 96 (547)
T PRK06087 17 QGYWGDASLADYWQQTARAMPDKIAVVDNHGASYTYSALDHAASRLANWLLAKGIEPGDRVAFQLPGWCEFTIIYLACLK 96 (547)
T ss_pred cCCCCCCCHHHHHHHHHHHCCCceEEEcCCCCEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHH
Confidence 345677899999999999999999999876 7999999999999999999999999999999999999999999999999
Q ss_pred ccceeeecCCCCCHHHHHHHHHhcCceEEEEcCCch-----hhHHHHHHHhccccCCCCceEEccCCCCCCcccccCCCC
Q 046637 87 AGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLL-----PIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVASSSGN 161 (301)
Q Consensus 87 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 161 (301)
+|++++|++|..+.+++.++++.+++++++++.... ..+........ .++.++.++..... ...
T Consensus 97 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~-------~~~ 165 (547)
T PRK06087 97 VGAVSVPLLPSWREAELVWVLNKCQAKMFFAPTLFKQTRPVDLILPLQNQLP----QLQQIVGVDKLAPA-------TSS 165 (547)
T ss_pred cCcEEeccchhcCHHHHHHHHHhcCCeEEEEecccccccHHHHHHHHHhhCC----CCcEEEEeCCcCCC-------cCc
Confidence 999999999999999999999999999999976432 22222222222 34456555543211 111
Q ss_pred ccHHHHHhhccccccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhhCCCCCEEEEeccchhhhhhHH
Q 046637 162 LEYESLLAIGKLREVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPTYLWCVPMFHCNGWCL 241 (301)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~h~~g~~~ 241 (301)
..+.++...............+++++|+|||||||.||+|.++|.++..........+++.+++++++..|++|.+|+..
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~ 245 (547)
T PRK06087 166 LSLSQIIADYEPLTTAITTHGDELAAVLFTSGTEGLPKGVMLTHNNILASERAYCARLNLTWQDVFMMPAPLGHATGFLH 245 (547)
T ss_pred cCHHHHhccCCcccCCCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhcCCCCCCeEEEecchHHHHHHHH
Confidence 24444443322222222356789999999999999999999999999888877777778889999999999999999764
Q ss_pred -HHHHHHhCCeEEeeCCCCHHHHHHHHHhcCcceecCChHHHHHHHcCCCCcccccc
Q 046637 242 -TWAVAAQGGTNVCQRTVNAKEIFDNITRHKVTHFGGAPTVLNMIANAPPVFENRFR 297 (301)
Q Consensus 242 -~~~~l~~g~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~ 297 (301)
.+.++..|+++++.+.+++..+++.++++++|+++.+|..+..+++.......+++
T Consensus 246 ~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~~~~~~~~l~~~~~~~~~~~ 302 (547)
T PRK06087 246 GVTAPFLIGARSVLLDIFTPDACLALLEQQRCTCMLGATPFIYDLLNLLEKQPADLS 302 (547)
T ss_pred HHHHHHhcCCEEEecCCCCHHHHHHHHHHcCCCEEeccHHHHHHHHhccccCCCCCC
Confidence 67788899999999999999999999999999999888888888776554444443
|
|
| >PRK08008 caiC putative crotonobetaine/carnitine-CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-36 Score=274.82 Aligned_cols=270 Identities=22% Similarity=0.308 Sum_probs=219.6
Q ss_pred CCCHHHHHHHHhhhcCCccEEEECC-----eeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHhhhc
Q 046637 13 PLTPISFLERSAVVYRDRPSVVYGD-----VQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMA 87 (301)
Q Consensus 13 ~~~~~~~l~~~~~~~~~~~al~~~~-----~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~ 87 (301)
..++.++|++.++++|+++|+++.+ +.+||+||.+.++++|+.|.++|+++||+|+++++|+.++++++|||+++
T Consensus 6 ~~~l~~~~~~~a~~~p~~~a~~~~~~~~~~~~~ty~~l~~~v~~la~~L~~~g~~~~~~v~i~~~n~~~~~~~~la~~~~ 85 (517)
T PRK08008 6 GQHLRQMWDDLADVYGHKTALIFESSGGVVRRYSYLELNEEINRTANLFYSLGIRKGDKVALHLDNCPEFIFCWFGLAKI 85 (517)
T ss_pred cccHHHHHHHHHHHCCCceEEEcccCCCccceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHc
Confidence 3579999999999999999999864 68999999999999999999999999999999999999999999999999
Q ss_pred cceeeecCCCCCHHHHHHHHHhcCceEEEEcCCchhhHHHHHHHhccccCCCCceEEccCCCCCCcccccCCCCccHHHH
Q 046637 88 GAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVASSSGNLEYESL 167 (301)
Q Consensus 88 G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (301)
|+++++++|..+.+++.++++++++++++++.+....+.++...... ..+.++..+.... ...+...+++.
T Consensus 86 G~~~v~l~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~------~~~~~~~~~~~ 156 (517)
T PRK08008 86 GAIMVPINARLLREESAWILQNSQASLLVTSAQFYPMYRQIQQEDAT---PLRHICLTRVALP------ADDGVSSFTQL 156 (517)
T ss_pred CeEEEEcCcccCHHHHHHHHHhcCceEEEEecchhHHHHHHHhhccc---cCcEEEEecCCCc------ccccccCHHHH
Confidence 99999999999999999999999999999998877666655433221 3445555443211 11122345544
Q ss_pred Hhhcccc-ccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhhCCCCCEEEEeccchhhhhhHH-HHHH
Q 046637 168 LAIGKLR-EVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPTYLWCVPMFHCNGWCL-TWAV 245 (301)
Q Consensus 168 ~~~~~~~-~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~h~~g~~~-~~~~ 245 (301)
....... .......++++++|+|||||||.||||++||.++............+..++++++.+|++|..+... ++.+
T Consensus 157 ~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 236 (517)
T PRK08008 157 KAQQPATLCYAPPLSTDDTAEILFTSGTTSRPKGVVITHYNLRFAGYYSAWQCALRDDDVYLTVMPAFHIDCQCTAAMAA 236 (517)
T ss_pred hccCCccccccCCCCCCCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHhhhcCCCCCCeEEEecCcHHHHHHHHHHHHH
Confidence 3332221 1122345689999999999999999999999999865443333445678899999999999877654 6778
Q ss_pred HHhCCeEEeeCCCCHHHHHHHHHhcCcceecCChHHHHHHHcCCCC
Q 046637 246 AAQGGTNVCQRTVNAKEIFDNITRHKVTHFGGAPTVLNMIANAPPV 291 (301)
Q Consensus 246 l~~g~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~ 291 (301)
+..|+++++.+.+++..+++.++++++|++.++|.+++.++..+..
T Consensus 237 l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~ 282 (517)
T PRK08008 237 FSAGATFVLLEKYSARAFWGQVCKYRATITECIPMMIRTLMVQPPS 282 (517)
T ss_pred HhcCcEEEEccccCHHHHHHHHHHcCCcEEechHHHHHHHHhCCCc
Confidence 9899999999999999999999999999999999999999876543
|
|
| >PLN02479 acetate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-36 Score=277.88 Aligned_cols=286 Identities=50% Similarity=0.836 Sum_probs=221.2
Q ss_pred cccCCCCCCCCHHHHHHHHhhhcCCccEEEECCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHh
Q 046637 5 IRCSANYVPLTPISFLERSAVVYRDRPSVVYGDVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGV 84 (301)
Q Consensus 5 ~~~~~~~~~~~~~~~l~~~~~~~~~~~al~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~ 84 (301)
....+.+..+++++.|.+.++.+|+++|+++.++.+||+||.+++.++|..|.+.|+++||+|+++++|+++++++++||
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~p~~~a~~~~~~~~ty~eL~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~~~~~~~la~ 90 (567)
T PLN02479 11 PKNAANYTALTPLWFLERAAVVHPTRKSVVHGSVRYTWAQTYQRCRRLASALAKRSIGPGSTVAVIAPNIPAMYEAHFGV 90 (567)
T ss_pred cCccccccccCHHHHHHHHHhhCCCceEEEECCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHH
Confidence 34455556678999999999999999999999899999999999999999999999999999999999999999999999
Q ss_pred hhccceeeecCCCCCHHHHHHHHHhcCceEEEEcCCchhhHHHHHHHhccc---cCCCCceEEccCCCCCC--cccccCC
Q 046637 85 PMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKT---SAKLPLLVLVPECGEPV--STVASSS 159 (301)
Q Consensus 85 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~~~--~~~~~~~ 159 (301)
+++|++++|+++..+.+++.++++.++++++++++...+...+........ ....+.++.++...... .......
T Consensus 91 ~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (567)
T PLN02479 91 PMAGAVVNCVNIRLNAPTIAFLLEHSKSEVVMVDQEFFTLAEEALKILAEKKKSSFKPPLLIVIGDPTCDPKSLQYALGK 170 (567)
T ss_pred HhCCcEEEEeccccCHHHHHHHHhhcCceEEEEchhhhhHHHHHHHHHhhcccccCCCceEEEecCCcCCcccccccccc
Confidence 999999999999999999999999999999999987765554443332211 00123344443221100 0001112
Q ss_pred CCccHHHHHhhccccc-cCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhhCCCCCEEEEeccchhhhh
Q 046637 160 GNLEYESLLAIGKLRE-VRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPTYLWCVPMFHCNG 238 (301)
Q Consensus 160 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~h~~g 238 (301)
+...+.+++....... .......+++++++|||||||.||||++||.++..........+++..++++++..|++|.+|
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~yTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~p~~h~~~ 250 (567)
T PLN02479 171 GAIEYEKFLETGDPEFAWKPPADEWQSIALGYTSGTTASPKGVVLHHRGAYLMALSNALIWGMNEGAVYLWTLPMFHCNG 250 (567)
T ss_pred CcccHHHHHhccccccccCCCCCcccceEEEECCCCCCCCcEEEeccHHHHHHHHHHHhhcCCCCCCEEEEecchhhhhh
Confidence 3345666655432221 111233456788999999999999999999998776666666677888999999999999999
Q ss_pred hHHHHHHHHhCCeEEeeCCCCHHHHHHHHHhcCcceecCChHHHHHHHcCCC
Q 046637 239 WCLTWAVAAQGGTNVCQRTVNAKEIFDNITRHKVTHFGGAPTVLNMIANAPP 290 (301)
Q Consensus 239 ~~~~~~~l~~g~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~ 290 (301)
+...+.....++..+..+.+++..+++.++++++|++.++|++++.|.+...
T Consensus 251 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~ 302 (567)
T PLN02479 251 WCFTWTLAALCGTNICLRQVTAKAIYSAIANYGVTHFCAAPVVLNTIVNAPK 302 (567)
T ss_pred HHHHHHHHhhcCceEeccCCCHHHHHHHHHHcCCeEEEecHHHHHHHHhhhh
Confidence 8765544344555556677899999999999999999999999999987654
|
|
| >PTZ00237 acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-36 Score=282.96 Aligned_cols=270 Identities=18% Similarity=0.171 Sum_probs=203.5
Q ss_pred HHHHHHHhhh--cCCccEEEEC------CeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHhhhcc
Q 046637 17 ISFLERSAVV--YRDRPSVVYG------DVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAG 88 (301)
Q Consensus 17 ~~~l~~~~~~--~~~~~al~~~------~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G 88 (301)
.+++++.++. +||++|+++. .+++||+||.+++.++|..|+++|+++||+|+++++|++++++++|||+++|
T Consensus 62 ~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GDrV~i~~~n~~e~~~~~lA~~~~G 141 (647)
T PTZ00237 62 YNVLDIHVKNPLKRDQDALIYECPYLKKTIKLTYYQLYEKVCEFSRVLLNLNISKNDNVLIYMANTLEPLIAMLSCARIG 141 (647)
T ss_pred HHHHHHhhcccCCCCceEEEEEcCCCCceEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhC
Confidence 4677777654 7999999873 3589999999999999999999999999999999999999999999999999
Q ss_pred ceeeecCCCCCHHHHHHHHHhcCceEEEEcCCc---------hhhHHHHHHHhccccCCCCceEEccCCCC---CCc---
Q 046637 89 AVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQL---------LPIAQGAFEILSKTSAKLPLLVLVPECGE---PVS--- 153 (301)
Q Consensus 89 ~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~---------~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~--- 153 (301)
++++|+++.++.+++.+++++++++++|+++.. .+.+.+... ... ...++++.+..... ...
T Consensus 142 av~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~vi~~~~~~~~~~~~~~~~ 218 (647)
T PTZ00237 142 ATHCVLFDGYSVKSLIDRIETITPKLIITTNYGILNDEIITFTPNLKEAIE-LST--FKPSNVITLFRNDITSESDLKKI 218 (647)
T ss_pred cEEEeeCCCCCHHHHHHHHHhcCCCEEEEcccceeCCceechHHHHHHHHh-ccc--CCCCEEEEEEcCCcccccccccc
Confidence 999999999999999999999999999997532 122222222 110 01234554322110 000
Q ss_pred -ccccCCCCccHHHHHhhcc-----ccccCCCCCCCCceEEEeccCCCCCCCeeeechHH-HHHHHHHHHHHhhCCCCCE
Q 046637 154 -TVASSSGNLEYESLLAIGK-----LREVRRPKDECDPIALNYTSGTTSSPKGVICSHRG-AYLNSLAAALFNEMGLMPT 226 (301)
Q Consensus 154 -~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~-l~~~~~~~~~~~~~~~~~~ 226 (301)
......+...|.+++.... .........++++++|+|||||||.||||+++|.+ +...............+++
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~IlyTSGTTG~PKgV~~sh~~~l~~~~~~~~~~~~~~~~d~ 298 (647)
T PTZ00237 219 ETIPTIPNTLSWYDEIKKIKENNQSPFYEYVPVESSHPLYILYTSGTTGNSKAVVRSNGPHLVGLKYYWRSIIEKDIPTV 298 (647)
T ss_pred cccCCCcccccHHHHHhhhccccCCCCCCceeeCCCCcEEEEEcCCCCCCCCeEEEcCcHHHHHHHHHHHHhcCCCCCcE
Confidence 0001112345666654321 10112235678999999999999999999999998 4443333344456677899
Q ss_pred EEEeccchhhhhhHHHHHHHHhCCeEEeeCC--CC----HHHHHHHHHhcCcceecCChHHHHHHHcCC
Q 046637 227 YLWCVPMFHCNGWCLTWAVAAQGGTNVCQRT--VN----AKEIFDNITRHKVTHFGGAPTVLNMIANAP 289 (301)
Q Consensus 227 ~l~~~p~~h~~g~~~~~~~l~~g~~~v~~~~--~~----~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~ 289 (301)
+++..|++|+.+...++.++..|+++++.+. +. +..+++.++++++|+++++|++++.|++..
T Consensus 299 ~~~~~~~~w~~~~~~~~~~l~~G~t~v~~~~~~~~p~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~ 367 (647)
T PTZ00237 299 VFSHSSIGWVSFHGFLYGSLSLGNTFVMFEGGIIKNKHIEDDLWNTIEKHKVTHTLTLPKTIRYLIKTD 367 (647)
T ss_pred EEEcCCCceEeeHHHHHHHHhCCcEEEEeCCCCCCCCCchHHHHHHHHHhCeEEEEeCHHHHHHHHhhC
Confidence 9999999999776678889999999999764 12 688999999999999999999999999753
|
|
| >PRK05857 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-37 Score=280.88 Aligned_cols=281 Identities=19% Similarity=0.182 Sum_probs=214.8
Q ss_pred CCcccccCCCCCCCCHHHHHHHHhhhcCCccEEEECC--eeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHH
Q 046637 1 MEGMIRCSANYVPLTPISFLERSAVVYRDRPSVVYGD--VQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMY 78 (301)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~al~~~~--~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~ 78 (301)
|+....-+.+..+.++.+.|.+.++++|+++|+++.+ +.+||+||.+++.++|+.|.+.|+++|++|+++++|+++++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~e~~ 80 (540)
T PRK05857 1 MGGKKFQAMPQLPSTVLDRVFEQARQQPEAIALRRCDGTSALRYRELVAEVGGLAADLRAQSVSRGSRVLVISDNGPETY 80 (540)
T ss_pred CCcccccccccCCcchHHHHHHHHhhCCCcEEEeecCCCceeeHHHHHHHHHHHHHHHHHhCcCCCCEEEEEcCCCHHHH
Confidence 3433444556668899999999999999999998643 58999999999999999999999999999999999999999
Q ss_pred HHHHHhhhccceeeecCCCCCHHHHHHHHHhcCceEEEEcCCchhhHHHHHHHhccccCCCCceEEccCCCCCCcccccC
Q 046637 79 ELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVASS 158 (301)
Q Consensus 79 ~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 158 (301)
+++|||+++|++++|+++..+.+++.++++.++++++++++..........+... ..+. +.++......
T Consensus 81 ~~~lA~~~~G~v~v~l~~~~~~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~----~~~~-~~~~~~~~~~------ 149 (540)
T PRK05857 81 LSVLACAKLGAIAVMADGNLPIAAIERFCQITDPAAALVAPGSKMASSAVPEALH----SIPV-IAVDIAAVTR------ 149 (540)
T ss_pred HHHHHHHHcCeEEEecCccCCHHHHHHHHHhcCCceEEEeccchhcccccccccc----ccce-eEeecccccc------
Confidence 9999999999999999999999999999999999999998765432211111111 2222 2222211000
Q ss_pred CCCccHHHHHhhccccccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHH----HhhCCCCCEEEEeccch
Q 046637 159 SGNLEYESLLAIGKLREVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAAL----FNEMGLMPTYLWCVPMF 234 (301)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~----~~~~~~~~~~l~~~p~~ 234 (301)
.+.+....... .......++++++++|||||||.||||.+||.++.++...... .+....+++.++..|++
T Consensus 150 ----~~~~~~~~~~~-~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 224 (540)
T PRK05857 150 ----ESEHSLDAASL-AGNADQGSEDPLAMIFTSGTTGEPKAVLLANRTFFAVPDILQKEGLNWVTWVVGETTYSPLPAT 224 (540)
T ss_pred ----ccccccccccc-ccccCCCCCCeEEEEeCCCCCCCCCeEEEechhhhhhhHHhhhccccccccccCceeeecCCcc
Confidence 00000000000 1112356789999999999999999999999999876543221 23455678999999999
Q ss_pred hhhhhHHHHHHHHhCCeEEeeCCCCHHHHHHHHHhcCcceecCChHHHHHHHcCCCCccccccC
Q 046637 235 HCNGWCLTWAVAAQGGTNVCQRTVNAKEIFDNITRHKVTHFGGAPTVLNMIANAPPVFENRFRG 298 (301)
Q Consensus 235 h~~g~~~~~~~l~~g~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~ 298 (301)
|.+|+...+.++..|+++++ .+.++..+++.++++++|+++++|++++.|++.......++++
T Consensus 225 h~~~l~~~~~~l~~G~~~v~-~~~~~~~~~~~i~~~~it~~~~~P~~~~~l~~~~~~~~~~~~~ 287 (540)
T PRK05857 225 HIGGLWWILTCLMHGGLCVT-GGENTTSLLEILTTNAVATTCLVPTLLSKLVSELKSANATVPS 287 (540)
T ss_pred ccchHHHHHHHhhcceeEEe-cCCChhHHHHHHHhcCcceEEeChHHHHHHHhccccCCCcCcc
Confidence 99998878888999998775 4568899999999999999999999999998876554444443
|
|
| >TIGR02275 DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-36 Score=275.71 Aligned_cols=279 Identities=19% Similarity=0.239 Sum_probs=222.6
Q ss_pred CCCCCCCHHHHHHHHhhhcCCccEEEECCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHhhhcc
Q 046637 9 ANYVPLTPISFLERSAVVYRDRPSVVYGDVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAG 88 (301)
Q Consensus 9 ~~~~~~~~~~~l~~~~~~~~~~~al~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G 88 (301)
--|...++.++|++.++++|+++|+++.++.+||+|+.+.++++|..|.+.|+++|++|+++++|++++++++|||+++|
T Consensus 18 ~~~~~~~l~~~~~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~~~~~~~la~~~~G 97 (527)
T TIGR02275 18 GYWQDKPLTDILRDQAARYPDAIAIICGNRQWSYRELDQRADNLAAGLTKLGIGQGDTAVVQLPNIAEFYIVFFALLKLG 97 (527)
T ss_pred CcccCCcHHHHHHHHHHHCCCceEEEeCCceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHHcC
Confidence 34667889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeecCCCCCHHHHHHHHHhcCceEEEEcCCchhh-HHHHHHHhccccCCCCceEEccCCCCCCcccccCCCCccHHHH
Q 046637 89 AVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPI-AQGAFEILSKTSAKLPLLVLVPECGEPVSTVASSSGNLEYESL 167 (301)
Q Consensus 89 ~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (301)
++++++++..+.+++.++++.+++++++++...... ..+.........+.++.++....... ...+...
T Consensus 98 ~~~v~~~~~~~~~~~~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~ 167 (527)
T TIGR02275 98 IAPVLALFSHRKSELTAYAQQIEPALYIIDRAHSLFDYDAFARQLQSKLPTLRNIIVAGQTRV----------EAELFLW 167 (527)
T ss_pred eEEeccccccCHHHHHHHHHhcCCcEEEEcCcccccchHHHHHHHHhhCCcceEEEEecCCCC----------cchhhHH
Confidence 999999999999999999999999999998664321 11111111111112333443322100 0111111
Q ss_pred HhhccccccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhhCCCCCEEEEeccchhhhhhHH--HHHH
Q 046637 168 LAIGKLREVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPTYLWCVPMFHCNGWCL--TWAV 245 (301)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~h~~g~~~--~~~~ 245 (301)
..............++++++|+|||||||.||||++||.++..+.......+.+..+|++++.+|++|.+|+.. .+.+
T Consensus 168 ~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~P~~h~~~~~~~~~~~~ 247 (527)
T TIGR02275 168 LESPAEPVKFPPTKSDEVAFFQLSGGSTGTPKLIPRTHNDYYYSVRRSVEICWLTQQTRYLCALPAAHNYPLSSPGALGV 247 (527)
T ss_pred hhCcCccccCCCCCCCccEEEEeCCCCCCCCceeeeehHHHHHHHHHHHhhcCCCcCCEEEECCChHhhhhhhHHHHHHH
Confidence 11111111122456789999999999999999999999999988887777788889999999999999999764 6778
Q ss_pred HHhCCeEEeeCCCCHHHHHHHHHhcCcceecCChHHHHHHHcCCCCcccccc
Q 046637 246 AAQGGTNVCQRTVNAKEIFDNITRHKVTHFGGAPTVLNMIANAPPVFENRFR 297 (301)
Q Consensus 246 l~~g~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~ 297 (301)
+..|+++++.+.+++..+++.++++++|++.++|++++.+++.......+++
T Consensus 248 l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~ 299 (527)
T TIGR02275 248 FYAGGCVVLAPDPSPTDCFPLIERHKVTVTALVPPAVALWMQAASKSRYDLS 299 (527)
T ss_pred HhcCCeEEECCCCCHHHHHHHHHHhCCeEEEecHHHHHHHHhCccccCCCcc
Confidence 9999999998889999999999999999999999999999887665544443
|
Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB. |
| >PRK06839 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-36 Score=274.86 Aligned_cols=261 Identities=21% Similarity=0.339 Sum_probs=217.5
Q ss_pred CCHHHHHHHHhhhcCCccEEEECCeeeeHHHHHHHHHHHHHHHHh-cCCCCCCEEEEEcCCCHHHHHHHHHhhhccceee
Q 046637 14 LTPISFLERSAVVYRDRPSVVYGDVQYTWKETHQRCVKLASGLAH-LGISPGDVVAALAPNVPAMYELHFGVPMAGAVLC 92 (301)
Q Consensus 14 ~~~~~~l~~~~~~~~~~~al~~~~~~~Ty~el~~~~~~la~~L~~-~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v 92 (301)
..+.+.|++.++.+||++|++++++.+||+||.++++++|+.|.+ .|+++|++|+++++|+++++++++||+++|++++
T Consensus 2 ~~~~~~~~~~a~~~p~~~a~~~~~~~~ty~~l~~~~~~la~~L~~~~g~~~~~~V~i~~~~~~~~~~~~la~~~~G~~~~ 81 (496)
T PRK06839 2 QGIAYWIEKRAYLHPDRIAIITEEEEMTYKQLHEYVSKVAAYLIYELNVKKGERIAILSQNSLEYIVLLFAIAKVECIAV 81 (496)
T ss_pred ccHHHHHHHHHHHCCCCeEEEECCceEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHhcCcEEE
Confidence 357889999999999999999999999999999999999999985 7999999999999999999999999999999999
Q ss_pred ecCCCCCHHHHHHHHHhcCceEEEEcCCchhhHHHHHHHhccccCCCCceEEccCCCCCCcccccCCCCccHHHHHhhcc
Q 046637 93 TLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVASSSGNLEYESLLAIGK 172 (301)
Q Consensus 93 ~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (301)
|+++..+.+++..+++.++++++++++.......+..... ....++.+.+ +.+......
T Consensus 82 ~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~-----~~~~~~~~~~----------------~~~~~~~~~ 140 (496)
T PRK06839 82 PLNIRLTENELIFQLKDSGTTVLFVEKTFQNMALSMQKVS-----YVQRVISITS----------------LKEIEDRKI 140 (496)
T ss_pred ecCcccCHHHHHHHHHhcCceEEEEcHHHHHHHHHhhhcc-----CcceEEEecc----------------hHhhhccCC
Confidence 9999999999999999999999999877655544432221 1233333322 111111111
Q ss_pred ccccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhhCCCCCEEEEeccchhhhhhHH-HHHHHHhCCe
Q 046637 173 LREVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPTYLWCVPMFHCNGWCL-TWAVAAQGGT 251 (301)
Q Consensus 173 ~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~h~~g~~~-~~~~l~~g~~ 251 (301)
.......++++++|+|||||||.||+|.++|.++..+.......+.+..++++++..|++|.+|+.. .+.++..|++
T Consensus 141 --~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~g~~ 218 (496)
T PRK06839 141 --DNFVEKNESASFIICYTSGTTGKPKGAVLTQENMFWNALNNTFAIDLTMHDRSIVLLPLFHIGGIGLFAFPTLFAGGV 218 (496)
T ss_pred --CCCCCCCCCCcEEEEeCCCCCCCCcEEEEEhHHHHHHHHHHHHHcCCCCCCeEEEeeCCcchhhHHHHHHHHHhcCcE
Confidence 1112355688999999999999999999999999877766666778889999999999999999775 5778999999
Q ss_pred EEeeCCCCHHHHHHHHHhcCcceecCChHHHHHHHcCCCCcccccc
Q 046637 252 NVCQRTVNAKEIFDNITRHKVTHFGGAPTVLNMIANAPPVFENRFR 297 (301)
Q Consensus 252 ~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~ 297 (301)
+++.+.+++..+++.++++++|++.++|++++.+++.......+++
T Consensus 219 ~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~ 264 (496)
T PRK06839 219 IIVPRKFEPTKALSMIEKHKVTVVMGVPTIHQALINCSKFETTNLQ 264 (496)
T ss_pred EEEccCCCHHHHHHHHHhhCCeEEEehHHHHHHHHhCcccccCCCc
Confidence 9998899999999999999999999999999999987665554444
|
|
| >PRK07638 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-36 Score=274.81 Aligned_cols=249 Identities=16% Similarity=0.140 Sum_probs=210.0
Q ss_pred CCHHHHHHHHhhhcCCccEEEECCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHhhhccceeee
Q 046637 14 LTPISFLERSAVVYRDRPSVVYGDVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAGAVLCT 93 (301)
Q Consensus 14 ~~~~~~l~~~~~~~~~~~al~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~ 93 (301)
|++.+.|++.++++||++|+++.++.+||.|+.+++.++|..|.+.|. +|++|+|+++|++++++++|||+++|++++|
T Consensus 1 ~~~~~~~~~~a~~~p~~~a~~~~~~~~Ty~~l~~~~~~~a~~L~~~~~-~~~~v~i~~~~~~~~~~~~la~~~~G~~~v~ 79 (487)
T PRK07638 1 MGITKEYKKHASLQPNKIAIKENDRVLTYKDWFESVCKVANWLNEKES-KNKTIAILLENRIEFLQLFAGAAMAGWTCVP 79 (487)
T ss_pred CChHHHHHHHHHhCCCCeEEecCCcEeeHHHHHHHHHHHHHHHHHhCC-CCCEEEEEcCCCHHHHHHHHHHHHcCeEEEe
Confidence 578899999999999999999999999999999999999999999984 8999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHhcCceEEEEcCCchhhHHHHHHHhccccCCCCceEEccCCCCCCcccccCCCCccHHHHHhhccc
Q 046637 94 LNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVASSSGNLEYESLLAIGKL 173 (301)
Q Consensus 94 l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (301)
+++.++.+++.++++.+++++++++......+... . ..++.++. +.+.......
T Consensus 80 l~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~---------~-~~~~~~~~----------------~~~~~~~~~~ 133 (487)
T PRK07638 80 LDIKWKQDELKERLAISNADMIVTERYKLNDLPDE---------E-GRVIEIDE----------------WKRMIEKYLP 133 (487)
T ss_pred cCccCCHHHHHHHHHhCCCCEEEEecccccchhhc---------c-ceEEEehh----------------hhhhhhhccc
Confidence 99999999999999999999999987654332210 1 12222221 1111111111
Q ss_pred cccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhhCCCCCEEEEeccchhhhhhHHHHHHHHhCCeEE
Q 046637 174 REVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPTYLWCVPMFHCNGWCLTWAVAAQGGTNV 253 (301)
Q Consensus 174 ~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~h~~g~~~~~~~l~~g~~~v 253 (301)
.........+++++|+|||||||.||||+++|.+++.++......+++.++|+++...|++|..++...+.++..|++++
T Consensus 134 ~~~~~~~~~~~~a~i~~TSGtTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~l~~~~~~l~~g~~~~ 213 (487)
T PRK07638 134 TYAPIENVQNAPFYMGFTSGSTGKPKAFLRAQQSWLHSFDCNVHDFHMKREDSVLIAGTLVHSLFLYGAISTLYVGQTVH 213 (487)
T ss_pred cccccccCCCCcEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhcCcCCCCEEEEeecchHHHHHHHHHHHHccCcEEE
Confidence 11111233467899999999999999999999999988888878888899999999999999988777888999999999
Q ss_pred eeCCCCHHHHHHHHHhcCcceecCChHHHHHHHcCC
Q 046637 254 CQRTVNAKEIFDNITRHKVTHFGGAPTVLNMIANAP 289 (301)
Q Consensus 254 ~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~ 289 (301)
+.+.+++..+++.++++++|++.++|+++..|.+..
T Consensus 214 ~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~ 249 (487)
T PRK07638 214 LMRKFIPNQVLDKLETENISVMYTVPTMLESLYKEN 249 (487)
T ss_pred EcCCCCHHHHHHHHHHcCCeEEEeCcHHHHHHHhCc
Confidence 999999999999999999999999999999999763
|
|
| >PRK05620 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-36 Score=278.51 Aligned_cols=274 Identities=25% Similarity=0.333 Sum_probs=223.6
Q ss_pred CCCCCHHHHHHHHhhhcCCccEEEECC---eeeeHHHHHHHHHHHHHHHHh-cCCCCCCEEEEEcCCCHHHHHHHHHhhh
Q 046637 11 YVPLTPISFLERSAVVYRDRPSVVYGD---VQYTWKETHQRCVKLASGLAH-LGISPGDVVAALAPNVPAMYELHFGVPM 86 (301)
Q Consensus 11 ~~~~~~~~~l~~~~~~~~~~~al~~~~---~~~Ty~el~~~~~~la~~L~~-~gv~~g~~V~i~~~n~~~~~~~~lA~~~ 86 (301)
+.++++.++|+..+..+|+++|+++++ +.+||+|+.+++.++|+.|.+ .|+++||+|+++++|+++++++++||++
T Consensus 7 ~~~~~~~~~l~~~a~~~~~~~a~~~~~~~~~~~Ty~el~~~~~~la~~L~~~~g~~~gd~V~~~~~n~~e~~~~~lA~~~ 86 (576)
T PRK05620 7 DVPLSLTRILEYGSTVHGDTTVTTWGGAEQEQTTFAAIGARAAALAHALHDELGITGDQRVGSMMYNCAEHLEVLFAVAC 86 (576)
T ss_pred cCCCcHHHHHHHHHHhCCCceEEEEcCCceEEEeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCHHHHHHHHHHHh
Confidence 345799999999999999999998754 799999999999999999986 7999999999999999999999999999
Q ss_pred ccceeeecCCCCCHHHHHHHHHhcCceEEEEcCCchhhHHHHHHHhccccCCCCceEEccCCCCCCc--ccccCCCCccH
Q 046637 87 AGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGEPVS--TVASSSGNLEY 164 (301)
Q Consensus 87 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~--~~~~~~~~~~~ 164 (301)
+|+++++++|..+.+++.++++.++++++|++....+.+.+.....+ ..+.++.++....... ..........|
T Consensus 87 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~----~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 162 (576)
T PRK05620 87 MGAVFNPLNKQLMNDQIVHIINHAEDEVIVADPRLAEQLGEILKECP----CVRAVVFIGPSDADSAAAHMPEGIKVYSY 162 (576)
T ss_pred cCCEEeecccccCHHHHHHHHhccCCcEEEEChhhHHHHHHHHhhCc----cccEEEEecCcccccchhccccccccccH
Confidence 99999999999999999999999999999999877776666655443 4455555543211100 00111223457
Q ss_pred HHHHhhccccccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHH--HHHhhCCCCCEEEEeccchhhhhhHHH
Q 046637 165 ESLLAIGKLREVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAA--ALFNEMGLMPTYLWCVPMFHCNGWCLT 242 (301)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~--~~~~~~~~~~~~l~~~p~~h~~g~~~~ 242 (301)
.++.+............++++++++|||||||.||||+++|.++....... ...+.+..++++++..|++|.+|+...
T Consensus 163 ~~l~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~ 242 (576)
T PRK05620 163 EALLDGRSTVYDWPELDETTAAAICYSTGTTGAPKGVVYSHRSLYLQSLSLRTTDSLAVTHGESFLCCVPIYHVLSWGVP 242 (576)
T ss_pred HHHhhcCCCcCCCCCCCccceeEEEECCCCCCCCceEEEEcHHHHHHHHHhhhhhhcCCCCCCeEEEeCChHHhhhhHHH
Confidence 777654333222234567899999999999999999999999986554432 234677889999999999999998888
Q ss_pred HHHHHhCCeEEeeC-CCCHHHHHHHHHhcCcceecCChHHHHHHHcC
Q 046637 243 WAVAAQGGTNVCQR-TVNAKEIFDNITRHKVTHFGGAPTVLNMIANA 288 (301)
Q Consensus 243 ~~~l~~g~~~v~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~ 288 (301)
+.++..|+++++.+ .+++..+++.++++++|+++.+|+++..++..
T Consensus 243 ~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~ 289 (576)
T PRK05620 243 LAAFMSGTPLVFPGPDLSAPTLAKIIATAMPRVAHGVPTLWIQLMVH 289 (576)
T ss_pred HHHHhcCceEEecCCCCCHHHHHHHHHHhcCceeeecCHHHHHHHHH
Confidence 88999999998875 57999999999999999999999999988764
|
|
| >TIGR03208 cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-36 Score=274.54 Aligned_cols=272 Identities=24% Similarity=0.250 Sum_probs=219.7
Q ss_pred CCCCCHHHHHHHHhhhcCCccEEEE------CCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHh
Q 046637 11 YVPLTPISFLERSAVVYRDRPSVVY------GDVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGV 84 (301)
Q Consensus 11 ~~~~~~~~~l~~~~~~~~~~~al~~------~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~ 84 (301)
|...++.+.|++.++.+|+++|+++ .++.+||+||.+++.++|..|.+.|+++|++|+++++|++++++++|||
T Consensus 19 ~~~~~~~~~~~~~~~~~p~~~a~~~~~~~~~~~~~~Ty~eL~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~~~~~~~la~ 98 (538)
T TIGR03208 19 WRDRTINDHFDAAVANCPDKPALTAYRDGHGAVRRFSYRELDCRVDRIAVGLARLGVGRGDVVSFQLPNRWEFTALYLAC 98 (538)
T ss_pred cccCcHHHHHHHHHHHCCCceEEEeecccCCCcceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHH
Confidence 4467899999999999999999986 2368999999999999999999999999999999999999999999999
Q ss_pred hhccceeeecCCCCCHHHHHHHHHhcCceEEEEcCCchh-----hHHHHHHHhccccCCCCceEEccCCCCCCcccccCC
Q 046637 85 PMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLP-----IAQGAFEILSKTSAKLPLLVLVPECGEPVSTVASSS 159 (301)
Q Consensus 85 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~-----~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 159 (301)
+++|++++|++|..+.+++.++++.++++++++++.... ...+.....+ ....++..+....
T Consensus 99 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~--------- 165 (538)
T TIGR03208 99 ARIGAVLNPLMPIFRERELSFMLNHADSKVFVVPSVFRGFDHAAMARELQSKLP----ALRQVVVIDGDGD--------- 165 (538)
T ss_pred HhcCEEEeccCcccCHHHHHHHHHhcCCeEEEEccccccccHHHHHHHHhccCC----cceEEEEecCCCC---------
Confidence 999999999999999999999999999999999876532 1111111111 3344555443211
Q ss_pred CCccHHHHHhhcccc--------ccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhhCCCCCEEEEec
Q 046637 160 GNLEYESLLAIGKLR--------EVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPTYLWCV 231 (301)
Q Consensus 160 ~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~ 231 (301)
..++.++...... .......++++++|+|||||||.||||+++|.++...+......+++..++++++..
T Consensus 166 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~ 243 (538)
T TIGR03208 166 --DSFDRVLMTPERDDTPDAAAILAGPRPSPDDVTQLIYTSGTTGEPKGVMHTANTLFSNIHPYAERLELGGGDVILMAS 243 (538)
T ss_pred --cCHHHHhhccccccccccccccccCCCCCCCeEEEEECCCCCCCCcEEEeehHHHHHHHHHHHhhcCCCCCCeEEEeC
Confidence 2233332211100 011235678999999999999999999999999999888888888888999999999
Q ss_pred cchhhhhhH-HHHHHHHhCCeEEeeCCCCHHHHHHHHHhcCcceecCChHHHHHHHcCCCCcccccc
Q 046637 232 PMFHCNGWC-LTWAVAAQGGTNVCQRTVNAKEIFDNITRHKVTHFGGAPTVLNMIANAPPVFENRFR 297 (301)
Q Consensus 232 p~~h~~g~~-~~~~~l~~g~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~ 297 (301)
|++|.+|+. .++.++..|+++++.+.+++..+++.++++++|++.++|+++..+.+.......+++
T Consensus 244 pl~h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~l~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~ 310 (538)
T TIGR03208 244 PMAHQTGFMYGLMMPLILNATAVLQDIWNPARAAELIRETGVTFTMASTPFLTDLCRAVKESGAPVP 310 (538)
T ss_pred CchhHHHHHHHHHHHHHcCCEEEecCccCHHHHHHHHHHhCCeEEecCHHHHHHHHhchhccCCCCC
Confidence 999999876 478889999999998889999999999999999999999999998865443333333
|
Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris. |
| >PRK07470 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-36 Score=273.39 Aligned_cols=274 Identities=25% Similarity=0.317 Sum_probs=221.8
Q ss_pred CCCCCCHHHHHHHHhhhcCCccEEEECCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHhhhccc
Q 046637 10 NYVPLTPISFLERSAVVYRDRPSVVYGDVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAGA 89 (301)
Q Consensus 10 ~~~~~~~~~~l~~~~~~~~~~~al~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~ 89 (301)
.-..+++.++|.+.++++|+++|+.+.++.+||+|+.+.+.++|..|.+.|+++|++|+++++|+++++++++||+++|+
T Consensus 3 ~~~~~~~~~~~~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~~a~~L~~~g~~~g~~v~i~~~~~~~~~~~~lA~~~~G~ 82 (528)
T PRK07470 3 SRRVMNLAHFLRQAARRFPDRIALVWGDRSWTWREIDARVDALAAALAARGVRKGDRILVHSRNCNQMFESMFAAFRLGA 82 (528)
T ss_pred cccCCCHHHHHHHHHHHCCCceEEEECCccccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHhCCe
Confidence 34578899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeecCCCCCHHHHHHHHHhcCceEEEEcCCchhhHHHHHHHhccccCCCCceEEccCCCCCCcccccCCCCccHHHHHh
Q 046637 90 VLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVASSSGNLEYESLLA 169 (301)
Q Consensus 90 ~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (301)
+++++++..+.+++.++++.++++++++++...+.......... ....++.++... ....+.++..
T Consensus 83 ~~v~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~----------~~~~~~~~~~ 148 (528)
T PRK07470 83 VWVPTNFRQTPDEVAYLAEASGARAMICHADFPEHAAAVRAASP----DLTHVVAIGGAR----------AGLDYEALVA 148 (528)
T ss_pred EEEecCccCCHHHHHHHHHhcCceEEEEcchhHHHHHHHHhhCC----cCceEEEeCCCc----------ccccHHHHHh
Confidence 99999999999999999999999999999877655554443322 344555544321 1134555544
Q ss_pred hcccc-ccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHh--hCCCCCEEEEeccchhhhhhHHHHHHH
Q 046637 170 IGKLR-EVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFN--EMGLMPTYLWCVPMFHCNGWCLTWAVA 246 (301)
Q Consensus 170 ~~~~~-~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~--~~~~~~~~l~~~p~~h~~g~~~~~~~l 246 (301)
..... .......++++++|+|||||||.||+|.++|.++........... +...+|+++...|++|.+|+...+ .+
T Consensus 149 ~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~-~~ 227 (528)
T PRK07470 149 RHLGARVANAAVDHDDPCWFFFTSGTTGRPKAAVLTHGQMAFVITNHLADLMPGTTEQDASLVVAPLSHGAGIHQLC-QV 227 (528)
T ss_pred cCCCCCCCcccCCCCCeEEEEeCCCCCCCCcEEEEehhhHHHHHHHHHHHhccCCCcccEEEEeccchhHHHHHHHH-HH
Confidence 32211 122345678999999999999999999999999976554433222 456789999999999999987544 56
Q ss_pred HhCCeEEeeC--CCCHHHHHHHHHhcCcceecCChHHHHHHHcCCCCccccccC
Q 046637 247 AQGGTNVCQR--TVNAKEIFDNITRHKVTHFGGAPTVLNMIANAPPVFENRFRG 298 (301)
Q Consensus 247 ~~g~~~v~~~--~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~ 298 (301)
..|++.++.+ .++++.+++.++++++|++.++|++++.+.+.+.....++++
T Consensus 228 ~~g~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~ 281 (528)
T PRK07470 228 ARGAATVLLPSERFDPAEVWALVERHRVTNLFTVPTILKMLVEHPAVDRYDHSS 281 (528)
T ss_pred hcCceEEEecccCcCHHHHHHHHHhcCCeEEechHHHHHHHHhCcCcCCCCCcc
Confidence 7788877765 578999999999999999999999999999877655555443
|
|
| >PRK13388 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-36 Score=275.94 Aligned_cols=256 Identities=26% Similarity=0.304 Sum_probs=211.8
Q ss_pred CCCHHHHHHHHhhhcCCccEEEECCeeeeHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEcCCCHHHHHHHHHhhhcccee
Q 046637 13 PLTPISFLERSAVVYRDRPSVVYGDVQYTWKETHQRCVKLASGLAHLGI-SPGDVVAALAPNVPAMYELHFGVPMAGAVL 91 (301)
Q Consensus 13 ~~~~~~~l~~~~~~~~~~~al~~~~~~~Ty~el~~~~~~la~~L~~~gv-~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~ 91 (301)
+.++.++|..++ .|+++|+++.+..+||+||.++++++|..|.+.|+ ++|++|+++++|+++++++++||+++|+++
T Consensus 2 ~~~~~~~l~~~~--~p~~~Al~~~~~~lTy~el~~~~~~la~~L~~~g~~~~~~~V~i~~~n~~~~v~~~lA~~~~Ga~~ 79 (540)
T PRK13388 2 RDTIAQLLRDRA--GDDTIAVRYGDRTWTWREVLAEAAARAAALIALADPDRPLHVGVLLGNTPEMLFWLAAAALGGYVL 79 (540)
T ss_pred chhHHHHHHhhc--cCCceEEEECCceeeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCcHHHHHHHHHHhCCCEE
Confidence 356788887764 69999999999999999999999999999999999 899999999999999999999999999999
Q ss_pred eecCCCCCHHHHHHHHHhcCceEEEEcCCchhhHHHHHHHhccccCCCCceEEccCCCCCCcccccCCCCccHHHHHhhc
Q 046637 92 CTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVASSSGNLEYESLLAIG 171 (301)
Q Consensus 92 v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (301)
+|++|.++.+++.++++.+++++++++.+....+.+.. .+ .. .++.++. ..+.+++...
T Consensus 80 v~l~p~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~--~~----~~-~~i~~~~--------------~~~~~~~~~~ 138 (540)
T PRK13388 80 VGLNTTRRGAALAADIRRADCQLLVTDAEHRPLLDGLD--LP----GV-RVLDVDT--------------PAYAELVAAA 138 (540)
T ss_pred EEecccCChHHHHHHHHhcCCCEEEEChhhhHHHHhhc--cc----Cc-eEEEccc--------------hhhhhhhccc
Confidence 99999999999999999999999999876654433321 11 22 2333322 1222332211
Q ss_pred cccccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhhCCCCCEEEEeccchhhhhhHH-HHHHHHhCC
Q 046637 172 KLREVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPTYLWCVPMFHCNGWCL-TWAVAAQGG 250 (301)
Q Consensus 172 ~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~h~~g~~~-~~~~l~~g~ 250 (301)
..........++++++++|||||||.||||.++|.++..........+++..+|+++...|++|.+|+.. ++.++..|+
T Consensus 139 ~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~l~~G~ 218 (540)
T PRK13388 139 GALTPHREVDAMDPFMLIFTSGTTGAPKAVRCSHGRLAFAGRALTERFGLTRDDVCYVSMPLFHSNAVMAGWAPAVASGA 218 (540)
T ss_pred cCcCCCCCCCCCCeEEEEECCCCCCCCCEEEecHHHHHHHHHHHHHHhCCCCCCEEEEeeCchhhcchHHHHHHHHHcCc
Confidence 1111112356789999999999999999999999999888887778888999999999999999999875 455788999
Q ss_pred eEEeeCCCCHHHHHHHHHhcCcceecCChHHHHHHHcCCCC
Q 046637 251 TNVCQRTVNAKEIFDNITRHKVTHFGGAPTVLNMIANAPPV 291 (301)
Q Consensus 251 ~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~ 291 (301)
++++.+.+++..+++.++++++|++..+|..+..++..+..
T Consensus 219 ~~v~~~~~~~~~~~~~i~~~~vt~~~~~p~~l~~l~~~~~~ 259 (540)
T PRK13388 219 AVALPAKFSASGFLDDVRRYGATYFNYVGKPLAYILATPER 259 (540)
T ss_pred EEEECCCCCHHHHHHHHHHhCCeEEEehHHHHHHHHhCCCC
Confidence 99998889999999999999999999999999999876543
|
|
| >PRK06178 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=273.98 Aligned_cols=282 Identities=21% Similarity=0.180 Sum_probs=221.6
Q ss_pred CCCCCCHHHHHHHHhhhcCCccEEEECCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHhhhccc
Q 046637 10 NYVPLTPISFLERSAVVYRDRPSVVYGDVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAGA 89 (301)
Q Consensus 10 ~~~~~~~~~~l~~~~~~~~~~~al~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~ 89 (301)
+.+..++.+.|+..++.+||++|+.+.++.+||+||.+++.++|..|.+.|+++|++|+++++|++++++++|||+++|+
T Consensus 29 ~~~~~~l~~~l~~~a~~~p~~~al~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~ 108 (567)
T PRK06178 29 PHGERPLTEYLRAWARERPQRPAIIFYGHVITYAELDELSDRFAALLRQRGVGAGDRVAVFLPNCPQFHIVFFGILKLGA 108 (567)
T ss_pred CcCcccHHHHHHHHHHHCCCceEEEECCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCcHHHHHHHHHHHhCe
Confidence 34457899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeecCCCCCHHHHHHHHHhcCceEEEEcCCchhhHHHHHHHhccccCCCCceEEccCCCCCCc--c----cccC---CC
Q 046637 90 VLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGEPVS--T----VASS---SG 160 (301)
Q Consensus 90 ~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~--~----~~~~---~~ 160 (301)
+++|++|..+.+++.++++.++++++++++...+.+.+..... ....++..+....... . .... ..
T Consensus 109 ~~v~l~p~~~~~~~~~~l~~~~~~~ii~~~~~~~~l~~~~~~~-----~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (567)
T PRK06178 109 VHVPVSPLFREHELSYELNDAGAEVLLALDQLAPVVEQVRAET-----SLRHVIVTSLADVLPAEPTLPLPDSLRAPRLA 183 (567)
T ss_pred EEeecCCCCCHHHHHHHHHhcCCcEEEEccchHHHHHHhhccC-----CcceEEEecccccccccccccccccccccccc
Confidence 9999999999999999999999999999988766655543321 2344443321110000 0 0000 00
Q ss_pred CccHHHHHhhcc---ccccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHH-HhhCCCCCEEEEeccchhh
Q 046637 161 NLEYESLLAIGK---LREVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAAL-FNEMGLMPTYLWCVPMFHC 236 (301)
Q Consensus 161 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~-~~~~~~~~~~l~~~p~~h~ 236 (301)
...+.++..... .........++++++|+|||||||.||+|++||.++..+...... ......++++++.+|++|.
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~ 263 (567)
T PRK06178 184 AAGAIDLLPALRACTAPVPLPPPALDALAALNYTGGTTGMPKGCEHTQRDMVYTAAAAYAVAVVGGEDSVFLSFLPEFWI 263 (567)
T ss_pred ccccccHHHHhhccccccccCCCCCCCeEEEEeCCCCCCCCceEEeccHHHHHHHHHHHHHhccCCCCcEEEEecchHHH
Confidence 011222222111 111223356789999999999999999999999999876554433 3567788999999999999
Q ss_pred hhhH-HHHHHHHhCCeEEeeCCCCHHHHHHHHHhcCcceecCChHHHHHHHcCCCCccccc
Q 046637 237 NGWC-LTWAVAAQGGTNVCQRTVNAKEIFDNITRHKVTHFGGAPTVLNMIANAPPVFENRF 296 (301)
Q Consensus 237 ~g~~-~~~~~l~~g~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l 296 (301)
+|+. .++.++..|+++++.+++++..+++.++++++|.+..+|..+..+++.+.....++
T Consensus 264 ~g~~~~~~~~l~~G~~~~l~~~~~~~~~~~~i~~~~~t~~~~~~~~~~~l~~~~~~~~~~l 324 (567)
T PRK06178 264 AGENFGLLFPLFSGATLVLLARWDAVAFMAAVERYRVTRTVMLVDNAVELMDHPRFAEYDL 324 (567)
T ss_pred HHHHHHHHHHHHcCceEEEeCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhCCCCCCCCc
Confidence 9976 47778999999999999999999999999999999999999999987655444443
|
|
| >PRK04319 acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-36 Score=277.03 Aligned_cols=264 Identities=26% Similarity=0.314 Sum_probs=216.7
Q ss_pred CCHH-HHHHHHhh-hcCCccEEEECC----eeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHhhhc
Q 046637 14 LTPI-SFLERSAV-VYRDRPSVVYGD----VQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMA 87 (301)
Q Consensus 14 ~~~~-~~l~~~~~-~~~~~~al~~~~----~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~ 87 (301)
.++. +.+.+.++ .+|+++|+.+.+ +.+||+||.+++.++|.+|.+.|+++||+|+++++|++++++++|||+++
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~la~~~~ 121 (570)
T PRK04319 42 VNIAYEAIDRHADGGRKDKVALRYLDASRKEKYTYKELKELSNKFANVLKELGVEKGDRVFIFMPRIPELYFALLGALKN 121 (570)
T ss_pred eeHHHHHHHHhhccCCCCceEEEEECCCCceeecHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHHc
Confidence 3444 67888776 589999999753 68999999999999999999999999999999999999999999999999
Q ss_pred cceeeecCCCCCHHHHHHHHHhcCceEEEEcCCchhhHHHHHHHhccccCCCCceEEccCCCCCCcccccCCCCccHHHH
Q 046637 88 GAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVASSSGNLEYESL 167 (301)
Q Consensus 88 G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (301)
|++++|+++.++.+++.++++.+++++++++......... ...+ .++.++.++.... ...+...+.++
T Consensus 122 G~v~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~--~~~~----~~~~~~~~~~~~~------~~~~~~~~~~~ 189 (570)
T PRK04319 122 GAIVGPLFEAFMEEAVRDRLEDSEAKVLITTPALLERKPA--DDLP----SLKHVLLVGEDVE------EGPGTLDFNAL 189 (570)
T ss_pred CcEEcccccccCHHHHHHHHHccCCcEEEEChhhhhccch--hcCC----CceEEEEECCCcC------CCcCccCHHHH
Confidence 9999999999999999999999999999998765443221 1111 3445555543221 11223456665
Q ss_pred HhhccccccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhhCCCCCEEEEeccchhhhhhH-HHHHHH
Q 046637 168 LAIGKLREVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPTYLWCVPMFHCNGWC-LTWAVA 246 (301)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~h~~g~~-~~~~~l 246 (301)
..............++++++|+|||||||.||||+++|.+++.+.......+++.++|++++..|++|.+|.. .++.++
T Consensus 190 ~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~~~~~l 269 (570)
T PRK04319 190 MEQASDEFDIEWTDREDGAILHYTSGSTGKPKGVLHVHNAMLQHYQTGKYVLDLHEDDVYWCTADPGWVTGTSYGIFAPW 269 (570)
T ss_pred HhhcCCcCCccccCCCCCEEEEeCCCCCCCCCEEEEecHHHHHHHHHHHHhcCCCCCceEEecCChHHhhCchHHHHHHH
Confidence 5443332222335678999999999999999999999999998888777788889999999999999999866 478889
Q ss_pred HhCCeEEeeC-CCCHHHHHHHHHhcCcceecCChHHHHHHHcCC
Q 046637 247 AQGGTNVCQR-TVNAKEIFDNITRHKVTHFGGAPTVLNMIANAP 289 (301)
Q Consensus 247 ~~g~~~v~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~ 289 (301)
..|+++++.+ .+++..+++.++++++|+++++|++++.|++..
T Consensus 270 ~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~ 313 (570)
T PRK04319 270 LNGATNVIDGGRFSPERWYRILEDYKVTVWYTAPTAIRMLMGAG 313 (570)
T ss_pred hcCceEEEECCCCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhcC
Confidence 9999998875 689999999999999999999999999998764
|
|
| >PRK06188 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-36 Score=272.63 Aligned_cols=273 Identities=21% Similarity=0.263 Sum_probs=222.5
Q ss_pred CCCCCHHHHHHHHhhhcCCccEEEECCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHhhhccce
Q 046637 11 YVPLTPISFLERSAVVYRDRPSVVYGDVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAGAV 90 (301)
Q Consensus 11 ~~~~~~~~~l~~~~~~~~~~~al~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~ 90 (301)
.++.++.++|.+.++++|+++|+++.++.+||+||.+.+.+++..|.+.|+++|++|+++++|++++++++|||++.|++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~Ty~~l~~~~~~~a~~L~~~gv~~~~~V~i~~~~~~~~~~~~la~~~~G~~ 88 (524)
T PRK06188 9 HSGATYGHLLVSALKRYPDRPALVLGDTRLTYGQLADRISRYIQAFEALGLGTGDAVALLSLNRPEVLMAIGAAQLAGLR 88 (524)
T ss_pred cCCccHHHHHHHHHHHCCCCeEEEECCCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhCCE
Confidence 34668999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecCCCCCHHHHHHHHHhcCceEEEEcCC-chhhHHHHHHHhccccCCCCceEEccCCCCCCcccccCCCCccHHHHHh
Q 046637 91 LCTLNTRHDSAMVSVLLRHSEAKIIFVDYQ-LLPIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVASSSGNLEYESLLA 169 (301)
Q Consensus 91 ~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (301)
+++++|..+.+++.++++.++++.+++++. ......+...... ....++.++.... .....+...
T Consensus 89 ~v~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~----------~~~~~~~~~ 154 (524)
T PRK06188 89 RTALHPLGSLDDHAYVLEDAGISTLIVDPAPFVERALALLARVP----SLKHVLTLGPVPD----------GVDLLAAAA 154 (524)
T ss_pred EEecccCCCHHHHHHHHHhcCceEEEEecchhhHHHHHHhhhcC----CceEEEEeCCccc----------hhhHHHhhh
Confidence 999999999999999999999999999876 3333333222221 3344444433211 001111111
Q ss_pred hccccccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhhCCCCCEEEEeccchhhhhhHHHHHHHHhC
Q 046637 170 IGKLREVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPTYLWCVPMFHCNGWCLTWAVAAQG 249 (301)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~h~~g~~~~~~~l~~g 249 (301)
............++++++|+|||||||.||+|.++|.++..........+++..++++++..|++|.+|+. .+.++..|
T Consensus 155 ~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~-~~~~l~~G 233 (524)
T PRK06188 155 KFGPAPLVAAALPPDIAGLAYTGGTTGKPKGVMGTHRSIATMAQIQLAEWEWPADPRFLMCTPLSHAGGAF-FLPTLLRG 233 (524)
T ss_pred ccCcccccccCCCCCeEEEEeCCCCCCCCceeeeehHHHHHHHHHHHhhcCCCcCcEEEEecCchhhhhHH-HHHHHHcC
Confidence 11111111223445699999999999999999999999999888888888899999999999999998875 56778999
Q ss_pred CeEEeeCCCCHHHHHHHHHhcCcceecCChHHHHHHHcCCCCccccccC
Q 046637 250 GTNVCQRTVNAKEIFDNITRHKVTHFGGAPTVLNMIANAPPVFENRFRG 298 (301)
Q Consensus 250 ~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~ 298 (301)
+++++.+.+++..+++.++++++|++.++|+++..+++.+.....++++
T Consensus 234 ~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~ 282 (524)
T PRK06188 234 GTVIVLAKFDPAEVLRAIEEQRITATFLVPTMIYALLDHPDLRTRDLSS 282 (524)
T ss_pred CEEEEcCCCCHHHHHHHHHHhCCEEEEehHHHHHHHHhCcCccCCCCcc
Confidence 9999999999999999999999999999999999999887665555544
|
|
| >PRK07008 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-36 Score=273.72 Aligned_cols=278 Identities=29% Similarity=0.377 Sum_probs=223.2
Q ss_pred CCHHHHHHHHhhhcCCccEEEEC--C--eeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHhhhccc
Q 046637 14 LTPISFLERSAVVYRDRPSVVYG--D--VQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAGA 89 (301)
Q Consensus 14 ~~~~~~l~~~~~~~~~~~al~~~--~--~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~ 89 (301)
.++.++|+..++.+|+++++.+. + +.+||.||.++++++|++|.+.|+++||+|+++++|+++++++++||+++|+
T Consensus 10 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~Ty~el~~~~~~~a~~L~~~g~~~~d~v~i~~~~~~~~~~~~la~~~~G~ 89 (539)
T PRK07008 10 LLISSLIAHAARHAGDTEIVSRRVEGDIHRYTYRDCERRAKQLAQALAALGVEPGDRVGTLAWNGYRHLEAYYGVSGSGA 89 (539)
T ss_pred CCHHHHHHHHHhhCCCceEEEeeccCcceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHhcCc
Confidence 46889999999999999998752 2 5899999999999999999999999999999999999999999999999999
Q ss_pred eeeecCCCCCHHHHHHHHHhcCceEEEEcCCchhhHHHHHHHhccccCCCCceEEccCCCCCCcccccCCCCccHHHHHh
Q 046637 90 VLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVASSSGNLEYESLLA 169 (301)
Q Consensus 90 ~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (301)
+++|++|..+.+++..+++.+++++++++.+..+.+.+...... .++.++.+++...... .......++++..
T Consensus 90 ~~v~l~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~ 162 (539)
T PRK07008 90 VCHTINPRLFPEQIAYIVNHAEDRYVLFDLTFLPLVDALAPQCP----NVKGWVAMTDAAHLPA---GSTPLLCYETLVG 162 (539)
T ss_pred EEeecccccCHHHHHHHHhccCCcEEEEcchhHHHHHHHHhhCC----CceEEEEEccCCcccc---CCcccccHHHHhc
Confidence 99999999999999999999999999999877666555544333 4445554443321110 0122355666654
Q ss_pred hccccccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHH--HHHHHhhCCCCCEEEEeccchhhhhhHHHHHHHH
Q 046637 170 IGKLREVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSL--AAALFNEMGLMPTYLWCVPMFHCNGWCLTWAVAA 247 (301)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~--~~~~~~~~~~~~~~l~~~p~~h~~g~~~~~~~l~ 247 (301)
............++++++++|||||||.||+|++||.+++.+.. .....+++..+|++++..|++|.+++...+.++.
T Consensus 163 ~~~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~l~ 242 (539)
T PRK07008 163 AQDGDYDWPRFDENQASSLCYTSGTTGNPKGALYSHRSTVLHAYGAALPDAMGLSARDAVLPVVPMFHVNAWGLPYSAPL 242 (539)
T ss_pred ccCCCcCcccCCcccceEEEECCCCCCCCcEEEEecHHHHHHHHHhhcccccCCCCCceEEecCchHHhhhHHHHHHHHh
Confidence 33322222345678899999999999999999999999865432 2334567788999999999999988877788899
Q ss_pred hCCeEEeeC-CCCHHHHHHHHHhcCcceecCChHHHHHHHcCCCCccccccC
Q 046637 248 QGGTNVCQR-TVNAKEIFDNITRHKVTHFGGAPTVLNMIANAPPVFENRFRG 298 (301)
Q Consensus 248 ~g~~~v~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~ 298 (301)
.|+++++.+ .+++..+++.++++++|++.++|+++..+++.......++++
T Consensus 243 ~G~~~~~~~~~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~ 294 (539)
T PRK07008 243 TGAKLVLPGPDLDGKSLYELIEAERVTFSAGVPTVWLGLLNHMREAGLRFST 294 (539)
T ss_pred cCceEEEecCCcCHHHHHHHHHHcCCEEEEechHHHHHHHhcccccCCCccc
Confidence 999999874 679999999999999999999999999999876655555544
|
|
| >PRK06018 putative acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=272.49 Aligned_cols=279 Identities=25% Similarity=0.358 Sum_probs=223.1
Q ss_pred CCCCHHHHHHHHhhhcCCccEEEE--CC--eeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHhhhc
Q 046637 12 VPLTPISFLERSAVVYRDRPSVVY--GD--VQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMA 87 (301)
Q Consensus 12 ~~~~~~~~l~~~~~~~~~~~al~~--~~--~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~ 87 (301)
.+.++.++|+.+++++||+++++. .+ +++||+||.+.++++|+.|.+.|+++||+|+++++|++++++++|||+++
T Consensus 8 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~Ty~el~~~v~~la~~L~~~g~~~gd~v~i~~~~~~~~~~~~la~~~~ 87 (542)
T PRK06018 8 WPLLCHRIIDHAARIHGNREVVTRSVEGPIVRTTYAQIHDRALKVSQALDRDGIKLGDRVATIAWNTWRHLEAWYGIMGI 87 (542)
T ss_pred CCCCHHHHHHHHHHhCCCceEEEeeccCCceEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHHHhc
Confidence 356999999999999999999985 23 68999999999999999999999999999999999999999999999999
Q ss_pred cceeeecCCCCCHHHHHHHHHhcCceEEEEcCCchhhHHHHHHHhccccCCCCceEEccCCCCCCcccccCCCCccHHHH
Q 046637 88 GAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVASSSGNLEYESL 167 (301)
Q Consensus 88 G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (301)
|++++|++|..+.+++.++++.++++.++++.+....+.+.....+ ..+.++.+.+.... ......+...+.++
T Consensus 88 G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 161 (542)
T PRK06018 88 GAICHTVNPRLFPEQIAWIINHAEDRVVITDLTFVPILEKIADKLP----SVERYVVLTDAAHM--PQTTLKNAVAYEEW 161 (542)
T ss_pred CeEeeccccccCHHHHHHHHhccCCCEEEEccccHHHHHHHHhhCC----CccEEEEecccccc--cccCccccccHHHH
Confidence 9999999999999999999999999999999888777666554443 44555554432111 11111233456665
Q ss_pred HhhccccccCCCCCCCCceEEEeccCCCCCCCeeeechHHHH-HHH-HHHHHHhhCCCCCEEEEeccchhhhhhHHHHHH
Q 046637 168 LAIGKLREVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAY-LNS-LAAALFNEMGLMPTYLWCVPMFHCNGWCLTWAV 245 (301)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~-~~~-~~~~~~~~~~~~~~~l~~~p~~h~~g~~~~~~~ 245 (301)
...............+++++|+|||||||.||||.+||.+++ ... ......+++..+|+++...|++|.+++...+.+
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~h~~~~~~~~~~ 241 (542)
T PRK06018 162 IAEADGDFAWKTFDENTAAGMCYTSGTTGDPKGVLYSHRSNVLHALMANNGDALGTSAADTMLPVVPLFHANSWGIAFSA 241 (542)
T ss_pred hccCCcccCcccCCccceeeEEecCCCCCCCcEEEEechhHHHHHHHHhhhhhcCCCCCCEEEEecCHHHHhhhHHHHhh
Confidence 544332222233566789999999999999999999999743 222 223445677889999999999999998877788
Q ss_pred HHhCCeEEeeC-CCCHHHHHHHHHhcCcceecCChHHHHHHHcCCCCccccc
Q 046637 246 AAQGGTNVCQR-TVNAKEIFDNITRHKVTHFGGAPTVLNMIANAPPVFENRF 296 (301)
Q Consensus 246 l~~g~~~v~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l 296 (301)
+..|+++++.. .+++..+++.++++++|++.++|++++.|.+.......++
T Consensus 242 ~~~g~~~v~~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~~~ 293 (542)
T PRK06018 242 PSMGTKLVMPGAKLDGASVYELLDTEKVTFTAGVPTVWLMLLQYMEKEGLKL 293 (542)
T ss_pred hhcCceEEccCcCCCHHHHHHHHHhcCCceeecCcHHHHHHHhcccccCCCc
Confidence 99999998874 6789999999999999999999999999987655443343
|
|
| >TIGR01217 ac_ac_CoA_syn acetoacetyl-CoA synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-35 Score=277.68 Aligned_cols=265 Identities=21% Similarity=0.263 Sum_probs=201.3
Q ss_pred HHHHHhhhcCCccEEEECC-----eeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHhhhccceeee
Q 046637 19 FLERSAVVYRDRPSVVYGD-----VQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAGAVLCT 93 (301)
Q Consensus 19 ~l~~~~~~~~~~~al~~~~-----~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~ 93 (301)
+.+...+..++++|+++.+ +.+||+||.+++.++|..|+++|+++||+|+++++|++++++++|||+++|++++|
T Consensus 89 ~~~~~~~~~~~~~a~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GdrV~i~~~n~~e~~~~~lA~~~~Gav~vp 168 (652)
T TIGR01217 89 YAENLLRAAGTEPALLYVDETHEPAPVTWAELRRQVASLAAALRALGVRPGDRVSGYLPNIPQAVVAMLATASVGAIWSS 168 (652)
T ss_pred HHHHHhccCCCCeEEEEECCCCCeeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHhCeEEEe
Confidence 3334444467899998843 58999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHhcCceEEEEcCCch---------hhHHHHHHHhccccCCCCceEEccCCCCCCcccccCCCCccH
Q 046637 94 LNTRHDSAMVSVLLRHSEAKIIFVDYQLL---------PIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVASSSGNLEY 164 (301)
Q Consensus 94 l~~~~~~~~l~~~l~~~~~~~vi~~~~~~---------~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 164 (301)
+++.++.+++.+++++++++++|+++... ..+.+.....+ .++.+++++.............+...|
T Consensus 169 ~~~~~~~~~l~~~l~~~~~k~li~~~~~~~~~k~~~~~~~~~~~~~~~~----~~~~~i~~~~~~~~~~~~~~~~~~~~~ 244 (652)
T TIGR01217 169 CSPDFGARGVLDRFQQIEPKLLFTVDGYRYNGKEHDRRDKVAEVRKELP----TLRAVVHIPYLGPRETEAPKIDGALDL 244 (652)
T ss_pred cCCCCCHHHHHHHHHhcCCcEEEEccccccCCcccchHHHHHHHHhcCC----CccEEEEEeCCCCcccccccccCcccH
Confidence 99999999999999999999999987542 23333333222 455566554322100000011123456
Q ss_pred HHHHhhcccc-ccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHH-HHHHHHHHhhCCCCCEEEEeccchhhhhhHHH
Q 046637 165 ESLLAIGKLR-EVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYL-NSLAAALFNEMGLMPTYLWCVPMFHCNGWCLT 242 (301)
Q Consensus 165 ~~~~~~~~~~-~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~-~~~~~~~~~~~~~~~~~l~~~p~~h~~g~~~~ 242 (301)
+++....... ........+++++|+|||||||.||||+++|.+++. ........+++.++|++++..|+.|+.+ ..+
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~d~~~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~-~~~ 323 (652)
T TIGR01217 245 EDFTAAAQAAELVFEQLPFDHPLWILFSSGTTGLPKCIVHSAGGTLVQHLKEHGLHCDLGPGDRLFYYTTTGWMMW-NWL 323 (652)
T ss_pred HHHHhcccCCCCCceecCCCCCEEEEEcCCCCCCCCeEEecccHHHHHHHHHHHhccCCCCCcEEEEeCCcchhhh-HHH
Confidence 7665442111 111234568999999999999999999999998654 3444555678889999999999998754 335
Q ss_pred HHHHHhCCeEEeeCC----CCHHHHHHHHHhcCcceecCChHHHHHHHcC
Q 046637 243 WAVAAQGGTNVCQRT----VNAKEIFDNITRHKVTHFGGAPTVLNMIANA 288 (301)
Q Consensus 243 ~~~l~~g~~~v~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~ 288 (301)
+.++..|+++++.++ +++..+++.++++++|++.++|++++.+.+.
T Consensus 324 ~~~l~~G~t~vl~~g~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~ 373 (652)
T TIGR01217 324 VSGLATGATLVLYDGSPGFPATNVLWDIAERTGATLFGTSAKYVMACRKA 373 (652)
T ss_pred HHHHhcCcEEEEECCCCCCCCchHHHHHHHHhCCeEEecCHHHHHHHHhc
Confidence 678999999999852 3788999999999999999988888887654
|
This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway. |
| >PRK08315 AMP-binding domain protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-35 Score=272.04 Aligned_cols=285 Identities=26% Similarity=0.376 Sum_probs=226.0
Q ss_pred ccCCCCCCCCHHHHHHHHhhhcCCccEEEE--CCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHH
Q 046637 6 RCSANYVPLTPISFLERSAVVYRDRPSVVY--GDVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFG 83 (301)
Q Consensus 6 ~~~~~~~~~~~~~~l~~~~~~~~~~~al~~--~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA 83 (301)
...++....++.+.|.+.++++|+++|+++ .++.+||+||.+.+.++|..|.+.|+++|++|+++++|++++++++||
T Consensus 8 ~~~~~~~~~~l~~~l~~~~~~~~~~~ai~~~~~~~~~Ty~~l~~~~~~~a~~L~~~gi~~g~~V~i~~~~~~~~~~~~la 87 (559)
T PRK08315 8 PTDVPLLEQTIGQLLDRTAARYPDREALVYRDQGLRWTYREFNEEVDALAKGLLALGIEKGDRVGIWAPNVPEWVLTQFA 87 (559)
T ss_pred CCcCChhhccHHHHHHHHHHHCCCCeEEEEcCCCeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHHH
Confidence 445667788999999999999999999998 457899999999999999999999999999999999999999999999
Q ss_pred hhhccceeeecCCCCCHHHHHHHHHhcCceEEEEcCCchh-----hHHHHHHHhcc---------ccCCCCceEEccCCC
Q 046637 84 VPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLP-----IAQGAFEILSK---------TSAKLPLLVLVPECG 149 (301)
Q Consensus 84 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~-----~~~~~~~~~~~---------~~~~~~~i~~~~~~~ 149 (301)
|+++|++++|++|..+.+++..+++.++++++++++.... .+.+....... ..+..+.++.++...
T Consensus 88 ~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (559)
T PRK08315 88 TAKIGAILVTINPAYRLSELEYALNQSGCKALIAADGFKDSDYVAMLYELAPELATCEPGQLQSARLPELRRVIFLGDEK 167 (559)
T ss_pred HHHhCeEEEecCccCCHHHHHHHHHhcCCCEEEEeccccccchHHHHHHhhhhhhcccccccccccCCCceeEEeecccC
Confidence 9999999999999999999999999999999999875432 12222111100 001123333333221
Q ss_pred CCCcccccCCCCccHHHHHhhcccc------ccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhhCCC
Q 046637 150 EPVSTVASSSGNLEYESLLAIGKLR------EVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGL 223 (301)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~ 223 (301)
..+...+.++....... ........+++++++|||||||.||+|.+||.++..++......+++.+
T Consensus 168 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~~~ 239 (559)
T PRK08315 168 --------HPGMLNFDELLALGRAVDDAELAARQATLDPDDPINIQYTSGTTGFPKGATLTHRNILNNGYFIGEAMKLTE 239 (559)
T ss_pred --------CcccccHHHHHhhccccccccccchhccCCCCCcEEEEEcCCCCCCcceEEeeHHHHHHHHHHHHHhcCCCC
Confidence 11223455544322111 1122345688999999999999999999999999988888888889999
Q ss_pred CCEEEEeccchhhhhhHH-HHHHHHhCCeEEee-CCCCHHHHHHHHHhcCcceecCChHHHHHHHcCCCCccccccC
Q 046637 224 MPTYLWCVPMFHCNGWCL-TWAVAAQGGTNVCQ-RTVNAKEIFDNITRHKVTHFGGAPTVLNMIANAPPVFENRFRG 298 (301)
Q Consensus 224 ~~~~l~~~p~~h~~g~~~-~~~~l~~g~~~v~~-~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~ 298 (301)
+|+++...|++|.+|+.. ++.++..|+++++. ..+++..+++.++++++|++.++|+++..++..+.....++++
T Consensus 240 ~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~~~~~~~~~~~~~~~ 316 (559)
T PRK08315 240 EDRLCIPVPLYHCFGMVLGNLACVTHGATMVYPGEGFDPLATLAAVEEERCTALYGVPTMFIAELDHPDFARFDLSS 316 (559)
T ss_pred CceEEEecCcHHHHHHHHHHHHHHhccceEEEecCCCCHHHHHHHHHHcCCeEEecchHHHHHHHhCcccCCCCchh
Confidence 999999999999999765 67889999999854 5789999999999999999999999999998876655444443
|
|
| >PRK07514 malonyl-CoA synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-35 Score=268.69 Aligned_cols=267 Identities=21% Similarity=0.263 Sum_probs=219.7
Q ss_pred CCCHHHHHHHHhhhcCCccEEEE-CCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHhhhcccee
Q 046637 13 PLTPISFLERSAVVYRDRPSVVY-GDVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAGAVL 91 (301)
Q Consensus 13 ~~~~~~~l~~~~~~~~~~~al~~-~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~ 91 (301)
..++.+++..++ .+|+++|+.+ +++.+||+||.+.+.++|..|.+.|+++||+|+++++|+++++++++||+++|+++
T Consensus 2 ~~~l~~~~~~~~-~~~~~~a~~~~~~~~~Ty~eL~~~~~~la~~L~~~g~~~gd~v~i~~~~~~e~~v~~la~~~~G~~~ 80 (504)
T PRK07514 2 NNNLFDALRAAF-ADRDAPFIETPDGLRYTYGDLDAASARLANLLVALGVKPGDRVAVQVEKSPEALALYLATLRAGAVF 80 (504)
T ss_pred CccHHHHHHHHh-hCCCCeEEEeCCCCEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCcEE
Confidence 467899999999 9999999998 56799999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCCCHHHHHHHHHhcCceEEEEcCCchhhHHHHHHHhccccCCCCceEEccCCCCCCcccccCCCCccHHHHHhhc
Q 046637 92 CTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVASSSGNLEYESLLAIG 171 (301)
Q Consensus 92 v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (301)
+|+++..+.+++..+++.++++++++++.....+....... ....++.++.... ..+.+.....
T Consensus 81 v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~-----------~~~~~~~~~~ 144 (504)
T PRK07514 81 LPLNTAYTLAELDYFIGDAEPALVVCDPANFAWLSKIAAAA-----GAPHVETLDADGT-----------GSLLEAAAAA 144 (504)
T ss_pred EECCCCCCHHHHHHHHHhCCCcEEEEccchhHHHHHhhhcc-----CCceEEEecCCCc-----------ccHHHhhhhc
Confidence 99999999999999999999999999987765554433221 2233444443211 1222222111
Q ss_pred cccccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhhCCCCCEEEEeccchhhhhhHH-HHHHHHhCC
Q 046637 172 KLREVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPTYLWCVPMFHCNGWCL-TWAVAAQGG 250 (301)
Q Consensus 172 ~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~h~~g~~~-~~~~l~~g~ 250 (301)
..........++++++|+|||||||.||+|.+||.++...+......+++.++|++++..|++|.+|+.. .+.++..|+
T Consensus 145 ~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~ 224 (504)
T PRK07514 145 PDDFETVPRGADDLAAILYTSGTTGRSKGAMLSHGNLLSNALTLVDYWRFTPDDVLIHALPIFHTHGLFVATNVALLAGA 224 (504)
T ss_pred CcccCcccCCCCCeEEEEECCCCCCCCcEEEEecHHHHHHHHHHHHHhCCCCccEEEEecchHHHHHHHHHHHHHHhcCc
Confidence 1111123356789999999999999999999999999998888777888899999999999999999764 678899999
Q ss_pred eEEeeCCCCHHHHHHHHHhcCcceecCChHHHHHHHcCCCCccccccC
Q 046637 251 TNVCQRTVNAKEIFDNITRHKVTHFGGAPTVLNMIANAPPVFENRFRG 298 (301)
Q Consensus 251 ~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~ 298 (301)
++++.+.+++..+++.+. ++|++..+|.++..+++.+.....++++
T Consensus 225 ~~~~~~~~~~~~~~~~i~--~~t~~~~~P~~~~~l~~~~~~~~~~~~~ 270 (504)
T PRK07514 225 SMIFLPKFDPDAVLALMP--RATVMMGVPTFYTRLLQEPRLTREAAAH 270 (504)
T ss_pred EEEECCCCCHHHHHHHHH--hheeeecHHHHHHHHHcCCCCCcccccc
Confidence 999999999999999994 7999999999999999876655544443
|
|
| >PRK06145 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-35 Score=268.41 Aligned_cols=263 Identities=27% Similarity=0.329 Sum_probs=216.3
Q ss_pred CCHHHHHHHHhhhcCCccEEEECCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHhhhccceeee
Q 046637 14 LTPISFLERSAVVYRDRPSVVYGDVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAGAVLCT 93 (301)
Q Consensus 14 ~~~~~~l~~~~~~~~~~~al~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~ 93 (301)
+++.+.|.+.++++|+++|+++.++.+||.||.+.+.++|..|.+.|+++|++|+++++|++++++++|||+++|++++|
T Consensus 2 ~~~~~~~~~~~~~~~~~~a~~~~~~~~ty~el~~~v~~~a~~L~~~g~~~~~~v~i~~~~~~~~~~~~la~~~~G~~~v~ 81 (497)
T PRK06145 2 FNLSASIAFHARRTPDRAALVYRDQEISYAEFHQRILQAAGMLHARGIGQGDVVALLMKNSAAFLELAFAASYLGAVFLP 81 (497)
T ss_pred ccHHHHHHHHHHHCCCceEEEECCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHhcCcEEEe
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHhcCceEEEEcCCchhhHHHHHHHhccccCCCCceEEccCCCCCCcccccCCCCccHHHHHhhccc
Q 046637 94 LNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVASSSGNLEYESLLAIGKL 173 (301)
Q Consensus 94 l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (301)
+++..+.+++.++++.+++++++++........ .....+.++.... ..+..+......
T Consensus 82 l~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~-----------~~~~~~~~~~~~~-----------~~~~~~~~~~~~ 139 (497)
T PRK06145 82 INYRLAADEVAYILGDAGAKLLLVDEEFDAIVA-----------LETPKIVIDAAAQ-----------ADSRRLAQGGLE 139 (497)
T ss_pred cccccCHHHHHHHHHhcCCcEEEEccchhhhhh-----------cccceEEecCccc-----------chhHHHhccCCC
Confidence 999999999999999999999999866543211 0112222222110 011111111111
Q ss_pred cccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhhCCCCCEEEEeccchhhhhhHH-HHHHHHhCCeE
Q 046637 174 REVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPTYLWCVPMFHCNGWCL-TWAVAAQGGTN 252 (301)
Q Consensus 174 ~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~h~~g~~~-~~~~l~~g~~~ 252 (301)
........++++++++|||||||.||+|.+||.++..........+++..+++++...|++|.+++.. .+.++..|+++
T Consensus 140 ~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~g~~~ 219 (497)
T PRK06145 140 IPPQAAVAPTDLVRLMYTSGTTDRPKGVMHSYGNLHWKSIDHVIALGLTASERLLVVGPLYHVGAFDLPGIAVLWVGGTL 219 (497)
T ss_pred CCCCCCCCccceEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhhCCCCCcEEEEecCchhHhHHHHHHHHHHhccCEE
Confidence 11222356789999999999999999999999999877766666778899999999999999999865 57778999999
Q ss_pred EeeCCCCHHHHHHHHHhcCcceecCChHHHHHHHcCCCCccccccC
Q 046637 253 VCQRTVNAKEIFDNITRHKVTHFGGAPTVLNMIANAPPVFENRFRG 298 (301)
Q Consensus 253 v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~ 298 (301)
++.+.+++..+++.++++++|++.++|++++.+++.......++++
T Consensus 220 ~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~ll~~~~~~~~~~~~ 265 (497)
T PRK06145 220 RIHREFDPEAVLAAIERHRLTCAWMAPVMLSRVLTVPDRDRFDLDS 265 (497)
T ss_pred EECCcCCHHHHHHHHHHhCCeEEEehHHHHHHHHcCCCcccccccc
Confidence 9999999999999999999999999999999999876655555443
|
|
| >PRK12583 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-35 Score=269.70 Aligned_cols=285 Identities=24% Similarity=0.323 Sum_probs=223.6
Q ss_pred cccCCCCCCCCHHHHHHHHhhhcCCccEEEE--CCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHH
Q 046637 5 IRCSANYVPLTPISFLERSAVVYRDRPSVVY--GDVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHF 82 (301)
Q Consensus 5 ~~~~~~~~~~~~~~~l~~~~~~~~~~~al~~--~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~l 82 (301)
+....+....++.++|++.++++|+++|+++ .++.+||+||.+.+.++|..|.+.|+++|++|+++++|++++++++|
T Consensus 9 ~~~~~~~~~~~l~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~~a~~L~~~gi~~g~~V~i~~~~~~~~~~~~~ 88 (558)
T PRK12583 9 GGGDKPLLTQTIGDAFDATVARFPDREALVVRHQALRYTWRQLADAVDRLARGLLALGVQPGDRVGIWAPNCAEWLLTQF 88 (558)
T ss_pred CCCCCCcccCcHHHHHHHHHHHCCCCeEEEecCCCcEecHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCChHHHHHHH
Confidence 3444556678999999999999999999988 45789999999999999999999999999999999999999999999
Q ss_pred HhhhccceeeecCCCCCHHHHHHHHHhcCceEEEEcCCch-----hhHHHHHHHhcc---------ccCCCCceEEccCC
Q 046637 83 GVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLL-----PIAQGAFEILSK---------TSAKLPLLVLVPEC 148 (301)
Q Consensus 83 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~~~~~~~~~~~---------~~~~~~~i~~~~~~ 148 (301)
||+++|++++++++..+.+++..+++.++++++++++... ..+.+....... ..+.+..++..+..
T Consensus 89 a~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (558)
T PRK12583 89 ATARIGAILVNINPAYRASELEYALGQSGVRWVICADAFKTSDYHAMLQELLPGLAEGQPGALACERLPELRGVVSLAPA 168 (558)
T ss_pred HHHhhCCEEEecCCCCCHHHHHHHHHhcCCcEEEEeccccccchhHHHHHHhhhhccccccccccccCCcceEEEEecCC
Confidence 9999999999999999999999999999999999976532 122222111110 00012233333222
Q ss_pred CCCCcccccCCCCccHHHHHhhcccc------ccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhhCC
Q 046637 149 GEPVSTVASSSGNLEYESLLAIGKLR------EVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMG 222 (301)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~ 222 (301)
. ..+...|++........ .......++++++++|||||||.||+|.++|.++..++......+++.
T Consensus 169 ~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGsTG~PK~v~~s~~~l~~~~~~~~~~~~~~ 240 (558)
T PRK12583 169 P--------PPGFLAWHELQARGETVSREALAERQASLDRDDPINIQYTSGTTGFPKGATLSHHNILNNGYFVAESLGLT 240 (558)
T ss_pred C--------CccccchHhhhhcccccccccccccccccCCCCcEEEEECCCCCCCCceEEeeHHHHHHHHHHHHHHhCCC
Confidence 1 11223454443322211 112234578899999999999999999999999998888887888899
Q ss_pred CCCEEEEeccchhhhhhHH-HHHHHHhCCeEEeeC-CCCHHHHHHHHHhcCcceecCChHHHHHHHcCCCCcccccc
Q 046637 223 LMPTYLWCVPMFHCNGWCL-TWAVAAQGGTNVCQR-TVNAKEIFDNITRHKVTHFGGAPTVLNMIANAPPVFENRFR 297 (301)
Q Consensus 223 ~~~~~l~~~p~~h~~g~~~-~~~~l~~g~~~v~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~ 297 (301)
.+|++++..|++|.+|... .+.++..|+++++.. .+++..+++.++++++|++.++|+++..+++.......+++
T Consensus 241 ~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~v~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~ 317 (558)
T PRK12583 241 EHDRLCVPVPLYHCFGMVLANLGCMTVGACLVYPNEAFDPLATLQAVEEERCTALYGVPTMFIAELDHPQRGNFDLS 317 (558)
T ss_pred CCCeEEEecCchhhhhHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHcCCeEEeccHHHHHHHHccccccCCCch
Confidence 9999999999999999765 677788899888654 67999999999999999999999999999887655444443
|
|
| >PRK12582 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=276.16 Aligned_cols=269 Identities=21% Similarity=0.211 Sum_probs=205.9
Q ss_pred CCCCCCCCHHHHHHHHhhhcCCccEEEECC------eeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHH
Q 046637 8 SANYVPLTPISFLERSAVVYRDRPSVVYGD------VQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELH 81 (301)
Q Consensus 8 ~~~~~~~~~~~~l~~~~~~~~~~~al~~~~------~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~ 81 (301)
+......++.++|++.++++||++|+++.+ +.+||+||.++++++|++|.+.|+++||+|+++++|++++++++
T Consensus 43 ~~~~~~~~l~~~l~~~a~~~pd~~a~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~ 122 (624)
T PRK12582 43 PLGPYPRSIPHLLAKWAAEAPDRPWLAQREPGHGQWRKVTYGEAKRAVDALAQALLDLGLDPGRPVMILSGNSIEHALMT 122 (624)
T ss_pred CCCCcccCHHHHHHHHHHHCCCchheecccCCCCceEEeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCCCHHHHHHH
Confidence 334457789999999999999999998743 68999999999999999999999999999999999999999999
Q ss_pred HHhhhccceeeecCCCCCH-----HHHHHHHHhcCceEEEEcCCchhhHHHHHHHhccccCCCCceEEccCCCCCCcccc
Q 046637 82 FGVPMAGAVLCTLNTRHDS-----AMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVA 156 (301)
Q Consensus 82 lA~~~~G~~~v~l~~~~~~-----~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 156 (301)
|||+++|++++|++|.++. +++.++++.++++++|+++... ........... ..+ ++.++....
T Consensus 123 lA~~~~G~v~vpl~p~~~~~~~~~~~l~~~l~~~~~~~vi~~~~~~--~~~~~~~~~~~--~~~-~i~~~~~~~------ 191 (624)
T PRK12582 123 LAAMQAGVPAAPVSPAYSLMSHDHAKLKHLFDLVKPRVVFAQSGAP--FARALAALDLL--DVT-VVHVTGPGE------ 191 (624)
T ss_pred HHHHHcCCeEeeccCccccccCCHHHHHHHHHhcCCcEEEecCHHH--HHHHHHhhhhc--Cce-EEEEcCCCc------
Confidence 9999999999999999875 8999999999999999986421 11111111100 122 333332211
Q ss_pred cCCCCccHHHHHhhcccc---ccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhhCCC---CCEEEEe
Q 046637 157 SSSGNLEYESLLAIGKLR---EVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGL---MPTYLWC 230 (301)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~---~~~~l~~ 230 (301)
......+.++....... .......++++++|+|||||||.||||++||.++..+............ +++++..
T Consensus 192 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~l~~ 270 (624)
T PRK12582 192 -GIASIAFADLAATPPTAAVAAAIAAITPDTVAKYLFTSGSTGMPKAVINTQRMMCANIAMQEQLRPREPDPPPPVSLDW 270 (624)
T ss_pred -ccccccHHHHhhcCCcchhhhhhccCCCCceEEEEEcCCCCCCCceEEeeHHHHHHHHHHHHHhccccCCCCCceEEEe
Confidence 01123455554332211 1112345789999999999999999999999999887766544444443 5799999
Q ss_pred ccchhhhhhHH-HHHHHHhCCeEEeeC-CCCH---HHHHHHHHhcCcceecCChHHHHHHHcC
Q 046637 231 VPMFHCNGWCL-TWAVAAQGGTNVCQR-TVNA---KEIFDNITRHKVTHFGGAPTVLNMIANA 288 (301)
Q Consensus 231 ~p~~h~~g~~~-~~~~l~~g~~~v~~~-~~~~---~~~~~~i~~~~~t~~~~~P~~~~~l~~~ 288 (301)
+|++|.+|+.. ++.++..|+++++.+ .+++ ..+++.++++++|+++++|++++.|++.
T Consensus 271 lPl~h~~g~~~~~~~~l~~G~tvvl~~~~~~~~~~~~~~~~i~~~~~t~~~~vP~~~~~l~~~ 333 (624)
T PRK12582 271 MPWNHTMGGNANFNGLLWGGGTLYIDDGKPLPGMFEETIRNLREISPTVYGNVPAGYAMLAEA 333 (624)
T ss_pred chHHHHHhHHHHHHHHHhCceEEEEcCCCcccchHHHHHHHHHhcCCeEEeccCHHHHHHHHH
Confidence 99999999765 567788999998876 3443 4567888999999999999999998764
|
|
| >PRK10946 entE enterobactin synthase subunit E; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-35 Score=270.59 Aligned_cols=262 Identities=21% Similarity=0.263 Sum_probs=215.7
Q ss_pred CCCCCCHHHHHHHHhhhcCCccEEEECCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHhhhccc
Q 046637 10 NYVPLTPISFLERSAVVYRDRPSVVYGDVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAGA 89 (301)
Q Consensus 10 ~~~~~~~~~~l~~~~~~~~~~~al~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~ 89 (301)
.|.+.++.++|.+.++ ||++|+++.++.+||+|+.+.+.++|..|.+.|+++|++|+++++|+++++++++||+++|+
T Consensus 21 ~~~~~~~~~~~~~~a~--p~~~a~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~v~~~n~~~~~~~~la~~~~G~ 98 (536)
T PRK10946 21 YWQDLPLTDILTRHAA--SDAIAVICGERQFSYRELNQASDNLACSLRRQGIKPGDTALVQLGNVAEFYITFFALLKLGV 98 (536)
T ss_pred eecCccHHHHHHHhhC--CCCeEEEeCCCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCChHHHHHHHHHHHHcCe
Confidence 3667889999999887 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeecCCCCCHHHHHHHHHhcCceEEEEcCCchh-----hHHHHHHHhccccCCCCceEEccCCCCCCcccccCCCCccH
Q 046637 90 VLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLP-----IAQGAFEILSKTSAKLPLLVLVPECGEPVSTVASSSGNLEY 164 (301)
Q Consensus 90 ~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~-----~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 164 (301)
+++++.+....+++..+++.++++++++++.... .........+ ....++..+... ...+
T Consensus 99 v~v~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~~~~~~-----------~~~~ 163 (536)
T PRK10946 99 APVNALFSHQRSELNAYASQIEPALLIADRQHALFSDDDFLNTLVAEHS----SLRVVLLLNDDG-----------EHSL 163 (536)
T ss_pred EEecCCccccHHHHHHHHhhcCCCEEEEeccccccchHHHHHHHHhhCC----CceEEEEecCCC-----------CccH
Confidence 9888888888899999999999999999865321 1111222111 233333332211 1234
Q ss_pred HHHHhhccccccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhhCCCCCEEEEeccchhhhhhHH--H
Q 046637 165 ESLLAIGKLREVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPTYLWCVPMFHCNGWCL--T 242 (301)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~h~~g~~~--~ 242 (301)
.++..............++++++++|||||||.||||++||.++..++......+++..++++++.+|++|.+++.. .
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~h~~~~~~~~~ 243 (536)
T PRK10946 164 DDAINHPAEDFTATPSPADEVAFFQLSGGSTGTPKLIPRTHNDYYYSVRRSVEICGFTPQTRYLCALPAAHNYPMSSPGA 243 (536)
T ss_pred HHHhhCcccccccCCCCCCCeEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhcCCCCCceEEEecCccccccchhhhH
Confidence 44443332222223456789999999999999999999999999999888888888999999999999999998763 6
Q ss_pred HHHHHhCCeEEeeCCCCHHHHHHHHHhcCcceecCChHHHHHHHcC
Q 046637 243 WAVAAQGGTNVCQRTVNAKEIFDNITRHKVTHFGGAPTVLNMIANA 288 (301)
Q Consensus 243 ~~~l~~g~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~ 288 (301)
+.++..|+++++.+.+++..+++.++++++|++.++|.+++.+++.
T Consensus 244 ~~~l~~g~~~~~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~ 289 (536)
T PRK10946 244 LGVFLAGGTVVLAPDPSATLCFPLIEKHQVNVTALVPPAVSLWLQA 289 (536)
T ss_pred HHHhhcCcEEEECCCCCHHHHHHHHHHhCCcEEEeChHHHHHHHhh
Confidence 7789999999999889999999999999999999999999999875
|
|
| >PRK10524 prpE propionyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-35 Score=274.77 Aligned_cols=268 Identities=18% Similarity=0.204 Sum_probs=208.7
Q ss_pred HHHHHHHhhhcCCccEEEEC------CeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHhhhccce
Q 046637 17 ISFLERSAVVYRDRPSVVYG------DVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAGAV 90 (301)
Q Consensus 17 ~~~l~~~~~~~~~~~al~~~------~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~ 90 (301)
.++|++.++.+|+++|+++. .+.+||+||.+++.++|..|.+.|+++||+|+++++|++++++++|||+++|++
T Consensus 56 ~~~l~~~~~~~p~~~A~~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Gav 135 (629)
T PRK10524 56 HNAVDRHLAKRPEQLALIAVSTETDEERTYTFRQLHDEVNRMAAMLRSLGVQRGDRVLIYMPMIAEAAFAMLACARIGAI 135 (629)
T ss_pred HHHHHHhhccCCCCeEEEEEcCCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhCcE
Confidence 57788888889999999972 368999999999999999999999999999999999999999999999999999
Q ss_pred eeecCCCCCHHHHHHHHHhcCceEEEEcCCch---------hhHHHHHHHhccccCCCCceEEccCCCCCCcccccCCCC
Q 046637 91 LCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLL---------PIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVASSSGN 161 (301)
Q Consensus 91 ~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~---------~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 161 (301)
++|++|.++.+++.+++++++++++|+++... +.+.+...... .....+++++...... .......
T Consensus 136 ~v~~~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~vi~~~~~~~~~--~~~~~~~ 210 (629)
T PRK10524 136 HSVVFGGFASHSLAARIDDAKPVLIVSADAGSRGGKVVPYKPLLDEAIALAQ---HKPRHVLLVDRGLAPM--ARVAGRD 210 (629)
T ss_pred EEeeCCCCCHHHHHHHHHhcCCcEEEEccCcccCCcccccHHHHHHHHHhcC---CCCCEEEEEeCCCCCc--CcccCCc
Confidence 99999999999999999999999999976432 22333322221 1234555555321100 0000112
Q ss_pred ccHHHHHhhcccc-ccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHH-HHHHHhhCCCCCEEEEeccchhhhhh
Q 046637 162 LEYESLLAIGKLR-EVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSL-AAALFNEMGLMPTYLWCVPMFHCNGW 239 (301)
Q Consensus 162 ~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~-~~~~~~~~~~~~~~l~~~p~~h~~g~ 239 (301)
..+.++....... .......++++++|+|||||||.||||+++|.+++.... .....+++.++|++++..|+.|..|.
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~d~a~il~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 290 (629)
T PRK10524 211 VDYATLRAQHLGARVPVEWLESNEPSYILYTSGTTGKPKGVQRDTGGYAVALATSMDTIFGGKAGETFFCASDIGWVVGH 290 (629)
T ss_pred ccHHHHHhcCCCCCCCceeeCCCCceEEEeecCCCCCCceEEECCcHHHHHHHHHHHHhcCCCCCCEEEEcCCCCeeccc
Confidence 3455554432211 111224578999999999999999999999999765443 34445678889999999999999886
Q ss_pred H-HHHHHHHhCCeEEeeC----CCCHHHHHHHHHhcCcceecCChHHHHHHHcCC
Q 046637 240 C-LTWAVAAQGGTNVCQR----TVNAKEIFDNITRHKVTHFGGAPTVLNMIANAP 289 (301)
Q Consensus 240 ~-~~~~~l~~g~~~v~~~----~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~ 289 (301)
. .++.++..|+++++.+ .+++..+++.++++++|+++++|++++.|.+..
T Consensus 291 ~~~~~~~l~~G~~~v~~~g~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~ 345 (629)
T PRK10524 291 SYIVYAPLLAGMATIMYEGLPTRPDAGIWWRIVEKYKVNRMFSAPTAIRVLKKQD 345 (629)
T ss_pred hHHHHHHHhCCCEEEEECCCCCCCChHHHHHHHHHcCceEEEeCHHHHHHHHhcC
Confidence 5 4788899999999876 357899999999999999999999999998764
|
|
| >PRK03584 acetoacetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-35 Score=275.02 Aligned_cols=258 Identities=24% Similarity=0.314 Sum_probs=202.0
Q ss_pred hcCCccEEEECC-----eeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHhhhccceeeecCCCCCH
Q 046637 26 VYRDRPSVVYGD-----VQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAGAVLCTLNTRHDS 100 (301)
Q Consensus 26 ~~~~~~al~~~~-----~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~ 100 (301)
.+|+++|+++.+ +.+||+||.+++.++|..|.+.|+++||+|+++++|++++++++|||+++|++++|++|.++.
T Consensus 96 ~~~~~~Al~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~v~~~lA~~~~Gav~v~l~~~~~~ 175 (655)
T PRK03584 96 RRDDRPAIIFRGEDGPRRELSWAELRRQVAALAAALRALGVGPGDRVAAYLPNIPETVVAMLATASLGAIWSSCSPDFGV 175 (655)
T ss_pred CCCCCeEEEEECCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCcEEEeeCCCCCH
Confidence 589999999854 689999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCceEEEEcCCch---------hhHHHHHHHhccccCCCCceEEccCCCCCCcccccCCCCccHHHHHhhc
Q 046637 101 AMVSVLLRHSEAKIIFVDYQLL---------PIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVASSSGNLEYESLLAIG 171 (301)
Q Consensus 101 ~~l~~~l~~~~~~~vi~~~~~~---------~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (301)
+++.++++.++++++|+++... ..+.+....++ .++.++.++..... ...........|.++....
T Consensus 176 ~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 250 (655)
T PRK03584 176 QGVLDRFGQIEPKVLIAVDGYRYGGKAFDRRAKVAELRAALP----SLEHVVVVPYLGPA-AAAAALPGALLWEDFLAPA 250 (655)
T ss_pred HHHHHHHHHcCCcEEEEccccccCCcccchHHHHHHHHhcCC----CccEEEEEecCCCc-ccccccCCcccHHHHhhcc
Confidence 9999999999999999987532 22222222222 44556655432210 0011112234566665522
Q ss_pred ccc-ccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHH-HHHHHHHhhCCCCCEEEEeccchhhhhhHHHHHHHHhC
Q 046637 172 KLR-EVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLN-SLAAALFNEMGLMPTYLWCVPMFHCNGWCLTWAVAAQG 249 (301)
Q Consensus 172 ~~~-~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~-~~~~~~~~~~~~~~~~l~~~p~~h~~g~~~~~~~l~~g 249 (301)
... ........+++++|+|||||||.||||++||.+++.+ .......+++.++|++++..++.|+.+. ..+.+++.|
T Consensus 251 ~~~~~~~~~~~~~~~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~-~~~~~L~~G 329 (655)
T PRK03584 251 EAAELEFEPVPFDHPLWILYSSGTTGLPKCIVHGHGGILLEHLKELGLHCDLGPGDRFFWYTTCGWMMWN-WLVSGLLVG 329 (655)
T ss_pred ccCCCCceecCCCCcEEEEecCCCCCCCceEEECccHHHHHHHHHHHHhcCCCCCCEEEEcCCchHHhHH-HHHHHHHcC
Confidence 221 1223356789999999999999999999999987644 4445566788899999999998887542 357889999
Q ss_pred CeEEeeCC----CCHHHHHHHHHhcCcceecCChHHHHHHHcCC
Q 046637 250 GTNVCQRT----VNAKEIFDNITRHKVTHFGGAPTVLNMIANAP 289 (301)
Q Consensus 250 ~~~v~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~ 289 (301)
+++++.++ +++..+++.++++++|++.++|++++.+.+..
T Consensus 330 ~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~ 373 (655)
T PRK03584 330 ATLVLYDGSPFYPDPNVLWDLAAEEGVTVFGTSAKYLDACEKAG 373 (655)
T ss_pred CEEEEeCCCCCCCCHHHHHHHHHHHCCEEEEcCHHHHHHHHhcC
Confidence 99999852 58999999999999999999999999998753
|
|
| >PRK09274 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-36 Score=274.08 Aligned_cols=268 Identities=22% Similarity=0.182 Sum_probs=209.3
Q ss_pred CCCCHHHHHHHHhhhcCCccEEEECCe----------eeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHH
Q 046637 12 VPLTPISFLERSAVVYRDRPSVVYGDV----------QYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELH 81 (301)
Q Consensus 12 ~~~~~~~~l~~~~~~~~~~~al~~~~~----------~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~ 81 (301)
...++.+.|++.++++|+++|+++.+. .+||+||.++++++|++|.+.|+++||+|+++++|++++++++
T Consensus 4 ~~~~~~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~g~~~gd~V~~~~~n~~~~~~~~ 83 (552)
T PRK09274 4 SMANIARHLPRAAQERPDQLAVAVPGGRGADGKLAYDELSFAELDARSDAIAHGLNAAGIGRGMRAVLMVTPSLEFFALT 83 (552)
T ss_pred hhhhHHHHHHHHHHhCCCcceEEeccCCCCccccccCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCcHHHHHHH
Confidence 457889999999999999999998654 8999999999999999999999999999999999999999999
Q ss_pred HHhhhccceeeecCCCCCHHHHHHHHHhcCceEEEEcCCchhhHHHHHHHhccccCCCCceEEccCCCCCCcccccCCCC
Q 046637 82 FGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVASSSGN 161 (301)
Q Consensus 82 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 161 (301)
|||+++|++++|++|.++.+++.+++++++++++|+++.. ........... ...+.++.++... ..+.
T Consensus 84 la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~i~~~~~-~~~~~~~~~~~---~~~~~~i~~~~~~--------~~~~ 151 (552)
T PRK09274 84 FALFKAGAVPVLVDPGMGIKNLKQCLAEAQPDAFIGIPKA-HLARRLFGWGK---PSVRRLVTVGGRL--------LWGG 151 (552)
T ss_pred HHHHHcCeEEEEcCCCccHHHHHHHHHhcCCCEEEeccHH-HHHHHHhccCc---cchhheecccccc--------ccCC
Confidence 9999999999999999999999999999999999987521 11111111000 0223333333210 0111
Q ss_pred ccHHHHHhhcccc-ccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhhCCCCCEEEEeccchhhhhhH
Q 046637 162 LEYESLLAIGKLR-EVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPTYLWCVPMFHCNGWC 240 (301)
Q Consensus 162 ~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~h~~g~~ 240 (301)
..+.++....... .......++++++|+|||||||.||+|++||.++..++......+++.++++.++..|++|.+++
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~- 230 (552)
T PRK09274 152 TTLATLLRDGAAAPFPMADLAPDDMAAILFTSGSTGTPKGVVYTHGMFEAQIEALREDYGIEPGEIDLPTFPLFALFGP- 230 (552)
T ss_pred ccHHHhcccCccccCCCCCCCCCCeEEEEECCCCCCCCceEEecHHHHHHHHHHHHHHhCCCCCceeeeccCHHHhhhh-
Confidence 2344443211111 11223566899999999999999999999999999988888888889999999999999987653
Q ss_pred HHHHHHHhCCeEEeeC-------CCCHHHHHHHHHhcCcceecCChHHHHHHHcCCCCccccccC
Q 046637 241 LTWAVAAQGGTNVCQR-------TVNAKEIFDNITRHKVTHFGGAPTVLNMIANAPPVFENRFRG 298 (301)
Q Consensus 241 ~~~~~l~~g~~~v~~~-------~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~ 298 (301)
..|+++++.+ .+++..+++.++++++|+++++|++++.|.+.......++++
T Consensus 231 ------~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~ 289 (552)
T PRK09274 231 ------ALGMTSVIPDMDPTRPATVDPAKLFAAIERYGVTNLFGSPALLERLGRYGEANGIKLPS 289 (552)
T ss_pred ------hhCCeEEecCcccccccccCHHHHHHHHHHcCCeEEeccHHHHHHHHHHhhhcCCCCch
Confidence 3577777754 468999999999999999999999999999875544445443
|
|
| >PLN02330 4-coumarate--CoA ligase-like 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-35 Score=269.19 Aligned_cols=267 Identities=23% Similarity=0.293 Sum_probs=215.8
Q ss_pred CCCHHHHHHHHhhhcCCccEEEEC--CeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHhhhccce
Q 046637 13 PLTPISFLERSAVVYRDRPSVVYG--DVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAGAV 90 (301)
Q Consensus 13 ~~~~~~~l~~~~~~~~~~~al~~~--~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~ 90 (301)
.+++.+.+.+.++.+|+++|+.+. ++.+||+||.+++.++|..|.+.|+++|++|+++++|++++++++|||+++|++
T Consensus 27 ~~~~~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~ 106 (546)
T PLN02330 27 KLTLPDFVLQDAELYADKVAFVEAVTGKAVTYGEVVRDTRRFAKALRSLGLRKGQVVVVVLPNVAEYGIVALGIMAAGGV 106 (546)
T ss_pred CCcHHHHHhhhhhcCCCccEEEecCCCCcccHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHHHHHhCcE
Confidence 478999999999999999999974 579999999999999999999999999999999999999999999999999999
Q ss_pred eeecCCCCCHHHHHHHHHhcCceEEEEcCCchhhHHHHHHHhccccCCCCceEEccCCCCCCcccccCCCCccHHHHHhh
Q 046637 91 LCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVASSSGNLEYESLLAI 170 (301)
Q Consensus 91 ~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (301)
++|+++..+.+++.++++.++++++++++.....+... ..+ ++.++... ..+...|.+++..
T Consensus 107 ~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~---------~~~-~i~~~~~~--------~~~~~~~~~~~~~ 168 (546)
T PLN02330 107 FSGANPTALESEIKKQAEAAGAKLIVTNDTNYGKVKGL---------GLP-VIVLGEEK--------IEGAVNWKELLEA 168 (546)
T ss_pred eccCCccCCHHHHHHHHHhcCCeEEEEccchhhhHhhc---------CCc-EEEecCCC--------CCCcccHHHHHhh
Confidence 99999999999999999999999999998766554321 122 33333221 1122456666544
Q ss_pred cccc---ccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhh--CCCCCEEEEeccchhhhhhH-HHHH
Q 046637 171 GKLR---EVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNE--MGLMPTYLWCVPMFHCNGWC-LTWA 244 (301)
Q Consensus 171 ~~~~---~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~--~~~~~~~l~~~p~~h~~g~~-~~~~ 244 (301)
.... .......++++++|+|||||||.||||.++|.++..+......... ....++.+...|++|.+|+. .++.
T Consensus 169 ~~~~~~~~~~~~~~~~~~a~il~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~h~~g~~~~~~~ 248 (546)
T PLN02330 169 ADRAGDTSDNEEILQTDLCALPFSSGTTGISKGVMLTHRNLVANLCSSLFSVGPEMIGQVVTLGLIPFFHIYGITGICCA 248 (546)
T ss_pred ccccCcccccccCCcccEEEEEeCCCCcCCCcEEEEehHHHHHHHHHHhhccCccccCceEEEEecChHHHHHHHHHHHH
Confidence 3221 1122345678999999999999999999999999876553221221 12346789999999999976 4677
Q ss_pred HHHhCCeEEeeCCCCHHHHHHHHHhcCcceecCChHHHHHHHcCCCCcccccc
Q 046637 245 VAAQGGTNVCQRTVNAKEIFDNITRHKVTHFGGAPTVLNMIANAPPVFENRFR 297 (301)
Q Consensus 245 ~l~~g~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~ 297 (301)
++..|+++++.+.+++..+++.++++++|.+.++|+++..+++.+.....++.
T Consensus 249 ~l~~g~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~ 301 (546)
T PLN02330 249 TLRNKGKVVVMSRFELRTFLNALITQEVSFAPIVPPIILNLVKNPIVEEFDLS 301 (546)
T ss_pred HhhcCCEEEEecccCHHHHHHHHHHcCCeeeecCCHHHHHHHhCccccccccc
Confidence 89999999999999999999999999999999999999999987665544443
|
|
| >PRK07867 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-35 Score=267.55 Aligned_cols=254 Identities=20% Similarity=0.229 Sum_probs=212.3
Q ss_pred CCCHHHHHHHHhhhcCCccEEEECCeeeeHHHHHHHHHHHHHHHHhc-CCCCCCEEEEEcCCCHHHHHHHHHhhhcccee
Q 046637 13 PLTPISFLERSAVVYRDRPSVVYGDVQYTWKETHQRCVKLASGLAHL-GISPGDVVAALAPNVPAMYELHFGVPMAGAVL 91 (301)
Q Consensus 13 ~~~~~~~l~~~~~~~~~~~al~~~~~~~Ty~el~~~~~~la~~L~~~-gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~ 91 (301)
..++.++|.+.+. +|++++.+.++.+||+||.+++.++|.+|.+. |+++|++|+++++|+++++++++||+++|+++
T Consensus 4 ~~~~~~~l~~~a~--~~~~a~~~~~~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~V~i~~~n~~~~~~~~lA~~~~G~~~ 81 (529)
T PRK07867 4 APTVAELLLPLAE--DDDRGLYFEDSFTSWREHIRGSAARAAALRARLDPTRPPHVGVLLDNTPEFSLLLGAAALSGIVP 81 (529)
T ss_pred cccHHHHHHHhcc--cCCceEEECCcEEeHHHHHHHHHHHHHHHHHhhCCCCCCEEEEECCCCHHHHHHHHHHHhcCCEE
Confidence 4578899988775 78999999999999999999999999999997 89999999999999999999999999999999
Q ss_pred eecCCCCCHHHHHHHHHhcCceEEEEcCCchhhHHHHHHHhccccCCCCceEEccCCCCCCcccccCCCCccHHHHHhhc
Q 046637 92 CTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVASSSGNLEYESLLAIG 171 (301)
Q Consensus 92 v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (301)
+|+++..+.+++.+++++++++++|+++.....+.... . .. .++.++. ..+.+++...
T Consensus 82 v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~---~----~~-~~~~~~~--------------~~~~~~l~~~ 139 (529)
T PRK07867 82 VGLNPTRRGAALARDIAHADCQLVLTESAHAELLDGLD---P----GV-RVINVDS--------------PAWADELAAH 139 (529)
T ss_pred EEecCCCChHHHHHHHHhCCCeEEEECHhHHHHHHhhc---c----Cc-eEEEecc--------------ccHHHHhccc
Confidence 99999999999999999999999999977655433321 1 12 1222221 2233333322
Q ss_pred ccc-ccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhhCCCCCEEEEeccchhhhhhHH-HHHHHHhC
Q 046637 172 KLR-EVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPTYLWCVPMFHCNGWCL-TWAVAAQG 249 (301)
Q Consensus 172 ~~~-~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~h~~g~~~-~~~~l~~g 249 (301)
... .......++++++|+|||||||.||||++||.++..+.......+++..+|++++..|++|.+|+.. .+.++..|
T Consensus 140 ~~~~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~~l~~G 219 (529)
T PRK07867 140 RDAEPPFRVADPDDLFMLIFTSGTSGDPKAVRCTHRKVASAGVMLAQRFGLGPDDVCYVSMPLFHSNAVMAGWAVALAAG 219 (529)
T ss_pred CCCCCCcccCCccceEEEEECCCCCCCCcEEEecHHHHHHHHHHHHHhhCCCcccEEEEecchhHHHHHHHHHHHHHhcC
Confidence 111 1222356789999999999999999999999999988888888888899999999999999999775 56678899
Q ss_pred CeEEeeCCCCHHHHHHHHHhcCcceecCChHHHHHHHcCCC
Q 046637 250 GTNVCQRTVNAKEIFDNITRHKVTHFGGAPTVLNMIANAPP 290 (301)
Q Consensus 250 ~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~ 290 (301)
+++++.+.+++..+++.++++++|++.++|+.++.+++.+.
T Consensus 220 ~~~~~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~ll~~~~ 260 (529)
T PRK07867 220 ASIALRRKFSASGFLPDVRRYGATYANYVGKPLSYVLATPE 260 (529)
T ss_pred ceEEecCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhCCC
Confidence 99999888999999999999999999999999999987654
|
|
| >PRK07798 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-35 Score=267.09 Aligned_cols=261 Identities=28% Similarity=0.322 Sum_probs=212.0
Q ss_pred CCHHHHHHHHhhhcCCccEEEECCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHhhhccceeee
Q 046637 14 LTPISFLERSAVVYRDRPSVVYGDVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAGAVLCT 93 (301)
Q Consensus 14 ~~~~~~l~~~~~~~~~~~al~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~ 93 (301)
.++.++|++.++++||++|+.+.++.+||.||.+.++++|+.|.+.|+++||+|+++++|++++++++|||+++|++++|
T Consensus 3 ~~l~~~~~~~a~~~p~~~a~~~~~~~~ty~el~~~~~~la~~L~~~g~~~~~~v~v~~~n~~~~~~~~~a~~~~G~~~v~ 82 (533)
T PRK07798 3 WNIADLFEAVADAVPDRVALVCGDRRLTYAELEERANRLAHYLIAQGLGPGDHVGIYARNRIEYVEAMLGAFKARAVPVN 82 (533)
T ss_pred ccHHHHHHHHHHhCCCceEEEECCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHhcCeEEEe
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHhcCceEEEEcCCchhhHHHHHHHhccccCCCCceEEccCCCCCCcccccCCCCccHHHHHhhccc
Q 046637 94 LNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVASSSGNLEYESLLAIGKL 173 (301)
Q Consensus 94 l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (301)
+++..+.+++.++++.+++++++++......+.+.....+ ..+.++.+++..... ...+...++++......
T Consensus 83 l~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 154 (533)
T PRK07798 83 VNYRYVEDELRYLLDDSDAVALVYEREFAPRVAEVLPRLP----KLRTLVVVEDGSGND----LLPGAVDYEDALAAGSP 154 (533)
T ss_pred cCcCCCHHHHHHHHhhcCCCEEEEchhhHHHHHHHhccCC----CccEEEEecCCcccc----cCCccccHHHHHhccCC
Confidence 9999999999999999999999999876666555433222 445566555432111 11133467776654333
Q ss_pred cccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHH---------hhC------CCCCEEEEeccchhhhh
Q 046637 174 REVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALF---------NEM------GLMPTYLWCVPMFHCNG 238 (301)
Q Consensus 174 ~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~---------~~~------~~~~~~l~~~p~~h~~g 238 (301)
..... ...++.++|+|||||||.||+|+++|.++.......... ..+ ..+++++...|++|.+|
T Consensus 155 ~~~~~-~~~~~~~~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~ 233 (533)
T PRK07798 155 ERDFG-ERSPDDLYLLYTGGTTGMPKGVMWRQEDIFRVLLGGRDFATGEPIEDEEELAKRAAAGPGMRRFPAPPLMHGAG 233 (533)
T ss_pred cCCCC-CCCCCceEEEECCCCCCCCcEEEEecHHHHHHHhhhhhhhcccchhhhhhhcccccCCCCceEEEecchhhhhh
Confidence 22111 223445799999999999999999999987654432211 111 46788999999999999
Q ss_pred hHHHHHHHHhCCeEEeeC--CCCHHHHHHHHHhcCcceecCChHHHH
Q 046637 239 WCLTWAVAAQGGTNVCQR--TVNAKEIFDNITRHKVTHFGGAPTVLN 283 (301)
Q Consensus 239 ~~~~~~~l~~g~~~v~~~--~~~~~~~~~~i~~~~~t~~~~~P~~~~ 283 (301)
+...+.++..|+++++.+ .+++..+++.++++++|.+.++|..+.
T Consensus 234 ~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~~~~~~ 280 (533)
T PRK07798 234 QWAAFAALFSGQTVVLLPDVRFDADEVWRTIEREKVNVITIVGDAMA 280 (533)
T ss_pred HHHHHHHHhcCceEEEecCCCcCHHHHHHHHHHhCCeEEEechHHHH
Confidence 988899999999999998 889999999999999999999986553
|
|
| >PRK10252 entF enterobactin synthase subunit F; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=296.83 Aligned_cols=257 Identities=17% Similarity=0.147 Sum_probs=218.0
Q ss_pred ccccCCCCCCCCHHHHHHHHhhhcCCccEEEECCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHH
Q 046637 4 MIRCSANYVPLTPISFLERSAVVYRDRPSVVYGDVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFG 83 (301)
Q Consensus 4 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~al~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA 83 (301)
++....+++..++.++|++.++++||++|+++.++.+||+||.+++.++|+.|.+.|+++|++|+++++|++++++++||
T Consensus 448 ~~~~~~~~~~~~l~~~~~~~~~~~p~~~Al~~~~~~~Ty~eL~~~~~~la~~L~~~g~~~g~~V~l~~~~~~~~i~~~la 527 (1296)
T PRK10252 448 VNATAVEIPETTLSALVAQQAAKTPDAPALADARYQFSYREMREQVVALANLLRERGVKPGDSVAVALPRSVFLTLALHA 527 (1296)
T ss_pred hcCCCCCCCcCCHHHHHHHHHHhCCCCeEEEcCCCcEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHH
Confidence 45555666778999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccceeeecCCCCCHHHHHHHHHhcCceEEEEcCCchhhHHHHHHHhccccCCCCceEEccCCCCCCcccccCCCCcc
Q 046637 84 VPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVASSSGNLE 163 (301)
Q Consensus 84 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 163 (301)
|+++|++++|++|..+.+++.++++.+++++++++.+....+.+. . .+. +...+...
T Consensus 528 ~~~~G~~~vpld~~~p~~~~~~~l~~~~~~~~i~~~~~~~~~~~~----~----~~~-~~~~~~~~-------------- 584 (1296)
T PRK10252 528 IVEAGAAWLPLDTGYPDDRLKMMLEDARPSLLITTADQLPRFADV----P----DLT-SLCYNAPL-------------- 584 (1296)
T ss_pred HHHhCCEEEecCccCHHHHHHHHHHhCCCCEEEECcchhhhcccC----C----Cce-eeeccccc--------------
Confidence 999999999999999999999999999999999987654332111 0 111 11111100
Q ss_pred HHHHHhhccccccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhhCCCCCEEEEeccchhhhhhHHHH
Q 046637 164 YESLLAIGKLREVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPTYLWCVPMFHCNGWCLTW 243 (301)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~h~~g~~~~~ 243 (301)
.... ........++++++|+|||||||.||||+++|.++.+.+......+++.++|++++..|++|..++..++
T Consensus 585 -----~~~~-~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~~~~~~d~~l~~~~~~fd~~~~~~~ 658 (1296)
T PRK10252 585 -----APQG-AAPLQLSQPHHTAYIIFTSGSTGRPKGVMVGQTAIVNRLLWMQNHYPLTADDVVLQKTPCSFDVSVWEFF 658 (1296)
T ss_pred -----cccc-CCCCCCCCCCCeEEEEECCCCCCCCCEEEeccHHHHHHHHHHHHhcCCCCCCEEEEeCCcchhhhHHHHH
Confidence 0000 0011123578999999999999999999999999999998888889999999999999999999988889
Q ss_pred HHHHhCCeEEeeC---CCCHHHHHHHHHhcCcceecCChHHHHHHHcCC
Q 046637 244 AVAAQGGTNVCQR---TVNAKEIFDNITRHKVTHFGGAPTVLNMIANAP 289 (301)
Q Consensus 244 ~~l~~g~~~v~~~---~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~ 289 (301)
.++..|+++++.+ ..++..+++.++++++|++.++|++++.+++..
T Consensus 659 ~~l~~G~~l~~~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~l~~l~~~~ 707 (1296)
T PRK10252 659 WPFIAGAKLVMAEPEAHRDPLAMQQFFAEYGVTTTHFVPSMLAAFVASL 707 (1296)
T ss_pred HHHhCCCEEEECChhccCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhhh
Confidence 9999999999976 458999999999999999999999999998764
|
|
| >PRK05677 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-35 Score=267.49 Aligned_cols=277 Identities=18% Similarity=0.217 Sum_probs=212.8
Q ss_pred CCHHHHHHHHhhhcCCccEEEECCeeeeHHHHHHHHHHHHHHHHh-cCCCCCCEEEEEcCCCHHHHHHHHHhhhccceee
Q 046637 14 LTPISFLERSAVVYRDRPSVVYGDVQYTWKETHQRCVKLASGLAH-LGISPGDVVAALAPNVPAMYELHFGVPMAGAVLC 92 (301)
Q Consensus 14 ~~~~~~l~~~~~~~~~~~al~~~~~~~Ty~el~~~~~~la~~L~~-~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v 92 (301)
.++.+.|++.++++|+++|+++.++.+||+|+.+++.++|+.|.+ .|+++||+|+++++|++++++++|||+++|++++
T Consensus 24 ~~~~~~l~~~a~~~p~~~al~~~~~~~Ty~el~~~~~~la~~L~~~~gi~~gd~Vai~~~n~~~~~~~~la~~~~Ga~~v 103 (562)
T PRK05677 24 PNIQAVLKQSCQRFADKPAFSNLGKTLTYGELYKLSGAFAAWLQQHTDLKPGDRIAVQLPNVLQYPVAVFGAMRAGLIVV 103 (562)
T ss_pred CcHHHHHHHHHHhCCCCeeEEECCceeeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHcCeEEe
Confidence 589999999999999999999999999999999999999999997 6999999999999999999999999999999999
Q ss_pred ecCCCCCHHHHHHHHHhcCceEEEEcCCchhhHHHHHHHhccccCCCCceEEccCCCCCC-----------------ccc
Q 046637 93 TLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGEPV-----------------STV 155 (301)
Q Consensus 93 ~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-----------------~~~ 155 (301)
|++|..+.+++.++++.++++++|++........+..... ..+.++..+...... ...
T Consensus 104 ~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (562)
T PRK05677 104 NTNPLYTAREMEHQFNDSGAKALVCLANMAHLAEKVLPKT-----GVKHVIVTEVADMLPPLKRLLINAVVKHVKKMVPA 178 (562)
T ss_pred ecCCCCCHHHHHHHHhccCceEEEEecchhhhHHHhhhcc-----CcceeEEecccccccchhhhhcccchhhccccccc
Confidence 9999999999999999999999999877655444433211 233333322110000 000
Q ss_pred ccCCCCccHHHHHhhcccc-ccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhh--CC-CCCEEEEec
Q 046637 156 ASSSGNLEYESLLAIGKLR-EVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNE--MG-LMPTYLWCV 231 (301)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~--~~-~~~~~l~~~ 231 (301)
........+.+.+...... .......++++++|+|||||||.||||.++|.++..+.......+. +. ..+++++.+
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (562)
T PRK05677 179 YHLPQAVKFNDALAKGAGQPVTEANPQADDVAVLQYTGGTTGVAKGAMLTHRNLVANMLQCRALMGSNLNEGCEILIAPL 258 (562)
T ss_pred cCCcccccHHHHHhcCCCCCCCCCCCCccCEEEEEeCCCCCCCCcEEEEehhHHHHHHHHHHHHhccCCCCCccEEEEcC
Confidence 0001123344443322221 1122346789999999999999999999999999877665544443 33 346889999
Q ss_pred cchhhhhhHH-HHHHHHhCCeEEeeC-CCCHHHHHHHHHhcCcceecCChHHHHHHHcCCCCcccc
Q 046637 232 PMFHCNGWCL-TWAVAAQGGTNVCQR-TVNAKEIFDNITRHKVTHFGGAPTVLNMIANAPPVFENR 295 (301)
Q Consensus 232 p~~h~~g~~~-~~~~l~~g~~~v~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~ 295 (301)
|++|.+|+.. ++..+..|++.++.+ .+++..+++.++++++|+++.+|+++..+++.......+
T Consensus 259 pl~h~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~ 324 (562)
T PRK05677 259 PLYHIYAFTFHCMAMMLIGNHNILISNPRDLPAMVKELGKWKFSGFVGLNTLFVALCNNEAFRKLD 324 (562)
T ss_pred cHHHHHHHHHHHHHHHHcCCeEEEecCcccHHHHHHHHHHcCceEEecHHHHHHHHHhCcccccCC
Confidence 9999999874 566777888777665 568999999999999999999999999998765444333
|
|
| >PRK12467 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-36 Score=318.12 Aligned_cols=260 Identities=18% Similarity=0.177 Sum_probs=220.2
Q ss_pred cccccCCCCC-CCCHHHHHHHHhhhcCCccEEEECCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHH
Q 046637 3 GMIRCSANYV-PLTPISFLERSAVVYRDRPSVVYGDVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELH 81 (301)
Q Consensus 3 ~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~al~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~ 81 (301)
.+|....+++ ..++.++|++.++++||++|+++.++++||+||.++++++|+.|.+.|+++|++|+++++|++++++++
T Consensus 3083 ~~~~~~~~~~~~~~~~~l~~~~a~~~p~~~Av~~~~~~lTY~eL~~~a~~lA~~L~~~gv~~g~~V~l~~~~s~~~vv~~ 3162 (3956)
T PRK12467 3083 AWNATAAAYPSERLVHQLIEAQVARTPEAPALVFGDQQLSYAELNRRANRLAHRLIAIGVGPDVLVGVAVERSVEMIVAL 3162 (3956)
T ss_pred hhccCCCCCCccccHHHHHHHHHHhCCCcceEeeCCcccCHHHHHHHHHHHHHHHHHcCCCCCCeEEEEeCCCHHHHHHH
Confidence 3555544444 479999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhccceeeecCCCCCHHHHHHHHHhcCceEEEEcCCchhhHHHHHHHhccccCCCCceEEccCCCCCCcccccCCCC
Q 046637 82 FGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVASSSGN 161 (301)
Q Consensus 82 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 161 (301)
|||+++|++++|++|.++.+++.++++++++++++++......+... ....++.++....
T Consensus 3163 lavl~aGa~~vpld~~~p~~rl~~il~~~~~~~vlt~~~~~~~~~~~---------~~~~~~~~~~~~~----------- 3222 (3956)
T PRK12467 3163 LAVLKAGGAYVPLDPEYPRERLAYMIEDSGVKLLLTQAHLLEQLPAP---------AGDTALTLDRLDL----------- 3222 (3956)
T ss_pred HHHHhhCcEeecCCCCChHHHHHHHHhCCCCcEEEechhhhhhcccc---------cCCceeeecchhh-----------
Confidence 99999999999999999999999999999999999987653322110 1112222222110
Q ss_pred ccHHHHHhhccccccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhhCCCCCEEEEeccchhhhhhHH
Q 046637 162 LEYESLLAIGKLREVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPTYLWCVPMFHCNGWCL 241 (301)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~h~~g~~~ 241 (301)
.............++++++|+|||||||+||||+++|+++.+.+......+++.++|++++..|++|..+...
T Consensus 3223 -------~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~~~~~~d~~l~~~~~~fd~~~~~ 3295 (3956)
T PRK12467 3223 -------NGYSENNPSTRVMGENLAYVIYTSGSTGKPKGVGVRHGALANHLCWIAEAYELDANDRVLLFMSFSFDGAQER 3295 (3956)
T ss_pred -------cccCCCCCcccCCCCceEEEEEccCCCCCcceeeehhHHHHHHHHHHHHhcCCCcCCEEEEecCccHhHHHHH
Confidence 0000111222356789999999999999999999999999999998888899999999999999999999888
Q ss_pred HHHHHHhCCeEEeeCC--CCHHHHHHHHHhcCcceecCChHHHHHHHcCC
Q 046637 242 TWAVAAQGGTNVCQRT--VNAKEIFDNITRHKVTHFGGAPTVLNMIANAP 289 (301)
Q Consensus 242 ~~~~l~~g~~~v~~~~--~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~ 289 (301)
++.++..|+++++.++ +++..+++.|+++++|++.++|++++.+++..
T Consensus 3296 ~~~~L~~G~~l~i~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~l~~l~~~~ 3345 (3956)
T PRK12467 3296 FLWTLICGGCLVVRDNDLWDPEELWQAIHAHRISIACFPPAYLQQFAEDA 3345 (3956)
T ss_pred HHHHHhCCCEEEECCcccCCHHHHHHHHHHcCCEEEEcCHHHHHHHHhcc
Confidence 9999999999999875 78999999999999999999999999998753
|
|
| >PLN02574 4-coumarate--CoA ligase-like | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-35 Score=269.16 Aligned_cols=270 Identities=23% Similarity=0.298 Sum_probs=207.0
Q ss_pred CCHHHHHHHHhhhcCCccEEEECC--eeeeHHHHHHHHHHHHHHHHh-cCCCCCCEEEEEcCCCHHHHHHHHHhhhccce
Q 046637 14 LTPISFLERSAVVYRDRPSVVYGD--VQYTWKETHQRCVKLASGLAH-LGISPGDVVAALAPNVPAMYELHFGVPMAGAV 90 (301)
Q Consensus 14 ~~~~~~l~~~~~~~~~~~al~~~~--~~~Ty~el~~~~~~la~~L~~-~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~ 90 (301)
.++.+.+... +.+|+++|+++.+ ..+||+||.+++.++|++|.+ .|+++||+|+++++|++++++++|||+++|++
T Consensus 40 ~~~~~~l~~~-~~~~~~~a~~~~~~~~~~Ty~el~~~~~~lA~~L~~~~G~~~gd~V~i~~~n~~~~~~~~la~~~~G~v 118 (560)
T PLN02574 40 LDAVSFIFSH-HNHNGDTALIDSSTGFSISYSELQPLVKSMAAGLYHVMGVRQGDVVLLLLPNSVYFPVIFLAVLSLGGI 118 (560)
T ss_pred CCHHHHHhcC-cccCCCCEEEECCCCCcccHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCcchHHHHHHHHHHhCeE
Confidence 4444444333 6799999999864 379999999999999999999 99999999999999999999999999999999
Q ss_pred eeecCCCCCHHHHHHHHHhcCceEEEEcCCchhhHHHHHHHhccccCCCCceEEccCCCCCCcccccCCCCccHHHHHhh
Q 046637 91 LCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVASSSGNLEYESLLAI 170 (301)
Q Consensus 91 ~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (301)
++|++|..+.+++.++++.+++++++++......+.. . ..+ ++.++...... ........+.++...
T Consensus 119 ~v~l~p~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~----~-----~~~-~~~~~~~~~~~---~~~~~~~~~~~~~~~ 185 (560)
T PLN02574 119 VTTMNPSSSLGEIKKRVVDCSVGLAFTSPENVEKLSP----L-----GVP-VIGVPENYDFD---SKRIEFPKFYELIKE 185 (560)
T ss_pred EeCcCcccCHHHHHHHHHhcCCEEEEECHHHHHHHHh----c-----CCc-EEecCcccccc---cCccCcccHHHHhhc
Confidence 9999999999999999999999999998765443321 1 122 22222111000 001122345555443
Q ss_pred ccccccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHH----HhhC-CCCCEEEEeccchhhhhhHH-HHH
Q 046637 171 GKLREVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAAL----FNEM-GLMPTYLWCVPMFHCNGWCL-TWA 244 (301)
Q Consensus 171 ~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~----~~~~-~~~~~~l~~~p~~h~~g~~~-~~~ 244 (301)
...........++++++|+|||||||.||||++||.++..+...... .... ..+++++..+|++|.+|+.. ++.
T Consensus 186 ~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~ 265 (560)
T PLN02574 186 DFDFVPKPVIKQDDVAAIMYSSGTTGASKGVVLTHRNLIAMVELFVRFEASQYEYPGSDNVYLAALPMFHIYGLSLFVVG 265 (560)
T ss_pred CCcccccCCCCcCCEEEEEcCCCccCCCcEEEEeHHHHHHHHHHHHhccccccccCCCCcEEEEecchHHHHHHHHHHHH
Confidence 32222223356789999999999999999999999999887665432 1222 35688999999999999875 566
Q ss_pred HHHhCCeEEeeCCCCHHHHHHHHHhcCcceecCChHHHHHHHcCCCC-cccccc
Q 046637 245 VAAQGGTNVCQRTVNAKEIFDNITRHKVTHFGGAPTVLNMIANAPPV-FENRFR 297 (301)
Q Consensus 245 ~l~~g~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~-~~~~l~ 297 (301)
++..|+++++.+.+++..+++.++++++|++.++|+++..|++.+.. ...+++
T Consensus 266 ~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~ 319 (560)
T PLN02574 266 LLSLGSTIVVMRRFDASDMVKVIDRFKVTHFPVVPPILMALTKKAKGVCGEVLK 319 (560)
T ss_pred HHhcCCEEEEecCCCHHHHHHHHHHcCCeEEecCCHHHHHHHhCccccccCccc
Confidence 77889999999999999999999999999999999999999987543 333443
|
|
| >PRK07769 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-35 Score=272.62 Aligned_cols=254 Identities=21% Similarity=0.206 Sum_probs=204.7
Q ss_pred CCCCHHHHHHHHhhhcCCccEEEECC---------eeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHH
Q 046637 12 VPLTPISFLERSAVVYRDRPSVVYGD---------VQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHF 82 (301)
Q Consensus 12 ~~~~~~~~l~~~~~~~~~~~al~~~~---------~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~l 82 (301)
...++.++|++.++++|+++|+++.+ +.+||+||.+++.++|++|.+. +++||+|+++++|++++++++|
T Consensus 19 ~~~~l~~~l~~~a~~~~~~~a~~~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~-~~~gd~V~i~~~n~~e~~~~~l 97 (631)
T PRK07769 19 PNTNLVRHVERWAKVRGDKLAYRFLDFSTERDGVARDLTWSQFGARNRAVGARLQQV-TKPGDRVAILAPQNLDYLIAFF 97 (631)
T ss_pred ccCCHHHHHHHHHHhCCCCeEEEEeccCCCCCCceeEeeHHHHHHHHHHHHHHHHHh-cCCCCEEEEEcCCChHHHHHHH
Confidence 34689999999999999999998732 5799999999999999999987 8999999999999999999999
Q ss_pred Hhhhccceeeec-CCCCC--HHHHHHHHHhcCceEEEEcCCchhhHHHHHHHhccccCCCCceEEccCCCCCCcccccCC
Q 046637 83 GVPMAGAVLCTL-NTRHD--SAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVASSS 159 (301)
Q Consensus 83 A~~~~G~~~v~l-~~~~~--~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 159 (301)
||+++|++++|+ ++..+ .+++.+++++++++++|+++.....+.+.....+.. ....++.++.....
T Consensus 98 A~~~~G~v~vpl~~~~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-------- 167 (631)
T PRK07769 98 GALYAGRIAVPLFDPAEPGHVGRLHAVLDDCTPSAILTTTDSAEGVRKFFRARPAK--ERPRVIAVDAVPDE-------- 167 (631)
T ss_pred HHHHcCCEEEeeCCCCccchHHHHHHHHHhCCCCEEEEChHHHHHHHHHHhhcccc--ccceEEEccccccc--------
Confidence 999999999999 45554 688999999999999999877655544433322210 12334443321100
Q ss_pred CCccHHHHHhhccccccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhhCCCCCEEEEeccchhhhhh
Q 046637 160 GNLEYESLLAIGKLREVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPTYLWCVPMFHCNGW 239 (301)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~h~~g~ 239 (301)
. . .........++++++|+|||||||.||||++||.++..+.......+++..++++++.+|++|.+|+
T Consensus 168 --~------~---~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~Pl~h~~gl 236 (631)
T PRK07769 168 --V------G---ATWVPPEANEDTIAYLQYTSGSTRIPAGVQITHLNLPTNVLQVIDALEGQEGDRGVSWLPFFHDMGL 236 (631)
T ss_pred --c------c---cccCCCCCCCCCeEEEEeCCCCCCCCcEEEEcHHHHHHHHHHHHHHcCCCCcceEEEeCCCcCchhh
Confidence 0 0 0001113457899999999999999999999999999888877777888899999999999999999
Q ss_pred HHHHHHHHhCCeEEeeC--CC--CHHHHHHHHHhcCc---ceecCChHHHHHHHc
Q 046637 240 CLTWAVAAQGGTNVCQR--TV--NAKEIFDNITRHKV---THFGGAPTVLNMIAN 287 (301)
Q Consensus 240 ~~~~~~l~~g~~~v~~~--~~--~~~~~~~~i~~~~~---t~~~~~P~~~~~l~~ 287 (301)
...+.+++.|+++++.+ .+ ++..+++.+.++++ +.+..+|+++..+++
T Consensus 237 ~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~p~~~~~l~~ 291 (631)
T PRK07769 237 ITVLLPALLGHYITFMSPAAFVRRPGRWIRELARKPGGTGGTFSAAPNFAFEHAA 291 (631)
T ss_pred HHHHHHHhhCCeEEEEChHHHHhCHHHHHHHHHhhccccCceEeeCCchHHHHHH
Confidence 87777888899998875 34 89999999999986 789999999887765
|
|
| >TIGR03205 pimA dicarboxylate--CoA ligase PimA | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-34 Score=263.03 Aligned_cols=280 Identities=21% Similarity=0.248 Sum_probs=214.4
Q ss_pred CCCHHHHHHHHhhhcCCccEEEECCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHhhhccceee
Q 046637 13 PLTPISFLERSAVVYRDRPSVVYGDVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAGAVLC 92 (301)
Q Consensus 13 ~~~~~~~l~~~~~~~~~~~al~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v 92 (301)
..++.++|++.++.+|+++|+++.++.+||.||.++++++|.+|.+.|+++|++|+++++|+++++++++||+++|++++
T Consensus 20 ~~~~~~~~~~~~~~~p~~~a~~~~~~~~ty~el~~~~~~~a~~L~~~gi~~g~~V~i~~~~~~~~~~~~la~~~~G~~~v 99 (541)
T TIGR03205 20 RGTLPDLLSKAAADYGPRPALEFRDRPITYTELEAMAETAAAALLRAGYGKDASVALYLGNTPDHPINFFGALKAGARVV 99 (541)
T ss_pred CCCHHHHHHHHHHHcCCCceEEECCcEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHHHHHhcCeEEE
Confidence 66899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCHHHHHHHHHhcCceEEEEcCCchhhHHHHHHHhccccCCCCceEEccCCCCCCc-----ccccCCCCccHHHH
Q 046637 93 TLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGEPVS-----TVASSSGNLEYESL 167 (301)
Q Consensus 93 ~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-----~~~~~~~~~~~~~~ 167 (301)
|++|..+.+++.++++.++++++++++.. .......+..... .+..+++.+....... ..........++++
T Consensus 100 ~l~~~~~~~~l~~~i~~~~~~~vi~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (541)
T TIGR03205 100 HLSPLDGERALSHKLSDSGARLLITSDLA-ALLPMALKFLEKG--LLDRLIVCEDDNWGKVGTPQAPIPADPRIVTYADF 176 (541)
T ss_pred ecCCCCCHHHHHHHHhhcCceEEEEeCch-hhhHHHHHhhhcc--cceEEEEecccccccccccccccCCCcccccHHHH
Confidence 99999999999999999999999998642 1111111111100 2334444433211000 00011123456666
Q ss_pred HhhccccccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHh------hCCCCCEEEEeccchhhhhhHH
Q 046637 168 LAIGKLREVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFN------EMGLMPTYLWCVPMFHCNGWCL 241 (301)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~------~~~~~~~~l~~~p~~h~~g~~~ 241 (301)
..............++++++++|||||||.||||+++|.++....... ..+ .....+++++..|++|.+|+..
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~-~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~ 255 (541)
T TIGR03205 177 VKGAAAPAEWPAVTPDDVALLQYTGGTTGLPKGAMLTHGNLTSAVSIY-DVWGKPSRATRGDVERVICVLPLFHIYALTV 255 (541)
T ss_pred HhcCCCCCCCCCCCccCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHH-HhhcccccccCCCCceEEEeccHHHHHHHHH
Confidence 543322222234567899999999999999999999999987644321 111 2234478999999999999775
Q ss_pred -HHHHHHhCCeEEeeCCCCHHHHHHHHHhcCcceecCChHHHHHHHcCCCCccccc
Q 046637 242 -TWAVAAQGGTNVCQRTVNAKEIFDNITRHKVTHFGGAPTVLNMIANAPPVFENRF 296 (301)
Q Consensus 242 -~~~~l~~g~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l 296 (301)
++.++..|+++++.+.+++..+++.|+++++|++.++|+++..|++.+.....++
T Consensus 256 ~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~ 311 (541)
T TIGR03205 256 ILLRSLRRGDLISLHQRFDVAAVFRDIEEKRATVFPGVPTMWIALANDPSLEKRDL 311 (541)
T ss_pred HHHHHHhcCCEEEecCCCCHHHHHHHHHHcCCeEeechHHHHHHHHhCccccccCc
Confidence 6778889999988888899999999999999999999999999987654443443
|
PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids. |
| >PRK08043 bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-35 Score=277.88 Aligned_cols=261 Identities=16% Similarity=0.211 Sum_probs=206.0
Q ss_pred CCCCHHHHHHHHhhhcCC-ccEEEECC-eeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHhhhccc
Q 046637 12 VPLTPISFLERSAVVYRD-RPSVVYGD-VQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAGA 89 (301)
Q Consensus 12 ~~~~~~~~l~~~~~~~~~-~~al~~~~-~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~ 89 (301)
+..++.+.|.+.++++|+ ++|+.+.+ +.+||+|+.++++++|+.|.+. +++||+|+++++|++++++++|||+++|+
T Consensus 202 ~~~t~~~~l~~~~~~~p~~~~a~~~~~~~~~Ty~el~~~~~~lA~~L~~~-~~~gd~Val~~~n~~e~~~~~lA~~~~G~ 280 (718)
T PRK08043 202 PRETLYEALLSAQYRYGAGKPCIEDVNFTPDSYRKLLKKTLFVGRILEKY-SVEGERIGLMLPNATISAAVIFGASLRRR 280 (718)
T ss_pred CCCCHHHHHHHHHHHhCCCCcceEcCCCCcccHHHHHHHHHHHHHHHHHh-cCCCceEEEEcCCcHHHHHHHHHHHHcCC
Confidence 357899999999999998 58887643 7899999999999999999987 59999999999999999999999999999
Q ss_pred eeeecCCCCCHHHHHHHHHhcCceEEEEcCCchhhHH--HHHHHhccccCCCCceEEccCCCCCCcccccCCCCccHHHH
Q 046637 90 VLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQ--GAFEILSKTSAKLPLLVLVPECGEPVSTVASSSGNLEYESL 167 (301)
Q Consensus 90 ~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~--~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (301)
+++|+++.++.+++.+++++++++++|++.+..+... ....... ... ++.+++.... ..+.+.
T Consensus 281 v~vpl~~~~~~~~l~~~l~~s~~~~vi~~~~~~~~~~~~~~~~~~~----~~~-~i~~~~~~~~----------~~~~~~ 345 (718)
T PRK08043 281 IPAMMNYTAGVKGLTSAITAAEIKTIFTSRQFLDKGKLWHLPEQLT----QVR-WVYLEDLKDD----------VTTADK 345 (718)
T ss_pred cccccccCcCHHHHHHHHHHcCCcEEEEcHHHHhhccCCChhhhhc----ccc-EEEhhhhhhh----------cchhHH
Confidence 9999999999999999999999999999866543210 0111111 122 2222221100 011110
Q ss_pred ----HhhccccccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhhCCCCCEEEEeccchhhhhhHH-H
Q 046637 168 ----LAIGKLREVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPTYLWCVPMFHCNGWCL-T 242 (301)
Q Consensus 168 ----~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~h~~g~~~-~ 242 (301)
..............++++++|+|||||||.||||++||.++..+.......+++..+|++++.+|++|.+|+.. +
T Consensus 346 ~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~Pl~h~~g~~~~~ 425 (718)
T PRK08043 346 LWIFAHLLMPRLAQVKQQPEDAALILFTSGSEGHPKGVVHSHKSLLANVEQIKTIADFTPNDRFMSALPLFHSFGLTVGL 425 (718)
T ss_pred HHHHHHHhCCccccCCCCCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhhCCCccCeEEEcCcchhhhhhHHHH
Confidence 00000111112346789999999999999999999999999988877777778899999999999999999865 6
Q ss_pred HHHHHhCCeEEeeCC-CCHHHHHHHHHhcCcceecCChHHHHHHHcC
Q 046637 243 WAVAAQGGTNVCQRT-VNAKEIFDNITRHKVTHFGGAPTVLNMIANA 288 (301)
Q Consensus 243 ~~~l~~g~~~v~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~ 288 (301)
+.++..|+++++.+. +++..+++.++++++|+++.+|+++..+.+.
T Consensus 426 ~~~l~~G~~vv~~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~ 472 (718)
T PRK08043 426 FTPLLTGAEVFLYPSPLHYRIVPELVYDRNCTVLFGTSTFLGNYARF 472 (718)
T ss_pred HHHHHcCCEEEEeCCcccHHHHHHHHHhcCCeEEEchHHHHHHhhhh
Confidence 788999999998874 5778899999999999999999999988764
|
|
| >TIGR02262 benz_CoA_lig benzoate-CoA ligase family | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-34 Score=261.00 Aligned_cols=262 Identities=23% Similarity=0.285 Sum_probs=214.6
Q ss_pred HHHHHHHH-hhhcCCccEEEECCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHhhhccceeeec
Q 046637 16 PISFLERS-AVVYRDRPSVVYGDVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAGAVLCTL 94 (301)
Q Consensus 16 ~~~~l~~~-~~~~~~~~al~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l 94 (301)
-.+++.++ ++.+||++|+++.++.+||.|+.+.++++|+.|.+.|+++|++|+++++|+++++++++||+++|++++|+
T Consensus 6 ~~~~~~~~~~~~~p~~~a~~~~~~~~ty~~l~~~~~~~a~~L~~~g~~~g~~v~l~~~~~~~~~~~~~a~~~~G~~~v~l 85 (508)
T TIGR02262 6 AEDLLDRNVVEGRGGKTAFIDDISSLSYGELEAQVRRLGAALRRLGVKREERVLLLMLDGVDFPIAFLGAIRAGIVPVAL 85 (508)
T ss_pred HHHHHHHHHhcccCCceEEEeCCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCcEEeec
Confidence 34667665 67799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCceEEEEcCCchhhHHHHHHHhccccCCCCceEEccCCCCCCcccccCCCCccHHHHHhhcccc
Q 046637 95 NTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVASSSGNLEYESLLAIGKLR 174 (301)
Q Consensus 95 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (301)
++..+.+++.++++.+++++++++......+.+.....+ ..+.++..+.... ....+.+........
T Consensus 86 ~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~ 152 (508)
T TIGR02262 86 NTLLTADDYAYMLEDSRARVVFVSGELLPVIKAALGKSP----HLEHRVVVGRPEA---------GEVQLAELLATESEQ 152 (508)
T ss_pred cCCCCHHHHHHHHHhcCCeEEEEchhhHHHHHHHHhcCC----CccEEEEeCCCCc---------ccccHHHHhhcCCCc
Confidence 999999999999999999999999877666555444333 4455555443211 112344433322222
Q ss_pred ccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHH-HHHHhhCCCCCEEEEeccchhhhhhHH-HHHHHHhCCeE
Q 046637 175 EVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLA-AALFNEMGLMPTYLWCVPMFHCNGWCL-TWAVAAQGGTN 252 (301)
Q Consensus 175 ~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~-~~~~~~~~~~~~~l~~~p~~h~~g~~~-~~~~l~~g~~~ 252 (301)
.......++++++|+|||||||.||||.++|.++...... ....+++..+|+++...|++|.+++.. ++.++..|+++
T Consensus 153 ~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~l~~G~~~ 232 (508)
T TIGR02262 153 FKPAATQADDPAFWLYSSGSTGMPKGVVHTHSNPYWTAELYARNTLGIREDDVVFSAAKLFFAYGLGNALTFPMSVGATT 232 (508)
T ss_pred cCCCCCCCCCcEEEEeCCCCCCCCcEEEEechhHHHHHHHHhHHhcCCCCCCEEEEcCchHHHHHHHHHHHHHHHcCceE
Confidence 2223355789999999999999999999999999877665 445667889999999999999999864 66778899999
Q ss_pred EeeC-CCCHHHHHHHHHhcCcceecCChHHHHHHHcCCC
Q 046637 253 VCQR-TVNAKEIFDNITRHKVTHFGGAPTVLNMIANAPP 290 (301)
Q Consensus 253 v~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~ 290 (301)
++.+ .+++..+++.++++++|++.++|.++..+++...
T Consensus 233 ~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~~~~~~~ 271 (508)
T TIGR02262 233 VLMGERPTPDAVFDRLRRHQPTIFYGVPTLYAAMLADPN 271 (508)
T ss_pred EEeCCCCCHHHHHHHHHHHCCcEEecchHHHHHHhcCcc
Confidence 8876 4689999999999999999999999999887654
|
Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases. |
| >PRK07059 Long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-34 Score=262.92 Aligned_cols=280 Identities=22% Similarity=0.216 Sum_probs=215.8
Q ss_pred CCCHHHHHHHHhhhcCCccEEEECCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHhhhccceee
Q 046637 13 PLTPISFLERSAVVYRDRPSVVYGDVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAGAVLC 92 (301)
Q Consensus 13 ~~~~~~~l~~~~~~~~~~~al~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v 92 (301)
+.++.++|.+.++++|+++|+++.++.+||+||.+.+.++|..|.+.|+++||+|+++++|++++++++|||+++|++++
T Consensus 22 ~~~i~~~l~~~a~~~p~~~a~~~~~~~lTy~~l~~~~~~~a~~L~~~gi~~gd~V~i~~~n~~~~~~~~la~~~~G~~~v 101 (557)
T PRK07059 22 YPSLADLLEESFRQYADRPAFICMGKAITYGELDELSRALAAWLQSRGLAKGARVAIMMPNVLQYPVAIAAVLRAGYVVV 101 (557)
T ss_pred CCCHHHHHHHHHHHcCCCceEEEcCceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHhcCeEEe
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCHHHHHHHHHhcCceEEEEcCCchhhHHHHHHHhccccCCCCceEEccCCCCCC----------------cccc
Q 046637 93 TLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGEPV----------------STVA 156 (301)
Q Consensus 93 ~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~----------------~~~~ 156 (301)
|++|..+.+++.++++.++++++++++.......+..... ..+.++......... ....
T Consensus 102 ~v~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (557)
T PRK07059 102 NVNPLYTPRELEHQLKDSGAEAIVVLENFATTVQQVLAKT-----AVKHVVVASMGDLLGFKGHIVNFVVRRVKKMVPAW 176 (557)
T ss_pred ccCcccCHHHHHHHHHccCceEEEEchhhHHHHHHhhccc-----CCceeEEeccccccccccccccccccccccccccc
Confidence 9999999999999999999999999877655444433221 233333322110000 0000
Q ss_pred cCCCCccHHHHHhhcccc-ccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhh----CC---CCCEEE
Q 046637 157 SSSGNLEYESLLAIGKLR-EVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNE----MG---LMPTYL 228 (301)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~----~~---~~~~~l 228 (301)
...+...+++........ .......++++++|+|||||||.||+|+++|.+++.+.......+. .. .+..++
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (557)
T PRK07059 177 SLPGHVRFNDALAEGARQTFKPVKLGPDDVAFLQYTGGTTGVSKGATLLHRNIVANVLQMEAWLQPAFEKKPRPDQLNFV 256 (557)
T ss_pred CCCCcccHHHHhhccCCCCCCCCCCCcCceEEEEeCCCCCCCCcEEEeecHHHHHHHHHHhhhhcccccccCCCCCcEEE
Confidence 112234455554433222 1223456789999999999999999999999999876554332221 11 235678
Q ss_pred EeccchhhhhhH-HHHHHHHhCCeEEeeCC-CCHHHHHHHHHhcCcceecCChHHHHHHHcCCCCcccccc
Q 046637 229 WCVPMFHCNGWC-LTWAVAAQGGTNVCQRT-VNAKEIFDNITRHKVTHFGGAPTVLNMIANAPPVFENRFR 297 (301)
Q Consensus 229 ~~~p~~h~~g~~-~~~~~l~~g~~~v~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~ 297 (301)
+..|++|.+++. ..+.++..|++.++.+. .++..+++.++++++|.+..+|++++.+++.......+++
T Consensus 257 ~~~pl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~ 327 (557)
T PRK07059 257 CALPLYHIFALTVCGLLGMRTGGRNILIPNPRDIPGFIKELKKYQVHIFPAVNTLYNALLNNPDFDKLDFS 327 (557)
T ss_pred EeCCcHHHHHHHHHHHHHHhhcceEEEecCCcCHHHHHHHHHHhCCeeeecCHHHHHHHHcCcCcCcCCch
Confidence 899999999876 46677888888777764 5799999999999999999999999999987765555543
|
|
| >TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-35 Score=292.19 Aligned_cols=272 Identities=17% Similarity=0.087 Sum_probs=209.5
Q ss_pred CCCHHHHHHHHhhhcCCccEEEE---------CCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHH
Q 046637 13 PLTPISFLERSAVVYRDRPSVVY---------GDVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFG 83 (301)
Q Consensus 13 ~~~~~~~l~~~~~~~~~~~al~~---------~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA 83 (301)
..++.++|++.++++||++|+++ .++++||+||.++++++|+.|.+.|+++|++|+|+++|+++++++++|
T Consensus 235 ~~~l~~~~~~~a~~~pd~~A~~~~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~gv~~g~~V~i~~~~~~~~i~~~lA 314 (1389)
T TIGR03443 235 RGAIHDIFADNAEKHPDRTCVVETPSFLDPSSKTRSFTYKQINEASNILAHYLLKTGIKRGDVVMIYAYRGVDLVVAVMG 314 (1389)
T ss_pred cCcHHHHHHHHHHhCCCCeEEEeccccccccCCCceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEEecCCHHHHHHHHH
Confidence 35799999999999999999986 347899999999999999999999999999999999999999999999
Q ss_pred hhhccceeeecCCCCCHHHHHHHHHhcCceEEEEcCCch---hhHHHHHHHhccccCCCCceEEccCCCCCCcccccCCC
Q 046637 84 VPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLL---PIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVASSSG 160 (301)
Q Consensus 84 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~---~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 160 (301)
|+++|++++|++|..+.+++.++++.+++++++++.... ..+.............++.+...+...... ... .
T Consensus 315 ~l~~G~~~vpldp~~p~~~~~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~- 390 (1389)
T TIGR03443 315 VLKAGATFSVIDPAYPPARQTIYLSVAKPRALIVIEKAGTLDQLVRDYIDKELELRTEIPALALQDDGSLVG--GSL-E- 390 (1389)
T ss_pred HHhhCcEEeccCCCCcHHHHHHHHHhcCCCEEEEeccccccchhhhhhhhcccccccccceEEecccccccc--ccc-c-
Confidence 999999999999999999999999999999999876421 111111111000000122222211100000 000 0
Q ss_pred CccHHHHHhhc---cccccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhhCCCCCEEEEeccchhhh
Q 046637 161 NLEYESLLAIG---KLREVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPTYLWCVPMFHCN 237 (301)
Q Consensus 161 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~h~~ 237 (301)
....+..... ..........++++++|+|||||||.||||+++|.++..++......+++.++|+++...|++|..
T Consensus 391 -~~~~~~~~~~~~~~~~~~~~~~~~~d~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~d~ 469 (1389)
T TIGR03443 391 -GGETDVLAPYQALKDTPTGVVVGPDSNPTLSFTSGSEGIPKGVLGRHFSLAYYFPWMAKRFGLSENDKFTMLSGIAHDP 469 (1389)
T ss_pred -cccccccccccccccCCCCCcCCCCCceEEEECCCCCCCCCEEEeccHHHHHHHHHHHHhcCCCCCCEEEEecCceecc
Confidence 0000000000 001111234578999999999999999999999999999888888888899999999999999999
Q ss_pred hhHHHHHHHHhCCeEEeeCC---CCHHHHHHHHHhcCcceecCChHHHHHHHcCC
Q 046637 238 GWCLTWAVAAQGGTNVCQRT---VNAKEIFDNITRHKVTHFGGAPTVLNMIANAP 289 (301)
Q Consensus 238 g~~~~~~~l~~g~~~v~~~~---~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~ 289 (301)
++..++.+++.|+++++.+. .++..+++.++++++|+++++|++++.|....
T Consensus 470 ~~~~i~~~L~~G~~l~~~~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~ 524 (1389)
T TIGR03443 470 IQRDMFTPLFLGAQLLVPTADDIGTPGRLAEWMAKYGATVTHLTPAMGQLLSAQA 524 (1389)
T ss_pred hHHHHHHHHhCCCEEEEcChhhccCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcc
Confidence 88888999999999998864 36889999999999999999999999997543
|
Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal. |
| >PRK05852 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-34 Score=263.68 Aligned_cols=266 Identities=19% Similarity=0.208 Sum_probs=207.7
Q ss_pred CCCHHHHHHHHhhhcCCccEEEECC--eeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHhhhccce
Q 046637 13 PLTPISFLERSAVVYRDRPSVVYGD--VQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAGAV 90 (301)
Q Consensus 13 ~~~~~~~l~~~~~~~~~~~al~~~~--~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~ 90 (301)
..++.++|++.++++||++|+++.+ +.+||+||.++++++|..|.+.|+++||+|+++++|++++++++|||+++|++
T Consensus 15 ~~~l~~~l~~~a~~~p~~~ai~~~~~~~~~Ty~~l~~~~~~~a~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~ 94 (534)
T PRK05852 15 GPRIADLVEVAATRLPEAPALVVTADRIAISYRDLARLVDDLAGQLTRSGLLPGDRVALRMGSNAEFVVALLAASRADLV 94 (534)
T ss_pred cccHHHHHHHHHHhCCCCcEEEecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcHHHHHHHHHHHHcCcE
Confidence 5679999999999999999999854 47999999999999999999999999999999999999999999999999999
Q ss_pred eeecCCCCCHHHHHHHHHhcCceEEEEcCCchhhHHHHHHHhccccCCCCceEEccCCCCCCcccccCCCCc--cHHHHH
Q 046637 91 LCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVASSSGNL--EYESLL 168 (301)
Q Consensus 91 ~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~--~~~~~~ 168 (301)
+++++|.++.+++.++++.++++++|++............ . ..+..+.+...... ..+.. .+....
T Consensus 95 ~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~--~----~~~~~~~~~~~~~~------~~~~~~~~~~~~~ 162 (534)
T PRK05852 95 VVPLDPALPIAEQRVRSQAAGARVVLIDADGPHDRAEPTT--R----WWPLTVNVGGDSGP------SGGTLSVHLDAAT 162 (534)
T ss_pred EeecCCCCCcHHHHHHHHhCCCCEEEEcCCCcchhccccc--c----ccceeeeecccccc------ccccccccccccc
Confidence 9999999999999999999999999998643321110000 0 11111221111000 00000 000000
Q ss_pred hhccccccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhhCCCCCEEEEeccchhhhhhHH-HHHHHH
Q 046637 169 AIGKLREVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPTYLWCVPMFHCNGWCL-TWAVAA 247 (301)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~h~~g~~~-~~~~l~ 247 (301)
... ..........++.++|+|||||||.||||.++|.++..++......+.+..+|++++..|++|.+|+.. ++.++.
T Consensus 163 ~~~-~~~~~~~~~~~~~a~il~TSGTTG~PKgv~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~ 241 (534)
T PRK05852 163 EPT-PATSTPEGLRPDDAMIMFTGGTTGLPKMVPWTHANIASSVRAIITGYRLSPRDATVAVMPLYHGHGLIAALLATLA 241 (534)
T ss_pred CCC-ccccccCCCCCCceEEEeCCCCCCCCcEEEecHHHHHHHHHHHHHHhCCCCcceEEEecCcchhHHHHHHHHHHHh
Confidence 000 000111122467899999999999999999999999988888888888999999999999999999875 677788
Q ss_pred hCCeEEeeC--CCCHHHHHHHHHhcCcceecCChHHHHHHHcCCCC
Q 046637 248 QGGTNVCQR--TVNAKEIFDNITRHKVTHFGGAPTVLNMIANAPPV 291 (301)
Q Consensus 248 ~g~~~v~~~--~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~ 291 (301)
.|+++++.+ .+++..+++.++++++|+++++|++++.|.+.+..
T Consensus 242 ~g~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~ 287 (534)
T PRK05852 242 SGGAVLLPARGRFSAHTFWDDIKAVGATWYTAVPTIHQILLERAAT 287 (534)
T ss_pred cCCeEEeCCCcCcCHHHHHHHHHHcCCcEEEcChHHHHHHHhhccc
Confidence 888888754 57899999999999999999999999999886543
|
|
| >TIGR01734 D-ala-DACP-lig D-alanine--poly(phosphoribitol) ligase, subunit 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-35 Score=264.66 Aligned_cols=256 Identities=16% Similarity=0.181 Sum_probs=213.4
Q ss_pred CHHHHHHHHhhhcCCccEEEECCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHhhhccceeeec
Q 046637 15 TPISFLERSAVVYRDRPSVVYGDVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAGAVLCTL 94 (301)
Q Consensus 15 ~~~~~l~~~~~~~~~~~al~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l 94 (301)
++.+.|++.++.+|+++|+.+.++.+||+||.+++.++|..|.+.|+++|++|+++++|+.++++++|||+++|++++|+
T Consensus 1 ~~~~~l~~~a~~~p~~~a~~~~~~~~ty~el~~~~~~~a~~L~~~g~~~~~~V~i~~~~~~~~~~~~la~~~~G~~~v~~ 80 (502)
T TIGR01734 1 KLIEAIQAFAETYPQTIAYRYQGQELTYQQLKEQSDRLAAFIQKRILPKKSPIIVYGHMEPHMLVAFLGSIKSGHAYIPV 80 (502)
T ss_pred CHHHHHHHHHHHCCCceEEEcCCcEEeHHHHHHHHHHHHHHHHHhCCCCCCeEEEEeCCCHHHHHHHHHHHHhCCEEeCC
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCceEEEEcCCchhhHHHHHHHhccccCCCCceEEccCCCCCCcccccCCCCccHHHHHhhcccc
Q 046637 95 NTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVASSSGNLEYESLLAIGKLR 174 (301)
Q Consensus 95 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (301)
++.++.+++.++++..+++.++++........ ..+ ++.++.. .+........
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~-----------~~~-~~~~~~~----------------~~~~~~~~~~ 132 (502)
T TIGR01734 81 DTSIPSERIEMIIEAAGPELVIHTAELSIDAV-----------GTQ-IITLSAL----------------EQAETSGGPV 132 (502)
T ss_pred CCcChHHHHHHHHHhcCCCEEEeccccccccc-----------CCc-eEEchHh----------------hhhhhhcCCc
Confidence 99999999999999999999999876432210 111 2221110 1111111111
Q ss_pred ccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhhCCCCCEEEEeccchhhhhhHHHHHHHHhCCeEEe
Q 046637 175 EVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPTYLWCVPMFHCNGWCLTWAVAAQGGTNVC 254 (301)
Q Consensus 175 ~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~h~~g~~~~~~~l~~g~~~v~ 254 (301)
.......++++++|+|||||||.||+|.++|.++..+.......+....++++++..|++|..++..++.++..|+++++
T Consensus 133 ~~~~~~~~~~~~~il~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~l~~G~~~~~ 212 (502)
T TIGR01734 133 SFDHAVKGDDNYYIIYTSGSTGNPKGVQISHDNLVSFTNWMLADFPLSEGKQFLNQAPFSFDLSVMDLYPCLASGGTLHC 212 (502)
T ss_pred cccccCCCCCeEEEEECCCCCCCCCEEEEecHHHHHHHHHHHHhCCCCCCceEEeecCceechhHHHHHHHHHCCCEEEE
Confidence 11223567889999999999999999999999999888877777888899999999999999998888999999999998
Q ss_pred eCC---CCHHHHHHHHHhcCcceecCChHHHHHHHcCCCCccccccC
Q 046637 255 QRT---VNAKEIFDNITRHKVTHFGGAPTVLNMIANAPPVFENRFRG 298 (301)
Q Consensus 255 ~~~---~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~ 298 (301)
.+. .++..+++.++++++|.+.++|.++..++........++++
T Consensus 213 ~~~~~~~~~~~~~~~i~~~~~~~~~~~p~~~~~~l~~~~~~~~~~~~ 259 (502)
T TIGR01734 213 LDKDITNNFKLLFEELPKTGLNVWVSTPSFVDMCLLDPNFNQENYPH 259 (502)
T ss_pred cCHHHhcCHHHHHHHHHHcCCeEEEEChhHHHHHHhccccccccCCc
Confidence 874 58899999999999999999999999887765544444443
|
This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP - D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides. |
| >PRK12467 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-35 Score=310.53 Aligned_cols=263 Identities=20% Similarity=0.196 Sum_probs=221.7
Q ss_pred cccccCCCCCCCCHHHHHHHHhhhcCCccEEEECCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHH
Q 046637 3 GMIRCSANYVPLTPISFLERSAVVYRDRPSVVYGDVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHF 82 (301)
Q Consensus 3 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~al~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~l 82 (301)
.+|....+....++.++|++.++++||++|+++.++++||+||.++++++|+.|.+.|+++|++|+++++|+++++++++
T Consensus 501 ~~~~~~~~~~~~~~~~~~~~~a~~~pd~~Al~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vv~~l 580 (3956)
T PRK12467 501 RWNAPATEYAPDCVHQLIEAQARQHPERPALVFGEQVLSYAELNRQANRLAHVLIAAGVGPDVLVGIAVERSIEMVVGLL 580 (3956)
T ss_pred hcCCCCCCCCCCCHHHHHHHHHHHCCCCeEEEeCCceEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHH
Confidence 45666666677899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhccceeeecCCCCCHHHHHHHHHhcCceEEEEcCCchhhHHHHHHHhccccCCCCceEEccCCCCCCcccccCCCCc
Q 046637 83 GVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVASSSGNL 162 (301)
Q Consensus 83 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 162 (301)
||+++|++++|++|.++.+++.++++++++++++++........ ... ... ++.++....
T Consensus 581 ail~aG~~~vpld~~~p~~rl~~il~~~~~~~vl~~~~~~~~~~----~~~----~~~-~~~~~~~~~------------ 639 (3956)
T PRK12467 581 AVLKAGGAYVPLDPEYPQDRLAYMLDDSGVRLLLTQSHLLAQLP----VPA----GLR-SLCLDEPAD------------ 639 (3956)
T ss_pred HHHHhCcEEeccCCCChHHHHHHHHHhcCCCEEEechhhhhhcc----ccc----Ccc-EEEeccccc------------
Confidence 99999999999999999999999999999999999874332110 000 112 222222110
Q ss_pred cHHHHHhhccccccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhhCCCCCEEEEeccchhhhhhHHH
Q 046637 163 EYESLLAIGKLREVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPTYLWCVPMFHCNGWCLT 242 (301)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~h~~g~~~~ 242 (301)
...............++++++|+|||||||.||||+++|.++.+.+......+++.+++++++..|++|..++..+
T Consensus 640 ----~~~~~~~~~~~~~~~~~~~a~iiyTSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~~~~fd~~~~~~ 715 (3956)
T PRK12467 640 ----LLCGYSGHNPEVALDPDNLAYVIYTSGSTGQPKGVAISHGALANYVCVIAERLQLAADDSMLMVSTFAFDLGVTEL 715 (3956)
T ss_pred ----cccccCCCCCCCCCCCCCeEEEEECCCCCCCcCEEEEecHHHHHHHHHHHHhcCCCCCCEEEEecCccHhHHHHHH
Confidence 0000011111223567899999999999999999999999999999888888999999999999999999998889
Q ss_pred HHHHHhCCeEEeeC---CCCHHHHHHHHHhcCcceecCChHHHHHHHcCCC
Q 046637 243 WAVAAQGGTNVCQR---TVNAKEIFDNITRHKVTHFGGAPTVLNMIANAPP 290 (301)
Q Consensus 243 ~~~l~~g~~~v~~~---~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~ 290 (301)
+.+++.|+++++.+ .+++..+++.|+++++|++.++|++++.|++...
T Consensus 716 ~~~L~~G~~lv~~~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~ 766 (3956)
T PRK12467 716 FGALASGATLHLLPPDCARDAEAFAALMADQGVTVLKIVPSHLQALLQASR 766 (3956)
T ss_pred HHHHhCCCEEEEcCccccCCHHHHHHHHHHcCCeEEEcCHHHHHHHHhhhc
Confidence 99999999999987 3689999999999999999999999999987543
|
|
| >PRK13383 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-34 Score=261.58 Aligned_cols=249 Identities=22% Similarity=0.284 Sum_probs=204.8
Q ss_pred CCCCHHHHHHHHhhhcCCccEEEECCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHhhhcccee
Q 046637 12 VPLTPISFLERSAVVYRDRPSVVYGDVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAGAVL 91 (301)
Q Consensus 12 ~~~~~~~~l~~~~~~~~~~~al~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~ 91 (301)
.+.++.+.|.+.++++||++|+.++++.+||+|+.+++.++|+.|.+.|+++||+|+++++|++++++++|||+++|+++
T Consensus 33 ~~~~~~~~~~~~a~~~p~~~a~~~~~~~lTy~el~~~~~~la~~L~~~gi~~g~~V~i~~~~~~~~~~~~la~~~~G~v~ 112 (516)
T PRK13383 33 GGTNPYTLLAVTAARWPGRTAIIDDDGALSYRELQRATESLARRLTRDGVAPGRAVGVMCRNGRGFVTAVFAVGLLGADV 112 (516)
T ss_pred cCCcHHHHHHHHHHHCCCCcEEEeCCCcEeHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHhCeEE
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCCCHHHHHHHHHhcCceEEEEcCCchhhHHHHHHHhccccCCCCceEEccCCCCCCcccccCCCCccHHHHHhhc
Q 046637 92 CTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVASSSGNLEYESLLAIG 171 (301)
Q Consensus 92 v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (301)
+|+++.++.+++.++++.++++.+++++...+.+... ...++.++... .... ..
T Consensus 113 vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~----------~~~~~~~~~~~------------~~~~----~~ 166 (516)
T PRK13383 113 VPISTEFRSDALAAALRAHHISTVVADNEFAERIAGA----------DDAVAVIDPAT------------AGAE----ES 166 (516)
T ss_pred EEcCccCCHHHHHHHHhcCCCCEEEEchhHHHHHHhh----------hcceEEeccch------------hhhh----cC
Confidence 9999999999999999999999999987655433221 11222322110 0000 00
Q ss_pred cccccCCCCCCCCceEEEeccCCCCCCCeeeechHHHH--HHHHHHHHHhhCCCCCEEEEeccchhhhhhHHHHHHHHhC
Q 046637 172 KLREVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAY--LNSLAAALFNEMGLMPTYLWCVPMFHCNGWCLTWAVAAQG 249 (301)
Q Consensus 172 ~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~--~~~~~~~~~~~~~~~~~~l~~~p~~h~~g~~~~~~~l~~g 249 (301)
.. .....++.++|+|||||||.||||.++|.... .........+.+..+++++...|++|.+|+...+.++..|
T Consensus 167 ~~----~p~~~~~~~~il~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~~~~~l~~G 242 (516)
T PRK13383 167 GG----RPAVAAPGRIVLLTSGTTGKPKGVPRAPQLRSAVGVWVTILDRTRLRTGSRISVAMPMFHGLGLGMLMLTIALG 242 (516)
T ss_pred CC----CCCCCCCCcEEEECCCCCCCCCeeeecchhhhhhhhHHhHHhhhccCCCCeEEEecCCcchhhHHHHHHHHhcC
Confidence 00 01223566799999999999999999997432 1122233455678899999999999999998888889999
Q ss_pred CeEEeeCCCCHHHHHHHHHhcCcceecCChHHHHHHHcCCC
Q 046637 250 GTNVCQRTVNAKEIFDNITRHKVTHFGGAPTVLNMIANAPP 290 (301)
Q Consensus 250 ~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~ 290 (301)
+++++.+.+++..+++.++++++|.+.++|+++..+.+...
T Consensus 243 ~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~ 283 (516)
T PRK13383 243 GTVLTHRHFDAEAALAQASLHRADAFTAVPVVLARILELPP 283 (516)
T ss_pred CEEEECCCCCHHHHHHHHHHhCCcEEEecHHHHHHHHhccc
Confidence 99999888999999999999999999999999999987643
|
|
| >PRK07868 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-34 Score=278.06 Aligned_cols=279 Identities=12% Similarity=0.107 Sum_probs=207.8
Q ss_pred ccccCCCCCCCCHHHHHHHHhhhcCCccEEEECCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHH
Q 046637 4 MIRCSANYVPLTPISFLERSAVVYRDRPSVVYGDVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFG 83 (301)
Q Consensus 4 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~al~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA 83 (301)
++.... ....++.++|++.++++||++|+++.++.+||+||.++++++|+.|.+.|+++||+|+|+++|+++++++++|
T Consensus 438 ~~~~~~-~~~~sl~~ll~~~a~~~pd~~Al~~~~~~lTY~eL~~ra~rlA~~L~~~Gv~~Gd~VaI~~~n~~e~v~a~lA 516 (994)
T PRK07868 438 LGQIND-HTRISLGRIIAEQARDAPKGEFLLFDGRVHTYEAVNRRINNVVRGLIAVGVRQGDRVGVLMETRPSALVAIAA 516 (994)
T ss_pred hhhcCC-CCCccHHHHHHHHHHHCCCCeEEEeCCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHH
Confidence 344443 6778999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccceeeecCCCCCHHHHHHHHHhcCceEEEEcCCchhhHHHHHHHhccccCCCCceEEccCCCCCCcccccCCCCcc
Q 046637 84 VPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVASSSGNLE 163 (301)
Q Consensus 84 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 163 (301)
|+++|++++|++|. +++.++++.++++++|++.+....+.+ ....+++++.................
T Consensus 517 ~~~aGav~vpl~p~---~~l~~il~~s~~~~li~~~~~~~~~~~----------~~~~iiv~~~~~~~~~~~~~~~~~~~ 583 (994)
T PRK07868 517 LSRLGAVAVLMPPD---TDLAAAVRLGGVTEIITDPTNLEAARQ----------LPGRVLVLGGGESRDLDLPDDADVID 583 (994)
T ss_pred HHhcCCEEEEeCCc---hhHHHHHhccCCeEEEEChHHHHHHHh----------cCceEEEecCCccccccCCcchhhhh
Confidence 99999999999985 689999999999999998765443221 11344444421110000000000011
Q ss_pred HHHHHhhccccc---cCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhhCCCCCEEEEeccchhhhhhH
Q 046637 164 YESLLAIGKLRE---VRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPTYLWCVPMFHCNGWC 240 (301)
Q Consensus 164 ~~~~~~~~~~~~---~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~h~~g~~ 240 (301)
+++........+ ......++++++|+|| ||||.||++.++|.++..........+.+..+|++++..|++|.+|+.
T Consensus 584 ~~~~~~~~~~~~~~~~~~~~~~dd~a~IiyT-gStgtpKpk~vt~~~~~~~~~~~~~~~~l~~~d~~L~~~Pl~h~~gl~ 662 (994)
T PRK07868 584 MEKIDPDAVELPGWYRPNPGLARDLAFIAFS-TAGGELVAKQITNYRWALSAFGTASAAALDRRDTVYCLTPLHHESGLL 662 (994)
T ss_pred hhhcCcccccCCcccCCCCCCCCccEEEEEe-CCCCCcCcEEEehHHHHHHHHhhhhhcCCCCCCeEEEecChHHHhHHH
Confidence 111111100000 0011236889999998 688888888888877655544455566788999999999999999988
Q ss_pred HHHHH-HHhCCeEEeeCCCCHHHHHHHHHhcCcceecCChHHHHHHHcCCCCcccccc
Q 046637 241 LTWAV-AAQGGTNVCQRTVNAKEIFDNITRHKVTHFGGAPTVLNMIANAPPVFENRFR 297 (301)
Q Consensus 241 ~~~~~-l~~g~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~ 297 (301)
..+.+ +..|+++++.+++++..+++.|+++++|+++++|++++.|++.+.....+++
T Consensus 663 ~~l~~~l~gG~~vvl~~~~~~~~~~~~I~~~~vT~~~~~Ps~l~~L~~~~~~~~~~~~ 720 (994)
T PRK07868 663 VSLGGAVVGGSRIALSRGLDPDRFVQEVRQYGVTVVSYTWAMLREVVDDPAFVLHGNH 720 (994)
T ss_pred HHHHHHhccceEEEecCCCCHHHHHHHHHHhCCcEEEeHHHHHHHHHhCcCCccCCCC
Confidence 65554 5455556666789999999999999999999999999999987654444443
|
|
| >PRK06710 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-34 Score=261.69 Aligned_cols=279 Identities=24% Similarity=0.281 Sum_probs=210.2
Q ss_pred CCCHHHHHHHHhhhcCCccEEEECCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHhhhccceee
Q 046637 13 PLTPISFLERSAVVYRDRPSVVYGDVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAGAVLC 92 (301)
Q Consensus 13 ~~~~~~~l~~~~~~~~~~~al~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v 92 (301)
.+++.++|.+.++.+|+++|+++.++.+||+||.+++.++|..|.+.|+++||+|+++++|++++++++|||+++|++++
T Consensus 23 ~~~~~~~~~~~a~~~p~~~a~~~~~~~~ty~eL~~~~~~la~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v 102 (563)
T PRK06710 23 IQPLHKYVEQMASRYPEKKALHFLGKDITFSVFHDKVKRFANYLQKLGVEKGDRVAIMLPNCPQAVIGYYGTLLAGGIVV 102 (563)
T ss_pred cccHHHHHHHHHHHCCCceEEEecCeeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHHHHHHcCeEEe
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCHHHHHHHHHhcCceEEEEcCCchhhHHHHHHHhccccCCCCceEEccCCCCCCccc-----------------
Q 046637 93 TLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGEPVSTV----------------- 155 (301)
Q Consensus 93 ~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~----------------- 155 (301)
|++|..+.+++.++++.++++++++++............. ..+.+++.........+.
T Consensus 103 pi~p~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (563)
T PRK06710 103 QTNPLYTERELEYQLHDSGAKVILCLDLVFPRVTNVQSAT-----KIEHVIVTRIADFLPFPKNLLYPFVQKKQSNLVVK 177 (563)
T ss_pred ccCcccCHHHHHHHHhccCCeEEEEeccchhhhhccchhh-----ccceeEEeccccccccccccccchhhccccccccc
Confidence 9999999999999999999999999876554433322111 122322211100000000
Q ss_pred -ccCCCCccHHHHHhhccccccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHH-HhhCC-CCCEEEEecc
Q 046637 156 -ASSSGNLEYESLLAIGKLREVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAAL-FNEMG-LMPTYLWCVP 232 (301)
Q Consensus 156 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~-~~~~~-~~~~~l~~~p 232 (301)
........|..+...............+++++++|||||||.||+|.++|.++..+...... .+... .++++++..|
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~l~~~p 257 (563)
T PRK06710 178 VSESETIHLWNSVEKEVNTGVEVPCDPENDLALLQYTGGTTGFPKGVMLTHKNLVSNTLMGVQWLYNCKEGEEVVLGVLP 257 (563)
T ss_pred ccccchhhhhhhhhhccccccccccCCCCCEEEEEcCCCCCCCCceEEEehHHHHHHHHHHHhhccCCCCCCceEEEeCc
Confidence 00000011222111111110111133578999999999999999999999999765443322 22333 4468899999
Q ss_pred chhhhhhHH-HHHHHHhCCeEEeeCCCCHHHHHHHHHhcCcceecCChHHHHHHHcCCCCccccc
Q 046637 233 MFHCNGWCL-TWAVAAQGGTNVCQRTVNAKEIFDNITRHKVTHFGGAPTVLNMIANAPPVFENRF 296 (301)
Q Consensus 233 ~~h~~g~~~-~~~~l~~g~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l 296 (301)
++|.+|+.. ++.++..|+++++.+.+++..+++.++++++|++.++|+++..+++.+.....++
T Consensus 258 ~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~ 322 (563)
T PRK06710 258 FFHVYGMTAVMNLSIMQGYKMVLIPKFDMKMVFEAIKKHKVTLFPGAPTIYIALLNSPLLKEYDI 322 (563)
T ss_pred hHHHHHHHHHHHHHHHcCCeEEEcCCCCHHHHHHHHHHcCCeEEeccHHHHHHHHcCCccccCCh
Confidence 999999765 5668889999999988999999999999999999999999999998765444443
|
|
| >PRK05691 peptide synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=311.86 Aligned_cols=265 Identities=16% Similarity=0.162 Sum_probs=221.8
Q ss_pred ccccCCCCC-CCCHHHHHHHHhhhcCCccEEEECCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHH
Q 046637 4 MIRCSANYV-PLTPISFLERSAVVYRDRPSVVYGDVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHF 82 (301)
Q Consensus 4 ~~~~~~~~~-~~~~~~~l~~~~~~~~~~~al~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~l 82 (301)
+|....+++ ..++.++|++.++++||++|+++.++.+||+||.+.++++|+.|.+.|+++|++|+|+++++++++++++
T Consensus 3709 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~Av~~~~~~~tY~eL~~~~~~la~~L~~~gv~~~~~V~v~~~~s~~~~v~~l 3788 (4334)
T PRK05691 3709 CNRSERDYPLEQSYVRLFEAQVAAHPQRIAASCLDQQWSYAELNRAANRLGHALRAAGVGVDQPVALLAERGLDLLGMIV 3788 (4334)
T ss_pred hCCccCCCccccCHHHHHHHHHHhCCCceEEEcCCCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHH
Confidence 444444444 5699999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhccceeeecCCCCCHHHHHHHHHhcCceEEEEcCCchhhHHHHHHHhccccCCCCceEEccCCCCCCcccccCCCCc
Q 046637 83 GVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVASSSGNL 162 (301)
Q Consensus 83 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 162 (301)
|++++|++++||+|..+.+++.++++++++++++++................. ..+.+++.++...
T Consensus 3789 avlkaG~a~vpld~~~p~~r~~~il~~~~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~------------ 3854 (4334)
T PRK05691 3789 GSFKAGAGYLPLDPGLPAQRLQRIIELSRTPVLVCSAACREQARALLDELGCA--NRPRLLVWEEVQA------------ 3854 (4334)
T ss_pred HHHhhCcEEeCCCCCChHHHHHHHHHhcCCCEEEecCcccchhhhhhcccccc--cccceeeeccccc------------
Confidence 99999999999999999999999999999999999987665444433322211 1122222221110
Q ss_pred cHHHHHhhccccccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhhCCCCCEEEEeccchhhhhhHHH
Q 046637 163 EYESLLAIGKLREVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPTYLWCVPMFHCNGWCLT 242 (301)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~h~~g~~~~ 242 (301)
.............+++.++|+|||||||+||||+++|.++.+.+......+++.++++++...|+++..++..+
T Consensus 3855 ------~~~~~~~~~~~~~~~~~ayvi~TSGSTG~PKGV~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~s~~fd~s~~~~ 3928 (4334)
T PRK05691 3855 ------GEVASHNPGIYSGPDNLAYVIYTSGSTGLPKGVMVEQRGMLNNQLSKVPYLALSEADVIAQTASQSFDISVWQF 3928 (4334)
T ss_pred ------ccccccCCCCCCCCCceEEEEECCCCCCCCCEEEeehHHHHHHHHHHHHhcCCCccceEEEecCCchhHHHHHH
Confidence 00000111223567899999999999999999999999999999988888999999999999999999998889
Q ss_pred HHHHHhCCeEEeeCC---CCHHHHHHHHHhcCcceecCChHHHHHHHcC
Q 046637 243 WAVAAQGGTNVCQRT---VNAKEIFDNITRHKVTHFGGAPTVLNMIANA 288 (301)
Q Consensus 243 ~~~l~~g~~~v~~~~---~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~ 288 (301)
+.++..|+++++.+. .++..+++.++++++|++.++|++++.+++.
T Consensus 3929 ~~~l~~G~~l~i~~~~~~~~~~~l~~~~~~~~vt~~~~~Ps~~~~l~~~ 3977 (4334)
T PRK05691 3929 LAAPLFGARVEIVPNAIAHDPQGLLAHVQAQGITVLESVPSLIQGMLAE 3977 (4334)
T ss_pred HHHHhCCCEEEEcCccccCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhh
Confidence 999999999999863 5799999999999999999999999999864
|
|
| >PRK12476 putative fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-34 Score=267.29 Aligned_cols=255 Identities=22% Similarity=0.263 Sum_probs=202.3
Q ss_pred CCCCHHHHHHHHhhhcCCccEEEECC---------eeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHH
Q 046637 12 VPLTPISFLERSAVVYRDRPSVVYGD---------VQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHF 82 (301)
Q Consensus 12 ~~~~~~~~l~~~~~~~~~~~al~~~~---------~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~l 82 (301)
..+++.+++++.++++|+++|+++.+ +.+||+||.+++.++|.+|.+. +++||+|+++++|++++++++|
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~-~~~gd~V~l~~~n~~e~~~~~l 110 (612)
T PRK12476 32 PGTTLISLIERNIANVGDTVAYRYLDHSHSAAGCAVELTWTQLGVRLRAVGARLQQV-AGPGDRVAILAPQGIDYVAGFF 110 (612)
T ss_pred ccCcHHHHHHHHHHhCCCceEEEEEccCCCCCCcceEEeHHHHHHHHHHHHHHHHHh-cCCCCEEEEECCCChhHHHHHH
Confidence 35789999999999999999998732 4899999999999999999987 9999999999999999999999
Q ss_pred Hhhhccceeeec-CCCCC--HHHHHHHHHhcCceEEEEcCCchhhHHHHHHHhccccCCCCceEEccCCCCCCcccccCC
Q 046637 83 GVPMAGAVLCTL-NTRHD--SAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVASSS 159 (301)
Q Consensus 83 A~~~~G~~~v~l-~~~~~--~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 159 (301)
||+++|++++|+ ++..+ .+++.+++++++++++|++......+.+........ ....++.++....
T Consensus 111 A~~~aG~v~vpl~~~~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~--------- 179 (612)
T PRK12476 111 AAIKAGTIAVPLFAPELPGHAERLDTALRDAEPTVVLTTTAAAEAVEGFLRNLPRL--RRPRVIAIDAIPD--------- 179 (612)
T ss_pred HHHHcCceeEecCCCCcchhHHHHHHHHHhCCCCEEEEcHHHHHHHHHHHhhcccc--cCceEEEeccccc---------
Confidence 999999999999 57766 789999999999999999876655444433322100 1234444432210
Q ss_pred CCccHHHHHhhccccccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhh-CCCCCEEEEeccchhhhh
Q 046637 160 GNLEYESLLAIGKLREVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNE-MGLMPTYLWCVPMFHCNG 238 (301)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~-~~~~~~~l~~~p~~h~~g 238 (301)
............++++++|+|||||||.||||++||.++..++......++ +.+++++++.+|++|.+|
T Consensus 180 ----------~~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~l~~~Pl~h~~g 249 (612)
T PRK12476 180 ----------SAGESFVPVELDTDDVSHLQYTSGSTRPPVGVEITHRAVGTNLVQMILSIDLLDRNTHGVSWLPLYHDMG 249 (612)
T ss_pred ----------cccccccCCCCCCCceEEEEeCCCCCCCCceEEeeHHHHHHHHHHHHHHhccCCCCceEEEeCCcccccc
Confidence 000000111245689999999999999999999999999887777666677 788899999999999999
Q ss_pred hHHHHHHHHhCCeEEeeCC--C--CHHHHHHHHH--hcCcceecCChHHHHHHHcC
Q 046637 239 WCLTWAVAAQGGTNVCQRT--V--NAKEIFDNIT--RHKVTHFGGAPTVLNMIANA 288 (301)
Q Consensus 239 ~~~~~~~l~~g~~~v~~~~--~--~~~~~~~~i~--~~~~t~~~~~P~~~~~l~~~ 288 (301)
+...+.+++.|+++++... + +|..+++.++ ++++|.++.+|+++..++..
T Consensus 250 ~~~~~~~~~~gg~~~~~~~~~~~~~p~~~~~~i~~~~~~~t~~~~~P~~~~~l~~~ 305 (612)
T PRK12476 250 LSMIGFPAVYGGHSTLMSPTAFVRRPQRWIKALSEGSRTGRVVTAAPNFAYEWAAQ 305 (612)
T ss_pred hHHHHHHHhcCCeEEEECHHHHHHHHHHHHHHHhhhccCCeEEEeCCcHHHHHHHH
Confidence 8876666667777766642 3 8999999995 58999999999998888764
|
|
| >PRK12316 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=313.94 Aligned_cols=262 Identities=16% Similarity=0.147 Sum_probs=219.9
Q ss_pred ccccCCCCC-CCCHHHHHHHHhhhcCCccEEEECCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHH
Q 046637 4 MIRCSANYV-PLTPISFLERSAVVYRDRPSVVYGDVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHF 82 (301)
Q Consensus 4 ~~~~~~~~~-~~~~~~~l~~~~~~~~~~~al~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~l 82 (301)
++.....++ ..++.++|++.++++||++|+++.++.+||+||.++++++|+.|.+.|+++|++|+++++|++++++++|
T Consensus 500 ~~~~~~~~~~~~~~~~~~~~~a~~~p~~~A~~~~~~~~TY~eL~~~~~~lA~~L~~~gv~~g~~V~l~~~~s~~~i~~~l 579 (5163)
T PRK12316 500 WNATAAEYPLQRGVHRLFEEQVERTPEAPALAFGEETLDYAELNRRANRLAHALIERGVGPDVLVGVAMERSIEMVVALL 579 (5163)
T ss_pred hcCccccCCCCCCHHHHHHHHHHHCCCCeEEEeCCceEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHH
Confidence 344444444 5789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhccceeeecCCCCCHHHHHHHHHhcCceEEEEcCCchhhHHHHHHHhccccCCCCceEEccCCCCCCcccccCCCCc
Q 046637 83 GVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVASSSGNL 162 (301)
Q Consensus 83 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 162 (301)
||+++|++++|++|.++.+++.++++++++++++++......... . ....++.++....
T Consensus 580 a~~~aG~~~vpld~~~p~~rl~~il~~~~~~~~l~~~~~~~~~~~----~-----~~~~~~~~~~~~~------------ 638 (5163)
T PRK12316 580 AILKAGGAYVPLDPEYPAERLAYMLEDSGVQLLLSQSHLGRKLPL----A-----AGVQVLDLDRPAA------------ 638 (5163)
T ss_pred HHHHcCCEEeccCccCcHHHHHHHHHhCCCCEEEEChhhhhhCCc----c-----cCceEEEecCcch------------
Confidence 999999999999999999999999999999999998654332110 0 1112233322110
Q ss_pred cHHHHHhhccccccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhhCCCCCEEEEeccchhhhhhHHH
Q 046637 163 EYESLLAIGKLREVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPTYLWCVPMFHCNGWCLT 242 (301)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~h~~g~~~~ 242 (301)
+ ..............++++++|+|||||||.||||+++|.++.+.+......+++..++++++..|++|..|+..+
T Consensus 639 -~---~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~~~~~~d~~l~~~p~~fd~~~~~~ 714 (5163)
T PRK12316 639 -W---LEGYSEENPGTELNPENLAYVIYTSGSTGKPKGAGNRHRALSNRLCWMQQAYGLGVGDTVLQKTPFSFDVSVWEF 714 (5163)
T ss_pred -h---hccCCCCCCCCCCCCCCeEEEEECCCcCCCCCEeeEcCHHHHHHHHHHHHhcCCCCCCEEEeeCCeehHHHHHHH
Confidence 0 011111112223567899999999999999999999999999999988888999999999999999999998889
Q ss_pred HHHHHhCCeEEeeC---CCCHHHHHHHHHhcCcceecCChHHHHHHHcCCC
Q 046637 243 WAVAAQGGTNVCQR---TVNAKEIFDNITRHKVTHFGGAPTVLNMIANAPP 290 (301)
Q Consensus 243 ~~~l~~g~~~v~~~---~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~ 290 (301)
+.++..|+++++.+ .+++..+++.++++++|++.++|++++.|++.+.
T Consensus 715 ~~~L~~G~~l~i~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~ 765 (5163)
T PRK12316 715 FWPLMSGARLVVAAPGDHRDPAKLVELINREGVDTLHFVPSMLQAFLQDED 765 (5163)
T ss_pred HHHHhCCCEEEECCccccCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhccc
Confidence 99999999999985 4789999999999999999999999999987543
|
|
| >PRK08751 putative long-chain fatty acyl CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=260.55 Aligned_cols=281 Identities=21% Similarity=0.231 Sum_probs=215.1
Q ss_pred CCCHHHHHHHHhhhcCCccEEEECCeeeeHHHHHHHHHHHHHHHH-hcCCCCCCEEEEEcCCCHHHHHHHHHhhhcccee
Q 046637 13 PLTPISFLERSAVVYRDRPSVVYGDVQYTWKETHQRCVKLASGLA-HLGISPGDVVAALAPNVPAMYELHFGVPMAGAVL 91 (301)
Q Consensus 13 ~~~~~~~l~~~~~~~~~~~al~~~~~~~Ty~el~~~~~~la~~L~-~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~ 91 (301)
..++.++|.+.++++|+++|+++.++.+||+||.+++.++|..|. +.|+++|++|+++++|++++++++|||+++|+++
T Consensus 24 ~~~~~~~l~~~~~~~~~~~a~~~~~~~~Ty~el~~~~~~la~~L~~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~ 103 (560)
T PRK08751 24 FRTVAEVFATSVAKFADRPAYHSFGKTITYREADQLVEQFAAYLLGELQLKKGDRVALMMPNCLQYPIATFGVLRAGLTV 103 (560)
T ss_pred CCcHHHHHHHHHHhCCCCceEEECCceeeHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHHhCeEE
Confidence 467899999999999999999999999999999999999999997 6899999999999999999999999999999999
Q ss_pred eecCCCCCHHHHHHHHHhcCceEEEEcCCchhhHHHHHHHhccccCCCCceEEccCCCC-----------------CCcc
Q 046637 92 CTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGE-----------------PVST 154 (301)
Q Consensus 92 v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-----------------~~~~ 154 (301)
+|++|.++.+++.++++.++++++++++.....+.+..... ....++..+.... ....
T Consensus 104 v~l~p~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (560)
T PRK08751 104 VNVNPLYTPRELKHQLIDSGASVLVVIDNFGTTVQQVIADT-----PVKQVITTGLGDMLGFPKAALVNFVVKYVKKLVP 178 (560)
T ss_pred eccCccCCHHHHHHHHHhcCCeEEEEcchhHHHHHHHhhCC-----CccEEEEechhhhcccccchhhhhhhhhhhcccc
Confidence 99999999999999999999999999887665544433221 1222332210000 0000
Q ss_pred cccCCCCccHHHHHhhcccc-ccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhh----CCC-CCEEE
Q 046637 155 VASSSGNLEYESLLAIGKLR-EVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNE----MGL-MPTYL 228 (301)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~----~~~-~~~~l 228 (301)
.....+...+.+........ .......++++++++|||||||.||||.+||.++..+.......+. +.. +++++
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (560)
T PRK08751 179 EYRINGAIRFREALALGRKHSMPTLQIEPDDIAFLQYTGGTTGVAKGAMLTHRNLVANMQQAHQWLAGTGKLEEGCEVVI 258 (560)
T ss_pred ccCCCccccHHHHHhccCCCCCCCCCCCcccEEEEEcCCCCCCCCCEEEEccHHHHHHHHHHHHhhccccccCCCCceEE
Confidence 00111223344443322211 1122356789999999999999999999999999887766554443 233 35778
Q ss_pred EeccchhhhhhHH-HHHHHHhCCeEEeeC-CCCHHHHHHHHHhcCcceecCChHHHHHHHcCCCCccccccC
Q 046637 229 WCVPMFHCNGWCL-TWAVAAQGGTNVCQR-TVNAKEIFDNITRHKVTHFGGAPTVLNMIANAPPVFENRFRG 298 (301)
Q Consensus 229 ~~~p~~h~~g~~~-~~~~l~~g~~~v~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~ 298 (301)
+..|++|.+|+.. .+.++..|++.++.. .+++..+++.++++++|++..+|.++..+.+.+...+.++++
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~l~~ 330 (560)
T PRK08751 259 TALPLYHIFALTANGLVFMKIGGCNHLISNPRDMPGFVKELKKTRFTAFTGVNTLFNGLLNTPGFDQIDFSS 330 (560)
T ss_pred EecChHHHHHHHHhhhhHhhccceEEEecCcCCHHHHHHHHHhcceeEecChHHHHHHHHcCcCcCCcchhh
Confidence 8899999999764 566677787776654 578999999999999999999999999999877665555544
|
|
| >PRK12492 long-chain-fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-33 Score=259.02 Aligned_cols=280 Identities=18% Similarity=0.221 Sum_probs=212.7
Q ss_pred CCCHHHHHHHHhhhcCCccEEEECCeeeeHHHHHHHHHHHHHHHHhc-CCCCCCEEEEEcCCCHHHHHHHHHhhhcccee
Q 046637 13 PLTPISFLERSAVVYRDRPSVVYGDVQYTWKETHQRCVKLASGLAHL-GISPGDVVAALAPNVPAMYELHFGVPMAGAVL 91 (301)
Q Consensus 13 ~~~~~~~l~~~~~~~~~~~al~~~~~~~Ty~el~~~~~~la~~L~~~-gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~ 91 (301)
++++.+.|.+.++++|+++|+.+.++.+||.||.++++++|..|.+. |+++||+|+++++|++++++++|||+++|+++
T Consensus 23 ~~~~~~~l~~~~~~~p~~~a~~~~~~~~Ty~~l~~~~~~~a~~L~~~~gi~~gd~V~i~~~n~~e~~~~~la~~~~G~v~ 102 (562)
T PRK12492 23 YKSVVEVFERSCKKFADRPAFSNLGVTLSYAELERHSAAFAAYLQQHTDLVPGDRIAVQMPNVLQYPIAVFGALRAGLIV 102 (562)
T ss_pred cCcHHHHHHHHHHhCCCCeeEecCCceeeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHcCeEE
Confidence 35899999999999999999999899999999999999999999985 99999999999999999999999999999999
Q ss_pred eecCCCCCHHHHHHHHHhcCceEEEEcCCchhhHHHHHHHhccccCCCCceEEccCC--------------CC---CCcc
Q 046637 92 CTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPEC--------------GE---PVST 154 (301)
Q Consensus 92 v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--------------~~---~~~~ 154 (301)
+++++..+.+++.++++.++++++++++............. ....++..... .. ...+
T Consensus 103 v~~~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (562)
T PRK12492 103 VNTNPLYTAREMRHQFKDSGARALVYLNMFGKLVQEVLPDT-----GIEYLIEAKMGDLLPAAKGWLVNTVVDKVKKMVP 177 (562)
T ss_pred eccCccCCHHHHHHHHhccCceEEEeccccchHHHHhhhcc-----CceEEEeechhhccccccchhccccccccccccc
Confidence 99999999999999999999999999876544433322210 11111110000 00 0000
Q ss_pred cccCCCCccHHHHHhhcccc-ccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhh---------CCC-
Q 046637 155 VASSSGNLEYESLLAIGKLR-EVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNE---------MGL- 223 (301)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~---------~~~- 223 (301)
.........|++........ ........+++++|+|||||||.||||+++|.++..+.......+. +..
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (562)
T PRK12492 178 AYHLPQAVPFKQALRQGRGLSLKPVPVGLDDIAVLQYTGGTTGLAKGAMLTHGNLVANMLQVRACLSQLGPDGQPLMKEG 257 (562)
T ss_pred ccCCcccccHHHHHhccCCCCCCCCCCCcCCeEEEEeCCCCCCCCceEEEechhHHHHHHHHHHHHhcccccccccccCC
Confidence 00011224455554433221 1122356689999999999999999999999999877666554443 222
Q ss_pred CCEEEEeccchhhhhhHH-HHHHHHhCCeEEeeC-CCCHHHHHHHHHhcCcceecCChHHHHHHHcCCCCcccccc
Q 046637 224 MPTYLWCVPMFHCNGWCL-TWAVAAQGGTNVCQR-TVNAKEIFDNITRHKVTHFGGAPTVLNMIANAPPVFENRFR 297 (301)
Q Consensus 224 ~~~~l~~~p~~h~~g~~~-~~~~l~~g~~~v~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~ 297 (301)
++++++.+|++|.+|+.. .+..+..|++.++.. .+++..+++.++++++|++..+|+++..|++.+.....+++
T Consensus 258 ~~~~~~~~pl~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~ 333 (562)
T PRK12492 258 QEVMIAPLPLYHIYAFTANCMCMMVSGNHNVLITNPRDIPGFIKELGKWRFSALLGLNTLFVALMDHPGFKDLDFS 333 (562)
T ss_pred CeEEEEecchHHHHHHHHHHHHHhhcCceEEEecCCcCHHHHHHHHHHhCCceeeCcHHHHHHHHhCcCccccccc
Confidence 357789999999999765 556677888777664 46899999999999999999999999999988765555544
|
|
| >PRK12316 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-34 Score=312.83 Aligned_cols=261 Identities=20% Similarity=0.185 Sum_probs=218.6
Q ss_pred ccccCCCCCC-CCHHHHHHHHhhhcCCccEEEECCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHH
Q 046637 4 MIRCSANYVP-LTPISFLERSAVVYRDRPSVVYGDVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHF 82 (301)
Q Consensus 4 ~~~~~~~~~~-~~~~~~l~~~~~~~~~~~al~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~l 82 (301)
++....+++. .++.++|++.++++|+++|+++.++.+||+||.+++.++|+.|.+.|+++|++|+++++|++++++++|
T Consensus 1992 ~~~~~~~~~~~~~~~~~~~~~a~~~p~~~A~~~~~~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~l~~~~s~~~~~~~l 2071 (5163)
T PRK12316 1992 WDRTPEAYPRGPGVHQRIAEQAARAPEAIAVVFGDQHLSYAELDSRANRLAHRLRARGVGPEVRVAIAAERSFELVVALL 2071 (5163)
T ss_pred cCCCCCCCCCCCCHHHHHHHHHHhCCCCeEEEcCCCeEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHH
Confidence 4555555553 589999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhccceeeecCCCCCHHHHHHHHHhcCceEEEEcCCchhhHHHHHHHhccccCCCCceEEccCCCCCCcccccCCCCc
Q 046637 83 GVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVASSSGNL 162 (301)
Q Consensus 83 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 162 (301)
||+++|++++|++|.++.+++.++++++++++++++......... .. ... .+.++...
T Consensus 2072 Ail~aGa~~vpld~~~p~~rl~~il~~~~~~~vl~~~~~~~~~~~----~~----~~~-~~~~~~~~------------- 2129 (5163)
T PRK12316 2072 AVLKAGGAYVPLDPNYPAERLAYMLEDSGAALLLTQRHLLERLPL----PA----GVA-RLPLDRDA------------- 2129 (5163)
T ss_pred HHHhhceEEeecCCCCCHHHHHHHHHhcCCCEEEeChhhhhhccc----cc----ccc-eEeccchh-------------
Confidence 999999999999999999999999999999999998765432210 00 111 11111100
Q ss_pred cHHHHHhhccccccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhhCCCCCEEEEeccchhhhhhHHH
Q 046637 163 EYESLLAIGKLREVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPTYLWCVPMFHCNGWCLT 242 (301)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~h~~g~~~~ 242 (301)
.+ .............++++++|+|||||||.||||+++|.++.+.+......+++.++++++...|++|..++..+
T Consensus 2130 ~~----~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~~~~~~d~~l~~~~~~fd~~~~~~ 2205 (5163)
T PRK12316 2130 EW----ADYPDTAPAVQLAGENLAYVIYTSGSTGLPKGVAVSHGALVAHCQAAGERYELSPADCELQFMSFSFDGAHEQW 2205 (5163)
T ss_pred hh----hccCccCCCCCCCCCCeEEEEeCccCCCCCCEeEEccHHHHHHHHHHHHhcCCCCcceEEEecCchHHHHHHHH
Confidence 00 00011111233578999999999999999999999999999999888888999999999999999999888889
Q ss_pred HHHHHhCCeEEeeC--CCCHHHHHHHHHhcCcceecCChHHHHHHHcCCC
Q 046637 243 WAVAAQGGTNVCQR--TVNAKEIFDNITRHKVTHFGGAPTVLNMIANAPP 290 (301)
Q Consensus 243 ~~~l~~g~~~v~~~--~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~ 290 (301)
+.++..|+++++.+ .+++..+++.++++++|++.++|++++.|.+...
T Consensus 2206 ~~~L~~G~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~ 2255 (5163)
T PRK12316 2206 FHPLLNGARVLIRDDELWDPEQLYDEMERHGVTILDFPPVYLQQLAEHAE 2255 (5163)
T ss_pred HHHHhCCCEEEeCCcccCCHHHHHHHHHHcCCeEEEcChHHHHHHHhhhh
Confidence 99999999997765 3689999999999999999999999999987643
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-34 Score=282.68 Aligned_cols=278 Identities=18% Similarity=0.186 Sum_probs=221.7
Q ss_pred CCCCCCHHHHHHHHhhhcCCccEEEEC-CeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHhhhcc
Q 046637 10 NYVPLTPISFLERSAVVYRDRPSVVYG-DVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAG 88 (301)
Q Consensus 10 ~~~~~~~~~~l~~~~~~~~~~~al~~~-~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G 88 (301)
.....++.+.+++.++++|+++|+++. ++.+||+|+.++++++|+.|.+ ++++||+|+++++|+++++++++||+++|
T Consensus 611 ~~~~~~l~~~~~~~a~~~p~~~a~~~~~~~~~Ty~el~~~~~~~a~~L~~-~~~~g~~V~i~~~n~~~~~~~~la~~~~G 689 (1146)
T PRK08633 611 KEALPPLAEAWIDTAKRNWSRLAVADSTGGELSYGKALTGALALARLLKR-ELKDEENVGILLPPSVAGALANLALLLAG 689 (1146)
T ss_pred cCCCCCHHHHHHHHHHhcCCCcEEEcCCCCcCcHHHHHHHHHHHHHHHHH-hCCCCCeEEEECCCchHHHHHHHHHHHcC
Confidence 344678999999999999999999974 5799999999999999999987 48999999999999999999999999999
Q ss_pred ceeeecCCCCCHHHHHHHHHhcCceEEEEcCCchhhHHHHH--HHhccccCCCCceEEccCCCCCCcccccCCCCccHHH
Q 046637 89 AVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAF--EILSKTSAKLPLLVLVPECGEPVSTVASSSGNLEYES 166 (301)
Q Consensus 89 ~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 166 (301)
++++|++|..+.+++.++++++++++++++++..+.+.+.. ...+ ....++..++..... .....+.+
T Consensus 690 ~v~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~------~~~~~~~~ 759 (1146)
T PRK08633 690 KVPVNLNYTASEAALKSAIEQAQIKTVITSRKFLEKLKNKGFDLELP----ENVKVIYLEDLKAKI------SKVDKLTA 759 (1146)
T ss_pred CEEEEeCCCcCHHHHHHHHHHcCCCEEEEcHHHHHHHhccCCchhcc----cCceEEEeehhcccc------chhHHHHH
Confidence 99999999999999999999999999999876554432110 0111 233444444321100 00112222
Q ss_pred HHhhcccc----c--cCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhhCCCCCEEEEeccchhhhhhH
Q 046637 167 LLAIGKLR----E--VRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPTYLWCVPMFHCNGWC 240 (301)
Q Consensus 167 ~~~~~~~~----~--~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~h~~g~~ 240 (301)
........ . ......++++++|+|||||||.||||.+||.++..+.......++..++|++++.+|++|.+|+.
T Consensus 760 ~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~ 839 (1146)
T PRK08633 760 LLAARLLPARLLKRLYGPTFKPDDTATIIFSSGSEGEPKGVMLSHHNILSNIEQISDVFNLRNDDVILSSLPFFHSFGLT 839 (1146)
T ss_pred HHHhccCCHHHHHhhccCCCCCCCEEEEEECCCCCCCCceEEechHHHHHHHHHHHHhcCCCCCCEEEEcCcHHHHHhHH
Confidence 22111000 0 01345678999999999999999999999999999888888888889999999999999999987
Q ss_pred H-HHHHHHhCCeEEeeC-CCCHHHHHHHHHhcCcceecCChHHHHHHHcCCCCccccccC
Q 046637 241 L-TWAVAAQGGTNVCQR-TVNAKEIFDNITRHKVTHFGGAPTVLNMIANAPPVFENRFRG 298 (301)
Q Consensus 241 ~-~~~~l~~g~~~v~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~ 298 (301)
. .+.++..|+++++.+ .+++..+++.++++++|++.++|++++.+.+.+...+.++++
T Consensus 840 ~~~~~~l~~g~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~ 899 (1146)
T PRK08633 840 VTLWLPLLEGIKVVYHPDPTDALGIAKLVAKHRATILLGTPTFLRLYLRNKKLHPLMFAS 899 (1146)
T ss_pred HHHHHHHHCCCEEEEeCCCCCHHHHHHHHHHcCCeEEEecHHHHHHHHhccccCcccCCC
Confidence 5 788899999999876 578999999999999999999999999999876665555554
|
|
| >PRK06060 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-34 Score=269.06 Aligned_cols=244 Identities=20% Similarity=0.199 Sum_probs=200.8
Q ss_pred CCHHHHHHHHhhh--cCCccEEEECCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHhhhcccee
Q 046637 14 LTPISFLERSAVV--YRDRPSVVYGDVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAGAVL 91 (301)
Q Consensus 14 ~~~~~~l~~~~~~--~~~~~al~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~ 91 (301)
.|+.++|.++++. +||++|+++. +.+||+||.++++++|..|.+.|+++|++|+++++|+++++++++||+++|+++
T Consensus 4 ~~~~~~~~~~a~~~~~pd~~a~~~~-~~~Ty~eL~~~~~~lA~~L~~~g~~~g~~V~i~~~~~~~~~~~~la~~~aG~~~ 82 (705)
T PRK06060 4 GNLAGLLAEQASEAGWYDRPAFYAA-DVVTHGQIHDGAARLGEVLRNRGLSSGDRVLLCLPDSPDLVQLLLACLARGVMA 82 (705)
T ss_pred cCHHHHHHHHHhhccCCCceEEEec-CceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhCcEE
Confidence 4789999998886 7999999875 489999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCCCHHHHHHHHHhcCceEEEEcCCchhhHHHHHHHhccccCCCCceEEccCCCCCCcccccCCCCccHHHHHhhc
Q 046637 92 CTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVASSSGNLEYESLLAIG 171 (301)
Q Consensus 92 v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (301)
+|++|.++.+++.+++++++++++|++......+.. . .++. ..+.....
T Consensus 83 vpi~p~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~-----------~-~~~~-------------------~~~~~~~~ 131 (705)
T PRK06060 83 FLANPELHRDDHALAARNTEPALVVTSDALRDRFQP-----------S-RVAE-------------------AAELMSEA 131 (705)
T ss_pred EecCCCCCHHHHHHHHhcCCCcEEEEchHHhhhhcc-----------c-ccch-------------------hhhhhhhc
Confidence 999999999999999999999999998654322110 0 0000 00000000
Q ss_pred c--ccccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHH-HHhhCCCCCEEEEeccchhhhhhH-HHHHHHH
Q 046637 172 K--LREVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAA-LFNEMGLMPTYLWCVPMFHCNGWC-LTWAVAA 247 (301)
Q Consensus 172 ~--~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~-~~~~~~~~~~~l~~~p~~h~~g~~-~~~~~l~ 247 (301)
. .........++++++|+|||||||.||||+++|.++..+..... ..+.+..++++++..|++|.+++. .++.++.
T Consensus 132 ~~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~l~ 211 (705)
T PRK06060 132 ARVAPGGYEPMGGDALAYATYTSGTTGPPKAAIHRHADPLTFVDAMCRKALRLTPEDTGLCSARMYFAYGLGNSVWFPLA 211 (705)
T ss_pred cccCCCCCCCCCCCCeEEEEECCCCCCCCcEEEEccccHHHHHHHHHHHhhCCCCcceeEEeccchhhcchhHHHHHHHh
Confidence 0 00011124568899999999999999999999999988776553 457788899999999999999875 4778899
Q ss_pred hCCeEEeeC-CCCHHHHHHHHHhcCcceecCChHHHHHHHcCC
Q 046637 248 QGGTNVCQR-TVNAKEIFDNITRHKVTHFGGAPTVLNMIANAP 289 (301)
Q Consensus 248 ~g~~~v~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~ 289 (301)
.|+++++.+ .+++..+++.++++++|+++++|+++..+++..
T Consensus 212 ~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~ 254 (705)
T PRK06060 212 TGGSAVINSAPVTPEAAAILSARFGPSVLYGVPNFFARVIDSC 254 (705)
T ss_pred cCCEEEEeCCCCCHHHHHHHHHhcCCeEEeeHHHHHHHHHHhc
Confidence 999999886 578999999999999999999999999998754
|
|
| >PRK04813 D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-34 Score=258.71 Aligned_cols=257 Identities=19% Similarity=0.231 Sum_probs=213.2
Q ss_pred CCHHHHHHHHhhhcCCccEEEECCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHhhhccceeee
Q 046637 14 LTPISFLERSAVVYRDRPSVVYGDVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAGAVLCT 93 (301)
Q Consensus 14 ~~~~~~l~~~~~~~~~~~al~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~ 93 (301)
+++.+.|++.++.+|+++++.+.++.+||+||.+.+.++|..|.+.|+++|++|+++.+|+.++++++|||++.|++++|
T Consensus 2 ~~~~~~l~~~a~~~p~~~~~~~~~~~~t~~~l~~~~~~~a~~l~~~g~~~~~~v~~~~~~~~~~~~~~~a~~~~G~~~~~ 81 (503)
T PRK04813 2 MDIIETIEEFAQTQPDFPAYDYLGEKLTYGQLKEDSDALAAFIDSLKLPDKSPIIVFGHMSPEMLATFLGAVKAGHAYIP 81 (503)
T ss_pred chHHHHHHHHHHhCCCceEEEeCCcEEeHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEec
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHhcCceEEEEcCCchhhHHHHHHHhccccCCCCceEEccCCCCCCcccccCCCCccHHHHHhhccc
Q 046637 94 LNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVASSSGNLEYESLLAIGKL 173 (301)
Q Consensus 94 l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (301)
+++..+.+++.++++..+++++++++...... . .++ ++..+ .+.+.......
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~----~~~-~~~~~----------------~~~~~~~~~~~ 133 (503)
T PRK04813 82 VDVSSPAERIEMIIEVAKPSLIIATEELPLEI-------L----GIP-VITLD----------------ELKDIFATGNP 133 (503)
T ss_pred CCCCChHHHHHHHHHhcCCCEEEecccccccc-------c----CCc-EEehH----------------Hhhhhhhcccc
Confidence 99999999999999999999999987541100 0 111 11111 01111110111
Q ss_pred cccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhhCCCCCEEEEeccchhhhhhHHHHHHHHhCCeEE
Q 046637 174 REVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPTYLWCVPMFHCNGWCLTWAVAAQGGTNV 253 (301)
Q Consensus 174 ~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~h~~g~~~~~~~l~~g~~~v 253 (301)
........++++++++|||||||.||+|.++|.++..........+.+..+++++...|++|..++..++.++..|++++
T Consensus 134 ~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~g~~~v 213 (503)
T PRK04813 134 YDFDHAVKGDDNYYIIFTSGTTGKPKGVQISHDNLVSFTNWMLEDFALPEGPQFLNQAPYSFDLSVMDLYPTLASGGTLV 213 (503)
T ss_pred ccccccCCCCCcEEEEECCCCCCCCcEEEeehHHHHHHHHHHHHHcCCCcCceeeecCCcchhHhHHHHHHHHhcCCEEE
Confidence 11123356788999999999999999999999999988887777888889999999999999999887888999999999
Q ss_pred eeCC---CCHHHHHHHHHhcCcceecCChHHHHHHHcCCCCccccccC
Q 046637 254 CQRT---VNAKEIFDNITRHKVTHFGGAPTVLNMIANAPPVFENRFRG 298 (301)
Q Consensus 254 ~~~~---~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~ 298 (301)
+.+. .++..+++.++++++|++..+|++++.++........++++
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~t~~~~~p~~~~~~~~~~~~~~~~~~~ 261 (503)
T PRK04813 214 ALPKDMTANFKQLFETLPQLPINVWVSTPSFADMCLLDPSFNEEHLPN 261 (503)
T ss_pred EcChhhhcCHHHHHHHHHHcCCeEEEeChHHHHHHHHhhccCcccCCC
Confidence 9874 58999999999999999999999999887665544445444
|
|
| >PRK05691 peptide synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-34 Score=305.57 Aligned_cols=260 Identities=16% Similarity=0.130 Sum_probs=219.3
Q ss_pred cccccCCCCCCCCHHHHHHHHhhhcCCccEEEECCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHH
Q 046637 3 GMIRCSANYVPLTPISFLERSAVVYRDRPSVVYGDVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHF 82 (301)
Q Consensus 3 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~al~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~l 82 (301)
+++..+......++.++|++.++++||++|+++.++.+||+||.++++++|+.|.+.|+++|++|+++++|++++++++|
T Consensus 1120 ~~~~~~~~~~~~~l~~~~~~~a~~~p~~~Al~~~~~~lTY~eL~~~~~~lA~~L~~~gv~~g~~V~i~~~~s~~~iv~~l 1199 (4334)
T PRK05691 1120 QWGQAPCAPAQAWLPELLNEQARQTPERIALVWDGGSLDYAELHAQANRLAHYLRDKGVGPDVCVAIAAERSPQLLVGLL 1199 (4334)
T ss_pred hccCCCCCCccCCHHHHHHHHHHhCCCCeEEEECCceEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHH
Confidence 45666666667889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhccceeeecCCCCCHHHHHHHHHhcCceEEEEcCCchhhHHHHHHHhccccCCCCceEEccCCCCCCcccccCCCCc
Q 046637 83 GVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVASSSGNL 162 (301)
Q Consensus 83 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 162 (301)
|++++|++++|++|.++.+++.++++++++++++++......+... . .. ..+.++....
T Consensus 1200 ailkaG~~~vpld~~~p~~rl~~il~~~~~~~vi~~~~~~~~~~~~----~----~~-~~~~~~~~~~------------ 1258 (4334)
T PRK05691 1200 AILKAGGAYVPLDPDYPAERLAYMLADSGVELLLTQSHLLERLPQA----E----GV-SAIALDSLHL------------ 1258 (4334)
T ss_pred HHHHhCCEEEecCcCChHHHHHHHHHhcCCCEEEecchhhhhcccc----c----Cc-eEEeeccccc------------
Confidence 9999999999999999999999999999999999987654322110 0 11 1122111100
Q ss_pred cHHHHHhhccccccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhhCCCCCEEEEeccchhhhhhHHH
Q 046637 163 EYESLLAIGKLREVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPTYLWCVPMFHCNGWCLT 242 (301)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~h~~g~~~~ 242 (301)
. ............++++++++|||||||.||||+++|.++...+......+++.+++++++..|++|..++..+
T Consensus 1259 --~----~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~~~~~~d~~l~~~~~~fd~s~~~~ 1332 (4334)
T PRK05691 1259 --D----SWPSQAPGLHLHGDNLAYVIYTSGSTGQPKGVGNTHAALAERLQWMQATYALDDSDVLMQKAPISFDVSVWEC 1332 (4334)
T ss_pred --c----ccCCCCCCCCCCCCCeEEEEEcCCCCCCCceeEeecHHHHHHHHHHHHhcCCCCCCEEEEeCCccHHHHHHHH
Confidence 0 0000111123567899999999999999999999999999988888888899999999999999999998888
Q ss_pred HHHHHhCCeEEeeC---CCCHHHHHHHHHhcCcceecCChHHHHHHHcCC
Q 046637 243 WAVAAQGGTNVCQR---TVNAKEIFDNITRHKVTHFGGAPTVLNMIANAP 289 (301)
Q Consensus 243 ~~~l~~g~~~v~~~---~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~ 289 (301)
+.++..|+++++.+ .+++..+++.++++++|++.++|++++.|.+.+
T Consensus 1333 ~~~L~~G~~l~i~~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~l~~l~~~~ 1382 (4334)
T PRK05691 1333 FWPLITGCRLVLAGPGEHRDPQRIAELVQQYGVTTLHFVPPLLQLFIDEP 1382 (4334)
T ss_pred HHHHhCCCEEEEcCccccCCHHHHHHHHHHcCCeEEECcHHHHHHHHhCc
Confidence 99999999999985 468999999999999999999999999998654
|
|
| >PRK09088 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-33 Score=254.96 Aligned_cols=246 Identities=21% Similarity=0.253 Sum_probs=199.7
Q ss_pred HHHhhhcCCccEEEE--CCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHhhhccceeeecCCCC
Q 046637 21 ERSAVVYRDRPSVVY--GDVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAGAVLCTLNTRH 98 (301)
Q Consensus 21 ~~~~~~~~~~~al~~--~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~ 98 (301)
+..++.+||++|+.+ .++.+||+|+.+.+.++|..|.+.|+++|++|+++++|++++++++|||+++|++++|+++..
T Consensus 2 ~~~a~~~p~~~a~~~~~~~~~~ty~~l~~~v~~~a~~l~~~g~~~~~~v~i~~~~~~~~~~~~la~~~~G~~~v~~~~~~ 81 (488)
T PRK09088 2 AFHARLQPQRLAAVDLALGRRWTYAELDALVGRLAAVLRRRGCVDGERLAVLARNSVWLVALHFACARVGAIYVPLNWRL 81 (488)
T ss_pred chhhhhCCCceEEEecCCCcEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCeEEEeeCccC
Confidence 456788999999987 678999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHhcCceEEEEcCCchhhHHHHHHHhccccCCCCceEEccCCCCCCcccccCCCCccHHHHHhhccccccCC
Q 046637 99 DSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVASSSGNLEYESLLAIGKLREVRR 178 (301)
Q Consensus 99 ~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (301)
+.+++.++++.++++++++++..... .. ..+.++. +.+..... ......
T Consensus 82 ~~~~~~~~~~~~~~~~ii~~~~~~~~-------------~~-~~~~~~~----------------~~~~~~~~-~~~~~~ 130 (488)
T PRK09088 82 SASELDALLQDAEPRLLLGDDAVAAG-------------RT-DVEDLAA----------------FIASADAL-EPADTP 130 (488)
T ss_pred CHHHHHHHHHhCCCCEEEEcchhhcc-------------cc-cccchhh----------------hhhhcccc-ccccCC
Confidence 99999999999999999998644321 00 0000000 00000000 001112
Q ss_pred CCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhhCCCCCEEEEeccchhhhhhHH-HHHHHHhCCeEEeeCC
Q 046637 179 PKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPTYLWCVPMFHCNGWCL-TWAVAAQGGTNVCQRT 257 (301)
Q Consensus 179 ~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~h~~g~~~-~~~~l~~g~~~v~~~~ 257 (301)
....+++++++|||||||.||+|.+||.++...+...........++++++..|++|.+|+.. ++.++..|+++++.+.
T Consensus 131 ~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~~~~l~~g~~~~~~~~ 210 (488)
T PRK09088 131 SIPPERVSLILFTSGTSGQPKGVMLSERNLQQTAHNFGVLGRVDAHSSFLCDAPMFHIIGLITSVRPVLAVGGSILVSNG 210 (488)
T ss_pred CCCCCCceEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhhCCCCCcEEEEecchHHHHHHHHHHHHHHhcCCEEEEcCC
Confidence 245678999999999999999999999999887777766667788999999999999999875 5667888999998888
Q ss_pred CCHHHHHHHHH--hcCcceecCChHHHHHHHcCCCCcccccc
Q 046637 258 VNAKEIFDNIT--RHKVTHFGGAPTVLNMIANAPPVFENRFR 297 (301)
Q Consensus 258 ~~~~~~~~~i~--~~~~t~~~~~P~~~~~l~~~~~~~~~~l~ 297 (301)
+++..++..+. ++++|+++++|++++.+.+.+.....+++
T Consensus 211 ~~~~~~~~~~~~~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~ 252 (488)
T PRK09088 211 FEPKRTLGRLGDPALGITHYFCVPQMAQAFRAQPGFDAAALR 252 (488)
T ss_pred CCHHHHHHHHHhhccCCcEEeeHHHHHHHHHhCcCcCccccc
Confidence 99999999886 48999999999999999987654444443
|
|
| >PRK08974 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-32 Score=252.05 Aligned_cols=280 Identities=20% Similarity=0.238 Sum_probs=212.6
Q ss_pred CCCHHHHHHHHhhhcCCccEEEECCeeeeHHHHHHHHHHHHHHHHh-cCCCCCCEEEEEcCCCHHHHHHHHHhhhcccee
Q 046637 13 PLTPISFLERSAVVYRDRPSVVYGDVQYTWKETHQRCVKLASGLAH-LGISPGDVVAALAPNVPAMYELHFGVPMAGAVL 91 (301)
Q Consensus 13 ~~~~~~~l~~~~~~~~~~~al~~~~~~~Ty~el~~~~~~la~~L~~-~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~ 91 (301)
..++.++|...++++|+++|+++.++.+||+||.++++++|..|.+ .|+++|++|+++++|++++++++|||+++|+++
T Consensus 22 ~~~l~~~l~~~a~~~p~~~a~~~~~~~lTy~~l~~~~~~la~~L~~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~ 101 (560)
T PRK08974 22 YQSLVDMFEQAVARYADQPAFINMGEVMTFRKLEERSRAFAAYLQNGLGLKKGDRVALMMPNLLQYPIALFGILRAGMIV 101 (560)
T ss_pred cccHHHHHHHHHHhCCCCceEEECCccccHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHcCcEE
Confidence 4579999999999999999999999999999999999999999985 899999999999999999999999999999999
Q ss_pred eecCCCCCHHHHHHHHHhcCceEEEEcCCchhhHHHHHHHhccccCCCCceEEccCCCCCCc-----------------c
Q 046637 92 CTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGEPVS-----------------T 154 (301)
Q Consensus 92 v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-----------------~ 154 (301)
+|++|..+.+++.++++.+++++++++++..+.+.+..... ....++.......... +
T Consensus 102 v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (560)
T PRK08974 102 VNVNPLYTPRELEHQLNDSGAKAIVIVSNFAHTLEKVVFKT-----PVKHVILTRMGDQLSTAKGTLVNFVVKYIKRLVP 176 (560)
T ss_pred eccCccCCHHHHHHHHHhcCceEEEEeccccHHHHHHhhhc-----CcceEEEecccccccccccccccchhhhcccccc
Confidence 99999999999999999999999999877665555443321 2233222111100000 0
Q ss_pred cccCCCCccHHHHHhhcccc-ccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhh---CCCCCEEEEe
Q 046637 155 VASSSGNLEYESLLAIGKLR-EVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNE---MGLMPTYLWC 230 (301)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~---~~~~~~~l~~ 230 (301)
.........+.+........ .......++++++|+|||||||.||+|.++|.++..+.......+. ...+++++..
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (560)
T PRK08974 177 KYHLPDAISFRSALHKGRRMQYVKPELVPEDLAFLQYTGGTTGVAKGAMLTHRNMLANLEQAKAAYGPLLHPGKELVVTA 256 (560)
T ss_pred cccCCCcccHHHHhhccCCCCCCCCCCCCCCeEEEEECCCCCCCCcEEEEchHHHHHHHHHHHHhhccccCCCccEEEEe
Confidence 00001112222222222111 1112356789999999999999999999999999877654433332 2446788899
Q ss_pred ccchhhhhhHH-HHHHHHhCCeEEeeC-CCCHHHHHHHHHhcCcceecCChHHHHHHHcCCCCcccccc
Q 046637 231 VPMFHCNGWCL-TWAVAAQGGTNVCQR-TVNAKEIFDNITRHKVTHFGGAPTVLNMIANAPPVFENRFR 297 (301)
Q Consensus 231 ~p~~h~~g~~~-~~~~l~~g~~~v~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~ 297 (301)
.|++|.+|+.. .+.++..|+++++.. ..++..+++.++++++|++..+|++++.|++.+.....+++
T Consensus 257 ~p~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~ 325 (560)
T PRK08974 257 LPLYHIFALTVNCLLFIELGGQNLLITNPRDIPGFVKELKKYPFTAITGVNTLFNALLNNEEFQELDFS 325 (560)
T ss_pred CcHHHHHHHHHHHHHHhhcCCeEEEecCccCHHHHHHHHHhcCcceEcCcHHHHHHHHhCcCcccCCcc
Confidence 99999999764 566788888877764 56889999999999999999999999999987655544443
|
|
| >PRK05851 long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-33 Score=257.87 Aligned_cols=244 Identities=15% Similarity=0.126 Sum_probs=190.0
Q ss_pred CC-HHHHHHHHhhhcCCccEEEECC----eeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHhhhcc
Q 046637 14 LT-PISFLERSAVVYRDRPSVVYGD----VQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAG 88 (301)
Q Consensus 14 ~~-~~~~l~~~~~~~~~~~al~~~~----~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G 88 (301)
|| +.+.|+++++++|+++|+++.+ +++||+||.++++++|..|.+. ++||+|+++++|++++++++|||+++|
T Consensus 1 ~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~ty~el~~~~~~lA~~L~~~--~~g~~V~l~~~~~~e~~~~~la~~~~G 78 (525)
T PRK05851 1 MNELAAALSDAMTASGRDLVVLDRESGLWRRHPWPEVHGRAENVAARLLDR--DRPGAVGLVGEPTVELVAAIQGAWLAG 78 (525)
T ss_pred CchHHHHHHHHhcCCCCceEEeCCCCCcceeecHHHHHHHHHHHHHHHHhc--CCCCeEEEEcCCCHHHHHHHHHHHHcC
Confidence 34 7899999999999999999976 7899999999999999999988 899999999999999999999999999
Q ss_pred ceeeecCC-------CCCHHHHHHHHHhcCceEEEEcCCchhhHHHHHHHhccccCCCCceEEccCCCCCCcccccCCCC
Q 046637 89 AVLCTLNT-------RHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVASSSGN 161 (301)
Q Consensus 89 ~~~v~l~~-------~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 161 (301)
+++++++. ....+++.++++.++++++|++......+.... . . + .+.+...
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~---~----~---~-~~~~~~~----------- 136 (525)
T PRK05851 79 AAVSILPGPVRGADDGRWADATLTRFAGIGVRTVLSHGSHLERLRAVD---S----S---V-TVHDLAT----------- 136 (525)
T ss_pred CCCcCCCCCCCccchhhHHHHHHHHHHhcCCCEEEeCHHHHHHHHHhh---c----c---c-ccccccc-----------
Confidence 98654321 122355667789999999999876543332211 0 0 1 0110000
Q ss_pred ccHHHHHhhccccccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhhCC-CCCEEEEeccchhhhhhH
Q 046637 162 LEYESLLAIGKLREVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMG-LMPTYLWCVPMFHCNGWC 240 (301)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~-~~~~~l~~~p~~h~~g~~ 240 (301)
..... .........++++++|+|||||||.||||++||.++..++......+++. .+|++++..|++|.+|+.
T Consensus 137 -----~~~~~-~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~ 210 (525)
T PRK05851 137 -----AAHTN-RSASLTPPDSGGPAVLQGTAGSTGTPRTAILSPGAVLSNLRGLNARVGLDAATDVGCSWLPLYHDMGLA 210 (525)
T ss_pred -----ccccc-ccccCCCCCCCCeEEEEeCCCCCCCCcEEEecHHHHHHHHHHHHHHhCCCCCCCeEEEcCCCccCccHH
Confidence 00000 00000124678999999999999999999999999999888888888888 899999999999999998
Q ss_pred HHHHHHHhCCeEEeeC--CC--CHHHHHHHHHhcCcceecCChHHHHHHHc
Q 046637 241 LTWAVAAQGGTNVCQR--TV--NAKEIFDNITRHKVTHFGGAPTVLNMIAN 287 (301)
Q Consensus 241 ~~~~~l~~g~~~v~~~--~~--~~~~~~~~i~~~~~t~~~~~P~~~~~l~~ 287 (301)
.++.++..|+++++.+ .+ ++..+++.++++++|++..+|.++..+.+
T Consensus 211 ~~~~~l~~G~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~p~~~~~~l~~ 261 (525)
T PRK05851 211 FLLTAALAGAPLWLAPTTAFSASPFRWLSWLSDSRATLTAAPNFAYNLIGK 261 (525)
T ss_pred HHHHHHHcCCeEEEcCHHHHHHCHHHHHHHHHHhCCeEEeCCcHHHHHHHH
Confidence 8888999999999986 24 68899999999999988665555555543
|
|
| >KOG1180 consensus Acyl-CoA synthetase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-34 Score=243.62 Aligned_cols=271 Identities=18% Similarity=0.254 Sum_probs=227.1
Q ss_pred CCCHHHHHHHHhhhcCCccEEEECC-----------------------eeeeHHHHHHHHHHHHHHHHhcCCCCCCE-EE
Q 046637 13 PLTPISFLERSAVVYRDRPSVVYGD-----------------------VQYTWKETHQRCVKLASGLAHLGISPGDV-VA 68 (301)
Q Consensus 13 ~~~~~~~l~~~~~~~~~~~al~~~~-----------------------~~~Ty~el~~~~~~la~~L~~~gv~~g~~-V~ 68 (301)
-.+++++|+..+++++++.++...+ .++||+|+..++..++++|.+.|++++++ ++
T Consensus 40 ~~Tl~~~~~~~~~k~g~~~~mGtR~li~~h~ek~~dGK~f~k~~Lg~Y~w~sy~ev~~~~~~~gsGL~~lG~k~~e~k~~ 119 (678)
T KOG1180|consen 40 ASTLYELFEECVKKFGKKDAMGTRELIKEHEEKQVDGKTFEKYELGDYKWMSYNEVYERVHNFGSGLVKLGLKPKETKIA 119 (678)
T ss_pred cccHHHHHHHHHHhcCCCccccHHHHHHHHhhccCCCeEEEEEeccceeeecHHHHHHHHHHHHHHHHHhCCCCCCCeEE
Confidence 5678999999999999999987532 47999999999999999999999997766 99
Q ss_pred EEcCCCHHHHHHHHHhhhccceeeecCCCCCHHHHHHHHHhcCceEEEEcCCchhhHHHHHHHhccccCCCCceEEccCC
Q 046637 69 ALAPNVPAMYELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPEC 148 (301)
Q Consensus 69 i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 148 (301)
|+++-+.+|.+++.||++-+..+|.++..+..+.+.+-|+.++++.+|++.+.+..+...+...+ .++.+|.++..
T Consensus 120 iFa~TraeWm~ta~gC~~q~ipvVT~Y~TLGeeal~hsl~Et~~~~i~T~~~LL~kl~~~l~~~~----~vk~II~~d~i 195 (678)
T KOG1180|consen 120 IFAETRAEWMITAQGCFSQNIPVVTAYATLGEEALIHSLNETESTAIFTDSELLPKLKAPLKQAK----TVKHIIYFDPI 195 (678)
T ss_pred EEecchHHHHHHHHHHHhcCCeEEEEehhcChhhhhhhhccccceEEEeCHHHHHHHHHHHhccC----ceeEEEEecCC
Confidence 99999999999999999999999999999999999999999999999999999888777777666 78999998853
Q ss_pred CCCCccc------ccCCCCccHHHHHhhccccc-cCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHh-h
Q 046637 149 GEPVSTV------ASSSGNLEYESLLAIGKLRE-VRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFN-E 220 (301)
Q Consensus 149 ~~~~~~~------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~-~ 220 (301)
+...... .......+|+++.+-+.... .+..+.++|+|+|+|||||||.||||+++|.|+++.+....... .
T Consensus 196 d~~~~~~~v~~i~~p~i~i~Sf~~v~~lG~~~~~~~~~P~p~Dia~IMYTSGSTG~PKGVml~H~NiVA~~~G~~~~v~~ 275 (678)
T KOG1180|consen 196 DYDAAKDDVNSIVRPDIKIISFDDVEKLGKENEIPPHPPKPSDIACIMYTSGSTGLPKGVMLTHSNIVAGVTGVGENVPE 275 (678)
T ss_pred CCccchhhhhhhccCCeEEEEHHHHHhhCCcCCCCCCCCCCCceEEEEEcCCCCCCCceEEEecccHHhhhhhhcccCcc
Confidence 3221111 12344578999998887772 22334789999999999999999999999999999988877666 6
Q ss_pred CCCCCEEEEeccchhhhhhHHHHHHHHhCCeEEeeCCCCHHH--------HHHHHHhcCcceecCChHHHHHHHc
Q 046637 221 MGLMPTYLWCVPMFHCNGWCLTWAVAAQGGTNVCQRTVNAKE--------IFDNITRHKVTHFGGAPTVLNMIAN 287 (301)
Q Consensus 221 ~~~~~~~l~~~p~~h~~g~~~~~~~l~~g~~~v~~~~~~~~~--------~~~~i~~~~~t~~~~~P~~~~~l~~ 287 (301)
+.+.|+++..+|+.|++.+.+=+.++.-|+.+-+.+..+..+ ---.+...|||.+.++|.++.++.+
T Consensus 276 lg~~D~yi~yLPLAHIlEl~aE~~~ft~G~~iGY~S~~TLtdts~ki~kg~kGD~~~lkPTiM~~VpAV~drVrK 350 (678)
T KOG1180|consen 276 LGPKDRYIAYLPLAHILELTAELVCFTWGGRIGYSSPLTLTDTSSKIKKGCKGDLTELKPTIMAAVPAVMDRVRK 350 (678)
T ss_pred cCCCceEEEechHHHHHHHHHHHHHHhhCCEeecCCcceecccchhhccCCcCccccccchhhhhhHHHHHHHHH
Confidence 789999999999999999999899999999988764221111 1123567799999999999998765
|
|
| >PRK05850 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-33 Score=257.97 Aligned_cols=251 Identities=20% Similarity=0.232 Sum_probs=193.9
Q ss_pred CCHHHHHHHHhhhcCCccEEEECC---------eeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHh
Q 046637 14 LTPISFLERSAVVYRDRPSVVYGD---------VQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGV 84 (301)
Q Consensus 14 ~~~~~~l~~~~~~~~~~~al~~~~---------~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~ 84 (301)
+++.+.|++.+..+|+++|+++.+ +.+||+||.+++.++|+.|.+.| .+||+|+++++|++++++++|||
T Consensus 1 ~s~~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~lty~eL~~~v~~~A~~L~~~g-~~gd~V~l~~~n~~~~~~~~lA~ 79 (578)
T PRK05850 1 SSVPSLLRERASLQPDDAAFTFIDYEQDPAGVAETLTWSQLYRRTLNVAEELRRHG-STGDRAVILAPQGLEYIVAFLGA 79 (578)
T ss_pred CcHHHHHHHHHhcCCCceEEEEEccCCCCCCceeeecHHHHHHHHHHHHHHHHHhC-CCCCEEEEEcCCcccHHHHHHHH
Confidence 468899999999999999999742 68999999999999999999999 68999999999999999999999
Q ss_pred hhccceeeecCC---CCCHHHHHHHHHhcCceEEEEcCCchhhHHHHHHHhccccCCCCceEEccCCCCCCcccccCCCC
Q 046637 85 PMAGAVLCTLNT---RHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVASSSGN 161 (301)
Q Consensus 85 ~~~G~~~v~l~~---~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 161 (301)
+++|++++|+++ ..+.+++.++++.+++++++++++....+.+........ ....++.++....
T Consensus 80 ~~~G~v~vpl~~~~~~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~----------- 146 (578)
T PRK05850 80 LQAGLIAVPLSVPQGGAHDERVSAVLRDTSPSVVLTTSAVVDDVTEYVAPQPGQ--SAPPVIEVDLLDL----------- 146 (578)
T ss_pred HHcCceEEecCCCCccchHHHHHHHHHhcCCCEEEEcHHHHHHHHHHHhhcccc--cccceEeeccccc-----------
Confidence 999999999997 457899999999999999999887665544332211100 1222332221100
Q ss_pred ccHHHHHhhccccccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHh-h-----CCCCCEEEEeccchh
Q 046637 162 LEYESLLAIGKLREVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFN-E-----MGLMPTYLWCVPMFH 235 (301)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~-~-----~~~~~~~l~~~p~~h 235 (301)
. .. .........++++++|+|||||||.||||+++|.+++.++......+ . ...++++++..|++|
T Consensus 147 ---~---~~--~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h 218 (578)
T PRK05850 147 ---D---SP--RGSDARPRDLPSTAYLQYTSGSTRTPAGVMVSHRNVIANFEQLMSDYFGDTGGVPPPDTTVVSWLPFYH 218 (578)
T ss_pred ---c---cC--CccccCCCCCCCeEEEEeCCCCCCCCceEEEeHHHHHHHHHHHHHhhccccccCCCCcceEEEECCCCC
Confidence 0 00 00111235668999999999999999999999999988776554332 2 345789999999999
Q ss_pred hhhhHH-HHHHHHhCCeEEeeCC----CCHHHHHHHHHhcCcceecCChHHHHHHH
Q 046637 236 CNGWCL-TWAVAAQGGTNVCQRT----VNAKEIFDNITRHKVTHFGGAPTVLNMIA 286 (301)
Q Consensus 236 ~~g~~~-~~~~l~~g~~~v~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~ 286 (301)
.+|+.. ++.+++.|+++++.+. .+|..+++.+++++++.....+..+..+.
T Consensus 219 ~~g~~~~~~~~l~~G~~~~~~~~~~~~~~p~~~~~~i~~~~~~~~~~p~~~~~~~~ 274 (578)
T PRK05850 219 DMGLVLGVCAPILGGCPAVLTSPVAFLQRPARWMQLLASNPHAFSAAPNFAFELAV 274 (578)
T ss_pred CchhHHHHHHHHhcCCcEEEeCHHHHHHCHHHHHHHHHHcCCeEEeCCcHHHHHHH
Confidence 999874 7888999999998864 27999999999999986654444344443
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-33 Score=273.96 Aligned_cols=267 Identities=20% Similarity=0.170 Sum_probs=209.9
Q ss_pred CCCCCHHHHHHHHhhhcC-CccEEEE-CCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHhhhcc
Q 046637 11 YVPLTPISFLERSAVVYR-DRPSVVY-GDVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAG 88 (301)
Q Consensus 11 ~~~~~~~~~l~~~~~~~~-~~~al~~-~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G 88 (301)
....++.+.|.+.++++| ++.++.+ +++.+||+|+.++++++|+.|++ |+++||+|+++++|+++++++++||+++|
T Consensus 628 ~~~~~~~~~l~~~~~~~~~~~~ai~~~~~~~~Ty~el~~~~~~lA~~L~~-g~~~gd~V~i~~~n~~~~~~~~la~~~~G 706 (1140)
T PRK06814 628 DYDRTLFEALIEAAKIHGFKKLAVEDPVNGPLTYRKLLTGAFVLGRKLKK-NTPPGENVGVMLPNANGAAVTFFALQSAG 706 (1140)
T ss_pred cccCCHHHHHHHHHHHcCCCCeEeECCCCCccCHHHHHHHHHHHHHHHHh-cCCCCCeEEEEcCCchHHHHHHHHHHHCC
Confidence 345778899999999987 4567666 46799999999999999999975 99999999999999999999999999999
Q ss_pred ceeeecCCCCCHHHHHHHHHhcCceEEEEcCCchhhH--HHHHHHhccccCCCCceEEccCCCCCCcccccCCCCccHHH
Q 046637 89 AVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIA--QGAFEILSKTSAKLPLLVLVPECGEPVSTVASSSGNLEYES 166 (301)
Q Consensus 89 ~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~--~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 166 (301)
++++|++|..+.+++.++++++++++++++++..+.. .+..+..+ ....++.+++..+.. .....+.+
T Consensus 707 ~v~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~----~~~~~i~~~~~~~~~------~~~~~~~~ 776 (1140)
T PRK06814 707 RVPAMINFSAGIANILSACKAAQVKTVLTSRAFIEKARLGPLIEALE----FGIRIIYLEDVRAQI------GLADKIKG 776 (1140)
T ss_pred CEEEEcCCCCCHHHHHHHHHHcCCCEEEecHHHHhhhcchhHHHHhc----cCceEEEehHhhccC------ChHHHHHH
Confidence 9999999999999999999999999999987654322 11112221 223444444321100 00011112
Q ss_pred HHhhccccccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhhCCCCCEEEEeccchhhhhhH-HHHHH
Q 046637 167 LLAIGKLREVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPTYLWCVPMFHCNGWC-LTWAV 245 (301)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~h~~g~~-~~~~~ 245 (301)
...............++++++|+|||||||.||||.+||.++..+.......+++.++|++++.+|++|.+|+. ..+.+
T Consensus 777 ~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~ 856 (1140)
T PRK06814 777 LLAGRFPLVYFCNRDPDDPAVILFTSGSEGTPKGVVLSHRNLLANRAQVAARIDFSPEDKVFNALPVFHSFGLTGGLVLP 856 (1140)
T ss_pred HhhccCCccccCCCCCCCcEEEEECCCccCCCcEEEecHHHHHHHHHHHHHhhCCCCcCEEEEecchHHHHHHHHHHHHH
Confidence 11111111111135678999999999999999999999999998888888888899999999999999999985 47788
Q ss_pred HHhCCeEEeeCC-CCHHHHHHHHHhcCcceecCChHHHHHHHcC
Q 046637 246 AAQGGTNVCQRT-VNAKEIFDNITRHKVTHFGGAPTVLNMIANA 288 (301)
Q Consensus 246 l~~g~~~v~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~ 288 (301)
+..|+++++.++ .++..+.+.++++++|++..+|++++.+.+.
T Consensus 857 l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~ 900 (1140)
T PRK06814 857 LLSGVKVFLYPSPLHYRIIPELIYDTNATILFGTDTFLNGYARY 900 (1140)
T ss_pred HHcCCEEEEecCcccHHHHHHHHHhcCCEEEEecHHHHHHHHhh
Confidence 999999998874 5678899999999999999999999998865
|
|
| >PRK13391 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-32 Score=249.11 Aligned_cols=257 Identities=21% Similarity=0.244 Sum_probs=204.0
Q ss_pred HHHHhhhcCCccEEEE--CCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHhhhccceeeecCCC
Q 046637 20 LERSAVVYRDRPSVVY--GDVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAGAVLCTLNTR 97 (301)
Q Consensus 20 l~~~~~~~~~~~al~~--~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~ 97 (301)
....++++|+++|+++ .++.+||+||.+.+.++++.|.+.|+++|++|+++++|++++++++|||++.|++++++++.
T Consensus 3 ~~~~a~~~p~~~a~~~~~~~~~~ty~~l~~~~~~la~~L~~~g~~~~~~V~v~~~~~~~~~~~~~a~~~~G~~~~~l~~~ 82 (511)
T PRK13391 3 PGIHAQTTPDKPAVIMASTGEVVTYRELDERSNRLAHLFRSLGLKRGDHVAIFMENNLRYLEVCWAAERSGLYYTCVNSH 82 (511)
T ss_pred hhhhHhhCCCceEEEecCCCCEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhccEEeccccc
Confidence 3467888999999987 56789999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHhcCceEEEEcCCchhhHHHHHHHhccccCCCCceEEccCCCCCCcccccCCCCccHHHHHhhccccccC
Q 046637 98 HDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVASSSGNLEYESLLAIGKLREVR 177 (301)
Q Consensus 98 ~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (301)
.+.+++.++++.++++.++++........+...... .....+.++.... ......+.+...... ..
T Consensus 83 ~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~---~~ 148 (511)
T PRK13391 83 LTPAEAAYIVDDSGARALITSAAKLDVARALLKQCP----GVRHRLVLDGDGE-------LEGFVGYAEAVAGLP---AT 148 (511)
T ss_pred cCHHHHHHHHhccCCcEEEEchhhHHHHHHHHhcCC----CceEEEEecCCCC-------CcccccHHHHhcCCC---CC
Confidence 999999999999999999999877665555544333 2333344332111 011223443332211 11
Q ss_pred CCCCCCCceEEEeccCCCCCCCeeee--chHHHHH---HHHHHHHHhhCCCCCEEEEeccchhhhhhHHHHHHHHhCCeE
Q 046637 178 RPKDECDPIALNYTSGTTSSPKGVIC--SHRGAYL---NSLAAALFNEMGLMPTYLWCVPMFHCNGWCLTWAVAAQGGTN 252 (301)
Q Consensus 178 ~~~~~~~~~~i~~TSGtTG~pK~v~~--s~~~l~~---~~~~~~~~~~~~~~~~~l~~~p~~h~~g~~~~~~~l~~g~~~ 252 (301)
.....++.++++|||||||.||||.+ +|.++.. ........+.+..++++++..|++|.+|+...+.++..|+++
T Consensus 149 ~~~~~~~~a~il~TSGtTG~PKgv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~h~~~~~~~~~~~~~g~~~ 228 (511)
T PRK13391 149 PIADESLGTDMLYSSGTTGRPKGIKRPLPEQPPDTPLPLTAFLQRLWGFRSDMVYLSPAPLYHSAPQRAVMLVIRLGGTV 228 (511)
T ss_pred CCCCcccccEEEECCCCCCCCCEEEEccccchhhhhhHHHHHHHHhcCCCCCCeEEEcCCHHHHHHHHHHHHHHHcCceE
Confidence 11234467899999999999999995 4665432 223344556778899999999999999988778889999999
Q ss_pred EeeCCCCHHHHHHHHHhcCcceecCChHHHHHHHcCCC
Q 046637 253 VCQRTVNAKEIFDNITRHKVTHFGGAPTVLNMIANAPP 290 (301)
Q Consensus 253 v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~ 290 (301)
++.+.+++..+++.++++++|++.++|+++..+.+...
T Consensus 229 ~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~ 266 (511)
T PRK13391 229 IVMEHFDAEQYLALIEEYGVTHTQLVPTMFSRMLKLPE 266 (511)
T ss_pred EECCCCCHHHHHHHHHHhCCeEEEehHHHHHHHHhCch
Confidence 99998999999999999999999999999999887543
|
|
| >PRK09029 O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-32 Score=247.37 Aligned_cols=234 Identities=20% Similarity=0.225 Sum_probs=195.5
Q ss_pred CHHHHH-HHHhhhcCCccEEEECCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHhhhccceeee
Q 046637 15 TPISFL-ERSAVVYRDRPSVVYGDVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAGAVLCT 93 (301)
Q Consensus 15 ~~~~~l-~~~~~~~~~~~al~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~ 93 (301)
++.+.+ ...++++|+++|+++.++.+||+||.+.++++|..|.+.|+++|++|+++++|+++++++++||+++|++++|
T Consensus 3 ~~~~~~~~~~a~~~~~~~a~~~~~~~~ty~el~~~~~~~a~~L~~~g~~~~~~v~l~~~~~~~~~~~~la~~~~G~~~v~ 82 (458)
T PRK09029 3 IFSDWPWRHWAQVRPQAIALRLNDEVLTWQQLCARIDQLAAGFAQQGVVEGSGVALRGKNSPETLLAYLALLQCGARVLP 82 (458)
T ss_pred hhhcChHHHHHHhCCCceeeecCCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCCCHHHHHHHHHHHHcCCEEee
Confidence 334444 4568899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHhcCceEEEEcCCchhhHHHHHHHhccccCCCCceEEccCCCCCCcccccCCCCccHHHHHhhccc
Q 046637 94 LNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVASSSGNLEYESLLAIGKL 173 (301)
Q Consensus 94 l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (301)
+++..+.+++..+++.+++++++++++.... . .+..... .. . .
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~-----------~~~~~~~-~~----------------------~--~ 125 (458)
T PRK09029 83 LNPQLPQPLLEELLPSLTLDFALVLEGENTF-S-----------ALTSLHL-QL----------------------V--E 125 (458)
T ss_pred cCCCCCHHHHHHHHHhcCCCEEEEcCcccch-h-----------hcccccc-cc----------------------c--c
Confidence 9999999999999999999999998765321 0 0110000 00 0 0
Q ss_pred cccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhhCCCCCEEEEeccchhhhhhHHHHHHHHhCCeEE
Q 046637 174 REVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPTYLWCVPMFHCNGWCLTWAVAAQGGTNV 253 (301)
Q Consensus 174 ~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~h~~g~~~~~~~l~~g~~~v 253 (301)
........++++++++|||||||.||||.+||.+++.........++...+++++...|++|.+|+...+.++..|++++
T Consensus 126 ~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~h~~g~~~~~~~l~~G~~v~ 205 (458)
T PRK09029 126 GAHAVAWQPQRLATMTLTSGSTGLPKAAVHTAQAHLASAEGVLSLMPFTAQDSWLLSLPLFHVSGQGIVWRWLYAGATLV 205 (458)
T ss_pred ccCcccCCCCCeEEEEECCCCCCCCCEEEEeHHHHHHHHHHHhhcCCCCccceEEEecCcHhhhhhHHHHHHHhCCceEE
Confidence 00112356788999999999999999999999999998888888888899999999999999999887788899999999
Q ss_pred eeCCCCHHHHHHHHHhcCcceecCChHHHHHHHcCCC
Q 046637 254 CQRTVNAKEIFDNITRHKVTHFGGAPTVLNMIANAPP 290 (301)
Q Consensus 254 ~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~ 290 (301)
+.+. ..+++.+. ++|.+..+|+++..++....
T Consensus 206 ~~~~---~~~~~~i~--~~t~~~~~P~~~~~l~~~~~ 237 (458)
T PRK09029 206 VRDK---QPLEQALA--GCTHASLVPTQLWRLLDNRS 237 (458)
T ss_pred eCCh---HHHHHHHh--hceeeecChHHHHHHHhccc
Confidence 8764 56777774 79999999999999987644
|
|
| >PRK13390 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-32 Score=247.49 Aligned_cols=248 Identities=23% Similarity=0.293 Sum_probs=191.5
Q ss_pred HHhhhcCCccEEEEC--CeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHhhhccceeeecCCCCC
Q 046637 22 RSAVVYRDRPSVVYG--DVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAGAVLCTLNTRHD 99 (301)
Q Consensus 22 ~~~~~~~~~~al~~~--~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~ 99 (301)
..++++|+++|+.+. ++.+||+||.+.++++|+.|.+.|+++||+|+++++|++++++++|||+++|++++|+++..+
T Consensus 5 ~~a~~~p~~~a~~~~~~~~~lTy~el~~~~~~la~~L~~~gv~~gd~V~i~~~n~~~~~~~~la~~~~Ga~~~~l~~~~~ 84 (501)
T PRK13390 5 THAQIAPDRPAVIVAETGEQVSYRQLDDDSAALARVLYDAGLRTGDVVALLSDNSPEALVVLWAALRSGLYITAINHHLT 84 (501)
T ss_pred hhhhhCCCCcEEEecCCCeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEeccccCCC
Confidence 467789999999874 689999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCceEEEEcCCchhhHHHHHHHhccccCCCCceEEccCCCCCCcccccCCCCccHHHHHhhccccccCCC
Q 046637 100 SAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVASSSGNLEYESLLAIGKLREVRRP 179 (301)
Q Consensus 100 ~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (301)
.+++.++++.++++++++++.......+... .....+.+.... .....+++....... ..
T Consensus 85 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-------~~~~~~~~~~~~---------~~~~~~~~~~~~~~~----~~ 144 (501)
T PRK13390 85 APEADYIVGDSGARVLVASAALDGLAAKVGA-------DLPLRLSFGGEI---------DGFGSFEAALAGAGP----RL 144 (501)
T ss_pred HHHHHHHHHhcCCcEEEEcchhhhHHHHhhh-------ccceEEEecCcc---------cccccHHHHhcccCC----CC
Confidence 9999999999999999998654332222111 112122222110 011233333221110 01
Q ss_pred CCCCCceEEEeccCCCCCCCeeee--chHHHHHHH---H-HHHHHhhCCCCCEEEEeccchhhhhhHHHHHHHHhCCeEE
Q 046637 180 KDECDPIALNYTSGTTSSPKGVIC--SHRGAYLNS---L-AAALFNEMGLMPTYLWCVPMFHCNGWCLTWAVAAQGGTNV 253 (301)
Q Consensus 180 ~~~~~~~~i~~TSGtTG~pK~v~~--s~~~l~~~~---~-~~~~~~~~~~~~~~l~~~p~~h~~g~~~~~~~l~~g~~~v 253 (301)
....+.++|+|||||||.||||++ +|.++..+. . .....+.+..++++++..|++|.+++...+..+..|++++
T Consensus 145 ~~~~~~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~h~~~~~~~~~~~~~g~~~~ 224 (501)
T PRK13390 145 TEQPCGAVMLYSSGTTGFPKGIQPDLPGRDVDAPGDPIVAIARAFYDISESDIYYSSAPIYHAAPLRWCSMVHALGGTVV 224 (501)
T ss_pred CCCcccEEEEeCCCCCCCCCEEEeeccccccccchhhhHhhHHHHhCCCCCCeEEecccchhhhHHHHHHHHHhcCceEE
Confidence 122357999999999999999995 555554322 1 1233567788999999999999999765555677899999
Q ss_pred eeCCCCHHHHHHHHHhcCcceecCChHHHHHHHcCC
Q 046637 254 CQRTVNAKEIFDNITRHKVTHFGGAPTVLNMIANAP 289 (301)
Q Consensus 254 ~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~ 289 (301)
+.+.+++..+++.++++++|++.++|+++..|++..
T Consensus 225 ~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~ 260 (501)
T PRK13390 225 LAKRFDAQATLGHVERYRITVTQMVPTMFVRLLKLD 260 (501)
T ss_pred EcCCcCHHHHHHHHHHcCCeEEEecHHHHHHHHhcc
Confidence 988899999999999999999999999999998754
|
|
| >PRK09192 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-32 Score=250.80 Aligned_cols=251 Identities=22% Similarity=0.170 Sum_probs=196.6
Q ss_pred CCCHHHHHHHHhhhcCCccEEEECC---eeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHhhhccc
Q 046637 13 PLTPISFLERSAVVYRDRPSVVYGD---VQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAGA 89 (301)
Q Consensus 13 ~~~~~~~l~~~~~~~~~~~al~~~~---~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~ 89 (301)
-+++.++|+..++.+|+..++...+ +.+||+||.+++.++|.+|.+.|+++||+|+++++|++++++++|||+++|+
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ty~eL~~~~~~~a~~L~~~gi~~gd~V~l~~~n~~~~~~~~lA~~~~G~ 99 (579)
T PRK09192 20 FPTLVEALDYAALGEAGMNFYDRRGQLEEALPYQTLRARAEAGARRLLALGLKPGDRVALIAETDGDFVEAFFACQYAGL 99 (579)
T ss_pred hhhHHHHHHHhhccCCceEEEecCCCEEEEecHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCchhHHHHHHHHHHcCC
Confidence 3688999999999998776654332 6799999999999999999999999999999999999999999999999999
Q ss_pred eeeecCCCCC-------HHHHHHHHHhcCceEEEEcCCchhhHHHHHHHhccccCCCCceEEccCCCCCCcccccCCCCc
Q 046637 90 VLCTLNTRHD-------SAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVASSSGNL 162 (301)
Q Consensus 90 ~~v~l~~~~~-------~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 162 (301)
+++|+++..+ .+++.++++.++++++++++.....+.+.... .+.+...
T Consensus 100 ~~v~i~~~~~~~~~~~~~~~l~~~i~~~~~~~il~~~~~~~~~~~~~~~-------~~~~~~~----------------- 155 (579)
T PRK09192 100 VPVPLPLPMGFGGRESYIAQLRGMLASAQPAAIITPDELLPWVNEATHG-------NPLLHVL----------------- 155 (579)
T ss_pred eeEeccCCcccccchHHHHHHHHHHHhcCCCEEEeChHHHHHHHHhhcc-------cccccee-----------------
Confidence 9999976432 68999999999999999987665444333211 1111111
Q ss_pred cHHHHHhhccccccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHH-HhhCCCCCEEEEeccchhhhhhHH
Q 046637 163 EYESLLAIGKLREVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAAL-FNEMGLMPTYLWCVPMFHCNGWCL 241 (301)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~-~~~~~~~~~~l~~~p~~h~~g~~~ 241 (301)
.+.++..............++++++|+|||||||.||||.++|.+++.+...... .+++.++|+++..+|++|.+|+..
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~ 235 (579)
T PRK09192 156 SHAWFKALPEADVALPRPTPDDIAYLQYSSGSTRFPRGVIITHRALMANLRAISHDGLKVRPGDRCVSWLPFYHDMGLVG 235 (579)
T ss_pred ehhhhcccCCCccccCCCCCCCeEEEEecCCCCCCCceEEeeHHHHHHHHHHHHhhcccCCCCCeEEEeCCCCCcchhHH
Confidence 1111111111111112355689999999999999999999999999988877766 778899999999999999999874
Q ss_pred -HHHHHHhCCeEEeeCC----CCHHHHHHHHHhcCcceecCChHHHHHHHc
Q 046637 242 -TWAVAAQGGTNVCQRT----VNAKEIFDNITRHKVTHFGGAPTVLNMIAN 287 (301)
Q Consensus 242 -~~~~l~~g~~~v~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~ 287 (301)
++.++..|+++++.+. .++..+++.+.++++|.++..|.++..+.+
T Consensus 236 ~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~~~~~~l~~~ 286 (579)
T PRK09192 236 FLLTPVATQLSVDYLPTRDFARRPLQWLDLISRNRGTISYSPPFGYELCAR 286 (579)
T ss_pred HHHHHHHhCCeeEeeCHHHHHHCHHHHHHHHHhcCcEEEeCCcHHHHHHHH
Confidence 6667888999877752 378999999999999988876665655543
|
|
| >PRK08308 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-32 Score=239.51 Aligned_cols=208 Identities=16% Similarity=0.124 Sum_probs=185.0
Q ss_pred EEEECCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHhhhccceeeecCCCCCHHHHHHHHHhcC
Q 046637 32 SVVYGDVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSE 111 (301)
Q Consensus 32 al~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~ 111 (301)
++++.++++||+||.++++++|+.|. .|+++|++|+++++|+++++++++|++++|++++|+++..+.+++..++++++
T Consensus 1 ~~~~~~~~~ty~el~~~~~~~a~~l~-~~~~~g~~V~i~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~~~~~~~~~~ 79 (414)
T PRK08308 1 MLIVNDEEYSKSDFDLRLQRYEEMEQ-FQEAAGNRFAVCLKDPFDIITLVFFLKEKGASVLPIHPDTPKEAAIRMAKRAG 79 (414)
T ss_pred CeEecCceecHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCChHHHHHHHHHHHCCeEEEecCCCCCHHHHHHHHHhCC
Confidence 36778899999999999999999985 68999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEcCCchhhHHHHHHHhccccCCCCceEEccCCCCCCcccccCCCCccHHHHHhhccccccCCCCCCCCceEEEec
Q 046637 112 AKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVASSSGNLEYESLLAIGKLREVRRPKDECDPIALNYT 191 (301)
Q Consensus 112 ~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~T 191 (301)
++++++++.... .. . .....++++++++||
T Consensus 80 ~~~~i~~~~~~~---------------~~------~-----------------------------~~~~~~~~~~~i~~T 109 (414)
T PRK08308 80 CHGLLYGESDFT---------------KL------E-----------------------------AVNYLAEEPSLLQYS 109 (414)
T ss_pred CCEEEecCcccc---------------cc------c-----------------------------CCCCCCCCceEEEEC
Confidence 999998753110 00 0 001456789999999
Q ss_pred cCCCCCCCeeeechHHHHHHHHHHHHHhhCCCCCEEEEeccchhhhhhHH-HHHHHHhCCeEEeeCCCCHHHHHHHHHhc
Q 046637 192 SGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPTYLWCVPMFHCNGWCL-TWAVAAQGGTNVCQRTVNAKEIFDNITRH 270 (301)
Q Consensus 192 SGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~h~~g~~~-~~~~l~~g~~~v~~~~~~~~~~~~~i~~~ 270 (301)
|||||.||||++||.++..+.......+....+++.+...|++|.+|+.. ++.++..|+++++.+.+++..+++.++++
T Consensus 110 SGtTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~l~~~ 189 (414)
T PRK08308 110 SGTTGEPKLIRRSWTEIDREIEAYNEALNCEQDETPIVACPVTHSYGLICGVLAALTRGSKPVIITNKNPKFALNILRNT 189 (414)
T ss_pred CCCCCCCcEEEEehHhHHHHHHHHHHhhCCCcccEEEEecCcHHHHHHHHHHHHHHHcCCEEEecCCCCHHHHHHHHHHh
Confidence 99999999999999999988888778888889999999999999999764 78889999999999989999999999999
Q ss_pred CcceecCChHHHHHHHcCCC
Q 046637 271 KVTHFGGAPTVLNMIANAPP 290 (301)
Q Consensus 271 ~~t~~~~~P~~~~~l~~~~~ 290 (301)
++|.++++|+++..+.+...
T Consensus 190 ~~t~~~~~P~~~~~l~~~~~ 209 (414)
T PRK08308 190 PQHILYAVPLMLHILGRLLP 209 (414)
T ss_pred CCeEEEcCHHHHHHHHhcCC
Confidence 99999999999999987643
|
|
| >PRK12406 long-chain-fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-31 Score=240.25 Aligned_cols=250 Identities=26% Similarity=0.351 Sum_probs=195.1
Q ss_pred cEEEECCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHhhhccceeeecCCCCCHHHHHHHHHhc
Q 046637 31 PSVVYGDVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHS 110 (301)
Q Consensus 31 ~al~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~ 110 (301)
.|++.+++.+||+||.++++++|.+|.+.|+++|++|+++++|+++++++++||+++|+++++++|..+.+++.++++.+
T Consensus 3 ~~~~~~~~~~Ty~el~~~~~~la~~l~~~g~~~g~~V~v~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~ 82 (509)
T PRK12406 3 ATIISGDRRRSFDELAQRAARAAGGLAALGVRPGDCVALLMRNDFAFFEAAYAAMRLGAYAVPVNWHFKPEEIAYILEDS 82 (509)
T ss_pred eEEEECCeeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCeEEEecCcccCHHHHHHHHhcc
Confidence 46777889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEEEcCCchhhHHHHHHHhccccCCCCceEEccCCCCC-------CcccccCCCCccHHHHHhhccccccCCCCCCC
Q 046637 111 EAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGEP-------VSTVASSSGNLEYESLLAIGKLREVRRPKDEC 183 (301)
Q Consensus 111 ~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (301)
++++++++......+.+... ....++......+. ............++++..... .......+
T Consensus 83 ~~~~i~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 152 (509)
T PRK12406 83 GARVLIAHADLLHGLASALP-------AGVTVLSVPTPPEIAAAYRISPALLTPPAGAIDWEGWLAQQE---PYDGPPVP 152 (509)
T ss_pred CCcEEEEccchhhhhhhhhh-------cccceeecccccccccccccccccccCCCCccCHHHHhcccC---ccCCCCCC
Confidence 99999998776554332221 11112211111000 000011122345555543221 11234568
Q ss_pred CceEEEeccCCCCCCCeeeechHHH---HHHHHHHHHHhhCCCCCEEEEeccchhhhhhHHHHHHHHhCCeEEeeCCCCH
Q 046637 184 DPIALNYTSGTTSSPKGVICSHRGA---YLNSLAAALFNEMGLMPTYLWCVPMFHCNGWCLTWAVAAQGGTNVCQRTVNA 260 (301)
Q Consensus 184 ~~~~i~~TSGtTG~pK~v~~s~~~l---~~~~~~~~~~~~~~~~~~~l~~~p~~h~~g~~~~~~~l~~g~~~v~~~~~~~ 260 (301)
++++++|||||||.||+|.++|.+. ..........+++..++++++..|++|..+....+.++..|+++++.+.+++
T Consensus 153 ~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 232 (509)
T PRK12406 153 QPQSMIYTSGTTGHPKGVRRAAPTPEQAAAAEQMRALIYGLKPGIRALLTGPLYHSAPNAYGLRAGRLGGVLVLQPRFDP 232 (509)
T ss_pred CceEEEECCCCCCCCceEEEechhHHHHHHHHHhhhhhcCCCCCceEEEEeCCcccchHHHHHHHHhhheEEEEccCCCH
Confidence 9999999999999999999876653 3333344456778899999999999999988777778889999999888899
Q ss_pred HHHHHHHHhcCcceecCChHHHHHHHcCCC
Q 046637 261 KEIFDNITRHKVTHFGGAPTVLNMIANAPP 290 (301)
Q Consensus 261 ~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~ 290 (301)
..+++.++++++|++..+|+++..|++.+.
T Consensus 233 ~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~ 262 (509)
T PRK12406 233 EELLQLIERHRITHMHMVPTMFIRLLKLPE 262 (509)
T ss_pred HHHHHHHHHcCCeEEEccHHHHHHHHhCch
Confidence 999999999999999999999999987654
|
|
| >PRK07787 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-31 Score=239.30 Aligned_cols=224 Identities=23% Similarity=0.206 Sum_probs=189.7
Q ss_pred hhhcCCccEEEECCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHhhhccceeeecCCCCCHHHH
Q 046637 24 AVVYRDRPSVVYGDVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAGAVLCTLNTRHDSAMV 103 (301)
Q Consensus 24 ~~~~~~~~al~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l 103 (301)
.+..++++|+++.++++||+||.++++++|..|+ ++|+|+++++|++++++++|||+++|++++|+++..+.+++
T Consensus 10 ~~~~~~~~a~~~~~~~~Ty~el~~~~~~~a~~L~-----~~~~V~l~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~l 84 (471)
T PRK07787 10 AAAADIADAVRIGGRVLSRSDLAGAATAVAERVA-----GARRVAVLATPTLATVLAVVGALIAGVPVVPVPPDSGVAER 84 (471)
T ss_pred hcccCCceEEEeCCcEEEHHHHHHHHHHHHHHhc-----cCCEEEEECCCCHHHHHHHHHHHhcCcEEeecCCCCChHHH
Confidence 4456889999999999999999999999999996 57999999999999999999999999999999999999999
Q ss_pred HHHHHhcCceEEEEcCCchhhHHHHHHHhccccCCCCceEEccCCCCCCcccccCCCCccHHHHHhhccccccCCCCCCC
Q 046637 104 SVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVASSSGNLEYESLLAIGKLREVRRPKDEC 183 (301)
Q Consensus 104 ~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (301)
.++++.+++++++++.+... . .++.+...... ..+. ......++
T Consensus 85 ~~~l~~~~~~~il~~~~~~~---------~----~~~~~~~~~~~-------------~~~~----------~~~~~~~~ 128 (471)
T PRK07787 85 RHILADSGAQAWLGPAPDDP---------A----GLPHVPVRLHA-------------RSWH----------RYPEPDPD 128 (471)
T ss_pred HHHHHhcCCCEEEecCCccc---------c----cccceeeeccc-------------cccc----------cCCCCCCC
Confidence 99999999999999763110 0 11211110000 0000 01124568
Q ss_pred CceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhhCCCCCEEEEeccchhhhhhHH-HHHHHHhCCeEEeeCCCCHHH
Q 046637 184 DPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPTYLWCVPMFHCNGWCL-TWAVAAQGGTNVCQRTVNAKE 262 (301)
Q Consensus 184 ~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~h~~g~~~-~~~~l~~g~~~v~~~~~~~~~ 262 (301)
++++|+|||||||.||||.++|.++..+.......+++..++++++.+|++|.+|+.. ++.++..|+++++.+.+++..
T Consensus 129 ~~a~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~ 208 (471)
T PRK07787 129 APALIVYTSGTTGPPKGVVLSRRAIAADLDALAEAWQWTADDVLVHGLPLFHVHGLVLGVLGPLRIGNRFVHTGRPTPEA 208 (471)
T ss_pred ceEEEEECCCCCCCCCEEEEeHHHHHHHHHHHHHhcCCCccceeEeccCCeeechhHHHHHHHHhcCCEEEecCCCCHHH
Confidence 9999999999999999999999999998888878888889999999999999999775 788899999999998899999
Q ss_pred HHHHHHhcCcceecCChHHHHHHHcCC
Q 046637 263 IFDNITRHKVTHFGGAPTVLNMIANAP 289 (301)
Q Consensus 263 ~~~~i~~~~~t~~~~~P~~~~~l~~~~ 289 (301)
+++.++ +++|++.++|+++..|++.+
T Consensus 209 ~~~~i~-~~~t~~~~~P~~~~~l~~~~ 234 (471)
T PRK07787 209 YAQALS-EGGTLYFGVPTVWSRIAADP 234 (471)
T ss_pred HHHHHh-hCceEEEcchHHHHHHHhCc
Confidence 999999 99999999999999998754
|
|
| >PRK08276 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-31 Score=239.14 Aligned_cols=246 Identities=28% Similarity=0.324 Sum_probs=194.9
Q ss_pred cEEEECCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHhhhccceeeecCCCCCHHHHHHHHHhc
Q 046637 31 PSVVYGDVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHS 110 (301)
Q Consensus 31 ~al~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~ 110 (301)
.++.+.++.+||+||.+.+.++++.|.+.|+++||+|+++++|++++++++|||+++|++++|+++..+.+++.++++.+
T Consensus 3 ~~~~~~~~~~ty~el~~~v~~~a~~L~~~g~~~~~~V~i~~~~~~~~~~~~la~~~~G~~~~~l~~~~~~~~~~~~~~~~ 82 (502)
T PRK08276 3 VIMAPSGEVVTYGELEARSNRLAHGLRALGLREGDVVAILLENNPEFFEVYWAARRSGLYYTPINWHLTAAEIAYIVDDS 82 (502)
T ss_pred eEecCCCcEEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHHHhcCcEEEecccccCHHHHHHHHhcC
Confidence 45566789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEEEcCCchhhHHHHHHHhccccCCCCceEEccCCCCCCcccccCCCCccHHHHHhhccccccCCCCCCCCceEEEe
Q 046637 111 EAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVASSSGNLEYESLLAIGKLREVRRPKDECDPIALNY 190 (301)
Q Consensus 111 ~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 190 (301)
+++++++++.......+....... ..+.+++.+... .....|++....... ......++.++++|
T Consensus 83 ~~~~ii~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~---------~~~~~~~~~~~~~~~---~~~~~~~~~a~i~~ 147 (502)
T PRK08276 83 GAKVLIVSAALADTAAELAAELPA---GVPLLLVVAGPV---------PGFRSYEEALAAQPD---TPIADETAGADMLY 147 (502)
T ss_pred CCCEEEEccchhhHHHHHhhhccc---cccEEEEeCCCC---------CccccHHHHHhcCCC---CCCCCCCcceEEEE
Confidence 999999998776655544333220 234444432211 122345554432211 11234567899999
Q ss_pred ccCCCCCCCeeeechHHHHHHHH------HHHHHhhCCCCCEEEEeccchhhhhhHHHHHHHHhCCeEEeeCCCCHHHHH
Q 046637 191 TSGTTSSPKGVICSHRGAYLNSL------AAALFNEMGLMPTYLWCVPMFHCNGWCLTWAVAAQGGTNVCQRTVNAKEIF 264 (301)
Q Consensus 191 TSGtTG~pK~v~~s~~~l~~~~~------~~~~~~~~~~~~~~l~~~p~~h~~g~~~~~~~l~~g~~~v~~~~~~~~~~~ 264 (301)
||||||.||+|.++|.++..... ..........++++++..|++|.+++...+.++..|+++++.+.+++..++
T Consensus 148 TSGtTG~PK~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 227 (502)
T PRK08276 148 SSGTTGRPKGIKRPLPGLDPDEAPGMMLALLGFGMYGGPDSVYLSPAPLYHTAPLRFGMSALALGGTVVVMEKFDAEEAL 227 (502)
T ss_pred CCCCCCCCceEEEccCCcchhhhhHHhhhhhhhcccCCCCCEEEEcCcHHHHHHHHHHHHHHhccceEEEcCCCCHHHHH
Confidence 99999999999999877543221 111122234678999999999999988778899999999999889999999
Q ss_pred HHHHhcCcceecCChHHHHHHHcCCCC
Q 046637 265 DNITRHKVTHFGGAPTVLNMIANAPPV 291 (301)
Q Consensus 265 ~~i~~~~~t~~~~~P~~~~~l~~~~~~ 291 (301)
+.++++++|++.++|+++..+++.+..
T Consensus 228 ~~i~~~~~t~~~~~P~~~~~l~~~~~~ 254 (502)
T PRK08276 228 ALIERYRVTHSQLVPTMFVRMLKLPEE 254 (502)
T ss_pred HHHHHhCCeEEEehHHHHHHHHhCccc
Confidence 999999999999999999999987653
|
|
| >PRK07768 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-31 Score=242.02 Aligned_cols=245 Identities=25% Similarity=0.221 Sum_probs=196.3
Q ss_pred CHHHHHHHHhhhcCCccEEEECC--eeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHhhhccceee
Q 046637 15 TPISFLERSAVVYRDRPSVVYGD--VQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAGAVLC 92 (301)
Q Consensus 15 ~~~~~l~~~~~~~~~~~al~~~~--~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v 92 (301)
++.+.+...++.+|+.+++...+ +.+||+||.++++++|..|.+.|+++||+|+++++|+++++++++||+++|++++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ty~el~~~v~~~a~~L~~~g~~~gd~V~l~~~~~~~~~~~~la~~~~g~v~~ 82 (545)
T PRK07768 3 RFTEKMYANARTSPRGMVTGEPDAPVRHTWGEVHERARRIAGGLAAAGVGPGDAVAVLAGAPVEIAPTAQGLWMRGASLT 82 (545)
T ss_pred hHHHHHHHHhhCCCcceEEecCCCceEecHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHHHHHcCcccc
Confidence 57788889999999999996644 6899999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCHHHH-------HHHHHhcCceEEEEcCCchhhHHHHHHHhccccCCCCceEEccCCCCCCcccccCCCCccHH
Q 046637 93 TLNTRHDSAMV-------SVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVASSSGNLEYE 165 (301)
Q Consensus 93 ~l~~~~~~~~l-------~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 165 (301)
++++..+.+++ .++++.++++.+++++........... ....+ ..++
T Consensus 83 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-------~~~~~-------------------~~~~ 136 (545)
T PRK07768 83 MLHQPTPRTDLAVWAEDTLRVIGMIGAKAVVVGEPFLAAAPVLEE-------KGIRV-------------------LTVA 136 (545)
T ss_pred ccCCCCCcchhHHHHHHHHHHHHhCCCCEEEecchhhhhhhhhcc-------cCCce-------------------eehh
Confidence 99988776544 456788899999998765433322110 00111 2223
Q ss_pred HHHhhccccccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhhCCCC-CEEEEeccchhhhhhHH-HH
Q 046637 166 SLLAIGKLREVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLM-PTYLWCVPMFHCNGWCL-TW 243 (301)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~-~~~l~~~p~~h~~g~~~-~~ 243 (301)
++...... ......++++++|+|||||||.||||+++|.+++.+.......+++..+ |++++.+|++|.+|+.. ++
T Consensus 137 ~l~~~~~~--~~~~~~~~~~a~i~~TSGtTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~ 214 (545)
T PRK07768 137 DLLAADPI--DPVETGEDDLALMQLTSGSTGSPKAVQITHGNLYANAEAMFVAAEFDVETDVMVSWLPLFHDMGMVGFLT 214 (545)
T ss_pred hhcccCCC--CcCCCCCCCEEEEEeCCCCCCCCceEEEcHHHHHHHHHHHHHhcCCCCCCceeEEeCCCccchHHHHHHH
Confidence 33221111 1123567899999999999999999999999999888877777787776 89999999999999875 56
Q ss_pred HHHHhCCeEEeeCC----CCHHHHHHHHHhcCcceecCChHHHHHHHc
Q 046637 244 AVAAQGGTNVCQRT----VNAKEIFDNITRHKVTHFGGAPTVLNMIAN 287 (301)
Q Consensus 244 ~~l~~g~~~v~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~ 287 (301)
.++..|+++++.+. .++..+++.++++++|++..+|.++..+.+
T Consensus 215 ~~l~~g~~~v~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~ 262 (545)
T PRK07768 215 VPMYFGAELVKVTPMDFLRDPLLWAELISKYRGTMTAAPNFAYALLAR 262 (545)
T ss_pred HHHHCCceEEEeCHHHHHHhHHHHHHHHHHhCCEEEECchHHHHHHHH
Confidence 67999999988763 378889999999999999888888776654
|
|
| >TIGR03089 conserved hypothetical protein TIGR03089 | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-31 Score=212.10 Aligned_cols=216 Identities=14% Similarity=0.080 Sum_probs=163.9
Q ss_pred HHHHhhhcCCccEEEEC-C-----eeeeHHHHHHHHHHHHHHHHh-cCCCCCCEEEEEcCCCHHHHHHHHHhhhccceee
Q 046637 20 LERSAVVYRDRPSVVYG-D-----VQYTWKETHQRCVKLASGLAH-LGISPGDVVAALAPNVPAMYELHFGVPMAGAVLC 92 (301)
Q Consensus 20 l~~~~~~~~~~~al~~~-~-----~~~Ty~el~~~~~~la~~L~~-~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v 92 (301)
+...++++|+++|+++. + .++||+|+.+++.++|..|++ .|+++||+|+++++|+++++++++||+++|++++
T Consensus 2 ~~~~~~~~p~~~al~~~~~~~~~~~~~Ty~~l~~~~~~~a~~L~~~~Gv~~GdrV~i~~~n~~~~~~~~~a~~~~G~v~v 81 (227)
T TIGR03089 2 LSPLLAADPASPRLTFYDDATGERVELSAATLANWVAKTANLLQDELDAEPGSRVALDLPAHWQTAVWLLAAWSTGVEVV 81 (227)
T ss_pred hhhhhhhCCCCcEEEEEcCCCCeeEEEEHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEE
Confidence 46678889999999852 2 369999999999999999998 7999999999999999999999999999999999
Q ss_pred ecCCCCCHHHHHHHHHhcCceEEEEcCCchhhHHHHHHHhccccCCCCceEEccCCCCCC-cccccCCCCccHHHHHhhc
Q 046637 93 TLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGEPV-STVASSSGNLEYESLLAIG 171 (301)
Q Consensus 93 ~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 171 (301)
|++ .+++++++++.+....... . +.++.+....... .......+...|.+.....
T Consensus 82 p~n-------------~s~a~~~v~~~~~~~~~~~----------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (227)
T TIGR03089 82 LAG-------------DPDADVVVTGPDRLAAAAG----------S-GEVVALSLDPLGRRVAGELPPGVIDFAPEVRVH 137 (227)
T ss_pred eCC-------------CCCCCEEEeCcchhhhccc----------C-CceEEEeccccccCCCCCCCCcccchhhhhhcc
Confidence 994 7899999999877655320 1 2233322110000 0000112334566555432
Q ss_pred ccc-ccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhhCCCCCEEEEeccchhhhhhHH-HHHHHHhC
Q 046637 172 KLR-EVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPTYLWCVPMFHCNGWCL-TWAVAAQG 249 (301)
Q Consensus 172 ~~~-~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~h~~g~~~-~~~~l~~g 249 (301)
... .......++|++.|+||||+ +|.+++.+. ...++.++|+++ .+|++|++|+.. ++.++..|
T Consensus 138 ~~~~~~~~~~~~~D~a~l~yTsg~---------~~~~~~~~~----~~~~l~~~D~~l-~~Pl~H~~gl~~~~~~~l~~G 203 (227)
T TIGR03089 138 GDQFAPYEPPDATAPALVAGGGEW---------TGAELVAAA----RAAGLPPGDRVL-VLAWTDLEDFLATLLAPLAAG 203 (227)
T ss_pred CCCCCCCCCCCCCcceeeeccccc---------cHHHHHHHH----hhcCCCCCCeEE-ecCCCchHHHHHHHHHHhccC
Confidence 222 11113466899999999985 666665544 456788999999 999999999874 78899999
Q ss_pred CeEEeeCCCCHHHHHHHHHhcCcc
Q 046637 250 GTNVCQRTVNAKEIFDNITRHKVT 273 (301)
Q Consensus 250 ~~~v~~~~~~~~~~~~~i~~~~~t 273 (301)
+++|+.++|++..+++.|+++|||
T Consensus 204 ~t~v~~~rFd~~~~l~~i~~~~vT 227 (227)
T TIGR03089 204 GSLVLVTHPDPARLDQIAETERVT 227 (227)
T ss_pred ceEEEecCCCHHHHHHHHHhhcCC
Confidence 999999999999999999999997
|
This protein family is found, so far, only in the Actinobacteria (Streptomyces, Mycobacterium, Corynebacterium, Nocardia, Propionibacterium, etc.) and never more than one to a genome. Members show twilight-level sequence similarity to family of AMP-binding enzymes described by Pfam model pfam00501. |
| >TIGR01923 menE O-succinylbenzoate-CoA ligase | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.4e-30 Score=232.76 Aligned_cols=216 Identities=23% Similarity=0.318 Sum_probs=182.0
Q ss_pred eHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHhhhccceeeecCCCCCHHHHHHHHHhcCceEEEEcCC
Q 046637 41 TWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQ 120 (301)
Q Consensus 41 Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~ 120 (301)
||+||.+.++++|..|.+.|+++||+|+++++|+++++++++||+++|++++++++..+.+++..++++++++++++++.
T Consensus 1 Ty~~l~~~~~~~a~~l~~~g~~~gd~v~i~~~~~~~~~~~~la~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 80 (436)
T TIGR01923 1 TWQDLDCEAAHLAKALKAQGIRSGSRVALVGQNSIEMVLLLHACLLLGAEIAMLNTRLTENERTNQLEDLDVQLLLTDSL 80 (436)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHhcCcEEEecCcCCCHHHHHHHHHhcCCCEEEEcCc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999875
Q ss_pred chhhHHHHHHHhccccCCCCceEEccCCCCCCcccccCCCCccHHHHHhhcccc-ccCCCCCCCCceEEEeccCCCCCCC
Q 046637 121 LLPIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVASSSGNLEYESLLAIGKLR-EVRRPKDECDPIALNYTSGTTSSPK 199 (301)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~TSGtTG~pK 199 (301)
..... .. . ..+.++....... ........+++++++|||||||.||
T Consensus 81 ~~~~~-------------~~-~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK 127 (436)
T TIGR01923 81 LEEKD-------------FQ-A-------------------DSLDRIEAAGRYETSLSASFNMDQIATLMFTSGTTGKPK 127 (436)
T ss_pred ccccc-------------ee-e-------------------cchHhhhhcccccccccccCCcCceEEEEeCCCCCCCCc
Confidence 32110 00 0 0000000000000 1112355678999999999999999
Q ss_pred eeeechHHHHHHHHHHHHHhhCCCCCEEEEeccchhhhhhHHHHHHHHhCCeEEeeCCCCHHHHHHHHHhcCcceecCCh
Q 046637 200 GVICSHRGAYLNSLAAALFNEMGLMPTYLWCVPMFHCNGWCLTWAVAAQGGTNVCQRTVNAKEIFDNITRHKVTHFGGAP 279 (301)
Q Consensus 200 ~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~h~~g~~~~~~~l~~g~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P 279 (301)
+|.++|.++...+......+++.++|++++..|++|.+|+...+.++..|+++++.+.++ .+++.++++++|++.++|
T Consensus 128 ~v~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~--~~~~~l~~~~~t~~~~~P 205 (436)
T TIGR01923 128 AVPHTFRNHYASAVGSKENLGFTEDDNWLLSLPLYHISGLSILFRWLIEGATLRIVDKFN--QLLEMIANERVTHISLVP 205 (436)
T ss_pred EEEEehHHHHHHHHHHHhhcCCCCCceEEEccCcHhHHHHHHHHHHHhcCceEEecchHH--HHHHHHHHhCCeEEEeHH
Confidence 999999999998888888889999999999999999999888889999999999987653 999999999999999999
Q ss_pred HHHHHHHcCCCC
Q 046637 280 TVLNMIANAPPV 291 (301)
Q Consensus 280 ~~~~~l~~~~~~ 291 (301)
+++..+++....
T Consensus 206 ~~l~~l~~~~~~ 217 (436)
T TIGR01923 206 TQLNRLLDEGGH 217 (436)
T ss_pred HHHHHHHhCcCC
Confidence 999999987543
|
This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate. |
| >PRK07445 O-succinylbenzoic acid--CoA ligase; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-30 Score=232.78 Aligned_cols=205 Identities=13% Similarity=0.038 Sum_probs=168.8
Q ss_pred eeeHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEcCCCHHHHHHHHHhhhccceeeecCCCCCHHHHHHHHHhcCceEEEE
Q 046637 39 QYTWKETHQRCVKLASGLAHLGI-SPGDVVAALAPNVPAMYELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFV 117 (301)
Q Consensus 39 ~~Ty~el~~~~~~la~~L~~~gv-~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~ 117 (301)
-+.|+||.+++.++|..|.+.|+ ++|++|+++.+|+++++++++||+++|++++|++|.++.+++.+++++++++++++
T Consensus 19 ~~~~~el~~~~~~~a~~L~~~g~~~~~~~V~i~~~n~~e~~~~~~A~~~~G~~~vpl~~~~~~~~~~~~~~~~~~~~~i~ 98 (452)
T PRK07445 19 GYNSQRFYQLAQQLYLQLQQLATPRTPPKILLAESDPLQFLAAFLAAVAAGCPVFLANPHWGQQEWQQVLNLVQPDQIWG 98 (452)
T ss_pred ecChHHHHHHHHHHHHHHHHhcCCCCCCeEEEecCCCHHHHHHHHHHHHhCcEEEeeccCCCHHHHHHHHHhcCCCEEEe
Confidence 46799999999999999999988 57999999999999999999999999999999999999999999999999999998
Q ss_pred cCCchhhHHHHHHHhccccCCCCceEEccCCCCCCcccccCCCCccHHHHHhhccccccCCCCCCCCceEEEeccCCCCC
Q 046637 118 DYQLLPIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVASSSGNLEYESLLAIGKLREVRRPKDECDPIALNYTSGTTSS 197 (301)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~ 197 (301)
++..... . ... .. . ......++++++++|||||||.
T Consensus 99 ~~~~~~~--------------~-----~~~--------------~~------~-----~~~~~~~~~~~~i~~TSGTTG~ 134 (452)
T PRK07445 99 LDQLKLS--------------H-----PPP--------------LP------S-----QGILPNLETGWIMIPTGGSSGQ 134 (452)
T ss_pred cCccccc--------------c-----CCC--------------CC------c-----cccCCCCCCcEEEEeCCCCCCC
Confidence 7653210 0 000 00 0 0011356899999999999999
Q ss_pred CCeeeechHHHHHHHHHHHHHhhCCCCCEEEEeccchhhhhhHHHHHHHHhCCeEEeeCCCCHHHHHHHHHhcCcceecC
Q 046637 198 PKGVICSHRGAYLNSLAAALFNEMGLMPTYLWCVPMFHCNGWCLTWAVAAQGGTNVCQRTVNAKEIFDNITRHKVTHFGG 277 (301)
Q Consensus 198 pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~h~~g~~~~~~~l~~g~~~v~~~~~~~~~~~~~i~~~~~t~~~~ 277 (301)
||||++||.++..+.......+.+.+ +++++.+|++|.+|+..++.++..|+++++.+..+.........++++|++.+
T Consensus 135 PKgV~~t~~~l~~~~~~~~~~~~~~~-~~~~~~~Pl~h~~g~~~~~~~l~~G~t~v~~~~~~~~~~~~~~~~~~~t~~~~ 213 (452)
T PRK07445 135 IRFAIHTWETLTASVQGFQRYFQLQQ-VNSFCVLPLYHVSGLMQFMRSFLTGGKLVILPYKRLKSGQELPPNPSDFFLSL 213 (452)
T ss_pred CcEEEechHHHHHHHHHHHHHhcCCC-CceEeccCchhhhhHHHHHHHHHcCCeEEEcChHhccchhhhhhhcCceEEEe
Confidence 99999999999888777766666654 46788999999999988889999999999987433333334445789999999
Q ss_pred ChHHHHHHHcC
Q 046637 278 APTVLNMIANA 288 (301)
Q Consensus 278 ~P~~~~~l~~~ 288 (301)
+|++++.+++.
T Consensus 214 vP~~l~~l~~~ 224 (452)
T PRK07445 214 VPTQLQRLLQL 224 (452)
T ss_pred hHHHHHHHHhh
Confidence 99999999863
|
|
| >TIGR01733 AA-adenyl-dom amino acid adenylation domain | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.5e-30 Score=225.43 Aligned_cols=225 Identities=24% Similarity=0.253 Sum_probs=186.0
Q ss_pred eHHHHHHHHHHHHHHHHh-cCCCCCCEEEEEcCCCHHHHHHHHHhhhccceeeecCCCCCHHHHHHHHHhcCceEEEEcC
Q 046637 41 TWKETHQRCVKLASGLAH-LGISPGDVVAALAPNVPAMYELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDY 119 (301)
Q Consensus 41 Ty~el~~~~~~la~~L~~-~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~ 119 (301)
||+||.+.++++++.|.+ .|+++||+|+++++|+++++++++||++.|++++|+++..+.+++.++++.+++++++++.
T Consensus 1 t~~~l~~~~~~~a~~l~~~~g~~~gd~v~l~~~n~~~~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~l~~~~~~~ii~~~ 80 (408)
T TIGR01733 1 TYRELDERANRLARHLRAAGGVGPGDRVAVLLERSAELVVAILAVLKAGAAYVPLDPAYPAERLAFILEDAGARLLLTDS 80 (408)
T ss_pred CHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEEcCCCCCHHHHHHHHHhcCCCEEEEcC
Confidence 799999999999999998 8999999999999999999999999999999999999999999999999999999999998
Q ss_pred CchhhHHHHHHHhccccCCCCceEEccCCCCCCcccccCCCCccHHHHHhhcccc-ccCCCCCCCCceEEEeccCCCCCC
Q 046637 120 QLLPIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVASSSGNLEYESLLAIGKLR-EVRRPKDECDPIALNYTSGTTSSP 198 (301)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~TSGtTG~p 198 (301)
.....+... ...+...... +.......... ........+++++++|||||||.|
T Consensus 81 ~~~~~~~~~----------~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTtG~p 135 (408)
T TIGR01733 81 ALASRLAGL----------VLPIILVDPL---------------ELAALDDAPAPPPPDAPSGPDDLAYVIYTSGSTGRP 135 (408)
T ss_pred chhhhcccc----------CCceEEechh---------------hhhhcccccccccccCCCCCCCcEEEEEcCCCCCCC
Confidence 765433221 1122222111 00000000000 011114578999999999999999
Q ss_pred CeeeechHHHHHHHHHHHHHhhCCCCCEEEEeccchhhhhhHHHHHHHHhCCeEEeeCCCC---HHHHHHHHHhcCccee
Q 046637 199 KGVICSHRGAYLNSLAAALFNEMGLMPTYLWCVPMFHCNGWCLTWAVAAQGGTNVCQRTVN---AKEIFDNITRHKVTHF 275 (301)
Q Consensus 199 K~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~h~~g~~~~~~~l~~g~~~v~~~~~~---~~~~~~~i~~~~~t~~ 275 (301)
|+|.+||.++..........+.+..++++++..|++|.+++...+.++..|+++++.+... +..+.+.++++++|.+
T Consensus 136 K~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~l 215 (408)
T TIGR01733 136 KGVVVTHRSLVNLLAWLARRYGLDPDDRVLQFASLSFDASVEEIFGTLLAGATLVVPPEDEERDAALLAALIAEHPVTVL 215 (408)
T ss_pred CEEEeccHHHHHHHHHHHHhcCCCCCceEEEecCCccchhHHHHHHHHhCCCEEEEcChhhccCHHHHHHHHHHcCceEE
Confidence 9999999999998888888888889999999999999999888899999999999987543 6899999999999999
Q ss_pred cCChHHHHHHHcCCC
Q 046637 276 GGAPTVLNMIANAPP 290 (301)
Q Consensus 276 ~~~P~~~~~l~~~~~ 290 (301)
.++|.+++.|++...
T Consensus 216 ~~~p~~~~~l~~~~~ 230 (408)
T TIGR01733 216 NLTPSLLALLAAALP 230 (408)
T ss_pred EeCHHHHHHHHHhhh
Confidence 999999999998754
|
This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group. |
| >KOG1175 consensus Acyl-CoA synthetase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.9e-29 Score=222.76 Aligned_cols=269 Identities=21% Similarity=0.256 Sum_probs=210.5
Q ss_pred HHHHHhhh-cCCccEEEECC------eeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHhhhcccee
Q 046637 19 FLERSAVV-YRDRPSVVYGD------VQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAGAVL 91 (301)
Q Consensus 19 ~l~~~~~~-~~~~~al~~~~------~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~ 91 (301)
++.+..+. .+|.+++++.+ ..+||.|+.+++.++|..|...|+++||+|++++|+.++++++++||.++|++.
T Consensus 69 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~t~~el~~~v~~~a~~l~~~g~~kGD~V~~~mPm~~e~~ia~lA~~r~Gai~ 148 (626)
T KOG1175|consen 69 CLDRHIKEKGGDKVAIIFEGNEGGDTEVWTYKELLDQVVRLANVLRKCGLKKGDTVAIYMPMIPEAVIAMLACARIGAIH 148 (626)
T ss_pred hhhhhhhhcCCCCcEEEEEecCCCceEEEEHHHHHHHHHHHHHHHHhcCCCCCcEEEEeccCChHHHHHHHHHhhcCeEE
Confidence 34444333 47888888743 458999999999999999998899999999999999999999999999999999
Q ss_pred eecCCCCCHHHHHHHHHhcCceEEEEcCCchhhHH---------HHHHHhccccCCCCceEEccCCCCCCcccccCCCCc
Q 046637 92 CTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQ---------GAFEILSKTSAKLPLLVLVPECGEPVSTVASSSGNL 162 (301)
Q Consensus 92 v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~---------~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 162 (301)
+++...++++++...++.++++++++.+......+ +.....+.........+.+... ....
T Consensus 149 ~~v~~~fs~~~l~~Rl~~~~~k~i~t~d~~~~~~k~i~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----------~~d~ 218 (626)
T KOG1175|consen 149 SSVFAGFSAKELLDRLQDSKAKVIITQDVVARGGKSINLKCIVLEALLLVSDKSRPVWLDLIVSRR----------NRDL 218 (626)
T ss_pred EEeeccCCHHHHHHHHHhcCCCEEEEEeeeccCCCccchhhhHHHHhhcccccccccceeeEEecc----------cccc
Confidence 99999999999999999999999999865443221 1111111110011111111111 1125
Q ss_pred cHHHHHhhccccccCCCCCCCCceEEEeccCCCCCCCeeeechHHH-HHHHHHHHHHhhCCCCCEEEEeccchhhhhhHH
Q 046637 163 EYESLLAIGKLREVRRPKDECDPIALNYTSGTTSSPKGVICSHRGA-YLNSLAAALFNEMGLMPTYLWCVPMFHCNGWCL 241 (301)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l-~~~~~~~~~~~~~~~~~~~l~~~p~~h~~g~~~ 241 (301)
.+++++............+.+++.+|+|||||||.||++.+++..- +..+......+.+.++|+..+...+-++.|.+.
T Consensus 219 ~~~~~~~~a~~~~~~~~~~~edpl~IlfTSGtTg~PK~v~ht~~g~ll~~~~~~~~~~d~q~~dv~~~~~d~GWi~g~~~ 298 (626)
T KOG1175|consen 219 FWSLELKKASPEHPCVPVKAEDPLFILFTSGTTGKPKGVIHTTGGYLLGAALTSRYHFDLQPSDVLWCASDLGWITGHSY 298 (626)
T ss_pred cHHHHhhhcCCCCCceecCccCceEEEecCCCCCCCCceeeccCcchHHHhhhcceeccCCCcceEEEecccCeeeccch
Confidence 6677766666665566788999999999999999999999998774 445555666778999999999999999988775
Q ss_pred -HHHHHHhCCeEEeeC--CCCHHHHHHHHHhcCcceecCChHHHHHHHcCCCCcccccc
Q 046637 242 -TWAVAAQGGTNVCQR--TVNAKEIFDNITRHKVTHFGGAPTVLNMIANAPPVFENRFR 297 (301)
Q Consensus 242 -~~~~l~~g~~~v~~~--~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~ 297 (301)
.+.+|++|+++++.+ .+++..+++.+.++++|++++.|+.++.|.+.......+.+
T Consensus 299 ~~~gpl~~Ga~~vl~~g~p~~~~~~~~~v~k~~it~l~t~pt~~r~l~~~~~~~~~~~~ 357 (626)
T KOG1175|consen 299 VLYGPLLNGATVVLYEGPPFDPGRIWKILDKYKVTVLYTAPTAYRLLRRLGQEDVTSYS 357 (626)
T ss_pred hhhhhhhcCcEEEEEcCCCCChhhhhhhHhhcceEEEEeccHHHHHHHHhccccccccc
Confidence 678999999999986 45999999999999999999999999988877665544443
|
|
| >PLN03051 acyl-activating enzyme; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.2e-28 Score=220.32 Aligned_cols=213 Identities=17% Similarity=0.189 Sum_probs=158.3
Q ss_pred cCCCHHHHHHHHHhhhccceeeecCCCCCHHHHHHHHHhcCceEEEEcCCch------hhHHHHHHHhccccCCCCceEE
Q 046637 71 APNVPAMYELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLL------PIAQGAFEILSKTSAKLPLLVL 144 (301)
Q Consensus 71 ~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~------~~~~~~~~~~~~~~~~~~~i~~ 144 (301)
++|++++++++|||+++|++++|+++.++.+++.++++.++++++|+++... ..+.+..... ..+.+++
T Consensus 1 ~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~el~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~-----~~~~i~~ 75 (499)
T PLN03051 1 MPMTVDAVIIYLAIVLAGCVVVSVADSFSAKEIATRLDISGAKGVFTQDVVLRGGRALPLYSKVVEAA-----PAKAIVL 75 (499)
T ss_pred CCCcHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHhcCceEEEecCceeeCCeeecchhhhhhcc-----cceEEEE
Confidence 5899999999999999999999999999999999999999999999986531 2222221111 1222222
Q ss_pred ccCCCCCCcccccCCCCccHHHHHhhccc------cc-cCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHH
Q 046637 145 VPECGEPVSTVASSSGNLEYESLLAIGKL------RE-VRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAAL 217 (301)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~-~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~ 217 (301)
.... ... ......+...|.++...... .. ......++++++|+|||||||.||||++||.+++.+......
T Consensus 76 ~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~sh~~~~~~~~~~~~ 153 (499)
T PLN03051 76 PAAG-EPV-AVPLREQDLSWCDFLGVAAAQGSVGGNEYSPVYAPVESVTNILFSSGTTGEPKAIPWTHLSPLRCASDGWA 153 (499)
T ss_pred eccC-ccc-CCccccCcccHHHHHhhhccccccccccCCcccCCccceEEEEeCCCCCCCCceEEEccchHHHHHHHHHH
Confidence 2111 000 00000122346655422110 01 111235689999999999999999999999998876665555
Q ss_pred HhhCCCCCEEEEeccchhhhhhHHHHHHHHhCCeEEeeC-CCCHHHHHHHHHhcCcceecCChHHHHHHHcCCC
Q 046637 218 FNEMGLMPTYLWCVPMFHCNGWCLTWAVAAQGGTNVCQR-TVNAKEIFDNITRHKVTHFGGAPTVLNMIANAPP 290 (301)
Q Consensus 218 ~~~~~~~~~~l~~~p~~h~~g~~~~~~~l~~g~~~v~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~ 290 (301)
.+++..+|++++..|++|.+|+..++.++..|+++++.+ .+++..+++.|+++++|++.++|++++.|++.+.
T Consensus 154 ~~~~~~~d~~l~~~pl~h~~g~~~~~~~l~~G~t~v~~~~~~~~~~~~~~i~~~~vt~~~~vP~~~~~l~~~~~ 227 (499)
T PLN03051 154 HMDIQPGDVVCWPTNLGWMMGPWLLYSAFLNGATLALYGGAPLGRGFGKFVQDAGVTVLGLVPSIVKAWRHTGA 227 (499)
T ss_pred hcCCCCCCEEEEccCcceeeehHHHHHHHHcCCEEEecCCCCCcHHHHHHHHHhCCcEEEeCHHHHHHHHhcCc
Confidence 667888999999999999999877788899999999987 4789999999999999999999999999987653
|
|
| >COG1020 EntF Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.3e-24 Score=201.81 Aligned_cols=252 Identities=22% Similarity=0.206 Sum_probs=208.4
Q ss_pred cCCCCC-CCCHHHHHHHHhhhcCCccEEEECCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHhh
Q 046637 7 CSANYV-PLTPISFLERSAVVYRDRPSVVYGDVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVP 85 (301)
Q Consensus 7 ~~~~~~-~~~~~~~l~~~~~~~~~~~al~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~ 85 (301)
...+.+ ..++.+.|...+...|++.++++.+..+||+|+..+++++|+.|.+.|+++++.|+++.+.+++++++++|++
T Consensus 219 ~~~~~~~~~~i~~~f~~~a~~~p~~~a~~~~~~~lty~el~~~a~~la~~l~~~g~~~~~~V~i~~~rs~~~i~~~l~il 298 (642)
T COG1020 219 LAAPIPLRLTIHLLFEEQAATTPDAVALVRGGQQLTYAELDARANRLARLLISLGVGPGETVAILADRSLELVVALLAVL 298 (642)
T ss_pred cccCCCccchHHHHHHHHHHhCCCceeEecCCCcccHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCCHHHHHHHHHHH
Confidence 333433 4679999999999999999999999999999999999999999999999999999999988999999999999
Q ss_pred hccceeeecCCCCCHHHHHHHHHhcCceEEEEcCCchhhHHHHHHHhccccCCCCceEEccCCCCCCcccccCCCCccHH
Q 046637 86 MAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVASSSGNLEYE 165 (301)
Q Consensus 86 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 165 (301)
+.|+.++|++|..+.+++..++++.+++.+++......... .++. +.++.... .
T Consensus 299 kaG~~yvP~d~~~P~~r~~~~l~~~~~~~~~~~~~~~~~~~-----------~~~~-~~~~~~~~--------------~ 352 (642)
T COG1020 299 KAGAAYVPLDPLYPAERLAYILEDSRPTLLLTQAHLRVDDV-----------GLPG-LALDDALS--------------E 352 (642)
T ss_pred hcCCeEecCCCCChHHHHHHHHhhcCccEEEeccccccccc-----------cCCc-cccccccc--------------c
Confidence 99999999999999999999999999999999833221100 0111 11111100 0
Q ss_pred HHHhhccccccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhhCCCCCEEEEeccchhhhhhHHHHHH
Q 046637 166 SLLAIGKLREVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPTYLWCVPMFHCNGWCLTWAV 245 (301)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~h~~g~~~~~~~ 245 (301)
.....+......+++.++++|||||||.||||+.+|.++..........+....+|+++...++.+......++.+
T Consensus 353 ----~~~~~~~~~~~~~~~~ayiiytsgstg~Pkgv~~~h~~~~~~~~~~~~~~~~~~~d~~l~~~s~~fD~~~~~~f~~ 428 (642)
T COG1020 353 ----IPDTDPIPQALLGDALAYIIYTSGSTGQPKGVRIEHRALANLLNDAGARFGLDADDRVLALASLSFDASVFEIFGA 428 (642)
T ss_pred ----CCccCcccccCCCCCeEEEEEccCCCCCCCCceecCHHHHHHHHHHHHhcCCCcccEEeecCCcccchhHHHHHHH
Confidence 0000011123456899999999999999999999999999877777777888999999999999777787788999
Q ss_pred HHhCCeEEeeC---CCCHHHHHHHHHhcCcceecCChHHHHHHHcC
Q 046637 246 AAQGGTNVCQR---TVNAKEIFDNITRHKVTHFGGAPTVLNMIANA 288 (301)
Q Consensus 246 l~~g~~~v~~~---~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~ 288 (301)
+..|+++++.+ ..++..+.+.+.++++|++..+|.++..++..
T Consensus 429 l~~G~~l~~~~~~~~~~~~~l~~~~~~~~vt~~~~~p~~~~~~~~~ 474 (642)
T COG1020 429 LLEGARLVLAPALLQVDPAALLELLEAQGITVLLLVPLLLRLLLLA 474 (642)
T ss_pred HhCCCEEEecCccccCCHHHHHHHHHHcCCEEEEecHHHHHHHHhc
Confidence 99999999986 36899999999999999999999999999976
|
|
| >KOG3628 consensus Predicted AMP-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=7.4e-21 Score=174.14 Aligned_cols=274 Identities=16% Similarity=0.165 Sum_probs=218.7
Q ss_pred CCHHHHHHHHhhhcCCccEEEECC------eeeeHHHHHHHHHHHHHHHHhc-CCCCCCEEEEEcCCCHHHHHHHHHhhh
Q 046637 14 LTPISFLERSAVVYRDRPSVVYGD------VQYTWKETHQRCVKLASGLAHL-GISPGDVVAALAPNVPAMYELHFGVPM 86 (301)
Q Consensus 14 ~~~~~~l~~~~~~~~~~~al~~~~------~~~Ty~el~~~~~~la~~L~~~-gv~~g~~V~i~~~n~~~~~~~~lA~~~ 86 (301)
.++.|+|+..++.+||.+|+...+ .++||++|..++++++..|+.. -+++||.|+++.++++|++++++||+.
T Consensus 770 ~~ile~Lq~R~a~tp~~~a~~~~n~~~~~~~~~Tw~~f~krva~i~~~l~~k~~lk~Gd~V~Lmy~~sie~vaa~~~Cly 849 (1363)
T KOG3628|consen 770 LTILEILQWRAAKTPDHIAFTTLNARGATKKTLTWAQFHKRVARIAEYLQDKGHLKAGDHVVLMYPPSIEFVAAIYACLY 849 (1363)
T ss_pred HHHHHHHHHHhhcCCCceEEEEeccCCcccceeEHHHHHHHHHHHHHHHHhcccCCCCCeEEEEcCChHHHHHHHHHHHh
Confidence 678899999999999999999843 6899999999999999999977 589999999999999999999999999
Q ss_pred ccceeeecCCCC------CHHHHHHHHHhcCceEEEEcCCchhhHHHHHHHhccccCCCCceEEccCCCCCCcccccCCC
Q 046637 87 AGAVLCTLNTRH------DSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVASSSG 160 (301)
Q Consensus 87 ~G~~~v~l~~~~------~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 160 (301)
+|.+++|+.|.- ..+.+..+++.++++.|+++.+....++..-.........++.++..++..+
T Consensus 850 ~GliPIpv~p~~~s~l~~~l~~~~~ii~~~kv~ailv~~~v~~lLrsr~~s~~~~~s~~p~i~~~~~~~~---------- 919 (1363)
T KOG3628|consen 850 LGLIPIPVPPPHASNLIEDLPTFRMIIKVYKVAAILVDQKVLKLLRSREASAHVDQSAIPLILVLPKLPE---------- 919 (1363)
T ss_pred cCeeeeccCCccHHhhhhhhHHHHHHHHHhhhheEEecHHHHHHHhhhhHHHHhhhhcchhhhcccccch----------
Confidence 999999998864 3467889999999999999987665544322222211114566666665432
Q ss_pred CccHHHHHhh---ccccccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhhCCCCCEEEEeccchhhh
Q 046637 161 NLEYESLLAI---GKLREVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPTYLWCVPMFHCN 237 (301)
Q Consensus 161 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~h~~ 237 (301)
++....+. ......+.....+.+|++-+.--++|.--++.+||.++++.+......+.+.+..-++.+.+.+-+.
T Consensus 920 --t~~k~~~~~~k~~~~~~~g~~~k~~~a~v~~~~~~dg~l~~~~msHsslla~Ck~iKe~~~l~~~rpl~~~~~~~sGl 997 (1363)
T KOG3628|consen 920 --TIRKRKKNIKKLNTPTPPGLNNKETPALVWFNVSTDGMLIGVKMSHSSLLAFCKIIKETCQLYKSRPLLGCSSPYSGL 997 (1363)
T ss_pred --hhhhhhhhhhccCCCCCccccCCCceEEEEEEecCCcceeeeeccHHHHHHHHHHHHHHHccccCCceEEEecCccch
Confidence 11111111 1111222235567889999988899999999999999999999999999999988888888888888
Q ss_pred hhH-HHHHHHHhCCeEEeeC----CCCHHHHHHHHHhcCcceecCChHHHHHHHcCCCCccccccCC
Q 046637 238 GWC-LTWAVAAQGGTNVCQR----TVNAKEIFDNITRHKVTHFGGAPTVLNMIANAPPVFENRFRGR 299 (301)
Q Consensus 238 g~~-~~~~~l~~g~~~v~~~----~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~~ 299 (301)
|+. +++..++.|.+.++.+ .-+|..|+..|+++|+.-++.+=..+....+.......+++.+
T Consensus 998 gf~~wcLlgVysGh~T~Li~p~~l~nnpsLll~~i~~~kvkDt~~~~~tln~c~~~l~t~~enl~~~ 1064 (1363)
T KOG3628|consen 998 GFNHWCLLGVYSGHPTLLISPMDLENNPSLLLQIISQYKVKDTYPTYSTLNLCQKGLETSVENLSKR 1064 (1363)
T ss_pred hHHHHHHHHHHcCCceeecCHHHhhcCHHHHHHHHhcccccccchhHHHHHHHHhccccccchhhhh
Confidence 877 4788899999888776 3589999999999999999999999999988777666666543
|
|
| >TIGR02372 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactive yellow protein activation family | Back alignment and domain information |
|---|
Probab=99.66 E-value=7.5e-16 Score=134.73 Aligned_cols=105 Identities=20% Similarity=0.175 Sum_probs=90.4
Q ss_pred CCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhhCCC--CCEEEEeccchhhhhhHH-HHHHHHhCCeEEeeCCCC
Q 046637 183 CDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGL--MPTYLWCVPMFHCNGWCL-TWAVAAQGGTNVCQRTVN 259 (301)
Q Consensus 183 ~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~--~~~~l~~~p~~h~~g~~~-~~~~l~~g~~~v~~~~~~ 259 (301)
+..++++|||||||.||||++||.++..++......+++.. .+++++.+|++|.+|+.+ ++.++..|+++++.+.++
T Consensus 95 ~~~~~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~dr~l~~~Pl~h~~g~~~~~l~~l~~G~~vv~~~~~~ 174 (386)
T TIGR02372 95 PTARFTFATSGSTGTPKPVTHSWAALLSEAQAIAKILGERPPPVRRVISCVPAHHLYGFLFSCLLPSRRGLEAKQLAAAP 174 (386)
T ss_pred CCceEEEECCCCCCCCceeEeeHHHHHHHHHHHHHHhCcCCCCCCeEEEeCCcHHHHHHHHHHHHHHHCCCeEEecCCCC
Confidence 55789999999999999999999999988877777776643 368999999999999764 677888999999988899
Q ss_pred HHHHHHHHHhcCcceecCChHHHHHHHcCC
Q 046637 260 AKEIFDNITRHKVTHFGGAPTVLNMIANAP 289 (301)
Q Consensus 260 ~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~ 289 (301)
+..+++.++.+ |+++++|++++.|.+.+
T Consensus 175 ~~~~l~~i~~~--t~~~~~P~~l~~l~~~~ 202 (386)
T TIGR02372 175 ASGIMRHARPG--DLIVGTPFIWEQLADLD 202 (386)
T ss_pred hHHHHHhhccC--CEEEECcHHHHHHHhhC
Confidence 99999888754 89999999999998753
|
Ectothiorhodospira halophila. This enzyme is designated 6.2.1.12 and therefore joins a number of plant enzymes linked to lignin biosynthesis and given similar names. |
| >PRK07824 O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.4e-14 Score=124.92 Aligned_cols=109 Identities=18% Similarity=0.157 Sum_probs=91.9
Q ss_pred CCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhhCCCCCEEEEeccchhhhhhHHHHHHHHhCCeEEee---C
Q 046637 180 KDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPTYLWCVPMFHCNGWCLTWAVAAQGGTNVCQ---R 256 (301)
Q Consensus 180 ~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~h~~g~~~~~~~l~~g~~~v~~---~ 256 (301)
..++++++++|||||||.||||+++|.++.......... +...++++..+|++|.+|+...+.++..|++.++. .
T Consensus 32 ~~~~d~a~il~TSGTTG~PKgv~~s~~~l~~~~~~~~~~--~~~~~~~~~~~p~~~~~g~~~~~~~l~~g~~~v~~~~~~ 109 (358)
T PRK07824 32 PIDDDVALVVATSGTTGTPKGAMLTAAALTASADATHDR--LGGPGQWLLALPAHHIAGLQVLVRSVIAGSEPVELDVSA 109 (358)
T ss_pred CCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHhc--cCCCCeEEEECChHHHHHHHHHHHHHHcCCeEEecCcCC
Confidence 456899999999999999999999999998877665443 34567889999999999988888899999998873 4
Q ss_pred CCCHHHHHHHHHhcC--cceecCChHHHHHHHcCCC
Q 046637 257 TVNAKEIFDNITRHK--VTHFGGAPTVLNMIANAPP 290 (301)
Q Consensus 257 ~~~~~~~~~~i~~~~--~t~~~~~P~~~~~l~~~~~ 290 (301)
.+++..+++.+++++ .++...+|..+..++..+.
T Consensus 110 ~~~~~~~~~~i~~~~~~~~~~~~~p~~l~~~~~~~~ 145 (358)
T PRK07824 110 GFDPTALPRAVAELGGGRRYTSLVPMQLAKALDDPA 145 (358)
T ss_pred CcCHHHHHHHHHHhCCCceEEEecHHHHHHHHhCcc
Confidence 689999999999998 5677789999888877654
|
|
| >KOG1178 consensus Non-ribosomal peptide synthetase/alpha-aminoadipate reductase and related enzymes [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.1e-13 Score=130.53 Aligned_cols=255 Identities=15% Similarity=0.067 Sum_probs=168.7
Q ss_pred CHHHHHHHHhhhcCCccEEEECC--------eeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHhhh
Q 046637 15 TPISFLERSAVVYRDRPSVVYGD--------VQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPM 86 (301)
Q Consensus 15 ~~~~~l~~~~~~~~~~~al~~~~--------~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~ 86 (301)
.+.+.+.+.+.++|.+++..+.. ..+||++.....+.+++.|...|..+|+.|++++..+.++++..++.++
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~i~~~t~r~~~~~~n~~~q~l~~~~~~~~~~v~i~~~~~~d~~v~v~~~~~ 116 (1032)
T KOG1178|consen 37 TLEDSFRRELAEAPENTGHVIIPTASESGIIDSFTYRLIRLLSNIIAQFLVSLGSLRGTTVAIYMLPSVDLVVSVFAVLA 116 (1032)
T ss_pred chhhHHHHHHhhcccCCCceEeecccccccccchhhhhhhcccchhHHHhhhcccccCceEEEeccCcCCeeeeeeehhh
Confidence 44557888899999998887621 5899999999999999999999999999999999999999999999999
Q ss_pred ccceeeecCCCCC----HHHHHHHHHhcCceEEEEcCCchhhHHHHHHHhccccCCCCceEEccCCCCCCcccccCCCCc
Q 046637 87 AGAVLCTLNTRHD----SAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVASSSGNL 162 (301)
Q Consensus 87 ~G~~~v~l~~~~~----~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 162 (301)
.|..+++++|.++ .+++..+.... .-........+.-......+ ..++.-+ + .+..
T Consensus 117 ~g~~~~~idp~~~~~e~~~~~~~ia~~~----~s~~~~i~~~l~i~~~~~~~---~~~~~sv-~------------~~~~ 176 (1032)
T KOG1178|consen 117 AGLTFLPIDPSWPNSELAGYLMRIAHFL----TSVELEIVRRLNIIDILLNS---LFPKLSV-E------------TIAD 176 (1032)
T ss_pred cceEEEEecCCCcccccchHHHhhhhhh----eeccceehhhhhhHHHHhhc---cccccch-h------------hccc
Confidence 9999999999999 23222222111 11101111110000000000 0000000 0 0001
Q ss_pred cHHHHHhhccccccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhhCCCCCEEEEecc-c-hhhhhhH
Q 046637 163 EYESLLAIGKLREVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPTYLWCVP-M-FHCNGWC 240 (301)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p-~-~h~~g~~ 240 (301)
.|..+..... .........|..+++.||||+||.||+|.-+|..+..........+.....++. ...+ . +|..-..
T Consensus 177 ~f~~~~~~~~-~r~~~~~~~ds~~~l~~tSgs~G~pk~v~~~~~sl~~~fdw~~~~f~~t~s~~~-~~~~~~~~~d~i~~ 254 (1032)
T KOG1178|consen 177 SFQMVLHNED-TREIRVGGNDSTALLSFTSGSTGVPKGVAGTHFSLANAFDWMFTTFPPTGSDRF-TFKTSVYFDDTIQK 254 (1032)
T ss_pred hhhhhhccCC-CcceeeecccccceEeecccccccccccchhHHHHHhhhhhccccCCcCccchh-hhhheeecccchHH
Confidence 1111111111 122234667789999999999999999999999998877776666766666664 3222 2 3333333
Q ss_pred HHHHHHHhCCeEEeeCC---CCHHHHHHHHHhcCcceecCChHHHHHHHcCCCC
Q 046637 241 LTWAVAAQGGTNVCQRT---VNAKEIFDNITRHKVTHFGGAPTVLNMIANAPPV 291 (301)
Q Consensus 241 ~~~~~l~~g~~~v~~~~---~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~ 291 (301)
.....++.|..+..+.. -++..+.+.+++++++..+.+|++.+.++.....
T Consensus 255 ~~~~~L~~~~~l~~p~~~~~~~~~~l~~~le~y~i~~~~~~~a~~~~l~~~~~~ 308 (1032)
T KOG1178|consen 255 FIGALLFNGNNLLVPTATIKDTPGQLASTLERYGITVSHLLPAMCQLLLAILTT 308 (1032)
T ss_pred HHhhHhhcCceeecccccCccchhhHHHHHHhhhheeeeechhhhhhhhhhcCc
Confidence 34445666666665542 2479999999999999999999998888765544
|
|
| >TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase | Back alignment and domain information |
|---|
Probab=99.36 E-value=3.8e-12 Score=113.53 Aligned_cols=110 Identities=13% Similarity=-0.045 Sum_probs=87.0
Q ss_pred CCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHH---HHHhhCCCCCEEEEeccchhh-hhhHHHHHHHHhCCeEEee
Q 046637 180 KDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAA---ALFNEMGLMPTYLWCVPMFHC-NGWCLTWAVAAQGGTNVCQ 255 (301)
Q Consensus 180 ~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~---~~~~~~~~~~~~l~~~p~~h~-~g~~~~~~~l~~g~~~v~~ 255 (301)
.+.++++.+++||||||.||++.++|.++..+.... ...+++.++|++++..+..+. .++...+.+...|++++..
T Consensus 72 ~~~~~~~~~~~TSGTTG~Pk~v~~t~~~~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 151 (422)
T TIGR02155 72 VPREQVVRIHASSGTTGKPTVVGYTQNDIDTWSSVVARSIRAAGGRPGDLIHNAYGYGLFTGGLGAHYGAEKLGCTVVPI 151 (422)
T ss_pred CChHHcEEEEECCCCCCCCeEeccCHHHHHHHHHHHHHHHHHcCCCCCcEEEEccCccccchhHHHHHHHHHcCcEEEec
Confidence 355678899999999999999999999987654433 233577889998887665433 3333456678889999888
Q ss_pred CCCCHHHHHHHHHhcCcceecCChHHHHHHHcCC
Q 046637 256 RTVNAKEIFDNITRHKVTHFGGAPTVLNMIANAP 289 (301)
Q Consensus 256 ~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~ 289 (301)
+..++..+++.|++++||+++++|+++..|++..
T Consensus 152 ~~~~~~~~~~~i~~~~~t~l~~~Ps~l~~L~~~~ 185 (422)
T TIGR02155 152 SGGQTEKQVQLIQDFKPDIIMVTPSYMLNLLEEL 185 (422)
T ss_pred CCCCHHHHHHHHHHHCCCEEEEcHHHHHHHHHHH
Confidence 7778899999999999999999999999988653
|
Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in gram positive prokaryotes. In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions. |
| >TIGR03335 F390_ftsA coenzyme F390 synthetase | Back alignment and domain information |
|---|
Probab=99.12 E-value=4.9e-10 Score=100.41 Aligned_cols=107 Identities=17% Similarity=0.036 Sum_probs=82.8
Q ss_pred CCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHH---hhCCCCCEEEEeccchhhhhhH-HHHHHHHhCCeEEee
Q 046637 180 KDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALF---NEMGLMPTYLWCVPMFHCNGWC-LTWAVAAQGGTNVCQ 255 (301)
Q Consensus 180 ~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~---~~~~~~~~~l~~~p~~h~~g~~-~~~~~l~~g~~~v~~ 255 (301)
.+.++++.+.+||||||.||++.+||.++.......... .++.++|+++...|..+..|.. ..+.+...|++++..
T Consensus 83 ~~~~~i~~i~~TSGTTG~Pk~v~~T~~dl~~~~~~~~r~~~~~G~~~gD~vl~~~~~~~~~g~~~~~~~~~~~Ga~vi~~ 162 (445)
T TIGR03335 83 ADWKDIYTIHETSGTSGTPKSFFLTWDDWKRYAEKYARSFVSQGFTAGDRMVICASYGMNVGANTMTLAAREVGMSIIPE 162 (445)
T ss_pred CCHHHeEEEEeCCCCCCCcceeeecHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCCcchhHHHHHHHHHHcCCEEEcC
Confidence 345678899999999999999999999987665544333 3788899999998887765543 345667778876543
Q ss_pred CCCCHHHHHHHHHhcCcceecCChHHHHHHHcC
Q 046637 256 RTVNAKEIFDNITRHKVTHFGGAPTVLNMIANA 288 (301)
Q Consensus 256 ~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~ 288 (301)
.. ....++.|+++++|.+..+|+.+..|.+.
T Consensus 163 ~~--~~~~~~~i~~~~~t~l~~~ps~ll~La~~ 193 (445)
T TIGR03335 163 GK--CTFPIRIIESYRPTGIVASVFKLLRLARR 193 (445)
T ss_pred Cc--hhHHHHHHHHhCCCEEEECHHHHHHHHHH
Confidence 32 35678999999999999999998877653
|
This enzyme, characterized in Methanobacterium thermoautotrophicum and found in several other methanogens, modifies coenzyme F420 by ligation of AMP (or GMP) from ATP (or GTP). On F420, it activates an aromatic hydroxyl group, which is unusual chemistry for an adenylyltransferase. This enzyme name has been attached to numbers of uncharacterized genes likely to instead act as phenylacetate CoA ligase, based on proximity to predicted indolepyruvate ferredoxin oxidoreductase (1.2.7.8) genes. The enzyme acts during transient exposure of the organism to oxygen. |
| >KOG3628 consensus Predicted AMP-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.6e-09 Score=101.06 Aligned_cols=251 Identities=15% Similarity=0.062 Sum_probs=175.5
Q ss_pred CCCHHHHHHHHhhhcCCccEEEECC-----eeeeHHHHHHHHHHHHH-HHHhcCCCCCCEEEEEcCCC--HHHHHHHHHh
Q 046637 13 PLTPISFLERSAVVYRDRPSVVYGD-----VQYTWKETHQRCVKLAS-GLAHLGISPGDVVAALAPNV--PAMYELHFGV 84 (301)
Q Consensus 13 ~~~~~~~l~~~~~~~~~~~al~~~~-----~~~Ty~el~~~~~~la~-~L~~~gv~~g~~V~i~~~n~--~~~~~~~lA~ 84 (301)
...+...++.....++..+|.++-+ ..+||..+..++.++|+ .|.+.|+.++|+|.++...+ .++++..++|
T Consensus 93 ~~d~~avl~~~~nhs~~~ta~i~id~kgk~~~~twdkl~~rA~k~a~~~l~ksgl~~~~~vvL~Y~~~e~ie~~isl~gc 172 (1363)
T KOG3628|consen 93 LTDIIAVLRYRRNHSATSTAHICIDKKGKATSITWDKLLNRAEKVAHVELNKSGLKPGDRVVLYYRKCEAIEFLISLFGC 172 (1363)
T ss_pred hcchHHHHHhhccCCCCCceEEEEcCCCceeeeeHHHHHHHHHhhccHHhhccCCCCCcEEEEEEEhhhhhHHhhhhccc
Confidence 3445667777777788888988744 58999999999999999 67788999999999987765 6899999999
Q ss_pred hhccceeeecCCCCCHHHHHHHHHhcCceEEEEcCCchhhHHHHHHHhccccCCCCceEEccCCCCCCcccccCCCCccH
Q 046637 85 PMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVASSSGNLEY 164 (301)
Q Consensus 85 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 164 (301)
...|.+++|+.+..+.+++..+++....+++++............ .+ .++.+.+--.... ...+...+
T Consensus 173 ~l~g~~~vp~~e~~s~~el~~i~~~~~~~~~l~t~a~~r~~~~~~--~~---~s~~k~v~~w~t~-------~~k~~~~~ 240 (1363)
T KOG3628|consen 173 FLLGIVAVPLSELSSSEELKDIVNPTPERVALTTEAGERAFINDN--SP---VSLAKAVAWWKTN-------DFKGNYTK 240 (1363)
T ss_pred cccceeeccchhhhhhhhhhcccCCCccceEeehhhhHHHhhhcc--Cc---ccHHHHHHhhhcc-------cccceeeh
Confidence 999999999999999999999999999999988765443322211 00 0010000000000 00011111
Q ss_pred HHHHhhccccccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHH--------------------HhhCCCC
Q 046637 165 ESLLAIGKLREVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAAL--------------------FNEMGLM 224 (301)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~--------------------~~~~~~~ 224 (301)
+.. ..+..... ..+|-||.+++|.--|++++|+ ++.+...... .++....
T Consensus 241 ~k~--------~~P~~~~~-~~~i~~t~s~l~~~~g~V~~~~-~~~q~r~~~~~~nt~Pa~~~~~~~~~~~~~v~~~~~~ 310 (1363)
T KOG3628|consen 241 DKI--------KKPRMQLP-YGYIEFTRSPLGNLIGVVYKHK-FLPQMRVLTSIPNTNPARFAAAFYGCLHAHVFPVPSE 310 (1363)
T ss_pred hhc--------cCCceeee-eEEEEEeccchhceeeeEeecc-cccchhhhhhccCcChHHHHHhhhcchhhhccccCcc
Confidence 100 01112222 7899999999999999999998 5554332221 1123445
Q ss_pred CEEEEeccchhhhhhHH-HHHHHHhCCeEEeeCC---CCHHHHHHHHHhcCcceecCChHHHHHH
Q 046637 225 PTYLWCVPMFHCNGWCL-TWAVAAQGGTNVCQRT---VNAKEIFDNITRHKVTHFGGAPTVLNMI 285 (301)
Q Consensus 225 ~~~l~~~p~~h~~g~~~-~~~~l~~g~~~v~~~~---~~~~~~~~~i~~~~~t~~~~~P~~~~~l 285 (301)
++++...-..-..|+.. ++.+++.|.+.+.+++ +.|..+.+.+.++|++++..--..+...
T Consensus 311 ~~~l~~~~~s~~lGlilGV~~alfsg~c~i~~p~~~l~~pG~~~~l~~k~R~~~~ltd~~~Lkq~ 375 (1363)
T KOG3628|consen 311 DVLLTNLDPSQQLGLILGVLVALFSGYCTIGCPKEVLKPPGLIANLITKYRATWSLTDYAGLKQP 375 (1363)
T ss_pred cceeeccCcccccchhhhhhhhhhcCceeecCchhhcCCCcchhhhhccceeEEEeecccccCcc
Confidence 66777776777778775 7889999999998885 6788999999999999987754444433
|
|
| >COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.5e-06 Score=75.64 Aligned_cols=114 Identities=14% Similarity=0.058 Sum_probs=85.8
Q ss_pred CCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHh---hCCCCCEEEEeccc-hhhhhhHHHHHHHHhCCeEEe
Q 046637 179 PKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFN---EMGLMPTYLWCVPM-FHCNGWCLTWAVAAQGGTNVC 254 (301)
Q Consensus 179 ~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~---~~~~~~~~l~~~p~-~h~~g~~~~~~~l~~g~~~v~ 254 (301)
....++...|--||||||+|+-+.+++..+..........+ +...+|++..+.-. .+..|+..-+.+-..|++++-
T Consensus 86 ~~~~~~i~~ihaSSGTTGkPt~~~~t~~D~~~wa~~~aR~~~~~g~~~gd~v~~~~~yGl~tgg~~~~~ga~rig~~vip 165 (438)
T COG1541 86 AVPKEEIVRIHASSGTTGKPTVFGYTAKDIERWAELLARSLYSAGVRKGDKVQNAYGYGLFTGGLGLHYGAERIGATVIP 165 (438)
T ss_pred cccccceEEEEccCCCCCCceeeecCHHHHHHHHHHHHHHHHHccCCCCCEEEEEeeeccccCCchhHHHHHhhCEEEEc
Confidence 35556677788999999999999999999877666555544 56677876555442 223344444556667888777
Q ss_pred eCCCCHHHHHHHHHhcCcceecCChHHHHHHHcCCCCc
Q 046637 255 QRTVNAKEIFDNITRHKVTHFGGAPTVLNMIANAPPVF 292 (301)
Q Consensus 255 ~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~ 292 (301)
...-+.+.-++.++.+++|++.++|+.+..|.+.....
T Consensus 166 ~~~g~~~~~~~l~~df~~tvI~~tps~~l~lae~~~~~ 203 (438)
T COG1541 166 ISGGNTERQLELMKDFKPTVIAATPSYLLYLAEEAEEE 203 (438)
T ss_pred cCCccHHHHHHHHHhcCCcEEEEChHHHHHHHHHHHHc
Confidence 76668899999999999999999999999998765544
|
|
| >COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.022 Score=50.23 Aligned_cols=93 Identities=20% Similarity=0.180 Sum_probs=76.5
Q ss_pred eeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHH--HHHHHHHhhhccceeeecCCCCCHHHHHHHHHhcCceEEE
Q 046637 39 QYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPA--MYELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIF 116 (301)
Q Consensus 39 ~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~--~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi 116 (301)
-+|+.+....+..+|+.|...|..+||+|.....-+.. -.-..+|+.++|+.++|+.+. .-+.-..++++.++.++.
T Consensus 109 ~~t~~D~~~wa~~~aR~~~~~g~~~gd~v~~~~~yGl~tgg~~~~~ga~rig~~vip~~~g-~~~~~~~l~~df~~tvI~ 187 (438)
T COG1541 109 GYTAKDIERWAELLARSLYSAGVRKGDKVQNAYGYGLFTGGLGLHYGAERIGATVIPISGG-NTERQLELMKDFKPTVIA 187 (438)
T ss_pred ecCHHHHHHHHHHHHHHHHHccCCCCCEEEEEeeeccccCCchhHHHHHhhCEEEEccCCc-cHHHHHHHHHhcCCcEEE
Confidence 58999999999999999999999999998887653221 256788899999999999884 556777899999999999
Q ss_pred EcCCchhhHHHHHHHh
Q 046637 117 VDYQLLPIAQGAFEIL 132 (301)
Q Consensus 117 ~~~~~~~~~~~~~~~~ 132 (301)
+.......+.+.....
T Consensus 188 ~tps~~l~lae~~~~~ 203 (438)
T COG1541 188 ATPSYLLYLAEEAEEE 203 (438)
T ss_pred EChHHHHHHHHHHHHc
Confidence 9988776666655554
|
|
| >TIGR02304 aden_form_hyp probable adenylate-forming enzyme | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.03 Score=49.98 Aligned_cols=100 Identities=11% Similarity=0.031 Sum_probs=62.1
Q ss_pred ceEEEeccCCCCCCCeeeechHHHHHHHHH-HHHHh--hCCCCCEEEEeccchhhhhhHHHHHHHHhCCe-EEeeC-CCC
Q 046637 185 PIALNYTSGTTSSPKGVICSHRGAYLNSLA-AALFN--EMGLMPTYLWCVPMFHCNGWCLTWAVAAQGGT-NVCQR-TVN 259 (301)
Q Consensus 185 ~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~-~~~~~--~~~~~~~~l~~~p~~h~~g~~~~~~~l~~g~~-~v~~~-~~~ 259 (301)
-..+..||||||.|=.+..+.......... +.... +...++++..... ..+ ..+.++.+... +-... ..+
T Consensus 101 ~~~v~~TSGSSG~p~~f~~~~~~~~~~~a~~~~~~~~~g~~~g~r~a~~~~---~~~--~ly~~~~~~~~~~~~~~l~~~ 175 (430)
T TIGR02304 101 NISVGLSSGTSGRRGLFVVSPEEQQMWAGGILAKVLPDGLFAKHRIAFFLR---ADN--NLYQSVNNRWISLDFFDLLAP 175 (430)
T ss_pred cEEEEECCCCCCCceEEEECHHHHHHHHHHHHhhhCccccccCCcEEEEEc---cCh--hHHHHHHhccceeeecCCCcC
Confidence 456778999999999999999876433222 22221 3344455443321 111 12222322221 22222 246
Q ss_pred HHHHHHHHHhcCcceecCChHHHHHHHcCC
Q 046637 260 AKEIFDNITRHKVTHFGGAPTVLNMIANAP 289 (301)
Q Consensus 260 ~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~ 289 (301)
.+..++.|++++|+++.+.|+.+..|.+..
T Consensus 176 ~~~~l~~L~~~~P~~L~g~pS~l~~LA~~~ 205 (430)
T TIGR02304 176 FQAHIKRLNQRKPSIIVAPPSVLRALALEV 205 (430)
T ss_pred HHHHHHHHHHhCCCEEEEcHHHHHHHHHHH
Confidence 789999999999999999999999998753
|
Members of this family form a distinct clade within a larger family of proteins that also includes coenzyme F390 synthetase, an enzyme known in Methanobacterium thermoautotrophicum and a few other methanogenic archaea. That enzyme adenylates coenzyme F420 to F390, a reversible process, during oxygen stress. Other informative homologies include domains of the non-ribosomal peptide synthetases involved in activation by adenylation. The family defined by this model is likely to be of an adenylate-forming enzyme related to but distinct from coenzyme F390 synthetase. |
| >TIGR03335 F390_ftsA coenzyme F390 synthetase | Back alignment and domain information |
|---|
Probab=93.51 E-value=1.3 Score=40.01 Aligned_cols=80 Identities=13% Similarity=0.138 Sum_probs=61.6
Q ss_pred eeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHH--HHHHHHHhhhccceeeecCCCCCHHHHHHHHHhcCceEEE
Q 046637 39 QYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPA--MYELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIF 116 (301)
Q Consensus 39 ~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~--~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi 116 (301)
.+|.+++...+...+..+...|+.+||++.+..+.+.. .....+++...|+.+++... .+....+++..++.+++
T Consensus 105 ~~T~~dl~~~~~~~~r~~~~~G~~~gD~vl~~~~~~~~~g~~~~~~~~~~~Ga~vi~~~~---~~~~~~~i~~~~~t~l~ 181 (445)
T TIGR03335 105 FLTWDDWKRYAEKYARSFVSQGFTAGDRMVICASYGMNVGANTMTLAAREVGMSIIPEGK---CTFPIRIIESYRPTGIV 181 (445)
T ss_pred eecHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCCcchhHHHHHHHHHHcCCEEEcCCc---hhHHHHHHHHhCCCEEE
Confidence 58999999998888988888999999999988765542 33456778899988776543 24557788999999887
Q ss_pred EcCCc
Q 046637 117 VDYQL 121 (301)
Q Consensus 117 ~~~~~ 121 (301)
.....
T Consensus 182 ~~ps~ 186 (445)
T TIGR03335 182 ASVFK 186 (445)
T ss_pred ECHHH
Confidence 75543
|
This enzyme, characterized in Methanobacterium thermoautotrophicum and found in several other methanogens, modifies coenzyme F420 by ligation of AMP (or GMP) from ATP (or GTP). On F420, it activates an aromatic hydroxyl group, which is unusual chemistry for an adenylyltransferase. This enzyme name has been attached to numbers of uncharacterized genes likely to instead act as phenylacetate CoA ligase, based on proximity to predicted indolepyruvate ferredoxin oxidoreductase (1.2.7.8) genes. The enzyme acts during transient exposure of the organism to oxygen. |
| >TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase | Back alignment and domain information |
|---|
Probab=93.17 E-value=0.92 Score=40.57 Aligned_cols=88 Identities=16% Similarity=0.201 Sum_probs=67.3
Q ss_pred eeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCH--HHHHHHHHhhhccceeeecCCCCCHHHHHHHHHhcCceEEE
Q 046637 39 QYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVP--AMYELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIF 116 (301)
Q Consensus 39 ~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~--~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi 116 (301)
.+|..++......++..+...|+++||++....+.+. ......++....|+.++++.+.. .+.+...|+..++.+++
T Consensus 94 ~~t~~~~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~i~~~~~t~l~ 172 (422)
T TIGR02155 94 GYTQNDIDTWSSVVARSIRAAGGRPGDLIHNAYGYGLFTGGLGAHYGAEKLGCTVVPISGGQ-TEKQVQLIQDFKPDIIM 172 (422)
T ss_pred ccCHHHHHHHHHHHHHHHHHcCCCCCcEEEEccCccccchhHHHHHHHHHcCcEEEecCCCC-HHHHHHHHHHHCCCEEE
Confidence 4788888877777888888889999999887655432 22334567888999999887654 57788999999999999
Q ss_pred EcCCchhhHHH
Q 046637 117 VDYQLLPIAQG 127 (301)
Q Consensus 117 ~~~~~~~~~~~ 127 (301)
........+.+
T Consensus 173 ~~Ps~l~~L~~ 183 (422)
T TIGR02155 173 VTPSYMLNLLE 183 (422)
T ss_pred EcHHHHHHHHH
Confidence 98776655443
|
Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in gram positive prokaryotes. In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions. |
| >PF04443 LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR007534 LuxE is an acyl-protein synthetase found in bioluminescent bacteria | Back alignment and domain information |
|---|
Probab=92.20 E-value=1.3 Score=38.72 Aligned_cols=109 Identities=12% Similarity=0.082 Sum_probs=62.2
Q ss_pred CCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhh----CCCCC-EEEEeccchhh-hhhHH----HHHHHHh
Q 046637 179 PKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNE----MGLMP-TYLWCVPMFHC-NGWCL----TWAVAAQ 248 (301)
Q Consensus 179 ~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~----~~~~~-~~l~~~p~~h~-~g~~~----~~~~l~~ 248 (301)
....+.+..++-||||||.|--+.+.+.++..+.......+. ..... .++...|-... ..+.. .+..+..
T Consensus 85 S~~~e~~~~~~tSSGTtG~~S~i~~D~~t~~~~~~~~~~~~~~~~~~~~~~~~il~l~p~~~~~~~~~~~~~~~~~~~~~ 164 (365)
T PF04443_consen 85 SVPEEEVEKVFTSSGTTGQPSRIFRDRETAERQQKSLNKIFQHFLGPSRLPMLILDLSPSPENRNSFSARYAGILGELFF 164 (365)
T ss_pred ecChhhheeEEECCCCCCCCcEEEECHHHHHHHHHHHHHHHHhhcccccCCeEEEEecCCcccccchHHHHHHHHhhccc
Confidence 355667788899999999987777777766655544443332 22222 23333444222 11221 1222333
Q ss_pred CCeEEeeC--CCCHHHHHHHHH----hcCcceecCChHHHHHHHcC
Q 046637 249 GGTNVCQR--TVNAKEIFDNIT----RHKVTHFGGAPTVLNMIANA 288 (301)
Q Consensus 249 g~~~v~~~--~~~~~~~~~~i~----~~~~t~~~~~P~~~~~l~~~ 288 (301)
+.. .+.. .++.+.+++.+. +.++..++..|.++-.++..
T Consensus 165 ~~~-~~l~~~~ld~~~~~~~L~~~~~~~~pv~l~Gftf~~~~~~~~ 209 (365)
T PF04443_consen 165 GSR-FALDNDELDLEGLIEALFRAEHSGEPVLLFGFTFFIWFLLDE 209 (365)
T ss_pred Cce-eeecCCccCHHHHHHHHHHHHhCCCCEEEECchHHHHHHHHH
Confidence 444 3333 467777776664 45688888888877766643
|
LuxE catalyses the formation of an acyl-protein thiolester from a fatty acid and a protein. This is the second step in the bioluminescent fatty acid reduction system, which converts tetradecanoic acid to the aldehyde substrate of the luciferase-catalysed bioluminescence reaction []. A conserved cysteine found at position 364 in Photobacterium phosphoreum LuxE (Q52100 from SWISSPROT) is thought to be acylated during the transfer of the acyl group from the synthetase subunit to the reductase. The C-terminal of the synthetase is though to act as a flexible arm to transfer acyl groups between the sites of activation and reduction []. A LuxE domain is also found in the Vibrio cholerae RBFN protein (Q06961 from SWISSPROT), which is involved in the biosynthesis of the O-antigen component 3-deoxy-L-glycero-tetronic acid. This entry represents the LuxE domain, which is found in archaeal and bacterial proteins.; GO: 0047474 long-chain fatty acid luciferin component ligase activity, 0008218 bioluminescence |
| >PF00501 AMP-binding: AMP-binding enzyme; InterPro: IPR000873 A number of prokaryotic and eukaryotic enzymes, which appear to act via an ATP-dependent covalent binding of AMP to their substrate, share a region of sequence similarity [, , ] | Back alignment and domain information |
|---|
Probab=89.93 E-value=4.9 Score=35.55 Aligned_cols=89 Identities=9% Similarity=-0.081 Sum_probs=66.8
Q ss_pred CCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHh---hCCCCCEEEEeccchhhhhhHHHHHHHHhCCeEEeeC
Q 046637 180 KDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFN---EMGLMPTYLWCVPMFHCNGWCLTWAVAAQGGTNVCQR 256 (301)
Q Consensus 180 ~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~---~~~~~~~~l~~~p~~h~~g~~~~~~~l~~g~~~v~~~ 256 (301)
..++.++++. -....+|+..+...+......+ +++.++++....|-.- .-+...++++..|+..+.++
T Consensus 7 ~~pd~~a~~~--------~~~~~~Ty~~l~~~v~~la~~L~~~g~~~~~~V~i~~~n~~-~~~~~~~A~~~~G~~~v~l~ 77 (417)
T PF00501_consen 7 RYPDRIALID--------DEGRSLTYKQLYERVRKLAAALRKLGVKKGDRVAILLPNSI-EFVVAFLACLRAGAIPVPLD 77 (417)
T ss_dssp HSTTSEEEEE--------TTTEEEEHHHHHHHHHHHHHHHHHTTSSTTSEEEEEESSSH-HHHHHHHHHHHTT-EEEEEE
T ss_pred hCCCceEEEE--------CCCEEEEHHHHHHHHHHHhhHHHHhCCCccccccccCCccc-eeeeeecccccccccccccc
Confidence 3466777766 3457899999988777665544 6678898888777642 33445788888999999884
Q ss_pred -CCCHHHHHHHHHhcCcceecC
Q 046637 257 -TVNAKEIFDNITRHKVTHFGG 277 (301)
Q Consensus 257 -~~~~~~~~~~i~~~~~t~~~~ 277 (301)
......+.+.+++.+++.+++
T Consensus 78 ~~~~~~~~~~~l~~~~~~~ii~ 99 (417)
T PF00501_consen 78 PSLSEDELRHILRQSGPKVIIT 99 (417)
T ss_dssp TTSSHHHHHHHHHHHTESEEEE
T ss_pred cccccccccccccccceeEEEE
Confidence 678899999999999999996
|
This region is a Ser/Thr/Gly-rich domain that is further characterised by a conserved Pro-Lys-Gly triplet. The family of enzymes includes luciferase, long chain fatty acid Co-A ligase, acetyl-CoA synthetase and various other closely-related synthetases.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2V7B_A 2Y4O_B 2VSQ_A 3L8C_B 1RY2_A 3KXW_A 3LNV_A 3ETC_B 3A9U_A 3A9V_A .... |
| >TIGR03089 conserved hypothetical protein TIGR03089 | Back alignment and domain information |
|---|
Probab=88.78 E-value=3.4 Score=33.50 Aligned_cols=75 Identities=21% Similarity=0.273 Sum_probs=53.2
Q ss_pred CccEEEECCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCH--HHHHHHHHhhhccceeeecCCCCCHHHHHHH
Q 046637 29 DRPSVVYGDVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVP--AMYELHFGVPMAGAVLCTLNTRHDSAMVSVL 106 (301)
Q Consensus 29 ~~~al~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~--~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~ 106 (301)
+.+|++....-.|...+.... ...|+.++|++. ..|-.- .+...+++++..|+..+.+ ++++++++-+.
T Consensus 150 ~D~a~l~yTsg~~~~~~~~~~-------~~~~l~~~D~~l-~~Pl~H~~gl~~~~~~~l~~G~t~v~~-~rFd~~~~l~~ 220 (227)
T TIGR03089 150 TAPALVAGGGEWTGAELVAAA-------RAAGLPPGDRVL-VLAWTDLEDFLATLLAPLAAGGSLVLV-THPDPARLDQI 220 (227)
T ss_pred CcceeeeccccccHHHHHHHH-------hhcCCCCCCeEE-ecCCCchHHHHHHHHHHhccCceEEEe-cCCCHHHHHHH
Confidence 455655433223444433322 566899999999 877643 3445789999999988887 69999999999
Q ss_pred HHhcCc
Q 046637 107 LRHSEA 112 (301)
Q Consensus 107 l~~~~~ 112 (301)
+++.++
T Consensus 221 i~~~~v 226 (227)
T TIGR03089 221 AETERV 226 (227)
T ss_pred HHhhcC
Confidence 988875
|
This protein family is found, so far, only in the Actinobacteria (Streptomyces, Mycobacterium, Corynebacterium, Nocardia, Propionibacterium, etc.) and never more than one to a genome. Members show twilight-level sequence similarity to family of AMP-binding enzymes described by Pfam model pfam00501. |
| >TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG | Back alignment and domain information |
|---|
Probab=88.36 E-value=7.7 Score=32.58 Aligned_cols=91 Identities=21% Similarity=0.178 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHhhhccceeeecCCCC----CHHHHHHHHHhcCceEEEEcCCch
Q 046637 47 QRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAGAVLCTLNTRH----DSAMVSVLLRHSEAKIIFVDYQLL 122 (301)
Q Consensus 47 ~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~----~~~~l~~~l~~~~~~~vi~~~~~~ 122 (301)
-++..||..|++.| ..|.+++.......... +...|..+..++-.. ..+++..+++..+++++|+|.-..
T Consensus 18 ~Rcl~LA~~l~~~g----~~v~f~~~~~~~~~~~~--i~~~g~~v~~~~~~~~~~~d~~~~~~~l~~~~~d~vV~D~y~~ 91 (279)
T TIGR03590 18 MRCLTLARALHAQG----AEVAFACKPLPGDLIDL--LLSAGFPVYELPDESSRYDDALELINLLEEEKFDILIVDHYGL 91 (279)
T ss_pred HHHHHHHHHHHHCC----CEEEEEeCCCCHHHHHH--HHHcCCeEEEecCCCchhhhHHHHHHHHHhcCCCEEEEcCCCC
Confidence 46788999997654 46777777765554333 357777766664432 345788999999999999997432
Q ss_pred -hhHHHHHHHhccccCCCCceEEccCCC
Q 046637 123 -PIAQGAFEILSKTSAKLPLLVLVPECG 149 (301)
Q Consensus 123 -~~~~~~~~~~~~~~~~~~~i~~~~~~~ 149 (301)
......... ...+++++++..
T Consensus 92 ~~~~~~~~k~------~~~~l~~iDD~~ 113 (279)
T TIGR03590 92 DADWEKLIKE------FGRKILVIDDLA 113 (279)
T ss_pred CHHHHHHHHH------hCCeEEEEecCC
Confidence 222222221 345667777653
|
This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases. |
| >PRK07656 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=88.00 E-value=5.3 Score=36.44 Aligned_cols=84 Identities=18% Similarity=0.131 Sum_probs=62.0
Q ss_pred eeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCH--HHHHHHHHhhhccceeeecCCCCCHHHHHHHHHhcCceEE
Q 046637 38 VQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVP--AMYELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKII 115 (301)
Q Consensus 38 ~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~--~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~v 115 (301)
-.+|++.+...+..+.. ..++++++++....+-.- .+...+++++..|+.+++. +..+.+.+...+++.++.++
T Consensus 184 v~~s~~~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~-~~~~~~~~~~~i~~~~~t~~ 259 (513)
T PRK07656 184 AMLTHRQLLSNAADWAE---YLGLTEGDRYLAANPFFHVFGYKAGVNAPLMRGATILPL-PVFDPDEVFRLIETERITVL 259 (513)
T ss_pred EEEecHHHHHHHHHHHH---hhCCCCCCeEEEccchHHHHHHHHHHHHHHHcCceEEec-CcCCHHHHHHHHHHhCCeEE
Confidence 36899988776655433 347889999888777533 3345578889999887775 56788999999999999998
Q ss_pred EEcCCchhhH
Q 046637 116 FVDYQLLPIA 125 (301)
Q Consensus 116 i~~~~~~~~~ 125 (301)
+........+
T Consensus 260 ~~~p~~~~~l 269 (513)
T PRK07656 260 PGPPTMYNSL 269 (513)
T ss_pred echHHHHHHH
Confidence 8876555443
|
|
| >KOG1176 consensus Acyl-CoA synthetase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=86.99 E-value=4.2 Score=37.64 Aligned_cols=87 Identities=14% Similarity=-0.094 Sum_probs=71.2
Q ss_pred eeeechHHHHHHHHHHHHHhh-----CCCCCEEEEeccchhhhhhHHHHHHHHhCCeEEee-CCCCHHHHHHHHHhcCcc
Q 046637 200 GVICSHRGAYLNSLAAALFNE-----MGLMPTYLWCVPMFHCNGWCLTWAVAAQGGTNVCQ-RTVNAKEIFDNITRHKVT 273 (301)
Q Consensus 200 ~v~~s~~~l~~~~~~~~~~~~-----~~~~~~~l~~~p~~h~~g~~~~~~~l~~g~~~v~~-~~~~~~~~~~~i~~~~~t 273 (301)
|..+|+..+...+...+..+. .+.+|++...+|-+--+.. ..+++++.|+.+... +.+++.++...++..+++
T Consensus 43 g~~~T~~e~~~~~~r~A~~L~~~~~~i~~gDvV~i~~pNs~~~~~-~~la~~~~Ga~~~~~Np~~~~~ei~~~~~~s~~k 121 (537)
T KOG1176|consen 43 GRELTYSELHDRCRRLASALSELGLGIKKGDVVGILAPNTPEFVE-LALAVPMAGAVLNPLNPRLTASEIAKQLKDSKPK 121 (537)
T ss_pred CcEEcHHHHHHHHHHHHHHHHhcCCCCCCCCEEEEEcCCCHHHHH-HHHHHHHcCccccccCcccCHHHHHHHHHhcCCe
Confidence 899999999988888777664 6789999999997554332 357788888888766 478999999999999999
Q ss_pred eecCChHHHHHHHc
Q 046637 274 HFGGAPTVLNMIAN 287 (301)
Q Consensus 274 ~~~~~P~~~~~l~~ 287 (301)
.+++....+..+.+
T Consensus 122 iif~d~~~~~~i~~ 135 (537)
T KOG1176|consen 122 LIFVDEDFYDKISE 135 (537)
T ss_pred EEEEcCchHHHHHH
Confidence 99998888877744
|
|
| >PRK06187 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=86.76 E-value=5.6 Score=36.31 Aligned_cols=83 Identities=16% Similarity=0.199 Sum_probs=62.0
Q ss_pred eeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHH-HHHHHHHhhhccceeeecCCCCCHHHHHHHHHhcCceEEEE
Q 046637 39 QYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPA-MYELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFV 117 (301)
Q Consensus 39 ~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~-~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~ 117 (301)
.+|++.+...+..... ..|++++|++....+.... .+...++++..|+..+..+.. +.+.+...+++.++..+++
T Consensus 186 ~~t~~~l~~~~~~~~~---~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~G~~~v~~~~~-~~~~~~~~l~~~~~t~l~~ 261 (521)
T PRK06187 186 VLSHRNLFLHSLAVCA---WLKLSRDDVYLVIVPMFHVHAWGLPYLALMAGAKQVIPRRF-DPENLLDLIETERVTFFFA 261 (521)
T ss_pred EeehHHHHHHHHHHHH---hhCCCCCCEEEEeCCchHHhhHHHHHHHHHhCCEEEecCCC-CHHHHHHHHHHhCCeEEEc
Confidence 6799998876666555 4588999998888775432 233445578889888777664 8899999999999999998
Q ss_pred cCCchhhH
Q 046637 118 DYQLLPIA 125 (301)
Q Consensus 118 ~~~~~~~~ 125 (301)
.......+
T Consensus 262 ~p~~~~~l 269 (521)
T PRK06187 262 VPTIWQML 269 (521)
T ss_pred hHHHHHHH
Confidence 76655443
|
|
| >PRK06334 long chain fatty acid--[acyl-carrier-protein] ligase; Validated | Back alignment and domain information |
|---|
Probab=86.22 E-value=18 Score=33.44 Aligned_cols=98 Identities=7% Similarity=0.007 Sum_probs=66.8
Q ss_pred cCCccEEEEC---------CeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCH--HHHHHHHHhhhccceeeecC
Q 046637 27 YRDRPSVVYG---------DVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVP--AMYELHFGVPMAGAVLCTLN 95 (301)
Q Consensus 27 ~~~~~al~~~---------~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~--~~~~~~lA~~~~G~~~v~l~ 95 (301)
.++.++++.. +-.+|++.+...+.... ...++.++|++....|-.- .+....+..+..|+..+...
T Consensus 181 ~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~---~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~vv~~~ 257 (539)
T PRK06334 181 DPEDVAVILFTSGTEKLPKGVPLTHANLLANQRACL---KFFSPKEDDVMMSFLPPFHAYGFNSCTLFPLLSGVPVVFAY 257 (539)
T ss_pred CcCCEEEEEECCCCCCCCCEEEEcHHHHHHHHHHHH---HhcCCCCCceEEEecchHhhhhhHHHHHHHHHcCCeEEEec
Confidence 4566776652 14689988876654443 3457888998887776422 22333566677887776665
Q ss_pred CCCCHHHHHHHHHhcCceEEEEcCCchhhHHH
Q 046637 96 TRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQG 127 (301)
Q Consensus 96 ~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~ 127 (301)
.....+.+...+++.++.++.........+.+
T Consensus 258 ~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~ 289 (539)
T PRK06334 258 NPLYPKKIVEMIDEAKVTFLGSTPVFFDYILK 289 (539)
T ss_pred CCCCHHHHHHHHHHhCCcEEEecHHHHHHHHH
Confidence 56788999999999999999887766655433
|
|
| >KOG1177 consensus Long chain fatty acid acyl-CoA ligase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=85.36 E-value=13 Score=33.72 Aligned_cols=93 Identities=8% Similarity=0.015 Sum_probs=70.0
Q ss_pred cCCccEEEEC---------CeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCC--CHHHHHHHHHhhhccceeeecC
Q 046637 27 YRDRPSVVYG---------DVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPN--VPAMYELHFGVPMAGAVLCTLN 95 (301)
Q Consensus 27 ~~~~~al~~~---------~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n--~~~~~~~~lA~~~~G~~~v~l~ 95 (301)
.||..+-+.. +..+|=-++.+.+..++.. .|+...+++++-.|- +.-.++..+|++..|+..|.-.
T Consensus 232 ~pdd~~niQFTSGTTG~PKgatLsH~~~~Nna~~vg~r---~g~~e~~~i~~~~Pl~H~~G~~~~~ma~l~~gat~Vfp~ 308 (596)
T KOG1177|consen 232 SPDDAVNIQFTSGTTGAPKGATLSHYNFLNNARAVGAR---AGYNEKHRICIPNPLYHCFGCVLGVMAALMHGATIVFPA 308 (596)
T ss_pred CCCCceEEEeccCCCCCCcceeeehhhhhhhHHHHHHH---hCcCcceEEEecCchHHHHHHHHHHHHHHHhCcEEEeeC
Confidence 4566555541 2589999999988877654 366665455544332 3345788999999999999999
Q ss_pred CCCCHHHHHHHHHhcCceEEEEcCCch
Q 046637 96 TRHDSAMVSVLLRHSEAKIIFVDYQLL 122 (301)
Q Consensus 96 ~~~~~~~l~~~l~~~~~~~vi~~~~~~ 122 (301)
|.+.+...-..+.+.+|..++......
T Consensus 309 ~~f~~k~alqai~~ekcT~l~gtPtM~ 335 (596)
T KOG1177|consen 309 PSFDPKDALQAISNEKCTTLYGTPTMF 335 (596)
T ss_pred CCCChHHHHHHHHhhceEEEecChHHH
Confidence 999999999999999999999876544
|
|
| >COG0031 CysK Cysteine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=85.31 E-value=18 Score=30.69 Aligned_cols=69 Identities=19% Similarity=0.149 Sum_probs=48.3
Q ss_pred HHHHHHHHhcC-CCCCCEEEEEcCCCHHHHHHHHHhhhccceeeecCCCCCHHHHHHHHHhcCceEEEEcC
Q 046637 50 VKLASGLAHLG-ISPGDVVAALAPNVPAMYELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDY 119 (301)
Q Consensus 50 ~~la~~L~~~g-v~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~ 119 (301)
..+-....+.| ++||+ ..|=..++---+...+.|...|.-++.+=|..-+.+-..+|+..++.+++++.
T Consensus 47 ~~mI~~Ae~~G~l~pG~-tIVE~TSGNTGI~LA~vaa~~Gy~~iivmP~~~S~er~~~l~a~GAevi~t~~ 116 (300)
T COG0031 47 LYMIEDAEKRGLLKPGG-TIVEATSGNTGIALAMVAAAKGYRLIIVMPETMSQERRKLLRALGAEVILTPG 116 (300)
T ss_pred HHHHHHHHHcCCCCCCC-EEEEcCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEcCC
Confidence 33333344455 89998 44444444445555566667788777777777778889999999999999997
|
|
| >PRK08315 AMP-binding domain protein; Validated | Back alignment and domain information |
|---|
Probab=85.24 E-value=8.1 Score=35.80 Aligned_cols=82 Identities=9% Similarity=0.080 Sum_probs=61.0
Q ss_pred eeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCC--CHHHHHHHHHhhhccceeeecCCCCCHHHHHHHHHhcCceEE
Q 046637 38 VQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPN--VPAMYELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKII 115 (301)
Q Consensus 38 ~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n--~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~v 115 (301)
-.+|++.+...+..+... .+++++|++....+- ...++..+++++..|+..+......++..+...+++.++.++
T Consensus 217 v~~s~~~l~~~~~~~~~~---~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~l~~~~~t~~ 293 (559)
T PRK08315 217 ATLTHRNILNNGYFIGEA---MKLTEEDRLCIPVPLYHCFGMVLGNLACVTHGATMVYPGEGFDPLATLAAVEEERCTAL 293 (559)
T ss_pred EEeeHHHHHHHHHHHHHh---cCCCCCceEEEecCcHHHHHHHHHHHHHHhccceEEEecCCCCHHHHHHHHHHcCCeEE
Confidence 368888887665554433 488999998887775 334455678888889888766667788899999999999998
Q ss_pred EEcCCch
Q 046637 116 FVDYQLL 122 (301)
Q Consensus 116 i~~~~~~ 122 (301)
+......
T Consensus 294 ~~~P~~~ 300 (559)
T PRK08315 294 YGVPTMF 300 (559)
T ss_pred ecchHHH
Confidence 8765543
|
|
| >PLN03052 acetate--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=84.21 E-value=19 Score=34.99 Aligned_cols=99 Identities=11% Similarity=-0.026 Sum_probs=70.5
Q ss_pred CCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHH---hhCCCCCEEEEeccchhhhhhHHHHHHHHhCCeEEee-C
Q 046637 181 DECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALF---NEMGLMPTYLWCVPMFHCNGWCLTWAVAAQGGTNVCQ-R 256 (301)
Q Consensus 181 ~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~---~~~~~~~~~l~~~p~~h~~g~~~~~~~l~~g~~~v~~-~ 256 (301)
.++.+|++.-..+..|.+ ...+|...|...+...... .++.++|++...+|..- -.+...++++..|+..+.+ +
T Consensus 188 ~pd~~Ai~~~~e~~~~~~-~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GdrVai~~pn~~-e~via~LA~~~~Gav~vpi~p 265 (728)
T PLN03052 188 TDDSIAIIWRDEGSDDLP-VNRMTLSELRSQVSRVANALDALGFEKGDAIAIDMPMNV-HAVIIYLAIILAGCVVVSIAD 265 (728)
T ss_pred CCCCeEEEEECCCCCCCc-eEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCH-HHHHHHHHHHHcCCEEEeeCC
Confidence 456666654332221222 3568999998777766554 46889999999988532 3334567888889888877 5
Q ss_pred CCCHHHHHHHHHhcCcceecCChHH
Q 046637 257 TVNAKEIFDNITRHKVTHFGGAPTV 281 (301)
Q Consensus 257 ~~~~~~~~~~i~~~~~t~~~~~P~~ 281 (301)
.+.++.+...+++.++..+++....
T Consensus 266 ~~~~~~l~~rl~~~~~k~lit~d~~ 290 (728)
T PLN03052 266 SFAPSEIATRLKISKAKAIFTQDVI 290 (728)
T ss_pred CCCHHHHHHHHHhcCceEEEEcCcc
Confidence 7889999999999999999887643
|
|
| >PRK12583 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=83.76 E-value=10 Score=35.07 Aligned_cols=82 Identities=15% Similarity=0.161 Sum_probs=60.3
Q ss_pred eeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCC--CHHHHHHHHHhhhccceeeecCCCCCHHHHHHHHHhcCceEE
Q 046637 38 VQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPN--VPAMYELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKII 115 (301)
Q Consensus 38 ~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n--~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~v 115 (301)
-.+|++.+...+..+... .|++++|++....+- ....+..+++++..|+.++........+.+...+++.++.++
T Consensus 219 v~~s~~~l~~~~~~~~~~---~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~v~~~~~~~~~~~~~~~i~~~~~t~l 295 (558)
T PRK12583 219 ATLSHHNILNNGYFVAES---LGLTEHDRLCVPVPLYHCFGMVLANLGCMTVGACLVYPNEAFDPLATLQAVEEERCTAL 295 (558)
T ss_pred EEeeHHHHHHHHHHHHHH---hCCCCCCeEEEecCchhhhhHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHcCCeEE
Confidence 368999887666655443 478899998776654 234566678888889887755556788888999999999998
Q ss_pred EEcCCch
Q 046637 116 FVDYQLL 122 (301)
Q Consensus 116 i~~~~~~ 122 (301)
+......
T Consensus 296 ~~~P~~~ 302 (558)
T PRK12583 296 YGVPTMF 302 (558)
T ss_pred eccHHHH
Confidence 8766543
|
|
| >PF03321 GH3: GH3 auxin-responsive promoter; InterPro: IPR004993 Transcription of the gene family, GH3, has been shown to be specifically induced by the plant hormone auxin | Back alignment and domain information |
|---|
Probab=83.69 E-value=0.58 Score=43.21 Aligned_cols=32 Identities=25% Similarity=0.122 Sum_probs=26.6
Q ss_pred CCCCCCceEEEeccCCCCC-CCeeeechHHHHH
Q 046637 179 PKDECDPIALNYTSGTTSS-PKGVICSHRGAYL 210 (301)
Q Consensus 179 ~~~~~~~~~i~~TSGtTG~-pK~v~~s~~~l~~ 210 (301)
...++.+.+...||||||. ||-+.+|...+..
T Consensus 76 vL~~~~~~~f~~TSGTTg~~~K~IP~T~~~l~~ 108 (528)
T PF03321_consen 76 VLTPGPPIYFALTSGTTGGKSKLIPYTKEFLKE 108 (528)
T ss_dssp CTSSS--SEEEEEEEEETTEEEEEEESHHHHHH
T ss_pred CCCCCCCCeEEeCCCCCCCCCceeeccHHHHHH
Confidence 4667789999999999999 9999999998755
|
The auxin-responsive GH3 gene promoter is composed of multiple auxin response elements (AuxREs), and each AuxRE contributes incrementally to the strong auxin inducibility to the promoter.; PDB: 4EPL_A 4EQ4_B 4EWV_B 4EQL_B 4EPM_A. |
| >PTZ00237 acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=83.02 E-value=19 Score=34.26 Aligned_cols=79 Identities=10% Similarity=-0.018 Sum_probs=61.9
Q ss_pred eeeechHHHHHHHHHHHHHh---hCCCCCEEEEeccchhhhhhHHHHHHHHhCCeEEee-CCCCHHHHHHHHHhcCccee
Q 046637 200 GVICSHRGAYLNSLAAALFN---EMGLMPTYLWCVPMFHCNGWCLTWAVAAQGGTNVCQ-RTVNAKEIFDNITRHKVTHF 275 (301)
Q Consensus 200 ~v~~s~~~l~~~~~~~~~~~---~~~~~~~~l~~~p~~h~~g~~~~~~~l~~g~~~v~~-~~~~~~~~~~~i~~~~~t~~ 275 (301)
...+|...|...+..+...+ ++.++|++...+|..- -.+...++++..|+..+.. +.+.++.+...+++.+++.+
T Consensus 90 ~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GDrV~i~~~n~~-e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~l 168 (647)
T PTZ00237 90 TIKLTYYQLYEKVCEFSRVLLNLNISKNDNVLIYMANTL-EPLIAMLSCARIGATHCVLFDGYSVKSLIDRIETITPKLI 168 (647)
T ss_pred eEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCH-HHHHHHHHHHHhCcEEEeeCCCCCHHHHHHHHHhcCCCEE
Confidence 36799999987777666544 7889999999888643 2233467888889887766 57899999999999999999
Q ss_pred cCCh
Q 046637 276 GGAP 279 (301)
Q Consensus 276 ~~~P 279 (301)
++..
T Consensus 169 i~~~ 172 (647)
T PTZ00237 169 ITTN 172 (647)
T ss_pred EEcc
Confidence 8764
|
|
| >PLN02736 long-chain acyl-CoA synthetase | Back alignment and domain information |
|---|
Probab=82.49 E-value=32 Score=32.82 Aligned_cols=85 Identities=12% Similarity=-0.108 Sum_probs=64.4
Q ss_pred eeechHHHHHHHHHHHHH---hhCCCCCEEEEeccchhhhhhHHHHHHHHhCCeEEee-CCCCHHHHHHHHHhcCcceec
Q 046637 201 VICSHRGAYLNSLAAALF---NEMGLMPTYLWCVPMFHCNGWCLTWAVAAQGGTNVCQ-RTVNAKEIFDNITRHKVTHFG 276 (301)
Q Consensus 201 v~~s~~~l~~~~~~~~~~---~~~~~~~~~l~~~p~~h~~g~~~~~~~l~~g~~~v~~-~~~~~~~~~~~i~~~~~t~~~ 276 (301)
..+|+..+...+...... .++.++|++...+|-.--+ ....++++..|+..+.+ +...++.+...++..++..++
T Consensus 77 ~~lTy~el~~~v~~lA~~L~~~Gv~~gd~Vai~~~n~~e~-~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~l~ 155 (651)
T PLN02736 77 KWMTYGEAGTARTAIGSGLVQHGIPKGACVGLYFINRPEW-LIVDHACSAYSYVSVPLYDTLGPDAVKFIVNHAEVAAIF 155 (651)
T ss_pred EEEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHH-HHHHHHHHHcCCeEEEeecCCCHHHHHHHHhccCCCEEE
Confidence 457999988776665554 4688999988877753322 22357788889988866 467899999999999999999
Q ss_pred CChHHHHHHH
Q 046637 277 GAPTVLNMIA 286 (301)
Q Consensus 277 ~~P~~~~~l~ 286 (301)
+.+..+..+.
T Consensus 156 ~~~~~~~~~~ 165 (651)
T PLN02736 156 CVPQTLNTLL 165 (651)
T ss_pred ECHHHHHHHH
Confidence 9888776654
|
|
| >PLN03102 acyl-activating enzyme; Provisional | Back alignment and domain information |
|---|
Probab=82.16 E-value=19 Score=33.78 Aligned_cols=80 Identities=11% Similarity=-0.041 Sum_probs=61.7
Q ss_pred eechHHHHHHHHHHHHHh---hCCCCCEEEEeccchhhhhhH-HHHHHHHhCCeEEeeC-CCCHHHHHHHHHhcCcceec
Q 046637 202 ICSHRGAYLNSLAAALFN---EMGLMPTYLWCVPMFHCNGWC-LTWAVAAQGGTNVCQR-TVNAKEIFDNITRHKVTHFG 276 (301)
Q Consensus 202 ~~s~~~l~~~~~~~~~~~---~~~~~~~~l~~~p~~h~~g~~-~~~~~l~~g~~~v~~~-~~~~~~~~~~i~~~~~t~~~ 276 (301)
.+|...|...+......+ ++.++|++...+|-. ..+. ..++++..|+..+.+. ..+++.+...+++.+++.++
T Consensus 39 ~~Ty~eL~~~~~~~a~~L~~~Gl~~gd~Vai~~~n~--~e~~~~~la~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii 116 (579)
T PLN03102 39 RFTWPQTYDRCCRLAASLISLNITKNDVVSVLAPNT--PAMYEMHFAVPMAGAVLNPINTRLDATSIAAILRHAKPKILF 116 (579)
T ss_pred EEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCc--HHHHHHHHHHHhcCcEEeeccccCCHHHHHHHHhccCCeEEE
Confidence 689999987777666544 688999998888842 2333 4677888888888774 67899999999999999999
Q ss_pred CChHHHH
Q 046637 277 GAPTVLN 283 (301)
Q Consensus 277 ~~P~~~~ 283 (301)
+.+....
T Consensus 117 ~~~~~~~ 123 (579)
T PLN03102 117 VDRSFEP 123 (579)
T ss_pred EChhhHH
Confidence 8765543
|
|
| >PRK09274 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=82.05 E-value=19 Score=33.35 Aligned_cols=98 Identities=15% Similarity=-0.024 Sum_probs=67.0
Q ss_pred CCCCceEEEeccCCC-CCCCeeeechHHHHHHHHHHHHHh---hCCCCCEEEEeccchhhhhhHHHHHHHHhCCeEEeeC
Q 046637 181 DECDPIALNYTSGTT-SSPKGVICSHRGAYLNSLAAALFN---EMGLMPTYLWCVPMFHCNGWCLTWAVAAQGGTNVCQR 256 (301)
Q Consensus 181 ~~~~~~~i~~TSGtT-G~pK~v~~s~~~l~~~~~~~~~~~---~~~~~~~~l~~~p~~h~~g~~~~~~~l~~g~~~v~~~ 256 (301)
.++.++++....++. +..+...+|+..|...+......+ ++.++|++...++-.. .-....++++..|+..+.+.
T Consensus 19 ~p~~~a~~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~g~~~gd~V~~~~~n~~-~~~~~~la~~~~G~~~v~l~ 97 (552)
T PRK09274 19 RPDQLAVAVPGGRGADGKLAYDELSFAELDARSDAIAHGLNAAGIGRGMRAVLMVTPSL-EFFALTFALFKAGAVPVLVD 97 (552)
T ss_pred CCCcceEEeccCCCCccccccCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCcH-HHHHHHHHHHHcCeEEEEcC
Confidence 445666554332222 223344789999987777665544 6788999988887543 22334678888899888775
Q ss_pred -CCCHHHHHHHHHhcCcceecCCh
Q 046637 257 -TVNAKEIFDNITRHKVTHFGGAP 279 (301)
Q Consensus 257 -~~~~~~~~~~i~~~~~t~~~~~P 279 (301)
....+.+...+++.++..++..+
T Consensus 98 ~~~~~~~l~~~l~~~~~~~~i~~~ 121 (552)
T PRK09274 98 PGMGIKNLKQCLAEAQPDAFIGIP 121 (552)
T ss_pred CCccHHHHHHHHHhcCCCEEEecc
Confidence 56788888999999999888754
|
|
| >TIGR02188 Ac_CoA_lig_AcsA acetate--CoA ligase | Back alignment and domain information |
|---|
Probab=81.56 E-value=24 Score=33.33 Aligned_cols=97 Identities=11% Similarity=-0.063 Sum_probs=69.5
Q ss_pred CCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHh---hCCCCCEEEEeccchhhhhhHHHHHHHHhCCeEEee-
Q 046637 180 KDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFN---EMGLMPTYLWCVPMFHCNGWCLTWAVAAQGGTNVCQ- 255 (301)
Q Consensus 180 ~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~---~~~~~~~~l~~~p~~h~~g~~~~~~~l~~g~~~v~~- 255 (301)
..++.++++.. ...+| ....+|+..|...+......+ ++.++|++...+|..- -.....++++..|+..+.+
T Consensus 69 ~~p~~~Al~~~-~~~~~--~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~-e~~~~~lA~~~~Gav~v~i~ 144 (625)
T TIGR02188 69 ARPDKVAIIWE-GDEPG--EVRKITYRELHREVCRFANVLKSLGVKKGDRVAIYMPMIP-EAAIAMLACARIGAIHSVVF 144 (625)
T ss_pred cCCCCeEEEEE-cCCCC--ceEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCH-HHHHHHHHHHHhCCEEeccC
Confidence 35567776643 21122 246799999987776665544 6789999999888543 2233467888889888876
Q ss_pred CCCCHHHHHHHHHhcCcceecCChH
Q 046637 256 RTVNAKEIFDNITRHKVTHFGGAPT 280 (301)
Q Consensus 256 ~~~~~~~~~~~i~~~~~t~~~~~P~ 280 (301)
+.+.+..+...++..++..+++...
T Consensus 145 ~~~~~~~l~~~l~~~~~~~li~~~~ 169 (625)
T TIGR02188 145 GGFSAEALADRINDAGAKLVITADE 169 (625)
T ss_pred CCCCHHHHHHHHHhcCCCEEEEcCc
Confidence 4788999999999999999987654
|
This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by Pfam model pfam00501. |
| >PRK00174 acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=80.70 E-value=27 Score=33.13 Aligned_cols=96 Identities=11% Similarity=-0.069 Sum_probs=68.5
Q ss_pred CCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHh---hCCCCCEEEEeccchhhhhhHHHHHHHHhCCeEEee-C
Q 046637 181 DECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFN---EMGLMPTYLWCVPMFHCNGWCLTWAVAAQGGTNVCQ-R 256 (301)
Q Consensus 181 ~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~---~~~~~~~~l~~~p~~h~~g~~~~~~~l~~g~~~v~~-~ 256 (301)
.++.+|++... . .......+|+..|...+......+ ++.++|++...+|-.- -.+...++++..|+..+.+ +
T Consensus 80 ~p~~~Al~~~~--~-~~~~~~~lTy~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~-e~~~~~lA~~~~Gav~v~l~~ 155 (637)
T PRK00174 80 RGDKVAIIWEG--D-DPGDSRKITYRELHREVCRFANALKSLGVKKGDRVAIYMPMIP-EAAVAMLACARIGAVHSVVFG 155 (637)
T ss_pred CCCCeEEEEEC--C-CCCceEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCH-HHHHHHHHHHHcCCEEEecCC
Confidence 46677766421 1 112356799999988777666554 6788999888877533 2233467888889888877 4
Q ss_pred CCCHHHHHHHHHhcCcceecCChH
Q 046637 257 TVNAKEIFDNITRHKVTHFGGAPT 280 (301)
Q Consensus 257 ~~~~~~~~~~i~~~~~t~~~~~P~ 280 (301)
.+.++.+...++..++..+++...
T Consensus 156 ~~~~~~l~~~l~~~~~~~li~~~~ 179 (637)
T PRK00174 156 GFSAEALADRIIDAGAKLVITADE 179 (637)
T ss_pred CCCHHHHHHHHHhcCCcEEEEcCc
Confidence 678899999999999999987654
|
|
| >PRK13295 cyclohexanecarboxylate-CoA ligase; Reviewed | Back alignment and domain information |
|---|
Probab=80.25 E-value=23 Score=32.86 Aligned_cols=96 Identities=9% Similarity=-0.140 Sum_probs=67.4
Q ss_pred CCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHh---hCCCCCEEEEeccchhhhhhHHHHHHHHhCCeEEeeC-
Q 046637 181 DECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFN---EMGLMPTYLWCVPMFHCNGWCLTWAVAAQGGTNVCQR- 256 (301)
Q Consensus 181 ~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~---~~~~~~~~l~~~p~~h~~g~~~~~~~l~~g~~~v~~~- 256 (301)
.++.++++..- ++.++...+|+..+...+......+ ++.+++++...+|-...+ ....++++..|+..+...
T Consensus 37 ~p~~~A~~~~~---~~~~~~~~~Ty~el~~~~~~~a~~L~~~g~~~g~~Val~~~n~~e~-~~~~la~~~~G~~~vpl~~ 112 (547)
T PRK13295 37 CPDKTAVTAVR---LGTGAPRRFTYRELAALVDRVAVGLARLGVGRGDVVSCQLPNWWEF-TVLYLACSRIGAVLNPLMP 112 (547)
T ss_pred CCCceEEEecC---CCccccceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCChHH-HHHHHHHHhcCcEEecccc
Confidence 34566665432 2334446789999987766655544 678899988888754433 334678888899888764
Q ss_pred CCCHHHHHHHHHhcCcceecCChH
Q 046637 257 TVNAKEIFDNITRHKVTHFGGAPT 280 (301)
Q Consensus 257 ~~~~~~~~~~i~~~~~t~~~~~P~ 280 (301)
...++.+...++..++..+++.+.
T Consensus 113 ~~~~~~l~~~l~~~~~~~li~~~~ 136 (547)
T PRK13295 113 IFRERELSFMLKHAESKVLVVPKT 136 (547)
T ss_pred ccCHHHHHHHHHhcCceEEEEecc
Confidence 567888999999999999877553
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 301 | ||||
| 1ult_A | 541 | Crystal Structure Of Tt0168 From Thermus Thermophil | 3e-27 | ||
| 3r44_A | 517 | Mycobacterium Tuberculosis Fatty Acyl Coa Synthetas | 1e-14 | ||
| 3t5b_A | 396 | Crystal Structure Of N-Terminal Domain Of Facl13 Fr | 1e-14 | ||
| 3ivr_A | 509 | Crystal Structure Of Putative Long-Chain-Fatty-Acid | 5e-11 | ||
| 3g7s_A | 549 | Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Li | 2e-08 | ||
| 1mdb_A | 539 | Crystal Structure Of Dhbe In Complex With Dhb-adeny | 4e-08 | ||
| 3a9u_A | 536 | Crystal Structures And Enzymatic Mechanisms Of A Po | 4e-08 | ||
| 1md9_A | 539 | Crystal Structure Of Dhbe In Complex With Dhb And A | 2e-07 | ||
| 1t5d_X | 504 | 4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO 4-Chl | 1e-06 | ||
| 3dlp_X | 504 | 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P, | 1e-06 | ||
| 2qvx_X | 504 | 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATIO | 1e-06 | ||
| 2qvz_X | 504 | 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATIO | 1e-06 | ||
| 3cw8_X | 504 | 4-chlorobenzoyl-coa Ligase/synthetase, Bound To 4cb | 1e-06 | ||
| 1t5h_X | 504 | 4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED, SE | 3e-06 | ||
| 3tsy_A | 979 | 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Pr | 8e-06 | ||
| 2v7b_A | 529 | Crystal Structures Of A Benzoate Coa Ligase From Bu | 1e-05 | ||
| 1ry2_A | 663 | Crystal Structure Of Yeast Acetyl-Coenzyme A Synthe | 1e-05 | ||
| 4fuq_A | 503 | Crystal Structure Of Apo Matb From Rhodopseudomonas | 3e-05 | ||
| 1pg3_A | 652 | Acetyl Coa Synthetase, Acetylated On Lys609 Length | 5e-05 | ||
| 2p2j_A | 652 | Acetyl-Coa Synthetase, K609a Mutation Length = 652 | 5e-05 | ||
| 2p2m_A | 652 | Acetyl-Coa Synthetase, R194a Mutation Length = 652 | 5e-05 | ||
| 2p20_A | 652 | Acetyl-Coa Synthetase, R584a Mutation Length = 652 | 5e-05 | ||
| 2p2f_A | 652 | Acetyl-coa Synthetase, Wild-type With Acetate, Amp, | 6e-05 | ||
| 2p2q_A | 652 | Acetyl-Coa Synthetase, R584e Mutation Length = 652 | 6e-05 | ||
| 2p2b_A | 652 | Acetyl-coa Synthetase, V386a Mutation Length = 652 | 6e-05 | ||
| 3ipl_A | 501 | Crystal Structure Of O-Succinylbenzoic Acid-Coa Lig | 4e-04 |
| >pdb|1ULT|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8 Length = 541 | Back alignment and structure |
|
| >pdb|3R44|A Chain A, Mycobacterium Tuberculosis Fatty Acyl Coa Synthetase Length = 517 | Back alignment and structure |
|
| >pdb|3T5B|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From Mycobacterium Tuberculosis Length = 396 | Back alignment and structure |
|
| >pdb|3IVR|A Chain A, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa Ligase From Rhodopseudomonas Palustris Cga009 Length = 509 | Back alignment and structure |
|
| >pdb|3G7S|A Chain A, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase (Fadd1) From Archaeoglobus Fulgidus Length = 549 | Back alignment and structure |
|
| >pdb|1MDB|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb-adenylate Length = 539 | Back alignment and structure |
|
| >pdb|3A9U|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus Tomentosa 4- Coumarate--Coa Ligase Length = 536 | Back alignment and structure |
|
| >pdb|1MD9|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb And Amp Length = 539 | Back alignment and structure |
|
| >pdb|1T5D|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO 4-Chlorobenzoate Length = 504 | Back alignment and structure |
|
| >pdb|3DLP|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P, BOUND To 4cb Length = 504 | Back alignment and structure |
|
| >pdb|2QVX|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION, BOUND TO 3- Chlorobenzoate Length = 504 | Back alignment and structure |
|
| >pdb|2QVZ|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATION, BOUND TO 3- Chlorobenzoate Length = 504 | Back alignment and structure |
|
| >pdb|3CW8|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, Bound To 4cba-adenylate Length = 504 | Back alignment and structure |
|
| >pdb|1T5H|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED, SELENOMETHIONINE Length = 504 | Back alignment and structure |
|
| >pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein Length = 979 | Back alignment and structure |
|
| >pdb|2V7B|A Chain A, Crystal Structures Of A Benzoate Coa Ligase From Burkholderia Xenovorans Lb400 Length = 529 | Back alignment and structure |
|
| >pdb|1RY2|A Chain A, Crystal Structure Of Yeast Acetyl-Coenzyme A Synthetase In Complex With Amp Length = 663 | Back alignment and structure |
|
| >pdb|4FUQ|A Chain A, Crystal Structure Of Apo Matb From Rhodopseudomonas Palustris Length = 503 | Back alignment and structure |
|
| >pdb|1PG3|A Chain A, Acetyl Coa Synthetase, Acetylated On Lys609 Length = 652 | Back alignment and structure |
|
| >pdb|2P2J|A Chain A, Acetyl-Coa Synthetase, K609a Mutation Length = 652 | Back alignment and structure |
|
| >pdb|2P2M|A Chain A, Acetyl-Coa Synthetase, R194a Mutation Length = 652 | Back alignment and structure |
|
| >pdb|2P20|A Chain A, Acetyl-Coa Synthetase, R584a Mutation Length = 652 | Back alignment and structure |
|
| >pdb|2P2F|A Chain A, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And Coa Bound Length = 652 | Back alignment and structure |
|
| >pdb|2P2Q|A Chain A, Acetyl-Coa Synthetase, R584e Mutation Length = 652 | Back alignment and structure |
|
| >pdb|2P2B|A Chain A, Acetyl-coa Synthetase, V386a Mutation Length = 652 | Back alignment and structure |
|
| >pdb|3IPL|A Chain A, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase From Staphylococcus Aureus Subsp. Aureus Mu50 Length = 501 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A* Length = 541 | Back alignment and structure |
|---|
Score = 350 bits (900), Expect = e-118
Identities = 90/296 (30%), Positives = 125/296 (42%), Gaps = 23/296 (7%)
Query: 1 MEGMIRCSANYVPLTPISFLERSAVVYRDRPSVVYGD----VQYTWKETHQRCVKLASGL 56
M + L FLER+A ++ + V + T+ E +QR +L GL
Sbjct: 6 MNAFPS-TMMDEELNLWDFLERAAALFGRKEVVSRLHTGEVHRTTYAEVYQRARRLMGGL 64
Query: 57 AHLGISPGDVVAALAPNVPAMYELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIF 116
LG+ GD VA L N E +F VP GAVL T N R ++ +L H+E K++
Sbjct: 65 RALGVGVGDRVATLGFNHFRHLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLL 124
Query: 117 VDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVASSSGNLEYESLLAIGKLREV 176
D LLP+ + L + V++ E G L YE L
Sbjct: 125 FDPNLLPLVEAIRGELK----TVQHFVVMDEKAPE--------GYLAYEEALGEE---AD 169
Query: 177 RRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGL--MPTYLWCVPMF 234
E + YT+GTT PKGV+ SHR L+SLAA+L + L L VPMF
Sbjct: 170 PVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMF 229
Query: 235 HCNGWCLTWAVAAQGGTNVC-QRTVNAKEIFDNITRHKVTHFGGAPTVLNMIANAP 289
H N WCL +A G V ++ + + VT G PTV +A+
Sbjct: 230 HVNAWCLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYL 285
|
| >3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp} Length = 501 | Back alignment and structure |
|---|
Score = 230 bits (590), Expect = 1e-72
Identities = 48/280 (17%), Positives = 93/280 (33%), Gaps = 7/280 (2%)
Query: 18 SFLERSAVVYRDRPSVVYGDVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAM 77
+L + A ++ G YT++ + LA L V N
Sbjct: 5 FWLYKQAQQNGHHIAITDGQESYTYQNLYCEASLLA---KRLKAYQQSRVGLYIDNSIQS 61
Query: 78 YELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSA 137
L +A + +NTR ++ +R + ++IF L +I+S
Sbjct: 62 IILIHACWLANIEIAMINTRLTPNEMTNQMRSIDVQLIFCTLPLELRGF---QIVSLDDI 118
Query: 138 KLPLLVLVPECGEPVSTVASSSGNLEYESLLAIGKLREVRRPKDECDPIALNYTSGTTSS 197
+ + G +T+ + + + D ++ +TSGTT
Sbjct: 119 EFAGRDITTN-GLLDNTMGIQYDTSNETVVPKESPSNILNTSFNLDDIASIMFTSGTTGP 177
Query: 198 PKGVICSHRGAYLNSLAAALFNEMGLMPTYLWCVPMFHCNGWCLTWAVAAQGGTNVCQRT 257
K V + R Y +++ +L +P++H +G + +G T
Sbjct: 178 QKAVPQTFRNHYASAIGCKESLGFDRDTNWLSVLPIYHISGLSVLLRAVIEGFTVRIVDK 237
Query: 258 VNAKEIFDNITRHKVTHFGGAPTVLNMIANAPPVFENRFR 297
NA++I I ++TH P LN + +
Sbjct: 238 FNAEQILTMIKNERITHISLVPQTLNWLMQQGLHEPYNLQ 277
|
| >3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} Length = 509 | Back alignment and structure |
|---|
Score = 229 bits (586), Expect = 7e-72
Identities = 57/276 (20%), Positives = 100/276 (36%), Gaps = 15/276 (5%)
Query: 14 LTPISFLERSAVVYRDRPSVVYGDVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPN 73
T R+A ++ DR + + V+ T ++ R +LASGL G+ GD VA L+ N
Sbjct: 6 FTLADVYRRNAALFPDRTAFMVDGVRLTHRDYLARAERLASGLLRDGVHTGDRVAILSQN 65
Query: 74 VPAMYELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILS 133
M EL V + GA+L +N R ++ ++ +L ++ I G
Sbjct: 66 CSEMIELIGAVALIGAILLPVNYRLNADEIAFVLGDGAPSVVVAGTDYRDIVAGV----- 120
Query: 134 KTSAKLPLLVLVPECGEPVSTVASSSGNLEYESLLAIGKLREVRRPKDECDPIALNYTSG 193
L + G+ S ++ L + D + +T+
Sbjct: 121 --LPSLGGVKKAYAIGDG------SGPFAPFKDLASDTPFSAPEFGAA--DGFVIIHTAA 170
Query: 194 TTSSPKGVICSHRGAYLNSLAAALFNEMGLMPTYLWCVPMFHCNGWCLTWAVAAQGGTNV 253
P+G + S + + + L +P+FH G L + GG +V
Sbjct: 171 VGGRPRGALISQGNLLIAQSSLVDAWRLTEADVNLGMLPLFHVTGLGLMLTLQQAGGASV 230
Query: 254 CQRTVNAKEIFDNITRHKVTHFGGAPTVLNMIANAP 289
+ + +I HKVT +L I +
Sbjct: 231 IAAKFDPAQAARDIEAHKVTVMAEFAPMLGNILDQA 266
|
| >3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A Length = 517 | Back alignment and structure |
|---|
Score = 227 bits (581), Expect = 4e-71
Identities = 68/274 (24%), Positives = 104/274 (37%), Gaps = 19/274 (6%)
Query: 18 SFLERSAVVYRDRPSVV--YGDVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVP 75
L + A V + V DV+ T+ + + + A L LGI+ GD VA L PN
Sbjct: 20 WMLRQRATVSPRLQAYVEPSTDVRMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSV 79
Query: 76 AMYELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKT 135
L +G GAV +NTR + VS +L S +K++ P+
Sbjct: 80 EFCCLFYGAAKLGAVAVPINTRLAAPEVSFILSDSGSKVVIYGAPSAPVIDAIRAQA--- 136
Query: 136 SAKLPLLVLVPECGEPVSTVASSSGNLEYESLLAIGKLREVRRPKDECDPIALNYTSGTT 195
+P TV G L E D + + YTSGTT
Sbjct: 137 --------------DPPGTVTDWIGADSLAERLRSAAADEPAVECGGDDNLFIMYTSGTT 182
Query: 196 SSPKGVICSHRGAYLNSLAAALFNEMGLMPTYLWCVPMFHCNGWCLTWAVAAQGGTNVCQ 255
PKGV+ +H + + + A ++ L +PMFH A +G T +
Sbjct: 183 GHPKGVVHTHESVHSAASSWASTIDVRYRDRLLLPLPMFHVAALTTVIFSAMRGVTLISM 242
Query: 256 RTVNAKEIFDNITRHKVTHFGGAPTVLNMIANAP 289
+A +++ I +V G P +LN + P
Sbjct: 243 PQFDATKVWSLIVEERVCIGGAVPAILNFMRQVP 276
|
| >1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X* Length = 504 | Back alignment and structure |
|---|
Score = 198 bits (507), Expect = 3e-60
Identities = 58/285 (20%), Positives = 98/285 (34%), Gaps = 25/285 (8%)
Query: 18 SFLERSAVVYRDRPSVVYGD--VQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVP 75
L R+A D ++ ++ T E R +A+ L G+ P VA +APN
Sbjct: 6 EMLRRAATRAPDHCALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSA 65
Query: 76 AMYELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKT 135
+ + GAV LN R SA ++ L++ E +
Sbjct: 66 DVVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIA----------------- 108
Query: 136 SAKLPLLVLVPECGEPVSTVASSSGNLEYESLLAIGKLREVRRPKDECDPIALNYTSGTT 195
+ + + G + + E + + +R P + YTSGTT
Sbjct: 109 -VGRQVADAIFQSGSGARIIFLGDLVRDGEPYSYGPPIEDPQREPA--QPAFIFYTSGTT 165
Query: 196 SSPKGVICSHRGAYLNSLAAALFNEMGLMP--TYLWCVPMFHCNGW-CLTWAVAAQGGTN 252
PK I R A L + + L +P++H G+ + A A GT
Sbjct: 166 GLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTY 225
Query: 253 VCQRTVNAKEIFDNITRHKVTHFGGAPTVLNMIANAPPVFENRFR 297
V + + + +VT PT L+ +A A + +
Sbjct: 226 VVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLK 270
|
| >3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli} Length = 617 | Back alignment and structure |
|---|
Score = 182 bits (464), Expect = 3e-53
Identities = 52/276 (18%), Positives = 91/276 (32%), Gaps = 18/276 (6%)
Query: 18 SFLERSAVVYRDRPSVVYGDVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAM 77
L R A D +V+ G+ Q +++E +Q LA L GI PG+ NV +
Sbjct: 31 DILTRHA--ASDSIAVIDGERQLSYRELNQAADNLACSLRRQGIKPGETALVQLGNVAEL 88
Query: 78 YELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSA 137
Y F + G H + ++ E ++ D Q + F L+
Sbjct: 89 YITFFALLKLGVAPVLALFSHQRSELNAYASQIEPALLIADRQHALFSGDDF--LNTFVT 146
Query: 138 KLPLLVLVPECGEPVSTVASSSGNLEYESLLAIGKLREVRRPKDECDPIALNYTSGTTSS 197
+ + +V + G + + P + + GTT +
Sbjct: 147 EHSSIRVVQLLNDS--------GEHNLQDAINHPAEDFTATPSPADEVAYFQLSGGTTGT 198
Query: 198 PKGVICSHRGAYLNSLAAALFNEMGLMP--TYLWCVPMFHCNGWCLTWAVAA--QGGTNV 253
PK + +H Y + + YL +P H ++ GGT V
Sbjct: 199 PKLIPRTHNDYYYSVRRSV--EICQFTQQTRYLCAIPAAHNYAMSSPGSLGVFLAGGTVV 256
Query: 254 CQRTVNAKEIFDNITRHKVTHFGGAPTVLNMIANAP 289
+A F I +H+V P +++ A
Sbjct: 257 LAADPSATLCFPLIEKHQVNVTALVPPAVSLWLQAL 292
|
| >1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A Length = 539 | Back alignment and structure |
|---|
Score = 178 bits (454), Expect = 3e-52
Identities = 59/283 (20%), Positives = 99/283 (34%), Gaps = 32/283 (11%)
Query: 18 SFLERSAVVYRDRPSVVYGDVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAM 77
L A Y DR ++ G+ ++++E R +LA+G LGI D V PN+
Sbjct: 29 DLLRDRAAKYGDRIAITCGNTHWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEF 88
Query: 78 YELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFV-------DYQLLPIAQGAFE 130
+E+ F + GA+ H S+ ++ +EA + DY+
Sbjct: 89 FEVIFALFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYR---------S 139
Query: 131 ILSKTSAKLPLLVLVPECGEPVSTVASSSGNLEYESLLAIGKLREVRRPKDECDPIALNY 190
+ + +KLP L + GE E+ L + D L
Sbjct: 140 LARQVQSKLPTLKNIIVAGEA----------EEFLPLEDLHTEPVKLPEVKSSDVAFLQL 189
Query: 191 TSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMP--TYLWCVPMFHCNGWCLTWAVAA- 247
+ G+T K + +H + + L YL +PM H +
Sbjct: 190 SGGSTGLSKLIPRTHDDYIYSLKRSV--EVCWLDHSTVYLAALPMAHNYPLSSPGVLGVL 247
Query: 248 -QGGTNVCQRTVNAKEIFDNITRHKVTHFGGAPTVLNMIANAP 289
GG V + + + F I R KVT P + + +A
Sbjct: 248 YAGGRVVLSPSPSPDDAFPLIEREKVTITALVPPLAMVWMDAA 290
|
| >3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} PDB: 3o82_A* 3o84_A* Length = 544 | Back alignment and structure |
|---|
Score = 176 bits (450), Expect = 1e-51
Identities = 52/276 (18%), Positives = 93/276 (33%), Gaps = 14/276 (5%)
Query: 18 SFLERSAVVYRDRPSVVYGDVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAM 77
L + +++ G+ Q ++ E + LA+ LA G+ GD PNV
Sbjct: 34 RILTVGVQSHPHSLAIICGERQLSYIELDRLSTNLATRLAEKGLGKGDTALVQLPNVAEF 93
Query: 78 YELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSA 137
Y + F + AG V+ H ++ ++ + K++ Q + F +
Sbjct: 94 YIVFFALLKAGVVVLNALYSHRQYELNAFIKQIQPKLLIGSRQHEVFSNNQF--IDSLHD 151
Query: 138 KLPLLVLVPECGEPVSTVASSSGNLEYESLLAIGKLREVRRPKDECDPIALNYTSGTTSS 197
++ A+ G L++ A + P D + + G+T +
Sbjct: 152 VNLSPEIILMLNHQ----ATDFGLLDWIETPAETFVDFSSTPAD--EVAFFQLSGGSTGT 205
Query: 198 PKGVICSHRGAYLNSLAAALFNEMGLMP--TYLWCVPMFHCNGWCLTWAVAA--QGGTNV 253
PK + +H + A+A GL L +P H A+ GG V
Sbjct: 206 PKLIPRTHNDYDYSVRASA--EICGLNSNTRLLCALPAPHNFMLSSPGALGVLHAGGCVV 263
Query: 254 CQRTVNAKEIFDNITRHKVTHFGGAPTVLNMIANAP 289
F I RH+V P+ + M
Sbjct: 264 MAPNPEPLNCFSIIQRHQVNMASLVPSAVIMWLEKA 299
|
| >4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* Length = 503 | Back alignment and structure |
|---|
Score = 164 bits (418), Expect = 2e-47
Identities = 53/270 (19%), Positives = 90/270 (33%), Gaps = 21/270 (7%)
Query: 22 RSAVVYRDRPSVVYGD-VQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYEL 80
+ + ++ + ++ E R ++A+ L G+ GD VAA L
Sbjct: 10 FDKLDDPHKLAIETAAGDKISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVL 69
Query: 81 HFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLP 140
+ AG V LNT + + + +E KI+ D
Sbjct: 70 YLATVRAGGVYLPLNTAYTLHELDYFITDAEPKIVVCDPSKRDGIAA------------- 116
Query: 141 LLVLVPECGEPVSTVASSSGNLEYESLLAIGKLREVRRPKDECDPIALNYTSGTTSSPKG 200
+ + G V T+ G A + D A+ YTSGTT KG
Sbjct: 117 ---IAAKVGATVETLG-PDGRGSLTDAAAGASEAFATIDRGADDLAAILYTSGTTGRSKG 172
Query: 201 VICSHRGAYLNSLAAALFNEMGLMPTYLWCVPMFHCNGW-CLTWAVAAQGGTNVCQRTVN 259
+ SH NSL + + +P++H +G + G+ + +
Sbjct: 173 AMLSHDNLASNSLTLVDYWRFTPDDVLIHALPIYHTHGLFVASNVTLFARGSMIFLPKFD 232
Query: 260 AKEIFDNITRHKVTHFGGAPTVLNMIANAP 289
+I D + R T G PT + +P
Sbjct: 233 PDKILDLMAR--ATVLMGVPTFYTRLLQSP 260
|
| >3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304} Length = 549 | Back alignment and structure |
|---|
Score = 164 bits (418), Expect = 4e-47
Identities = 59/295 (20%), Positives = 111/295 (37%), Gaps = 28/295 (9%)
Query: 11 YVPLTPI-SFLERSAVVYRDRPSVVYGDVQ--------YTWKETHQRCVKLASGLAHLGI 61
Y P + ++ +A + ++ +++ + + + E + KLASG++ G+
Sbjct: 15 YYPKISLADRIDAAAEKFGEKTAIISAEPKFPSEFPESMNFLEICEVTKKLASGISRKGV 74
Query: 62 SPGDVVAALAPNVPAMYELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQL 121
G+ V PN + + A +N + S + +L SEA + V L
Sbjct: 75 RKGEHVGVCIPNSIDYVMTIYALWRVAATPVPINPMYKSFELEHILNDSEATTLVVHSML 134
Query: 122 LPIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVASSSGNLEYESLLAIGKLREVRRPKD 181
+ E + + +V ++ G +
Sbjct: 135 YENFKPVLE-----KTGVERVFVVGGEVNS------------LSEVMDSGSEDFENVKVN 177
Query: 182 ECDPIA-LNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPTYLWCVPMFHCNGWC 240
+ +A + YT GTT PKGV+ +H N+L A+ + M T + C+PMFH +
Sbjct: 178 PEEDVALIPYTGGTTGMPKGVMLTHFNLAANALQLAVATGLSHMDTIVGCMPMFHSAEFG 237
Query: 241 LTWAVAAQGGTNVCQRTVNAKEIFDNITRHKVTHFGGAPTVLNMIANAP-PVFEN 294
L + G V N + + +NI ++K T P LN++ N +
Sbjct: 238 LVNLMVTVGNEYVVMGMFNQEMLAENIEKYKGTFSWAVPPALNVLVNTLESSNKT 292
|
| >2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A* Length = 548 | Back alignment and structure |
|---|
Score = 161 bits (410), Expect = 6e-46
Identities = 40/288 (13%), Positives = 85/288 (29%), Gaps = 12/288 (4%)
Query: 12 VPLTPI-SFLERSAVVYRDRPSVVYGDV----QYTWKETHQRCVKLASGLAHLGISPGDV 66
+ + L + Y ++ + + Y++ E ++ L L + G+
Sbjct: 20 IEEGSAGTQLRKYMERYAKLGAIAFTNAVTGVDYSYAEYLEKSCCLGKALQNYGLVVDGR 79
Query: 67 VAALAPNVPAMYELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQ 126
+A + N + G + N + + L S+ I+F + L
Sbjct: 80 IALCSENCEEFFIPVIAGLFIGVGVAPTNEIYTLRELVHSLGISKPTIVFSSKKGLDKVI 139
Query: 127 GAFEILSKTSAKLPLLVLVPECGEPVSTVASSSGNLEYESLLAIGKLREVRRPKDECDPI 186
+ + +++L + + + V + E
Sbjct: 140 ---TVQKTVTTIKTIVILDSKVDYRGYQCLDTFIKRNTPPGFQASSFKTVEVDRKE-QVA 195
Query: 187 ALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMP---TYLWCVPMFHCNGWCLTW 243
+ +SG+T PKGV +H A + L VP H G T
Sbjct: 196 LIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHHGFGMFTTL 255
Query: 244 AVAAQGGTNVCQRTVNAKEIFDNITRHKVTHFGGAPTVLNMIANAPPV 291
G V + + + +K T PT+ ++ + +
Sbjct: 256 GYLICGFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLFAILNKSELL 303
|
| >3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A* Length = 536 | Back alignment and structure |
|---|
Score = 159 bits (404), Expect = 4e-45
Identities = 57/282 (20%), Positives = 105/282 (37%), Gaps = 24/282 (8%)
Query: 18 SFLERSAVVYRDRPSVVYG--DVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVP 75
S++ + + +P ++ G YT+ + ++ASGL +GI GDV+ P+ P
Sbjct: 26 SYVLENLSNHSSKPCLINGANGDVYTYADVELTARRVASGLNKIGIQQGDVIMLFLPSSP 85
Query: 76 AMYELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKT 135
G GA++ N A ++ + S AK++ +
Sbjct: 86 EFVLAFLGASHRGAIITAANPFSTPAELAKHAKASRAKLLITQACYYEKVKDFAR----- 140
Query: 136 SAKLPLLVLVPECGEPVSTVASSSGNLEYESLLAIGKLREVRRPKDECDPIALNYTSGTT 195
+ + ++ + P G L + L + + D +AL Y+SGTT
Sbjct: 141 ESDVKVMCV---DSAP-------DGCLHFSELTQADENEAPQVDISPDDVVALPYSSGTT 190
Query: 196 SSPKGVICSHRGAYLNSLAAALFNEMGLMP----TYLWCVPMFHCNG--WCLTWAVAAQG 249
PKGV+ +H+G + + L L +PMFH + + G
Sbjct: 191 GLPKGVMLTHKGLITSVAQQVDGDNPNLYFHSEDVILCVLPMFHIYALNSIMLCGL-RVG 249
Query: 250 GTNVCQRTVNAKEIFDNITRHKVTHFGGAPTVLNMIANAPPV 291
+ + I ++KV+ P V+ IA +P +
Sbjct: 250 APILIMPKFEIGSLLGLIEKYKVSIAPVVPPVMMSIAKSPDL 291
|
| >3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} PDB: 1ba3_A 1lci_A* 3ies_A* 3iep_A* 3ier_A* 3qya_A Length = 550 | Back alignment and structure |
|---|
Score = 158 bits (402), Expect = 1e-44
Identities = 46/290 (15%), Positives = 92/290 (31%), Gaps = 15/290 (5%)
Query: 12 VPLTPI-SFLERSAVVYRDRPSVV-----YGDVQYTWKETHQRCVKLASGLAHLGISPGD 65
+ L ++ Y P + + +V T+ E + V+LA + G++
Sbjct: 17 LEDGTAGEQLHKAMKRYALVPGTIAFTDAHIEVNITYAEYFEMSVRLAEAMKRYGLNTNH 76
Query: 66 VVAALAPNVPAMYELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIA 125
+ + N + G G + N ++ + + S+ ++FV + L
Sbjct: 77 RIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKI 136
Query: 126 QGAFEILSKTSAKLPLLVLVPECGEPVSTVASSSGNLEYESLLAIGKLREVRRPKDECDP 185
+ + +++ + S + + V D
Sbjct: 137 LNVQK-----KLPIIQKIIIMDSKTDYQGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKT 191
Query: 186 IA-LNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMP---TYLWCVPMFHCNGWCL 241
IA + +SG+T PKGV HR A + A + L VP H G
Sbjct: 192 IALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFHHGFGMFT 251
Query: 242 TWAVAAQGGTNVCQRTVNAKEIFDNITRHKVTHFGGAPTVLNMIANAPPV 291
T G V + ++ +K+ PT+ + A + +
Sbjct: 252 TLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLI 301
|
| >2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans} Length = 529 | Back alignment and structure |
|---|
Score = 157 bits (400), Expect = 1e-44
Identities = 60/278 (21%), Positives = 97/278 (34%), Gaps = 18/278 (6%)
Query: 18 SFLERSAVVYRDRPSVVYGDVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAM 77
++L R + + + T+ E +R + AS L LG+ P + + + + A+
Sbjct: 27 AYLFRLNETRAGKTAYIDDTGSTTYGELEERARRFASALRTLGVHPEERILLVMLDTVAL 86
Query: 78 YELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSA 137
G AG V NT A +L HS A+ + L+ A E
Sbjct: 87 PVAFLGALYAGVVPVVANTLLTPADYVYMLTHSHARAVIASGALVQNVTQALESAE--HD 144
Query: 138 KLPLLVLVPECGEPVSTVASSSGNLEYESLLAIG--KLREVRRPKDECDPIALNYTSGTT 195
L+V P EP +E L+ + D D Y+SG+T
Sbjct: 145 GCQLIVSQPRESEP-------RLAPLFEELIDAAAPAAKAAATGCD--DIAFWLYSSGST 195
Query: 196 SSPKGVICSHRGAYLNSLAAALFNEMGLMP--TYLWCVPMFHCNG-WCLTWAVAAQGGTN 252
PKG + +H Y + A +G+ +F G + G T
Sbjct: 196 GKPKGTVHTHANLYWTAELYAKPI-LGIAENDVVFSAAKLFFAYGLGNGLTFPLSVGATA 254
Query: 253 VCQRT-VNAKEIFDNITRHKVTHFGGAPTVLNMIANAP 289
+ A IF + H+ T F G PT+ + +P
Sbjct: 255 ILMAERPTADAIFARLVEHRPTVFYGVPTLYANMLVSP 292
|
| >3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana} Length = 979 | Back alignment and structure |
|---|
Score = 149 bits (377), Expect = 2e-40
Identities = 57/293 (19%), Positives = 103/293 (35%), Gaps = 24/293 (8%)
Query: 10 NYVPLTPISFLERSAVVYRDRPSVVYG--DVQYTWKETHQRCVKLASGLAHLGISPGDVV 67
N++ L ++ ++ + +P ++ G YT+ + H ++A+ LG++ DVV
Sbjct: 59 NHLSLH--DYIFQNISEFATKPCLINGPTGHVYTYSDVHVISRQIAANFHKLGVNQNDVV 116
Query: 68 AALAPNVPAMYELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQG 127
L PN P GA N A ++ + S K+I + + + +
Sbjct: 117 MLLLPNCPEFVLSFLAASFRGATATAANPFFTPAEIAKQAKASNTKLIITEARYVDKIKP 176
Query: 128 AFEILSKTSAKLPLLVLVPECGEPVSTVASSSGNLEYESLLAIGKLREVRRPKDECDP-- 185
+ ++ + P G L + L E P
Sbjct: 177 LQN-----DDGVVIVCIDDNESVP-----IPEGCLRFTELTQSTTEASEVIDSVEISPDD 226
Query: 186 -IALNYTSGTTSSPKGVICSHRG--AYLNSLAAALFNEMGLMP--TYLWCVPMFHCNG-- 238
+AL Y+SGTT PKGV+ +H+G + + L +PMFH
Sbjct: 227 VVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMFHIYALN 286
Query: 239 WCLTWAVAAQGGTNVCQRTVNAKEIFDNITRHKVTHFGGAPTVLNMIANAPPV 291
+ + G + + + I R KVT P ++ IA +
Sbjct: 287 SIMLCGL-RVGAAILIMPKFEINLLLELIQRCKVTVAPMVPPIVLAIAKSSET 338
|
| >3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A* Length = 505 | Back alignment and structure |
|---|
Score = 145 bits (368), Expect = 4e-40
Identities = 48/274 (17%), Positives = 82/274 (29%), Gaps = 39/274 (14%)
Query: 18 SFLERSAVVYRDRPSVVYGDVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAM 77
+ DRP++ +G+ T+ E A + VA A
Sbjct: 27 ALSPAPTGAPADRPALRFGERSLTYAELAAAAGATAGRIG-----GAGRVAVWATPAMET 81
Query: 78 YELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSA 137
+AG LN + ++ +L S ++
Sbjct: 82 GVAVVAALLAGVAAVPLNPKSGDKELAHILSDSAPSLVLAP------------------- 122
Query: 138 KLPLLVLVPECGEPVSTVASSSGNLEYESLLAIGKLREVRRPKDECDPIALNYTSGTTSS 197
P + + + G LE + + D+ DP + YTSGTT
Sbjct: 123 -------------PDAELPPALGALERVDVDVRARGAVPEDGADDGDPALVVYTSGTTGP 169
Query: 198 PKGVICSHRGAYLNSLAAALFNEMGLMPTYLWCVPMFHCNGW-CLTWAVAAQGGTNVCQR 256
PKG + R A A + + +P+FH +G +GG+
Sbjct: 170 PKGAVIPRRALATTLDALADAWQWTGEDVLVQGLPLFHVHGLVLGILGPLRRGGSVRHLG 229
Query: 257 TVNAKEIFDNITRHKVTHFGGAPTVLNMIANAPP 290
+ + + T G PT+ + IA P
Sbjct: 230 RFSTEGAAREL-NDGATMLFGVPTMYHRIAETLP 262
|
| >3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A* Length = 570 | Back alignment and structure |
|---|
Score = 105 bits (264), Expect = 1e-25
Identities = 51/286 (17%), Positives = 98/286 (34%), Gaps = 43/286 (15%)
Query: 21 ERSAVVYRDRPSVVYGD-VQYTWKETHQRCVKLASGLA-HLGISPGDVVAALAPNVPAMY 78
A+ + + G + + ++E + + A+ L+ G+ GD VA + P VP +
Sbjct: 58 PSPALWWVNGK----GKELMWNFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVPEWW 113
Query: 79 ELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAK 138
+ G AG + + S + L+ S+AK I +++ +++
Sbjct: 114 LVILGCIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAGDEVIQEVDTV-------ASE 166
Query: 139 LPLLVLVPECGEPVSTVASSSGNLEYESLLAIGKLREVRRPKDECDPIALNYTSGTTSSP 198
P L + E S G L ++ LL + A+ +TSGT+ P
Sbjct: 167 CPSLRIKLLVSE-----KSCDGWLNFKKLLNEASTTHHCVETGSQEASAIYFTSGTSGLP 221
Query: 199 KGVICSHRGAYLNSLAAALFNEMGLMPTYLWCVPMFHCNGWCLT---WAVAA-------- 247
K S+ L + A + GL + + W ++ W +
Sbjct: 222 KMAEHSYSSLGLKAKMDAGW--TGLQASDIM---------WTISDTGWILNILCSLMEPW 270
Query: 248 -QGGTNVCQRT--VNAKEIFDNITRHKVTHFGGAPTVLNMIANAPP 290
G + I ++ + + GAP V M+
Sbjct: 271 ALGACTFVHLLPKFDPLVILKTLSSYPIKSMMGAPIVYRMLLQQDL 316
|
| >3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans} Length = 580 | Back alignment and structure |
|---|
Score = 90.7 bits (226), Expect = 2e-20
Identities = 44/298 (14%), Positives = 86/298 (28%), Gaps = 61/298 (20%)
Query: 21 ERSAVVYRDRPSVVYGDVQ-YTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYE 79
E+ A+++ D G+ + +T+K+ K A+ GI GD V + +
Sbjct: 71 EKLAMIWCDDY----GNEKIFTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRYDFWY 126
Query: 80 LHFGVPMAGAVLCTLNT---------RHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFE 130
G+ GA+ R + + K+I E
Sbjct: 127 CMLGLHKLGAIAVPATHMLKTRDIVYR---------IEKAGLKMIVCIA-----EDDVPE 172
Query: 131 ILSKTSAKLPLLVLVPECGEPVSTVASSSGNLEYESLLAIGKLREVRRPKDEC----DPI 186
+ + A+ + L + G +++ L R + D
Sbjct: 173 QVDEAHAECGDIPLK----KAKVGGDVLEGWIDFRKELEESSPIFERPTGEVSTKNEDIC 228
Query: 187 ALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPTYLWCVPMFHCNGWCLT---W 243
+ ++SGT PK V + + L A + + L + + W
Sbjct: 229 LVYFSSGTAGFPKMVEHDNTYPLGHILTAKYW--QNVEDDGLH---------YTVADSGW 277
Query: 244 AVAA---------QGGTNVCQRTV--NAKEIFDNITRHKVTHFGGAPTVLNMIANAPP 290
G AK + + +++ VT F PT+ +
Sbjct: 278 GKCVWGKLYGQWIAGCAVFVYDYDRFEAKNMLEKASKYGVTTFCAPPTIYRFLIKEDL 335
|
| >3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A* Length = 590 | Back alignment and structure |
|---|
Score = 80.0 bits (198), Expect = 5e-17
Identities = 38/231 (16%), Positives = 72/231 (31%), Gaps = 29/231 (12%)
Query: 13 PLTPISFLERSAVVYRDRPSVVY----GDVQYTWKETHQRCVKLASGLAHLGISPGDVVA 68
+ + + A+ ++ S + + T+++ Q +A+ L G PGD V
Sbjct: 10 CQSLVDVVRLRALHSPNKKSCTFLNKELEETMTYEQLDQHAKAIAATLQAEGAKPGDRVL 69
Query: 69 ALAPNVPAMYELHFGVPMAGAVLCTL----NTRHDSAMVSVLLRHSEAKIIFVDYQLLPI 124
L + + G AG + + + ++ +S+ I+ + +
Sbjct: 70 LLFAPGLPLIQAFLGCLYAGCIAVPIYPPAQEKLLDKAQRIV-TNSKPVIVLMIADHIK- 127
Query: 125 AQGAFEILSKTSAKLPLLVLVPECGEPVSTVASSSGNLEYESLLAIGKLREVRRPKDECD 184
+ + P + +P + ES+ D
Sbjct: 128 -----KFTADELNTNPKFLKIPA--------------IALESIELNRSSSWQPTSIKSND 168
Query: 185 PIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPTYLWCVPMFH 235
L YTSG+T PKGV+ SH N M +P H
Sbjct: 169 IAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFTSFHMNDETIIFSWLPPHH 219
|
| >3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A Length = 480 | Back alignment and structure |
|---|
Score = 69.7 bits (171), Expect = 1e-13
Identities = 48/239 (20%), Positives = 81/239 (33%), Gaps = 44/239 (18%)
Query: 17 ISFLERSAVVYRDRPSVVYGD---------VQYTWKETHQRCVKLASGLAHLGISPGDVV 67
+ L A + P+ + D + TW + ++R + +A L+ G S GD V
Sbjct: 27 PAALRACARLQPHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSRCG-STGDRV 85
Query: 68 AALAPNVPAMYELHFGVPMAGAVLCTL----NTRHDSAMVSVLLRHSEAKIIFVDYQLLP 123
AP G AG + L D SVL S I +
Sbjct: 86 VISAPQGLEYVVAFLGALQAGRIAVPLSVPQGGVTDERSDSVL-SDSSPVAILTTSSAVD 144
Query: 124 IAQGAFEILSKTSAKLPLLVLVPECGEPVSTVASSSGNLEYESLLAIGKLREVRRPKDEC 183
+ +++ + P ++ + LL + +DE
Sbjct: 145 DVV---QHVARRPGESPPSIIEVD-------------------LLDLDAPNGYTFKEDEY 182
Query: 184 DPIA-LNYTSGTTSSPKGVICSHRGAYLNSLA---AALFNEMGLMP---TYLWCVPMFH 235
A L YTSG+T +P GV+ SH+ +N + G+ P + +P +H
Sbjct: 183 PSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGYFADTDGIPPPNSALVSWLPFYH 241
|
| >2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis} Length = 1304 | Back alignment and structure |
|---|
Score = 50.7 bits (122), Expect = 3e-07
Identities = 45/281 (16%), Positives = 83/281 (29%), Gaps = 62/281 (22%)
Query: 29 DRPSVVYGDVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAG 88
D P++ Y +++E + ++A L G G VVA + GV AG
Sbjct: 479 DAPALTYSGQTLSYRELDEEANRIARRLQKHGAGKGSVVALYTKRSLELVIGILGVLKAG 538
Query: 89 AVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPEC 148
A ++ + +S +L S A + ++ E ++ L + +
Sbjct: 539 AAYLPVDPKLPEDRISYMLADSAAACLLTHQEMK-------EQAAELPYTGTTLFIDDQT 591
Query: 149 GEPVST----VASSSGNLEYESLLAIGKLREVRRPKDECDPIALNYTSGTTSSPKGVICS 204
A + Y + YTSGTT PKG I +
Sbjct: 592 RFEEQASDPATAIDPNDPAY-----------------------IMYTSGTTGKPKGNITT 628
Query: 205 HRGAYLNSLAAALFNEMGLMPTYLWCVPMFH---------------CNGWCLTWAVAAQG 249
H + L + + M N L +A +
Sbjct: 629 HAN--IQGLVKHV-DYMAFSDQD--TFLSVSNYAFDAFTFDFYASMLNAARL--IIADEH 681
Query: 250 GTNVCQRTVNAKEIFDNITRHKVTHFGGAPTVLNMIANAPP 290
++ + + D I + V + N++ +A
Sbjct: 682 T------LLDTERLTDLILQENVNVMFATTALFNLLTDAGE 716
|
| >4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A* Length = 620 | Back alignment and structure |
|---|
Score = 50.2 bits (121), Expect = 4e-07
Identities = 36/279 (12%), Positives = 77/279 (27%), Gaps = 65/279 (23%)
Query: 29 DRPSVVYGDVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAG 88
R ++ +++ +L+ L PG + + ++G
Sbjct: 42 HREAIRDRFGSVDYRQLLDSAEQLSDYLLEHYPQPGVCLGVYGEYSRESITCLLAILLSG 101
Query: 89 AVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPEC 148
++ + +A + L R + ++I A G LP + +
Sbjct: 102 HHYLYIDLKQPAAWNAELCRQVDCRLILDCSTTPTPANG-----------LPCVPVRHLP 150
Query: 149 GEPVST--VASSSGNLEYESLLAIGKLREVRRPKDECDPIALNYTSGTTSSPKGVICSHR 206
P S ++ + Y +N++SGTT PK + C+H
Sbjct: 151 AAPASVARPCFAADQIAY-----------------------INFSSGTTGRPKAIACTHA 187
Query: 207 GAYLNSLAAALFNEMGLMPTYLWCVPMFH---------------CNGWCLTWAVAAQGGT 251
G + L + + P + NG C + G
Sbjct: 188 G--ITRLCLGQ-SFLAFAPQM--RFLVNSPLSFDAATLEIWGALLNGGCC--VLNDLG-- 238
Query: 252 NVCQRTVNAKEIFDNITRHKVTHFGGAPTVLNMIANAPP 290
++ + I ++ N + + P
Sbjct: 239 -----PLDPGVLRQLIGERGADSAWLTASLFNTLVDLDP 272
|
| >3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A* Length = 521 | Back alignment and structure |
|---|
Score = 43.3 bits (103), Expect = 6e-05
Identities = 38/294 (12%), Positives = 78/294 (26%), Gaps = 71/294 (24%)
Query: 29 DRPSVVYGDVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAG 88
D P + T+ + + +A+ + L + V M + +G
Sbjct: 19 DFPVYDCLGERRTYGQLKRDSDSIAAFIDSLALLAKSPVLVFGAQTYDMLATFVALTKSG 78
Query: 89 A----------------VLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEIL 132
++ + S+++ E + L+ +++ L
Sbjct: 79 HAYIPVDVHSAPERILAII------EIAK-PSLIIAIEEFPLTIEGISLVSLSEIESAKL 131
Query: 133 SKTSAKLPLLVLVPECGEPVSTVASSSGNLEYESLLAIGKLREVRRPKDECDPIALNYTS 192
++ + V + Y I +TS
Sbjct: 132 AEMPYERTHSV--------------KGDDNYY----II-------------------FTS 154
Query: 193 GTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPTYLWCVPMFHCNG-----WCLTWAVAA 247
GTT PKGV SH L S + + + +A
Sbjct: 155 GTTGQPKGVQISHDN--LLSFTNWMIEDAAFDVPKQPQMLAQPPYSFDLSVMYWAPTLAL 212
Query: 248 QGGTNVCQR---TVNAKEIFDNITRHKVTHFGGAPTVLNMIANAPPVFENRFRG 298
GGT + K++F I + V + P+ +M + + +
Sbjct: 213 -GGTLFALPKELVADFKQLFTTIAQLPVGIWTSTPSFADMAMLSDDFCQAKMPA 265
|
| >3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii} Length = 562 | Back alignment and structure |
|---|
Score = 42.6 bits (101), Expect = 9e-05
Identities = 25/112 (22%), Positives = 38/112 (33%), Gaps = 15/112 (13%)
Query: 190 YTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPTYLW------CVPMFHCNG----- 238
YTSG+T +PKGV S L+S + A +G +
Sbjct: 182 YTSGSTGTPKGVRVSRHN--LSSFSDAWGKLIGNVAPKSLELGGVGKFLCLASRAFDVHI 239
Query: 239 WCLTWAVAAQGGTNV-CQRTVNAKEIFDNITRHKVTHFGGAPTVLNMIANAP 289
+ A G V +R ++ VTH G P++L+ P
Sbjct: 240 GEMFLAWRF-GLCAVTGERLSMLDDLPRTFRELGVTHAGIVPSLLDQTGLVP 290
|
| >3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A* Length = 369 | Back alignment and structure |
|---|
Score = 41.2 bits (96), Expect = 3e-04
Identities = 18/139 (12%), Positives = 34/139 (24%), Gaps = 26/139 (18%)
Query: 184 DPIALNYTSGTTSSPKGVICSHRG-AYLNSLAAALFNEMGLMP--TYLWCVPMFHCNGWC 240
+ + GTT +PK V+ L S + + P L +P
Sbjct: 92 SHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGA 151
Query: 241 LTWAVAAQGGTNVCQRTV-----------------------NAKEIFDNITRHKVTHFGG 277
+ A + G + ++ + + +
Sbjct: 152 INKERALRLGGMFFSIDIDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVT 211
Query: 278 APTVLNMIANAPPVFENRF 296
P VL + P V
Sbjct: 212 TPPVLRELLKRPEVVLQMK 230
|
| >3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A* Length = 511 | Back alignment and structure |
|---|
Score = 40.6 bits (96), Expect = 4e-04
Identities = 20/124 (16%), Positives = 39/124 (31%), Gaps = 27/124 (21%)
Query: 190 YTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPTYLWCVPMFH-------------- 235
YTSG+T +PKGV S L S + + + ++
Sbjct: 150 YTSGSTGNPKGVQISAAN--LQSFTDWICADFPVSGGKIFL--NQAPFSFDLSVMDLYPC 205
Query: 236 -CNGWCLTWAVAAQGGTNVCQRTVNAKEIFDNITRHKVTHFGGAPTVLNMIANAPPVFEN 294
+G L + N K +F+ + + + + P+ + M P ++
Sbjct: 206 LQSGGTL--HCVTKDAVN------KPKVLFEELKKSGLNVWTSTPSFVQMCLMDPGFSQD 257
Query: 295 RFRG 298
Sbjct: 258 LLPH 261
|
| >3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A* Length = 512 | Back alignment and structure |
|---|
Score = 40.6 bits (96), Expect = 5e-04
Identities = 18/115 (15%), Positives = 32/115 (27%), Gaps = 27/115 (23%)
Query: 190 YTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPTYLWCVPMFH-------------- 235
YTSG+T +PKGV ++ L S + L
Sbjct: 151 YTSGSTGNPKGVQITYNC--LVSFTKWAVEDFNLQTGQ--VFLNQAPFSFDLSVMDIYPS 206
Query: 236 -CNGWCLTWAVAAQGGTNVCQRTVNAKEIFDNITRHKVTHFGGAPTVLNMIANAP 289
G L + K++F ++ + + + P+ M
Sbjct: 207 LVTGGTL--WAIDKDMIA------RPKDLFASLEQSDIQVWTSTPSFAEMCLMEA 253
|
| >1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1 Length = 563 | Back alignment and structure |
|---|
Score = 40.2 bits (95), Expect = 7e-04
Identities = 21/115 (18%), Positives = 39/115 (33%), Gaps = 27/115 (23%)
Query: 190 YTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPTYLWCVPMFH-------------- 235
YTSGTT +PKG + H+G +++L N + + + F
Sbjct: 189 YTSGTTGNPKGTMLEHKG--ISNLKVFFENSLNVTEKD--RIGQFASISFDASVWEMFMA 244
Query: 236 -CNGWCLTWAVAAQGGTNVCQRTVNAKEIFDNITRHKVTHFGGAPTVLNMIANAP 289
G L + + N + + I + ++T PT + +
Sbjct: 245 LLTGASL--YIILKDTIN------DFVKFEQYINQKEITVITLPPTYVVHLDPER 291
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 301 | |||
| 3g7s_A | 549 | Long-chain-fatty-acid--COA ligase (FADD-1); protei | 100.0 | |
| 3ivr_A | 509 | Putative long-chain-fatty-acid COA ligase; structu | 100.0 | |
| 3r44_A | 517 | Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s | 100.0 | |
| 1mdb_A | 539 | 2,3-dihydroxybenzoate-AMP ligase; adenylation doma | 100.0 | |
| 3o83_A | 544 | Peptide arylation enzyme; ligase, adenylation of 2 | 100.0 | |
| 3rix_A | 550 | Luciferase, luciferin 4-monooxygenase; oxidoreduct | 100.0 | |
| 3ni2_A | 536 | 4-coumarate:COA ligase; 4CL, phenylpropanoid biosy | 100.0 | |
| 1v25_A | 541 | Long-chain-fatty-acid-COA synthetase; ligase, stru | 100.0 | |
| 3fce_A | 512 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 100.0 | |
| 3rg2_A | 617 | Enterobactin synthase component E (ENTE), 2,3-DIH | 100.0 | |
| 2d1s_A | 548 | Luciferase, luciferin 4-monooxygenase; alpha/beta, | 100.0 | |
| 1t5h_X | 504 | 4-chlorobenzoyl COA ligase; adenylate-forming coen | 100.0 | |
| 1ry2_A | 663 | Acetyl-coenzyme A synthetase 1, acyl-activating en | 100.0 | |
| 4fuq_A | 503 | Malonyl COA synthetase; ANL superfamily, methylma | 100.0 | |
| 3c5e_A | 570 | Acyl-coenzyme A synthetase ACSM2A, mitochondrial; | 100.0 | |
| 2v7b_A | 529 | Benzoate-coenzyme A ligase; benzoate oxidation, be | 100.0 | |
| 1pg4_A | 652 | Acetyl-COA synthetase; AMP-forming, adenylate-form | 100.0 | |
| 3t5a_A | 480 | Long-chain-fatty-acid--AMP ligase FADD28; acetyl-C | 100.0 | |
| 3ipl_A | 501 | 2-succinylbenzoate--COA ligase; structural genomic | 100.0 | |
| 3etc_A | 580 | AMP-binding protein; adenylate-forming acyl-COA sy | 100.0 | |
| 3e7w_A | 511 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 100.0 | |
| 3tsy_A | 979 | Fusion protein 4-coumarate--COA ligase 1, resvera | 100.0 | |
| 1amu_A | 563 | GRSA, gramicidin synthetase 1; peptide synthetase, | 100.0 | |
| 3l8c_A | 521 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 100.0 | |
| 4gr5_A | 570 | Non-ribosomal peptide synthetase; MBTH-like domain | 100.0 | |
| 4dg8_A | 620 | PA1221; ANL superfamily, adenylation domain, pepti | 100.0 | |
| 3kxw_A | 590 | Saframycin MX1 synthetase B; fatty acid AMP ligase | 100.0 | |
| 3gqw_A | 576 | Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen | 100.0 | |
| 2vsq_A | 1304 | Surfactin synthetase subunit 3; ligase, peptidyl c | 100.0 | |
| 3ite_A | 562 | SIDN siderophore synthetase; ligase, non-ribosomal | 100.0 | |
| 3nyq_A | 505 | Malonyl-COA ligase; A/B topology ababa sandwich be | 100.0 | |
| 4gs5_A | 358 | Acyl-COA synthetase (AMP-forming)/AMP-acid ligase | 99.83 | |
| 3hgu_A | 369 | EHPF; phenazine, antibiotic, biosynthetic protein; | 99.72 | |
| 2y27_A | 437 | Phenylacetate-coenzyme A ligase; phenylacetic acid | 99.72 | |
| 3qov_A | 436 | Phenylacetate-coenzyme A ligase; acetyl-COA synthe | 99.71 | |
| 2y4o_A | 443 | Phenylacetate-coenzyme A ligase; phenylacetic acid | 99.71 | |
| 3qov_A | 436 | Phenylacetate-coenzyme A ligase; acetyl-COA synthe | 95.46 | |
| 2y27_A | 437 | Phenylacetate-coenzyme A ligase; phenylacetic acid | 95.45 | |
| 2y4o_A | 443 | Phenylacetate-coenzyme A ligase; phenylacetic acid | 95.4 | |
| 1mdb_A | 539 | 2,3-dihydroxybenzoate-AMP ligase; adenylation doma | 91.3 | |
| 3hgu_A | 369 | EHPF; phenazine, antibiotic, biosynthetic protein; | 90.55 | |
| 3o83_A | 544 | Peptide arylation enzyme; ligase, adenylation of 2 | 90.44 | |
| 3rix_A | 550 | Luciferase, luciferin 4-monooxygenase; oxidoreduct | 89.96 | |
| 3r44_A | 517 | Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s | 89.43 | |
| 2d1s_A | 548 | Luciferase, luciferin 4-monooxygenase; alpha/beta, | 88.94 | |
| 3ipl_A | 501 | 2-succinylbenzoate--COA ligase; structural genomic | 88.63 | |
| 3g7s_A | 549 | Long-chain-fatty-acid--COA ligase (FADD-1); protei | 86.59 | |
| 1v25_A | 541 | Long-chain-fatty-acid-COA synthetase; ligase, stru | 86.48 | |
| 3ni2_A | 536 | 4-coumarate:COA ligase; 4CL, phenylpropanoid biosy | 85.53 | |
| 3ivr_A | 509 | Putative long-chain-fatty-acid COA ligase; structu | 85.41 | |
| 3rg2_A | 617 | Enterobactin synthase component E (ENTE), 2,3-DIH | 84.77 | |
| 4fuq_A | 503 | Malonyl COA synthetase; ANL superfamily, methylma | 83.86 | |
| 3fce_A | 512 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 82.92 | |
| 1amu_A | 563 | GRSA, gramicidin synthetase 1; peptide synthetase, | 82.69 | |
| 3etc_A | 580 | AMP-binding protein; adenylate-forming acyl-COA sy | 82.63 | |
| 3c5e_A | 570 | Acyl-coenzyme A synthetase ACSM2A, mitochondrial; | 82.45 | |
| 3t5a_A | 480 | Long-chain-fatty-acid--AMP ligase FADD28; acetyl-C | 82.08 | |
| 1t5h_X | 504 | 4-chlorobenzoyl COA ligase; adenylate-forming coen | 81.87 | |
| 1pg4_A | 652 | Acetyl-COA synthetase; AMP-forming, adenylate-form | 81.7 | |
| 3kxw_A | 590 | Saframycin MX1 synthetase B; fatty acid AMP ligase | 81.21 | |
| 1ry2_A | 663 | Acetyl-coenzyme A synthetase 1, acyl-activating en | 81.19 | |
| 3e7w_A | 511 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 80.37 |
| >3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.3e-45 Score=331.74 Aligned_cols=269 Identities=22% Similarity=0.254 Sum_probs=234.1
Q ss_pred cccCCCCCCCCHHHHHHHHhhhcCCccEEEECC--------eeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHH
Q 046637 5 IRCSANYVPLTPISFLERSAVVYRDRPSVVYGD--------VQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPA 76 (301)
Q Consensus 5 ~~~~~~~~~~~~~~~l~~~~~~~~~~~al~~~~--------~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~ 76 (301)
+.++.+++.+++.++|++.++++||++|+++.+ +++||+||.++++++|..|.+.|+++||+|+++++|+++
T Consensus 10 ~~p~~~~~~~~l~~~l~~~a~~~p~~~A~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~ 89 (549)
T 3g7s_A 10 GFPSLYYPKISLADRIDAAAEKFGEKTAIISAEPKFPSEFPESMNFLEICEVTKKLASGISRKGVRKGEHVGVCIPNSID 89 (549)
T ss_dssp CCCCCCCCCCCTTHHHHHHHHHHTTSEEEEEESSCCCCSSCSEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHH
T ss_pred CCCCCCcCCCCHHHHHHHHHHhCCCceEEEeCCCcccccccceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHH
Confidence 344567789999999999999999999999977 899999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhccceeeecCCCCCHHHHHHHHHhcCceEEEEcCCchhhHHHHHHHhccccCCCCceEEccCCCCCCcccc
Q 046637 77 MYELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVA 156 (301)
Q Consensus 77 ~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 156 (301)
+++++|||+++|++++|++|.++.+++.+++++++++++|++......+....... .++.++..+..
T Consensus 90 ~~~~~lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~~~~~~~~~-----~~~~~~~~~~~-------- 156 (549)
T 3g7s_A 90 YVMTIYALWRVAATPVPINPMYKSFELEHILNDSEATTLVVHSMLYENFKPVLEKT-----GVERVFVVGGE-------- 156 (549)
T ss_dssp HHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHTTS-----CCCEEEEETCS--------
T ss_pred HHHHHHHHHHhCCEEEccCCCCCHHHHHHHHHhcCCCEEEEChHHHHHHHHHHhhC-----CCcEEEEeCCC--------
Confidence 99999999999999999999999999999999999999999988776665554332 34555554422
Q ss_pred cCCCCccHHHHHhhccccccCCCCCC-CCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhhCCCCCEEEEeccchh
Q 046637 157 SSSGNLEYESLLAIGKLREVRRPKDE-CDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPTYLWCVPMFH 235 (301)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~h 235 (301)
...+.++..............+ +++++|+|||||||.||||+++|.++..++......+++.++|++++.+|++|
T Consensus 157 ----~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~ 232 (549)
T 3g7s_A 157 ----VNSLSEVMDSGSEDFENVKVNPEEDVALIPYTGGTTGMPKGVMLTHFNLAANALQLAVATGLSHMDTIVGCMPMFH 232 (549)
T ss_dssp ----SSCHHHHHHHSCSCCCCCCCCTTTSEEECCEECCCCC-CEEEEEEHHHHHHHHHHHHHHHCCCTTCEEECCSCTTS
T ss_pred ----CcCHHHHHhcCccccccccCCCCCCEEEEEECCCccCCCceEEEcHHHHHHHHHHHHHHcCCCCCCEEEEeCcHHH
Confidence 1456666655444322222333 89999999999999999999999999999998888899999999999999999
Q ss_pred hhhhHHHHHHHHhCCeEEeeCCCCHHHHHHHHHhcCcceecCChHHHHHHHcCCC
Q 046637 236 CNGWCLTWAVAAQGGTNVCQRTVNAKEIFDNITRHKVTHFGGAPTVLNMIANAPP 290 (301)
Q Consensus 236 ~~g~~~~~~~l~~g~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~ 290 (301)
.+|+...+.++..|+++++.+.+++..+++.++++++|+++++|++++.|++.+.
T Consensus 233 ~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~ 287 (549)
T 3g7s_A 233 SAEFGLVNLMVTVGNEYVVMGMFNQEMLAENIEKYKGTFSWAVPPALNVLVNTLE 287 (549)
T ss_dssp HHHHHHHTTHHHHCCEEEEESSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCceEEEcCCCCHHHHHHHHHHhCCeEEEeCCHHHHHHHhhhh
Confidence 9998888888999999999999999999999999999999999999999987644
|
| >3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-44 Score=326.13 Aligned_cols=264 Identities=20% Similarity=0.287 Sum_probs=225.3
Q ss_pred CCCCCCHHHHHHHHhhhcCCccEEEECCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHhhhccc
Q 046637 10 NYVPLTPISFLERSAVVYRDRPSVVYGDVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAGA 89 (301)
Q Consensus 10 ~~~~~~~~~~l~~~~~~~~~~~al~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~ 89 (301)
.+.++++.++|++.++++||++|+++.++++||+||.++++++|..|.+.|+++||+|+++++|++++++++|||+++|+
T Consensus 2 s~~~~tl~~~l~~~a~~~pd~~Al~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga 81 (509)
T 3ivr_A 2 SLHDFTLADVYRRNAALFPDRTAFMVDGVRLTHRDYLARAERLASGLLRDGVHTGDRVAILSQNCSEMIELIGAVALIGA 81 (509)
T ss_dssp CTTCCCHHHHHHHHHHHSTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHTTC
T ss_pred CCCcCCHHHHHHHHHHHCCCceEEEECCcEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHhCC
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeecCCCCCHHHHHHHHHhcCceEEEEcCCchhhHHHHHHHhccccCCCCceEEccCCCCCCcccccCCCCccHHHHHh
Q 046637 90 VLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVASSSGNLEYESLLA 169 (301)
Q Consensus 90 ~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (301)
+++|++|.++.+++.+++++++++++|++......+........ .+..++.+++... .+.++..
T Consensus 82 ~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~------------~~~~~~~ 145 (509)
T 3ivr_A 82 ILLPVNYRLNADEIAFVLGDGAPSVVVAGTDYRDIVAGVLPSLG----GVKKAYAIGDGSG------------PFAPFKD 145 (509)
T ss_dssp EEEECCTTSCHHHHHHHHHHHCEEEEEECSTTHHHHHHHGGGCS----SCCEEEESSCCCS------------SCEEGGG
T ss_pred EEEecCCCCCHHHHHHHHHhcCceEEEECcchhhhHHhhhcccC----CceEEEEcCCCCc------------ChhhHhh
Confidence 99999999999999999999999999999887765444433332 5566666654221 1111111
Q ss_pred -hccccccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhhCCCCCEEEEeccchhhhhhHHHHHHHHh
Q 046637 170 -IGKLREVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPTYLWCVPMFHCNGWCLTWAVAAQ 248 (301)
Q Consensus 170 -~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~h~~g~~~~~~~l~~ 248 (301)
............++++++|+|||||||.||||++||.++..........+++.++|++++.+|++|.+|+...+.++..
T Consensus 146 ~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~~~ 225 (509)
T 3ivr_A 146 LASDTPFSAPEFGAADGFVIIHTAAVGGRPRGALISQGNLLIAQSSLVDAWRLTEADVNLGMLPLFHVTGLGLMLTLQQA 225 (509)
T ss_dssp TCCCSCCCCCCCCTTSEEEEEEEEC--CCEEEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHHHHHHHHH
T ss_pred ccCCCCCCcCCCCccccEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhhCCCCCcEEEEeCCCcchhHHHHHHHHHHh
Confidence 1111122334678899999999999999999999999999999988888999999999999999999999887777777
Q ss_pred CCeEEeeCCCCHHHHHHHHHhcCcceecCChHHHHHHHcCC
Q 046637 249 GGTNVCQRTVNAKEIFDNITRHKVTHFGGAPTVLNMIANAP 289 (301)
Q Consensus 249 g~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~ 289 (301)
|++.++...+++..+++.++++++|+++++|+++..|++..
T Consensus 226 ~g~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~ 266 (509)
T 3ivr_A 226 GGASVIAAKFDPAQAARDIEAHKVTVMAEFAPMLGNILDQA 266 (509)
T ss_dssp TCEEEECSSCCHHHHHHHHHHHTCCEEEEETTHHHHHHHHC
T ss_pred CCcEEEecccCHHHHHHHHHHHCCcEEEecHHHHHHHHhcc
Confidence 77777777899999999999999999999999999999876
|
| >3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-44 Score=328.19 Aligned_cols=274 Identities=23% Similarity=0.237 Sum_probs=229.6
Q ss_pred CCCCCCCCHHHHHHHHhhhcCCccEEEECCe--eeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHhh
Q 046637 8 SANYVPLTPISFLERSAVVYRDRPSVVYGDV--QYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVP 85 (301)
Q Consensus 8 ~~~~~~~~~~~~l~~~~~~~~~~~al~~~~~--~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~ 85 (301)
.......++.++|+++++++|+++|+++.++ ++||+||.++++++|..|.+.|+++||+|+++++|++++++++|||+
T Consensus 10 ~~~~~~~~l~~~l~~~a~~~p~~~A~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~ 89 (517)
T 3r44_A 10 DDDDKMKNIGWMLRQRATVSPRLQAYVEPSTDVRMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLFYGAA 89 (517)
T ss_dssp --CGGGGCHHHHHHHHHHHSTTSEEEEEGGGTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHH
T ss_pred CCcccccCHHHHHHHHHHhCCCCeEEEeCCcCceeeHHHHHHHHHHHHHHHHHcCCCCcCEEEEEcCCCHHHHHHHHHHH
Confidence 3344588999999999999999999999776 99999999999999999999999999999999999999999999999
Q ss_pred hccceeeecCCCCCHHHHHHHHHhcCceEEEEcCCchhhHHHHHHHhccccCCCCceEEccCCCCCCcccccCCCCccHH
Q 046637 86 MAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVASSSGNLEYE 165 (301)
Q Consensus 86 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 165 (301)
++|++++|++|.++.+++.+++++++++++|++......+........ ....++..... ..+.
T Consensus 90 ~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~----~~~~~~~~~~~-------------~~~~ 152 (517)
T 3r44_A 90 KLGAVAVPINTRLAAPEVSFILSDSGSKVVIYGAPSAPVIDAIRAQAD----PPGTVTDWIGA-------------DSLA 152 (517)
T ss_dssp HHTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHHHSSS----CCTTCCEEEEH-------------HHHH
T ss_pred HhCcEEEecCcccCHHHHHHHHHhcCceEEEECCchHHHHHHHHhccC----CccEEEEccCc-------------ccHH
Confidence 999999999999999999999999999999999887766665544332 22222221110 2344
Q ss_pred HHHhhccccccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhhCCCCCEEEEeccchhhhhhHHHHHH
Q 046637 166 SLLAIGKLREVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPTYLWCVPMFHCNGWCLTWAV 245 (301)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~h~~g~~~~~~~ 245 (301)
+...............++++++|+|||||||.||||++||.++..++......+++..+|++++.+|++|.+|+...+.+
T Consensus 153 ~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~ 232 (517)
T 3r44_A 153 ERLRSAAADEPAVECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTIDVRYRDRLLLPLPMFHVAALTTVIFS 232 (517)
T ss_dssp HHHHHCCCCCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHSCCCTTCEEEECSCTTSHHHHHHHHHH
T ss_pred HHhhccCcCCCCCCCCCCCeEEEEECCcccccCceeeeeHHHHHHHHHHHHHhcCCCCCCEEEEeCchHHHHHHHHHHHH
Confidence 44444433334445678999999999999999999999999999999988888899999999999999999998876666
Q ss_pred HHhCCeEEeeCCCCHHHHHHHHHhcCcceecCChHHHHHHHcCCCCccccccC
Q 046637 246 AAQGGTNVCQRTVNAKEIFDNITRHKVTHFGGAPTVLNMIANAPPVFENRFRG 298 (301)
Q Consensus 246 l~~g~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~ 298 (301)
++.|+++++.+.+++..+++.++++++|++.++|++++.|.+.+.....++++
T Consensus 233 ~~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~ 285 (517)
T 3r44_A 233 AMRGVTLISMPQFDATKVWSLIVEERVCIGGAVPAILNFMRQVPEFAELDAPD 285 (517)
T ss_dssp HHHTCEEEECSSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHSHHHHHCCCTT
T ss_pred HhcCeEEEEeCCCCHHHHHHHHHHhCCeEEEeHHHHHHHHHhCcccccCCCCc
Confidence 66999999999999999999999999999999999999999876655555443
|
| >1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-44 Score=328.48 Aligned_cols=272 Identities=21% Similarity=0.244 Sum_probs=226.9
Q ss_pred CCCCCCHHHHHHHHhhhcCCccEEEECCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHhhhccc
Q 046637 10 NYVPLTPISFLERSAVVYRDRPSVVYGDVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAGA 89 (301)
Q Consensus 10 ~~~~~~~~~~l~~~~~~~~~~~al~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~ 89 (301)
.+...++.++|++.++++||++|+++.++++||+||.++++++|+.|.+.|+++||+|+++++|++++++++|||+++|+
T Consensus 21 ~~~~~tl~~~l~~~a~~~p~~~A~~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga 100 (539)
T 1mdb_A 21 CWAGETFGDLLRDRAAKYGDRIAITCGNTHWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFALFRLGA 100 (539)
T ss_dssp SSCSCCHHHHHHHHHHHHTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEECCCSSHHHHHHHHHHHHHTC
T ss_pred cccCCCHHHHHHHHHHHCCCCEEEEeCCCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCe
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeecCCCCCHHHHHHHHHhcCceEEEEcCCchh-----hHHHHHHHhccccCCCCceEEccCCCCCCcccccCCCCccH
Q 046637 90 VLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLP-----IAQGAFEILSKTSAKLPLLVLVPECGEPVSTVASSSGNLEY 164 (301)
Q Consensus 90 ~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~-----~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 164 (301)
+++|++|.++.+++.++++.++++++|+++.... .........+ .++.++..++.. .+
T Consensus 101 ~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~-------------~~ 163 (539)
T 1mdb_A 101 LPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLP----TLKNIIVAGEAE-------------EF 163 (539)
T ss_dssp EEEECCTTCCHHHHHHHHHHTTCSEEEEESEETTEEHHHHHHHHHHHCT----TCCCEEEESCCT-------------TS
T ss_pred EEecCCCCCCHHHHHHHHHhCCCCEEEeccccccccHHHHHHHHHhcCC----CccEEEEcCCcc-------------ch
Confidence 9999999999999999999999999999876432 2223333222 455555544321 01
Q ss_pred HHHHhhccccccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhhCCCCCEEEEeccchhhhhhHH--H
Q 046637 165 ESLLAIGKLREVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPTYLWCVPMFHCNGWCL--T 242 (301)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~h~~g~~~--~ 242 (301)
.++..............++++++|+|||||||.||||++||.++..++......+++.++|++++.+|++|.+|+.. +
T Consensus 164 ~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~ 243 (539)
T 1mdb_A 164 LPLEDLHTEPVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDHSTVYLAALPMAHNYPLSSPGV 243 (539)
T ss_dssp EEGGGCCCCCCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECSCTTSHHHHHSSHH
T ss_pred hhhhhccccccccCCCCcCceEEEEeCCCcCCCCcEEEEehHHHHHHHHHHHHhhCCCCCCEEEEeecccccchhhHHHH
Confidence 11111111111123456789999999999999999999999999998888888888999999999999999999874 7
Q ss_pred HHHHHhCCeEEeeCCCCHHHHHHHHHhcCcceecCChHHHHHHHcCCCCccccccC
Q 046637 243 WAVAAQGGTNVCQRTVNAKEIFDNITRHKVTHFGGAPTVLNMIANAPPVFENRFRG 298 (301)
Q Consensus 243 ~~~l~~g~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~ 298 (301)
+.++..|+++++.+.+++..+++.++++++|++.++|++++.|++.......++++
T Consensus 244 ~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~ 299 (539)
T 1mdb_A 244 LGVLYAGGRVVLSPSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRDDLSS 299 (539)
T ss_dssp HHHHHTTCEEEECSSSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHCCCCCTT
T ss_pred HHHHHhCCEEEECCCCCHHHHHHHHHHcCCeEEEccHHHHHHHHhCccccCCCccc
Confidence 88999999999999999999999999999999999999999998765444444443
|
| >3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-44 Score=325.53 Aligned_cols=275 Identities=16% Similarity=0.206 Sum_probs=231.5
Q ss_pred CCCCCCHHHHHHHHhhhcCCccEEEECCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHhhhccc
Q 046637 10 NYVPLTPISFLERSAVVYRDRPSVVYGDVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAGA 89 (301)
Q Consensus 10 ~~~~~~~~~~l~~~~~~~~~~~al~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~ 89 (301)
.|.++++.++|++.++++||++|+++.++++||+||.++++++|+.|.+.|+++||+|+++++|++++++++|||+++|+
T Consensus 26 ~~~~~tl~~~l~~~a~~~p~~~Al~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~Ga 105 (544)
T 3o83_A 26 YWIDQPLTRILTVGVQSHPHSLAIICGERQLSYIELDRLSTNLATRLAEKGLGKGDTALVQLPNVAEFYIVFFALLKAGV 105 (544)
T ss_dssp SCCCCCTTHHHHHHHHHCTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHHhCCCceEEEcCCCceeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHhCc
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeecCCCCCHHHHHHHHHhcCceEEEEcCCch-----hhHHHHHHHhccccCCCCceEEccCCCCCCcccccCCCCccH
Q 046637 90 VLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLL-----PIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVASSSGNLEY 164 (301)
Q Consensus 90 ~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 164 (301)
+++|+++.++.+++.+++++++++++|++.... ........... ....++.++.... ...+
T Consensus 106 v~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~----------~~~~ 171 (544)
T 3o83_A 106 VVLNALYSHRQYELNAFIKQIQPKLLIGSRQHEVFSNNQFIDSLHDVNL----SPEIILMLNHQAT----------DFGL 171 (544)
T ss_dssp EEEECCTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHTTC----CCSEEEEETCCTT----------SEEH
T ss_pred EEecCCCCCCHHHHHHHHHhcCeeEEEEccccccccHHHHHHHHhhccc----CcceEEEecCCcc----------ccch
Confidence 999999999999999999999999999987654 22333332222 3455555443211 1234
Q ss_pred HHHHhhcccc-ccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhhCCCCCEEEEeccchhhhhhHH--
Q 046637 165 ESLLAIGKLR-EVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPTYLWCVPMFHCNGWCL-- 241 (301)
Q Consensus 165 ~~~~~~~~~~-~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~h~~g~~~-- 241 (301)
.++....... .......++++++|+|||||||.||||++||.++..++......+++.++|++++.+|++|.+++..
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~ 251 (544)
T 3o83_A 172 LDWIETPAETFVDFSSTPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEICGLNSNTRLLCALPAPHNFMLSSPG 251 (544)
T ss_dssp HHHHHSCCSSCCCCCCCCTTSEEEEEECCC--CCCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHSSH
T ss_pred hhhhhcccccccccccCCccceEEEEECCCcccCCceEEechHHHHHHHHHHHHHhCCCCCCeEEEecCcceEeecchHH
Confidence 4444433222 1223466889999999999999999999999999999999888899999999999999999999874
Q ss_pred HHHHHHhCCeEEeeCCCCHHHHHHHHHhcCcceecCChHHHHHHHcCCCCccccccC
Q 046637 242 TWAVAAQGGTNVCQRTVNAKEIFDNITRHKVTHFGGAPTVLNMIANAPPVFENRFRG 298 (301)
Q Consensus 242 ~~~~l~~g~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~ 298 (301)
++.++..|+++++.+.+++..+++.++++++|++.++|+++..|++.......++++
T Consensus 252 ~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~ 308 (544)
T 3o83_A 252 ALGVLHAGGCVVMAPNPEPLNCFSIIQRHQVNMASLVPSAVIMWLEKAAQYKDQIQS 308 (544)
T ss_dssp HHHHHHTTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHTTTHHHHTT
T ss_pred HHHHHHcCCEEEECCCCCHHHHHHHHHHHCCCEEEechHHHHHHHhchhhccccCCc
Confidence 788899999999999999999999999999999999999999999876665555544
|
| >3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-44 Score=326.83 Aligned_cols=282 Identities=16% Similarity=0.130 Sum_probs=235.3
Q ss_pred cCCCCCCCCHHHHHHHHhhhcCCccEEE---E--CCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHH
Q 046637 7 CSANYVPLTPISFLERSAVVYRDRPSVV---Y--GDVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELH 81 (301)
Q Consensus 7 ~~~~~~~~~~~~~l~~~~~~~~~~~al~---~--~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~ 81 (301)
.+.++++.++.++|.+.++++|+++|++ + .++++||+||.++++++|+.|.+.|+++||+|+++++|++++++++
T Consensus 13 ~~~~~~~~tl~~~l~~~a~~~p~~~a~~a~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~ 92 (550)
T 3rix_A 13 PFYPLEDGTAGEQLHKAMKRYALVPGTIAFTDAHIEVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPV 92 (550)
T ss_dssp CSSCCCCSCHHHHHHHHHHHHHTSTTCEEEEETTTCCEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTTHHHH
T ss_pred CCCCcccCCHHHHHHHHHHhCCCCceEEEeeecCCCcEeEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcccHHHHH
Confidence 4667778999999999999999999976 4 3579999999999999999999999999999999999999999999
Q ss_pred HHhhhccceeeecCCCCCHHHHHHHHHhcCceEEEEcCCchhhHHHHHHHhccccCCCCceEEccCCCCCCcccccCCCC
Q 046637 82 FGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVASSSGN 161 (301)
Q Consensus 82 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 161 (301)
|||+++|++++|++|.++.+++.++++.++++++|++.+....+.......+ .++.++.++.... ..+.
T Consensus 93 lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~-------~~~~ 161 (550)
T 3rix_A 93 LGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQKKLP----IIQKIIIMDSKTD-------YQGF 161 (550)
T ss_dssp HHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGHHHHHHHHHHCT----TCCEEEETTCSSC-------BTTB
T ss_pred HHHHHcCCEEeecCCcCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHHhhCC----CcceEEEEcCCcc-------ccCc
Confidence 9999999999999999999999999999999999999988777777666555 5677777665422 1233
Q ss_pred ccHHHHHhhcccc-------ccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHH---hhCCCCCEEEEec
Q 046637 162 LEYESLLAIGKLR-------EVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALF---NEMGLMPTYLWCV 231 (301)
Q Consensus 162 ~~~~~~~~~~~~~-------~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~---~~~~~~~~~l~~~ 231 (301)
..+.++....... .......++++++|+|||||||.||||++||.++.......... +++.+++++++.+
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 241 (550)
T 3rix_A 162 QSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVV 241 (550)
T ss_dssp CBHHHHHHHHCCTTCCTTTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECS
T ss_pred ccHHHHhhccccccccccccCCCCCCCCCCEEEEEECCCcccCcchhhhhHHHHHHHHHHhhhhhccccCCCCcEEEEec
Confidence 5566665443321 11122345789999999999999999999999998877665544 4677899999999
Q ss_pred cchhhhhhHHHHHHHHhCCeEEeeCCCCHHHHHHHHHhcCcceecCChHHHHHHHcCCCCccccccCC
Q 046637 232 PMFHCNGWCLTWAVAAQGGTNVCQRTVNAKEIFDNITRHKVTHFGGAPTVLNMIANAPPVFENRFRGR 299 (301)
Q Consensus 232 p~~h~~g~~~~~~~l~~g~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~~ 299 (301)
|++|.+|+...+.++..|+++++.+.+++..+++.++++++|+++++|++++.|++.+...+.++++.
T Consensus 242 p~~~~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~l 309 (550)
T 3rix_A 242 PFHHGFGMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYDLSNL 309 (550)
T ss_dssp CTTSHHHHHHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCSEEEECHHHHHHHHHCCGGGGSCCTTC
T ss_pred hHHHHHHHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHcCCeEEEeCcHHHHHHHhCccccccCcccc
Confidence 99999999888889999999999999999999999999999999999999999999887777666543
|
| >3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-43 Score=323.19 Aligned_cols=277 Identities=21% Similarity=0.265 Sum_probs=236.2
Q ss_pred CCCCC-CCCHHHHHHHHhhhcCCccEEEEC--CeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHh
Q 046637 8 SANYV-PLTPISFLERSAVVYRDRPSVVYG--DVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGV 84 (301)
Q Consensus 8 ~~~~~-~~~~~~~l~~~~~~~~~~~al~~~--~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~ 84 (301)
+.+.+ .+++.++|.++++++||++|+++. ++++||+||.++++++|+.|.+.|+++||+|+++++|++++++++|||
T Consensus 15 ~~~~p~~~~l~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~la~ 94 (536)
T 3ni2_A 15 DIYIPKNLPLHSYVLENLSNHSSKPCLINGANGDVYTYADVELTARRVASGLNKIGIQQGDVIMLFLPSSPEFVLAFLGA 94 (536)
T ss_dssp CCCCCSSCCHHHHHTTTGGGSTTSEEEEETTTCCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHH
T ss_pred CCCCCCCCcHHHHHHHHhhcCCCceEEEECCCCCEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHH
Confidence 33444 589999999999999999999995 579999999999999999999999999999999999999999999999
Q ss_pred hhccceeeecCCCCCHHHHHHHHHhcCceEEEEcCCchhhHHHHHHHhccccCCCCceEEccCCCCCCcccccCCCCccH
Q 046637 85 PMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVASSSGNLEY 164 (301)
Q Consensus 85 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 164 (301)
+++|++++|++|.++.+++.+++++++++++|++......+.+...... . .++.++... .+...+
T Consensus 95 ~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~-----~-~~~~~~~~~---------~~~~~~ 159 (536)
T 3ni2_A 95 SHRGAIITAANPFSTPAELAKHAKASRAKLLITQACYYEKVKDFARESD-----V-KVMCVDSAP---------DGCLHF 159 (536)
T ss_dssp HHHTCEEEECCTTCCHHHHHHHHHHHTEEEEEECGGGTHHHHHHHHHHT-----C-EEEESSCCC---------TTCEET
T ss_pred HHhCCEEeccCCCCCHHHHHHHHHhcCCEEEEEChHHHHHHHHHHhhcC-----c-eEEEecCCC---------CCccCH
Confidence 9999999999999999999999999999999999887777666554322 2 344444321 233566
Q ss_pred HHHHhhccccccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHH----HhhCCCCCEEEEeccchhhhhhH
Q 046637 165 ESLLAIGKLREVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAAL----FNEMGLMPTYLWCVPMFHCNGWC 240 (301)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~----~~~~~~~~~~l~~~p~~h~~g~~ 240 (301)
.++..............++++++|+|||||||.||||++||.+++..+..... .+.+.++|++++.+|++|.+|+.
T Consensus 160 ~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~ 239 (536)
T 3ni2_A 160 SELTQADENEAPQVDISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNPNLYFHSEDVILCVLPMFHIYALN 239 (536)
T ss_dssp HHHHTSCGGGCCCCCCCTTSEEECCEECTTSSSCEEEEEEHHHHHHHHHHHHCSSSCSSCCCTTCCEEECSCTTSHHHHH
T ss_pred HHHhhccccccccCCCCccCEEEEEcCCCccccchHHHhhHHHHHHHHHHHHhhccccccCCCCCEEEEecChHHHHHHH
Confidence 66665544433444567899999999999999999999999999887766543 34577899999999999999986
Q ss_pred H-HHHHHHhCCeEEeeCCCCHHHHHHHHHhcCcceecCChHHHHHHHcCCCCccccccCC
Q 046637 241 L-TWAVAAQGGTNVCQRTVNAKEIFDNITRHKVTHFGGAPTVLNMIANAPPVFENRFRGR 299 (301)
Q Consensus 241 ~-~~~~l~~g~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~~ 299 (301)
. ++.++..|+++++.+.+++..+++.++++++|++.++|+++..|++.+.....++++.
T Consensus 240 ~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~l 299 (536)
T 3ni2_A 240 SIMLCGLRVGAPILIMPKFEIGSLLGLIEKYKVSIAPVVPPVMMSIAKSPDLDKHDLSSL 299 (536)
T ss_dssp HTHHHHHHHTCCEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTCSCGGGSCCTTC
T ss_pred HHHHHHHhcCCEEEEcCCCCHHHHHHHHHHhCCeEEEccHHHHHHHHhCcccccCCCccc
Confidence 4 6888999999999999999999999999999999999999999999988777777653
|
| >1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-43 Score=323.81 Aligned_cols=272 Identities=32% Similarity=0.430 Sum_probs=226.1
Q ss_pred CCCCCHHHHHHHHhhhcCCccEEEE----CCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHhhh
Q 046637 11 YVPLTPISFLERSAVVYRDRPSVVY----GDVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPM 86 (301)
Q Consensus 11 ~~~~~~~~~l~~~~~~~~~~~al~~----~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~ 86 (301)
..+.++.++|++.++++||++|+++ .++++||+||.++++++|..|.+.|+++||+|+++++|++++++++|||++
T Consensus 15 ~~~~~l~~~l~~~a~~~p~~~a~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~ 94 (541)
T 1v25_A 15 DEELNLWDFLERAAALFGRKEVVSRLHTGEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFAVPG 94 (541)
T ss_dssp CCCCCTHHHHHHHHHHSTTCEEEEECTTSCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHhCCCceEEEEecCCCCceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHh
Confidence 3467999999999999999999995 457999999999999999999999999999999999999999999999999
Q ss_pred ccceeeecCCCCCHHHHHHHHHhcCceEEEEcCCchhhHHHHHHHhccccCCCCceEEccCCCCCCcccccCCCCccHHH
Q 046637 87 AGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVASSSGNLEYES 166 (301)
Q Consensus 87 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 166 (301)
+|++++|++|.++.+++.+++++++++++|++.+....+.......+ .++.++.++.... .+...+.+
T Consensus 95 ~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~--------~~~~~~~~ 162 (541)
T 1v25_A 95 MGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRGELK----TVQHFVVMDEKAP--------EGYLAYEE 162 (541)
T ss_dssp TTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHGGGCS----SCCEEEESSSCCC--------TTCEEHHH
T ss_pred cCcEEEecCcccCHHHHHHHHHhCCCcEEEEChhHHHHHHHHHhhCC----CccEEEEecCCCC--------cccccHHH
Confidence 99999999999999999999999999999999877665555433332 4556666554321 12245665
Q ss_pred HHhhccccccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHH--HHHHhhCCCCCEEEEeccchhhhhhHHHHH
Q 046637 167 LLAIGKLREVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLA--AALFNEMGLMPTYLWCVPMFHCNGWCLTWA 244 (301)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~--~~~~~~~~~~~~~l~~~p~~h~~g~~~~~~ 244 (301)
+....... ....++++++|+|||||||.||||++||.++..+... ....+++.++|++++.+|++|.+|+...+.
T Consensus 163 ~~~~~~~~---~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~ 239 (541)
T 1v25_A 163 ALGEEADP---VRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNAWCLPYA 239 (541)
T ss_dssp HCCSCCCC---CCCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTTTTCCCTTCEEEECSCTTSHHHHTHHHH
T ss_pred HhhccCCc---ccCCCCCcEEEEECCCCCCCCcEeeeehHHHHHHHhhhhhcccccCCCCCEEEEeccchhhhHHHHHHH
Confidence 54332221 2356789999999999999999999999999876655 234567789999999999999999877788
Q ss_pred HHHhCCeEEeeC-CCCHHHHHHHHHhcCcceecCChHHHHHHHcCCCCcccccc
Q 046637 245 VAAQGGTNVCQR-TVNAKEIFDNITRHKVTHFGGAPTVLNMIANAPPVFENRFR 297 (301)
Q Consensus 245 ~l~~g~~~v~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~ 297 (301)
++..|+++++.+ .+++..+++.++++++|+++++|++++.|++.......+++
T Consensus 240 ~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~ 293 (541)
T 1v25_A 240 ATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTGHRLK 293 (541)
T ss_dssp HHHHTCEEEECTTCCSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHHTCCCS
T ss_pred HHhcCceEEeeCCCCCHHHHHHHHHhcCeeEEecchHHHHHHHhhhhccCCcch
Confidence 999999999986 47999999999999999999999999999876543333443
|
| >3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-42 Score=314.30 Aligned_cols=258 Identities=16% Similarity=0.173 Sum_probs=216.9
Q ss_pred CCHHHHHHHHhhhcCCccEEEECCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHhhhccceeee
Q 046637 14 LTPISFLERSAVVYRDRPSVVYGDVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAGAVLCT 93 (301)
Q Consensus 14 ~~~~~~l~~~~~~~~~~~al~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~ 93 (301)
|++.++|++.++++||++|+++.++++||+||.++++++|.+|.+.|+++||+|+++++|++++++++|||+++|++++|
T Consensus 1 m~l~~~l~~~a~~~p~~~A~~~~~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~e~~~~~la~~~~G~v~vp 80 (512)
T 3fce_A 1 MKLLEQIEKWAAETPDQTAFVWRDAKITYKQLKEDSDALAHWISSEYPDDRSPIMVYGHMQPEMIINFLGCVKAGHAYIP 80 (512)
T ss_dssp CCHHHHHHHHHHHSTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHHSTTCCCCEEEEESSCHHHHHHHHHHHHTTCCEEE
T ss_pred CcHHHHHHHHHHHCCCceEEEeCCceEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEe
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHhcCceEEEEcCCchhhHHHHHHHhccccCCCCceEEccCCCCCCcccccCCCCccHHHHHhhcc-
Q 046637 94 LNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVASSSGNLEYESLLAIGK- 172 (301)
Q Consensus 94 l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 172 (301)
++|.++.+++.++++.+++++++++...... ..+..+. .. ..+.+......
T Consensus 81 l~~~~~~~~l~~il~~~~~~~~i~~~~~~~~-------------~~~~~~~-~~--------------~~~~~~~~~~~~ 132 (512)
T 3fce_A 81 VDLSIPADRVQRIAENSGAKLLLSATAVTVT-------------DLPVRIV-SE--------------DNLKDIFFTHKG 132 (512)
T ss_dssp EETTSCHHHHHHHHHHSCCCEEEESSCCCSS-------------CCSSEEE-ET--------------HHHHHHHHHTTT
T ss_pred eCCCCcHHHHHHHHHhcCCCEEEecCccccc-------------cccccee-ch--------------hhhhhhcccccc
Confidence 9999999999999999999999998543211 1111111 00 11122111111
Q ss_pred -ccccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhhCCCCCEEEEeccchhhhhhHHHHHHHHhCCe
Q 046637 173 -LREVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPTYLWCVPMFHCNGWCLTWAVAAQGGT 251 (301)
Q Consensus 173 -~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~h~~g~~~~~~~l~~g~~ 251 (301)
.........++++++|+|||||||.||||++||.++..........+++.++|++++..|++|.+++..++.++..|++
T Consensus 133 ~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~ 212 (512)
T 3fce_A 133 NTPNPEHAVKGDENFYIIYTSGSTGNPKGVQITYNCLVSFTKWAVEDFNLQTGQVFLNQAPFSFDLSVMDIYPSLVTGGT 212 (512)
T ss_dssp CCCCGGGSCCTTSEEEEEEECC----CEEEEEEHHHHHHHHHHHHHHTTCCSSCEEEECSCTTSGGGHHHHHHHHHTTCE
T ss_pred cCCCccccCCCCCeEEEEECCCCCCCCceEEEehHHHHHHHHHHHHhcCCCCCCEEEEeCCccHhHHHHHHHHHHhCCCE
Confidence 1112234667899999999999999999999999999999888888999999999999999999998888999999999
Q ss_pred EEeeCC---CCHHHHHHHHHhcCcceecCChHHHHHHHcCCCCccccccCC
Q 046637 252 NVCQRT---VNAKEIFDNITRHKVTHFGGAPTVLNMIANAPPVFENRFRGR 299 (301)
Q Consensus 252 ~v~~~~---~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~~ 299 (301)
+++.+. +++..+++.++++++|++.++|++++.+++.+.....++++.
T Consensus 213 ~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l 263 (512)
T 3fce_A 213 LWAIDKDMIARPKDLFASLEQSDIQVWTSTPSFAEMCLMEASFSESMLPNM 263 (512)
T ss_dssp EEECCHHHHHSHHHHHHHHHHHCCCEEEECHHHHHHHTTSTTCSTTTSTTC
T ss_pred EEECCHHHhhCHHHHHHHHHHcCCcEEEecHHHHHHHHhhccccchhCccc
Confidence 999985 789999999999999999999999999998887776666543
|
| >3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-42 Score=316.89 Aligned_cols=263 Identities=21% Similarity=0.264 Sum_probs=225.9
Q ss_pred CCCCCCCHHHHHHHHhhhcCCccEEEECCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHhhhcc
Q 046637 9 ANYVPLTPISFLERSAVVYRDRPSVVYGDVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAG 88 (301)
Q Consensus 9 ~~~~~~~~~~~l~~~~~~~~~~~al~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G 88 (301)
.-|.++++.++|++.++ ||++|+++.++++||+||.++++++|+.|.+.|+++||+|+++++|++++++++|||+++|
T Consensus 22 ~~~~~~~l~~~~~~~a~--pd~~Av~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~V~l~~~~s~~~vva~lA~l~aG 99 (617)
T 3rg2_A 22 GYWQDLPLTDILTRHAA--SDSIAVIDGERQLSYRELNQAADNLACSLRRQGIKPGETALVQLGNVAELYITFFALLKLG 99 (617)
T ss_dssp TSCCCCCTTHHHHTTTT--CCSEEEEETTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHHT
T ss_pred CCCCcCCHHHHHHHhhC--CCCeEEecCCceEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHhcC
Confidence 35678999999999988 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeecCCCCCHHHHHHHHHhcCceEEEEcCCch-----hhHHHHHHHhccccCCCCceEEccCCCCCCcccccCCCCcc
Q 046637 89 AVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLL-----PIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVASSSGNLE 163 (301)
Q Consensus 89 ~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 163 (301)
++++|++|..+.+++.++++++++++++++.... ........... .++.+...+.... ..
T Consensus 100 ~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~-----------~~ 164 (617)
T 3rg2_A 100 VAPVLALFSHQRSELNAYASQIEPALLIADRQHALFSGDDFLNTFVTEHS----SIRVVQLLNDSGE-----------HN 164 (617)
T ss_dssp CEEEEECTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHHST----TCCEEEEETCCST-----------TB
T ss_pred eEEccCCccccHHHHHHHHhhcCceEEEecccccccccHHHHHHHhhcCC----ccceeeecccccc-----------cc
Confidence 9999999999999999999999999999998764 22233333322 4455555443321 33
Q ss_pred HHHHHhhccccccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhhCCCCCEEEEeccchhhhhhHH--
Q 046637 164 YESLLAIGKLREVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPTYLWCVPMFHCNGWCL-- 241 (301)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~h~~g~~~-- 241 (301)
+.+...............++++++|+|||||||.||||+++|.++..++......+++.+++++++..|++|.+++..
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~ 244 (617)
T 3rg2_A 165 LQDAINHPAEDFTATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEICQFTQQTRYLCAIPAAHNYAMSSPG 244 (617)
T ss_dssp HHHHHHSCCSSCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECSCTTSHHHHHSSH
T ss_pred hhhhhcccccccCCCCCCCCCeEEEEECCCcCCCCCEeehhHHHHHHHHHHHHHhcCCCCcceEEEeccchhhhhhhHHH
Confidence 444444333332334466789999999999999999999999999999998888899999999999999999999774
Q ss_pred HHHHHHhCCeEEeeCCCCHHHHHHHHHhcCcceecCChHHHHHHHcC
Q 046637 242 TWAVAAQGGTNVCQRTVNAKEIFDNITRHKVTHFGGAPTVLNMIANA 288 (301)
Q Consensus 242 ~~~~l~~g~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~ 288 (301)
++.+++.|+++++.+.+++..+++.++++++|++.++|+++..+++.
T Consensus 245 ~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~ 291 (617)
T 3rg2_A 245 SLGVFLAGGTVVLAADPSATLCFPLIEKHQVNVTALVPPAVSLWLQA 291 (617)
T ss_dssp HHHHHHHTCEEEECSSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHH
T ss_pred HHHHHHcCCEEEEeCCCCHHHHHHHHHHhCCcEEEcchHHHHHHHHh
Confidence 78899999999999999999999999999999999999999999874
|
| >2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.2e-42 Score=311.71 Aligned_cols=272 Identities=14% Similarity=0.096 Sum_probs=225.6
Q ss_pred CCHHH-HHHHHhhhcCCccEEEE--CCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHhhhccce
Q 046637 14 LTPIS-FLERSAVVYRDRPSVVY--GDVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAGAV 90 (301)
Q Consensus 14 ~~~~~-~l~~~~~~~~~~~al~~--~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~ 90 (301)
.++.+ +|.+.++++ |++|+++ .++++||+||.++++++|..|.+.|+++||+|+++++|++++++++|||+++|++
T Consensus 25 ~~l~~~~l~~~~~~~-~~~A~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~la~~~~Gav 103 (548)
T 2d1s_A 25 AGTQLRKYMERYAKL-GAIAFTNAVTGVDYSYAEYLEKSCCLGKALQNYGLVVDGRIALCSENCEEFFIPVIAGLFIGVG 103 (548)
T ss_dssp HHHHHHHHHHHHHHH-TCEEEEETTTCCEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTTHHHHHHHHHHTCE
T ss_pred CcHHHHHHHhhhccc-CCceEEEcCCCCEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHHHhhCCE
Confidence 47889 899999999 9999998 4689999999999999999999999999999999999999999999999999999
Q ss_pred eeecCCCCCHHHHHHHHHhcCceEEEEcCCchhhHHHHHHHhccccCCCCceEEccCCCCCCcccccCCCCccHHHHHhh
Q 046637 91 LCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVASSSGNLEYESLLAI 170 (301)
Q Consensus 91 ~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (301)
++|++|.++.+++.+++++++++++|++......+.......+ ....++.++.... ..+...++++...
T Consensus 104 ~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~-------~~~~~~~~~~~~~ 172 (548)
T 2d1s_A 104 VAPTNEIYTLRELVHSLGISKPTIVFSSKKGLDKVITVQKTVT----TIKTIVILDSKVD-------YRGYQCLDTFIKR 172 (548)
T ss_dssp EEEECTTSCHHHHHHHHHHHCCSEEEECTTTHHHHHHHHHHST----TCCEEEETTCSSC-------BTTBCBHHHHHHH
T ss_pred EeccCCCCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHhcCCC----CCCEEEEeCCccc-------ccccccHHHHHhc
Confidence 9999999999999999999999999999887766655544332 2455666543210 0122456666554
Q ss_pred cccc-ccCCCC------CCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHH---hhCCCCCEEEEeccchhhhhhH
Q 046637 171 GKLR-EVRRPK------DECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALF---NEMGLMPTYLWCVPMFHCNGWC 240 (301)
Q Consensus 171 ~~~~-~~~~~~------~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~---~~~~~~~~~l~~~p~~h~~g~~ 240 (301)
.... ...... .++++++|+|||||||.||||++||.++..+....... +++.++|++++..|++|.+|+.
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~ 252 (548)
T 2d1s_A 173 NTPPGFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHHGFGMF 252 (548)
T ss_dssp TSCTTCCGGGCCCCCCCTTTCEEEEECCSSCSSSCCCEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHH
T ss_pred CccccCCcccccccccCCCCCEEEEEeCCCCCCCCCEEEecHHHHHHHHHHhhchhhccCCCccceEEEeccHHHHHHHH
Confidence 3211 111111 23899999999999999999999999998887776655 5778899999999999999987
Q ss_pred H-HHHHHHhCCeEEeeCCCCHHHHHHHHHhcCcceecCChHHHHHHHcCCCCccccccC
Q 046637 241 L-TWAVAAQGGTNVCQRTVNAKEIFDNITRHKVTHFGGAPTVLNMIANAPPVFENRFRG 298 (301)
Q Consensus 241 ~-~~~~l~~g~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~ 298 (301)
. ++.++ .|+++++.+.+++..+++.++++++|+++++|++++.|++.+.....++++
T Consensus 253 ~~~~~~l-~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~ 310 (548)
T 2d1s_A 253 TTLGYLI-CGFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLFAILNKSELLNKYDLSN 310 (548)
T ss_dssp HHHHHHH-TTCEEEECCCCCHHHHHHHHHHTTEEEEEECHHHHHHHHHCSCGGGSCCTT
T ss_pred HHHHHHh-cCcEEEEcCCCCHHHHHHHHHHcCCcEEEecHHHHHHHHhCcccccccccc
Confidence 6 55666 999999999999999999999999999999999999999987766666654
|
| >1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-42 Score=312.28 Aligned_cols=249 Identities=24% Similarity=0.289 Sum_probs=207.2
Q ss_pred CCHHHHHHHHhhhcCCccEEEEC--CeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHhhhcccee
Q 046637 14 LTPISFLERSAVVYRDRPSVVYG--DVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAGAVL 91 (301)
Q Consensus 14 ~~~~~~l~~~~~~~~~~~al~~~--~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~ 91 (301)
+++.++|++.++++||++|+++. ++++||+||.++++++|+.|.+.|+++||+|+++++|++++++++|||+++|+++
T Consensus 2 ~tl~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~ 81 (504)
T 1t5h_X 2 QTVNEMLRRAATRAPDHCALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVP 81 (504)
T ss_dssp CCHHHHHHHHHHHCTTSEEEEETTTTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHHTCEE
T ss_pred CcHHHHHHHHHHhCCCceEEEEcCCCceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHhCcEE
Confidence 67999999999999999999998 8899999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCCCHHHHHHHHHhcCceEEEE--cCCchhhHHHHHHHhccccCCCCceEEccCCCCCCcccccCCCCccHHHHHh
Q 046637 92 CTLNTRHDSAMVSVLLRHSEAKIIFV--DYQLLPIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVASSSGNLEYESLLA 169 (301)
Q Consensus 92 v~l~~~~~~~~l~~~l~~~~~~~vi~--~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (301)
+|++|.++.+++.+++++++++++++ +.+....+ ..... .++ ++.+++. ..
T Consensus 82 vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~---~~~~~----~~~-~~~~~~~-------------------~~ 134 (504)
T 1t5h_X 82 ALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAI---FQSGS----GAR-IIFLGDL-------------------VR 134 (504)
T ss_dssp EEECTTSCHHHHHHHHHHTTCSEEEECC--CHHHHH---HHHCC----CCE-EEEGGGT-------------------EE
T ss_pred EecCCccChHHHHHHHhhcCCcEEEEecchhhhhhh---hhccc----cce-eEEecch-------------------hh
Confidence 99999999999999999999999999 65543322 01111 122 2222211 11
Q ss_pred hc-----cccccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhhC--CCCCEEEEeccchhhhhhH-H
Q 046637 170 IG-----KLREVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEM--GLMPTYLWCVPMFHCNGWC-L 241 (301)
Q Consensus 170 ~~-----~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~--~~~~~~l~~~p~~h~~g~~-~ 241 (301)
.. ..........++++++|+|||||||.||||++||.++..........+++ .+++++++.+|++|.+|+. .
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~ 214 (504)
T 1t5h_X 135 DGEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAV 214 (504)
T ss_dssp TTEECCCSCCCCCCCCCTTSEEEEEECCC---CCCEEEEEGGGHHHHHHHHHHTTCCCSSTTCEEEECSCTTSHHHHTTT
T ss_pred cCcccccCCccCCCCCCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHHhhCCCCCCCceEEeecchhhcchHHHH
Confidence 10 00111123567899999999999999999999999999888877777777 7889999999999999985 5
Q ss_pred HHHHHHhCCeEEeeCCCCHHHHHHHHHhcCcceecCChHHHHHHHcCC
Q 046637 242 TWAVAAQGGTNVCQRTVNAKEIFDNITRHKVTHFGGAPTVLNMIANAP 289 (301)
Q Consensus 242 ~~~~l~~g~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~ 289 (301)
++.++..|+++++.+.+++..+++.++++++|+++++|++++.|++.+
T Consensus 215 ~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~ 262 (504)
T 1t5h_X 215 LVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAA 262 (504)
T ss_dssp HHHHHHTTCEEEECSSCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHH
T ss_pred HHHHHHcCceEEeCCCCCHHHHHHHHHHhCCeEEEeChHHHHHHHhhh
Confidence 788999999999999999999999999999999999999999998764
|
| >1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-42 Score=317.95 Aligned_cols=284 Identities=19% Similarity=0.263 Sum_probs=224.3
Q ss_pred CCHHHHHHHHhhhcCCccEEEE------CCeeeeHHHHHHHHHHHHHHHH-hcCCCCCCEEEEEcCCCHHHHHHHHHhhh
Q 046637 14 LTPISFLERSAVVYRDRPSVVY------GDVQYTWKETHQRCVKLASGLA-HLGISPGDVVAALAPNVPAMYELHFGVPM 86 (301)
Q Consensus 14 ~~~~~~l~~~~~~~~~~~al~~------~~~~~Ty~el~~~~~~la~~L~-~~gv~~g~~V~i~~~n~~~~~~~~lA~~~ 86 (301)
.++.++|++.++++||++|+++ .++++||+||.+++.++|..|+ ++|+++||+|+++++|++++++++|||++
T Consensus 82 n~~~~~l~~~a~~~pd~~Al~~~~~~~~~~~~~TY~eL~~~v~~lA~~L~~~~Gv~~Gd~V~i~~~~~~e~v~a~lA~~~ 161 (663)
T 1ry2_A 82 NACYNCVDRHALKTPNKKAIIFEGDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLLAISR 161 (663)
T ss_dssp CHHHHHTHHHHTTCTTSEEEEEECSSTTCCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHHHHHHHHHHHH
T ss_pred cHHHHHHHHHhccCCCceEEEEEcCCCCceEEEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHHHH
Confidence 3567899999999999999998 3478999999999999999999 99999999999999999999999999999
Q ss_pred ccceeeecCCCCCHHHHHHHHHhcCceEEEEcCCchhh-----HHHHHHHhccccCCCCceEEccCCCCCCcccccCCCC
Q 046637 87 AGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPI-----AQGAFEILSKTSAKLPLLVLVPECGEPVSTVASSSGN 161 (301)
Q Consensus 87 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~-----~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 161 (301)
+|++++|+++.++.+++.+++++++++++|+++..... ............+.++.+++++....... .......
T Consensus 162 ~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~-~~~~~~~ 240 (663)
T 1ry2_A 162 IGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVLVYRKTNNPSV-AFHAPRD 240 (663)
T ss_dssp TTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHTTSCTTCCEEEEECSSCCSSC-CCCSSSE
T ss_pred cCCEEEeeCCCCCHHHHHHHHHhcCCeEEEEccccccCCcccchHHHHHHHHHhCCCCceEEEEecCCCCcc-ccCCCcc
Confidence 99999999999999999999999999999998765321 11111111111114566776654321000 0001122
Q ss_pred ccHHHHHhhccccccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHH-HHHHHhhCCCCCEEEEeccchhhhhhH
Q 046637 162 LEYESLLAIGKLREVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSL-AAALFNEMGLMPTYLWCVPMFHCNGWC 240 (301)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~-~~~~~~~~~~~~~~l~~~p~~h~~g~~ 240 (301)
..|.++..............++++++|+|||||||+||||+++|.+++.+.. .....+++.++|++++..|++|+.|..
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~ 320 (663)
T 1ry2_A 241 LDWATEKKKYKTYYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDTHQEDVFFTAGDIGWITGHT 320 (663)
T ss_dssp EEHHHHHTTSCSCCCCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHHSCCCSSCEEEECSCTTSHHHHH
T ss_pred ccHHHHHhhcCCCCCccccCCCCceEEEeccCCCCCCceEEEchhHHHHHHHHHHHHhcCCCCCcEEEEcCCcHHhhhhH
Confidence 4577766543332222345678999999999999999999999999876654 344567889999999999999999985
Q ss_pred -HHHHHHHhCCeEEeeCC----CCHHHHHHHHHhcCcceecCChHHHHHHHcCCC--CccccccC
Q 046637 241 -LTWAVAAQGGTNVCQRT----VNAKEIFDNITRHKVTHFGGAPTVLNMIANAPP--VFENRFRG 298 (301)
Q Consensus 241 -~~~~~l~~g~~~v~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~--~~~~~l~~ 298 (301)
.++.++..|+++++.+. +++..+++.|+++++|+++++|++++.|++... ..+.++++
T Consensus 321 ~~~~~~L~~G~t~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~~~~~~l~s 385 (663)
T 1ry2_A 321 YVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSYIENHSLKS 385 (663)
T ss_dssp HTTHHHHHHTSEEEEECSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCTTSSSSCCCTT
T ss_pred HHHHHHHHhCCEEEEECCCCCCCCHHHHHHHHHHcCCCEEEecHHHHHHHHhcCccccccCCcCc
Confidence 57899999999999864 589999999999999999999999999998765 34445554
|
| >4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-41 Score=307.75 Aligned_cols=262 Identities=19% Similarity=0.203 Sum_probs=219.6
Q ss_pred HHHHHHhhhcCCccEEEE---CCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHhhhccceeeec
Q 046637 18 SFLERSAVVYRDRPSVVY---GDVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAGAVLCTL 94 (301)
Q Consensus 18 ~~l~~~~~~~~~~~al~~---~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l 94 (301)
++|++.++++|+++++.. .++++||+||.++++++|+.|.+.|+++||+|+++++|++++++++|||+++|++++|+
T Consensus 4 ~l~~~~a~~~p~~~a~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga~~vpl 83 (503)
T 4fuq_A 4 NLFARLFDKLDDPHKLAIETAAGDKISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLATVRAGGVYLPL 83 (503)
T ss_dssp CHHHHHHSCCSCTTSEEEEETTCCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHTTCEEEEC
T ss_pred hHHHHHHHhCCCCceEEEecCCCcEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCcEEEec
Confidence 578899999999999884 66899999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCceEEEEcCCchhhHHHHHHHhccccCCCCceEEccCCCCCCcccccCCCCccHHHHHhhcccc
Q 046637 95 NTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVASSSGNLEYESLLAIGKLR 174 (301)
Q Consensus 95 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (301)
+|.++.+++.+++++++++++|++......+........ ..+..++.... ..+.+........
T Consensus 84 ~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~------~~~~~~~~~~~-----------~~~~~~~~~~~~~ 146 (503)
T 4fuq_A 84 NTAYTLHELDYFITDAEPKIVVCDPSKRDGIAAIAAKVG------ATVETLGPDGR-----------GSLTDAAAGASEA 146 (503)
T ss_dssp CTTCCHHHHHHHHHHHCCSEEEECGGGTTTTHHHHHHHT------CEEEECCTTSC-----------SHHHHHHHTSCSC
T ss_pred CCCCCHHHHHHHHHhcCCcEEEECchhhHHHHHHHhhcC------ceEEEecCCcc-----------cccchhhhcCCCC
Confidence 999999999999999999999999877666655544332 23333332211 1222222222222
Q ss_pred ccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhhCCCCCEEEEeccchhhhhhHH-HHHHHHhCCeEE
Q 046637 175 EVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPTYLWCVPMFHCNGWCL-TWAVAAQGGTNV 253 (301)
Q Consensus 175 ~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~h~~g~~~-~~~~l~~g~~~v 253 (301)
.......++++++|+|||||||.||||+++|.++..+.......+++.++|++++.+|++|.+|+.. .+.+++.|++++
T Consensus 147 ~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~~ 226 (503)
T 4fuq_A 147 FATIDRGADDLAAILYTSGTTGRSKGAMLSHDNLASNSLTLVDYWRFTPDDVLIHALPIYHTHGLFVASNVTLFARGSMI 226 (503)
T ss_dssp CCCCCCCTTSEEEEEECC--CCSCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCSSSHCCCCCCHHHHHHTTCEEE
T ss_pred cCcCCCCCCCeEEEEECCCcccCCeEEEEeHHHHHHHHHHHHHHhCCCCCCEEEEeCChHHHHHHHHHHHHHHHhCCEEE
Confidence 2333567899999999999999999999999999999998888899999999999999999999764 678899999999
Q ss_pred eeCCCCHHHHHHHHHhcCcceecCChHHHHHHHcCCCCccccccC
Q 046637 254 CQRTVNAKEIFDNITRHKVTHFGGAPTVLNMIANAPPVFENRFRG 298 (301)
Q Consensus 254 ~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~ 298 (301)
+.+.+++..+++.++ ++|+++++|+++..|++.+...+.++++
T Consensus 227 ~~~~~~~~~~~~~i~--~~t~~~~~P~~~~~l~~~~~~~~~~~~~ 269 (503)
T 4fuq_A 227 FLPKFDPDKILDLMA--RATVLMGVPTFYTRLLQSPRLTKETTGH 269 (503)
T ss_dssp ECSSCCHHHHHHHHT--TCCEEEECHHHHHHHHTCTTCSTTTTTT
T ss_pred EcCCCCHHHHHHHHh--hcCEEEEHHHHHHHHHhCCCccccchhh
Confidence 999999999999998 8999999999999999988776666554
|
| >3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-41 Score=308.36 Aligned_cols=267 Identities=18% Similarity=0.174 Sum_probs=221.1
Q ss_pred CCCCCCCHHHHHHHHhhh-----cCCccEEEEC-----CeeeeHHHHHHHHHHHHHHHHhc-CCCCCCEEEEEcCCCHHH
Q 046637 9 ANYVPLTPISFLERSAVV-----YRDRPSVVYG-----DVQYTWKETHQRCVKLASGLAHL-GISPGDVVAALAPNVPAM 77 (301)
Q Consensus 9 ~~~~~~~~~~~l~~~~~~-----~~~~~al~~~-----~~~~Ty~el~~~~~~la~~L~~~-gv~~g~~V~i~~~n~~~~ 77 (301)
.+.....+.++|++.+++ +||++|+++. ++++||+||.++++++|..|.+. |+++||+|+++++|++++
T Consensus 33 ~~~~~~~~~~~l~~~a~~~~a~~~p~~~al~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~~Gv~~gd~V~i~~~n~~e~ 112 (570)
T 3c5e_A 33 VPAKFNFASDVLDHWADMEKAGKRPPSPALWWVNGKGKELMWNFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVPEW 112 (570)
T ss_dssp CCSBCCHHHHTHHHHHHHHHTTSSCCCEEEEEECSSSCEEEEEHHHHHHHHHHHHHHHHTTTCCCTTCEEEEECCSCHHH
T ss_pred CCccccHHHHHHHHHHhhccccCCCCceEEEEEcCCCceeEEeHHHHHHHHHHHHHHHHHccCCCCCCEEEEEcCCCHHH
Confidence 333334457999999998 9999999982 37899999999999999999998 999999999999999999
Q ss_pred HHHHHHhhhccceeeecCCCCCHHHHHHHHHhcCceEEEEcCCchhhHHHHHHHhccccCCCCceEEccCCCCCCccccc
Q 046637 78 YELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVAS 157 (301)
Q Consensus 78 ~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 157 (301)
++++|||+++|++++|++|.++.+++.+++++++++++|++.+....+.......+ .++.++.++....
T Consensus 113 ~~~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~------- 181 (570)
T 3c5e_A 113 WLVILGCIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAGDEVIQEVDTVASECP----SLRIKLLVSEKSC------- 181 (570)
T ss_dssp HHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEETTTHHHHHHHGGGCT----TCCEEEEESSSCC-------
T ss_pred HHHHHHHHHcCeEEEecCCCCCHHHHHHHHHhcCCeEEEechHHHHHHHHHhhcCC----ceeEEEEecccCc-------
Confidence 99999999999999999999999999999999999999999887666555443333 4555665553211
Q ss_pred CCCCccHHHHHhhccccccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHH--HHHHHHHHhhCCCCCEEEEeccchh
Q 046637 158 SSGNLEYESLLAIGKLREVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYL--NSLAAALFNEMGLMPTYLWCVPMFH 235 (301)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~--~~~~~~~~~~~~~~~~~l~~~p~~h 235 (301)
.+...+.++..............++++++|+|||||||.||||+++|. ++. ..... ..+++.++|++++..|++|
T Consensus 182 -~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~-~~~~~~~~~~-~~~~~~~~d~~~~~~p~~~ 258 (570)
T 3c5e_A 182 -DGWLNFKKLLNEASTTHHCVETGSQEASAIYFTSGTSGLPKMAEHSYS-SLGLKAKMDA-GWTGLQASDIMWTISDTGW 258 (570)
T ss_dssp -TTSEEHHHHHHHSCSCCCCCCCBTTSEEEEEECCCSSSSCCEEEEEHH-HHHHHHHHHT-TTTSCCTTCEEEECCCTTS
T ss_pred -cccccHHHHhhcccccccccCCCCCCcEEEEECCCCCCCCCEEEechH-HHHhhhhhhh-hhcCCCCCceEEEcCchHH
Confidence 223557766654433322234667899999999999999999999999 544 33333 5667889999999999999
Q ss_pred hhhhH-HHHHHHHhCCeEEeeC--CCCHHHHHHHHHhcCcceecCChHHHHHHHcCC
Q 046637 236 CNGWC-LTWAVAAQGGTNVCQR--TVNAKEIFDNITRHKVTHFGGAPTVLNMIANAP 289 (301)
Q Consensus 236 ~~g~~-~~~~~l~~g~~~v~~~--~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~ 289 (301)
.+|+. .++.++..|+++++.+ .+++..+++.++++++|+++++|++++.|++..
T Consensus 259 ~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~ 315 (570)
T 3c5e_A 259 ILNILCSLMEPWALGACTFVHLLPKFDPLVILKTLSSYPIKSMMGAPIVYRMLLQQD 315 (570)
T ss_dssp HHHHHHTTHHHHHHTCEEEEECCSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHhCceEEEecCCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhcc
Confidence 99987 4788999999999986 689999999999999999999999999999863
|
| >2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-41 Score=309.50 Aligned_cols=268 Identities=19% Similarity=0.209 Sum_probs=213.9
Q ss_pred CHHHHHHHHhhhcCCccEEEECCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHhhhccceeeec
Q 046637 15 TPISFLERSAVVYRDRPSVVYGDVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAGAVLCTL 94 (301)
Q Consensus 15 ~~~~~l~~~~~~~~~~~al~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l 94 (301)
++.++|++.++ +||++|+++.++++||+||.++++++|+.|.+.|+++||+|+++++|++++++++|||+++|++++|+
T Consensus 25 ~~~~~l~~~~~-~p~~~A~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~vpl 103 (529)
T 2v7b_A 25 FAAYLFRLNET-RAGKTAYIDDTGSTTYGELEERARRFASALRTLGVHPEERILLVMLDTVALPVAFLGALYAGVVPVVA 103 (529)
T ss_dssp HHHHHHHHTGG-GTTSEEEECSSCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSTHHHHHHHHHHHHTCEEEEC
T ss_pred HHHHHHHhhhc-cCCceEEEeCCCCccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCceEEec
Confidence 47899999999 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCceEEEEcCCchhhHHHHHHHhccccCCC-CceEEccCCCCCCcccccCCCCccHHHHHhhccc
Q 046637 95 NTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKL-PLLVLVPECGEPVSTVASSSGNLEYESLLAIGKL 173 (301)
Q Consensus 95 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (301)
++.++.+++.+++++++++++|++......+.+...... .. ..++.++..... ......++++......
T Consensus 104 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~ 173 (529)
T 2v7b_A 104 NTLLTPADYVYMLTHSHARAVIASGALVQNVTQALESAE----HDGCQLIVSQPRESE------PRLAPLFEELIDAAAP 173 (529)
T ss_dssp CTTCCHHHHHHHHHHHTCSEEEEEGGGHHHHHHHHHCC-------CCEEEEECC------------CCCBHHHHHHTSCC
T ss_pred CcccCHHHHHHHHhccCCeEEEechhhhhHHHHHHhhcc----ccCceEEEecccccc------cccccchhhhhccCCC
Confidence 999999999999999999999999877655544433222 23 344443322100 0011346666553332
Q ss_pred cccCCCCCCCCceEEEeccCCCCCCCeeeechHHH-HHHHHHHHHHhhCCCCCEEEEeccchhhhhhHH-HHHHHHhCCe
Q 046637 174 REVRRPKDECDPIALNYTSGTTSSPKGVICSHRGA-YLNSLAAALFNEMGLMPTYLWCVPMFHCNGWCL-TWAVAAQGGT 251 (301)
Q Consensus 174 ~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l-~~~~~~~~~~~~~~~~~~~l~~~p~~h~~g~~~-~~~~l~~g~~ 251 (301)
........++++++|+|||||||.||||++||.++ ..........+++.++|++++..|++|.+|+.. ++.++..|++
T Consensus 174 ~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~ 253 (529)
T 2v7b_A 174 AAKAAATGCDDIAFWLYSSGSTGKPKGTVHTHANLYWTAELYAKPILGIAENDVVFSAAKLFFAYGLGNGLTFPLSVGAT 253 (529)
T ss_dssp CSSCCCCCTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHTCCCCCCCCTTCEEEESSCTTSHHHHHHHTHHHHHHTCE
T ss_pred cccccCCCCCCeEEEEECCCCCCCCceEEEEhhHHHHHHHHHhhhccCCCCCcEEEEeecHHHHHHHHHHHHHHHhcCcE
Confidence 22223466789999999999999999999999998 555544445567889999999999999999875 6778999999
Q ss_pred EEee-CCCCHHHHHHHHHhcCcceecCChHHHHHHHcCCCCcc
Q 046637 252 NVCQ-RTVNAKEIFDNITRHKVTHFGGAPTVLNMIANAPPVFE 293 (301)
Q Consensus 252 ~v~~-~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~ 293 (301)
+++. +.+++..+++.++++++|+++++|+++..+++.+....
T Consensus 254 ~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~ 296 (529)
T 2v7b_A 254 AILMAERPTADAIFARLVEHRPTVFYGVPTLYANMLVSPNLPA 296 (529)
T ss_dssp EECCCSCCCHHHHHHHHHHSCCSEEEECHHHHHHHHTCTTCCC
T ss_pred EEEecCCCCHHHHHHHHHHhCCEEEEecHHHHHHHHhCccccc
Confidence 9988 67899999999999999999999999999998765443
|
| >1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-41 Score=317.12 Aligned_cols=280 Identities=18% Similarity=0.260 Sum_probs=223.7
Q ss_pred CHHHHHHHHhhhcCCccEEEE------CCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHhhhcc
Q 046637 15 TPISFLERSAVVYRDRPSVVY------GDVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAG 88 (301)
Q Consensus 15 ~~~~~l~~~~~~~~~~~al~~------~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G 88 (301)
.+.++|+++++++||++|+++ .++++||+||.++++++|+.|+++|+++||+|+++++|++++++++|||+++|
T Consensus 77 ~~~~~l~~~a~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~~~~G 156 (652)
T 1pg4_A 77 LAANCLDRHLQENGDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIG 156 (652)
T ss_dssp HHHHHTGGGHHHHTTSEEEEEECSSTTCEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccCCCceEEEEEcCCCCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHcC
Confidence 467889999999999999998 23789999999999999999999999999999999999999999999999999
Q ss_pred ceeeecCCCCCHHHHHHHHHhcCceEEEEcCCchh---------hHHHHHHHhccccCCCCceEEccCCCCCCcccccCC
Q 046637 89 AVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLP---------IAQGAFEILSKTSAKLPLLVLVPECGEPVSTVASSS 159 (301)
Q Consensus 89 ~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~---------~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 159 (301)
++++|+++.++.+++.+++++++++++|+++.... .+.+.....+. ..++.+++++...... .....
T Consensus 157 av~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~vi~~~~~~~~~--~~~~~ 232 (652)
T 1pg4_A 157 AVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNV--TSVEHVIVLKRTGSDI--DWQEG 232 (652)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHTCSEEEEESEEEETTEEEESHHHHHHHHTSTTC--CSCCEEEEECSSCCCC--CCCBT
T ss_pred cEEEecCCCCCHHHHHHHHHhcCCCEEEEcCccccCCcccchHHHHHHHHhcCCc--CCCCEEEEEeCCCCcc--cccCC
Confidence 99999999999999999999999999999876432 22222221110 0345666665432110 00011
Q ss_pred CCccHHHHHhhccccccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHH-HHHHHhhCCCCCEEEEeccchhhhh
Q 046637 160 GNLEYESLLAIGKLREVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSL-AAALFNEMGLMPTYLWCVPMFHCNG 238 (301)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~-~~~~~~~~~~~~~~l~~~p~~h~~g 238 (301)
....|.++..............++++++|+|||||||.||||+++|.+++.+.. .....+++.++|++++..|++|+.|
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~g 312 (652)
T 1pg4_A 233 RDLWWRDLIEKASPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVTG 312 (652)
T ss_dssp TEEEHHHHHTTSCSCCCCCCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHH
T ss_pred CceeHHHHHhhcCCCCCccccCCCCCEEEEeccCCCCCCceEEECchHHHHHHHHHHHHhcCCCCCCEEEEccCCeeeec
Confidence 224577776654332223345678999999999999999999999999887664 4455678899999999999999999
Q ss_pred hH-HHHHHHHhCCeEEeeCC----CCHHHHHHHHHhcCcceecCChHHHHHHHcCCC--CccccccC
Q 046637 239 WC-LTWAVAAQGGTNVCQRT----VNAKEIFDNITRHKVTHFGGAPTVLNMIANAPP--VFENRFRG 298 (301)
Q Consensus 239 ~~-~~~~~l~~g~~~v~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~--~~~~~l~~ 298 (301)
+. .++.++..|+++++.+. +++..+++.|+++++|+++++|++++.|++... ....++++
T Consensus 313 ~~~~~~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~s 379 (652)
T 1pg4_A 313 HSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSS 379 (652)
T ss_dssp HHHTTHHHHHTTCEEEEECSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGGGTTTCCCTT
T ss_pred hHHHHHHHHHcCceEEEECCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCccccccCCcCc
Confidence 85 57899999999999874 589999999999999999999999999998754 33344544
|
| >3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-42 Score=311.74 Aligned_cols=271 Identities=17% Similarity=0.170 Sum_probs=208.4
Q ss_pred cccCCCCCCCCHHHHHHHHhhhcCCccEEEECC---------eeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCH
Q 046637 5 IRCSANYVPLTPISFLERSAVVYRDRPSVVYGD---------VQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVP 75 (301)
Q Consensus 5 ~~~~~~~~~~~~~~~l~~~~~~~~~~~al~~~~---------~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~ 75 (301)
+....+++.+++.++|++.++++||++|+++.+ +++||+||.++++++|+.|.+.|+ +||+|+++++|++
T Consensus 15 ~~~~~~~~~~tl~~~l~~~a~~~pd~~Al~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~ 93 (480)
T 3t5a_A 15 VPRGSHMSVRSLPAALRACARLQPHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSRCGS-TGDRVVISAPQGL 93 (480)
T ss_dssp ---------CCHHHHHHHHHHHSTTSEEEEEEETTTCTTCEEEEEEHHHHHHHHHHHHHHHTTSSC-TTCEEEEECCSSH
T ss_pred CcccCCCCcccHHHHHHHHHHhCCCCceEEEecccCCCCCceEEEcHHHHHHHHHHHHHHHHhcCC-CCCEEEEEcCCcH
Confidence 344566788999999999999999999999865 899999999999999999999996 9999999999999
Q ss_pred HHHHHHHHhhhccceeeecCC---CCCHHHHHHHHHhcCceEEEEcCCchhhHHHHHHHhccccCCCCceEEccCCCCCC
Q 046637 76 AMYELHFGVPMAGAVLCTLNT---RHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGEPV 152 (301)
Q Consensus 76 ~~~~~~lA~~~~G~~~v~l~~---~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 152 (301)
++++++|||+++|++++|+++ ..+.+++.+++++++++++|++......+.+........ ....++.++....
T Consensus 94 e~~~~~lA~~~~G~v~vpl~~~~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~-- 169 (480)
T 3t5a_A 94 EYVVAFLGALQAGRIAVPLSVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQHVARRPGE--SPPSIIEVDLLDL-- 169 (480)
T ss_dssp HHHHHHHHHHHTTCEEEEECSCCSCTTCCHHHHHHHHHCCSEEEECTTTHHHHHHTCC--------CCEEEEGGGSCT--
T ss_pred HHHHHHHHHHHhCcEEEeeCCCCccchHHHHHHHHHhCCCCEEEeChhHHHHHHHHHhccccc--cccceeEeccccc--
Confidence 999999999999999999999 778999999999999999999988766554433222110 1123444332211
Q ss_pred cccccCCCCccHHHHHhhccccccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhhCCC------CCE
Q 046637 153 STVASSSGNLEYESLLAIGKLREVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGL------MPT 226 (301)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~------~~~ 226 (301)
............++++++|+|||||||.||||++||.++..++......+.+.. +++
T Consensus 170 -----------------~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~d~ 232 (480)
T 3t5a_A 170 -----------------DAPNGYTFKEDEYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGYFADTDGIPPPNSA 232 (480)
T ss_dssp -----------------TCC---CCCCSSCCSEEEEECC------CCCEEEEHHHHHHHHHHHHHHHCTTTTTCCCTTEE
T ss_pred -----------------ccccCCCCCCCCCCceEEEEecCCCCCCCcEEEEeHHHHHHHHHHHHHHhccccccCCCCCCe
Confidence 000111223466789999999999999999999999999999888888887777 899
Q ss_pred EEEeccchhhhhhHH-HHHHHHhCCeEEeeCCC----CHHHHHHHHHhcCcceecCChHHHHHHHcC----CCCcccccc
Q 046637 227 YLWCVPMFHCNGWCL-TWAVAAQGGTNVCQRTV----NAKEIFDNITRHKVTHFGGAPTVLNMIANA----PPVFENRFR 297 (301)
Q Consensus 227 ~l~~~p~~h~~g~~~-~~~~l~~g~~~v~~~~~----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~----~~~~~~~l~ 297 (301)
+++.+|++|.+|+.. ++.++..|+++++.+.+ ++..+++.++++++| +.++|+++..++.. +.....+++
T Consensus 233 ~l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t-~~~~p~~~~~l~~~~~~~~~~~~~~l~ 311 (480)
T 3t5a_A 233 LVSWLPFYHDMGLVIGICAPILGGYPAVLTSPVSFLQRPARWMHLMASDFHA-FSAAPNFAFELAARRTTDDDMAGRDLG 311 (480)
T ss_dssp EEECCCTTSTTHHHHHTHHHHHHTCCEEECCHHHHHHCTHHHHHHTTSSSEE-EEEECHHHHHHHHHHCCTGGGTTCCCT
T ss_pred EEEeCCCcCccHHHHHHHHHHHcCCceEEECHHHHHHCHHHHHHHHHhhcee-EeeChHHHHHHHHhhcCcccccccchh
Confidence 999999999999764 78899999999998753 899999999999999 88899998888763 333444554
Q ss_pred C
Q 046637 298 G 298 (301)
Q Consensus 298 ~ 298 (301)
+
T Consensus 312 ~ 312 (480)
T 3t5a_A 312 N 312 (480)
T ss_dssp T
T ss_pred h
Confidence 4
|
| >3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-42 Score=312.29 Aligned_cols=273 Identities=17% Similarity=0.160 Sum_probs=211.8
Q ss_pred CCHHHHHHHHhhhcCCccEEEECCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHhhhccceeee
Q 046637 14 LTPISFLERSAVVYRDRPSVVYGDVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAGAVLCT 93 (301)
Q Consensus 14 ~~~~~~l~~~~~~~~~~~al~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~ 93 (301)
|++.++|+++++++||++|+++.++++||+||.++++++|..|.+. +||+|+++++|+++++++++||+++|++++|
T Consensus 1 mtl~~~l~~~a~~~pd~~Al~~~~~~~Ty~eL~~~~~~lA~~L~~~---~gd~V~i~~~n~~e~~~~~lA~~~~Gav~vp 77 (501)
T 3ipl_A 1 MSLDFWLYKQAQQNGHHIAITDGQESYTYQNLYCEASLLAKRLKAY---QQSRVGLYIDNSIQSIILIHACWLANIEIAM 77 (501)
T ss_dssp --CCCHHHHHHHHHTTSEEEECSSCEEEHHHHHHHHHHHHHHHHTT---CCSEEEEECCSSHHHHHHHHHHHHTTCEEEE
T ss_pred CCHHHHHHHHHHhcCCceEEEeCCcEEEHHHHHHHHHHHHHHHHHc---CCCEEEEEcCCCHHHHHHHHHHHHcCCEEEe
Confidence 5778899999999999999999999999999999999999999987 8999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHhcCceEEEEcCCchhhHHHHHHHhccccCCCCceEEccCCCCCCcccccCCCCccHHHHHhhccc
Q 046637 94 LNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVASSSGNLEYESLLAIGKL 173 (301)
Q Consensus 94 l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (301)
+++.++.+++.++++.++++++|++............ .. .+..+......................+........
T Consensus 78 l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (501)
T 3ipl_A 78 INTRLTPNEMTNQMRSIDVQLIFCTLPLELRGFQIVS-LD----DIEFAGRDITTNGLLDNTMGIQYDTSNETVVPKESP 152 (501)
T ss_dssp CCTTSCHHHHHHHHHHTTCCEEEESSCCCCTTSEEEE-TT----C--------------------------------CCH
T ss_pred cCccCCHHHHHHHHHhcCCCEEEEccccccccccccc-cc----cceeeeeecccccccccccccccccchhhccccCCc
Confidence 9999999999999999999999998765433211000 00 111111000000000000000000001111111111
Q ss_pred c-ccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhhCCCCCEEEEeccchhhhhhHHHHHHHHhCCeE
Q 046637 174 R-EVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPTYLWCVPMFHCNGWCLTWAVAAQGGTN 252 (301)
Q Consensus 174 ~-~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~h~~g~~~~~~~l~~g~~~ 252 (301)
. .......++++++|+|||||||.||||++||.++..........+++.+++++++..|++|.+|+..++.++..|+++
T Consensus 153 ~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~ 232 (501)
T 3ipl_A 153 SNILNTSFNLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKESLGFDRDTNWLSVLPIYHISGLSVLLRAVIEGFTV 232 (501)
T ss_dssp HHHTCCCCCTTSEEEEEECCTTTSCCCEEEEEHHHHHHHHHHHHHHTCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEE
T ss_pred ccccccCCCCCCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHHhhCCCccCEEEEeCcHHHHHHHHHHHHHHHcCceE
Confidence 1 122346789999999999999999999999999999998888889999999999999999999998889999999999
Q ss_pred EeeCCCCHHHHHHHHHhcCcceecCChHHHHHHHcCCCCccc
Q 046637 253 VCQRTVNAKEIFDNITRHKVTHFGGAPTVLNMIANAPPVFEN 294 (301)
Q Consensus 253 v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~ 294 (301)
++.+.+++..+++.++++++|+++++|++++.|++.......
T Consensus 233 ~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~ 274 (501)
T 3ipl_A 233 RIVDKFNAEQILTMIKNERITHISLVPQTLNWLMQQGLHEPY 274 (501)
T ss_dssp EECSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHHHTCCSCT
T ss_pred EeCCCCCHHHHHHHHHHcCCcEEEchHHHHHHHHhcCCCCcC
Confidence 999999999999999999999999999999999987655443
|
| >3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-41 Score=307.33 Aligned_cols=273 Identities=14% Similarity=0.080 Sum_probs=226.2
Q ss_pred CCCHH-HHHHHHhhhcCCccEEEE-----CCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHhhh
Q 046637 13 PLTPI-SFLERSAVVYRDRPSVVY-----GDVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPM 86 (301)
Q Consensus 13 ~~~~~-~~l~~~~~~~~~~~al~~-----~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~ 86 (301)
..|+. ++|++.++++||++|+++ .++.+||+||.++++++|..|++.|+++||+|+++++|++++++++|||++
T Consensus 54 ~~n~~~~~l~~~a~~~pd~~Al~~~~~~g~~~~~Ty~eL~~~~~~~A~~L~~~Gv~~Gd~V~l~~~~~~e~~~~~lA~~~ 133 (580)
T 3etc_A 54 NFNFAYDVVDVYARDSPEKLAMIWCDDYGNEKIFTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRYDFWYCMLGLHK 133 (580)
T ss_dssp SCCHHHHTHHHHHHHCTTCEEEEEEESSSCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECTTCTHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHhhCCCCEEEEEEcCCCCEeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHh
Confidence 34555 999999999999999997 236899999999999999999999999999999999999999999999999
Q ss_pred ccceeeecCCCCCHHHHHHHHHhcCceEEEEcCCch--hhHHHHHHHhccccCCC-CceEEccCCCCCCcccccCCCCcc
Q 046637 87 AGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLL--PIAQGAFEILSKTSAKL-PLLVLVPECGEPVSTVASSSGNLE 163 (301)
Q Consensus 87 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~--~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~ 163 (301)
+|++++|++|.++.+++.+++++++++++|++.+.. ..+.+.....+ .+ ..++.++... ..++..
T Consensus 134 ~Gav~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~--------~~~~~~ 201 (580)
T 3etc_A 134 LGAIAVPATHMLKTRDIVYRIEKAGLKMIVCIAEDDVPEQVDEAHAECG----DIPLKKAKVGGDV--------LEGWID 201 (580)
T ss_dssp HTCEEEECCTTCCHHHHHHHHHHHTCCEEEEESSTTHHHHHHHHHHHHC----SCCCEEEEESSSC--------CTTCEE
T ss_pred CCEEEEeCCccCCHHHHHHHHHhcCCCEEEEecchhHHHHHHHHhhhCC----CcceEEEEeCCcc--------cccccc
Confidence 999999999999999999999999999999988765 55555555544 34 4445544321 134466
Q ss_pred HHHHHhhcccccc-C---CCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhhCCCCCEEEEeccchhhhhh
Q 046637 164 YESLLAIGKLREV-R---RPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPTYLWCVPMFHCNGW 239 (301)
Q Consensus 164 ~~~~~~~~~~~~~-~---~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~h~~g~ 239 (301)
+.+.......... . ....++++++|+|||||||.||||+++|.+++..........++.+++++++..|++|..++
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (580)
T 3etc_A 202 FRKELEESSPIFERPTGEVSTKNEDICLVYFSSGTAGFPKMVEHDNTYPLGHILTAKYWQNVEDDGLHYTVADSGWGKCV 281 (580)
T ss_dssp HHHHHHHSCSCCCCCCGGGSCCTTSEEEEEEECCSSSSCEEEEEETTHHHHHHHHHHTTSCCCTTCEEEECCCTTSTHHH
T ss_pred HHHHHhhCCcccccCccccCCCCCCcEEEEEeCCCCCCccEEEeccHHHHHHHHHHHHhhCCCCCceEEEeCChHHHHHH
Confidence 7776655444311 1 24678999999999999999999999999998877766666788899999999999999887
Q ss_pred HH-HHHHHHhCCeEEee--CCCCHHHHHHHHHhcCcceecCChHHHHHHHcCCCCccccccC
Q 046637 240 CL-TWAVAAQGGTNVCQ--RTVNAKEIFDNITRHKVTHFGGAPTVLNMIANAPPVFENRFRG 298 (301)
Q Consensus 240 ~~-~~~~l~~g~~~v~~--~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~ 298 (301)
.. ++.++..|+++++. +.+++..+++.++++++|+++++|++++.|++. .....++++
T Consensus 282 ~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~-~~~~~~l~~ 342 (580)
T 3etc_A 282 WGKLYGQWIAGCAVFVYDYDRFEAKNMLEKASKYGVTTFCAPPTIYRFLIKE-DLSHYNFST 342 (580)
T ss_dssp HHTTHHHHHTTCEEEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTS-CC---CCTT
T ss_pred HHHHHHHHhCCcEEEEecCCCCCHHHHHHHHHHHCCeEEEccHHHHHHHHhc-ccccCCCcc
Confidence 64 78889999999887 578999999999999999999999999999986 334445543
|
| >3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-41 Score=304.93 Aligned_cols=256 Identities=15% Similarity=0.139 Sum_probs=220.0
Q ss_pred CCHHHHHHHHhhhcCCccEEEECCeeeeHHHHHHHHHHHHHHHHhc-CCCCCCEEEEEcCCCHHHHHHHHHhhhccceee
Q 046637 14 LTPISFLERSAVVYRDRPSVVYGDVQYTWKETHQRCVKLASGLAHL-GISPGDVVAALAPNVPAMYELHFGVPMAGAVLC 92 (301)
Q Consensus 14 ~~~~~~l~~~~~~~~~~~al~~~~~~~Ty~el~~~~~~la~~L~~~-gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v 92 (301)
|++.++|+++++++||++|+++.++++||+||.++++++|..|.+. |.++|++|+++++|++++++++|||+++|++++
T Consensus 1 m~l~~~l~~~a~~~p~~~Al~~~~~~~Ty~eL~~~~~~~A~~L~~~~~~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v 80 (511)
T 3e7w_A 1 MKLLHAIQTHAETYPQTDAFRSQGQSLTYQELWEQSDRAAAAIQKRISGEKKSPILVYGHMEPHMIVSFLGSVKAGHPYI 80 (511)
T ss_dssp CCHHHHHHHHHHHSTTSEEEEETTEEEEHHHHHHHHHHHHHHHTTTSCSSSCCCEEEEESSCHHHHHHHHHHHHHTCCEE
T ss_pred CcHHHHHHHHHHHCCCCeEEEcCCceeeHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEecCCHHHHHHHHHHHHhCCEEE
Confidence 6899999999999999999999999999999999999999999985 889999999999999999999999999999999
Q ss_pred ecCCCCCHHHHHHHHHhcCceEEEEcCCchhhHHHHHHHhccccCCCCceEEccCCCCCCcccccCCCCccHHHHHhhcc
Q 046637 93 TLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVASSSGNLEYESLLAIGK 172 (301)
Q Consensus 93 ~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (301)
|+++.++.+++.+++++++++++|++...... .... ......+.++.....
T Consensus 81 pl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~-------------~~~~----------------~~~~~~~~~~~~~~~ 131 (511)
T 3e7w_A 81 PVDLSIPSERIAKIIESSGAELLIHAAGLSID-------------AVGQ----------------QIQTVSAEELLENEG 131 (511)
T ss_dssp EEETTSCHHHHHHHHHHHTCCEEEESSSCCTT-------------CCCC----------------SSCEEEHHHHHTSCS
T ss_pred ecCCCChHHHHHHHHHhCCCCEEEecccccch-------------hccc----------------ccceecHhhhhcccc
Confidence 99999999999999999999999997543211 0000 000123334333222
Q ss_pred cc-ccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhhCCCCCEEEEeccchhhhhhHHHHHHHHhCCe
Q 046637 173 LR-EVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPTYLWCVPMFHCNGWCLTWAVAAQGGT 251 (301)
Q Consensus 173 ~~-~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~h~~g~~~~~~~l~~g~~ 251 (301)
.. .......++++++|+|||||||.||||++||.++..........+++..++++++..|++|.+++..++.++..|++
T Consensus 132 ~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~ 211 (511)
T 3e7w_A 132 GSVSQDQWVKEHETFYIIYTSGSTGNPKGVQISAANLQSFTDWICADFPVSGGKIFLNQAPFSFDLSVMDLYPCLQSGGT 211 (511)
T ss_dssp CCCCGGGSCCTTSEEEEEEECCTTSSCEEEEEEHHHHHHHHHHHHHHSTTTTTCEEEECSCTTSTHHHHHHHHHHHTTCE
T ss_pred CCccccccCCCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhcCCCccceEEEeCCccHHHHHHHHHHHHhcCCE
Confidence 22 22223567899999999999999999999999999998888888899999999999999999998888999999999
Q ss_pred EEeeCC---CCHHHHHHHHHhcCcceecCChHHHHHHHcCCCCccccccC
Q 046637 252 NVCQRT---VNAKEIFDNITRHKVTHFGGAPTVLNMIANAPPVFENRFRG 298 (301)
Q Consensus 252 ~v~~~~---~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~ 298 (301)
+++.+. +++..+++.++++++|++.++|++++.+++.+.....++++
T Consensus 212 ~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~ 261 (511)
T 3e7w_A 212 LHCVTKDAVNKPKVLFEELKKSGLNVWTSTPSFVQMCLMDPGFSQDLLPH 261 (511)
T ss_dssp EEECCHHHHHSHHHHHHHHHHHCCSEEEECHHHHHHHHTSTTCSTTTCTT
T ss_pred EEEcChhhhcCHHHHHHHHHHcCCcEEEecHHHHHHHHhccccccccCCc
Confidence 999875 68999999999999999999999999999988777666654
|
| >3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-41 Score=325.41 Aligned_cols=276 Identities=20% Similarity=0.242 Sum_probs=230.1
Q ss_pred CCCHHHHHHHHhhhcCCccEEEEC--CeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHhhhccce
Q 046637 13 PLTPISFLERSAVVYRDRPSVVYG--DVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAGAV 90 (301)
Q Consensus 13 ~~~~~~~l~~~~~~~~~~~al~~~--~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~ 90 (301)
.+++.++|+++++++||++|+++. ++++||+||.++++++|+.|.++|+++||+|+++++|++++++++|||+++|++
T Consensus 60 ~~tl~~~l~~~a~~~pd~~Al~~~~~~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~ns~e~~v~~lA~~~~Ga~ 139 (979)
T 3tsy_A 60 HLSLHDYIFQNISEFATKPCLINGPTGHVYTYSDVHVISRQIAANFHKLGVNQNDVVMLLLPNCPEFVLSFLAASFRGAT 139 (979)
T ss_dssp TSCHHHHHTTTGGGTTTSEEEEETTTCCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECSSCHHHHHHHHHHHHHTCE
T ss_pred CCCHHHHHHHHHHhCCCCeEEEECCCCcEEEHHHHHHHHHHHHHHHHHcCCCCcCEEEEEeCCCHHHHHHHHHHHHcCCE
Confidence 579999999999999999999996 689999999999999999999999999999999999999999999999999999
Q ss_pred eeecCCCCCHHHHHHHHHhcCceEEEEcCCchhhHHHHHHHhccccCCCCceEEccCCCCCCcccccCCCCccHHHHHhh
Q 046637 91 LCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVASSSGNLEYESLLAI 170 (301)
Q Consensus 91 ~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (301)
++|++|.++.+++.+++++++++++|++......+....... ...++.++..... ....+...+.++...
T Consensus 140 ~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 209 (979)
T 3tsy_A 140 ATAANPFFTPAEIAKQAKASNTKLIITEARYVDKIKPLQNDD------GVVIVCIDDNESV----PIPEGCLRFTELTQS 209 (979)
T ss_dssp EEEECTTSCHHHHHHHHHHHTEEEEEECSTTTTTSHHHHHTS------CCEEEECCCCTTS----CCCTTEEEGGGTSSC
T ss_pred EEeeCCCCCHHHHHHHHHHcCCeEEEEChHHHHHHHHHhhcC------CceEEEeCCcccc----cCCcccccHHHHhhc
Confidence 999999999999999999999999999988877666654331 1234444432111 111223444444333
Q ss_pred ccc---cccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHH----HhhCCCCCEEEEeccchhhhhhHH-H
Q 046637 171 GKL---REVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAAL----FNEMGLMPTYLWCVPMFHCNGWCL-T 242 (301)
Q Consensus 171 ~~~---~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~----~~~~~~~~~~l~~~p~~h~~g~~~-~ 242 (301)
... ........++++++|+|||||||.||||+++|.++...+..... .+.+.+++++++.+|++|.+|+.. +
T Consensus 210 ~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~ 289 (979)
T 3tsy_A 210 TTEASEVIDSVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMFHIYALNSIM 289 (979)
T ss_dssp CSGGGGGSCCSCCCTTSEEECCBCCCSSSSCCBEEEEHHHHHHHHHHHHCSSSCSSCCCSSCEEEECSCSSSHHHHHHTH
T ss_pred cccccccCCcCCCCccceEEEEeCCCCCCCCeEEEechHHHHHHHHHHHHhhcccccCCCCCEEEEECchHHHHHHHHHH
Confidence 222 12223467899999999999999999999999999887766543 345778999999999999999864 6
Q ss_pred HHHHHhCCeEEeeCCCCHHHHHHHHHhcCcceecCChHHHHHHHcCCCCccccccC
Q 046637 243 WAVAAQGGTNVCQRTVNAKEIFDNITRHKVTHFGGAPTVLNMIANAPPVFENRFRG 298 (301)
Q Consensus 243 ~~~l~~g~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~ 298 (301)
+.++..|+++++.+.+++..+++.++++++|++.++|+++..|++.+.....++++
T Consensus 290 ~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~ 345 (979)
T 3tsy_A 290 LCGLRVGAAILIMPKFEINLLLELIQRCKVTVAPMVPPIVLAIAKSSETEKYDLSS 345 (979)
T ss_dssp HHHHHHTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHCGGGGTSCCTT
T ss_pred HHHHhcCcEEEEeCCCCHHHHHHHHHHhCCeEEEcHHHHHHHHHhCccccCCCccc
Confidence 88899999999999999999999999999999999999999999987776666654
|
| >1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-41 Score=307.03 Aligned_cols=259 Identities=15% Similarity=0.148 Sum_probs=211.9
Q ss_pred ccccCCCCC-CCCHHHHHHHHhhhcCCccEEEECCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHH
Q 046637 4 MIRCSANYV-PLTPISFLERSAVVYRDRPSVVYGDVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHF 82 (301)
Q Consensus 4 ~~~~~~~~~-~~~~~~~l~~~~~~~~~~~al~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~l 82 (301)
++....+++ ..++.++|++.++++||++|+++.++++||+||.++++++|..|.+.|+++||+|+++++|++++++++|
T Consensus 28 ~~~~~~~~~~~~~l~~~l~~~a~~~p~~~Al~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~l 107 (563)
T 1amu_A 28 VNNTKAEYPRDKTIHQLFEEQVSKRPNNVAIVCENEQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLFIGIL 107 (563)
T ss_dssp TTCCCCCCCTTCCHHHHHHHHHHHCTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHH
T ss_pred hCCCCCCCCCCCcHHHHHHHHHHHCCCCeEEEeCCceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHH
Confidence 455555555 5799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhccceeeecCCCCCHHHHHHHHHhcCceEEEEcCCchhhHHHHHHHhccccCCCCceEEccCCCCCCcccccCCCCc
Q 046637 83 GVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVASSSGNL 162 (301)
Q Consensus 83 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 162 (301)
||+++|++++|++|.++.+++.+++++++++++|++.+....... .. ....+..++....
T Consensus 108 A~~~~Gav~vpl~~~~~~~~l~~il~~~~~~~li~~~~~~~~~~~----~~----~~~~~~~~~~~~~------------ 167 (563)
T 1amu_A 108 AVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHN----IQ----FNGQVEIFEEDTI------------ 167 (563)
T ss_dssp HHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHTT----SC----CCSEEEECCCSTT------------
T ss_pred HHHHhCCEEEEeCCCCcHHHHHHHHHhcCCCEEEEcCchhhhhhh----cc----ccCceeeecchhh------------
Confidence 999999999999999999999999999999999998765432211 11 1112333222100
Q ss_pred cHHHHHhhccccccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhhCCCCCEEEEeccchhhhhhHHH
Q 046637 163 EYESLLAIGKLREVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPTYLWCVPMFHCNGWCLT 242 (301)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~h~~g~~~~ 242 (301)
.............++++++|+|||||||.||||++||.++.+........+++.++|++++..|++|.+++..+
T Consensus 168 ------~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~ 241 (563)
T 1amu_A 168 ------KIREGTNLHVPSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSLNVTEKDRIGQFASISFDASVWEM 241 (563)
T ss_dssp ------TTSCCSCCCCCCCTTSEEEEEEEC-----CEEEEEESHHHHHHHHHHHHTSCCCTTCEEEECSCTTSTHHHHHH
T ss_pred ------ccccCccCCCCCCCCCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHHHhcCCCCCCEEEEeCCccHHHHHHHH
Confidence 00001111123567899999999999999999999999999888877777888999999999999999998878
Q ss_pred HHHHHhCCeEEeeCC---CCHHHHHHHHHhcCcceecCChHHHHHHHcC
Q 046637 243 WAVAAQGGTNVCQRT---VNAKEIFDNITRHKVTHFGGAPTVLNMIANA 288 (301)
Q Consensus 243 ~~~l~~g~~~v~~~~---~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~ 288 (301)
+.++..|+++++.+. +++..+++.++++++|++.++|+++..|.+.
T Consensus 242 ~~~l~~G~~~v~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~ 290 (563)
T 1amu_A 242 FMALLTGASLYIILKDTINDFVKFEQYINQKEITVITLPPTYVVHLDPE 290 (563)
T ss_dssp HHHHTTTCEEEECCHHHHTCHHHHHHHHHHTTCCEEEECHHHHTTSCTT
T ss_pred HHHHHCCCEEEEcChHhhcCHHHHHHHHHHcCCcEEEeCHHHHHHHHhc
Confidence 889999999999875 6899999999999999999999999887643
|
| >3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-40 Score=301.21 Aligned_cols=256 Identities=15% Similarity=0.115 Sum_probs=214.6
Q ss_pred CCCCHHHHHHHHhhhcCCccEEEECCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHhhhcccee
Q 046637 12 VPLTPISFLERSAVVYRDRPSVVYGDVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAGAVL 91 (301)
Q Consensus 12 ~~~~~~~~l~~~~~~~~~~~al~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~ 91 (301)
+..++.+.|++.++++||++|+.+.++++||+||.++++++|.+|.+.|+++||+|+++++|++++++++|||+++|+++
T Consensus 2 ~~~~l~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~G~v~ 81 (521)
T 3l8c_A 2 SLKDMIDSIEQFAQTQADFPVYDCLGERRTYGQLKRDSDSIAAFIDSLALLAKSPVLVFGAQTYDMLATFVALTKSGHAY 81 (521)
T ss_dssp CCCCHHHHHHHHHHHSTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHTCCCTTCCEEEEECSSHHHHHHHHHHHHTTCCE
T ss_pred cHHHHHHHHHHHHHHCCCCcceecCCCeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEE
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCCCHHHHHHHHHhcCceEEEEcCCchhhHHHHHHHhccccCCCCceEEccCCCCCCcccccCCCCccHHHHH---
Q 046637 92 CTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVASSSGNLEYESLL--- 168 (301)
Q Consensus 92 v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~--- 168 (301)
+|++|.++.+++.++++.++++++|++++.... +..+.. ..+.++.
T Consensus 82 vpl~~~~~~~~l~~il~~~~~~~ii~~~~~~~~--------------~~~~~~-----------------~~~~~~~~~~ 130 (521)
T 3l8c_A 82 IPVDVHSAPERILAIIEIAKPSLIIAIEEFPLT--------------IEGISL-----------------VSLSEIESAK 130 (521)
T ss_dssp EEEETTSCHHHHHHHHHHSCCSEEEESSCCCSC--------------CTTSEE-----------------EEHHHHHHHH
T ss_pred EecCccccHHHHHHHHHhCCCCEEEecCccccc--------------cccCcc-----------------cchhhhhhcc
Confidence 999999999999999999999999998765321 111100 1111111
Q ss_pred hhccccccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHH--hhCCCCCEEEEeccchhhhhhHHHHHHH
Q 046637 169 AIGKLREVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALF--NEMGLMPTYLWCVPMFHCNGWCLTWAVA 246 (301)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~--~~~~~~~~~l~~~p~~h~~g~~~~~~~l 246 (301)
.............++++++|+|||||||.||||++||.++.+........ +....++++++..|++|..++..++.++
T Consensus 131 ~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l 210 (521)
T 3l8c_A 131 LAEMPYERTHSVKGDDNYYIIFTSGTTGQPKGVQISHDNLLSFTNWMIEDAAFDVPKQPQMLAQPPYSFDLSVMYWAPTL 210 (521)
T ss_dssp HHTCCCCCSSCCCTTSEEEEEECCC---CCCEEEEEHHHHHHHHHHHHHCTTTCCCSSCEEECCSCTTSGGGHHHHHHHH
T ss_pred cccCCcccCCCCCCCCcEEEEEcCCCCCCCCEEEEehHHHHHHHHHHhhccccCCCCCCeEEecCCccHHHHHHHHHHHH
Confidence 11111222334678999999999999999999999999998877665554 6677889999999999999988888899
Q ss_pred HhCCeEEeeCCC---CHHHHHHHHHhcCcceecCChHHHHHHHcCCCCccccccC
Q 046637 247 AQGGTNVCQRTV---NAKEIFDNITRHKVTHFGGAPTVLNMIANAPPVFENRFRG 298 (301)
Q Consensus 247 ~~g~~~v~~~~~---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~ 298 (301)
..|+++++.+.+ ++..+++.+.++++|++.++|++++.++........++++
T Consensus 211 ~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~ 265 (521)
T 3l8c_A 211 ALGGTLFALPKELVADFKQLFTTIAQLPVGIWTSTPSFADMAMLSDDFCQAKMPA 265 (521)
T ss_dssp HTTCEEEECCGGGTTCHHHHHHHHHHSCCSEEEECHHHHHHHHTSTTCSTTTCTT
T ss_pred hcCCEEEEcCHHHhhCHHHHHHHHHHcCCcEEEeCCCHHHHHhhhhccccccCcc
Confidence 999999998754 8999999999999999999999999999887766666654
|
| >4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-40 Score=305.69 Aligned_cols=248 Identities=20% Similarity=0.227 Sum_probs=208.3
Q ss_pred CCCCHHHHHHHHhhhcCCccEEEECCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHhhhcccee
Q 046637 12 VPLTPISFLERSAVVYRDRPSVVYGDVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAGAVL 91 (301)
Q Consensus 12 ~~~~~~~~l~~~~~~~~~~~al~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~ 91 (301)
...++.++|++.++++||++|+++.++++||+||.++++++|+.|.+.|+++||+|+++++|++++++++|||+++|+++
T Consensus 73 ~~~~l~~~l~~~a~~~pd~~A~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~ 152 (570)
T 4gr5_A 73 AGACVHELFEAQAARAPDAVALLHEADELTYGALNERANRLAHRLVGLGVAPGTLVGVHLERGFDMVVALLAVLKAGGGY 152 (570)
T ss_dssp CSCCHHHHHHHHHHHCTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCEE
T ss_pred ccCCHHHHHHHHHHHCCCCeEEECCCCcEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHHCCEE
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCCCHHHHHHHHHhcCceEEEEcCCchhhHHHHHHHhccccCCCCceEEccCCCCCCcccccCCCCccHHHHHhhc
Q 046637 92 CTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVASSSGNLEYESLLAIG 171 (301)
Q Consensus 92 v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (301)
+|++|.++.+++.+++++++++++|++......+ . ....+...+... ...
T Consensus 153 vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~-------~----~~~~~~~~~~~~-------------------~~~ 202 (570)
T 4gr5_A 153 TMLDPQFPVERLALSLEDTGAPLLVTSRPLSGRL-------T----GTTTLYVEDEAA-------------------SDA 202 (570)
T ss_dssp EECCTTSCHHHHHHHHHHHTCSEEEECTTTTTSS-------C----SSEEEECCC-------------------------
T ss_pred EEcCCCChHHHHHHHHHhcCCCEEEecchhhhcc-------c----CCcceeeecccc-------------------ccc
Confidence 9999999999999999999999999987654321 0 111222111110 000
Q ss_pred cccccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhhCCCCCEEEEeccchhhhhhHHHHHHHHhCCe
Q 046637 172 KLREVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPTYLWCVPMFHCNGWCLTWAVAAQGGT 251 (301)
Q Consensus 172 ~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~h~~g~~~~~~~l~~g~~ 251 (301)
..........++++++|+|||||||.||||++||.++.+.... ...+.+.+++++++..|++|..+...++.++..|++
T Consensus 203 ~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~-~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~ 281 (570)
T 4gr5_A 203 PAGNLATGVGPEDVACVMFTSGSTGRPKGVMSPHRALTGTYLG-QDYAGFGPDEVFLQCSPVSWDAFGLELFGALLFGAR 281 (570)
T ss_dssp -CCCCCCCCCTTSEEEEECCSSCCSSCCCEEEEHHHHHHHHSS-CCSSCCSTTCEEEECSCTTSSTHHHHHHHHHTTTCE
T ss_pred cccccCCCCCCCCeEEEEECCcCCCCCeEEEEecHHHHHHHHh-hhhcCCCCCCEEEEecCccHHHHHHHHHHHHhcCCE
Confidence 1111223467889999999999999999999999999766554 345577889999999999987777778889999999
Q ss_pred EEeeC--CCCHHHHHHHHHhcCcceecCChHHHHHHHcCCC
Q 046637 252 NVCQR--TVNAKEIFDNITRHKVTHFGGAPTVLNMIANAPP 290 (301)
Q Consensus 252 ~v~~~--~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~ 290 (301)
+++.+ .+++..+++.++++++|++.++|++++.|++...
T Consensus 282 ~v~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~ 322 (570)
T 4gr5_A 282 CVLQSGQNPDPLEIGELVARHGVTMLQLSASLFNFLVDEVP 322 (570)
T ss_dssp EEECSSSSCCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCG
T ss_pred EEEcCCccCCHHHHHHHHHHcCCcEEEecHHHHHHHHhhch
Confidence 99986 5789999999999999999999999999987543
|
| >4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-40 Score=307.26 Aligned_cols=247 Identities=15% Similarity=0.159 Sum_probs=209.5
Q ss_pred CCCCCCHHHHHHHHhhhcCCccEEEECCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHhhhccc
Q 046637 10 NYVPLTPISFLERSAVVYRDRPSVVYGDVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAGA 89 (301)
Q Consensus 10 ~~~~~~~~~~l~~~~~~~~~~~al~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~ 89 (301)
.+.+.++.++|++.++++||++|+++.++++||+||.++++++|+.|.+.|+++||+|+++++|++++++++|||+++|+
T Consensus 23 ~~~~~tl~~~~~~~a~~~Pd~~Av~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vva~lailkaGa 102 (620)
T 4dg8_A 23 LYAHPTVVARFSEMAALHPHREAIRDRFGSVDYRQLLDSAEQLSDYLLEHYPQPGVCLGVYGEYSRESITCLLAILLSGH 102 (620)
T ss_dssp GGGSCCHHHHHHHHHHHCTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHHCCSSCCEEEEESSSCHHHHHHHHHHHHTTC
T ss_pred CCCCCCHHHHHHHHHHhCCCCeEEEcCCCcCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCC
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeecCCCCCHHHHHHHHHhcCceEEEEcCCchhhHHHHHHHhccccCCCCceEEccCCCCCCcccccCCCCccHHHHHh
Q 046637 90 VLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVASSSGNLEYESLLA 169 (301)
Q Consensus 90 ~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (301)
+++|++|.++.+++.+++++++++++++++....... ....+. +....
T Consensus 103 ~~vpld~~~p~~~l~~il~~~~~~~vl~~~~~~~~~~-----------~~~~~~-~~~~~-------------------- 150 (620)
T 4dg8_A 103 HYLYIDLKQPAAWNAELCRQVDCRLILDCSTTPTPAN-----------GLPCVP-VRHLP-------------------- 150 (620)
T ss_dssp EEEECCTTSCHHHHHHHHHHHTEEEEEECCSSCCCCT-----------TSCEEE-GGGCC--------------------
T ss_pred EEEeeCccChHHHHHHHHHhCCCcEEEecCccccccc-----------CCceee-eccCC--------------------
Confidence 9999999999999999999999999997654322100 111111 11100
Q ss_pred hccccccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhhCCCCCEEEEeccchhhhhhHHHHHHHHhC
Q 046637 170 IGKLREVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPTYLWCVPMFHCNGWCLTWAVAAQG 249 (301)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~h~~g~~~~~~~l~~g 249 (301)
............++++++|+|||||||.||||+++|.++.+.+.. ...+.+.+++++++..|++|..++..++.++..|
T Consensus 151 ~~~~~~~~~~~~~~d~a~iiyTSGSTG~PKgV~~th~~l~~~~~~-~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G 229 (620)
T 4dg8_A 151 AAPASVARPCFAADQIAYINFSSGTTGRPKAIACTHAGITRLCLG-QSFLAFAPQMRFLVNSPLSFDAATLEIWGALLNG 229 (620)
T ss_dssp CCCCCSSCCCCCTTSEEEEEEEBSSSSSCEEEEEEHHHHHHHHSS-CGGGTTCTTCEEEECSCTTSTHHHHHHHHHHTTT
T ss_pred cCCccccCCCCCCCCeEEEEECCCccccCeEEEEchHHHHHHHHH-HHhhCCCCCCEEEEECccCHHHHHHHHHHHHhcC
Confidence 000011122356789999999999999999999999999776655 4567788999999999999999988889999999
Q ss_pred CeEEeeC--CCCHHHHHHHHHhcCcceecCChHHHHHHHcCC
Q 046637 250 GTNVCQR--TVNAKEIFDNITRHKVTHFGGAPTVLNMIANAP 289 (301)
Q Consensus 250 ~~~v~~~--~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~ 289 (301)
+++++.+ .+++..+++.++++++|++.++|++++.|++..
T Consensus 230 ~~~v~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~ 271 (620)
T 4dg8_A 230 GCCVLNDLGPLDPGVLRQLIGERGADSAWLTASLFNTLVDLD 271 (620)
T ss_dssp CEEEECCSSSCCHHHHHHHHHTTCCCEEEEEHHHHHHHHHHC
T ss_pred CEEEeCccccCCHHHHHHHHHHhCCcEEEccHHHHHHHHhcC
Confidence 9999964 679999999999999999999999999998643
|
| >3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-41 Score=310.29 Aligned_cols=257 Identities=17% Similarity=0.124 Sum_probs=213.1
Q ss_pred CCCCCHHHHHHHHhhhcCCccEEEEC----CeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHhhh
Q 046637 11 YVPLTPISFLERSAVVYRDRPSVVYG----DVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPM 86 (301)
Q Consensus 11 ~~~~~~~~~l~~~~~~~~~~~al~~~----~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~ 86 (301)
.+.+++.++|++.++++||++|+++. ++++||+||.++++++|..|.+.|+++||+|+++++|++++++++|||++
T Consensus 8 ~~~~tl~~~l~~~a~~~p~~~a~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~ 87 (590)
T 3kxw_A 8 LQCQSLVDVVRLRALHSPNKKSCTFLNKELEETMTYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLPLIQAFLGCLY 87 (590)
T ss_dssp HTCSSHHHHHHHHHHHCTTSEEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHH
T ss_pred cCcccHHHHHHHHHHhCCCCeEEEEEcCCeeEEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHH
Confidence 46789999999999999999999874 47999999999999999999999999999999999999999999999999
Q ss_pred ccceeeecCCCC---CHHHHHHHHHhcCceEEEEcCCchhhHHHHH-HHhccccCCCCceEEccCCCCCCcccccCCCCc
Q 046637 87 AGAVLCTLNTRH---DSAMVSVLLRHSEAKIIFVDYQLLPIAQGAF-EILSKTSAKLPLLVLVPECGEPVSTVASSSGNL 162 (301)
Q Consensus 87 ~G~~~v~l~~~~---~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 162 (301)
+|++++|++|.. +.+++.++++.+++++++++.+....+.... ...+ ....+..+...
T Consensus 88 ~G~~~vpl~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~-------------- 149 (590)
T 3kxw_A 88 AGCIAVPIYPPAQEKLLDKAQRIVTNSKPVIVLMIADHIKKFTADELNTNP----KFLKIPAIALE-------------- 149 (590)
T ss_dssp TTCEEEEECCCCSHHHHHHHHHHHHHHCCSEEEECHHHHHHHCC-----CC----EETTEEEEEGG--------------
T ss_pred hCcEEEEecCCCchHHHHHHHHHHHhCCCCEEEeCHHHHHHHHHhhhhhcc----cccccceeech--------------
Confidence 999999999988 4578999999999999999876554432221 1111 11122221110
Q ss_pred cHHHHHhhccccccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhhCCCCCEEEEeccchhhhhhHH-
Q 046637 163 EYESLLAIGKLREVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPTYLWCVPMFHCNGWCL- 241 (301)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~h~~g~~~- 241 (301)
++..............++++++|+|||||||.||||++||.+++.++......+++.++|++++.+|++|.+|+..
T Consensus 150 ---~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~ 226 (590)
T 3kxw_A 150 ---SIELNRSSSWQPTSIKSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFTSFHMNDETIIFSWLPPHHDMGLIGC 226 (590)
T ss_dssp ---GCCGGGGGGCCCCCCCTTSEEEEEECSSCSSSCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHTT
T ss_pred ---hccccccccCCCCCCCCCCeEEEEeCcCCCCCceEEEeeHHHHHHHHHHHHHhhCCCCcCeEEEecCCCcchhhHHH
Confidence 0000011111223467889999999999999999999999999999999888899999999999999999999876
Q ss_pred HHHHHHhCCeEEeeCCC----CHHHHHHHHHhcCcceecCChHHHHHHHcC
Q 046637 242 TWAVAAQGGTNVCQRTV----NAKEIFDNITRHKVTHFGGAPTVLNMIANA 288 (301)
Q Consensus 242 ~~~~l~~g~~~v~~~~~----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~ 288 (301)
++.++..|+++++.+.+ ++..+++.++++++|++.++|.+++.+++.
T Consensus 227 ~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~ 277 (590)
T 3kxw_A 227 ILTPIYGGIQAIMMSPFSFLQNPLSWLKHITKYKATISGSPNFAYDYCVKR 277 (590)
T ss_dssp THHHHHHTCEEEECCHHHHHHCTHHHHHHHHHHTCSEEEECTHHHHHHHHH
T ss_pred HHHHHhcCceEEEeCHHHHHHCHHHHHHHHHHhCCeeecCChhHHHHHHHH
Confidence 78899999999998865 899999999999999999999999999875
|
| >2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-38 Score=316.67 Aligned_cols=260 Identities=17% Similarity=0.210 Sum_probs=218.4
Q ss_pred CcccccCCCCCCCCHHHHHHHHhhhcCCccEEEECCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHH
Q 046637 2 EGMIRCSANYVPLTPISFLERSAVVYRDRPSVVYGDVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELH 81 (301)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~al~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~ 81 (301)
..+|....+++..++.++|++.++++||++|+++.++++||+||.++++++|+.|.+.|+++|++|+|+++|++++++++
T Consensus 452 ~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~Av~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vv~~ 531 (1304)
T 2vsq_A 452 TGLNPPAQAHETKPLTYWFKEAVNANPDAPALTYSGQTLSYRELDEEANRIARRLQKHGAGKGSVVALYTKRSLELVIGI 531 (1304)
T ss_dssp TTTSCCCCCCCCCCHHHHHHHHHHHCTTSEEEESSSCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHH
T ss_pred HhcCCCCCCCCCCCHHHHHHHHHHhCCCCeEEEECCeeEcHHHHHHHHHHHHHHHHhcCcCCcCEEEEEeCCCHHHHHHH
Confidence 35777777888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhccceeeecCCCCCHHHHHHHHHhcCceEEEEcCCchhhHHHHHHHhccccCCCCceEEccCCCCCCcccccCCCC
Q 046637 82 FGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVASSSGN 161 (301)
Q Consensus 82 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 161 (301)
|||+++|++++|++|.++.+++.++++++++++++++......... .+ .....+.+++..
T Consensus 532 lailkaG~~~vpldp~~p~~rl~~il~~~~~~~vl~~~~~~~~~~~----~~----~~~~~~~~~~~~------------ 591 (1304)
T 2vsq_A 532 LGVLKAGAAYLPVDPKLPEDRISYMLADSAAACLLTHQEMKEQAAE----LP----YTGTTLFIDDQT------------ 591 (1304)
T ss_dssp HHHHHTTCEEEECCTTSCHHHHHHHHHHHTCCEEEECSTTCTTSTT----CC----CCSEEEESSCGG------------
T ss_pred HHHHHHCCEEEEECCCCHHHHHHHHHHHcCCCEEEECcchhhhhhc----cC----CCCcEEEecccc------------
Confidence 9999999999999999999999999999999999998765432111 11 112233332210
Q ss_pred ccHHHHHhhccccccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhhCCCCCEEEEeccchhhhhhHH
Q 046637 162 LEYESLLAIGKLREVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPTYLWCVPMFHCNGWCL 241 (301)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~h~~g~~~ 241 (301)
.+ . ...........++++++|+|||||||+||||+++|.++.+. ......+.+.++++++...|++|..+...
T Consensus 592 -~~----~-~~~~~~~~~~~~~~~ayiiyTSGSTG~PKgV~~~h~~l~~~-~~~~~~~~~~~~d~~l~~~~~~fd~~~~~ 664 (1304)
T 2vsq_A 592 -RF----E-EQASDPATAIDPNDPAYIMYTSGTTGKPKGNITTHANIQGL-VKHVDYMAFSDQDTFLSVSNYAFDAFTFD 664 (1304)
T ss_dssp -GG----G-SCSSCCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHH-HSSCCSSCCCTTCEEEECSCTTSTHHHHH
T ss_pred -cc----c-cccCCCCCCCCCCCeEEEEeCCCCCCCCCEEEEehHHHHHH-HHHHHhcCCCCCCEEEEECCccHHHHHHH
Confidence 00 0 01111223456789999999999999999999999999865 44445567889999999999999888877
Q ss_pred HHHHHHhCCeEEeeCC---CCHHHHHHHHHhcCcceecCChHHHHHHHcC
Q 046637 242 TWAVAAQGGTNVCQRT---VNAKEIFDNITRHKVTHFGGAPTVLNMIANA 288 (301)
Q Consensus 242 ~~~~l~~g~~~v~~~~---~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~ 288 (301)
++.++..|+++++.+. .++..+++.++++++|+++++|++++.|.+.
T Consensus 665 ~~~~l~~G~~l~~~~~~~~~~~~~l~~~i~~~~vt~~~~~p~~~~~l~~~ 714 (1304)
T 2vsq_A 665 FYASMLNAARLIIADEHTLLDTERLTDLILQENVNVMFATTALFNLLTDA 714 (1304)
T ss_dssp HHHHHTTTCEEEECCGGGTTCHHHHHHHHHHHTCCEEEEEHHHHHHHHHH
T ss_pred HHHHHHcCCEEEECChhhcCCHHHHHHHHHHcCCcEEEccHHHHHHHHhh
Confidence 8999999999999873 6899999999999999999999999999864
|
| >3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-38 Score=288.85 Aligned_cols=256 Identities=19% Similarity=0.177 Sum_probs=204.7
Q ss_pred CCCCCCCHHHHHHHHhhhcCCccEEEECC----------eeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHH
Q 046637 9 ANYVPLTPISFLERSAVVYRDRPSVVYGD----------VQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMY 78 (301)
Q Consensus 9 ~~~~~~~~~~~l~~~~~~~~~~~al~~~~----------~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~ 78 (301)
..+..+++.++|+++++++||++|+++.+ +++||+||.++++++|+.|.+.|+ +||+|+++++|+++++
T Consensus 15 ~~~~~~tl~~~l~~~a~~~p~~~A~~~~~~~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~~~~ 93 (562)
T 3ite_A 15 QYTSTVPPSHYIETWAKTHPEWKAVEVATGFLGSQKIVTEDWTYKKLNETANQVANLIIHASL-HGRAIAVSLDRSLIAF 93 (562)
T ss_dssp ---CCCCTTHHHHHHHHHCTTSEEEEEEECC-----CEEEEEEHHHHHHHHHHHHHHHHHTTC-SSCEEEEECCSCHHHH
T ss_pred eecccCCHHHHHHHHHHHCCCchhhhcccccccccccccCCCCHHHHHHHHHHHHHHHHhcCC-CCCEEEEEeCCCHHHH
Confidence 44568999999999999999999999743 789999999999999999999999 7999999999999999
Q ss_pred HHHHHhhhccceeeecCCCCCHHHHHHHHHhcCceEEEEcCCchhhHHHHHHHhccccCCCCceEEccCCCCCCcccccC
Q 046637 79 ELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVASS 158 (301)
Q Consensus 79 ~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 158 (301)
+++|||+++|++++|++|.++.+++.+++++++++++|+++....... .. ....++..+
T Consensus 94 ~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~-----~~----~~~~~~~~~------------ 152 (562)
T 3ite_A 94 AIIVGIMKSGNTYVPIEAGLPNDRKSFLLRDSRAAMAFVCDNNFDGVE-----LP----PETKVLDTK------------ 152 (562)
T ss_dssp HHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTTCC-----CC----TTCEEEETT------------
T ss_pred HHHHHHHHhCCEEEecCCcCHHHHHHHHHHhcCCCEEEEccccccccc-----cC----ccceeeccc------------
Confidence 999999999999999999999999999999999999999866543210 00 111122111
Q ss_pred CCCccHHHHHhhccccccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHH--------hhCCCCCEEEEe
Q 046637 159 SGNLEYESLLAIGKLREVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALF--------NEMGLMPTYLWC 230 (301)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~--------~~~~~~~~~l~~ 230 (301)
...+.+...............++++++|+|||||||.||||++||.++.......... ..+...+++++.
T Consensus 153 --~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (562)
T 3ite_A 153 --NQSFIENLSTQDTSDILNNYPENLDAYLLYTSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVGKFLCL 230 (562)
T ss_dssp --CHHHHHHHHHSCCSCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHHHHHCGGGGGCTTTCEEECC
T ss_pred --chhhhhhcccccccccccCCCCCCcEEEEECCCCCCCCcEEEECchhHHHHHHHHHhhhccccchhcccCcCceEEEe
Confidence 1234444333333333334567888999999999999999999999998877665443 346788999999
Q ss_pred ccchhhhhhHHHHHHHHhCCeEEeeCCCC-HHHHHHHHHhcCcceecCChHHHHHHHcC
Q 046637 231 VPMFHCNGWCLTWAVAAQGGTNVCQRTVN-AKEIFDNITRHKVTHFGGAPTVLNMIANA 288 (301)
Q Consensus 231 ~p~~h~~g~~~~~~~l~~g~~~v~~~~~~-~~~~~~~i~~~~~t~~~~~P~~~~~l~~~ 288 (301)
.|++|..++..++.++..|+++++.+.+. +..+++.++++++|++.++|++++.+...
T Consensus 231 ~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~~~~~ 289 (562)
T 3ite_A 231 ASRAFDVHIGEMFLAWRFGLCAVTGERLSMLDDLPRTFRELGVTHAGIVPSLLDQTGLV 289 (562)
T ss_dssp SCTTSTHHHHHHHHHHHTTCEEEECCHHHHHHSHHHHHHHTTCCEEEECHHHHHHHTCC
T ss_pred cCchhhhhHHHHHHHHhcccEEEecchhhCHHHHHHHHHHcCCCEEEcCHHHHhhcccC
Confidence 99999998888888999999999887554 57789999999999999999999887544
|
| >3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.2e-38 Score=282.89 Aligned_cols=243 Identities=19% Similarity=0.188 Sum_probs=198.7
Q ss_pred CCCCCCCCHHHHHHHHhhhcCC-ccEEEECCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHhhh
Q 046637 8 SANYVPLTPISFLERSAVVYRD-RPSVVYGDVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPM 86 (301)
Q Consensus 8 ~~~~~~~~~~~~l~~~~~~~~~-~~al~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~ 86 (301)
+..+..+++.+.|.++++++|+ ++|+++.++++||+||.++++++|..|. .|++|+++++|+++++++++||++
T Consensus 16 ~~~~~~~tl~~~l~~~a~~~p~d~~Al~~~~~~~Ty~eL~~~~~~~A~~L~-----~~~~V~i~~~~~~~~~~~~la~~~ 90 (505)
T 3nyq_A 16 PRGSHMSSLFPALSPAPTGAPADRPALRFGERSLTYAELAAAAGATAGRIG-----GAGRVAVWATPAMETGVAVVAALL 90 (505)
T ss_dssp --------CCTTTSSCCCSGGGGSEEEEETTEEEEHHHHHHHHHHHHTTCC--------CEEEECCSSHHHHHHHHHHHH
T ss_pred cCCcccchhHHHHHHHHHhCCCCCeEEEECCeeeeHHHHHHHHHHHHhhcc-----CCCEEEEEcCCCHHHHHHHHHHHH
Confidence 3344567788899999999987 9999999999999999999999998774 388999999999999999999999
Q ss_pred ccceeeecCCCCCHHHHHHHHHhcCceEEEEcCCchhhHHHHHHHhccccCCCCceEEccCCCCCCcccccCCCCccHHH
Q 046637 87 AGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVASSSGNLEYES 166 (301)
Q Consensus 87 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 166 (301)
+|++++|++|.++.+++.+++++++++++|++...... .... .++.+ .++...
T Consensus 91 ~Ga~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~-----~~~~----~~~~~-~~~~~~----------------- 143 (505)
T 3nyq_A 91 AGVAAVPLNPKSGDKELAHILSDSAPSLVLAPPDAELP-----PALG----ALERV-DVDVRA----------------- 143 (505)
T ss_dssp HTCCEEEECTTCCHHHHHHHHHHHCCSEEEECTTCCCC-----GGGT----TSEEE-ECCTTC-----------------
T ss_pred hCCEEEEcCCCCCHHHHHHHHHHCCCCEEEECCccccc-----hhhc----ccccc-cccccc-----------------
Confidence 99999999999999999999999999999998652110 0000 12221 111110
Q ss_pred HHhhccccccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhhCCCCCEEEEeccchhhhhhHH-HHHH
Q 046637 167 LLAIGKLREVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPTYLWCVPMFHCNGWCL-TWAV 245 (301)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~h~~g~~~-~~~~ 245 (301)
..........++++++|+|||||||.||||+++|.++..........+++.++|++++.+|++|.+|+.. ++.+
T Consensus 144 -----~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~ 218 (505)
T 3nyq_A 144 -----RGAVPEDGADDGDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAWQWTGEDVLVQGLPLFHVHGLVLGILGP 218 (505)
T ss_dssp -----CCCCCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECCCTTSHHHHTTTTHHH
T ss_pred -----ccCCCCCCCCCCCeEEEEeCCCCcCCCCeEEEeHHHHHHHHHHHHHHhCCCCCcEEEEeccHHHHHHHHHHHHHH
Confidence 0001123356789999999999999999999999999999998888899999999999999999999874 7899
Q ss_pred HHhCCeEEeeCCCCHHHHHHHHHhcCcceecCChHHHHHHHcC
Q 046637 246 AAQGGTNVCQRTVNAKEIFDNITRHKVTHFGGAPTVLNMIANA 288 (301)
Q Consensus 246 l~~g~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~ 288 (301)
+..|+++++.+.+++..+++.+ ++++|+++++|+++..|++.
T Consensus 219 l~~G~~~~~~~~~~~~~~~~~i-~~~~t~~~~~P~~~~~l~~~ 260 (505)
T 3nyq_A 219 LRRGGSVRHLGRFSTEGAAREL-NDGATMLFGVPTMYHRIAET 260 (505)
T ss_dssp HHHTCEEEECSSCCHHHHHHHH-TTTCCEEEECHHHHHHHHHH
T ss_pred HhcCCEEEECCCCChHHHHHHH-hhCCeEEEehHHHHHHHHHh
Confidence 9999999999999999999999 88999999999999999873
|
| >4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans} | Back alignment and structure |
|---|
Probab=99.83 E-value=8.8e-21 Score=163.89 Aligned_cols=114 Identities=11% Similarity=0.042 Sum_probs=100.0
Q ss_pred CCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhhCCCCCEEEEeccchhhhhhHHHHHHHHhCCeEEeeCCCCHH
Q 046637 182 ECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPTYLWCVPMFHCNGWCLTWAVAAQGGTNVCQRTVNAK 261 (301)
Q Consensus 182 ~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~h~~g~~~~~~~l~~g~~~v~~~~~~~~ 261 (301)
.+++++|+|||||||.||||++||.++.+++......+++.++|++++.+|++|.+|+..++.++..|+++++.+.. .
T Consensus 36 ~d~~a~Il~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~gl~~~~~~l~~g~~~~~~~~~--~ 113 (358)
T 4gs5_A 36 GGAREFVLHTSGSTGMPKPITVTRAQLAASAAMTGKALSLGPGTRALVCLNVGYIAGLMMLVRGMELDWELTVTEPT--A 113 (358)
T ss_dssp HTCSEEEEEEECTTSSEEEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEECCC--S
T ss_pred CCCCEEEEECCcccccCcEEEEeHHHHHHHHHHHHHHhCCCCCCEEEEECChHHHHHHHHHHHHHHhCcEEEecCcc--c
Confidence 47899999999999999999999999999999988899999999999999999999999889999999999988632 2
Q ss_pred HHHHHHHhcCcceecCChHHHHHHHcCCCCccccccC
Q 046637 262 EIFDNITRHKVTHFGGAPTVLNMIANAPPVFENRFRG 298 (301)
Q Consensus 262 ~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~ 298 (301)
+.++.++++++|++.++|++++.|++.+... .++++
T Consensus 114 ~~~~~i~~~~~t~~~~~P~~l~~ll~~~~~~-~~l~~ 149 (358)
T 4gs5_A 114 NPLAGLDHADFDFVAMVPMQLQSILENSATS-GQVDR 149 (358)
T ss_dssp CTTTTCSSCCCSEEEECHHHHHHHHHCTTTG-GGGGG
T ss_pred cHHHHHHHhCCeEEEcChHHHHHhhcccccc-ccCCc
Confidence 3467889999999999999999999876543 34443
|
| >3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=6.8e-18 Score=146.56 Aligned_cols=110 Identities=15% Similarity=0.091 Sum_probs=93.4
Q ss_pred CCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHH---HHHhhCCCCCEEEEeccc-hhhhhhHHHHHHHHhCCeEEee
Q 046637 180 KDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAA---ALFNEMGLMPTYLWCVPM-FHCNGWCLTWAVAAQGGTNVCQ 255 (301)
Q Consensus 180 ~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~---~~~~~~~~~~~~l~~~p~-~h~~g~~~~~~~l~~g~~~v~~ 255 (301)
..++++++|+|||||||.||+|+++|.++....... ....++.++|++++..|+ +|.+|+...+.++..|+ +++.
T Consensus 88 ~~~~~~a~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~-~v~~ 166 (369)
T 3hgu_A 88 LPADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGAINKERALRLGG-MFFS 166 (369)
T ss_dssp SCTTCCCEEEEECC---CCEEEEECHHHHHHHHHHHTTTTTTSTTCCCCEEEECSCCTTCHHHHHHHHHHHHTTS-CEEC
T ss_pred CCccccEEEEECCCCCCCCCEEEECHHHHHHHHHHHHhhHHhhCCCCcceEEEecCCCchhhhHHHHHHHHHcCC-EEEC
Confidence 467889999999999999999999999998877743 345567889999999999 99999888777788899 6777
Q ss_pred CCCCHH-----------------------HHHHHHHhcCcceecCChHHHHHHHcCCC
Q 046637 256 RTVNAK-----------------------EIFDNITRHKVTHFGGAPTVLNMIANAPP 290 (301)
Q Consensus 256 ~~~~~~-----------------------~~~~~i~~~~~t~~~~~P~~~~~l~~~~~ 290 (301)
.+++|. .+++.++++++|++.++|+++..|++.+.
T Consensus 167 ~~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~ 224 (369)
T 3hgu_A 167 IDIDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELLKRPE 224 (369)
T ss_dssp CCCCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHHTTCHH
T ss_pred ccCChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHHhhhh
Confidence 778888 88889999999999999999999998743
|
| >2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=2.5e-17 Score=146.13 Aligned_cols=111 Identities=13% Similarity=-0.020 Sum_probs=97.5
Q ss_pred CCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHH---HHhhCCCCCEEEEeccc-hhhhhhHHHHHHHHhCCeEEe
Q 046637 179 PKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAA---LFNEMGLMPTYLWCVPM-FHCNGWCLTWAVAAQGGTNVC 254 (301)
Q Consensus 179 ~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~---~~~~~~~~~~~l~~~p~-~h~~g~~~~~~~l~~g~~~v~ 254 (301)
...++++++|+|||||||.||+|++||.++........ ..+++.++|++++..|+ +|..++...+.++..|+++++
T Consensus 86 ~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~ 165 (437)
T 2y27_A 86 AVPQDRISRIHASSGTTGKPTVVGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTVIP 165 (437)
T ss_dssp SSCGGGCCEEEECCCTTSSCCEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEEEC
T ss_pred cCChhHeEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccccchHHHHHHHHcCCEEEe
Confidence 35668899999999999999999999999877654433 35678899999999998 788888778889999999999
Q ss_pred eCCCCHHHHHHHHHhcCcceecCChHHHHHHHcCC
Q 046637 255 QRTVNAKEIFDNITRHKVTHFGGAPTVLNMIANAP 289 (301)
Q Consensus 255 ~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~ 289 (301)
.+.+++..+++.++++++|+++++|+++..|++..
T Consensus 166 ~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~ 200 (437)
T 2y27_A 166 FGGGQTEKQVQLIQDFRPDIIMVTPSYMLSIADEI 200 (437)
T ss_dssp CCSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhCCCEEEECHHHHHHHHHHH
Confidence 88889999999999999999999999999998753
|
| >3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=2.9e-17 Score=145.68 Aligned_cols=110 Identities=17% Similarity=0.124 Sum_probs=95.4
Q ss_pred CCC-CCceEEEeccCCCCCCCeeeechHHHHHHHHHHH---HHhhCCCCCEEEEeccchhhhhhH-HHHHHHHhCCeEEe
Q 046637 180 KDE-CDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAA---LFNEMGLMPTYLWCVPMFHCNGWC-LTWAVAAQGGTNVC 254 (301)
Q Consensus 180 ~~~-~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~---~~~~~~~~~~~l~~~p~~h~~g~~-~~~~~l~~g~~~v~ 254 (301)
..+ +++++|+|||||||.||+|++||.++........ ..+++.++|++++..|+.|..+.. ..+.++..|+++++
T Consensus 82 ~~~~~~~a~i~~TSGTTG~PK~v~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~ 161 (436)
T 3qov_A 82 GDMKRDGVRIHSSSGTTGNPTVIVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTVP 161 (436)
T ss_dssp SCHHHHEEEEEECSCSSSCCCEEEEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEEC
T ss_pred CCCcCCeEEEEECCCcCCCCeEEEECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEEe
Confidence 445 8899999999999999999999999977665543 344788999999999997666544 57888999999999
Q ss_pred eCCCCHHHHHHHHHhcCcceecCChHHHHHHHcCC
Q 046637 255 QRTVNAKEIFDNITRHKVTHFGGAPTVLNMIANAP 289 (301)
Q Consensus 255 ~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~ 289 (301)
.+.+++..+++.|+++++|+++++|+++..|++..
T Consensus 162 ~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~ 196 (436)
T 3qov_A 162 AAAGNSKRQIKFISDFKTTALHAIPSYAIRLAEVF 196 (436)
T ss_dssp CCSCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHCCCEEEECHHHHHHHHHHH
Confidence 98889999999999999999999999999998763
|
| >2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia} | Back alignment and structure |
|---|
Probab=99.71 E-value=5.8e-17 Score=144.05 Aligned_cols=111 Identities=13% Similarity=0.011 Sum_probs=97.0
Q ss_pred CCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHH---HHhhCCCCCEEEEeccc-hhhhhhHHHHHHHHhCCeEEe
Q 046637 179 PKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAA---LFNEMGLMPTYLWCVPM-FHCNGWCLTWAVAAQGGTNVC 254 (301)
Q Consensus 179 ~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~---~~~~~~~~~~~l~~~p~-~h~~g~~~~~~~l~~g~~~v~ 254 (301)
...++++++|+|||||||.||+|++||.++........ ..+++.++|++++..|+ +|..++...+.++..|+++++
T Consensus 88 ~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~ 167 (443)
T 2y4o_A 88 AVPREQVVRVHASSGTTGKPTVVGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMVVP 167 (443)
T ss_dssp SSCGGGCCEEEEECCSSSSCEEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEEEC
T ss_pred CCChhheEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEEEE
Confidence 35668899999999999999999999999877654433 35678899999999998 677777778888999999999
Q ss_pred eCCCCHHHHHHHHHhcCcceecCChHHHHHHHcCC
Q 046637 255 QRTVNAKEIFDNITRHKVTHFGGAPTVLNMIANAP 289 (301)
Q Consensus 255 ~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~ 289 (301)
.+.+++..+++.|+++++|+++++|+++..|++..
T Consensus 168 ~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~ 202 (443)
T 2y4o_A 168 MSGGQTEKQVQLIRDFEPKIILVTPSYMLNLIDEM 202 (443)
T ss_dssp CCSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhCCcEEEECHHHHHHHHHHH
Confidence 98889999999999999999999999999998753
|
| >3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A* | Back alignment and structure |
|---|
Probab=95.46 E-value=0.22 Score=43.37 Aligned_cols=109 Identities=13% Similarity=0.092 Sum_probs=80.5
Q ss_pred eeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCC--CHHHHHHHHHhhhccceeeecCCCCCHHHHHHHHHhcCceEE
Q 046637 38 VQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPN--VPAMYELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKII 115 (301)
Q Consensus 38 ~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n--~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~v 115 (301)
-.+|.+.+...+..++..+...|+.++|++....+- ....+..+++++..|+..++.++ ...+.+...+++.++.++
T Consensus 104 v~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~-~~~~~~~~~i~~~~~t~~ 182 (436)
T 3qov_A 104 IVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTVPAAA-GNSKRQIKFISDFKTTAL 182 (436)
T ss_dssp EEEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEECCCS-CCHHHHHHHHHHHTCCEE
T ss_pred EEECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEEeCCC-CCHHHHHHHHHHHCCCEE
Confidence 368999999999889888888999999999998874 34455567888899998887754 477899999999999999
Q ss_pred EEcCCchhhHHHHHHHhccc--cCCCCceEEccC
Q 046637 116 FVDYQLLPIAQGAFEILSKT--SAKLPLLVLVPE 147 (301)
Q Consensus 116 i~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~ 147 (301)
+........+.+........ ..+++.++.-+.
T Consensus 183 ~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gGe 216 (436)
T 3qov_A 183 HAIPSYAIRLAEVFQEEGIDPRETTLKTLVIGAE 216 (436)
T ss_dssp ECCHHHHHHHHHHHHHTTCCTTSSSCCEEEEESS
T ss_pred EECHHHHHHHHHHHHHcCCCcccCCccEEEEeCC
Confidence 98877666555443332211 124555555443
|
| >2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A* | Back alignment and structure |
|---|
Probab=95.45 E-value=0.24 Score=43.11 Aligned_cols=90 Identities=18% Similarity=0.192 Sum_probs=72.0
Q ss_pred eeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCC--CHHHHHHHHHhhhccceeeecCCCCCHHHHHHHHHhcCceEE
Q 046637 38 VQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPN--VPAMYELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKII 115 (301)
Q Consensus 38 ~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n--~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~v 115 (301)
-.+|.+.+...+..++..+...|+.++|++....+. ....+...++++..|+.+++.++ .+.+.+...+++.++.++
T Consensus 108 v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~~~i~~~~~t~l 186 (437)
T 2y27_A 108 VGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTVIPFGG-GQTEKQVQLIQDFRPDII 186 (437)
T ss_dssp EEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEEECCCS-CCHHHHHHHHHHHCCSEE
T ss_pred EecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccccchHHHHHHHHcCCEEEeCCC-CCHHHHHHHHHHhCCCEE
Confidence 368999999888888888888899999999988885 34445567888899998887755 488999999999999999
Q ss_pred EEcCCchhhHHHH
Q 046637 116 FVDYQLLPIAQGA 128 (301)
Q Consensus 116 i~~~~~~~~~~~~ 128 (301)
+........+.+.
T Consensus 187 ~~~Ps~~~~l~~~ 199 (437)
T 2y27_A 187 MVTPSYMLSIADE 199 (437)
T ss_dssp EECHHHHHHHHHH
T ss_pred EECHHHHHHHHHH
Confidence 9877666555443
|
| >2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia} | Back alignment and structure |
|---|
Probab=95.40 E-value=0.25 Score=43.16 Aligned_cols=90 Identities=20% Similarity=0.247 Sum_probs=72.1
Q ss_pred eeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCC--HHHHHHHHHhhhccceeeecCCCCCHHHHHHHHHhcCceEE
Q 046637 38 VQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNV--PAMYELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKII 115 (301)
Q Consensus 38 ~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~--~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~v 115 (301)
-.+|.+.+...+..++..+...|+.++|++....+-+ ...+...++++..|+.+++.++ ...+.+...+++.++.++
T Consensus 110 v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~~~i~~~~~t~l 188 (443)
T 2y4o_A 110 VGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMVVPMSG-GQTEKQVQLIRDFEPKII 188 (443)
T ss_dssp EEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEEECCCS-CCHHHHHHHHHHHCCSEE
T ss_pred EecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEEEECCC-CCHHHHHHHHHHhCCcEE
Confidence 3689999998888888888888999999999988853 4445567888889999888765 488899999999999999
Q ss_pred EEcCCchhhHHHH
Q 046637 116 FVDYQLLPIAQGA 128 (301)
Q Consensus 116 i~~~~~~~~~~~~ 128 (301)
+........+.+.
T Consensus 189 ~~~Ps~~~~l~~~ 201 (443)
T 2y4o_A 189 LVTPSYMLNLIDE 201 (443)
T ss_dssp EECHHHHHHHHHH
T ss_pred EECHHHHHHHHHH
Confidence 9877666555443
|
| >1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A | Back alignment and structure |
|---|
Probab=91.30 E-value=4.1 Score=36.40 Aligned_cols=117 Identities=12% Similarity=-0.024 Sum_probs=77.6
Q ss_pred cCCccEEEEC---------CeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHH--HH-HHHHhhhccceeeec
Q 046637 27 YRDRPSVVYG---------DVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAM--YE-LHFGVPMAGAVLCTL 94 (301)
Q Consensus 27 ~~~~~al~~~---------~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~--~~-~~lA~~~~G~~~v~l 94 (301)
.|+.+|++.. +-.+|.+.+...+..... ..++.++|++....|-.-.+ .. .+++++..|+..+..
T Consensus 180 ~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~---~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~~ 256 (539)
T 1mdb_A 180 KSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVE---VCWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVVLS 256 (539)
T ss_dssp CTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHH---HHTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEEC
T ss_pred CcCceEEEEeCCCcCCCCcEEEEehHHHHHHHHHHHH---hhCCCCCCEEEEeecccccchhhHHHHHHHHHhCCEEEEC
Confidence 3566666641 147899988877665544 34788999998888865333 22 478888889888776
Q ss_pred CCCCCHHHHHHHHHhcCceEEEEcCCchhhHHHHHHHhccccCCCCceEEccC
Q 046637 95 NTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPE 147 (301)
Q Consensus 95 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 147 (301)
+ ....+.+...+++.++.+++........+.+..........+++.++.-+.
T Consensus 257 ~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~~gG~ 308 (539)
T 1mdb_A 257 P-SPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRDDLSSLQVLQVGGA 308 (539)
T ss_dssp S-SSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHCCCCCTTCCEEEEESS
T ss_pred C-CCCHHHHHHHHHHcCCeEEEccHHHHHHHHhCccccCCCccceeEEEEcCC
Confidence 4 578899999999999999988776665544433222211124565555443
|
| >3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A* | Back alignment and structure |
|---|
Probab=90.55 E-value=0.73 Score=39.00 Aligned_cols=86 Identities=14% Similarity=-0.013 Sum_probs=62.7
Q ss_pred eeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCC--CHHHHHHHHHhhhccceeeecCCCCCHH--------------
Q 046637 38 VQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPN--VPAMYELHFGVPMAGAVLCTLNTRHDSA-------------- 101 (301)
Q Consensus 38 ~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n--~~~~~~~~lA~~~~G~~~v~l~~~~~~~-------------- 101 (301)
..+|.+.+...+..++..+...|+.++|++....+- ........+++...|+.+++. ...+.
T Consensus 109 v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~~v~~~--~~dp~~~~~~~~~~~~~~~ 186 (369)
T 3hgu_A 109 VVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGAINKERALRLGGMFFSI--DIDPRWVKRSLSEGDTATV 186 (369)
T ss_dssp EEECHHHHHHHHHHHTTTTTTSTTCCCCEEEECSCCTTCHHHHHHHHHHHHTTSCEECC--CCCHHHHHHHHHTTCHHHH
T ss_pred EEECHHHHHHHHHHHHhhHHhhCCCCcceEEEecCCCchhhhHHHHHHHHHcCCEEECc--cCChHHHHHhhcccchhhh
Confidence 368999999888877777788899999999998886 223344455558888855554 33444
Q ss_pred ---------HHHHHHHhcCceEEEEcCCchhhH
Q 046637 102 ---------MVSVLLRHSEAKIIFVDYQLLPIA 125 (301)
Q Consensus 102 ---------~l~~~l~~~~~~~vi~~~~~~~~~ 125 (301)
.+.+.+++.++.+++........+
T Consensus 187 ~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l 219 (369)
T 3hgu_A 187 RKYTHHLVDQVQNTLMNQDIRFLVTTPPVLREL 219 (369)
T ss_dssp HHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHH
Confidence 666799999999998876655443
|
| >3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A* | Back alignment and structure |
|---|
Probab=90.44 E-value=3.4 Score=36.99 Aligned_cols=117 Identities=10% Similarity=0.024 Sum_probs=77.2
Q ss_pred cCCccEEEEC--C-------eeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHH---HHHHhhhccceeeec
Q 046637 27 YRDRPSVVYG--D-------VQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYE---LHFGVPMAGAVLCTL 94 (301)
Q Consensus 27 ~~~~~al~~~--~-------~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~---~~lA~~~~G~~~v~l 94 (301)
.++.+|++.. | -.+|.+.+...+...... .++.++|++....|..-.+-. .+++.+..|+..+..
T Consensus 189 ~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~---~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~~ 265 (544)
T 3o83_A 189 PADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEI---CGLNSNTRLLCALPAPHNFMLSSPGALGVLHAGGCVVMA 265 (544)
T ss_dssp CTTSEEEEEECCC--CCCCEEEEEHHHHHHHHHHHHHH---TTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEEC
T ss_pred CccceEEEEECCCcccCCceEEechHHHHHHHHHHHHH---hCCCCCCeEEEecCcceEeecchHHHHHHHHcCCEEEEC
Confidence 3566666641 1 468999998877666543 488999999988876544322 367788888877776
Q ss_pred CCCCCHHHHHHHHHhcCceEEEEcCCchhhHHHHHHHhccccCCCCceEEccC
Q 046637 95 NTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPE 147 (301)
Q Consensus 95 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 147 (301)
+ ....+.+...+++.++.++.........+.+..........+++.++.-+.
T Consensus 266 ~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gG~ 317 (544)
T 3o83_A 266 P-NPEPLNCFSIIQRHQVNMASLVPSAVIMWLEKAAQYKDQIQSLKLLQVGGA 317 (544)
T ss_dssp S-SCCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHTTTHHHHTTCCEEEEESS
T ss_pred C-CCCHHHHHHHHHHHCCCEEEechHHHHHHHhchhhccccCCcceEEEEcCC
Confidence 4 568888999999999999988776555443332211111125566555443
|
| >3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A | Back alignment and structure |
|---|
Probab=89.96 E-value=1.9 Score=38.68 Aligned_cols=100 Identities=12% Similarity=0.011 Sum_probs=72.6
Q ss_pred CCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHh---hCCCCCEEEEeccchhhhhhHHHHHHHHhCCeEEeeC-C
Q 046637 182 ECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFN---EMGLMPTYLWCVPMFHCNGWCLTWAVAAQGGTNVCQR-T 257 (301)
Q Consensus 182 ~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~---~~~~~~~~l~~~p~~h~~g~~~~~~~l~~g~~~v~~~-~ 257 (301)
++.++++.+..+.++ ..+|+..|...+......+ ++.++|++...+|-+- --+...++++..|+..+.+. .
T Consensus 34 p~~~a~~a~~~~~~~----~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~-e~~~~~lA~~~~Gav~vpl~~~ 108 (550)
T 3rix_A 34 ALVPGTIAFTDAHIE----VNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSL-QFFMPVLGALFIGVAVAPANDI 108 (550)
T ss_dssp HTSTTCEEEEETTTC----CEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCT-TTHHHHHHHHHHTCEEEECCTT
T ss_pred CCCceEEEeeecCCC----cEeEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcc-cHHHHHHHHHHcCCEEeecCCc
Confidence 345555544444333 4799999987776665544 6889999988888543 22334688899999988875 6
Q ss_pred CCHHHHHHHHHhcCcceecCChHHHHHHH
Q 046637 258 VNAKEIFDNITRHKVTHFGGAPTVLNMIA 286 (301)
Q Consensus 258 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l~ 286 (301)
..++.+...++..+++.+++.+.....+.
T Consensus 109 ~~~~~l~~~l~~~~~~~vi~~~~~~~~~~ 137 (550)
T 3rix_A 109 YNERELLNSMNISQPTVVFVSKKGLQKIL 137 (550)
T ss_dssp CCHHHHHHHHHHHCCSEEEECGGGHHHHH
T ss_pred CCHHHHHHHHHhcCCeEEEEcHHHHHHHH
Confidence 78899999999999999998887665543
|
| >3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A | Back alignment and structure |
|---|
Probab=89.43 E-value=4.4 Score=35.96 Aligned_cols=105 Identities=15% Similarity=0.111 Sum_probs=69.9
Q ss_pred eeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHH--HHHHHHhhhccceeeecCCCCCHHHHHHHHHhcCceEE
Q 046637 38 VQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAM--YELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKII 115 (301)
Q Consensus 38 ~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~--~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~v 115 (301)
-.+|.+.+...+..+... .++.++|++....|-.-.. ...+++++ .|+..+.. +....+.+...+++.++.++
T Consensus 188 V~~sh~~l~~~~~~~~~~---~~~~~~d~~l~~~p~~~~~~~~~~~~~~~-~G~~~v~~-~~~~~~~~~~~i~~~~~t~~ 262 (517)
T 3r44_A 188 VVHTHESVHSAASSWAST---IDVRYRDRLLLPLPMFHVAALTTVIFSAM-RGVTLISM-PQFDATKVWSLIVEERVCIG 262 (517)
T ss_dssp EEEEHHHHHHHHHHHHHH---SCCCTTCEEEECSCTTSHHHHHHHHHHHH-HTCEEEEC-SSCCHHHHHHHHHHTTCCEE
T ss_pred eeeeHHHHHHHHHHHHHh---cCCCCCCEEEEeCchHHHHHHHHHHHHHh-cCeEEEEe-CCCCHHHHHHHHHHhCCeEE
Confidence 468999988877766544 4889999999888875433 22345555 78777766 56789999999999999999
Q ss_pred EEcCCchhhHHHHHHHhccccCCCCceEEccC
Q 046637 116 FVDYQLLPIAQGAFEILSKTSAKLPLLVLVPE 147 (301)
Q Consensus 116 i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 147 (301)
.........+.+.........++++.++.-+.
T Consensus 263 ~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gGe 294 (517)
T 3r44_A 263 GAVPAILNFMRQVPEFAELDAPDFRYFITGGA 294 (517)
T ss_dssp EECHHHHHHHHHSHHHHHCCCTTCCEEEECSS
T ss_pred EeHHHHHHHHHhCcccccCCCCcccEEEECCC
Confidence 88776665544332221111124555555443
|
| >2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A* | Back alignment and structure |
|---|
Probab=88.94 E-value=2.8 Score=37.64 Aligned_cols=95 Identities=16% Similarity=0.194 Sum_probs=68.6
Q ss_pred CccEEEEC---------CeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHH--HHHHHHhhhccceeeecCCC
Q 046637 29 DRPSVVYG---------DVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAM--YELHFGVPMAGAVLCTLNTR 97 (301)
Q Consensus 29 ~~~al~~~---------~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~--~~~~lA~~~~G~~~v~l~~~ 97 (301)
+.+|++.. +-.+|.+.+...+......+...++.++|++....|-.-.+ ...+++.+ .|+..+..+ .
T Consensus 192 ~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l-~G~~~v~~~-~ 269 (548)
T 2d1s_A 192 EQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHHGFGMFTTLGYLI-CGFRVVMLT-K 269 (548)
T ss_dssp TCEEEEECCSSCSSSCCCEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHHHHHHHHH-TTCEEEECC-C
T ss_pred CCEEEEEeCCCCCCCCCEEEecHHHHHHHHHHhhchhhccCCCccceEEEeccHHHHHHHHHHHHHHh-cCcEEEEcC-C
Confidence 66777652 24789999887766655443336889999988887765332 33356667 888887774 5
Q ss_pred CCHHHHHHHHHhcCceEEEEcCCchhhH
Q 046637 98 HDSAMVSVLLRHSEAKIIFVDYQLLPIA 125 (301)
Q Consensus 98 ~~~~~l~~~l~~~~~~~vi~~~~~~~~~ 125 (301)
...+.+...+++.++.+++........+
T Consensus 270 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l 297 (548)
T 2d1s_A 270 FDEETFLKTLQDYKCTSVILVPTLFAIL 297 (548)
T ss_dssp CCHHHHHHHHHHTTEEEEEECHHHHHHH
T ss_pred CCHHHHHHHHHHcCCcEEEecHHHHHHH
Confidence 7889999999999999999876655443
|
| >3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=88.63 E-value=4.9 Score=35.43 Aligned_cols=96 Identities=10% Similarity=0.105 Sum_probs=70.2
Q ss_pred cCCccEEEEC---------CeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHH-HHHHHHHhhhccceeeecCC
Q 046637 27 YRDRPSVVYG---------DVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPA-MYELHFGVPMAGAVLCTLNT 96 (301)
Q Consensus 27 ~~~~~al~~~---------~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~-~~~~~lA~~~~G~~~v~l~~ 96 (301)
.++.+|++.. +-.+|.+.+...+..+.. ..++.++|++....|-.-. .+..+++++..|+..+..+
T Consensus 161 ~~~d~a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~~---~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~- 236 (501)
T 3ipl_A 161 NLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKE---SLGFDRDTNWLSVLPIYHISGLSVLLRAVIEGFTVRIVD- 236 (501)
T ss_dssp CTTSEEEEEECCTTTSCCCEEEEEHHHHHHHHHHHHH---HTCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECS-
T ss_pred CCCCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHH---hhCCCccCEEEEeCcHHHHHHHHHHHHHHHcCceEEeCC-
Confidence 4566776651 146899998877766543 4588999999988876432 3444677888898877765
Q ss_pred CCCHHHHHHHHHhcCceEEEEcCCchhhHH
Q 046637 97 RHDSAMVSVLLRHSEAKIIFVDYQLLPIAQ 126 (301)
Q Consensus 97 ~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~ 126 (301)
..+.+.+...+++.++.+++........+.
T Consensus 237 ~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~ 266 (501)
T 3ipl_A 237 KFNAEQILTMIKNERITHISLVPQTLNWLM 266 (501)
T ss_dssp SCCHHHHHHHHHHSCCCEEEECHHHHHHHH
T ss_pred CCCHHHHHHHHHHcCCcEEEchHHHHHHHH
Confidence 578999999999999999988766555443
|
| >3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304} | Back alignment and structure |
|---|
Probab=86.59 E-value=8.6 Score=34.36 Aligned_cols=103 Identities=9% Similarity=-0.129 Sum_probs=72.7
Q ss_pred CCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHh---hCCCCCEEEEeccchhhhhhHHHHHHHHhCCeEEeeC-
Q 046637 181 DECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFN---EMGLMPTYLWCVPMFHCNGWCLTWAVAAQGGTNVCQR- 256 (301)
Q Consensus 181 ~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~---~~~~~~~~l~~~p~~h~~g~~~~~~~l~~g~~~v~~~- 256 (301)
.++.++++....+.. .-....+|+..|...+..+...+ ++.++|++...+|-+. --....++++..|+..+.+.
T Consensus 32 ~p~~~A~~~~~~~~~-~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~-~~~~~~lA~~~~G~~~vpl~~ 109 (549)
T 3g7s_A 32 FGEKTAIISAEPKFP-SEFPESMNFLEICEVTKKLASGISRKGVRKGEHVGVCIPNSI-DYVMTIYALWRVAATPVPINP 109 (549)
T ss_dssp HTTSEEEEEESSCCC-CSSCSEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSH-HHHHHHHHHHHTTCEEEECCT
T ss_pred CCCceEEEeCCCccc-ccccceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCH-HHHHHHHHHHHhCCEEEccCC
Confidence 356666665432111 11235789999987776665544 6789999988887543 22334688899999988885
Q ss_pred CCCHHHHHHHHHhcCcceecCChHHHHHH
Q 046637 257 TVNAKEIFDNITRHKVTHFGGAPTVLNMI 285 (301)
Q Consensus 257 ~~~~~~~~~~i~~~~~t~~~~~P~~~~~l 285 (301)
...++.+...++..+++.+++.+.....+
T Consensus 110 ~~~~~~l~~il~~~~~~~~i~~~~~~~~~ 138 (549)
T 3g7s_A 110 MYKSFELEHILNDSEATTLVVHSMLYENF 138 (549)
T ss_dssp TCCHHHHHHHHHHTTCSEEEEEGGGHHHH
T ss_pred CCCHHHHHHHHHhcCCCEEEEChHHHHHH
Confidence 67788999999999999999887665544
|
| >1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A* | Back alignment and structure |
|---|
Probab=86.48 E-value=6.4 Score=35.16 Aligned_cols=108 Identities=17% Similarity=0.129 Sum_probs=70.6
Q ss_pred eeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHH-HHHHHHHhhhccceeeecCCCCCHHHHHHHHHhcCceEEE
Q 046637 38 VQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPA-MYELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIF 116 (301)
Q Consensus 38 ~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~-~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi 116 (301)
-.+|.+.+...+.... .....++.++|++....|-.-. .....++++..|+..+..++..+++.+...+++.++.+++
T Consensus 194 V~~sh~~l~~~~~~~~-~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~ 272 (541)
T 1v25_A 194 VVYSHRALVLHSLAAS-LVDGTALSEKDVVLPVVPMFHVNAWCLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTA 272 (541)
T ss_dssp EEEEHHHHHHHHHHTT-STTTTCCCTTCEEEECSCTTSHHHHTHHHHHHHHTCEEEECTTCCSHHHHHHHHHHTTCCEEE
T ss_pred eeeehHHHHHHHhhhh-hcccccCCCCCEEEEeccchhhhHHHHHHHHHhcCceEEeeCCCCCHHHHHHHHHhcCeeEEe
Confidence 3689988765443211 1123478899999888876433 2234567788898888877667899999999999999999
Q ss_pred EcCCchhhHHHHHHHhccccCCCCceEEcc
Q 046637 117 VDYQLLPIAQGAFEILSKTSAKLPLLVLVP 146 (301)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 146 (301)
........+.+..........+++.++.-.
T Consensus 273 ~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG 302 (541)
T 1v25_A 273 GVPTVWLALADYLESTGHRLKTLRRLVVGG 302 (541)
T ss_dssp ECHHHHHHHHHHHHHHTCCCSSCCEEEECS
T ss_pred cchHHHHHHHhhhhccCCcchhccEEEECC
Confidence 877666555443332221112456555544
|
| >3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A* | Back alignment and structure |
|---|
Probab=85.53 E-value=6.5 Score=35.04 Aligned_cols=98 Identities=8% Similarity=0.025 Sum_probs=70.5
Q ss_pred CCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHh---hCCCCCEEEEeccchhhhhhHHHHHHHHhCCeEEeeC
Q 046637 180 KDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFN---EMGLMPTYLWCVPMFHCNGWCLTWAVAAQGGTNVCQR 256 (301)
Q Consensus 180 ~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~---~~~~~~~~l~~~p~~h~~g~~~~~~~l~~g~~~v~~~ 256 (301)
..++.++++. +.+| ..+|+..+...+......+ ++.++|++...+|-.- --+...++++..|+..+.+.
T Consensus 34 ~~p~~~a~~~---~~~~----~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~-~~~~~~la~~~~Gav~vpl~ 105 (536)
T 3ni2_A 34 NHSSKPCLIN---GANG----DVYTYADVELTARRVASGLNKIGIQQGDVIMLFLPSSP-EFVLAFLGASHRGAIITAAN 105 (536)
T ss_dssp GSTTSEEEEE---TTTC----CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSH-HHHHHHHHHHHHTCEEEECC
T ss_pred cCCCceEEEE---CCCC----CEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcH-HHHHHHHHHHHhCCEEeccC
Confidence 3456676653 2222 5689999987766665544 6789999988888643 22334688899999988875
Q ss_pred -CCCHHHHHHHHHhcCcceecCChHHHHHH
Q 046637 257 -TVNAKEIFDNITRHKVTHFGGAPTVLNMI 285 (301)
Q Consensus 257 -~~~~~~~~~~i~~~~~t~~~~~P~~~~~l 285 (301)
...++.+...++..++..+++.+.....+
T Consensus 106 ~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~ 135 (536)
T 3ni2_A 106 PFSTPAELAKHAKASRAKLLITQACYYEKV 135 (536)
T ss_dssp TTCCHHHHHHHHHHHTEEEEEECGGGTHHH
T ss_pred CCCCHHHHHHHHHhcCCEEEEEChHHHHHH
Confidence 56788999999999999998877554443
|
| >3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0 | Back alignment and structure |
|---|
Probab=85.41 E-value=6.9 Score=34.54 Aligned_cols=94 Identities=15% Similarity=-0.072 Sum_probs=70.6
Q ss_pred CCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHh---hCCCCCEEEEeccchhhhhhHHHHHHHHhCCeEEeeC-
Q 046637 181 DECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFN---EMGLMPTYLWCVPMFHCNGWCLTWAVAAQGGTNVCQR- 256 (301)
Q Consensus 181 ~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~---~~~~~~~~l~~~p~~h~~g~~~~~~~l~~g~~~v~~~- 256 (301)
.++.++++. .+..+|+..|...+......+ ++.++|++...+|-.- --....++++..|+..+.+.
T Consensus 19 ~pd~~Al~~---------~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~-~~~~~~lA~~~~Ga~~vpl~~ 88 (509)
T 3ivr_A 19 FPDRTAFMV---------DGVRLTHRDYLARAERLASGLLRDGVHTGDRVAILSQNCS-EMIELIGAVALIGAILLPVNY 88 (509)
T ss_dssp STTSEEEEE---------TTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCH-HHHHHHHHHHHTTCEEEECCT
T ss_pred CCCceEEEE---------CCcEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCH-HHHHHHHHHHHhCCEEEecCC
Confidence 456666654 136799999988777666554 6789999988887543 22334688899999988875
Q ss_pred CCCHHHHHHHHHhcCcceecCChHHHHH
Q 046637 257 TVNAKEIFDNITRHKVTHFGGAPTVLNM 284 (301)
Q Consensus 257 ~~~~~~~~~~i~~~~~t~~~~~P~~~~~ 284 (301)
...++.+...++..++..+++.+.....
T Consensus 89 ~~~~~~l~~~l~~~~~~~vi~~~~~~~~ 116 (509)
T 3ivr_A 89 RLNADEIAFVLGDGAPSVVVAGTDYRDI 116 (509)
T ss_dssp TSCHHHHHHHHHHHCEEEEEECSTTHHH
T ss_pred CCCHHHHHHHHHhcCceEEEECcchhhh
Confidence 5678899999999999999988776555
|
| >3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=84.77 E-value=20 Score=32.52 Aligned_cols=87 Identities=9% Similarity=0.047 Sum_probs=63.8
Q ss_pred eeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHH--HH-HHHHhhhccceeeecCCCCCHHHHHHHHHhcCceE
Q 046637 38 VQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAM--YE-LHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKI 114 (301)
Q Consensus 38 ~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~--~~-~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ 114 (301)
-.+|.+.+...+...... .++.+++++....+-...+ .. .+++++..|+..+..+ ......+...+++.++.+
T Consensus 202 V~~th~~~~~~~~~~~~~---~~~~~~~~~l~~~p~~~~~~~~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~ 277 (617)
T 3rg2_A 202 IPRTHNDYYYSVRRSVEI---CQFTQQTRYLCAIPAAHNYAMSSPGSLGVFLAGGTVVLAA-DPSATLCFPLIEKHQVNV 277 (617)
T ss_dssp EEEEHHHHHHHHHHHHHH---HTCCTTCEEEECSCTTSHHHHHSSHHHHHHHHTCEEEECS-SCCHHHHHHHHHHTTCCE
T ss_pred eehhHHHHHHHHHHHHHh---cCCCCcceEEEeccchhhhhhhHHHHHHHHHcCCEEEEeC-CCCHHHHHHHHHHhCCcE
Confidence 478999888777665443 4788999999988855433 22 3677788888777764 467888889999999999
Q ss_pred EEEcCCchhhHHHH
Q 046637 115 IFVDYQLLPIAQGA 128 (301)
Q Consensus 115 vi~~~~~~~~~~~~ 128 (301)
+.........+.+.
T Consensus 278 ~~~~P~~~~~l~~~ 291 (617)
T 3rg2_A 278 TALVPPAVSLWLQA 291 (617)
T ss_dssp EEECHHHHHHHHHH
T ss_pred EEcchHHHHHHHHh
Confidence 98877665554443
|
| >4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A* | Back alignment and structure |
|---|
Probab=83.86 E-value=12 Score=32.96 Aligned_cols=94 Identities=13% Similarity=-0.094 Sum_probs=67.6
Q ss_pred CCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHh---hCCCCCEEEEeccchhhhhhHHHHHHHHhCCeEEeeC-
Q 046637 181 DECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFN---EMGLMPTYLWCVPMFHCNGWCLTWAVAAQGGTNVCQR- 256 (301)
Q Consensus 181 ~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~---~~~~~~~~l~~~p~~h~~g~~~~~~~l~~g~~~v~~~- 256 (301)
.++.++.++...+ +-.+|+..|...+......+ ++.++|++...+|-+- --+...++++..|+..+.+.
T Consensus 13 ~p~~~a~~~~~~~------~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~-~~~~~~lA~~~~Ga~~vpl~~ 85 (503)
T 4fuq_A 13 LDDPHKLAIETAA------GDKISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSV-EALVLYLATVRAGGVYLPLNT 85 (503)
T ss_dssp CSCTTSEEEEETT------CCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCH-HHHHHHHHHHHTTCEEEECCT
T ss_pred CCCCceEEEecCC------CcEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCH-HHHHHHHHHHHcCcEEEecCC
Confidence 3445555544322 24699999987776665544 6789999988887543 22334688899999988875
Q ss_pred CCCHHHHHHHHHhcCcceecCChHH
Q 046637 257 TVNAKEIFDNITRHKVTHFGGAPTV 281 (301)
Q Consensus 257 ~~~~~~~~~~i~~~~~t~~~~~P~~ 281 (301)
...++.+...++..++..+++.+..
T Consensus 86 ~~~~~~l~~il~~~~~~~vi~~~~~ 110 (503)
T 4fuq_A 86 AYTLHELDYFITDAEPKIVVCDPSK 110 (503)
T ss_dssp TCCHHHHHHHHHHHCCSEEEECGGG
T ss_pred CCCHHHHHHHHHhcCCcEEEECchh
Confidence 5678899999999999999887643
|
| >3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A* | Back alignment and structure |
|---|
Probab=82.92 E-value=3.1 Score=36.88 Aligned_cols=83 Identities=13% Similarity=0.080 Sum_probs=62.3
Q ss_pred eeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHH-HHHHHHHhhhccceeeecCCC--CCHHHHHHHHHhcCceE
Q 046637 38 VQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPA-MYELHFGVPMAGAVLCTLNTR--HDSAMVSVLLRHSEAKI 114 (301)
Q Consensus 38 ~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~-~~~~~lA~~~~G~~~v~l~~~--~~~~~l~~~l~~~~~~~ 114 (301)
-.+|.+.+...+..... ..++.++|++....|-+.. .+..+++++..|+..+.+++. ..++.+...+++.++.+
T Consensus 162 v~~th~~l~~~~~~~~~---~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~ 238 (512)
T 3fce_A 162 VQITYNCLVSFTKWAVE---DFNLQTGQVFLNQAPFSFDLSVMDIYPSLVTGGTLWAIDKDMIARPKDLFASLEQSDIQV 238 (512)
T ss_dssp EEEEHHHHHHHHHHHHH---HTTCCSSCEEEECSCTTSGGGHHHHHHHHHTTCEEEECCHHHHHSHHHHHHHHHHHCCCE
T ss_pred EEEehHHHHHHHHHHHH---hcCCCCCCEEEEeCCccHhHHHHHHHHHHhCCCEEEECCHHHhhCHHHHHHHHHHcCCcE
Confidence 46899988877665543 4588999999998886543 344577888889888877653 57788999999999998
Q ss_pred EEEcCCchh
Q 046637 115 IFVDYQLLP 123 (301)
Q Consensus 115 vi~~~~~~~ 123 (301)
++.......
T Consensus 239 ~~~~P~~~~ 247 (512)
T 3fce_A 239 WTSTPSFAE 247 (512)
T ss_dssp EEECHHHHH
T ss_pred EEecHHHHH
Confidence 888755443
|
| >1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1 | Back alignment and structure |
|---|
Probab=82.69 E-value=14 Score=33.20 Aligned_cols=84 Identities=11% Similarity=-0.035 Sum_probs=64.0
Q ss_pred eeechHHHHHHHHHHHHHh---hCCCCCEEEEeccchhhhhhHHHHHHHHhCCeEEeeC-CCCHHHHHHHHHhcCcceec
Q 046637 201 VICSHRGAYLNSLAAALFN---EMGLMPTYLWCVPMFHCNGWCLTWAVAAQGGTNVCQR-TVNAKEIFDNITRHKVTHFG 276 (301)
Q Consensus 201 v~~s~~~l~~~~~~~~~~~---~~~~~~~~l~~~p~~h~~g~~~~~~~l~~g~~~v~~~-~~~~~~~~~~i~~~~~t~~~ 276 (301)
..+|+..|...+......+ ++.++|++...+|-.- --....++++..|+..+.+. ...++.+...++..++..++
T Consensus 63 ~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~-e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~il~~~~~~~li 141 (563)
T 1amu_A 63 EQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSI-DLFIGILAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLL 141 (563)
T ss_dssp EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSH-HHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEE
T ss_pred ceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCH-HHHHHHHHHHHhCCEEEEeCCCCcHHHHHHHHHhcCCCEEE
Confidence 4799999987766655543 6789999988887543 22334688899999988875 56788999999999999999
Q ss_pred CChHHHHHH
Q 046637 277 GAPTVLNMI 285 (301)
Q Consensus 277 ~~P~~~~~l 285 (301)
+.+.....+
T Consensus 142 ~~~~~~~~~ 150 (563)
T 1amu_A 142 TQKHLVHLI 150 (563)
T ss_dssp ECGGGHHHH
T ss_pred EcCchhhhh
Confidence 888665544
|
| >3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans} | Back alignment and structure |
|---|
Probab=82.63 E-value=12 Score=33.80 Aligned_cols=94 Identities=12% Similarity=0.054 Sum_probs=69.2
Q ss_pred CCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHh---hCCCCCEEEEeccchhhhhhHHHHHHHHhCCeEEeeC-
Q 046637 181 DECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFN---EMGLMPTYLWCVPMFHCNGWCLTWAVAAQGGTNVCQR- 256 (301)
Q Consensus 181 ~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~---~~~~~~~~l~~~p~~h~~g~~~~~~~l~~g~~~v~~~- 256 (301)
.++.+|++.... .| ....+|+..|...+......+ ++.++|++...+|-.- --+...++++..|+..+.+.
T Consensus 69 ~pd~~Al~~~~~--~g--~~~~~Ty~eL~~~~~~~A~~L~~~Gv~~Gd~V~l~~~~~~-e~~~~~lA~~~~Gav~vpl~~ 143 (580)
T 3etc_A 69 SPEKLAMIWCDD--YG--NEKIFTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRY-DFWYCMLGLHKLGAIAVPATH 143 (580)
T ss_dssp CTTCEEEEEEES--SS--CEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECTTCT-HHHHHHHHHHHHTCEEEECCT
T ss_pred CCCCEEEEEEcC--CC--CEeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCH-HHHHHHHHHHhCCEEEEeCCc
Confidence 567778776532 12 357899999987766655544 6889999998888543 22334688899999988775
Q ss_pred CCCHHHHHHHHHhcCcceecCCh
Q 046637 257 TVNAKEIFDNITRHKVTHFGGAP 279 (301)
Q Consensus 257 ~~~~~~~~~~i~~~~~t~~~~~P 279 (301)
...++.+...++..++..+++.+
T Consensus 144 ~~~~~~l~~~l~~~~~~~ii~~~ 166 (580)
T 3etc_A 144 MLKTRDIVYRIEKAGLKMIVCIA 166 (580)
T ss_dssp TCCHHHHHHHHHHHTCCEEEEES
T ss_pred cCCHHHHHHHHHhcCCCEEEEec
Confidence 67889999999999999988754
|
| >3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A* | Back alignment and structure |
|---|
Probab=82.45 E-value=16 Score=32.91 Aligned_cols=100 Identities=13% Similarity=0.089 Sum_probs=71.8
Q ss_pred CCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHh----hCCCCCEEEEeccchhhhhhHHHHHHHHhCCeEEeeC
Q 046637 181 DECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFN----EMGLMPTYLWCVPMFHCNGWCLTWAVAAQGGTNVCQR 256 (301)
Q Consensus 181 ~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~----~~~~~~~~l~~~p~~h~~g~~~~~~~l~~g~~~v~~~ 256 (301)
.++.++++.... .| ....+|+..|...+......+ ++.++|++...+|-.- --+...++++..|+..+.+.
T Consensus 56 ~p~~~al~~~~~--~g--~~~~~Ty~el~~~~~~lA~~L~~~~Gv~~gd~V~i~~~n~~-e~~~~~lA~~~~Ga~~vpl~ 130 (570)
T 3c5e_A 56 RPPSPALWWVNG--KG--KELMWNFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVP-EWWLVILGCIRAGLIFMPGT 130 (570)
T ss_dssp SCCCEEEEEECS--SS--CEEEEEHHHHHHHHHHHHHHHHTTTCCCTTCEEEEECCSCH-HHHHHHHHHHHHTCEEEECC
T ss_pred CCCceEEEEEcC--CC--ceeEEeHHHHHHHHHHHHHHHHHccCCCCCCEEEEEcCCCH-HHHHHHHHHHHcCeEEEecC
Confidence 556777765421 12 246799999987776665544 6678999888887543 22334688899999988875
Q ss_pred -CCCHHHHHHHHHhcCcceecCChHHHHHH
Q 046637 257 -TVNAKEIFDNITRHKVTHFGGAPTVLNMI 285 (301)
Q Consensus 257 -~~~~~~~~~~i~~~~~t~~~~~P~~~~~l 285 (301)
...++.+...++..++..+++.+.....+
T Consensus 131 ~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~ 160 (570)
T 3c5e_A 131 IQMKSTDILYRLQMSKAKAIVAGDEVIQEV 160 (570)
T ss_dssp TTCCHHHHHHHHHHHTCSEEEEETTTHHHH
T ss_pred CCCCHHHHHHHHHhcCCeEEEechHHHHHH
Confidence 56788999999999999998877665544
|
| >3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A | Back alignment and structure |
|---|
Probab=82.08 E-value=14 Score=32.02 Aligned_cols=108 Identities=8% Similarity=-0.054 Sum_probs=74.8
Q ss_pred CCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhhC--CCCCEEEEeccchhhhhhHHHHHHHHhCCeEEeeC-
Q 046637 180 KDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEM--GLMPTYLWCVPMFHCNGWCLTWAVAAQGGTNVCQR- 256 (301)
Q Consensus 180 ~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~--~~~~~~l~~~p~~h~~g~~~~~~~l~~g~~~v~~~- 256 (301)
..++.+|++.........-....+|+..|...+..+...+.- .++|++...++-.- --+...++++..|+..|.+.
T Consensus 36 ~~pd~~Al~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~g~~gd~V~i~~~n~~-e~~~~~lA~~~~G~v~vpl~~ 114 (480)
T 3t5a_A 36 LQPHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSRCGSTGDRVVISAPQGL-EYVVAFLGALQAGRIAVPLSV 114 (480)
T ss_dssp HSTTSEEEEEEETTTCTTCEEEEEEHHHHHHHHHHHHHHHTTSSCTTCEEEEECCSSH-HHHHHHHHHHHTTCEEEEECS
T ss_pred hCCCCceEEEecccCCCCCceEEEcHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCcH-HHHHHHHHHHHhCcEEEeeCC
Confidence 346677776654221111234789999998887777665531 37888888777543 22334688899999988875
Q ss_pred ---CCCHHHHHHHHHhcCcceecCChHHHHHHHcC
Q 046637 257 ---TVNAKEIFDNITRHKVTHFGGAPTVLNMIANA 288 (301)
Q Consensus 257 ---~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~ 288 (301)
....+++...++..++..+++.+.....+.+.
T Consensus 115 ~~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~ 149 (480)
T 3t5a_A 115 PQGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQH 149 (480)
T ss_dssp CCSCTTCCHHHHHHHHHCCSEEEECTTTHHHHHHT
T ss_pred CCccchHHHHHHHHHhCCCCEEEeChhHHHHHHHH
Confidence 34567889999999999999988877766543
|
| >1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X* | Back alignment and structure |
|---|
Probab=81.87 E-value=17 Score=32.01 Aligned_cols=97 Identities=13% Similarity=-0.029 Sum_probs=68.4
Q ss_pred CCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHh---hCCCCCEEEEeccchhhhhhHHHHHHHHhCCeEEeeC-
Q 046637 181 DECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFN---EMGLMPTYLWCVPMFHCNGWCLTWAVAAQGGTNVCQR- 256 (301)
Q Consensus 181 ~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~---~~~~~~~~l~~~p~~h~~g~~~~~~~l~~g~~~v~~~- 256 (301)
.++.++++.. . .+..+|+..|...+......+ ++.++|++...+|-.-- -+...++++..|+..+.++
T Consensus 15 ~p~~~a~~~~---~----~~~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~~~~~-~~~~~lA~~~~G~~~vpl~~ 86 (504)
T 1t5h_X 15 APDHCALAVP---A----RGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSAD-VVIAILALHRLGAVPALLNP 86 (504)
T ss_dssp CTTSEEEEET---T----TTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHH-HHHHHHHHHHHTCEEEEECT
T ss_pred CCCceEEEEc---C----CCceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHH-HHHHHHHHHHhCcEEEecCC
Confidence 4556666532 1 236799999987766665544 67889999888875432 2334688899999988875
Q ss_pred CCCHHHHHHHHHhcCcceecC--ChHHHHHH
Q 046637 257 TVNAKEIFDNITRHKVTHFGG--APTVLNMI 285 (301)
Q Consensus 257 ~~~~~~~~~~i~~~~~t~~~~--~P~~~~~l 285 (301)
...++.+...+++.+++.+++ .+.....+
T Consensus 87 ~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~ 117 (504)
T 1t5h_X 87 RLKSAELAELIKRGEMTAAVIAVGRQVADAI 117 (504)
T ss_dssp TSCHHHHHHHHHHTTCSEEEECC--CHHHHH
T ss_pred ccChHHHHHHHhhcCCcEEEEecchhhhhhh
Confidence 567889999999999999888 66555544
|
| >1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A* | Back alignment and structure |
|---|
Probab=81.70 E-value=17 Score=33.24 Aligned_cols=94 Identities=13% Similarity=-0.072 Sum_probs=68.3
Q ss_pred CCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHH---hhCCCCCEEEEeccchhhhhhHHHHHHHHhCCeEEee-CC
Q 046637 182 ECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALF---NEMGLMPTYLWCVPMFHCNGWCLTWAVAAQGGTNVCQ-RT 257 (301)
Q Consensus 182 ~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~---~~~~~~~~~l~~~p~~h~~g~~~~~~~l~~g~~~v~~-~~ 257 (301)
++.+|++.. +..+| ....+|+..|...+..+... .++.++|++...+|..-- -....++++..|+..+.+ +.
T Consensus 90 pd~~Al~~~-~~~~~--~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e-~vva~lA~~~~Gav~vpl~~~ 165 (652)
T 1pg4_A 90 GDRTAIIWE-GDDTS--QSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPE-AAVAMLACARIGAVHSVIFGG 165 (652)
T ss_dssp TTSEEEEEE-CSSTT--CEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHH-HHHHHHHHHHHTCEEEECCTT
T ss_pred CCceEEEEE-cCCCC--ceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHH-HHHHHHHHHHcCcEEEecCCC
Confidence 566676643 22122 34679999998776665554 468899999998886532 233568889999988877 47
Q ss_pred CCHHHHHHHHHhcCcceecCCh
Q 046637 258 VNAKEIFDNITRHKVTHFGGAP 279 (301)
Q Consensus 258 ~~~~~~~~~i~~~~~t~~~~~P 279 (301)
+.++.+...++..++..+++..
T Consensus 166 ~~~~~l~~~l~~~~~~~li~~~ 187 (652)
T 1pg4_A 166 FSPEAVAGCIIDSSSRLVITAD 187 (652)
T ss_dssp SCHHHHHHHHHHHTCSEEEEES
T ss_pred CCHHHHHHHHHhcCCCEEEEcC
Confidence 8899999999999999888754
|
| >3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A* | Back alignment and structure |
|---|
Probab=81.21 E-value=10 Score=34.16 Aligned_cols=96 Identities=7% Similarity=-0.045 Sum_probs=68.9
Q ss_pred cCCccEEEEC---------CeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHH--HHHHHhhhccceeeecC
Q 046637 27 YRDRPSVVYG---------DVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMY--ELHFGVPMAGAVLCTLN 95 (301)
Q Consensus 27 ~~~~~al~~~---------~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~--~~~lA~~~~G~~~v~l~ 95 (301)
.++.+|++.. +-.+|.+.+...+..... ..++.++|++....|-.-.+- ..+++.+..|+..+...
T Consensus 165 ~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~---~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~ 241 (590)
T 3kxw_A 165 KSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFT---SFHMNDETIIFSWLPPHHDMGLIGCILTPIYGGIQAIMMS 241 (590)
T ss_dssp CTTSEEEEEECSSCSSSCCEEEEEHHHHHHHHHHHHH---HTTCCTTCEEEECSCTTSHHHHHTTTHHHHHHTCEEEECC
T ss_pred CCCCeEEEEeCcCCCCCceEEEeeHHHHHHHHHHHHH---hhCCCCcCeEEEecCCCcchhhHHHHHHHHhcCceEEEeC
Confidence 3566676651 147899999888776644 458899999999888765433 33678888998888776
Q ss_pred CCC---CHHHHHHHHHhcCceEEEEcCCchhhH
Q 046637 96 TRH---DSAMVSVLLRHSEAKIIFVDYQLLPIA 125 (301)
Q Consensus 96 ~~~---~~~~l~~~l~~~~~~~vi~~~~~~~~~ 125 (301)
+.. .++.+...+++.++.++.........+
T Consensus 242 ~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l 274 (590)
T 3kxw_A 242 PFSFLQNPLSWLKHITKYKATISGSPNFAYDYC 274 (590)
T ss_dssp HHHHHHCTHHHHHHHHHHTCSEEEECTHHHHHH
T ss_pred HHHHHHCHHHHHHHHHHhCCeeecCChhHHHHH
Confidence 542 567888899999999887765444443
|
| >1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1 | Back alignment and structure |
|---|
Probab=81.19 E-value=17 Score=33.41 Aligned_cols=97 Identities=10% Similarity=0.007 Sum_probs=69.9
Q ss_pred CCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHh----hCCCCCEEEEeccchhhhhhHHHHHHHHhCCeEEee
Q 046637 180 KDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFN----EMGLMPTYLWCVPMFHCNGWCLTWAVAAQGGTNVCQ 255 (301)
Q Consensus 180 ~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~----~~~~~~~~l~~~p~~h~~g~~~~~~~l~~g~~~v~~ 255 (301)
..++.+|++... ...| ....+|+..|...+......+ ++.++|++...+|..- -.....++++..|+..+.+
T Consensus 94 ~~pd~~Al~~~~-~~~~--~~~~~TY~eL~~~v~~lA~~L~~~~Gv~~Gd~V~i~~~~~~-e~v~a~lA~~~~Gav~vpl 169 (663)
T 1ry2_A 94 KTPNKKAIIFEG-DEPG--QGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVP-EAIITLLAISRIGAIHSVV 169 (663)
T ss_dssp TCTTSEEEEEEC-SSTT--CCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSH-HHHHHHHHHHHTTCEEEEC
T ss_pred cCCCceEEEEEc-CCCC--ceEEEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCH-HHHHHHHHHHHcCCEEEee
Confidence 345677776442 2122 346799999987776665544 5678999999988643 2233468889999988877
Q ss_pred -CCCCHHHHHHHHHhcCcceecCChH
Q 046637 256 -RTVNAKEIFDNITRHKVTHFGGAPT 280 (301)
Q Consensus 256 -~~~~~~~~~~~i~~~~~t~~~~~P~ 280 (301)
+.+.++.+...++..++.++++.+.
T Consensus 170 ~~~~~~~~l~~~l~~~~~~~li~~~~ 195 (663)
T 1ry2_A 170 FAGFSSNSLRDRINDGDSKVVITTDE 195 (663)
T ss_dssp CTTSCHHHHHHHHHHHTCSEEEEESB
T ss_pred CCCCCHHHHHHHHHhcCCeEEEEccc
Confidence 4788999999999999999987653
|
| >3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A* | Back alignment and structure |
|---|
Probab=80.37 E-value=6.5 Score=34.78 Aligned_cols=84 Identities=12% Similarity=0.086 Sum_probs=62.5
Q ss_pred eeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHH-HHHHHHHhhhccceeeecCCC--CCHHHHHHHHHhcCceE
Q 046637 38 VQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPA-MYELHFGVPMAGAVLCTLNTR--HDSAMVSVLLRHSEAKI 114 (301)
Q Consensus 38 ~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~-~~~~~lA~~~~G~~~v~l~~~--~~~~~l~~~l~~~~~~~ 114 (301)
-.+|.+.+...+..+.. ..++.++|++....|-+.. .+..+++++..|+..+..+.. ...+.+...+++.++.+
T Consensus 161 V~~sh~~l~~~~~~~~~---~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~ 237 (511)
T 3e7w_A 161 VQISAANLQSFTDWICA---DFPVSGGKIFLNQAPFSFDLSVMDLYPCLQSGGTLHCVTKDAVNKPKVLFEELKKSGLNV 237 (511)
T ss_dssp EEEEHHHHHHHHHHHHH---HSTTTTTCEEEECSCTTSTHHHHHHHHHHHTTCEEEECCHHHHHSHHHHHHHHHHHCCSE
T ss_pred EEEcHHHHHHHHHHHHH---hcCCCccceEEEeCCccHHHHHHHHHHHHhcCCEEEEcChhhhcCHHHHHHHHHHcCCcE
Confidence 46899998877665543 4578899999988886543 344578888899888777543 56788999999999998
Q ss_pred EEEcCCchhh
Q 046637 115 IFVDYQLLPI 124 (301)
Q Consensus 115 vi~~~~~~~~ 124 (301)
++........
T Consensus 238 ~~~~P~~~~~ 247 (511)
T 3e7w_A 238 WTSTPSFVQM 247 (511)
T ss_dssp EEECHHHHHH
T ss_pred EEecHHHHHH
Confidence 8887655443
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 301 | ||||
| d1pg4a_ | 643 | e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella en | 8e-46 | |
| d1ry2a_ | 640 | e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast | 3e-38 | |
| d1v25a_ | 534 | e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0 | 8e-38 | |
| d1lcia_ | 541 | e.23.1.1 (A:) Luciferase {Firefly (Photinus pyrali | 3e-34 | |
| d1mdba_ | 536 | e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {B | 5e-32 | |
| d1amua_ | 514 | e.23.1.1 (A:) Phenylalanine activating domain of g | 2e-30 | |
| d3cw9a1 | 503 | e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alc | 5e-29 |
| >d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]} Length = 643 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Salmonella enterica [TaxId: 28901]
Score = 161 bits (409), Expect = 8e-46
Identities = 54/291 (18%), Positives = 101/291 (34%), Gaps = 23/291 (7%)
Query: 20 LERSAVVYRDRPSVVY------GDVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPN 73
L+R DR ++++ +++E H+ + A+ L LGI GDVVA P
Sbjct: 78 LDRHLQENGDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPM 137
Query: 74 VPAMYELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAF---- 129
VP GAV + V+ + S ++++ + + +
Sbjct: 138 VPEAAVAMLACARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKN 197
Query: 130 ---EILSKTSAKLPLLVLVPECGEPVSTVASSSGNLEYESLLAIGKLREVRRPKDECDPI 186
+ + + ++++ G + +L + L+ + DP+
Sbjct: 198 VDDALKNPNVTSVEHVIVLKRTGSDID--WQEGRDLWWRDLIEKASPEHQPEAMNAEDPL 255
Query: 187 ALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMP--TYLWCVPMFHCNGWC-LTW 243
+ YTSG+T PKGV+ + G YL A P Y + G L +
Sbjct: 256 FILYTSGSTGKPKGVLHTTGG-YLVYAATTFKYVFDYHPGDIYWCTADVGWVTGHSYLLY 314
Query: 244 AVAAQGGTNVC----QRTVNAKEIFDNITRHKVTHFGGAPTVLNMIANAPP 290
A G T + + + +H+V APT + +
Sbjct: 315 GPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGD 365
|
| >d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 640 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 140 bits (353), Expect = 3e-38
Identities = 59/294 (20%), Positives = 105/294 (35%), Gaps = 17/294 (5%)
Query: 20 LERSAVVYRDRPSVVYGD------VQYTWKETHQRCVKLASGLAH-LGISPGDVVAALAP 72
++R A+ ++ ++++ T+KE + ++A L + +G+ GD VA P
Sbjct: 65 VDRHALKTPNKKAIIFEGDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMP 124
Query: 73 NVPAMYELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQ--GAFE 130
VP + GA+ + S + + ++K++ + +
Sbjct: 125 MVPEAIITLLAISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKR 184
Query: 131 ILSKTSAKLPLLV--LVPECGEPVSTVASSSGNLEYESLLAIGKLREVRRPKDECDPIAL 188
I+ + P + LV S + +L++ + K P D DP+ L
Sbjct: 185 IVDDALRETPGVRHVLVYRKTNNPSVAFHAPRDLDWATEKKKYKTYYPCTPVDSEDPLFL 244
Query: 189 NYTSGTTSSPKGVICSHRGAYLNSLA-AALFNEMGLMPTYLWCVPMFHCNGWCLTWAVAA 247
YTSG+T +PKGV S G L +L + + + G
Sbjct: 245 LYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDTHQEDVFFTAGDIGWITGHTYVVYGPL 304
Query: 248 QGGTNVC-----QRTVNAKEIFDNITRHKVTHFGGAPTVLNMIANAPPVFENRF 296
G N +D I HKVT F APT L ++ A +
Sbjct: 305 LYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSYIENH 358
|
| >d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]} Length = 534 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Long chain fatty acid-CoA ligase TT0168 species: Thermus thermophilus [TaxId: 274]
Score = 138 bits (348), Expect = 8e-38
Identities = 85/292 (29%), Positives = 122/292 (41%), Gaps = 22/292 (7%)
Query: 13 PLTPISFLERSAVVYRDRPSVVYGD----VQYTWKETHQRCVKLASGLAHLGISPGDVVA 68
L FLER+A ++ + V + T+ E +QR +L GL LG+ GD VA
Sbjct: 10 ELNLWDFLERAAALFGRKEVVSRLHTGEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVA 69
Query: 69 ALAPNVPAMYELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGA 128
L N E +F VP GAVL T N R ++ +L H+E K++ D LLP+ +
Sbjct: 70 TLGFNHFRHLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAI 129
Query: 129 FEILSKTSAKLPLLVLVPECGEPVSTVASSSGNLEYESLLAIGKLREVRRPKDECDPIAL 188
L + + PE Y + E +
Sbjct: 130 RGELKTVQHFVVMDEKAPEG---------------YLAYEEALGEEADPVRVPERAACGM 174
Query: 189 NYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPTYLWC--VPMFHCNGWCLTWAVA 246
YT+GTT PKGV+ SHR L+SLAA+L + L + VPMFH N WCL +A
Sbjct: 175 AYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNAWCLPYAAT 234
Query: 247 AQGGTNVC-QRTVNAKEIFDNITRHKVTHFGGAPTVLNMIANAPPVFENRFR 297
G V ++ + + VT G PTV +A+ +R +
Sbjct: 235 LVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTGHRLK 286
|
| >d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]} Length = 541 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Luciferase species: Firefly (Photinus pyralis) [TaxId: 7054]
Score = 128 bits (322), Expect = 3e-34
Identities = 50/304 (16%), Positives = 98/304 (32%), Gaps = 17/304 (5%)
Query: 9 ANYVPLTPIS---FLERSAVVYRDRPSVV-----YGDVQYTWKETHQRCVKLASGLAHLG 60
A + PL + L ++ Y P + + +V T+ E + V+LA + G
Sbjct: 9 APFYPLEDGTAGEQLHKAMKRYALVPGTIAFTDAHIEVNITYAEYFEMSVRLAEAMKRYG 68
Query: 61 ISPGDVVAALAPNVPAMYELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQ 120
++ + + N + G G + N ++ + + S+ ++FV +
Sbjct: 69 LNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKK 128
Query: 121 LLPIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVASSSGNLEYESLLAIGKLREVRRPK 180
L + L ++ + S + + V
Sbjct: 129 GLQKILNVQKKLPIIQKI-----IIMDSKTDYQGFQSMYTFVTSHLPPGFNEYDFVPESF 183
Query: 181 DECDPIA-LNYTSGTTSSPKGVICSHRGAYLN---SLAAALFNEMGLMPTYLWCVPMFHC 236
D IA + +SG+T PKGV HR A + + N++ L VP H
Sbjct: 184 DRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFHHG 243
Query: 237 NGWCLTWAVAAQGGTNVCQRTVNAKEIFDNITRHKVTHFGGAPTVLNMIANAPPVFENRF 296
G T G V + ++ +K+ PT+ + A + + +
Sbjct: 244 FGMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYDL 303
Query: 297 RGRW 300
Sbjct: 304 SNLH 307
|
| >d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]} Length = 536 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Dihydroxybenzoate-AMP ligase DhbE species: Bacillus subtilis [TaxId: 1423]
Score = 122 bits (306), Expect = 5e-32
Identities = 57/284 (20%), Positives = 99/284 (34%), Gaps = 14/284 (4%)
Query: 19 FLERSAVVYRDRPSVVYGDVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMY 78
L A Y DR ++ G+ ++++E R +LA+G LGI D V PN+ +
Sbjct: 30 LLRDRAAKYGDRIAITCGNTHWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFF 89
Query: 79 ELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAK 138
E+ F + GA+ H S+ ++ +EA + + + + +K
Sbjct: 90 EVIFALFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRS--LARQVQSK 147
Query: 139 LPLLVLVPECGEPVSTVASSSGNLEYESLLAIGKLREVRRPKDECDPIALNYTSGTTSSP 198
LP L + GE + + E L + D L + G+T
Sbjct: 148 LPTLKNIIVAGEAEEFLPLEDLHTEPVKLPEV----------KSSDVAFLQLSGGSTGLS 197
Query: 199 KGVICSHRGAYLNSLAAALFNEMGLMPTYLWCVPMFHCNGWCLTW--AVAAQGGTNVCQR 256
K + +H + + + YL +PM H V GG V
Sbjct: 198 KLIPRTHDDYIYSLKRSVEVCWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVVLSP 257
Query: 257 TVNAKEIFDNITRHKVTHFGGAPTVLNMIANAPPVFENRFRGRW 300
+ + + F I R KVT P + + +A +
Sbjct: 258 SPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRDDLSSLQ 301
|
| >d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]} Length = 514 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Phenylalanine activating domain of gramicidin synthetase 1 species: Bacillus brevis [TaxId: 1393]
Score = 117 bits (294), Expect = 2e-30
Identities = 37/282 (13%), Positives = 81/282 (28%), Gaps = 29/282 (10%)
Query: 19 FLERSAVVYRDRPSVVYGDVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMY 78
E + ++V + Q T+ E + + +LA GI +V + ++
Sbjct: 28 LFEEQVSKRPNNVAIVCENEQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLF 87
Query: 79 ELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAK 138
V AG ++ + + +L S+A+++ L+ +
Sbjct: 88 IGILAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHNI---------- 137
Query: 139 LPLLVLVPECGEPVSTVASSSGNLEYESLLAIGKLREVRRPKDECDPIALNYTSGTTSSP 198
+ + E + I + + P D + YTSGTT +P
Sbjct: 138 ----------------QFNGQVEIFEEDTIKIREGTNLHVPSKSTDLAYVIYTSGTTGNP 181
Query: 199 KGVICSHRGAYLNSLAAALFNEMGLMPTYLWCVPMFHCNGWCLTWAVAAQGGTNVCQRTV 258
KG + H+G + + + + G +
Sbjct: 182 KGTMLEHKGISNLKVFFENSLNVTEKDRIGQFASISFDASVWEMFMALLTGASLYIILKD 241
Query: 259 NAK---EIFDNITRHKVTHFGGAPTVLNMIANAPPVFENRFR 297
+ I + ++T PT + + +
Sbjct: 242 TINDFVKFEQYINQKEITVITLPPTYVVHLDPERILSIQTLI 283
|
| >d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]} Length = 503 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: 4-chlorobenzoyl CoA ligase species: Alcaligenes sp. [TaxId: 512]
Score = 113 bits (283), Expect = 5e-29
Identities = 55/281 (19%), Positives = 92/281 (32%), Gaps = 25/281 (8%)
Query: 15 TPISFLERSAVVYRDRPSVVYGD--VQYTWKETHQRCVKLASGLAHLGISPGDVVAALAP 72
T L R+A D ++ ++ T E R +A+ L G+ P VA +AP
Sbjct: 3 TVNEMLRRAATRAPDHCALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAP 62
Query: 73 NVPAMYELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEIL 132
N + + GAV LN R SA ++ L++ E +
Sbjct: 63 NSADVVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIA-------------- 108
Query: 133 SKTSAKLPLLVLVPECGEPVSTVASSSGNLEYESLLAIGKLREVRRPKDECDPIALNYTS 192
+ + + G + + E + + +R + P + YTS
Sbjct: 109 ----VGRQVADAIFQSGSGARIIFLGDLVRDGEPYSYGPPIEDPQR--EPAQPAFIFYTS 162
Query: 193 GTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPTYLWCVPMFHCNGWCLTWAVAAQG--- 249
GTT PK I R A L + + + M + + A
Sbjct: 163 GTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALD 222
Query: 250 GTNVCQRTVNAKEIFDNITRHKVTHFGGAPTVLNMIANAPP 290
GT V + + + +VT PT L+ +A A
Sbjct: 223 GTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAA 263
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 301 | |||
| d1pg4a_ | 643 | Acetyl-CoA synthetase {Salmonella enterica [TaxId: | 100.0 | |
| d1ry2a_ | 640 | Acetyl-CoA synthetase {Baker's yeast (Saccharomyce | 100.0 | |
| d1mdba_ | 536 | Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtil | 100.0 | |
| d1v25a_ | 534 | Long chain fatty acid-CoA ligase TT0168 {Thermus t | 100.0 | |
| d1lcia_ | 541 | Luciferase {Firefly (Photinus pyralis) [TaxId: 705 | 100.0 | |
| d1amua_ | 514 | Phenylalanine activating domain of gramicidin synt | 100.0 | |
| d3cw9a1 | 503 | 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId | 100.0 | |
| d1lcia_ | 541 | Luciferase {Firefly (Photinus pyralis) [TaxId: 705 | 93.78 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 92.47 | |
| d1amua_ | 514 | Phenylalanine activating domain of gramicidin synt | 91.7 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 90.08 | |
| d1pg4a_ | 643 | Acetyl-CoA synthetase {Salmonella enterica [TaxId: | 90.0 | |
| d1cdoa2 | 175 | Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI | 89.24 | |
| d1v25a_ | 534 | Long chain fatty acid-CoA ligase TT0168 {Thermus t | 89.1 | |
| d3cw9a1 | 503 | 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId | 88.03 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 87.69 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 87.18 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 87.07 | |
| d1ry2a_ | 640 | Acetyl-CoA synthetase {Baker's yeast (Saccharomyce | 86.57 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 86.56 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 85.72 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 85.48 | |
| d1mdba_ | 536 | Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtil | 85.02 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 83.98 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 83.13 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 81.13 | |
| d2ayia1 | 406 | Aminopeptidase T {Thermus thermophilus [TaxId: 274 | 80.67 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 80.67 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 80.37 |
| >d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Salmonella enterica [TaxId: 28901]
Probab=100.00 E-value=2e-41 Score=312.35 Aligned_cols=283 Identities=18% Similarity=0.260 Sum_probs=221.0
Q ss_pred CCHH-HHHHHHhhhcCCccEEEECC------eeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHhhh
Q 046637 14 LTPI-SFLERSAVVYRDRPSVVYGD------VQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPM 86 (301)
Q Consensus 14 ~~~~-~~l~~~~~~~~~~~al~~~~------~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~ 86 (301)
.|+. .+++++++.+||++|+++.+ +++||+||.+++.++|+.|+++|+++||+|+++++|++++++++|||++
T Consensus 71 ~N~~~n~ldrh~~~~~d~~Ali~~~~~~~~~~~~TY~eL~~~v~~~A~~L~~~Gv~~Gd~V~i~~~n~~e~iv~~lA~~~ 150 (643)
T d1pg4a_ 71 LNLAANCLDRHLQENGDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACAR 150 (643)
T ss_dssp ECHHHHHTGGGHHHHTTSEEEEEECSSTTCEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhCCCCEEEEEEecCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEecccchHHHHHHHHHHH
Confidence 3444 46778888999999999642 6899999999999999999999999999999999999999999999999
Q ss_pred ccceeeecCCCCCHHHHHHHHHhcCceEEEEcCCchh------hHHHHHHHhcc-ccCCCCceEEccCCCCCCcccccCC
Q 046637 87 AGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLP------IAQGAFEILSK-TSAKLPLLVLVPECGEPVSTVASSS 159 (301)
Q Consensus 87 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~------~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~ 159 (301)
+|++++|+++.++.+++.+++++++++++|+++.... ........+.. ....+..++++....... .....
T Consensus 151 ~Gav~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~--~~~~~ 228 (643)
T d1pg4a_ 151 IGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDI--DWQEG 228 (643)
T ss_dssp HTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESEEEETTEEEESHHHHHHHHTSTTCCSCCEEEEECSSCCCC--CCCBT
T ss_pred hCeEEEecCCCCCHHHHHHHHHhcCCCEEEEcchhhhhccccchhhhHHHHHhccccccceEEEEeccCCccc--ccccc
Confidence 9999999999999999999999999999999865321 11111111111 111456677766543211 01111
Q ss_pred CCccHHHHHhhccccccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHH-HHHHhhCCCCCEEEEeccchhhhh
Q 046637 160 GNLEYESLLAIGKLREVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLA-AALFNEMGLMPTYLWCVPMFHCNG 238 (301)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~-~~~~~~~~~~~~~l~~~p~~h~~g 238 (301)
....+.+...............++++++|+|||||||.||||++||.+++.+... ....+++.++|++++..|++|++|
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~dd~a~IlyTSGTTG~PKgV~~sh~~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g 308 (643)
T d1pg4a_ 229 RDLWWRDLIEKASPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVTG 308 (643)
T ss_dssp TEEEHHHHHTTSCSCCCCCCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHH
T ss_pred cchhhhhhhcccCcccCCCCCCCCCeEEEEeCCCcccCCCEEEEccHHHHHHHHHHHHHhhCCCCCCEEEEeCChHHHHH
Confidence 2233444444444443444567899999999999999999999999997665444 455678899999999999999999
Q ss_pred hHH-HHHHHHhCCeEEeeCC----CCHHHHHHHHHhcCcceecCChHHHHHHHcCCCC--ccccccC
Q 046637 239 WCL-TWAVAAQGGTNVCQRT----VNAKEIFDNITRHKVTHFGGAPTVLNMIANAPPV--FENRFRG 298 (301)
Q Consensus 239 ~~~-~~~~l~~g~~~v~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~--~~~~l~~ 298 (301)
+.. ++.+|+.|+++++.++ +++..+++.++++++|+++++|++++.|+++... ...++++
T Consensus 309 ~~~~l~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~~dl~s 375 (643)
T d1pg4a_ 309 HSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSS 375 (643)
T ss_dssp HHHTTHHHHHTTCEEEEECSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGGGTTTCCCTT
T ss_pred HHHHHHHHHHhCCEEEEecCCCCCCCHHHHHHHHHHHCCcEEEehHHHHHHHHhCcchhccccCCCc
Confidence 775 6788999999999763 4899999999999999999999999999987543 4455554
|
| >d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.9e-40 Score=306.44 Aligned_cols=284 Identities=19% Similarity=0.260 Sum_probs=218.7
Q ss_pred CH-HHHHHHHhhhcCCccEEEECC------eeeeHHHHHHHHHHHHHHHH-hcCCCCCCEEEEEcCCCHHHHHHHHHhhh
Q 046637 15 TP-ISFLERSAVVYRDRPSVVYGD------VQYTWKETHQRCVKLASGLA-HLGISPGDVVAALAPNVPAMYELHFGVPM 86 (301)
Q Consensus 15 ~~-~~~l~~~~~~~~~~~al~~~~------~~~Ty~el~~~~~~la~~L~-~~gv~~g~~V~i~~~n~~~~~~~~lA~~~ 86 (301)
|+ .++|+++++++||++|+++.+ +++||+||.++++++|.+|+ ++|+++||+|+++++|++++++++|||++
T Consensus 59 N~~~n~ldr~a~~~pd~~Ali~~~~~~g~~~~~Ty~eL~~~v~~~A~~L~~~~Gv~~Gd~V~i~~~n~~e~~~~~lA~~~ 138 (640)
T d1ry2a_ 59 NACYNCVDRHALKTPNKKAIIFEGDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLLAISR 138 (640)
T ss_dssp CHHHHHTHHHHTTCTTSEEEEEECSSTTCCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhhCCCCEEEEEEecCCCCeeEEeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCHHHHHHHHHhcc
Confidence 44 578899999999999999732 68999999999999999997 67999999999999999999999999999
Q ss_pred ccceeeecCCCCCHHHHHHHHHhcCceEEEEcCCchhh-----HHHHHHHhccccCCCCceEEccCCCCCCcccccCCCC
Q 046637 87 AGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPI-----AQGAFEILSKTSAKLPLLVLVPECGEPVSTVASSSGN 161 (301)
Q Consensus 87 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~-----~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 161 (301)
+|++++|+++.++.+++.++++++++++++++...... ..............+.............. .......
T Consensus 139 ~Gav~vpi~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 217 (640)
T d1ry2a_ 139 IGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVLVYRKTNNPSV-AFHAPRD 217 (640)
T ss_dssp TTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHTTSCTTCCEEEEECSSCCSSC-CCCSSSE
T ss_pred CceEeecCCCCCCHHHHHHHHHhhhccccccchhhhhccchhhhHHHHHhhhhhhcccceeeeecccccccc-ccccccc
Confidence 99999999999999999999999999999998653311 12222221111113444444433322111 1111112
Q ss_pred ccHHHHHhhccccccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHH-HHhhCCCCCEEEEeccchhhhhhH
Q 046637 162 LEYESLLAIGKLREVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAA-LFNEMGLMPTYLWCVPMFHCNGWC 240 (301)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~-~~~~~~~~~~~l~~~p~~h~~g~~ 240 (301)
..+.................++++++|+|||||||.||||+++|.+++.+..... ..+.+.++|++++..|++|++|+.
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~h~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~ 297 (640)
T d1ry2a_ 218 LDWATEKKKYKTYYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDTHQEDVFFTAGDIGWITGHT 297 (640)
T ss_dssp EEHHHHHTTSCSCCCCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHHSCCCSSCEEEECSCTTSHHHHH
T ss_pred ccccccccccccccccCCcccccCCEEEECCCCCCCCcceeeccccHHHHHHHHHHhhcCCCcccceeeccchhhhhhHH
Confidence 2333333333333444456678999999999999999999999999877655443 456788999999999999999976
Q ss_pred H-HHHHHHhCCeEEeeCC----CCHHHHHHHHHhcCcceecCChHHHHHHHcCCCC--ccccccCC
Q 046637 241 L-TWAVAAQGGTNVCQRT----VNAKEIFDNITRHKVTHFGGAPTVLNMIANAPPV--FENRFRGR 299 (301)
Q Consensus 241 ~-~~~~l~~g~~~v~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~--~~~~l~~~ 299 (301)
. ++.++..|+++++.+. +++..+++.|+++++|++.++|++++.|.+.+.. .+.+|++.
T Consensus 298 ~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~sL 363 (640)
T d1ry2a_ 298 YVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSYIENHSLKSL 363 (640)
T ss_dssp HTTHHHHHHTSEEEEECSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCTTSSSSCCCTTC
T ss_pred HHHHHHHHhCCEEEEecCCCCCCCHHHHHHHHHHhCccEEEcChHHHHHHHhccccccccCCCCce
Confidence 4 7788999999998864 3889999999999999999999999999887543 45566553
|
| >d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Dihydroxybenzoate-AMP ligase DhbE species: Bacillus subtilis [TaxId: 1423]
Probab=100.00 E-value=1.1e-40 Score=301.48 Aligned_cols=277 Identities=20% Similarity=0.232 Sum_probs=223.3
Q ss_pred CCCCCCHHHHHHHHhhhcCCccEEEECCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHhhhccc
Q 046637 10 NYVPLTPISFLERSAVVYRDRPSVVYGDVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAGA 89 (301)
Q Consensus 10 ~~~~~~~~~~l~~~~~~~~~~~al~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~ 89 (301)
.|.+.|+.++|++.++++||++|+++.++++||+||.++++++|++|.+.|+++||+|+++++|++++++++|||+++|+
T Consensus 21 ~~~~~tl~~~l~~~a~~~pd~~Al~~~~~~~Ty~el~~~v~~~A~~L~~~Gv~~gd~V~i~~~n~~~~~v~~lA~~~~G~ 100 (536)
T d1mdba_ 21 CWAGETFGDLLRDRAAKYGDRIAITCGNTHWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFALFRLGA 100 (536)
T ss_dssp SSCSCCHHHHHHHHHHHHTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEECCCSSHHHHHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHHHCCCCeEEEECCEeEcHHHHHHHHHHHHHHHHHcCcCCcCEEEEEeCCCHHHHHHHHHHHHhCc
Confidence 36778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeecCCCCCHHHHHHHHHhcCceEEEEcCCchhhHHHHHH-HhccccCCCCceEEccCCCCCCcccccCCCCccHHHHH
Q 046637 90 VLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFE-ILSKTSAKLPLLVLVPECGEPVSTVASSSGNLEYESLL 168 (301)
Q Consensus 90 ~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (301)
+++|++|..+.+++.++++.++++++++++........... ......+.+...+....... ...+++.
T Consensus 101 i~vpl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~- 169 (536)
T d1mdba_ 101 LPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKNIIVAGEAEE----------FLPLEDL- 169 (536)
T ss_dssp EEEECCTTCCHHHHHHHHHHTTCSEEEEESEETTEEHHHHHHHHHHHCTTCCCEEEESCCTT----------SEEGGGC-
T ss_pred EEEecCCCCCHHHHHHHHHhhccceEeccchhhhhhhhhhhhhhhhccccccceeeeecccc----------ccchhhc-
Confidence 99999999999999999999999999998765433222111 11111112333332222111 1111111
Q ss_pred hhccccccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhhCCCCCEEEEeccchhhhhhHH--HHHHH
Q 046637 169 AIGKLREVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPTYLWCVPMFHCNGWCL--TWAVA 246 (301)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~h~~g~~~--~~~~l 246 (301)
...........++++++|+|||||||.||||++||.++..++......+.+.+++++++..|++|.+|+.. .+..+
T Consensus 170 --~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~l~~~~~~~~~ 247 (536)
T d1mdba_ 170 --HTEPVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDHSTVYLAALPMAHNYPLSSPGVLGVL 247 (536)
T ss_dssp --CCCCCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECSCTTSHHHHHSSHHHHHH
T ss_pred --ccCCcCCCccCccchHHhhhcccccccceecccccccccccccccccccccccccccccccccccccceeeccccccc
Confidence 11112223467889999999999999999999999999999999889999999999999999999999763 34445
Q ss_pred HhCCeEEeeCCCCHHHHHHHHHhcCcceecCChHHHHHHHcCCCCccccccCC
Q 046637 247 AQGGTNVCQRTVNAKEIFDNITRHKVTHFGGAPTVLNMIANAPPVFENRFRGR 299 (301)
Q Consensus 247 ~~g~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~~ 299 (301)
..|++++..+.+++..+++.+++++++.+..+|..+..+.........++++.
T Consensus 248 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (536)
T d1mdba_ 248 YAGGRVVLSPSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRDDLSSL 300 (536)
T ss_dssp HTTCEEEECSSSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHCCCCCTTC
T ss_pred cccccccccCCCCHHHHHHHHhhhccccccccchhhhhhhhhccccccccCcc
Confidence 55777777788999999999999999999999999999887766655555443
|
| >d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Long chain fatty acid-CoA ligase TT0168 species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=3.7e-40 Score=298.25 Aligned_cols=273 Identities=31% Similarity=0.406 Sum_probs=225.9
Q ss_pred CCCCHHHHHHHHhhhcCCccEEEECC----eeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHhhhc
Q 046637 12 VPLTPISFLERSAVVYRDRPSVVYGD----VQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMA 87 (301)
Q Consensus 12 ~~~~~~~~l~~~~~~~~~~~al~~~~----~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~ 87 (301)
.+.|++++|+++++++||++|+++.+ +++||+||.+++.++|+.|.+.|+++||+|+++++|++++++++|||+++
T Consensus 9 ~~~~l~~~l~~~a~~~pd~~av~~~~~g~~~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~ 88 (534)
T d1v25a_ 9 EELNLWDFLERAAALFGRKEVVSRLHTGEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFAVPGM 88 (534)
T ss_dssp CCCCTHHHHHHHHHHSTTCEEEEECTTSCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHcCCCeEEEEecCCceEEEcHHHHHHHHHHHHHHHHHCCcCCCCEEEEEeCCCHHHHHHHHHHHHh
Confidence 46789999999999999999999843 57999999999999999999999999999999999999999999999999
Q ss_pred cceeeecCCCCCHHHHHHHHHhcCceEEEEcCCchhhHHHHHHHhccccCCCCceEEccCCCCCCcccccCCCCccHHHH
Q 046637 88 GAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVASSSGNLEYESL 167 (301)
Q Consensus 88 G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (301)
|++++|++|.++.+++.++++.+++++++++..............+ .+..++......... .....
T Consensus 89 G~v~vpl~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~--------~~~~~-- 154 (534)
T d1v25a_ 89 GAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRGELK----TVQHFVVMDEKAPEG--------YLAYE-- 154 (534)
T ss_dssp TCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHGGGCS----SCCEEEESSSCCCTT--------CEEHH--
T ss_pred CcEEEecCCCCCHHHHHHHHHhhccccccccchhhhhHHHHhhccc----ccceeEEeecccccc--------ccccc--
Confidence 9999999999999999999999999999999888877776665554 556666554432210 01111
Q ss_pred HhhccccccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHH--HHHHhhCCCCCEEEEeccchhhhhhHHHHHH
Q 046637 168 LAIGKLREVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLA--AALFNEMGLMPTYLWCVPMFHCNGWCLTWAV 245 (301)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~--~~~~~~~~~~~~~l~~~p~~h~~g~~~~~~~ 245 (301)
.............++++++|+|||||||.||||+++|.+++.+... ....+.....+++++.+|++|.+++...+..
T Consensus 155 -~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~~~~~ 233 (534)
T d1v25a_ 155 -EALGEEADPVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNAWCLPYAA 233 (534)
T ss_dssp -HHCCSCCCCCCCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTTTTCCCTTCEEEECSCTTSHHHHTHHHHH
T ss_pred -ccccccccccccccCCcEEEEEecCCCCCccccccccchhhhhhhhhhhhcccccccccccccccchhhhcccccccee
Confidence 1111222334466788999999999999999999999999865544 3334456788999999999999999988888
Q ss_pred HHhCCeEEeeC-CCCHHHHHHHHHhcCcceecCChHHHHHHHcCCCCccccccCC
Q 046637 246 AAQGGTNVCQR-TVNAKEIFDNITRHKVTHFGGAPTVLNMIANAPPVFENRFRGR 299 (301)
Q Consensus 246 l~~g~~~v~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~~ 299 (301)
+..|+++++.. .+++..+...+.++++|++.++|.++..+++.......++++.
T Consensus 234 ~~~g~~~v~~~~~~~~~~~~~~~~~~~vt~~~~~p~~~~~~~~~~~~~~~~~~~l 288 (534)
T d1v25a_ 234 TLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTGHRLKTL 288 (534)
T ss_dssp HHHTCEEEECTTCCSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHHTCCCSSC
T ss_pred eeecceeeeccccccccccchhhhhccccccccCchhhhhhhhhhccccccccce
Confidence 88888887764 6899999999999999999999999999998766666665543
|
| >d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Luciferase species: Firefly (Photinus pyralis) [TaxId: 7054]
Probab=100.00 E-value=8e-39 Score=289.63 Aligned_cols=280 Identities=15% Similarity=0.123 Sum_probs=230.1
Q ss_pred CCCCCCCHHHHHHHHhhhc---CCccEEEECC--eeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHH
Q 046637 9 ANYVPLTPISFLERSAVVY---RDRPSVVYGD--VQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFG 83 (301)
Q Consensus 9 ~~~~~~~~~~~l~~~~~~~---~~~~al~~~~--~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA 83 (301)
.|.++.++.++|.+.+++| |+.+|+++.+ +++||+||.+++.++|..|+++|+++||+|+++++|++++++++||
T Consensus 12 ~p~~~~t~~~~l~~~~~~~~~~P~~~a~~d~~~~~~lTy~el~~~~~~lA~~L~~~Gi~~Gd~Vai~~~ns~e~~v~~lA 91 (541)
T d1lcia_ 12 YPLEDGTAGEQLHKAMKRYALVPGTIAFTDAHIEVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLG 91 (541)
T ss_dssp SCCCSSCHHHHHHHHHHHHHTSTTCEEEEETTTCCEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCSSTHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHhhCCCCCeEEEEeCCCCeEeeHHHHHHHHHHHHHHHHHcCcCCCCEEEEEeCCCHHHHHHHHH
Confidence 3444578999999999998 7777888754 6899999999999999999999999999999999999999999999
Q ss_pred hhhccceeeecCCCCCHHHHHHHHHhcCceEEEEcCCchhhHHHHHHHhccccCCCCceEEccCCCCCCcccccCCCCcc
Q 046637 84 VPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVASSSGNLE 163 (301)
Q Consensus 84 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 163 (301)
|+++|++++|+++.++.+++.++++.++++++|++++..+.+.+....++ ..+.+++++..... .+...
T Consensus 92 ~~~~G~i~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~-------~~~~~ 160 (541)
T d1lcia_ 92 ALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQKKLP----IIQKIIIMDSKTDY-------QGFQS 160 (541)
T ss_dssp HHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGHHHHHHHHHHCT----TCCEEEETTCSSCB-------TTBEE
T ss_pred HHHhCeEEEecCCCCCHHHHHHHHHhccceEEeeeccccccchhcccccc----ccceeeeecCCccc-------cccch
Confidence 99999999999999999999999999999999999988888888877776 66777777654321 22233
Q ss_pred HHHHHhhcccc-------ccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHh---hCCCCCEEEEeccc
Q 046637 164 YESLLAIGKLR-------EVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFN---EMGLMPTYLWCVPM 233 (301)
Q Consensus 164 ~~~~~~~~~~~-------~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~---~~~~~~~~l~~~p~ 233 (301)
+.+........ .......++++++|+|||||||.||||++||.+++.......... ...+++++++.+|+
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 240 (541)
T d1lcia_ 161 MYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPF 240 (541)
T ss_dssp HHHHHHHHSCTTCCTTTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCT
T ss_pred hhhhhhhhccccccccccCccccCCCCceEEEEeeccccccccccccccchhhhhhhhhhhhcccccccccccccccccc
Confidence 43333222111 122335567899999999999999999999999987666544333 46788999999999
Q ss_pred hhhhhhHHHHHHHHhCCeEEeeCCCCHHHHHHHHHhcCcceecCChHHHHHHHcCCCCccccccCC
Q 046637 234 FHCNGWCLTWAVAAQGGTNVCQRTVNAKEIFDNITRHKVTHFGGAPTVLNMIANAPPVFENRFRGR 299 (301)
Q Consensus 234 ~h~~g~~~~~~~l~~g~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~~ 299 (301)
+|.+++...+..+..|+..+.....++......+.++++|.+.++|.++..+++.......++++.
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~p~~~~~~~~~~~~~~~~~~~l 306 (541)
T d1lcia_ 241 HHGFGMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYDLSNL 306 (541)
T ss_dssp TSHHHHHHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCSEEECCHHHHHHHHHCSCGGGSCCTTC
T ss_pred cccccccccccccccccccccccccccchhHHHHhhhhccccccCccccccccccccccccccccc
Confidence 999999888888999999999888999999999999999999999999999999888777776654
|
| >d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Phenylalanine activating domain of gramicidin synthetase 1 species: Bacillus brevis [TaxId: 1393]
Probab=100.00 E-value=7.5e-38 Score=281.67 Aligned_cols=255 Identities=16% Similarity=0.140 Sum_probs=210.3
Q ss_pred ccccCCCCC-CCCHHHHHHHHhhhcCCccEEEECCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHH
Q 046637 4 MIRCSANYV-PLTPISFLERSAVVYRDRPSVVYGDVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHF 82 (301)
Q Consensus 4 ~~~~~~~~~-~~~~~~~l~~~~~~~~~~~al~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~l 82 (301)
+|+...+++ +.++.++|+++++++||++|++++++++||+||.++++++|..|.++|+++||+|+++++|++++++++|
T Consensus 12 ~~~~~~~~~~~~tl~~l~~~~a~~~Pd~~Al~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~Vai~~~n~~~~v~~~l 91 (514)
T d1amua_ 12 VNNTKAEYPRDKTIHQLFEEQVSKRPNNVAIVCENEQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLFIGIL 91 (514)
T ss_dssp TTCCCCCCCTTCCHHHHHHHHHHHCTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHH
T ss_pred hcCCCCCCCCCCcHHHHHHHHHHhCCCCeEEEECCeeEcHHHHHHHHHHHHHHHHHcCcCCcCEEEEEeCCCHHHHHHHH
Confidence 566667766 6899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhccceeeecCCCCCHHHHHHHHHhcCceEEEEcCCchhhHHHHHHHhccccCCCCceEEccCCCCCCcccccCCCCc
Q 046637 83 GVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVASSSGNL 162 (301)
Q Consensus 83 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 162 (301)
||+++|++++|+++.++.+++.++++.++++++|++......+.... .............
T Consensus 92 a~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~--------~~~~~~~~~~~~~------------ 151 (514)
T d1amua_ 92 AVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHNIQ--------FNGQVEIFEEDTI------------ 151 (514)
T ss_dssp HHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHTTSC--------CCSEEEECCCSTT------------
T ss_pred HHHHhCcEEEEeCCCCCHHHHHHHHhccCCcEEEEehhhhhhhhhhc--------ccccccccccccc------------
Confidence 99999999999999999999999999999999999977654432211 1111111111100
Q ss_pred cHHHHHhhccccccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhhCCCCCEEEEeccchhhhhhHHH
Q 046637 163 EYESLLAIGKLREVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPTYLWCVPMFHCNGWCLT 242 (301)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~h~~g~~~~ 242 (301)
.............++++++|+|||||||.||+|.+||.++..+.......+....++++++..|++|.+|+...
T Consensus 152 ------~~~~~~~~~~p~~~~d~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~ 225 (514)
T d1amua_ 152 ------KIREGTNLHVPSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSLNVTEKDRIGQFASISFDASVWEM 225 (514)
T ss_dssp ------TTSCCSCCCCCCCTTSEEEEEEEC-----CEEEEEESHHHHHHHHHHHHTSCCCTTCEEEECSCTTSTHHHHHH
T ss_pred ------cccccccCCCCCCcccceEEEEccCCCCCcccccccccccccccccccccccccccccccceeccccccccccc
Confidence 01111122234567889999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHhCCeEEeeCC---CCHHHHHHHHHhcCcceecCChHHHHH
Q 046637 243 WAVAAQGGTNVCQRT---VNAKEIFDNITRHKVTHFGGAPTVLNM 284 (301)
Q Consensus 243 ~~~l~~g~~~v~~~~---~~~~~~~~~i~~~~~t~~~~~P~~~~~ 284 (301)
+.++..|+++++.+. .+...+++.+..+.++.+..+|.....
T Consensus 226 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (514)
T d1amua_ 226 FMALLTGASLYIILKDTINDFVKFEQYINQKEITVITLPPTYVVH 270 (514)
T ss_dssp HHHHTTTCEEEECCHHHHTCHHHHHHHHHHTTCCEEEECHHHHTT
T ss_pred cccccccccccccccccccchhhhhhhhhhhhcccccceeeeccc
Confidence 889999999998763 567888999999999999999987654
|
| >d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: 4-chlorobenzoyl CoA ligase species: Alcaligenes sp. [TaxId: 512]
Probab=100.00 E-value=9.2e-36 Score=266.41 Aligned_cols=255 Identities=23% Similarity=0.231 Sum_probs=208.2
Q ss_pred CCHHHHHHHHhhhcCCccEEEEC--CeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHhhhcccee
Q 046637 14 LTPISFLERSAVVYRDRPSVVYG--DVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAGAVL 91 (301)
Q Consensus 14 ~~~~~~l~~~~~~~~~~~al~~~--~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~ 91 (301)
.++.++|+++++++||++|+++. ++++||+||.+++.++|.+|++.|+++||+|+++++|++++++++|||+++|+++
T Consensus 2 ~ti~~~l~~~a~~~pd~~al~~~~~~~~~Ty~el~~~~~~~a~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~v~ 81 (503)
T d3cw9a1 2 QTVNEMLRRAATRAPDHCALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVP 81 (503)
T ss_dssp CCHHHHHHHHHHHSTTSEEEEEGGGTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHHTCEE
T ss_pred CCHHHHHHHHHHhCCCCeEEEECCCCcEEeHHHHHHHHHHHHHHHHHcCcCCCCEEEEEeCCCHHHHHHHHHHHHhCcEE
Confidence 58999999999999999999985 4699999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCCCHHHHHHHHHhcCceEEEEcCCchhhHHHHHHHhccccCCCCceEEccCCCCCCcccccCCCCccHHHHHhhc
Q 046637 92 CTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVASSSGNLEYESLLAIG 171 (301)
Q Consensus 92 v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (301)
+|++|.++.+++.+++++++++++|++..... ........ ....++.+++..... .. ...
T Consensus 82 vpi~~~~~~~~i~~~l~~~~~~~~i~~~~~~~-~~~~~~~~-----~~~~~i~~~~~~~~~---------~~-----~~~ 141 (503)
T d3cw9a1 82 ALLNPRLKSAELAELIKRGEMTAAVIAVGRQV-ADAIFQSG-----SGARIIFLGDLVRDG---------EP-----YSY 141 (503)
T ss_dssp EEECTTSCHHHHHHHHHHTTCSEEEESSCHHH-HHHHHHTT-----CCCEEEEHHHHEETT---------EE-----CCC
T ss_pred EEeCCCCCHHHHHHHHHhcCCcEEEeecchHH-HHHHhhhc-----cccccccchhhhhhh---------cc-----ccc
Confidence 99999999999999999999999999875432 22222211 334454443221000 00 001
Q ss_pred cccccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhh--CCCCCEEEEeccchhhhhhHH-HHHHHHh
Q 046637 172 KLREVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNE--MGLMPTYLWCVPMFHCNGWCL-TWAVAAQ 248 (301)
Q Consensus 172 ~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~--~~~~~~~l~~~p~~h~~g~~~-~~~~l~~ 248 (301)
..........++++++|+|||||||.||+|+++|.++..+.......+. ....++++..+|++|.++... .+.+...
T Consensus 142 ~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 221 (503)
T d3cw9a1 142 GPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALAL 221 (503)
T ss_dssp SCCCCCCCCCTTSEEEEEEECCSSSSCEEEEEEGGGHHHHHHHHHHTSCCCSSTTCEEEECSCTTSHHHHHTTHHHHHHT
T ss_pred CCccccccchhhhhhhhcccccccccccccccccchhhhhhhhccccccccccccccccccCcccccccccccccccccc
Confidence 1111223466789999999999999999999999999988887766554 456689999999988888664 6777888
Q ss_pred CCeEEeeCCCCHHHHHHHHHhcCcceecCChHHHHHHHcC
Q 046637 249 GGTNVCQRTVNAKEIFDNITRHKVTHFGGAPTVLNMIANA 288 (301)
Q Consensus 249 g~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~ 288 (301)
++.+++.+.+++..+...+.+++++++..+|+.+..++..
T Consensus 222 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 261 (503)
T d3cw9a1 222 DGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAA 261 (503)
T ss_dssp TCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHH
T ss_pred ccccccccccChHHhhhhhhhceeeccccccccccccccc
Confidence 8999999999999999999999999999999999988653
|
| >d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Luciferase species: Firefly (Photinus pyralis) [TaxId: 7054]
Probab=93.78 E-value=0.16 Score=43.08 Aligned_cols=97 Identities=12% Similarity=0.013 Sum_probs=72.2
Q ss_pred eEEEeccCCCCCCCeeeechHHHHHHHHHHHHHh---hCCCCCEEEEeccchhhhhhHHHHHHHHhCCeEEeeC-CCCHH
Q 046637 186 IALNYTSGTTSSPKGVICSHRGAYLNSLAAALFN---EMGLMPTYLWCVPMFHCNGWCLTWAVAAQGGTNVCQR-TVNAK 261 (301)
Q Consensus 186 ~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~---~~~~~~~~l~~~p~~h~~g~~~~~~~l~~g~~~v~~~-~~~~~ 261 (301)
+.+.++.+.++ ..+|+..+...+..+...+ +++++|++...++-.- --....++++..|+..+.+. ..+.+
T Consensus 35 ~~~a~~d~~~~----~~lTy~el~~~~~~lA~~L~~~Gi~~Gd~Vai~~~ns~-e~~v~~lA~~~~G~i~vpl~~~~~~~ 109 (541)
T d1lcia_ 35 GTIAFTDAHIE----VNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSL-QFFMPVLGALFIGVAVAPANDIYNER 109 (541)
T ss_dssp TCEEEEETTTC----CEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCS-STHHHHHHHHHHTCEEEECCTTCCHH
T ss_pred CeEEEEeCCCC----eEeeHHHHHHHHHHHHHHHHHcCcCCCCEEEEEeCCCH-HHHHHHHHHHHhCeEEEecCCCCCHH
Confidence 34445554444 5689999988777655544 6889999888877542 22345688899999888775 67889
Q ss_pred HHHHHHHhcCcceecCChHHHHHHHc
Q 046637 262 EIFDNITRHKVTHFGGAPTVLNMIAN 287 (301)
Q Consensus 262 ~~~~~i~~~~~t~~~~~P~~~~~l~~ 287 (301)
++...++..+++.+++....+..+.+
T Consensus 110 ~l~~~l~~~~~~~vi~~~~~~~~~~~ 135 (541)
T d1lcia_ 110 ELLNSMNISQPTVVFVSKKGLQKILN 135 (541)
T ss_dssp HHHHHHHHHCCSEEEECGGGHHHHHH
T ss_pred HHHHHHHhccceEEeeeccccccchh
Confidence 99999999999999999887766543
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=92.47 E-value=0.72 Score=32.42 Aligned_cols=61 Identities=13% Similarity=0.113 Sum_probs=41.1
Q ss_pred HHhcCCCCCCEEEEEcCCCHHHHHHHHHhhhccceeeecCCCCCHHHHHHHHHhcCceEEEEcCC
Q 046637 56 LAHLGISPGDVVAALAPNVPAMYELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQ 120 (301)
Q Consensus 56 L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~ 120 (301)
+.+.++++||+|+|++. ++--..+...+...|+.++.++++ ++-.++.++.+++..+..+.
T Consensus 19 ~~~~~~~~g~~vlV~G~-G~vG~~~~~~ak~~Ga~vi~v~~~---~~r~~~a~~~ga~~~~~~~~ 79 (170)
T d1e3ja2 19 CRRAGVQLGTTVLVIGA-GPIGLVSVLAAKAYGAFVVCTARS---PRRLEVAKNCGADVTLVVDP 79 (170)
T ss_dssp HHHHTCCTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESC---HHHHHHHHHTTCSEEEECCT
T ss_pred HHHhCCCCCCEEEEEcc-cccchhhHhhHhhhcccccccchH---HHHHHHHHHcCCcEEEeccc
Confidence 55669999999999975 554444444556778887777544 44456666777776665443
|
| >d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Phenylalanine activating domain of gramicidin synthetase 1 species: Bacillus brevis [TaxId: 1393]
Probab=91.70 E-value=1.1 Score=37.41 Aligned_cols=100 Identities=11% Similarity=-0.032 Sum_probs=76.3
Q ss_pred CCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHH---hhCCCCCEEEEeccchhhhhhHHHHHHHHhCCeEEeeC
Q 046637 180 KDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALF---NEMGLMPTYLWCVPMFHCNGWCLTWAVAAQGGTNVCQR 256 (301)
Q Consensus 180 ~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~---~~~~~~~~~l~~~p~~h~~g~~~~~~~l~~g~~~v~~~ 256 (301)
..||.+|++.- +-.+|+..|...+...... .+++++|++....|-...+ +...++++..|+..+.+.
T Consensus 35 ~~Pd~~Al~~~---------~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~Vai~~~n~~~~-v~~~la~~~~G~v~v~l~ 104 (514)
T d1amua_ 35 KRPNNVAIVCE---------NEQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDL-FIGILAVLKAGGAYVPID 104 (514)
T ss_dssp HCTTSEEEEET---------TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHH-HHHHHHHHHTTCEEEECC
T ss_pred hCCCCeEEEEC---------CeeEcHHHHHHHHHHHHHHHHHcCcCCcCEEEEEeCCCHHH-HHHHHHHHHhCcEEEEeC
Confidence 45677777631 2479999998877766544 4788999998888865433 335688899999988775
Q ss_pred -CCCHHHHHHHHHhcCcceecCChHHHHHHHcCC
Q 046637 257 -TVNAKEIFDNITRHKVTHFGGAPTVLNMIANAP 289 (301)
Q Consensus 257 -~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~ 289 (301)
..+++.+...++..+++.+++.+.....+....
T Consensus 105 ~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~ 138 (514)
T d1amua_ 105 IEYPKERIQYILDDSQARMLLTQKHLVHLIHNIQ 138 (514)
T ss_dssp TTSCHHHHHHHHHHHTCSEEEECGGGHHHHTTSC
T ss_pred CCCCHHHHHHHHhccCCcEEEEehhhhhhhhhhc
Confidence 678899999999999999999988877766543
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.08 E-value=1.3 Score=31.08 Aligned_cols=63 Identities=14% Similarity=0.099 Sum_probs=42.0
Q ss_pred HHHHhcCCCCCCEEEEEcCCCHHHHHHHHHhhhccc-eeeecCCCCCHHHHHHHHHhcCceEEEEcCC
Q 046637 54 SGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAGA-VLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQ 120 (301)
Q Consensus 54 ~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~-~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~ 120 (301)
+.+.+.++++||.|+|++.-..-...+.++ ...|+ .++.++++ ++-..+.++.+++.++...+
T Consensus 17 ~a~~~~~~~~gd~VlI~G~G~iG~~~~~~a-~~~G~~~Vi~~d~~---~~rl~~a~~~Ga~~~~~~~~ 80 (171)
T d1pl8a2 17 HACRRGGVTLGHKVLVCGAGPIGMVTLLVA-KAMGAAQVVVTDLS---ATRLSKAKEIGADLVLQISK 80 (171)
T ss_dssp HHHHHHTCCTTCEEEEECCSHHHHHHHHHH-HHTTCSEEEEEESC---HHHHHHHHHTTCSEEEECSS
T ss_pred HHHHHhCCCCCCEEEEECCCccHHHHHHHH-HHcCCceEEeccCC---HHHHHHHHHhCCcccccccc
Confidence 345566999999999998754555555555 45677 46666544 44445667888887776543
|
| >d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Salmonella enterica [TaxId: 28901]
Probab=90.00 E-value=1.4 Score=38.33 Aligned_cols=95 Identities=13% Similarity=-0.071 Sum_probs=69.8
Q ss_pred CCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHH---hhCCCCCEEEEeccchhhhhhHHHHHHHHhCCeEEee-C
Q 046637 181 DECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALF---NEMGLMPTYLWCVPMFHCNGWCLTWAVAAQGGTNVCQ-R 256 (301)
Q Consensus 181 ~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~---~~~~~~~~~l~~~p~~h~~g~~~~~~~l~~g~~~v~~-~ 256 (301)
.+|.+|+|.. +..+|. ...+|+..|...+...... .+++++|++...+|...-+ ....++++..|+..+.+ +
T Consensus 85 ~~d~~Ali~~-~~~~~~--~~~~TY~eL~~~v~~~A~~L~~~Gv~~Gd~V~i~~~n~~e~-iv~~lA~~~~Gav~v~l~~ 160 (643)
T d1pg4a_ 85 NGDRTAIIWE-GDDTSQ--SKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEA-AVAMLACARIGAVHSVIFG 160 (643)
T ss_dssp HTTSEEEEEE-CSSTTC--EEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHH-HHHHHHHHHHTCEEEECCT
T ss_pred CCCCEEEEEE-ecCCCC--ceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEecccchHH-HHHHHHHHHhCeEEEecCC
Confidence 4566777654 322232 4578999998877666554 4788999999999864432 34568889999988877 4
Q ss_pred CCCHHHHHHHHHhcCcceecCCh
Q 046637 257 TVNAKEIFDNITRHKVTHFGGAP 279 (301)
Q Consensus 257 ~~~~~~~~~~i~~~~~t~~~~~P 279 (301)
.+.++.+...+++.++..+++.+
T Consensus 161 ~~~~~~l~~~l~~~~~~~li~~~ 183 (643)
T d1pg4a_ 161 GFSPEAVAGCIIDSSSRLVITAD 183 (643)
T ss_dssp TSCHHHHHHHHHHHTCSEEEEES
T ss_pred CCCHHHHHHHHHhcCCCEEEEcc
Confidence 78899999999999999988643
|
| >d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Probab=89.24 E-value=0.94 Score=31.92 Aligned_cols=61 Identities=7% Similarity=-0.032 Sum_probs=44.7
Q ss_pred HhcCCCCCCEEEEEcCCCHHHHHHHHHhhhccceeeecCCCCCHHHHHHHHHhcCceEEEEcCC
Q 046637 57 AHLGISPGDVVAALAPNVPAMYELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQ 120 (301)
Q Consensus 57 ~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~ 120 (301)
...++++||+|+|.+....-...+.++....+..++.++.. ++-.+..+..+++.+|-..+
T Consensus 22 ~~a~~k~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~---~~rl~~a~~~GAd~~in~~~ 82 (175)
T d1cdoa2 22 NTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLN---PDKFEKAKVFGATDFVNPND 82 (175)
T ss_dssp TTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSC---GGGHHHHHHTTCCEEECGGG
T ss_pred HhhCCCCCCEEEEEecCCccchHHHHHHHHhhchheeecch---HHHHHHHHHcCCcEEEcCCC
Confidence 34589999999999987777777777777666677777555 33445677888888776443
|
| >d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Long chain fatty acid-CoA ligase TT0168 species: Thermus thermophilus [TaxId: 274]
Probab=89.10 E-value=2.1 Score=35.79 Aligned_cols=101 Identities=11% Similarity=-0.045 Sum_probs=74.2
Q ss_pred CCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHh---hCCCCCEEEEeccchhhhhhHHHHHHHHhCCeEEeeC
Q 046637 180 KDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFN---EMGLMPTYLWCVPMFHCNGWCLTWAVAAQGGTNVCQR 256 (301)
Q Consensus 180 ~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~---~~~~~~~~l~~~p~~h~~g~~~~~~~l~~g~~~v~~~ 256 (301)
..+|.++++...+| +...+|+..+...+......+ +++++|++...++.... -....++++..|+..+.++
T Consensus 23 ~~pd~~av~~~~~g-----~~~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~n~~e-~~~~~lA~~~~G~v~vpl~ 96 (534)
T d1v25a_ 23 LFGRKEVVSRLHTG-----EVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFR-HLEAYFAVPGMGAVLHTAN 96 (534)
T ss_dssp HSTTCEEEEECTTS-----CEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHH-HHHHHHHHHHTTCEEEECC
T ss_pred HcCCCeEEEEecCC-----ceEEEcHHHHHHHHHHHHHHHHHCCcCCCCEEEEEeCCCHH-HHHHHHHHHHhCcEEEecC
Confidence 45567776655543 234689999988776655544 67899999888885432 2335788899999988875
Q ss_pred -CCCHHHHHHHHHhcCcceecCChHHHHHHH
Q 046637 257 -TVNAKEIFDNITRHKVTHFGGAPTVLNMIA 286 (301)
Q Consensus 257 -~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~ 286 (301)
...++++...++..++..++..+.....+.
T Consensus 97 ~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~ 127 (534)
T d1v25a_ 97 PRLSPKEIAYILNHAEDKVLLFDPNLLPLVE 127 (534)
T ss_dssp TTSCHHHHHHHHHHHTCSEEEECGGGHHHHH
T ss_pred CCCCHHHHHHHHHhhccccccccchhhhhHH
Confidence 678899999999999999988776666554
|
| >d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: 4-chlorobenzoyl CoA ligase species: Alcaligenes sp. [TaxId: 512]
Probab=88.03 E-value=1.8 Score=35.65 Aligned_cols=92 Identities=13% Similarity=-0.017 Sum_probs=66.4
Q ss_pred CCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHH---hhCCCCCEEEEeccchhhhhhHHHHHHHHhCCeEEeeC
Q 046637 180 KDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALF---NEMGLMPTYLWCVPMFHCNGWCLTWAVAAQGGTNVCQR 256 (301)
Q Consensus 180 ~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~---~~~~~~~~~l~~~p~~h~~g~~~~~~~l~~g~~~v~~~ 256 (301)
..|+.+|++.-.+| ..+|+..+...+...... .++.++|++...++-.- --+.+.++++..|+..+.++
T Consensus 14 ~~pd~~al~~~~~~-------~~~Ty~el~~~~~~~a~~L~~~Gv~~gd~V~i~~~n~~-~~~~~~lA~~~~G~v~vpi~ 85 (503)
T d3cw9a1 14 RAPDHCALAVPARG-------LRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSA-DVVIAILALHRLGAVPALLN 85 (503)
T ss_dssp HSTTSEEEEEGGGT-------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCH-HHHHHHHHHHHHTCEEEEEC
T ss_pred hCCCCeEEEECCCC-------cEEeHHHHHHHHHHHHHHHHHcCcCCCCEEEEEeCCCH-HHHHHHHHHHHhCcEEEEeC
Confidence 34566676554433 358999988766665544 46788999888877533 22335788899999988885
Q ss_pred -CCCHHHHHHHHHhcCcceecCCh
Q 046637 257 -TVNAKEIFDNITRHKVTHFGGAP 279 (301)
Q Consensus 257 -~~~~~~~~~~i~~~~~t~~~~~P 279 (301)
...++.+...+++.++..++...
T Consensus 86 ~~~~~~~i~~~l~~~~~~~~i~~~ 109 (503)
T d3cw9a1 86 PRLKSAELAELIKRGEMTAAVIAV 109 (503)
T ss_dssp TTSCHHHHHHHHHHTTCSEEEESS
T ss_pred CCCCHHHHHHHHHhcCCcEEEeec
Confidence 67889999999999999887544
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=87.69 E-value=1.1 Score=32.45 Aligned_cols=60 Identities=12% Similarity=0.076 Sum_probs=40.6
Q ss_pred HHhcCCCCCCEEEEEcCCCHHHHHHHHHhhhccceeeecCCCCCHHHHHHHHHhcCceEEEEc
Q 046637 56 LAHLGISPGDVVAALAPNVPAMYELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVD 118 (301)
Q Consensus 56 L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~ 118 (301)
+...++++||+|+|++.-..-..++.+|....+..++..++. ++-.++.++.+++.++..
T Consensus 18 ~~~a~v~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~---~~rl~~a~~~Ga~~~~~~ 77 (195)
T d1kola2 18 AVTAGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLN---PARLAHAKAQGFEIADLS 77 (195)
T ss_dssp HHHTTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESC---HHHHHHHHHTTCEEEETT
T ss_pred HHHhCCCCCCEEEEECcCHHHHHHHHHHHhhcccceeeeccc---chhhHhhhhccccEEEeC
Confidence 555699999999999875455566666655444466666554 444466677888877654
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=87.18 E-value=1.6 Score=30.27 Aligned_cols=62 Identities=18% Similarity=0.096 Sum_probs=41.4
Q ss_pred HHHHhcCCCCCCEEEEEcCCCHHHHHHHHHhhhccceeeecCCCCCHHHHHHHHHhcCceEEEEcC
Q 046637 54 SGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDY 119 (301)
Q Consensus 54 ~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~ 119 (301)
+.+++.++++||+|+|.+.-..-.. +...+...|+.++.++.+ ++. .+..++.+++.++...
T Consensus 18 ~al~~~~~~~g~~VlV~GaG~vG~~-~~~~ak~~G~~Vi~~~~~--~~~-~~~a~~~Ga~~~i~~~ 79 (166)
T d1llua2 18 KGLKQTNARPGQWVAISGIGGLGHV-AVQYARAMGLHVAAIDID--DAK-LELARKLGASLTVNAR 79 (166)
T ss_dssp HHHHHHTCCTTCEEEEECCSHHHHH-HHHHHHHTTCEEEEEESC--HHH-HHHHHHTTCSEEEETT
T ss_pred HHHHHhCCCCCCEEEEeeccccHHH-HHHHHHHcCCccceecch--hhH-HHhhhccCcccccccc
Confidence 4466678999999999987444444 444555668877777543 333 4556778888776543
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=87.07 E-value=1.8 Score=30.48 Aligned_cols=61 Identities=8% Similarity=-0.008 Sum_probs=43.8
Q ss_pred HhcCCCCCCEEEEEcCCCHHHHHHHHHhhhccceeeecCCCCCHHHHHHHHHhcCceEEEEcCC
Q 046637 57 AHLGISPGDVVAALAPNVPAMYELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQ 120 (301)
Q Consensus 57 ~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~ 120 (301)
...++++||.|+|++.-+.-...+.++....+..++.++.+... ..+.++.+++.++...+
T Consensus 22 ~~~~vk~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k---~~~a~~~Ga~~~i~~~~ 82 (176)
T d2jhfa2 22 KVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDK---FAKAKEVGATECVNPQD 82 (176)
T ss_dssp TTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGG---HHHHHHTTCSEEECGGG
T ss_pred HhhCCCCCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHH---HHHHHHhCCeeEEecCC
Confidence 34579999999999998777787888877766778877666333 44556667776665543
|
| >d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.57 E-value=2.8 Score=36.08 Aligned_cols=96 Identities=10% Similarity=0.007 Sum_probs=69.1
Q ss_pred CCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHH----hhCCCCCEEEEeccchhhhhhHHHHHHHHhCCeEEee
Q 046637 180 KDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALF----NEMGLMPTYLWCVPMFHCNGWCLTWAVAAQGGTNVCQ 255 (301)
Q Consensus 180 ~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~----~~~~~~~~~l~~~p~~h~~g~~~~~~~l~~g~~~v~~ 255 (301)
..+|.+|+|.. +..+| ....+|+..|...+...... ++++++|++...+|..- --....++++..|+..+.+
T Consensus 71 ~~pd~~Ali~~-~~~~g--~~~~~Ty~eL~~~v~~~A~~L~~~~Gv~~Gd~V~i~~~n~~-e~~~~~lA~~~~Gav~vpi 146 (640)
T d1ry2a_ 71 KTPNKKAIIFE-GDEPG--QGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVP-EAIITLLAISRIGAIHSVV 146 (640)
T ss_dssp TCTTSEEEEEE-CSSTT--CCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSH-HHHHHHHHHHHTTCEEEEC
T ss_pred hCCCCEEEEEE-ecCCC--CeeEEeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCH-HHHHHHHHhccCceEeecC
Confidence 45778887743 33333 34678999998776665443 46789999988887533 2234568888899998877
Q ss_pred C-CCCHHHHHHHHHhcCcceecCCh
Q 046637 256 R-TVNAKEIFDNITRHKVTHFGGAP 279 (301)
Q Consensus 256 ~-~~~~~~~~~~i~~~~~t~~~~~P 279 (301)
. .+.++.+...++..++..+++.+
T Consensus 147 ~~~~~~~~l~~~~~~~~~~~~~~~~ 171 (640)
T d1ry2a_ 147 FAGFSSNSLRDRINDGDSKVVITTD 171 (640)
T ss_dssp CTTSCHHHHHHHHHHHTCSEEEEES
T ss_pred CCCCCHHHHHHHHHhhhccccccch
Confidence 4 67899999999999988887654
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.56 E-value=3.8 Score=28.56 Aligned_cols=60 Identities=12% Similarity=0.036 Sum_probs=40.7
Q ss_pred HHhc-CCCCCCEEEEEcCCCHHHHHHHHHhhhccceeeecCCCCCHHHHHHHHHhcCceEEEEc
Q 046637 56 LAHL-GISPGDVVAALAPNVPAMYELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVD 118 (301)
Q Consensus 56 L~~~-gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~ 118 (301)
|.+. ++++|++|+|.+..+.--..++-.+...|+.++.+.. +++. .+.++..+++.++-.
T Consensus 20 l~~~~~~~~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~--~~~~-~~~~~~~Ga~~vi~~ 80 (174)
T d1yb5a2 20 LIHSACVKAGESVLVHGASGGVGLAACQIARAYGLKILGTAG--TEEG-QKIVLQNGAHEVFNH 80 (174)
T ss_dssp HHTTSCCCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEES--SHHH-HHHHHHTTCSEEEET
T ss_pred HHHHhCCCCCCEEEEEeccccccccccccccccCcccccccc--cccc-cccccccCccccccc
Confidence 4444 7999999999998666555454455677887776653 3443 456677888877744
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=85.72 E-value=1.1 Score=31.49 Aligned_cols=62 Identities=15% Similarity=0.050 Sum_probs=40.6
Q ss_pred HHHHhcCCCCCCEEEEEcCCCHHHHHHHHHhhhccceeeecCCCCCHHHHHHHHHhcCceEEEEcC
Q 046637 54 SGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDY 119 (301)
Q Consensus 54 ~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~ 119 (301)
+.|++.++++||+|+|++.-..-...+.+ +...|+-++.++.+-. . ....++.+++.++...
T Consensus 18 ~al~~~~~~~g~~vlI~GaG~vG~~a~q~-ak~~G~~vi~~~~~~~--k-~~~a~~lGa~~~i~~~ 79 (168)
T d1piwa2 18 SPLVRNGCGPGKKVGIVGLGGIGSMGTLI-SKAMGAETYVISRSSR--K-REDAMKMGADHYIATL 79 (168)
T ss_dssp HHHHHTTCSTTCEEEEECCSHHHHHHHHH-HHHHTCEEEEEESSST--T-HHHHHHHTCSEEEEGG
T ss_pred HHHHHhCcCCCCEEEEECCCCcchhHHHH-hhhccccccccccchh--H-HHHhhccCCcEEeecc
Confidence 45667799999999999884444554444 4467887777765432 2 2345667777666543
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=85.48 E-value=1.9 Score=30.19 Aligned_cols=61 Identities=8% Similarity=-0.017 Sum_probs=40.0
Q ss_pred hcCCCCCCEEEEEcCCCHHHHHHHHHhhhccceeeecCCCCCHHHHHHHHHhcCceEEEEcCCc
Q 046637 58 HLGISPGDVVAALAPNVPAMYELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQL 121 (301)
Q Consensus 58 ~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~ 121 (301)
..++++||+|+|.+....-...+.+|.......++..+.. ++-.++.++.+++.++-..+.
T Consensus 23 ~~~~~~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~---~~k~~~ak~lGa~~~i~~~~~ 83 (176)
T d2fzwa2 23 TAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDIN---KDKFARAKEFGATECINPQDF 83 (176)
T ss_dssp TTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSC---GGGHHHHHHHTCSEEECGGGC
T ss_pred hhCCCCCCEEEEecchhHHHHHHHHHHHHhcCceEEEccc---HHHHHHHHHhCCcEEEeCCch
Confidence 3479999999999987666666555555433455555443 333456777888877765443
|
| >d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Dihydroxybenzoate-AMP ligase DhbE species: Bacillus subtilis [TaxId: 1423]
Probab=85.02 E-value=4 Score=33.82 Aligned_cols=88 Identities=11% Similarity=-0.085 Sum_probs=64.5
Q ss_pred CCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHH---hhCCCCCEEEEeccchhhhhhHHHHHHHHhCCeEEeeC-
Q 046637 181 DECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALF---NEMGLMPTYLWCVPMFHCNGWCLTWAVAAQGGTNVCQR- 256 (301)
Q Consensus 181 ~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~---~~~~~~~~~l~~~p~~h~~g~~~~~~~l~~g~~~v~~~- 256 (301)
.+|.+|++- |. -.+|+..|...+...... .++.++|++....|..- --....++++..|+..+.+.
T Consensus 38 ~pd~~Al~~---~~------~~~Ty~el~~~v~~~A~~L~~~Gv~~gd~V~i~~~n~~-~~~v~~lA~~~~G~i~vpl~~ 107 (536)
T d1mdba_ 38 YGDRIAITC---GN------THWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIK-EFFEVIFALFRLGALPVFALP 107 (536)
T ss_dssp HTTSEEEEE---TT------EEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEECCCSSH-HHHHHHHHHHHHTCEEEECCT
T ss_pred CCCCeEEEE---CC------EeEcHHHHHHHHHHHHHHHHHcCcCCcCEEEEEeCCCH-HHHHHHHHHHHhCcEEEecCC
Confidence 356666653 21 368999998877666544 46889999888887542 22445788899999988875
Q ss_pred CCCHHHHHHHHHhcCcceecCC
Q 046637 257 TVNAKEIFDNITRHKVTHFGGA 278 (301)
Q Consensus 257 ~~~~~~~~~~i~~~~~t~~~~~ 278 (301)
...+..+...++..++..+++.
T Consensus 108 ~~~~~~~~~~l~~~~~~~~~~~ 129 (536)
T d1mdba_ 108 SHRSSEITYFCEFAEAAAYIIP 129 (536)
T ss_dssp TCCHHHHHHHHHHTTCSEEEEE
T ss_pred CCCHHHHHHHHHhhccceEecc
Confidence 6788999999999999887653
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=83.98 E-value=1.3 Score=31.18 Aligned_cols=61 Identities=15% Similarity=-0.033 Sum_probs=41.1
Q ss_pred HHHhcCCCCCCEEEEEcCCCHHHHHHHHHhhhccceeeecCCCCCHHHHHHHHHhcCceEEEEc
Q 046637 55 GLAHLGISPGDVVAALAPNVPAMYELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVD 118 (301)
Q Consensus 55 ~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~ 118 (301)
.|.+.++++||+|+|.+..+.--..+.-.+...|+.++.+..+ + +-...++..+++.++-.
T Consensus 19 al~~~~~~~g~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~--~-~~~~~~~~lGa~~~i~~ 79 (171)
T d1iz0a2 19 ALKRAQARPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASR--P-EKLALPLALGAEEAATY 79 (171)
T ss_dssp HHHHTTCCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESS--G-GGSHHHHHTTCSEEEEG
T ss_pred HHHHhCCCCCCEEEEEeccccchhhhhhhhccccccccccccc--c-cccccccccccceeeeh
Confidence 3566689999999999987776555555556778876666433 2 22345567788777754
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=83.13 E-value=2.8 Score=28.89 Aligned_cols=62 Identities=15% Similarity=0.115 Sum_probs=42.0
Q ss_pred HHHhcCCCCCCEEEEEcCCCHHHHHHHHHhhhccceeeecCCCCCHHHHHHHHHhcCceEEEEcCC
Q 046637 55 GLAHLGISPGDVVAALAPNVPAMYELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQ 120 (301)
Q Consensus 55 ~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~ 120 (301)
.|...++++|++|+|.+.-+.-..+ ...+...|+.++.... +++. ...++..+++.++...+
T Consensus 19 al~~~~~~~g~~vlv~G~G~iG~~a-~~~a~~~g~~v~~~~~--~~~r-~~~~k~~Ga~~~~~~~~ 80 (168)
T d1rjwa2 19 ALKVTGAKPGEWVAIYGIGGLGHVA-VQYAKAMGLNVVAVDI--GDEK-LELAKELGADLVVNPLK 80 (168)
T ss_dssp HHHHHTCCTTCEEEEECCSTTHHHH-HHHHHHTTCEEEEECS--CHHH-HHHHHHTTCSEEECTTT
T ss_pred HHHHhCCCCCCEEEEeecccchhhh-hHHHhcCCCeEeccCC--CHHH-hhhhhhcCcceeccccc
Confidence 4666799999999999886665554 4444467776555533 3444 45667788888877654
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=81.13 E-value=4.2 Score=28.10 Aligned_cols=62 Identities=5% Similarity=-0.002 Sum_probs=40.6
Q ss_pred HHHhcCCCCCCEEEEEcCCCHHHHHHHHHhhhccc-eeeecCCCCCHHHHHHHHHhcCceEEEEcC
Q 046637 55 GLAHLGISPGDVVAALAPNVPAMYELHFGVPMAGA-VLCTLNTRHDSAMVSVLLRHSEAKIIFVDY 119 (301)
Q Consensus 55 ~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~-~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~ 119 (301)
.+.+.++++||.|+|++..+.--..+...+...|+ .++..+++ ++-..++++.+++.++-..
T Consensus 19 al~~~~~~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~---~~~~~~~~~~Ga~~~i~~~ 81 (170)
T d1jvba2 19 AVRKASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVR---EEAVEAAKRAGADYVINAS 81 (170)
T ss_dssp HHHHTTCCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESS---HHHHHHHHHHTCSEEEETT
T ss_pred HHHHhCCCCCCEEEEEeccccceeeeeecccccccccccccccc---hhhHHHHHHcCCceeeccC
Confidence 46677999999999999766654444444444564 55555444 4455666777887766543
|
| >d2ayia1 e.60.1.1 (A:3-408) Aminopeptidase T {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Thermophilic metalloprotease-like superfamily: Thermophilic metalloprotease-like family: Thermophilic metalloprotease (M29) domain: Aminopeptidase T species: Thermus thermophilus [TaxId: 274]
Probab=80.67 E-value=2.3 Score=34.66 Aligned_cols=50 Identities=26% Similarity=0.161 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHhc--CCCCCCEEEEEcCCC-HHH-HHHHHHhhhccceeeec
Q 046637 45 THQRCVKLASGLAHL--GISPGDVVAALAPNV-PAM-YELHFGVPMAGAVLCTL 94 (301)
Q Consensus 45 l~~~~~~la~~L~~~--gv~~g~~V~i~~~n~-~~~-~~~~lA~~~~G~~~v~l 94 (301)
|.++.+++|..|.+. +|++|+.|.|.++-. .++ -.+.=++.+.|+.++.+
T Consensus 2 ~~~~L~k~A~llV~~~l~vqkGe~VlI~a~~~~~~Lvral~e~A~~~GA~pv~v 55 (406)
T d2ayia1 2 FKRNLEKLAELAIRVGLNLEKGQEVIATAPIEAVDFVRLLAEKAYREGASLFTV 55 (406)
T ss_dssp CHHHHHHHHHHHHHTTTCCCTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEE
T ss_pred hHHHHHHHHHHHHHHcccCCCCCEEEEEcccchHHHHHHHHHHHHHcCCCeEEE
Confidence 346788899988876 689999999987663 343 34555678899977644
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=80.67 E-value=7 Score=27.10 Aligned_cols=59 Identities=14% Similarity=0.035 Sum_probs=39.5
Q ss_pred HHhc-CCCCCCEEEEEcCCC-HHHHHHHHHhhhccceeeecCCCCCHHHHHHHHHhcCceEEEEc
Q 046637 56 LAHL-GISPGDVVAALAPNV-PAMYELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVD 118 (301)
Q Consensus 56 L~~~-gv~~g~~V~i~~~n~-~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~ 118 (301)
|.+. .+++||+|+|.+..+ .-..+..+| ...|+.++....+ ++. ...++..+++.+|-.
T Consensus 20 l~~~~~l~~g~~Vlv~ga~g~vG~~~iqla-k~~Ga~Vi~~~~s--~~k-~~~~~~lGa~~vi~~ 80 (179)
T d1qora2 20 LRKTYEIKPDEQFLFHAAAGGVGLIACQWA-KALGAKLIGTVGT--AQK-AQSALKAGAWQVINY 80 (179)
T ss_dssp HHTTSCCCTTCEEEESSTTBHHHHHHHHHH-HHHTCEEEEEESS--HHH-HHHHHHHTCSEEEET
T ss_pred HHHHhCCCCCCEEEEEccccccchHHHHHH-HHhCCeEeecccc--hHH-HHHHHhcCCeEEEEC
Confidence 4454 689999999998888 455555554 5688877766333 333 345566788877743
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=80.37 E-value=2.8 Score=29.07 Aligned_cols=62 Identities=16% Similarity=0.149 Sum_probs=41.6
Q ss_pred HHHHhcCCCCCCEEEEEcCCCHHHHHHHHHhhhccceeeecCCCCCHHHHHHHHHhcCceEEEEcC
Q 046637 54 SGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDY 119 (301)
Q Consensus 54 ~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~ 119 (301)
+.|++.++++||+|+|.+.-..-.+.+.+|- ..|+..+.++.... . ....+..+++.++...
T Consensus 21 ~al~~~~~~~G~~VlI~GaG~vG~~a~qlak-~~Ga~~i~~~~~~~--~-~~~a~~lGad~~i~~~ 82 (168)
T d1uufa2 21 SPLRHWQAGPGKKVGVVGIGGLGHMGIKLAH-AMGAHVVAFTTSEA--K-REAAKALGADEVVNSR 82 (168)
T ss_dssp HHHHHTTCCTTCEEEEECCSHHHHHHHHHHH-HTTCEEEEEESSGG--G-HHHHHHHTCSEEEETT
T ss_pred HHHHHhCCCCCCEEEEeccchHHHHHHHHhh-cccccchhhccchh--H-HHHHhccCCcEEEECc
Confidence 4467779999999999987555556555555 56887776655432 2 2456677887776543
|