Citrus Sinensis ID: 046642

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------
Protein Sequence
MSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEFFDVSDNLLTGPIPRGKQFDTFGKSSFDGNPGLCGGPLSKKCDNSEASPPEEDPHSESVFAFGWKTVVIGYASGTIIGVILGHIFSTRKYEWLAKTFHLQPKANGRRRRVERHRQQM
Secondary Structure (PSIPRED)
ccccccEEEEEEEcccEEEEEcccccccccccHHHHccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEcEEEEEEEEEHHHHHHHHHHHHHHccccccEEEEEEccHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccccccccHHHHHHcccEEEEcccccccccccHHHcccccccEEEcccccccccccHHHccccccEEEEcccccccccccHHHccccccEEEEccccccccccccccccccccEEEcccccccccccccccccccccccccccccccccccccEEEEEEccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHccccc
Coil and Loop (DISEMBL)
MSNKGTELEYEKLSNLITAIIlsnnsfvgeipTSIAnlkglrnldlsnnnlqgriplslsnltaiesmdlssnmlsgnipqqlseltsleffdvsdnlltgpiprgkqfdtfgkssfdgnpglcggplskkcdnseasppeedphsesvfafGWKTVVIGYASGTIIGVILGHIFSTRKYEWLAKTfhlqpkangrrRRVERHRQQM
Flexible Loop (DISEMBL)
MSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEFFDVSDNLLTGPIPRGKQFDTFGKSSFDGNPGLCGGPLSKKCDNSEASPPEEDPHSESVFAFGWKTVVIGYASGTIIGVILGHIFSTRKYEWLAKtfhlqpkangrrrrverhrqqm
Low Complexity Region (SEG)
MSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEFFDVSDNLLTGPIPRGKQFDTFGKSSFDGNPGLCGGPLSKKCDNSEASPPEEDPHSESVFAFGWKTVVIGYASGTIIGVILGHIFSTRKYEWLAKTFHLQPKANGrrrrverhrQQM
Disordered region (IsUnstruct)
*********YEKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAI*******************ELTSLEFFDVSDNLLTGPI*********************************************VFAFGWKTVVIGYASGTIIGVILGHIFSTRKYEWLAKTFHL******************
Disordered Region (DISOPRED)
MSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEFFDVSDNLLTGPIPRGKQFDTFGKSSFDGNPGLCGGP*************************GWKTVVIGYASGTIIGVILGHIFSTRKYEWLAKTFHLQPKANGRRRRVER**QQ*
Disordered Region (DISEMBL)
********EYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEFFDVSDNLLTGPIPRGKQFDTFGKSSFDGNPGLCGGPLSK***************SESVFAFGWKTVVIGYASGTIIGVILGHIFSTRKYEWLAKTFHLQP****************
Disordered Region (DISPRO)
***KGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEFFDVSDNLLTGPIPRGKQFDTFGKSSFDGNPGLCGGPLSKKCD****************FAFGWKTVVIGYASGTIIGVILGHIFSTRKYEWLAKTFHLQPKANGRRRRV*******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEFFDVSDNLLTGPIPRGKQFDTFGKSSFDGNPGLCGGPLSKKCDNSEASPPEEDPHSESVFAFGWKTVVIGYASGTIIGVILGHIFSTRKYEWLAKTFHLQPKANGRRRRVERHRQQM
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	207	2.2.26 [Sep-21-2011]
Q9C9H7	847	Receptor-like protein 12	no	no	0.893	0.218	0.397	4e-32
Q9C7S5	1095	Tyrosine-sulfated glycope	no	no	0.652	0.123	0.485	3e-28
Q9SHI3	729	Receptor-like protein 2 O	no	no	0.739	0.209	0.440	1e-26
Q8LPB4	1021	Phytosulfokine receptor 1	N/A	no	0.748	0.151	0.419	6e-24
Q9M0G7	1013	Leucine-rich repeat recep	no	no	0.777	0.158	0.367	3e-20
Q9FN37	1036	Phytosulfokine receptor 2	no	no	0.603	0.120	0.468	2e-19
O22476	1196	Protein BRASSINOSTEROID I	no	no	0.555	0.096	0.456	7e-19
Q9FIZ3	1252	LRR receptor-like serine/	no	no	0.710	0.117	0.397	3e-18
C0LGF4	591	LRR receptor-like serine/	no	no	0.608	0.213	0.379	5e-18
Q9C9N5	685	Probable inactive leucine	no	no	0.748	0.226	0.343	6e-18

>sp|Q9C9H7|RLP12_ARATH Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2

 Score =  137 bits (346), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 76/191 (39%), Positives = 104/191 (54%), Gaps = 6/191 (3%)

Query: 1   MSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLS 60
           M NKG ++ +E++     AI  S N   G IP S+  LK LR L+LS N     IP  L+
Sbjct: 644 MVNKGVDMSFERIRRDFRAIDFSGNKINGNIPESLGYLKELRVLNLSGNAFTSVIPRFLA 703

Query: 61  NLTAIESMDLSSNMLSGNIPQQLSELTSLEFFDVSDNLLTGPIPRGKQFDTFGKSSFDGN 120
           NLT +E++D+S N LSG IPQ L+ L+ L + + S NLL GP+PRG QF     SSF  N
Sbjct: 704 NLTKLETLDISRNKLSGQIPQDLAALSFLSYMNFSHNLLQGPVPRGTQFQRQKCSSFLDN 763

Query: 121 PGLCGGPLSKKCDNSEASPPE----EDPHSESVFAFGWKTVVIGYASGTIIGVILGHIFS 176
           PGL G  L   C ++ A  P     ED        F W    I Y  G + G+++GH ++
Sbjct: 764 PGLYG--LEDICRDTGALNPTSQLPEDLSEAEENMFNWVAAAIAYGPGVLCGLVIGHFYT 821

Query: 177 TRKYEWLAKTF 187
           +  +EW  + F
Sbjct: 822 SHNHEWFTEKF 832

Involved in the perception of CLV3 and CLV3-like peptides, that act as extracellular signals regulating meristems maintenance.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9C7S5|PSYR1_ARATH Tyrosine-sulfated glycopeptide receptor 1 OS=Arabidopsis thaliana GN=PSYR1 PE=2 SV=1

 Score =  124 bits (312), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 66/136 (48%), Positives = 87/136 (63%)

Query: 3   NKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNL 62
           N  T  +Y +LS+L   I +  N+  G IP  +  LK L  L+L  NN  G IP  LSNL
Sbjct: 569 NVTTNQQYNQLSSLPPTIYIKRNNLTGTIPVEVGQLKVLHILELLGNNFSGSIPDELSNL 628

Query: 63  TAIESMDLSSNMLSGNIPQQLSELTSLEFFDVSDNLLTGPIPRGKQFDTFGKSSFDGNPG 122
           T +E +DLS+N LSG IP  L+ L  L +F+V++N L+GPIP G QFDTF K++F+GNP 
Sbjct: 629 TNLERLDLSNNNLSGRIPWSLTGLHFLSYFNVANNTLSGPIPTGTQFDTFPKANFEGNPL 688

Query: 123 LCGGPLSKKCDNSEAS 138
           LCGG L   CD ++ S
Sbjct: 689 LCGGVLLTSCDPTQHS 704

Tyrosine-sulfated glycopeptide receptor with a serine/threonine-protein kinase activity. Regulates, in response to tyrosine-sulfated glycopeptide binding, a signaling cascade involved in cellular proliferation and plant growth. Not involved in PSK perception.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9SHI3|RLP2_ARATH Receptor-like protein 2 OS=Arabidopsis thaliana GN=RLP2 PE=2 SV=1

 Score =  119 bits (298), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 70/159 (44%), Positives = 92/159 (57%), Gaps = 6/159 (3%)

Query: 3   NKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNL 62
           N  T  +Y KL +    I +  N+  G IP  +  LK L  L+L  NNL G IP  LSNL
Sbjct: 564 NVTTNQQYNKLYSFPPTIYIRRNNLTGSIPVEVGQLKVLHILELLGNNLSGSIPDELSNL 623

Query: 63  TAIESMDLSSNMLSGNIPQQLSELTSLEFFDVSDNLLTGPIPRGKQFDTFGKSSFDGNPG 122
           T +E +DLS+N LSG+IP  L+ L  L +F+V++N L GPIP   QFDTF K++F+GNP 
Sbjct: 624 TNLERLDLSNNNLSGSIPWSLTNLNFLSYFNVANNSLEGPIPSEGQFDTFPKANFEGNPL 683

Query: 123 LCGGPLSKKCDNSEASPPEEDPHSESVFAFGWKTVVIGY 161
           LCGG L   C  + A   +E+      F  G   + IGY
Sbjct: 684 LCGGVLLTSCKPTRA---KENDELNRTFLMG---IAIGY 716

Involved in the perception of CLV3 and CLV3-like peptides, that act as extracellular signals regulating meristems maintenance.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LPB4|PSKR1_DAUCA Phytosulfokine receptor 1 OS=Daucus carota GN=PSKR PE=1 SV=1

 Score =  110 bits (275), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 70/167 (41%), Positives = 94/167 (56%), Gaps = 12/167 (7%)

Query: 8   LEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIES 67
           L+Y + S+    I LS NS  G I     +L+ L  L+L NNNL G IP +LS +T++E 
Sbjct: 526 LQYNQPSSFPPMIDLSYNSLNGSIWPEFGDLRQLHVLNLKNNNLSGNIPANLSGMTSLEV 585

Query: 68  MDLSSNMLSGNIPQQLSELTSLEFFDVSDNLLTGPIPRGKQFDTFGKSSFDGNPGLCGGP 127
           +DLS N LSGNIP  L +L+ L  F V+ N L+GPIP G QF TF  SSF+GN GLCG  
Sbjct: 586 LDLSHNNLSGNIPPSLVKLSFLSTFSVAYNKLSGPIPTGVQFQTFPNSSFEGNQGLCG-- 643

Query: 128 LSKKCDNSEASP---PEEDPHSESVFAFGWKTVVIGYASGTIIGVIL 171
                    ASP    ++ PH  +V +      ++  A GT +G + 
Sbjct: 644 -------EHASPCHITDQSPHGSAVKSKKNIRKIVAVAVGTGLGTVF 683

Phytosulfokine receptor with a serine/threonine-protein kinase activity. Regulates, in response to phytosulfokine binding, a signaling cascade involved in plant cell differentiation, organogenesis and somatic embryogenesis.

Daucus carota (taxid: 4039)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9M0G7|PXL2_ARATH Leucine-rich repeat receptor-like protein kinase PXL2 OS=Arabidopsis thaliana GN=PXL2 PE=2 SV=1

 Score = 98.2 bits (243), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 61/166 (36%), Positives = 90/166 (54%), Gaps = 5/166 (3%)

Query: 22  LSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQ 81
           LS+N+  G IP+SIA+ + L +L+L NNNL G IP  ++ ++A+  +DLS+N L+G +P+
Sbjct: 507 LSSNTLTGTIPSSIASCEKLVSLNLRNNNLTGEIPRQITTMSALAVLDLSNNSLTGVLPE 566

Query: 82  QLSELTSLEFFDVSDNLLTGPIPRGKQFDTFGKSSFDGNPGLCGGPLSKKCDNSEASPPE 141
            +    +LE  +VS N LTGP+P      T       GN GLCGG L        A+   
Sbjct: 567 SIGTSPALELLNVSYNKLTGPVPINGFLKTINPDDLRGNSGLCGGVLPPCSKFQRATSSH 626

Query: 142 EDPHSESVFAFGWKTVVIGYASGTIIGVILGHIFSTRKYEWLAKTF 187
              H + + A GW   +IG AS   +G IL  +  T   +W +  F
Sbjct: 627 SSLHGKRIVA-GW---LIGIASVLALG-ILTIVTRTLYKKWYSNGF 667

Involved in the regulation of procambium maintenance and polarity during vascular-tissue development.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FN37|PSKR2_ARATH Phytosulfokine receptor 2 OS=Arabidopsis thaliana GN=PSKR2 PE=2 SV=1

 Score = 95.9 bits (237), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 59/126 (46%), Positives = 71/126 (56%), Gaps = 1/126 (0%)

Query: 8   LEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIES 67
           L Y ++S    +I L+NN   G I   I  LK L  LDLS NN  G IP S+S L  +E 
Sbjct: 529 LPYNQVSRFPPSIYLNNNRLNGTILPEIGRLKELHMLDLSRNNFTGTIPDSISGLDNLEV 588

Query: 68  MDLSSNMLSGNIPQQLSELTSLEFFDVSDNLLTGPIPRGKQFDTFGKSSFDGNPGLCGGP 127
           +DLS N L G+IP     LT L  F V+ N LTG IP G QF +F  SSF+GN GLC   
Sbjct: 589 LDLSYNHLYGSIPLSFQSLTFLSRFSVAYNRLTGAIPSGGQFYSFPHSSFEGNLGLCRA- 647

Query: 128 LSKKCD 133
           +   CD
Sbjct: 648 IDSPCD 653

Phytosulfokine receptor with a serine/threonine-protein kinase activity.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O22476|BRI1_ARATH Protein BRASSINOSTEROID INSENSITIVE 1 OS=Arabidopsis thaliana GN=BRI1 PE=1 SV=1

 Score = 94.0 bits (232), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 53/116 (45%), Positives = 71/116 (61%), Gaps = 1/116 (0%)

Query: 22  LSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQ 81
           +S N   G IP  I ++  L  L+L +N++ G IP  + +L  +  +DLSSN L G IPQ
Sbjct: 661 MSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQ 720

Query: 82  QLSELTSLEFFDVSDNLLTGPIPRGKQFDTFGKSSFDGNPGLCGGPLSKKCDNSEA 137
            +S LT L   D+S+N L+GPIP   QF+TF  + F  NPGLCG PL  +CD S A
Sbjct: 721 AMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPL-PRCDPSNA 775

Receptor with a dual specificity kinase activity acting on both serine/threonine- and tyrosine-containing substrates. Regulates, in response to brassinosteroid binding, a signaling cascade involved in plant development, including expression of light- and stress-regulated genes, promotion of cell elongation, normal leaf and chloroplast senescence, and flowering. Binds brassinolide, and less effectively castasterone, but not 2,3,22,23-O-tetramethylbrassinolide or ecdysone. May be involved in a feedback regulation of brassinosteroid biosynthesis. Phosphorylates BRI1-associated receptor kinase 1 (BAK1), Transthyretin-Like protein (TTL) and SERK1 on 'Ser-299' and 'Thr-462' in vitro. May have a guanylyl cyclase activity.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FIZ3|GSO2_ARATH LRR receptor-like serine/threonine-protein kinase GSO2 OS=Arabidopsis thaliana GN=GSO2 PE=2 SV=2

 Score = 91.7 bits (226), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 64/161 (39%), Positives = 91/161 (56%), Gaps = 14/161 (8%)

Query: 12  KLSNLITAIILSNNSFVGEIPTSIANLKGLRN-LDLSNNNLQGRIPLSLSNLTAIESMDL 70
           KLS L   + LS N+  GEIP  I  L+ L++ LDLS NN  GRIP ++S L  +ES+DL
Sbjct: 742 KLSKLF-ELRLSRNALTGEIPVEIGQLQDLQSALDLSYNNFTGRIPSTISTLPKLESLDL 800

Query: 71  SSNMLSGNIPQQLSELTSLEFFDVSDNLLTGPIPRGKQFDTFGKSSFDGNPGLCGGPLSK 130
           S N L G +P Q+ ++ SL + ++S N L G +   KQF  +   +F GN GLCG PLS 
Sbjct: 801 SHNQLVGEVPGQIGDMKSLGYLNLSYNNLEGKLK--KQFSRWQADAFVGNAGLCGSPLS- 857

Query: 131 KCDNSEASPPEEDPHSESVFAFGWKTVVIGYASGTIIGVIL 171
            C+ +          S++  +   KTVVI  A  ++  + L
Sbjct: 858 HCNRA---------GSKNQRSLSPKTVVIISAISSLAAIAL 889

Together with GSO1, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons. Involved in the nuclear division phase of megagametogenesis.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGF4|FEI1_ARATH LRR receptor-like serine/threonine-protein kinase FEI 1 OS=Arabidopsis thaliana GN=FEI1 PE=1 SV=1

 Score = 90.9 bits (224), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 49/129 (37%), Positives = 70/129 (54%), Gaps = 3/129 (2%)

Query: 20  IILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNI 79
           ++L NN+  G IPT++ N   L  + L +N   G IP  + +L  ++ +D+SSN LSG I
Sbjct: 103 LMLHNNALYGAIPTALGNCTALEEIHLQSNYFTGPIPAEMGDLPGLQKLDMSSNTLSGPI 162

Query: 80  PQQLSELTSLEFFDVSDNLLTGPIPRGKQFDTFGKSSFDGNPGLCGGPLSKKCDNSEASP 139
           P  L +L  L  F+VS+N L G IP       F K+SF GN  LCG  +   C +   +P
Sbjct: 163 PASLGQLKKLSNFNVSNNFLVGQIPSDGVLSGFSKNSFIGNLNLCGKHVDVVCQDDSGNP 222

Query: 140 PEEDPHSES 148
                HS+S
Sbjct: 223 SS---HSQS 228

Involved in the signaling pathway that regulates cell wall function, including cellulose biosynthesis, likely via an 1-aminocyclopropane-1-carboxylic acid (ACC)-mediated signal (a precursor of ethylene).

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9C9N5|Y1668_ARATH Probable inactive leucine-rich repeat receptor-like protein kinase At1g66830 OS=Arabidopsis thaliana GN=At1g66830 PE=1 SV=1

 Score = 90.5 bits (223), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 54/157 (34%), Positives = 82/157 (52%), Gaps = 2/157 (1%)

Query: 17  ITAIILSNNSFVGEIPTSI-ANLKGLRNLDLSNNNLQGRIPLSLSNLTAIE-SMDLSSNM 74
           +  ++LS NSF G++PT + +NL  LR L+LS N L G IP  + +L  ++ ++DLS N 
Sbjct: 164 LKTLVLSKNSFSGDLPTGLGSNLVHLRTLNLSFNRLTGTIPEDVGSLENLKGTLDLSHNF 223

Query: 75  LSGNIPQQLSELTSLEFFDVSDNLLTGPIPRGKQFDTFGKSSFDGNPGLCGGPLSKKCDN 134
            SG IP  L  L  L + D+S N L+GPIP+       G ++F GNP LCG P+   C  
Sbjct: 224 FSGMIPTSLGNLPELLYVDLSYNNLSGPIPKFNVLLNAGPNAFQGNPFLCGLPIKISCST 283

Query: 135 SEASPPEEDPHSESVFAFGWKTVVIGYASGTIIGVIL 171
                     ++          +++    GT+ G+I 
Sbjct: 284 RNTQVVPSQLYTRRANHHSRLCIILTATGGTVAGIIF 320

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	207
224140511	894	predicted protein [Populus trichocarpa]	0.971	0.224	0.545	2e-52
359485822	993	PREDICTED: receptor-like protein 12-like	0.961	0.200	0.545	3e-52
224140505	993	predicted protein [Populus trichocarpa]	0.985	0.205	0.524	8e-52
224140509	961	predicted protein [Populus trichocarpa]	0.961	0.207	0.542	8e-52
297745044	813	unnamed protein product [Vitis vinifera]	0.985	0.250	0.512	3e-51
147782974	1719	hypothetical protein VITISV_036826 [Viti	0.942	0.113	0.521	1e-50
224140513	947	predicted protein [Populus trichocarpa]	0.985	0.215	0.531	3e-50
255548694	984	serine/threonine-protein kinase bri1, pu	0.975	0.205	0.519	2e-49
359490156	886	PREDICTED: receptor-like protein 12-like	0.971	0.226	0.509	2e-49
224140521	888	predicted protein [Populus trichocarpa]	0.932	0.217	0.547	3e-49

>gi|224140511|ref|XP_002323626.1| predicted protein [Populus trichocarpa] gi|222868256|gb|EEF05387.1| predicted protein [Populus trichocarpa]

 Score =  210 bits (535), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 113/207 (54%), Positives = 139/207 (67%), Gaps = 6/207 (2%)

Query: 1   MSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLS 60
           M+NKG    YEK+ + ++AI LS+N F G IP  + +LK L  L+LSNN L GRIP SLS
Sbjct: 688 MTNKGVMTLYEKIQDSLSAIDLSSNGFEGGIPEVLGDLKALHLLNLSNNFLSGRIPPSLS 747

Query: 61  NLTAIESMDLSSNMLSGNIPQQLSELTSLEFFDVSDNLLTGPIPRGKQFDTFGKSSFDGN 120
           NL  +E++DLS N LSG IP QL++LT LE F+VS N L+GPIPRG QF  F  +SFD N
Sbjct: 748 NLKELEALDLSHNKLSGEIPVQLAQLTFLEIFNVSHNFLSGPIPRGNQFGAFDSTSFDAN 807

Query: 121 PGLCGGPLSKKCDNSEASP---PEEDPHSESVFAFGWKTVVIGYASGTIIGVILGHIFST 177
            GLCG PLSKKC N +  P   PEED  S     FGWK VVIGYA+G +IGVILG + +T
Sbjct: 808 SGLCGEPLSKKCGN-DVDPLPAPEEDGGSGYPLEFGWKVVVIGYATGLLIGVILGCVMNT 866

Query: 178 RKYEWLAKTF--HLQPKANGRRRRVER 202
           RKYEW+ K +    Q K    + R+ R
Sbjct: 867 RKYEWVVKNYFARWQNKGQHLKNRLRR 893

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359485822|ref|XP_003633342.1| PREDICTED: receptor-like protein 12-like [Vitis vinifera]

 Score =  210 bits (534), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 109/200 (54%), Positives = 137/200 (68%), Gaps = 1/200 (0%)

Query: 1   MSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLS 60
           M+NKG   EYE + +++ AI LS+N F GEIP SI N  GLR L+LSNN L G IP SL+
Sbjct: 789 MTNKGMTREYELIPDILIAIDLSSNRFHGEIPESIGNPNGLRWLNLSNNALIGAIPTSLA 848

Query: 61  NLTAIESMDLSSNMLSGNIPQQLSELTSLEFFDVSDNLLTGPIPRGKQFDTFGKSSFDGN 120
           NLT +E++DLS N LS  IPQQL +LT L FF+VS N LTGPIP+GKQF TF ++SFDGN
Sbjct: 849 NLTLLEALDLSQNKLSREIPQQLVQLTFLAFFNVSHNHLTGPIPQGKQFATFSRASFDGN 908

Query: 121 PGLCGGPLSKKCDNSEASPPEEDPHSE-SVFAFGWKTVVIGYASGTIIGVILGHIFSTRK 179
           PGLCG PLS+ C +SE SPP      + S   F WK V++G  SG +IGV +G+  ++ K
Sbjct: 909 PGLCGSPLSRACGSSEQSPPTPSSSKQGSTSEFDWKFVLMGCGSGLVIGVSIGYCLTSWK 968

Query: 180 YEWLAKTFHLQPKANGRRRR 199
           +EW  KTF  Q     R+ R
Sbjct: 969 HEWFVKTFGKQHTKWTRKER 988

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224140505|ref|XP_002323623.1| predicted protein [Populus trichocarpa] gi|222868253|gb|EEF05384.1| predicted protein [Populus trichocarpa]

 Score =  209 bits (531), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 108/206 (52%), Positives = 140/206 (67%), Gaps = 2/206 (0%)

Query: 1   MSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLS 60
           ++NKG    YEK+ + ++AI LS+N F G IP  + +LK L  L+LSNN L G IP SLS
Sbjct: 787 ITNKGVMRLYEKIQDSLSAIDLSSNGFEGGIPEVLGDLKELHLLNLSNNFLSGGIPPSLS 846

Query: 61  NLTAIESMDLSSNMLSGNIPQQLSELTSLEFFDVSDNLLTGPIPRGKQFDTFGKSSFDGN 120
           NL  +E++DLS N LSG IP +L++LT LE F+VS N L+GPIPRG QF TF  +SFD N
Sbjct: 847 NLKELEALDLSQNKLSGEIPVKLAQLTFLEVFNVSHNFLSGPIPRGNQFGTFENTSFDAN 906

Query: 121 PGLCGGPLSKKCDNSEASPP--EEDPHSESVFAFGWKTVVIGYASGTIIGVILGHIFSTR 178
           PGLCG PLSK+C N E S P  +ED  S     FGWK VV+GYASG + GVI+G + +TR
Sbjct: 907 PGLCGEPLSKECGNDEDSLPAAKEDEGSGYPLEFGWKVVVVGYASGVVNGVIIGCVMNTR 966

Query: 179 KYEWLAKTFHLQPKANGRRRRVERHR 204
           KYEW+ K +  + +  G+  +   HR
Sbjct: 967 KYEWVVKNYFARRQNKGQNLKTRLHR 992

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224140509|ref|XP_002323625.1| predicted protein [Populus trichocarpa] gi|222868255|gb|EEF05386.1| predicted protein [Populus trichocarpa]

 Score =  209 bits (531), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 109/201 (54%), Positives = 137/201 (68%), Gaps = 2/201 (0%)

Query: 1   MSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLS 60
           M+NKG    YEK+   +TAI LS+N F G IP ++ +LK L  L+LSNN L GRIP SLS
Sbjct: 756 MTNKGVMTLYEKIQEFLTAIDLSSNRFEGGIPDALGDLKELYLLNLSNNFLTGRIPPSLS 815

Query: 61  NLTAIESMDLSSNMLSGNIPQQLSELTSLEFFDVSDNLLTGPIPRGKQFDTFGKSSFDGN 120
           NL  +E++DLS N LSG IP QL++LT L  F+VS NLL+GPIPRG QF+TF  +SFD +
Sbjct: 816 NLKGLEALDLSQNKLSGEIPVQLAQLTFLAVFNVSHNLLSGPIPRGNQFETFDSTSFDAD 875

Query: 121 PGLCGGPLSKKCDNSEAS--PPEEDPHSESVFAFGWKTVVIGYASGTIIGVILGHIFSTR 178
            GLCG PLSKKC + E S   P+ED  S S   FGW  VVIGYASG + G ILG + +TR
Sbjct: 876 SGLCGKPLSKKCGSGEDSLPAPKEDEGSGSPLEFGWTVVVIGYASGLVTGAILGCVMNTR 935

Query: 179 KYEWLAKTFHLQPKANGRRRR 199
           KYEW  K + +  +  G+  +
Sbjct: 936 KYEWQVKNYFVSWQHKGQYLK 956

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297745044|emb|CBI38636.3| unnamed protein product [Vitis vinifera]

 Score =  207 bits (526), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 105/205 (51%), Positives = 139/205 (67%), Gaps = 1/205 (0%)

Query: 1   MSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLS 60
           M+NKG +  YE++ ++  AI  S N+F G+IPTSI NLKGL  L+L  NNL G I  SL 
Sbjct: 562 MTNKGMQRFYEQIPDIFIAIDFSGNNFKGQIPTSIGNLKGLHLLNLGGNNLTGHISSSLG 621

Query: 61  NLTAIESMDLSSNMLSGNIPQQLSELTSLEFFDVSDNLLTGPIPRGKQFDTFGKSSFDGN 120
           +LT +ES+DLS N LSG IP QL+ +T L FF+VS+N L+GPIP+GKQF TF  +SFDGN
Sbjct: 622 DLTQLESLDLSQNQLSGEIPLQLTRITFLAFFNVSNNHLSGPIPQGKQFATFSSASFDGN 681

Query: 121 PGLCGGPLSKKCDNSEASPPEEDPHSESVFA-FGWKTVVIGYASGTIIGVILGHIFSTRK 179
           PGLCG PLS+ C +SEASPP      +   + F WK V++GY SG +IGV +G+  ++ K
Sbjct: 682 PGLCGSPLSRACGSSEASPPTSSSSKQGSTSEFDWKFVLMGYGSGLVIGVSIGYCLTSWK 741

Query: 180 YEWLAKTFHLQPKANGRRRRVERHR 204
           +EW  KTF  + +   R+ R    R
Sbjct: 742 HEWFVKTFGKRQRKWTRKERRGAQR 766

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147782974|emb|CAN66148.1| hypothetical protein VITISV_036826 [Vitis vinifera]

 Score =  205 bits (521), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 108/207 (52%), Positives = 137/207 (66%), Gaps = 12/207 (5%)

Query: 1    MSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLS 60
            M+NKG E  YEK+  +  AI  S+N F GEIPTSI  LKGL  L+ S N+L GRIP SL 
Sbjct: 1518 MTNKGMERVYEKIPGIFRAIDFSSNKFKGEIPTSIGTLKGLHLLNFSXNSLTGRIPTSLR 1577

Query: 61   NLTAIESMDLSSNMLSGNIPQQLSELTSLEFFDVSDNLLTGPIPRGKQFDTFGKSSFDGN 120
            NLT +E++DLS N L G IPQQL+E+T L FF+VS N LTGPIP+ KQFDTF   S++GN
Sbjct: 1578 NLTELEALDLSQNNLLGEIPQQLTEMTFLGFFNVSHNNLTGPIPQXKQFDTFQSDSYEGN 1637

Query: 121  PGLCGGPLSKKCDNSEASPP-----EEDPHSESVFAFGWKTVVIGYASGTIIGVILGHIF 175
            PGLCG PL +KC N + + P     E+    E    F  K V++GY S  + GVI+G+IF
Sbjct: 1638 PGLCGNPLIRKCGNPKQASPQPSTSEQGQDLEPASXFDRKVVLMGYXSXLVFGVIIGYIF 1697

Query: 176  STRKYEWLAKTFHLQPKANGRRRRVER 202
            +TRK+EW  KTF       GRR++ + 
Sbjct: 1698 TTRKHEWFVKTF-------GRRQQQQE 1717

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224140513|ref|XP_002323627.1| predicted protein [Populus trichocarpa] gi|222868257|gb|EEF05388.1| predicted protein [Populus trichocarpa]

 Score =  203 bits (517), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 110/207 (53%), Positives = 136/207 (65%), Gaps = 3/207 (1%)

Query: 1   MSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLS 60
           M+NKG    YEK+ + +T I LS N F G IP  + +LK L  L+LSNN L G IP SLS
Sbjct: 740 MTNKGVMRLYEKIQDSLTVIDLSRNGFEGGIPEVLGDLKALHLLNLSNNFLSGGIPPSLS 799

Query: 61  NLTAIESMDLSSNMLSGNIPQQLSELTSLEFFDVSDNLLTGPIPRGKQFDTFGKSSFDGN 120
           NL  +E++DLS N LSG IP QL++LT L  F+VS N L+G IPRG QF+TF  +SFD N
Sbjct: 800 NLKKLEALDLSQNKLSGEIPVQLAQLTFLAVFNVSHNFLSGRIPRGNQFETFDNTSFDAN 859

Query: 121 PGLCGGPLSKKC-DNSEASPP--EEDPHSESVFAFGWKTVVIGYASGTIIGVILGHIFST 177
           P LCG PLSK+C +N E S P  +ED  S     FGWK VVIGYASG +IGVILG   +T
Sbjct: 860 PALCGEPLSKECGNNGEDSLPAAKEDEGSGYQLEFGWKVVVIGYASGLVIGVILGCAMNT 919

Query: 178 RKYEWLAKTFHLQPKANGRRRRVERHR 204
           RKYEWL K +  + +  G+  +    R
Sbjct: 920 RKYEWLVKNYFARRQNKGQDLKTRLRR 946

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255548694|ref|XP_002515403.1| serine/threonine-protein kinase bri1, putative [Ricinus communis] gi|223545347|gb|EEF46852.1| serine/threonine-protein kinase bri1, putative [Ricinus communis]

 Score =  201 bits (511), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 109/210 (51%), Positives = 137/210 (65%), Gaps = 8/210 (3%)

Query: 1   MSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLS 60
           ++NKG E  YE++      I  S+N F G IP  I NL+ ++ L+LSNN L G+IP SL 
Sbjct: 776 ITNKGRETTYERILKFFAVINFSSNRFEGRIPEVIGNLREVQLLNLSNNILTGQIPPSLG 835

Query: 61  NLTAIESMDLSSNMLSGNIPQQLSELTSLEFFDVSDNLLTGPIPRGKQFDTFGKSSFDGN 120
           ++  +E++DLS N LSG IP +L++L+ L FF+VSDN LTGP+PRG QFDTF  +SFD N
Sbjct: 836 SMKELEALDLSRNQLSGEIPMKLAQLSFLAFFNVSDNNLTGPVPRGNQFDTFENNSFDAN 895

Query: 121 PGLCGGPLSKKCDNSEASPP-----EEDPHSESVFAFGWKTVVIGYASGTIIGVILGHIF 175
           PGLCG PLSKKC  SEAS       E+D  SE    FGWK V+ GYASG +IGV++G I 
Sbjct: 896 PGLCGNPLSKKCGFSEASTLAPSNFEQDQGSEFPLEFGWKVVLFGYASGLVIGVVIGCIL 955

Query: 176 STRKYEWLAKTF-HLQPKANGRRRRVERHR 204
            T K EWL  TF + Q K   RR   E  R
Sbjct: 956 DTEKNEWLVNTFANWQLKV--RRTLCEIWR 983

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359490156|ref|XP_003634044.1| PREDICTED: receptor-like protein 12-like [Vitis vinifera]

 Score =  201 bits (510), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 104/204 (50%), Positives = 137/204 (67%), Gaps = 3/204 (1%)

Query: 1   MSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLS 60
           M+N+G +  YEK+ ++  AI  S N+F G+IPTSI NL G   L+L +NNL G IP SL 
Sbjct: 683 MTNRGMQRFYEKIPDVFIAIDFSGNNFKGQIPTSIGNLNGFHLLNLGSNNLTGHIPSSLG 742

Query: 61  NLTAIESMDLSSNMLSGNIPQQLSELTSLEFFDVSDNLLTGPIPRGKQFDTFGKSSFDGN 120
           +LT +ES+DLS N LSG IP QL+ +T L FF+VS N LTGPIP+G QF TF  +SFDGN
Sbjct: 743 DLTQLESLDLSQNQLSGEIPLQLTRITFLAFFNVSHNHLTGPIPQGNQFTTFPNASFDGN 802

Query: 121 PGLCGGPLSKKCDNSEASPPEEDPHSESVFA-FGWKTVVIGYASGTIIGVILGHIFSTRK 179
            GLCG PLS+ C +SEASPP      +   + F WK V++GY SG +IGV +G+  ++ K
Sbjct: 803 LGLCGSPLSRACGSSEASPPTSSSSKQGSTSEFDWKFVLMGYGSGLVIGVSIGYYLTSWK 862

Query: 180 YEWLAKTFHLQPKANGRRRRVERH 203
           +EW  KTF  + +   R+ R  RH
Sbjct: 863 HEWFVKTFGKRQRKWTRKER--RH 884

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224140521|ref|XP_002323631.1| predicted protein [Populus trichocarpa] gi|222868261|gb|EEF05392.1| predicted protein [Populus trichocarpa]

 Score =  200 bits (509), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 110/201 (54%), Positives = 135/201 (67%), Gaps = 8/201 (3%)

Query: 1   MSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLS 60
           M+NKG    YEK+ + ++AI LS+N F G IP ++ +LK L  L+LS N L GRIP SLS
Sbjct: 693 MTNKGVMRLYEKIQDSLSAIDLSSNGFEGGIPEALGDLKALHLLNLSYNFLTGRIPPSLS 752

Query: 61  NLTAIESMDLSSNMLSGNIPQQLSELTSLEFFDVSDNLLTGPIPRGKQFDTFGKSSFDGN 120
           NL  +E++DLS N LSG IP QL++LT L  F+VS N L+G IPRG QF+TF  +SFD N
Sbjct: 753 NLKELEALDLSQNKLSGEIPVQLAQLTFLAVFNVSHNFLSGRIPRGNQFETFDNTSFDAN 812

Query: 121 PGLCGGPLSKKCDNSEASPP--EEDPHSESVFAFGWKTVVIGYASGTIIGVILGHIFSTR 178
           PGLCG PLSK+C N E S P  +ED  S S     WK VVIGYASG +IGVILG   +TR
Sbjct: 813 PGLCGEPLSKECGNGEDSLPAAKEDEGSGSPPESRWKVVVIGYASGLVIGVILGCAMNTR 872

Query: 179 KYEWLAKTFHLQPKANGRRRR 199
           KYEWL + +        RR R
Sbjct: 873 KYEWLVENYF------ARRHR 887

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	207
TAIR|locus:2046397	589	RLP22 "receptor like protein 2	0.874	0.307	0.456	2.5e-37
TAIR|locus:2173777	792	RLP54 "receptor like protein 5	0.898	0.234	0.452	1.6e-34
TAIR|locus:2086979	890	RLP42 "receptor like protein 4	0.869	0.202	0.461	2.7e-34
TAIR|locus:2046585	808	RLP27 "receptor like protein 2	0.869	0.222	0.450	3.5e-34
TAIR|locus:2046600	800	RLP26 "receptor like protein 2	0.879	0.227	0.431	5.6e-34
TAIR|locus:2086974	881	RLP41 "AT3G25010" [Arabidopsis	0.864	0.203	0.462	7.2e-34
TAIR|locus:2205005	1019	RLP7 "AT1G47890" [Arabidopsis	0.937	0.190	0.402	9.8e-34
TAIR|locus:2046500	218	RLP25 "receptor like protein 2	0.879	0.834	0.421	1.2e-33
TAIR|locus:2046515	864	RLP24 "receptor like protein 2	0.874	0.209	0.434	1.8e-33
TAIR|locus:2087253	884	RLP39 "AT3G24900" [Arabidopsis	0.888	0.208	0.444	2.5e-33

TAIR|locus:2046397 RLP22 "receptor like protein 22" [Arabidopsis thaliana (taxid:3702)]

 Score = 402 (146.6 bits), Expect = 2.5e-37, P = 2.5e-37
 Identities = 83/182 (45%), Positives = 108/182 (59%)

Query:     4 KGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLT 63
             KG  +E  K+    +AI  S N   GEIP SI  LK L  L+LSNN+  G IP+S +N+T
Sbjct:   396 KGLYMEQGKVLTFYSAIDFSGNKLEGEIPESIGLLKTLIALNLSNNSFTGHIPMSFANVT 455

Query:    64 AIESMDLSSNMLSGNIPQQLSELTSLEFFDVSDNLLTGPIPRGKQFDTFGKSSFDGNPGL 123
              +ES+DLS N LSG IPQ+L  L+ L + DVSDN LTG IP+G Q     KSSF+GN GL
Sbjct:   456 ELESLDLSGNKLSGEIPQELGRLSYLAYIDVSDNQLTGKIPQGTQIIGQPKSSFEGNSGL 515

Query:   124 CGGPLSKKCDNSEASPPEEDPHSESVFAFGWKTVVIGYASGTIIGVILGHIFSTRKYEWL 183
             CG PL + C   +A P  ++P  E      W+   IGY  G + G+ +GH+ +  K  W 
Sbjct:   516 CGLPLEESCLREDA-PSTQEPEEEEEEILEWRAAAIGYGPGVLFGLAIGHVVALYKPGWF 574

Query:   184 AK 185
              K
Sbjct:   575 IK 576

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2173777 RLP54 "receptor like protein 54" [Arabidopsis thaliana (taxid:3702)]

 Score = 383 (139.9 bits), Expect = 1.6e-34, P = 1.6e-34
 Identities = 86/190 (45%), Positives = 110/190 (57%)

Query:     4 KGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLT 63
             KG  +E  K+ +  T+I  S NSF G+IP SI +LK L  LDLSNN+  GRIP SL+ L 
Sbjct:   603 KGRSIELGKIPDTYTSIDFSGNSFEGQIPESIGDLKSLIVLDLSNNSFTGRIPSSLAKLK 662

Query:    64 AIESMDLSSNMLSGNIPQQLSELTSLEFFDVSDNLLTGPIPRGKQFDTFGKSSFDGNPGL 123
              +ES+DLS N +SGNIPQ+L ELT L + ++S N LTG IP+  Q     KSSF+GN  L
Sbjct:   663 QLESLDLSQNRISGNIPQELRELTFLGYVNMSHNRLTGQIPQSTQVGGQPKSSFEGNINL 722

Query:   124 CGGPLSKKC--DNSEASPP--EEDPHSESVFAFGWKTVVIGYASGTIIGVILGHIFSTRK 179
             CG PL + C   N   S P  +E    +   A  WK   IGY  G + G+ +G  F+  K
Sbjct:   723 CGLPLQESCLRGNGVPSTPHTQEQELPKQEHALNWKAAAIGYGPGVLFGLAIGQAFARYK 782

Query:   180 YEWLAKTFHL 189
                  K F L
Sbjct:   783 PVLFYKLFRL 792

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

TAIR|locus:2086979 RLP42 "receptor like protein 42" [Arabidopsis thaliana (taxid:3702)]

 Score = 382 (139.5 bits), Expect = 2.7e-34, P = 2.7e-34
 Identities = 85/184 (46%), Positives = 106/184 (57%)

Query:     4 KGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLT 63
             KG  +E E +      I LS N   GEIP S+  LK L  L+LSNN   G IPLSL+NL 
Sbjct:   689 KGLSMEQENVLTSSATIDLSGNRLEGEIPESLGLLKALIALNLSNNAFTGHIPLSLANLK 748

Query:    64 AIESMDLSSNMLSGNIPQQLSELTSLEFFDVSDNLLTGPIPRGKQFDTFGKSSFDGNPGL 123
              IES+DLSSN LSG IP  L  L+ L + +VS N L G IP+G Q     KSSF+GN GL
Sbjct:   749 KIESLDLSSNQLSGTIPNGLGTLSFLAYMNVSHNQLNGEIPQGTQITGQPKSSFEGNAGL 808

Query:   124 CGGPLSKKCDNSEASP---P-EEDPHSESVFAFGWKTVVIGYASGTIIGVILGHIFSTRK 179
             CG PL + C  + A P   P EE+   E      WK V IGY  G ++G+ +  + ++ K
Sbjct:   809 CGFPLQESCFGTNAPPAQKPKEEEEAEEDEQELNWKAVAIGYGVGVLLGLAIAQLIASYK 868

Query:   180 YEWL 183
              EWL
Sbjct:   869 PEWL 872

GO:0005576 "extracellular region" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2046585 RLP27 "receptor like protein 27" [Arabidopsis thaliana (taxid:3702)]

 Score = 380 (138.8 bits), Expect = 3.5e-34, P = 3.5e-34
 Identities = 82/182 (45%), Positives = 105/182 (57%)

Query:     4 KGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLT 63
             KG  +E  K+      I  S N   G+IP SI  LK L  L+LSNN   G IPLSL+N+T
Sbjct:   591 KGLFMEQGKVLTSYATIDFSGNKLEGQIPESIGLLKALIALNLSNNAFTGHIPLSLANVT 650

Query:    64 AIESMDLSSNMLSGNIPQQLSELTSLEFFDVSDNLLTGPIPRGKQFDTFGKSSFDGNPGL 123
              +ES+DLS N LSG IP  L  L+ L +  V+ N L G IP+G Q     KSSF+GN GL
Sbjct:   651 ELESLDLSRNQLSGTIPNGLKTLSFLAYISVAHNQLIGEIPQGTQITGQSKSSFEGNAGL 710

Query:   124 CGGPLSKKCDNSEASPPEEDPHSESVFAFGWKTVVIGYASGTIIGVILGHIFSTRKYEWL 183
             CG PL   C       P+E+   E V    WK VVIGY  G ++G+I+ H+ ++ K +WL
Sbjct:   711 CGLPLQGSCFAPPTPQPKEEDEDEEVL--NWKAVVIGYWPGLLLGLIMAHVIASFKPKWL 768

Query:   184 AK 185
              K
Sbjct:   769 VK 770

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2046600 RLP26 "receptor like protein 26" [Arabidopsis thaliana (taxid:3702)]

 Score = 378 (138.1 bits), Expect = 5.6e-34, P = 5.6e-34
 Identities = 79/183 (43%), Positives = 106/183 (57%)

Query:     4 KGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLT 63
             KG  +E  K+    + I  S N   G+IP SI  LK L  L+LSNN   G IP+SL+N+T
Sbjct:   581 KGLFMEQGKVLTFYSTIDFSGNKLEGQIPESIGLLKELIALNLSNNAFTGHIPMSLANVT 640

Query:    64 AIESMDLSSNMLSGNIPQQLSELTSLEFFDVSDNLLTGPIPRGKQFDTFGKSSFDGNPGL 123
              +ES+DLS N LSGNIP++L  L+ L +  V+ N L G IP+G QF    +SSF+GN GL
Sbjct:   641 ELESLDLSRNQLSGNIPRELGSLSFLAYISVAHNQLKGEIPQGPQFSGQAESSFEGNVGL 700

Query:   124 CGGPLSKKCDNSEAS-PPEEDPHSESVFAFGWKTVVIGYASGTIIGVILGHIFSTRKYEW 182
             CG PL   C       P EED   E      WK V  GY  G ++G+++ H+ ++ K +W
Sbjct:   701 CGLPLQGSCVAPPTKYPKEEDEEEEEDEVIEWKAVFFGYWPGLLLGLVMAHVIASFKPKW 760

Query:   183 LAK 185
               K
Sbjct:   761 FVK 763

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2086974 RLP41 "AT3G25010" [Arabidopsis thaliana (taxid:3702)]

 Score = 378 (138.1 bits), Expect = 7.2e-34, P = 7.2e-34
 Identities = 86/186 (46%), Positives = 108/186 (58%)

Query:     4 KGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLT 63
             KG  +E + +      I LS N   GEIP SI  LK L  L+LSNN   G IPLSL+NL 
Sbjct:   690 KGLSMEQKWVLTSSATIDLSGNRLEGEIPESIGLLKALIALNLSNNAFTGHIPLSLANLV 749

Query:    64 AIESMDLSSNMLSGNIPQQLSELTSLEFFDVSDNLLTGPIPRGKQFDTFGKSSFDGNPGL 123
              IES+DLSSN LSG IP  L  L+ L + +VS N L G IP+G Q     KSSF+GN GL
Sbjct:   750 KIESLDLSSNQLSGTIPNGLGTLSFLAYVNVSHNQLNGEIPQGTQITGQPKSSFEGNAGL 809

Query:   124 CGGPLSKKCDNSEASPP-----EEDPHSESVFAFGWKTVVIGYASGTIIGVILGHIFSTR 178
             CG PL ++C  + A P      EED   E V    W+ V IGY  G ++G+ +  + ++ 
Sbjct:   810 CGLPLQQRCFGTNAPPAHQFKEEEDEEQEQVL--NWEGVAIGYGVGVLLGLAIAQLIASY 867

Query:   179 KYEWLA 184
             K EWLA
Sbjct:   868 KPEWLA 873

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

TAIR|locus:2205005 RLP7 "AT1G47890" [Arabidopsis thaliana (taxid:3702)]

 Score = 378 (138.1 bits), Expect = 9.8e-34, P = 9.8e-34
 Identities = 80/199 (40%), Positives = 118/199 (59%)

Query:     1 MSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLS 60
             + +KG  +E E++  + TAI LS N   G+IP SI  LK LR L++S+N   G IP SL+
Sbjct:   817 LMSKGVSMEMERVLTIYTAIDLSGNQLHGKIPDSIGLLKELRILNMSSNGFTGHIPSSLA 876

Query:    61 NLTAIESMDLSSNMLSGNIPQQLSELTSLEFFDVSDNLLTGPIPRGKQFDTFGKSSFDGN 120
             NL  +ES+D+S N +SG IP +L  L+SL + +VS N L G IP+G QF     SS++GN
Sbjct:   877 NLKNLESLDISQNNISGEIPPELGTLSSLAWINVSHNQLVGSIPQGTQFQRQKCSSYEGN 936

Query:   121 PGLCGGPLSKKCDN-SEASPPEEDP----HSESVFAFGWKTVVIGYASGTIIGVILGHIF 175
             PGL G  L   C +  E++P + +P      E   +F W    +G+A G + G+ +G+I 
Sbjct:   937 PGLNGPSLENVCGHIKESTPTQTEPLETKEEEEEESFSWIAAGLGFAPGVVFGLAMGYIV 996

Query:   176 STRKYEWLAKTFHLQPKAN 194
              + K++W  KTF    + N
Sbjct:   997 VSYKHQWFMKTFGRSKQQN 1015

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC;RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2046500 RLP25 "receptor like protein 25" [Arabidopsis thaliana (taxid:3702)]

 Score = 366 (133.9 bits), Expect = 1.2e-33, P = 1.2e-33
 Identities = 78/185 (42%), Positives = 107/185 (57%)

Query:     4 KGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLT 63
             KG  +E +++  L +AI  S N   G+IP SI  LK L  L+LSNN   G IP+S++NL 
Sbjct:    24 KGLHMEQKRILTLYSAIDFSGNRLEGQIPESIGLLKALIALNLSNNAFIGNIPMSMANLI 83

Query:    64 AIESMDLSSNMLSGNIPQQLSELTSLEFFDVSDNLLTGPIPRGKQFDTFGKSSFDGNPGL 123
              +ES+D+S N LSG IPQ L  L+ L + +VS N L G IP+G Q     KSSF+GN GL
Sbjct:    84 ELESLDMSRNGLSGTIPQGLKTLSFLGYINVSHNQLKGEIPQGTQITGPPKSSFEGNAGL 143

Query:   124 CGGPLSKKCDNSEASPPEE---DPHSESVFAFGWKTVVIGYASGTIIGVILGHIFSTRKY 180
             CG PL + C  ++  P ++   + + E      WK V  GY  G   G+ +  I ++ K 
Sbjct:   144 CGLPLEESCFGTKVPPIQQSKKEDNQEDAKVLNWKAVATGYGPGVFFGLAIAQIIASYKP 203

Query:   181 EWLAK 185
             EWL K
Sbjct:   204 EWLVK 208

GO:0005886 "plasma membrane" evidence=ISM

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2046515 RLP24 "receptor like protein 24" [Arabidopsis thaliana (taxid:3702)]

 Score = 374 (136.7 bits), Expect = 1.8e-33, P = 1.8e-33
 Identities = 80/184 (43%), Positives = 106/184 (57%)

Query:     4 KGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLT 63
             KG  +E E++     AI  S N   G+IP SI  LK L  L+LSNN   G IPLS +NL 
Sbjct:   678 KGLHMEQERVLTSYAAIDFSGNRLQGQIPESIGLLKALIALNLSNNAFTGHIPLSFANLM 737

Query:    64 AIESMDLSSNMLSGNIPQQLSELTSLEFFDVSDNLLTGPIPRGKQFDTFGKSSFDGNPGL 123
              +ES+D+S N LSG IP  L  L+ L +  V+ N L G IP+G Q     KSSF+GN GL
Sbjct:   738 NLESLDMSGNQLSGTIPNGLGSLSFLVYISVAHNKLKGEIPQGTQITGQIKSSFEGNAGL 797

Query:   124 CGGPLSKKCDNSEASP--PEEDPHSESVFAFGWKTVVIGYASGTIIGVILGHIFSTRKYE 181
             CG PL + C +S   P  P+++   +      WK V IGYA G + G+ + H+ ++ K E
Sbjct:   798 CGLPLQETCFDSSVPPIQPKQEDEEKGE-VINWKAVAIGYAPGLLFGLAIAHLIASYKPE 856

Query:   182 WLAK 185
             WL K
Sbjct:   857 WLVK 860

GO:0005886 "plasma membrane" evidence=ISM

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2087253 RLP39 "AT3G24900" [Arabidopsis thaliana (taxid:3702)]

 Score = 373 (136.4 bits), Expect = 2.5e-33, P = 2.5e-33
 Identities = 84/189 (44%), Positives = 107/189 (56%)

Query:     4 KGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLT 63
             KG  +E  ++ +    I  S N   GEIP SI  LK L  L+LSNN   G IPLSL+NL 
Sbjct:   691 KGLSMEQNRVLSSSATIDFSGNRLEGEIPESIGLLKALIALNLSNNAFTGHIPLSLANLK 750

Query:    64 AIESMDLSSNMLSGNIPQQLSELTSLEFFDVSDNLLTGPIPRGKQFDTFGKSSFDGNPGL 123
              IES+DLSSN LSG IP  +  L+ L + +VS N L G IP+G Q     KSSF+GN GL
Sbjct:   751 KIESLDLSSNQLSGTIPNGIGTLSFLAYMNVSHNQLNGEIPQGTQITGQPKSSFEGNAGL 810

Query:   124 CGGPLSKKCDNSEASP---P--EEDPHSESVFAFGWKTVVIGYASGTIIGVILGHIFSTR 178
             CG PL + C  + A P   P  EE+   E      WK V IGY  G ++G+ +  + ++ 
Sbjct:   811 CGLPLQESCFGTNAPPAQHPKEEEEEEEEEEQVLNWKGVGIGYGVGVLLGLAIAQLIASY 870

Query:   179 KYEWLAKTF 187
             K EWL   F
Sbjct:   871 KPEWLVFLF 879

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00161208 hypothetical protein (894 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	207
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-22
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-19
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-17
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	5e-16
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	6e-16
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-15
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	6e-15
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-14
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-14
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-14
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-13
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-12
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-12
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	9e-12
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-11
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-11
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	9e-11
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-08
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	5e-06
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	7e-06
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	9e-06
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	2e-05
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	1e-04

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 94.1 bits (234), Expect = 2e-22
 Identities = 44/125 (35%), Positives = 70/125 (56%), Gaps = 14/125 (11%)

Query: 16  LITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNML 75
            I  + L N    G IP  I+ L+ L++++LS N+++G IP SL ++T++E +DLS N  
Sbjct: 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSF 478

Query: 76  SGNIPQQLSELTSLEFFDVSDNLLTGPIP--------RGKQFDTFGKSSFDGNPGLCGGP 127
           +G+IP+ L +LTSL   +++ N L+G +P            F+      F  N GLCG P
Sbjct: 479 NGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFN------FTDNAGLCGIP 532

Query: 128 LSKKC 132
             + C
Sbjct: 533 GLRAC 537

Length = 623

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 86.1 bits (213), Expect = 1e-19
 Identities = 48/119 (40%), Positives = 64/119 (53%), Gaps = 6/119 (5%)

Query: 22  LSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQ 81
           LS N   GEIP  +++ K L +LDLS+N L G+IP S S +  +  +DLS N LSG IP+
Sbjct: 506 LSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPK 565

Query: 82  QLSELTSLEFFDVSDNLLTGPIPRGKQFDTFGKSSFDGNPGLCGGPLSKKCDNSEASPP 140
            L  + SL   ++S N L G +P    F     S+  GN  LCGG      D +   PP
Sbjct: 566 NLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCGG------DTTSGLPP 618

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 78.7 bits (194), Expect = 4e-17
 Identities = 40/85 (47%), Positives = 48/85 (56%)

Query: 20  IILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNI 79
           I L  N+  GEIP  I  L  L +LDL  NNL G IP SL NL  ++ + L  N LSG I
Sbjct: 217 IYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPI 276

Query: 80  PQQLSELTSLEFFDVSDNLLTGPIP 104
           P  +  L  L   D+SDN L+G IP
Sbjct: 277 PPSIFSLQKLISLDLSDNSLSGEIP 301

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 75.3 bits (185), Expect = 5e-16
 Identities = 42/92 (45%), Positives = 60/92 (65%), Gaps = 1/92 (1%)

Query: 13  LSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSS 72
           + NL T + LSNN   GEIP  I +   L+ LDL  N L G+IP SL+NLT++E + L+S
Sbjct: 139 IPNLET-LDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLAS 197

Query: 73  NMLSGNIPQQLSELTSLEFFDVSDNLLTGPIP 104
           N L G IP++L ++ SL++  +  N L+G IP
Sbjct: 198 NQLVGQIPRELGQMKSLKWIYLGYNNLSGEIP 229

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 75.3 bits (185), Expect = 6e-16
 Identities = 39/84 (46%), Positives = 53/84 (63%), Gaps = 2/84 (2%)

Query: 22  LSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQ 81
           LSNN+F G IP    ++  L  LDLSNN L G IP  + + ++++ +DL  N+L G IP 
Sbjct: 125 LSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPN 182

Query: 82  QLSELTSLEFFDVSDNLLTGPIPR 105
            L+ LTSLEF  ++ N L G IPR
Sbjct: 183 SLTNLTSLEFLTLASNQLVGQIPR 206

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 73.3 bits (180), Expect = 3e-15
 Identities = 40/94 (42%), Positives = 58/94 (61%), Gaps = 1/94 (1%)

Query: 13  LSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSS 72
           L  LI+ + LS+NS  GEIP  +  L+ L  L L +NN  G+IP++L++L  ++ + L S
Sbjct: 283 LQKLIS-LDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWS 341

Query: 73  NMLSGNIPQQLSELTSLEFFDVSDNLLTGPIPRG 106
           N  SG IP+ L +  +L   D+S N LTG IP G
Sbjct: 342 NKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEG 375

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 72.6 bits (178), Expect = 6e-15
 Identities = 36/82 (43%), Positives = 49/82 (59%)

Query: 25  NSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLS 84
           N+  G IP+S+ NLK L+ L L  N L G IP S+ +L  + S+DLS N LSG IP+ + 
Sbjct: 246 NNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVI 305

Query: 85  ELTSLEFFDVSDNLLTGPIPRG 106
           +L +LE   +  N  TG IP  
Sbjct: 306 QLQNLEILHLFSNNFTGKIPVA 327

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 70.6 bits (173), Expect = 2e-14
 Identities = 33/83 (39%), Positives = 50/83 (60%)

Query: 22  LSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQ 81
           L++N  VG+IP  +  +K L+ + L  NNL G IP  +  LT++  +DL  N L+G IP 
Sbjct: 195 LASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPS 254

Query: 82  QLSELTSLEFFDVSDNLLTGPIP 104
            L  L +L++  +  N L+GPIP
Sbjct: 255 SLGNLKNLQYLFLYQNKLSGPIP 277

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 70.3 bits (172), Expect = 3e-14
 Identities = 38/83 (45%), Positives = 47/83 (56%)

Query: 22  LSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQ 81
           LS N F G +P  + +L  L  L LS N L G IP  LS+   + S+DLS N LSG IP 
Sbjct: 482 LSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPA 541

Query: 82  QLSELTSLEFFDVSDNLLTGPIP 104
             SE+  L   D+S N L+G IP
Sbjct: 542 SFSEMPVLSQLDLSQNQLSGEIP 564

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 70.3 bits (172), Expect = 4e-14
 Identities = 39/114 (34%), Positives = 61/114 (53%), Gaps = 23/114 (20%)

Query: 14  SNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIP------------LSLSN 61
           S+ + +I LS  +  G+I ++I  L  ++ ++LSNN L G IP            L+LSN
Sbjct: 68  SSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSN 127

Query: 62  -----------LTAIESMDLSSNMLSGNIPQQLSELTSLEFFDVSDNLLTGPIP 104
                      +  +E++DLS+NMLSG IP  +   +SL+  D+  N+L G IP
Sbjct: 128 NNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIP 181

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 68.3 bits (167), Expect = 1e-13
 Identities = 37/83 (44%), Positives = 50/83 (60%)

Query: 22  LSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQ 81
           L  N  VG+IP S+ NL  L  L L++N L G+IP  L  + +++ + L  N LSG IP 
Sbjct: 171 LGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPY 230

Query: 82  QLSELTSLEFFDVSDNLLTGPIP 104
           ++  LTSL   D+  N LTGPIP
Sbjct: 231 EIGGLTSLNHLDLVYNNLTGPIP 253

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 66.0 bits (161), Expect = 1e-12
 Identities = 38/98 (38%), Positives = 53/98 (54%), Gaps = 3/98 (3%)

Query: 13  LSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSS 72
           L NL   + L  N   G IP SI +L+ L +LDLS+N+L G IP  +  L  +E + L S
Sbjct: 259 LKNL-QYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFS 317

Query: 73  NMLSGNIPQQLSELTSLEFFDVSDNLLTGPIPR--GKQ 108
           N  +G IP  L+ L  L+   +  N  +G IP+  GK 
Sbjct: 318 NNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKH 355

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 64.5 bits (157), Expect = 3e-12
 Identities = 40/129 (31%), Positives = 62/129 (48%), Gaps = 7/129 (5%)

Query: 15  NLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNM 74
           N +T + LS N+  GEIP  + +   L  L L +N+L+G IP SL    ++  + L  N 
Sbjct: 356 NNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNS 415

Query: 75  LSGNIPQQLSELTSLEFFDVSDNLLTGPIPRGK------QFDTFGKSSFDGN-PGLCGGP 127
            SG +P + ++L  + F D+S+N L G I   K      Q  +  ++ F G  P   G  
Sbjct: 416 FSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSK 475

Query: 128 LSKKCDNSE 136
             +  D S 
Sbjct: 476 RLENLDLSR 484

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 62.9 bits (153), Expect = 9e-12
 Identities = 31/102 (30%), Positives = 53/102 (51%), Gaps = 5/102 (4%)

Query: 14  SNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSN 73
           S  +  +IL +NS  GEIP S+   + LR + L +N+  G +P   + L  +  +D+S+N
Sbjct: 379 SGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNN 438

Query: 74  MLSGNIPQQLSELTSLEFFDVSDNLLTGPIPRGKQFDTFGKS 115
            L G I  +  ++ SL+   ++ N   G +P     D+FG  
Sbjct: 439 NLQGRINSRKWDMPSLQMLSLARNKFFGGLP-----DSFGSK 475

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 61.8 bits (150), Expect = 2e-11
 Identities = 31/85 (36%), Positives = 47/85 (55%), Gaps = 1/85 (1%)

Query: 22  LSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQ 81
           L +NSF GE+P+    L  +  LD+SNNNLQGRI     ++ +++ + L+ N   G +P 
Sbjct: 411 LQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPD 470

Query: 82  QLSELTSLEFFDVSDNLLTGPIPRG 106
                  LE  D+S N  +G +PR 
Sbjct: 471 -SFGSKRLENLDLSRNQFSGAVPRK 494

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 61.4 bits (149), Expect = 4e-11
 Identities = 33/85 (38%), Positives = 43/85 (50%)

Query: 22  LSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQ 81
           L +N F GEIP ++     L  LDLS NNL G IP  L +   +  + L SN L G IP+
Sbjct: 339 LWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPK 398

Query: 82  QLSELTSLEFFDVSDNLLTGPIPRG 106
            L    SL    + DN  +G +P  
Sbjct: 399 SLGACRSLRRVRLQDNSFSGELPSE 423

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 60.2 bits (146), Expect = 9e-11
 Identities = 27/71 (38%), Positives = 45/71 (63%), Gaps = 1/71 (1%)

Query: 37  NLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELT-SLEFFDVS 95
           N   + ++DLS  N+ G+I  ++  L  I++++LS+N LSG IP  +   + SL + ++S
Sbjct: 67  NSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLS 126

Query: 96  DNLLTGPIPRG 106
           +N  TG IPRG
Sbjct: 127 NNNFTGSIPRG 137

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 52.5 bits (126), Expect = 4e-08
 Identities = 34/94 (36%), Positives = 51/94 (54%), Gaps = 1/94 (1%)

Query: 12  KLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLS 71
           +L NL    + SNN F G+IP ++ +L  L+ L L +N   G IP +L     +  +DLS
Sbjct: 306 QLQNLEILHLFSNN-FTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLS 364

Query: 72  SNMLSGNIPQQLSELTSLEFFDVSDNLLTGPIPR 105
           +N L+G IP+ L    +L    +  N L G IP+
Sbjct: 365 TNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPK 398

Length = 968

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 42.1 bits (100), Expect = 5e-06
 Identities = 23/60 (38%), Positives = 32/60 (53%)

Query: 40 GLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEFFDVSDNLL 99
           L++LDLSNN L      +   L  ++ +DLS N L+   P+  S L SL   D+S N L
Sbjct: 1  NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 45.3 bits (107), Expect = 7e-06
 Identities = 34/101 (33%), Positives = 62/101 (61%), Gaps = 5/101 (4%)

Query: 1   MSNKGTEL--EYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLS 58
            +N  T++      L + +  + LS+N  +  +P+ + NL  L+NLDLS N+L   +P  
Sbjct: 124 DNNNITDIPPLIGLLKSNLKELDLSDNK-IESLPSPLRNLPNLKNLDLSFNDLS-DLPKL 181

Query: 59  LSNLTAIESMDLSSNMLSGNIPQQLSELTSLEFFDVSDNLL 99
           LSNL+ + ++DLS N +S ++P ++  L++LE  D+S+N +
Sbjct: 182 LSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSI 221

Length = 394

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 45.0 bits (106), Expect = 9e-06
 Identities = 28/82 (34%), Positives = 46/82 (56%), Gaps = 3/82 (3%)

Query: 22  LSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQ 81
           LS N  + ++P  ++NL  L NLDLS N +   +P  +  L+A+E +DLS+N +   +  
Sbjct: 170 LSFND-LSDLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLS 226

Query: 82  QLSELTSLEFFDVSDNLLTGPI 103
            LS L +L   ++S+N L    
Sbjct: 227 SLSNLKNLSGLELSNNKLEDLP 248

Length = 394

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 40.6 bits (96), Expect = 2e-05
 Identities = 22/56 (39%), Positives = 29/56 (51%)

Query: 20 IILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNML 75
          + LSNN        +   L  L+ LDLS NNL    P + S L ++ S+DLS N L
Sbjct: 5  LDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 41.5 bits (97), Expect = 1e-04
 Identities = 32/92 (34%), Positives = 52/92 (56%), Gaps = 4/92 (4%)

Query: 9   EYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESM 68
               LSNL   + LS N    ++P  I  L  L  LDLSNN++   +  SLSNL  +  +
Sbjct: 181 LLSNLSNL-NNLDLSGNKI-SDLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGL 237

Query: 69  DLSSNMLSGNIPQQLSELTSLEFFDVSDNLLT 100
           +LS+N    ++P+ +  L++LE  D+S+N ++
Sbjct: 238 ELSNN-KLEDLPESIGNLSNLETLDLSNNQIS 268

Length = 394

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	207
PLN03150	623	hypothetical protein; Provisional	99.85
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.78
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.61
PLN03150	623	hypothetical protein; Provisional	99.28
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.24
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.17
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	99.14
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.12
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.12
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.1
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.1
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	99.08
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.01
KOG0472	565	consensus Leucine-rich repeat protein [Function un	98.97
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	98.96
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	98.94
KOG4237	498	consensus Extracellular matrix protein slit, conta	98.93
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.92
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.78
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	98.78
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	98.7
PLN03210	1153	Resistant to P. syringae 6; Provisional	98.68
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.64
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	98.64
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	98.56
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	98.56
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	98.53
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.52
PLN03210	1153	Resistant to P. syringae 6; Provisional	98.47
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.46
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.46
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.42
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.35
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.34
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.32
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.27
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.27
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.25
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.22
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.18
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.07
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.0
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	97.89
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.89
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	97.86
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.7
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.69
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	97.64
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.25
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.04
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.97
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	96.71
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.71
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	96.59
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	96.42
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.4
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.32
PRK15386	426	type III secretion protein GogB; Provisional	96.32
KOG0473	326	consensus Leucine-rich repeat protein [Function un	95.7
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	95.25
PRK15386	426	type III secretion protein GogB; Provisional	95.09
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	94.9
KOG2123	388	consensus Uncharacterized conserved protein [Funct	94.48
KOG0473	326	consensus Leucine-rich repeat protein [Function un	94.02
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	93.49
smart00370	26	LRR Leucine-rich repeats, outliers.	93.49
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	93.0
PF08693	40	SKG6: Transmembrane alpha-helix domain; InterPro:	92.99
smart00370	26	LRR Leucine-rich repeats, outliers.	92.96
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	92.96
KOG2982	418	consensus Uncharacterized conserved protein [Funct	92.68
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	92.38
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	92.1
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	90.8
PF15102	146	TMEM154: TMEM154 protein family	90.71
PF04478	154	Mid2: Mid2 like cell wall stress sensor; InterPro:	90.57
PF12273	130	RCR: Chitin synthesis regulation, resistance to Co	89.47
PF01102	122	Glycophorin_A: Glycophorin A; InterPro: IPR001195	88.67
smart00364	26	LRR_BAC Leucine-rich repeats, bacterial type.	87.85
PF01102	122	Glycophorin_A: Glycophorin A; InterPro: IPR001195	87.46
smart00365	26	LRR_SD22 Leucine-rich repeat, SDS22-like subfamily	86.77
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	85.82
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	85.41
PF08374	221	Protocadherin: Protocadherin; InterPro: IPR013585	83.56
PF13908	179	Shisa: Wnt and FGF inhibitory regulator	83.08
PF02009	299	Rifin_STEVOR: Rifin/stevor family; InterPro: IPR00	81.64
PF04478	154	Mid2: Mid2 like cell wall stress sensor; InterPro:	81.38
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	81.19
smart00368	28	LRR_RI Leucine rich repeat, ribonuclease inhibitor	81.01
PF06697	278	DUF1191: Protein of unknown function (DUF1191); In	80.44
PF15050	133	SCIMP: SCIMP protein	80.33
PF01034	64	Syndecan: Syndecan domain; InterPro: IPR001050 The	80.13

>PLN03150 hypothetical protein; Provisional

Probab=99.85  E-value=9.4e-21  Score=166.45  Aligned_cols=118  Identities=36%  Similarity=0.657  Sum_probs=106.5

Q ss_pred             cccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCccceecCC
Q 046642           16 LITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEFFDVS   95 (207)
Q Consensus        16 ~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l~l~   95 (207)
                      .++.|+|++|.++|.+|..+..+++|+.|+|++|.+.|.+|..++.+++|+.|+|++|.++|.+|+.++.+++|+.|+++
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            37789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcCcCCCCCCCC--CCCCCcccccCCCCCCCCCCCCCCC
Q 046642           96 DNLLTGPIPRGKQ--FDTFGKSSFDGNPGLCGGPLSKKCD  133 (207)
Q Consensus        96 ~N~l~~~~p~~~~--~~~l~~~~~~~n~~~c~~~~~~~C~  133 (207)
                      +|.++|.+|....  ...+..+++.+|+.+|+.+....|.
T Consensus       499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~  538 (623)
T PLN03150        499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACG  538 (623)
T ss_pred             CCcccccCChHHhhccccCceEEecCCccccCCCCCCCCc
Confidence            9999999997532  2344567899999999987666674

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.78  E-value=1.3e-18  Score=160.39  Aligned_cols=116  Identities=39%  Similarity=0.631  Sum_probs=103.6

Q ss_pred             hhcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCccce
Q 046642           12 KLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEF   91 (207)
Q Consensus        12 ~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~   91 (207)
                      ..+++|+.|++++|.+++.+|..+..+++|+.|++++|.+++.+|..+..+++|+.|++++|.+++.+|..+..+.+|+.
T Consensus       496 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~  575 (968)
T PLN00113        496 GSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQ  575 (968)
T ss_pred             hhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCE
Confidence            45678888999999998889999999999999999999999899999999999999999999999999999999999999


Q ss_pred             ecCCCCcCcCCCCCCCCCCCCCcccccCCCCCCCCC
Q 046642           92 FDVSDNLLTGPIPRGKQFDTFGKSSFDGNPGLCGGP  127 (207)
Q Consensus        92 l~l~~N~l~~~~p~~~~~~~l~~~~~~~n~~~c~~~  127 (207)
                      +++++|++.|.+|...++..+....+.||+.+|+.+
T Consensus       576 l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~  611 (968)
T PLN00113        576 VNISHNHLHGSLPSTGAFLAINASAVAGNIDLCGGD  611 (968)
T ss_pred             EeccCCcceeeCCCcchhcccChhhhcCCccccCCc
Confidence            999999999999988888888888899999999754

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.61  E-value=4.4e-15  Score=137.09  Aligned_cols=114  Identities=36%  Similarity=0.541  Sum_probs=103.0

Q ss_pred             cccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCccceec
Q 046642           14 SNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEFFD   93 (207)
Q Consensus        14 l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l~   93 (207)
                      .++|+.|++++|.+++..|..+.++++|+.|++++|.+.+.+|..+..+++|+.|++++|.+++.+|..+..+++|+.|+
T Consensus       474 ~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~  553 (968)
T PLN00113        474 SKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLD  553 (968)
T ss_pred             cccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEE
Confidence            35788899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCcCcCCCCCC-CCCCCCCcccccCCCCCCCCC
Q 046642           94 VSDNLLTGPIPRG-KQFDTFGKSSFDGNPGLCGGP  127 (207)
Q Consensus        94 l~~N~l~~~~p~~-~~~~~l~~~~~~~n~~~c~~~  127 (207)
                      +++|++++.+|.. ..+..+..+++.+|+..+..|
T Consensus       554 Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p  588 (968)
T PLN00113        554 LSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLP  588 (968)
T ss_pred             CCCCcccccCChhHhcCcccCEEeccCCcceeeCC
Confidence            9999999988875 456678888999998876554

>PLN03150 hypothetical protein; Provisional

Probab=99.28  E-value=1e-11  Score=109.70  Aligned_cols=86  Identities=36%  Similarity=0.561  Sum_probs=78.1

Q ss_pred             CCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCccceecCCCCcCcCCCCCC-CCCCCCCcccccC
Q 046642           41 LRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEFFDVSDNLLTGPIPRG-KQFDTFGKSSFDG  119 (207)
Q Consensus        41 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~-~~~~~l~~~~~~~  119 (207)
                      ++.|+|++|.+.|.+|..+..+++|+.|+|++|.++|.+|..+..+++|+.|++++|+++|.+|.. ..+..+..+++.+
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~  499 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG  499 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence            788999999999999999999999999999999999999999999999999999999999999874 5677888888988


Q ss_pred             CCCCCCC
Q 046642          120 NPGLCGG  126 (207)
Q Consensus       120 n~~~c~~  126 (207)
                      |...+..
T Consensus       500 N~l~g~i  506 (623)
T PLN03150        500 NSLSGRV  506 (623)
T ss_pred             CcccccC
Confidence            8765543

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.24  E-value=6.7e-13  Score=96.89  Aligned_cols=83  Identities=34%  Similarity=0.567  Sum_probs=50.9

Q ss_pred             ccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCccceecC
Q 046642           15 NLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEFFDV   94 (207)
Q Consensus        15 ~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l~l   94 (207)
                      .+++.|-||+|.++ .+|+.+..+.+|+.|++++|++. .+|.+++.++.|+.|+++.|++. ..|..|+.++.|+.||+
T Consensus        33 s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldl  109 (264)
T KOG0617|consen   33 SNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDL  109 (264)
T ss_pred             hhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhhc
Confidence            34555666666666 55556666666666666666665 55666666666666666666666 55666666666666666


Q ss_pred             CCCcCc
Q 046642           95 SDNLLT  100 (207)
Q Consensus        95 ~~N~l~  100 (207)
                      ..|++.
T Consensus       110 tynnl~  115 (264)
T KOG0617|consen  110 TYNNLN  115 (264)
T ss_pred             cccccc
Confidence            655554

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.17  E-value=2.1e-12  Score=94.26  Aligned_cols=108  Identities=28%  Similarity=0.357  Sum_probs=94.2

Q ss_pred             hcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCC-CCCchhhhcCCccce
Q 046642           13 LSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLS-GNIPQQLSELTSLEF   91 (207)
Q Consensus        13 ~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~-~~~p~~~~~l~~L~~   91 (207)
                      -+.+|++|++++|+|+ .+|..++.++.|+.|+++-|++. ..|..|+.++.|+.||+.+|.+. ..+|..|..+..|+.
T Consensus        54 ~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlra  131 (264)
T KOG0617|consen   54 ELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRA  131 (264)
T ss_pred             Hhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhhccccccccccCCcchhHHHHHHH
Confidence            3678999999999999 89999999999999999999998 89999999999999999999995 368889999999999


Q ss_pred             ecCCCCcCcCCCCCCCCCCCCCcccccCCCC
Q 046642           92 FDVSDNLLTGPIPRGKQFDTFGKSSFDGNPG  122 (207)
Q Consensus        92 l~l~~N~l~~~~p~~~~~~~l~~~~~~~n~~  122 (207)
                      |++++|.|.-..|+..++..++-+.+..|..
T Consensus       132 lyl~dndfe~lp~dvg~lt~lqil~lrdndl  162 (264)
T KOG0617|consen  132 LYLGDNDFEILPPDVGKLTNLQILSLRDNDL  162 (264)
T ss_pred             HHhcCCCcccCChhhhhhcceeEEeeccCch
Confidence            9999999995555556666676666666643

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=99.14  E-value=2e-11  Score=75.18  Aligned_cols=61  Identities=43%  Similarity=0.530  Sum_probs=40.0

Q ss_pred             ccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCC
Q 046642           15 NLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNML   75 (207)
Q Consensus        15 ~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l   75 (207)
                      ++|++|++++|.|+...+..|.++++|++|++++|.++...|..|..+++|++|++++|+|
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            3566777777777654445666677777777777777655556666666777777666653

...

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.12  E-value=3.7e-12  Score=107.97  Aligned_cols=106  Identities=25%  Similarity=0.323  Sum_probs=53.8

Q ss_pred             ccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCch---hhhcCCccce
Q 046642           15 NLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQ---QLSELTSLEF   91 (207)
Q Consensus        15 ~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~---~~~~l~~L~~   91 (207)
                      ..|++|+|++|.|+...+..|..|..|+.|+|+.|+++...-..|..+.+|+.|||++|.+++.+.+   .|..+++|+.
T Consensus       317 qkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~Lrk  396 (873)
T KOG4194|consen  317 QKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRK  396 (873)
T ss_pred             ccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhh
Confidence            3344444444444433333344444444444444444333333444555555555555555544433   2445566666


Q ss_pred             ecCCCCcCcCCCCCC--CCCCCCCcccccCCC
Q 046642           92 FDVSDNLLTGPIPRG--KQFDTFGKSSFDGNP  121 (207)
Q Consensus        92 l~l~~N~l~~~~p~~--~~~~~l~~~~~~~n~  121 (207)
                      |++.+|++. .+|+.  ..+..++.+++.+|+
T Consensus       397 L~l~gNqlk-~I~krAfsgl~~LE~LdL~~Na  427 (873)
T KOG4194|consen  397 LRLTGNQLK-SIPKRAFSGLEALEHLDLGDNA  427 (873)
T ss_pred             eeecCceee-ecchhhhccCcccceecCCCCc
Confidence            666666665 45543  356667777887776

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.12  E-value=4.5e-11  Score=88.85  Aligned_cols=105  Identities=27%  Similarity=0.411  Sum_probs=38.7

Q ss_pred             hcccccEEEccCCCCCCCCchhcc-CCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhh-hcCCccc
Q 046642           13 LSNLITAIILSNNSFVGEIPTSIA-NLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQL-SELTSLE   90 (207)
Q Consensus        13 ~l~~L~~L~Ls~n~i~~~~p~~~~-~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~-~~l~~L~   90 (207)
                      -+..++.|+|++|.|+ .+. .++ .+.+|+.||+++|.++ .++ .+..++.|+.|++++|.|+ .+++.+ ..+++|+
T Consensus        17 n~~~~~~L~L~~n~I~-~Ie-~L~~~l~~L~~L~Ls~N~I~-~l~-~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~   91 (175)
T PF14580_consen   17 NPVKLRELNLRGNQIS-TIE-NLGATLDKLEVLDLSNNQIT-KLE-GLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQ   91 (175)
T ss_dssp             ---------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS----S-CHHHHHH-TT--
T ss_pred             cccccccccccccccc-ccc-chhhhhcCCCEEECCCCCCc-ccc-CccChhhhhhcccCCCCCC-ccccchHHhCCcCC
Confidence            3446789999999998 443 455 5889999999999998 454 5788999999999999999 555444 4689999


Q ss_pred             eecCCCCcCcCC--CCCCCCCCCCCcccccCCCC
Q 046642           91 FFDVSDNLLTGP--IPRGKQFDTFGKSSFDGNPG  122 (207)
Q Consensus        91 ~l~l~~N~l~~~--~p~~~~~~~l~~~~~~~n~~  122 (207)
                      .|++++|++...  +-....++.+..+++.|||.
T Consensus        92 ~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv  125 (175)
T PF14580_consen   92 ELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPV  125 (175)
T ss_dssp             EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GG
T ss_pred             EEECcCCcCCChHHhHHHHcCCCcceeeccCCcc
Confidence            999999999742  11223567778888999985

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.10  E-value=8.9e-12  Score=105.68  Aligned_cols=120  Identities=23%  Similarity=0.305  Sum_probs=100.8

Q ss_pred             hhhhcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCc---ccCCCCCCCCEEecCCCCCCCCCchhhhcC
Q 046642           10 YEKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIP---LSLSNLTAIESMDLSSNMLSGNIPQQLSEL   86 (207)
Q Consensus        10 ~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p---~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l   86 (207)
                      -+..+..|+.|.|++|.|+..-...|..+.+|+.|||++|.+++.+-   ..|..|++|+.|++.+|++.......|..+
T Consensus       336 sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl  415 (873)
T KOG4194|consen  336 SFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGL  415 (873)
T ss_pred             HHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccC
Confidence            35678899999999999998888889999999999999999987654   357889999999999999995555689999


Q ss_pred             CccceecCCCCcCcCCCCCCCCCCCCCcccccCCCCCCCCCCC
Q 046642           87 TSLEFFDVSDNLLTGPIPRGKQFDTFGKSSFDGNPGLCGGPLS  129 (207)
Q Consensus        87 ~~L~~l~l~~N~l~~~~p~~~~~~~l~~~~~~~n~~~c~~~~~  129 (207)
                      ..|++|||.+|.+....|....--.+..+-+....++|+|.+.
T Consensus       416 ~~LE~LdL~~NaiaSIq~nAFe~m~Lk~Lv~nSssflCDCql~  458 (873)
T KOG4194|consen  416 EALEHLDLGDNAIASIQPNAFEPMELKELVMNSSSFLCDCQLK  458 (873)
T ss_pred             cccceecCCCCcceeecccccccchhhhhhhcccceEEeccHH
Confidence            9999999999999976666533335667777778899999653

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.10  E-value=8.5e-12  Score=101.29  Aligned_cols=127  Identities=24%  Similarity=0.274  Sum_probs=98.8

Q ss_pred             cccchhhhhhhcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCC-CCCCCCCch
Q 046642            3 NKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSS-NMLSGNIPQ   81 (207)
Q Consensus         3 ~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~-N~l~~~~p~   81 (207)
                      .+|+.....+++...+.++|..|.|+...|..|+.+++|+.||||.|.|+.+-|++|..+++|..|-+-+ |+|+....+
T Consensus        55 ~~GL~eVP~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~  134 (498)
T KOG4237|consen   55 GKGLTEVPANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKG  134 (498)
T ss_pred             CCCcccCcccCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhh
Confidence            5777788889999999999999999988888999999999999999999988999999999887766655 999855556


Q ss_pred             hhhcCCccceecCCCCcCcCCCCC-----------------------C--CCCCCCCcccccCCCCCCCCCCC
Q 046642           82 QLSELTSLEFFDVSDNLLTGPIPR-----------------------G--KQFDTFGKSSFDGNPGLCGGPLS  129 (207)
Q Consensus        82 ~~~~l~~L~~l~l~~N~l~~~~p~-----------------------~--~~~~~l~~~~~~~n~~~c~~~~~  129 (207)
                      .|+.+.+|+.|.+.-|++.+....                       .  ..+.....+-+..||+.|+|.+.
T Consensus       135 ~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~  207 (498)
T KOG4237|consen  135 AFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLP  207 (498)
T ss_pred             HhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccc
Confidence            788887777777777766643211                       1  11223344556679999988664

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=99.08  E-value=4.4e-11  Score=73.64  Aligned_cols=61  Identities=44%  Similarity=0.626  Sum_probs=55.8

Q ss_pred             CCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCccceecCCCCcC
Q 046642           39 KGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEFFDVSDNLL   99 (207)
Q Consensus        39 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l~l~~N~l   99 (207)
                      ++|+.|++++|+++...+..|..+++|+.|++++|.++...|+.|..+++|+++++++|++
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            5789999999999966668999999999999999999977778999999999999999975

...

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.01  E-value=2.8e-11  Score=98.70  Aligned_cols=106  Identities=23%  Similarity=0.336  Sum_probs=78.2

Q ss_pred             cccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCC---------------------CCcccC-CCCCCCCEEecC
Q 046642           14 SNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQG---------------------RIPLSL-SNLTAIESMDLS   71 (207)
Q Consensus        14 l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~---------------------~~p~~~-~~l~~L~~L~ls   71 (207)
                      ++.|+.||...|-++ .+|+.++.|.+|+.|+|..|++..                     .+|... +.+++|.+||+.
T Consensus       182 m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLR  260 (565)
T KOG0472|consen  182 MKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLR  260 (565)
T ss_pred             HHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeecc
Confidence            455556666666655 556666666666666666655541                     333333 378899999999


Q ss_pred             CCCCCCCCchhhhcCCccceecCCCCcCcCCCCCCCCCCCCCcccccCCCC
Q 046642           72 SNMLSGNIPQQLSELTSLEFFDVSDNLLTGPIPRGKQFDTFGKSSFDGNPG  122 (207)
Q Consensus        72 ~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~~~~~l~~~~~~~n~~  122 (207)
                      +|+++ +.|+.+.-+.+|..||+|+|.+++..+..+.+ .+..+.+.|||.
T Consensus       261 dNklk-e~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPl  309 (565)
T KOG0472|consen  261 DNKLK-EVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPL  309 (565)
T ss_pred             ccccc-cCchHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCch
Confidence            99999 89999999999999999999999777766666 777788899983

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=98.97  E-value=1.8e-10  Score=94.02  Aligned_cols=112  Identities=26%  Similarity=0.334  Sum_probs=89.9

Q ss_pred             hhhhcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCcc
Q 046642           10 YEKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSL   89 (207)
Q Consensus        10 ~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L   89 (207)
                      +-+.+++|+.|+|++|-+. .+|.+++.+..|+.||++.|++. .+|..+..+..|+.+-.++|++....|+.+.++.+|
T Consensus       430 ~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL  507 (565)
T KOG0472|consen  430 ELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNL  507 (565)
T ss_pred             HHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhc
Confidence            3456777888888888887 78888888888888888888887 778777777777777777788886666668889999


Q ss_pred             ceecCCCCcCcCCCCCCCCCCCCCcccccCCCCC
Q 046642           90 EFFDVSDNLLTGPIPRGKQFDTFGKSSFDGNPGL  123 (207)
Q Consensus        90 ~~l~l~~N~l~~~~p~~~~~~~l~~~~~~~n~~~  123 (207)
                      ..||+.+|.+....|..+....+..+.+.|||+-
T Consensus       508 ~tLDL~nNdlq~IPp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  508 TTLDLQNNDLQQIPPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             ceeccCCCchhhCChhhccccceeEEEecCCccC
Confidence            9999999999865566677888888899999864

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=98.96  E-value=1.1e-10  Score=100.06  Aligned_cols=83  Identities=36%  Similarity=0.477  Sum_probs=46.4

Q ss_pred             cccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCc-ccCCCCCCCCEEecCCCCCCCCCchhhhcCCcccee
Q 046642           14 SNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIP-LSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEFF   92 (207)
Q Consensus        14 l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l   92 (207)
                      +..|+.||||+|+++ .+|..+..-+++..|+||+|+|. .+| +-|-++..|-.||||+|++. .+|..+..+..|++|
T Consensus       102 l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL  178 (1255)
T KOG0444|consen  102 LKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTL  178 (1255)
T ss_pred             cccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhh
Confidence            445555566666655 55555555555556666666655 333 33445555555666666655 445555555556666


Q ss_pred             cCCCCcC
Q 046642           93 DVSDNLL   99 (207)
Q Consensus        93 ~l~~N~l   99 (207)
                      +|++|++
T Consensus       179 ~Ls~NPL  185 (1255)
T KOG0444|consen  179 KLSNNPL  185 (1255)
T ss_pred             hcCCChh
Confidence            6666554

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=98.94  E-value=1.2e-10  Score=103.14  Aligned_cols=109  Identities=27%  Similarity=0.409  Sum_probs=87.0

Q ss_pred             hhhcccccEEEccCCCCCCCCch-hccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCcc
Q 046642           11 EKLSNLITAIILSNNSFVGEIPT-SIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSL   89 (207)
Q Consensus        11 ~~~l~~L~~L~Ls~n~i~~~~p~-~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L   89 (207)
                      .....+|++|+|++|.+. .+|. .+.++..|+.|+||+|+++ .+|..+.++..|++|...+|.+. .+| .+..++.|
T Consensus       379 l~~~~hLKVLhLsyNrL~-~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL  454 (1081)
T KOG0618|consen  379 LVNFKHLKVLHLSYNRLN-SFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQL  454 (1081)
T ss_pred             hccccceeeeeecccccc-cCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcc
Confidence            345677888899999887 4554 4678888888999999988 78888888888899988889888 777 68889999


Q ss_pred             ceecCCCCcCcC-CCCCCCCCCCCCcccccCCCCC
Q 046642           90 EFFDVSDNLLTG-PIPRGKQFDTFGKSSFDGNPGL  123 (207)
Q Consensus        90 ~~l~l~~N~l~~-~~p~~~~~~~l~~~~~~~n~~~  123 (207)
                      +.+|++.|+++. .+|....-+.+..++++||+++
T Consensus       455 ~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~l  489 (1081)
T KOG0618|consen  455 KVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTRL  489 (1081)
T ss_pred             eEEecccchhhhhhhhhhCCCcccceeeccCCccc
Confidence            999999999874 3343333367889999999863

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=98.93  E-value=7.3e-10  Score=90.23  Aligned_cols=90  Identities=20%  Similarity=0.207  Sum_probs=53.1

Q ss_pred             hhhcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCccc
Q 046642           11 EKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLE   90 (207)
Q Consensus        11 ~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~   90 (207)
                      ++.+++|+.|+|++|.|++.-+..|.++..++.|.|..|++.......|.++..|+.|+|.+|+|+...|..|..+.+|.
T Consensus       270 f~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~  349 (498)
T KOG4237|consen  270 FKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLS  349 (498)
T ss_pred             HhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceee
Confidence            45556666666666666655555666666666666666666544445555566666666666666655555566666666


Q ss_pred             eecCCCCcCc
Q 046642           91 FFDVSDNLLT  100 (207)
Q Consensus        91 ~l~l~~N~l~  100 (207)
                      .|++-.|++.
T Consensus       350 ~l~l~~Np~~  359 (498)
T KOG4237|consen  350 TLNLLSNPFN  359 (498)
T ss_pred             eeehccCccc
Confidence            6666555543

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.92  E-value=9.5e-10  Score=81.77  Aligned_cols=86  Identities=29%  Similarity=0.412  Sum_probs=42.3

Q ss_pred             hcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccC-CCCCCCCEEecCCCCCCCCCc-hhhhcCCccc
Q 046642           13 LSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSL-SNLTAIESMDLSSNMLSGNIP-QQLSELTSLE   90 (207)
Q Consensus        13 ~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~-~~l~~L~~L~ls~N~l~~~~p-~~~~~l~~L~   90 (207)
                      .+.+|+.|+|++|.|+ .++ .+..++.|+.|++++|+++ .++..+ ..+++|+.|++++|+|...-- ..+..+++|+
T Consensus        40 ~l~~L~~L~Ls~N~I~-~l~-~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~  116 (175)
T PF14580_consen   40 TLDKLEVLDLSNNQIT-KLE-GLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLR  116 (175)
T ss_dssp             T-TT--EEE-TTS--S---T-T----TT--EEE--SS----S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--
T ss_pred             hhcCCCEEECCCCCCc-ccc-CccChhhhhhcccCCCCCC-ccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcc
Confidence            4678999999999999 444 4788999999999999998 454444 468999999999999974211 4577899999


Q ss_pred             eecCCCCcCcC
Q 046642           91 FFDVSDNLLTG  101 (207)
Q Consensus        91 ~l~l~~N~l~~  101 (207)
                      .|++.+|+++.
T Consensus       117 ~L~L~~NPv~~  127 (175)
T PF14580_consen  117 VLSLEGNPVCE  127 (175)
T ss_dssp             EEE-TT-GGGG
T ss_pred             eeeccCCcccc
Confidence            99999999973

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.78  E-value=9.3e-10  Score=87.07  Aligned_cols=83  Identities=25%  Similarity=0.337  Sum_probs=52.8

Q ss_pred             hcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCcccee
Q 046642           13 LSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEFF   92 (207)
Q Consensus        13 ~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l   92 (207)
                      -...|+.||||+|.|+ .+..+..-++.++.|++|+|.+. .+ +.+..+++|+.||||+|.++ .+..+-..+.+.+.|
T Consensus       282 TWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~-~v-~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL  357 (490)
T KOG1259|consen  282 TWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR-TV-QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTL  357 (490)
T ss_pred             hHhhhhhccccccchh-hhhhhhhhccceeEEecccccee-ee-hhhhhcccceEeecccchhH-hhhhhHhhhcCEeee
Confidence            3455777778888777 66666666777777777777776 33 33667777777777777766 344444444444444


Q ss_pred             cCCCCcC
Q 046642           93 DVSDNLL   99 (207)
Q Consensus        93 ~l~~N~l   99 (207)
                      .+++|.+
T Consensus       358 ~La~N~i  364 (490)
T KOG1259|consen  358 KLAQNKI  364 (490)
T ss_pred             ehhhhhH
Confidence            4444443

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=98.78  E-value=1.8e-09  Score=92.89  Aligned_cols=107  Identities=31%  Similarity=0.444  Sum_probs=88.2

Q ss_pred             cccccEEEccCCCCC-CCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCc-hhhhcCCccce
Q 046642           14 SNLITAIILSNNSFV-GEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIP-QQLSELTSLEF   91 (207)
Q Consensus        14 l~~L~~L~Ls~n~i~-~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p-~~~~~l~~L~~   91 (207)
                      ++.|+.+++.+|+++ ..+|..+..|..|+.||||+|++. ..|..+..-.++-+|+||+|+|. .+| ..|.+++.|-+
T Consensus        77 Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLf  154 (1255)
T KOG0444|consen   77 LPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLF  154 (1255)
T ss_pred             chhhHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhh
Confidence            566788889999987 467888889999999999999998 88998888899999999999998 555 45778899999


Q ss_pred             ecCCCCcCcCCCCCCCCCCCCCcccccCCCC
Q 046642           92 FDVSDNLLTGPIPRGKQFDTFGKSSFDGNPG  122 (207)
Q Consensus        92 l~l~~N~l~~~~p~~~~~~~l~~~~~~~n~~  122 (207)
                      ||||+|++....|....+..+..+.+++||.
T Consensus       155 LDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL  185 (1255)
T KOG0444|consen  155 LDLSNNRLEMLPPQIRRLSMLQTLKLSNNPL  185 (1255)
T ss_pred             hccccchhhhcCHHHHHHhhhhhhhcCCChh
Confidence            9999999986666655566667777777774

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=98.70  E-value=1.1e-09  Score=97.16  Aligned_cols=107  Identities=25%  Similarity=0.378  Sum_probs=94.3

Q ss_pred             hhcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCc-ccCCCCCCCCEEecCCCCCCCCCchhhhcCCccc
Q 046642           12 KLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIP-LSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLE   90 (207)
Q Consensus        12 ~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~   90 (207)
                      .....|+.|++.+|.++..+-+.+.++++|+.|+|++|++. .+| ..+.++..|++|+||+|.++ .+|+.+..+..|+
T Consensus       356 ~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~-~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~  433 (1081)
T KOG0618|consen  356 NNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN-SFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLH  433 (1081)
T ss_pred             hhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccc-cCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhH
Confidence            34567888999999999988888999999999999999998 555 56788999999999999999 8899999999999


Q ss_pred             eecCCCCcCcCCCCCCCCCCCCCcccccCCC
Q 046642           91 FFDVSDNLLTGPIPRGKQFDTFGKSSFDGNP  121 (207)
Q Consensus        91 ~l~l~~N~l~~~~p~~~~~~~l~~~~~~~n~  121 (207)
                      +|...+|.+. ..|...++..+..++++.|.
T Consensus       434 tL~ahsN~l~-~fPe~~~l~qL~~lDlS~N~  463 (1081)
T KOG0618|consen  434 TLRAHSNQLL-SFPELAQLPQLKVLDLSCNN  463 (1081)
T ss_pred             HHhhcCCcee-echhhhhcCcceEEecccch
Confidence            9999999998 77887777888878877663

>PLN03210 Resistant to P

Probab=98.68  E-value=9.7e-08  Score=90.09  Aligned_cols=106  Identities=23%  Similarity=0.343  Sum_probs=74.7

Q ss_pred             cccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCccceec
Q 046642           14 SNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEFFD   93 (207)
Q Consensus        14 l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l~   93 (207)
                      +.+|+.|++++|.+. .++..+..+++|+.|+|+++...+.+| .+..+++|+.|++++|.....+|..+..+++|+.|+
T Consensus       610 ~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~  687 (1153)
T PLN03210        610 PENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLD  687 (1153)
T ss_pred             ccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEe
Confidence            356677777777776 566667777888888887765444566 367778888888888766557888888888888888


Q ss_pred             CCCCcCcCCCCCCCCCCCCCcccccCCC
Q 046642           94 VSDNLLTGPIPRGKQFDTFGKSSFDGNP  121 (207)
Q Consensus        94 l~~N~l~~~~p~~~~~~~l~~~~~~~n~  121 (207)
                      +++|.....+|....+..+..+.+.++.
T Consensus       688 L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~  715 (1153)
T PLN03210        688 MSRCENLEILPTGINLKSLYRLNLSGCS  715 (1153)
T ss_pred             CCCCCCcCccCCcCCCCCCCEEeCCCCC
Confidence            8886544566765555666666666653

syringae 6; Provisional

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.64  E-value=5.5e-09  Score=82.76  Aligned_cols=107  Identities=27%  Similarity=0.326  Sum_probs=85.4

Q ss_pred             hhcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCccce
Q 046642           12 KLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEF   91 (207)
Q Consensus        12 ~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~   91 (207)
                      ++.+.++.|++|+|.|. .+. .+..+++|+.||||+|.++ .+-.+-..+.+++.|.|+.|.+.. + ..+..+-+|..
T Consensus       304 KL~Pkir~L~lS~N~i~-~v~-nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~iE~-L-SGL~KLYSLvn  378 (490)
T KOG1259|consen  304 KLAPKLRRLILSQNRIR-TVQ-NLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKIET-L-SGLRKLYSLVN  378 (490)
T ss_pred             hhccceeEEecccccee-eeh-hhhhcccceEeecccchhH-hhhhhHhhhcCEeeeehhhhhHhh-h-hhhHhhhhhee
Confidence            57889999999999997 443 3888999999999999998 666666788899999999999873 3 45778889999


Q ss_pred             ecCCCCcCcC--CCCCCCCCCCCCcccccCCCCC
Q 046642           92 FDVSDNLLTG--PIPRGKQFDTFGKSSFDGNPGL  123 (207)
Q Consensus        92 l~l~~N~l~~--~~p~~~~~~~l~~~~~~~n~~~  123 (207)
                      ||+++|++..  .+...+.++.++.+.+.+||.-
T Consensus       379 LDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~  412 (490)
T KOG1259|consen  379 LDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA  412 (490)
T ss_pred             ccccccchhhHHHhcccccccHHHHHhhcCCCcc
Confidence            9999998873  2223345667777888888853

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=98.64  E-value=9.7e-08  Score=85.79  Aligned_cols=79  Identities=29%  Similarity=0.572  Sum_probs=39.8

Q ss_pred             hcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCcccee
Q 046642           13 LSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEFF   92 (207)
Q Consensus        13 ~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l   92 (207)
                      ++++++.|+|++|.|+ .+|..+.  ++|+.|++++|+++ .+|..+.  .+|+.|++++|.+. .+|..+.  .+|+.|
T Consensus       197 Ip~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L  267 (754)
T PRK15370        197 IPEQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPERLP--SALQSL  267 (754)
T ss_pred             cccCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCChhHh--CCCCEE
Confidence            5566777777777776 4554432  35666666666665 4444332  23444444444444 3333322  234444


Q ss_pred             cCCCCcCc
Q 046642           93 DVSDNLLT  100 (207)
Q Consensus        93 ~l~~N~l~  100 (207)
                      ++++|+++
T Consensus       268 ~Ls~N~L~  275 (754)
T PRK15370        268 DLFHNKIS  275 (754)
T ss_pred             ECcCCccC
Confidence            44444443

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=98.56  E-value=1.1e-07  Score=85.50  Aligned_cols=35  Identities=26%  Similarity=0.342  Sum_probs=18.3

Q ss_pred             ccceecCCCCcCcCCCCCC-CCCCCCCcccccCCCCC
Q 046642           88 SLEFFDVSDNLLTGPIPRG-KQFDTFGKSSFDGNPGL  123 (207)
Q Consensus        88 ~L~~l~l~~N~l~~~~p~~-~~~~~l~~~~~~~n~~~  123 (207)
                      +|+.|++++|+++ .+|.. ..+..+..+++.+|+..
T Consensus       423 ~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls  458 (788)
T PRK15387        423 GLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLS  458 (788)
T ss_pred             hhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCC
Confidence            3444555555555 34432 23445566677777654

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=98.56  E-value=6.4e-08  Score=86.85  Aligned_cols=81  Identities=23%  Similarity=0.380  Sum_probs=54.0

Q ss_pred             cccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCccceecCC
Q 046642           16 LITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEFFDVS   95 (207)
Q Consensus        16 ~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l~l~   95 (207)
                      +|+.|++++|.|+ .+|..   .++|+.|++++|.++ .+|..   ..+|+.|++++|.++ .+|..+..+++|+.++++
T Consensus       383 ~L~~LdLs~N~Lt-~LP~l---~s~L~~LdLS~N~Ls-sIP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs  453 (788)
T PRK15387        383 GLKELIVSGNRLT-SLPVL---PSELKELMVSGNRLT-SLPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLE  453 (788)
T ss_pred             ccceEEecCCccc-CCCCc---ccCCCEEEccCCcCC-CCCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECC
Confidence            3444444444444 23321   234566666666665 34532   235677888888888 788889999999999999


Q ss_pred             CCcCcCCCCC
Q 046642           96 DNLLTGPIPR  105 (207)
Q Consensus        96 ~N~l~~~~p~  105 (207)
                      +|++++..|.
T Consensus       454 ~N~Ls~~~~~  463 (788)
T PRK15387        454 GNPLSERTLQ  463 (788)
T ss_pred             CCCCCchHHH
Confidence            9999987654

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=98.53  E-value=1.3e-07  Score=84.94  Aligned_cols=100  Identities=26%  Similarity=0.432  Sum_probs=57.4

Q ss_pred             hcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCcccee
Q 046642           13 LSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEFF   92 (207)
Q Consensus        13 ~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l   92 (207)
                      ++++|+.|++++|.++ .+|..+.  ++|+.|++++|+++ .+|..+.  ++|+.|++++|.++ .+|..+.  ..|+.|
T Consensus       323 l~~sL~~L~Ls~N~Lt-~LP~~l~--~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt-~LP~~l~--~sL~~L  393 (754)
T PRK15370        323 LPPGLKTLEAGENALT-SLPASLP--PELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALT-NLPENLP--AALQIM  393 (754)
T ss_pred             ccccceeccccCCccc-cCChhhc--CcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCC-CCCHhHH--HHHHHH
Confidence            3455666666666666 3554442  56777777777766 4555442  46777777777776 4555443  256677


Q ss_pred             cCCCCcCcCCCCCC-----CCCCCCCcccccCCCC
Q 046642           93 DVSDNLLTGPIPRG-----KQFDTFGKSSFDGNPG  122 (207)
Q Consensus        93 ~l~~N~l~~~~p~~-----~~~~~l~~~~~~~n~~  122 (207)
                      ++++|+++ .+|..     .....+..+.+.+||.
T Consensus       394 dLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npl  427 (754)
T PRK15370        394 QASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPF  427 (754)
T ss_pred             hhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCc
Confidence            77777776 34432     1123344556666664

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.52  E-value=9.8e-09  Score=87.21  Aligned_cols=101  Identities=29%  Similarity=0.517  Sum_probs=57.9

Q ss_pred             ccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCccceecCCC
Q 046642           17 ITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEFFDVSD   96 (207)
Q Consensus        17 L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l~l~~   96 (207)
                      |++|.+++|+++ .+|..++.+..|..||.+.|.+. .+|..++.+.+|+.|++..|.+. .+|..+..|+ |..||++.
T Consensus       145 Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~Lp-Li~lDfSc  220 (722)
T KOG0532|consen  145 LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSLP-LIRLDFSC  220 (722)
T ss_pred             ceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCCc-eeeeeccc
Confidence            444555555555 45555555555555555555555 45555555555555555555555 4455555433 66777777


Q ss_pred             CcCcCCCCCC-CCCCCCCcccccCCCC
Q 046642           97 NLLTGPIPRG-KQFDTFGKSSFDGNPG  122 (207)
Q Consensus        97 N~l~~~~p~~-~~~~~l~~~~~~~n~~  122 (207)
                      |+++ .+|.. ..+..+..+.+++||.
T Consensus       221 Nkis-~iPv~fr~m~~Lq~l~LenNPL  246 (722)
T KOG0532|consen  221 NKIS-YLPVDFRKMRHLQVLQLENNPL  246 (722)
T ss_pred             Ccee-ecchhhhhhhhheeeeeccCCC
Confidence            7777 45543 4455666667777774

>PLN03210 Resistant to P

Probab=98.47  E-value=6.7e-07  Score=84.53  Aligned_cols=105  Identities=26%  Similarity=0.407  Sum_probs=69.5

Q ss_pred             hcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCC---------------------CCCEEecC
Q 046642           13 LSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLT---------------------AIESMDLS   71 (207)
Q Consensus        13 ~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~---------------------~L~~L~ls   71 (207)
                      .+++|+.|++++|...+.+|..++++++|+.|++++|...+.+|..+ .++                     +|+.|+++
T Consensus       776 ~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls  854 (1153)
T PLN03210        776 LSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDISTNISDLNLS  854 (1153)
T ss_pred             ccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccccccccCEeECC
Confidence            45688899999988777889999999999999998875433566443 333                     45566666


Q ss_pred             CCCCCCCCchhhhcCCccceecCCC-CcCcCCCCCCCCCCCCCcccccC
Q 046642           72 SNMLSGNIPQQLSELTSLEFFDVSD-NLLTGPIPRGKQFDTFGKSSFDG  119 (207)
Q Consensus        72 ~N~l~~~~p~~~~~l~~L~~l~l~~-N~l~~~~p~~~~~~~l~~~~~~~  119 (207)
                      +|.++ .+|..+..+++|+.|++++ |++.+..+....+..+..+++.+
T Consensus       855 ~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~  902 (1153)
T PLN03210        855 RTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSD  902 (1153)
T ss_pred             CCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCC
Confidence            66666 5677777788888888877 44553222223344444444443

syringae 6; Provisional

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.46  E-value=5.5e-09  Score=91.03  Aligned_cols=110  Identities=26%  Similarity=0.346  Sum_probs=82.2

Q ss_pred             hhcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCccce
Q 046642           12 KLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEF   91 (207)
Q Consensus        12 ~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~   91 (207)
                      .+++.++.|+|++|+++. +. .+..++.|+.|||+.|.+. .+|.--..-.+|+.|.+++|.++..  ..+.++.+|..
T Consensus       184 qll~ale~LnLshNk~~~-v~-~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~L~lrnN~l~tL--~gie~LksL~~  258 (1096)
T KOG1859|consen  184 QLLPALESLNLSHNKFTK-VD-NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCKLQLLNLRNNALTTL--RGIENLKSLYG  258 (1096)
T ss_pred             HHHHHhhhhccchhhhhh-hH-HHHhcccccccccccchhc-cccccchhhhhheeeeecccHHHhh--hhHHhhhhhhc
Confidence            578899999999999984 33 7888999999999999998 6664332334599999999999843  45789999999


Q ss_pred             ecCCCCcCcCC--CCCCCCCCCCCcccccCCCCCCCC
Q 046642           92 FDVSDNLLTGP--IPRGKQFDTFGKSSFDGNPGLCGG  126 (207)
Q Consensus        92 l~l~~N~l~~~--~p~~~~~~~l~~~~~~~n~~~c~~  126 (207)
                      ||++.|-+.+-  +...-.+..+..+.+.|||.-|..
T Consensus       259 LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~p  295 (1096)
T KOG1859|consen  259 LDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCAP  295 (1096)
T ss_pred             cchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccCH
Confidence            99999987741  111112233455678899977753

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.46  E-value=2e-07  Score=53.18  Aligned_cols=36  Identities=36%  Similarity=0.608  Sum_probs=22.0

Q ss_pred             cccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCC
Q 046642           16 LITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQ   52 (207)
Q Consensus        16 ~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~   52 (207)
                      +|++|++++|+|+ .+|+.+.+|++|+.|++++|+++
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            5666666666666 45555666666666666666665

...

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.42  E-value=3.3e-08  Score=69.82  Aligned_cols=87  Identities=28%  Similarity=0.472  Sum_probs=71.0

Q ss_pred             cccEEEccCCCCCCCCchhcc-CCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCccceecC
Q 046642           16 LITAIILSNNSFVGEIPTSIA-NLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEFFDV   94 (207)
Q Consensus        16 ~L~~L~Ls~n~i~~~~p~~~~-~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l~l   94 (207)
                      .|+..+|++|.+. ..|+.|. .++.++.|+|++|.++ .+|..+..++.|+.|+++.|.+. ..|..+..+.++..|+.
T Consensus        54 el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds  130 (177)
T KOG4579|consen   54 ELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDS  130 (177)
T ss_pred             eEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcC
Confidence            4566789999988 5666664 4568889999999998 78888999999999999999998 77888888888888998


Q ss_pred             CCCcCcCCCCCC
Q 046642           95 SDNLLTGPIPRG  106 (207)
Q Consensus        95 ~~N~l~~~~p~~  106 (207)
                      .+|.+. .+|..
T Consensus       131 ~~na~~-eid~d  141 (177)
T KOG4579|consen  131 PENARA-EIDVD  141 (177)
T ss_pred             CCCccc-cCcHH
Confidence            888877 66654

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.35  E-value=4.1e-07  Score=51.89  Aligned_cols=37  Identities=49%  Similarity=0.749  Sum_probs=23.0

Q ss_pred             CCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCC
Q 046642           39 KGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLS   76 (207)
Q Consensus        39 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~   76 (207)
                      ++|++|++++|+++ .+|..++++++|+.|++++|.++
T Consensus         1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            35666777777766 45555666667777777766666

...

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.34  E-value=2.6e-07  Score=77.53  Aligned_cols=102  Identities=34%  Similarity=0.581  Sum_probs=64.1

Q ss_pred             ccccEEEccCCCCCCCCchhccCCC-CCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCccceec
Q 046642           15 NLITAIILSNNSFVGEIPTSIANLK-GLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEFFD   93 (207)
Q Consensus        15 ~~L~~L~Ls~n~i~~~~p~~~~~l~-~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l~   93 (207)
                      +.++.|++.+|.++ .+|.....+. +|+.|+++.|.+. .+|..+..+++|+.|++++|.++ .+|.....++.|+.|+
T Consensus       116 ~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~  192 (394)
T COG4886         116 TNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLD  192 (394)
T ss_pred             cceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhhee
Confidence            45677777777777 5555555553 7777777777776 55556677777777777777777 5555554666777777


Q ss_pred             CCCCcCcCCCCCC-CCCCCCCcccccCC
Q 046642           94 VSDNLLTGPIPRG-KQFDTFGKSSFDGN  120 (207)
Q Consensus        94 l~~N~l~~~~p~~-~~~~~l~~~~~~~n  120 (207)
                      +++|+++ .+|.. .....+..+.+.+|
T Consensus       193 ls~N~i~-~l~~~~~~~~~L~~l~~~~N  219 (394)
T COG4886         193 LSGNKIS-DLPPEIELLSALEELDLSNN  219 (394)
T ss_pred             ccCCccc-cCchhhhhhhhhhhhhhcCC
Confidence            7777776 44443 12223444444444

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.32  E-value=5.2e-08  Score=82.90  Aligned_cols=105  Identities=28%  Similarity=0.333  Sum_probs=81.4

Q ss_pred             hhcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCccce
Q 046642           12 KLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEF   91 (207)
Q Consensus        12 ~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~   91 (207)
                      ..+..|+.|||+.|+++ .+|..+..|+ |+.|-+++|+++ .+|..++.+.+|..||.+.|.+. .+|..++.+.+|+.
T Consensus       118 ~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~  193 (722)
T KOG0532|consen  118 CNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRD  193 (722)
T ss_pred             hhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHH
Confidence            45677888888888887 7777777777 888888888887 78888888888888888888888 67788888888888


Q ss_pred             ecCCCCcCcCCCCCCCCCCCCCcccccCCC
Q 046642           92 FDVSDNLLTGPIPRGKQFDTFGKSSFDGNP  121 (207)
Q Consensus        92 l~l~~N~l~~~~p~~~~~~~l~~~~~~~n~  121 (207)
                      |++..|++....+... --.+..++|+.|.
T Consensus       194 l~vrRn~l~~lp~El~-~LpLi~lDfScNk  222 (722)
T KOG0532|consen  194 LNVRRNHLEDLPEELC-SLPLIRLDFSCNK  222 (722)
T ss_pred             HHHhhhhhhhCCHHHh-CCceeeeecccCc
Confidence            8888888874333333 3346677787775

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.27  E-value=1.7e-07  Score=76.03  Aligned_cols=87  Identities=24%  Similarity=0.321  Sum_probs=52.7

Q ss_pred             cccccEEEccCCCCCCCCchhccCCCC---CCEEECcCCcCCC----CCcccCCCC-CCCCEEecCCCCCCCC----Cch
Q 046642           14 SNLITAIILSNNSFVGEIPTSIANLKG---LRNLDLSNNNLQG----RIPLSLSNL-TAIESMDLSSNMLSGN----IPQ   81 (207)
Q Consensus        14 l~~L~~L~Ls~n~i~~~~p~~~~~l~~---L~~L~Ls~n~l~~----~~p~~~~~l-~~L~~L~ls~N~l~~~----~p~   81 (207)
                      +++|+.|++++|.+.+..+..+..+.+   |+.|++++|++.+    .+...+..+ ++|+.|++++|.+++.    ++.
T Consensus        80 ~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~  159 (319)
T cd00116          80 GCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAK  159 (319)
T ss_pred             cCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHH
Confidence            457777777777776555555555544   7777777777652    122334445 6677777777776632    222


Q ss_pred             hhhcCCccceecCCCCcCc
Q 046642           82 QLSELTSLEFFDVSDNLLT  100 (207)
Q Consensus        82 ~~~~l~~L~~l~l~~N~l~  100 (207)
                      .+..+.+|+.|++++|.++
T Consensus       160 ~~~~~~~L~~L~l~~n~l~  178 (319)
T cd00116         160 ALRANRDLKELNLANNGIG  178 (319)
T ss_pred             HHHhCCCcCEEECcCCCCc
Confidence            3445556777777777665

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.27  E-value=4.3e-07  Score=82.95  Aligned_cols=86  Identities=33%  Similarity=0.463  Sum_probs=46.0

Q ss_pred             hhhhhcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCc
Q 046642            9 EYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTS   88 (207)
Q Consensus         9 ~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~   88 (207)
                      +|+..++.|++|||++|.=-+.+|..++.|-+|++|++++..+. .+|..+++|..|.+|++..+.-...+|.....+.+
T Consensus       565 ~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~  643 (889)
T KOG4658|consen  565 EFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQS  643 (889)
T ss_pred             HHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhccc
Confidence            33445555555555554433455555555555555555555555 55555555555555555555443344444444555


Q ss_pred             cceecCC
Q 046642           89 LEFFDVS   95 (207)
Q Consensus        89 L~~l~l~   95 (207)
                      |++|.+.
T Consensus       644 Lr~L~l~  650 (889)
T KOG4658|consen  644 LRVLRLP  650 (889)
T ss_pred             ccEEEee
Confidence            5555553

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.25  E-value=4.5e-07  Score=76.03  Aligned_cols=81  Identities=38%  Similarity=0.635  Sum_probs=66.7

Q ss_pred             cccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCccceecCC
Q 046642           16 LITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEFFDVS   95 (207)
Q Consensus        16 ~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l~l~   95 (207)
                      +|+.|++++|.+. .+|..+..+++|+.|+++.|++. .+|...+.++.|+.|++++|.++ .+|........|..+.++
T Consensus       141 nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~  217 (394)
T COG4886         141 NLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLS  217 (394)
T ss_pred             hcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhc
Confidence            8899999999988 67677888999999999999998 67766668888999999999998 777766566668888888


Q ss_pred             CCcC
Q 046642           96 DNLL   99 (207)
Q Consensus        96 ~N~l   99 (207)
                      +|.+
T Consensus       218 ~N~~  221 (394)
T COG4886         218 NNSI  221 (394)
T ss_pred             CCcc
Confidence            8853

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.22  E-value=5.2e-07  Score=73.13  Aligned_cols=106  Identities=20%  Similarity=0.311  Sum_probs=63.0

Q ss_pred             cccEEEccCCCCCC----CCchhccCC-CCCCEEECcCCcCCCC----CcccCCCCCCCCEEecCCCCCCCC----Cchh
Q 046642           16 LITAIILSNNSFVG----EIPTSIANL-KGLRNLDLSNNNLQGR----IPLSLSNLTAIESMDLSSNMLSGN----IPQQ   82 (207)
Q Consensus        16 ~L~~L~Ls~n~i~~----~~p~~~~~l-~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~ls~N~l~~~----~p~~   82 (207)
                      +|+.|++++|.+++    .+...+..+ ++|+.|++++|.+++.    ++..+..+.+|+.|++++|.+++.    ++..
T Consensus       109 ~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~  188 (319)
T cd00116         109 SLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEG  188 (319)
T ss_pred             cccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHH
Confidence            37778888877763    222334455 7778888888877632    233455566777788877777642    2223


Q ss_pred             hhcCCccceecCCCCcCcCCCCC-----CCCCCCCCcccccCCC
Q 046642           83 LSELTSLEFFDVSDNLLTGPIPR-----GKQFDTFGKSSFDGNP  121 (207)
Q Consensus        83 ~~~l~~L~~l~l~~N~l~~~~p~-----~~~~~~l~~~~~~~n~  121 (207)
                      +..+++|+.|++++|.+++....     ....+.+..+++.+|+
T Consensus       189 l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~  232 (319)
T cd00116         189 LKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNN  232 (319)
T ss_pred             HHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCc
Confidence            44456777777777776532111     1233456666666654

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.18  E-value=7.6e-07  Score=81.37  Aligned_cols=94  Identities=26%  Similarity=0.366  Sum_probs=79.2

Q ss_pred             hhhcccccEEEccCCC--CCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCc
Q 046642           11 EKLSNLITAIILSNNS--FVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTS   88 (207)
Q Consensus        11 ~~~l~~L~~L~Ls~n~--i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~   88 (207)
                      ....+.|++|-+..|.  +....++.|..++.|++|||++|.--+.+|..+++|-+|++|++++..++ .+|..+.++..
T Consensus       541 ~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~  619 (889)
T KOG4658|consen  541 SSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKK  619 (889)
T ss_pred             CCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHh
Confidence            3344578899898886  55455556888999999999998877799999999999999999999999 89999999999


Q ss_pred             cceecCCCCcCcCCCCC
Q 046642           89 LEFFDVSDNLLTGPIPR  105 (207)
Q Consensus        89 L~~l~l~~N~l~~~~p~  105 (207)
                      |.+||+..+.....+|.
T Consensus       620 L~~Lnl~~~~~l~~~~~  636 (889)
T KOG4658|consen  620 LIYLNLEVTGRLESIPG  636 (889)
T ss_pred             hheeccccccccccccc
Confidence            99999998865444443

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.07  E-value=4.1e-07  Score=64.37  Aligned_cols=95  Identities=20%  Similarity=0.293  Sum_probs=74.0

Q ss_pred             hhhhhcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCc
Q 046642            9 EYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTS   88 (207)
Q Consensus         9 ~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~   88 (207)
                      .|...++.++.|+|++|.|+ .+|.++..++.|+.|+++.|.+. ..|..+..|.+|..|+..+|.+. .+|-.+-.-..
T Consensus        71 kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~dl~~s~~  147 (177)
T KOG4579|consen   71 KFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVDLFYSSL  147 (177)
T ss_pred             HHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHHHhcccc
Confidence            33344557888999999999 89999999999999999999998 78888888999999999999998 66654333233


Q ss_pred             cceecCCCCcCcCCCCCC
Q 046642           89 LEFFDVSDNLLTGPIPRG  106 (207)
Q Consensus        89 L~~l~l~~N~l~~~~p~~  106 (207)
                      .-..++.++.+.+..+..
T Consensus       148 ~al~~lgnepl~~~~~~k  165 (177)
T KOG4579|consen  148 PALIKLGNEPLGDETKKK  165 (177)
T ss_pred             HHHHHhcCCcccccCccc
Confidence            344555666676655543

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.00  E-value=2.2e-06  Score=72.49  Aligned_cols=85  Identities=32%  Similarity=0.427  Sum_probs=57.0

Q ss_pred             hhcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCccce
Q 046642           12 KLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEF   91 (207)
Q Consensus        12 ~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~   91 (207)
                      ..+.+++.|++.+|.|. .+...+..+++|+.|++++|.|+...  .+..+..|+.|++++|.|+ .+ ..+..+..|+.
T Consensus        92 ~~~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l~~N~i~-~~-~~~~~l~~L~~  166 (414)
T KOG0531|consen   92 SKLKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELNLSGNLIS-DI-SGLESLKSLKL  166 (414)
T ss_pred             ccccceeeeeccccchh-hcccchhhhhcchheecccccccccc--chhhccchhhheeccCcch-hc-cCCccchhhhc
Confidence            34566777778888877 34433566777888888888877332  3456666777777777777 33 23455777777


Q ss_pred             ecCCCCcCcC
Q 046642           92 FDVSDNLLTG  101 (207)
Q Consensus        92 l~l~~N~l~~  101 (207)
                      +++++|.+..
T Consensus       167 l~l~~n~i~~  176 (414)
T KOG0531|consen  167 LDLSYNRIVD  176 (414)
T ss_pred             ccCCcchhhh
Confidence            7777777763

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=97.89  E-value=4.7e-06  Score=70.57  Aligned_cols=103  Identities=27%  Similarity=0.347  Sum_probs=78.4

Q ss_pred             hcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCcccee
Q 046642           13 LSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEFF   92 (207)
Q Consensus        13 ~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l   92 (207)
                      .+..+..+.+..|.|. ..-..+..+++|+.|++..|.+. .+...+..+++|++|++++|.|+...  .+..++.|+.|
T Consensus        70 ~l~~l~~l~l~~n~i~-~~~~~l~~~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L  145 (414)
T KOG0531|consen   70 SLTSLKELNLRQNLIA-KILNHLSKLKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKEL  145 (414)
T ss_pred             HhHhHHhhccchhhhh-hhhcccccccceeeeeccccchh-hcccchhhhhcchheecccccccccc--chhhccchhhh
Confidence            4667777888999988 44455788999999999999998 45444788999999999999999543  36778889999


Q ss_pred             cCCCCcCcCCCCCCCCCCCCCcccccCC
Q 046642           93 DVSDNLLTGPIPRGKQFDTFGKSSFDGN  120 (207)
Q Consensus        93 ~l~~N~l~~~~p~~~~~~~l~~~~~~~n  120 (207)
                      ++++|.++ .+.....+..+..+++++|
T Consensus       146 ~l~~N~i~-~~~~~~~l~~L~~l~l~~n  172 (414)
T KOG0531|consen  146 NLSGNLIS-DISGLESLKSLKLLDLSYN  172 (414)
T ss_pred             eeccCcch-hccCCccchhhhcccCCcc
Confidence            99999998 4444333444455555554

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.89  E-value=2.3e-05  Score=59.04  Aligned_cols=100  Identities=18%  Similarity=0.273  Sum_probs=59.5

Q ss_pred             cEEEccCCCCCCCCchhcc-CCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCccceecCCC
Q 046642           18 TAIILSNNSFVGEIPTSIA-NLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEFFDVSD   96 (207)
Q Consensus        18 ~~L~Ls~n~i~~~~p~~~~-~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l~l~~   96 (207)
                      +.++|.+.++. .+.. ++ .+.+...+||+.|.+. .+ +.|..++.|..|.+++|.|+...|..-.-+++|..|.+.+
T Consensus        22 ~e~~LR~lkip-~ien-lg~~~d~~d~iDLtdNdl~-~l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~Ltn   97 (233)
T KOG1644|consen   22 RELDLRGLKIP-VIEN-LGATLDQFDAIDLTDNDLR-KL-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTN   97 (233)
T ss_pred             ccccccccccc-chhh-ccccccccceecccccchh-hc-ccCCCccccceEEecCCcceeeccchhhhccccceEEecC
Confidence            44566666554 2111 22 2345667777777775 22 3566777777777777777765555545556677777777


Q ss_pred             CcCcC--CCCCCCCCCCCCcccccCCC
Q 046642           97 NLLTG--PIPRGKQFDTFGKSSFDGNP  121 (207)
Q Consensus        97 N~l~~--~~p~~~~~~~l~~~~~~~n~  121 (207)
                      |.+..  .+.....++.+..+.+-|||
T Consensus        98 Nsi~~l~dl~pLa~~p~L~~Ltll~Np  124 (233)
T KOG1644|consen   98 NSIQELGDLDPLASCPKLEYLTLLGNP  124 (233)
T ss_pred             cchhhhhhcchhccCCccceeeecCCc
Confidence            76652  23333445566666666765

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=97.86  E-value=3.1e-06  Score=70.19  Aligned_cols=115  Identities=25%  Similarity=0.229  Sum_probs=66.3

Q ss_pred             hhhhhcccccEEEccCCCCCC--CCchhccCCCCCCEEECcCCcCCCCCcc-cCCCCCCCCEEecCCCCCCCCCc-hhhh
Q 046642            9 EYEKLSNLITAIILSNNSFVG--EIPTSIANLKGLRNLDLSNNNLQGRIPL-SLSNLTAIESMDLSSNMLSGNIP-QQLS   84 (207)
Q Consensus         9 ~~~~~l~~L~~L~Ls~n~i~~--~~p~~~~~l~~L~~L~Ls~n~l~~~~p~-~~~~l~~L~~L~ls~N~l~~~~p-~~~~   84 (207)
                      .....+++++.|||++|-+..  .+-.....|++|+.|+|+.|++.-.... .-..+++|+.|.++.+.++...- ....
T Consensus       140 ~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~  219 (505)
T KOG3207|consen  140 EYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILL  219 (505)
T ss_pred             hhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHH
Confidence            355678888888888888763  2223345788888888888887622211 12345677777777777763221 1234


Q ss_pred             cCCccceecCCCCc-CcCCCCCCCCCCCCCcccccCCCCC
Q 046642           85 ELTSLEFFDVSDNL-LTGPIPRGKQFDTFGKSSFDGNPGL  123 (207)
Q Consensus        85 ~l~~L~~l~l~~N~-l~~~~p~~~~~~~l~~~~~~~n~~~  123 (207)
                      .+++|..|++..|. +.-.--....+..+..+++++|+.+
T Consensus       220 ~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li  259 (505)
T KOG3207|consen  220 TFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLI  259 (505)
T ss_pred             hCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccc
Confidence            45666666666663 2111111223344555555555543

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.70  E-value=1.1e-06  Score=77.11  Aligned_cols=101  Identities=25%  Similarity=0.349  Sum_probs=78.0

Q ss_pred             ccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCccceecC
Q 046642           15 NLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEFFDV   94 (207)
Q Consensus        15 ~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l~l   94 (207)
                      ..|...+.++|.+. .+..++.-++.|+.|||++|+++ .. +.+..++.|++|||+.|.+. .+|..-..-..|..|++
T Consensus       164 n~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~-~v-~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~L~l  239 (1096)
T KOG1859|consen  164 NKLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFT-KV-DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCKLQLLNL  239 (1096)
T ss_pred             hhHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhh-hh-HHHHhcccccccccccchhc-cccccchhhhhheeeee
Confidence            44666788899998 77888888999999999999998 33 37889999999999999998 67754333345999999


Q ss_pred             CCCcCcCCCCCCCCCCCCCcccccCC
Q 046642           95 SDNLLTGPIPRGKQFDTFGKSSFDGN  120 (207)
Q Consensus        95 ~~N~l~~~~p~~~~~~~l~~~~~~~n  120 (207)
                      ++|.++ .+-...++..+..++++.|
T Consensus       240 rnN~l~-tL~gie~LksL~~LDlsyN  264 (1096)
T KOG1859|consen  240 RNNALT-TLRGIENLKSLYGLDLSYN  264 (1096)
T ss_pred             cccHHH-hhhhHHhhhhhhccchhHh
Confidence            999888 3333345666666776665

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.69  E-value=4.5e-05  Score=57.44  Aligned_cols=85  Identities=21%  Similarity=0.276  Sum_probs=67.8

Q ss_pred             hcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCch--hhhcCCccc
Q 046642           13 LSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQ--QLSELTSLE   90 (207)
Q Consensus        13 ~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~--~~~~l~~L~   90 (207)
                      .+.+...+||++|.+-  .-+.|..++.|.+|.|.+|+|+..-|.--.-+++|..|.+.+|.|. .+.+  -+..+++|+
T Consensus        40 ~~d~~d~iDLtdNdl~--~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~-~l~dl~pLa~~p~L~  116 (233)
T KOG1644|consen   40 TLDQFDAIDLTDNDLR--KLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQ-ELGDLDPLASCPKLE  116 (233)
T ss_pred             cccccceecccccchh--hcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchh-hhhhcchhccCCccc
Confidence            4557788999999985  3345788999999999999999666655556778999999999986 3322  366788999


Q ss_pred             eecCCCCcCc
Q 046642           91 FFDVSDNLLT  100 (207)
Q Consensus        91 ~l~l~~N~l~  100 (207)
                      +|.+-+|+.+
T Consensus       117 ~Ltll~Npv~  126 (233)
T KOG1644|consen  117 YLTLLGNPVE  126 (233)
T ss_pred             eeeecCCchh
Confidence            9999999876

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=97.64  E-value=1.7e-05  Score=65.98  Aligned_cols=87  Identities=26%  Similarity=0.374  Sum_probs=45.3

Q ss_pred             hcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCc--ccCCCCCCCCEEecCCCCCCCC-Cchh-----hh
Q 046642           13 LSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIP--LSLSNLTAIESMDLSSNMLSGN-IPQQ-----LS   84 (207)
Q Consensus        13 ~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p--~~~~~l~~L~~L~ls~N~l~~~-~p~~-----~~   84 (207)
                      ..++|..|+|.+|..-.........+..|+.|||++|.+- ..+  ...+.++.|..|+++.+.+... .|+.     ..
T Consensus       220 ~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li-~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~  298 (505)
T KOG3207|consen  220 TFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLI-DFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTH  298 (505)
T ss_pred             hCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccc-ccccccccccccchhhhhccccCcchhcCCCccchhhhc
Confidence            3455566666666322222233334556666666666654 233  3345566666666666665421 2221     23


Q ss_pred             cCCccceecCCCCcCc
Q 046642           85 ELTSLEFFDVSDNLLT  100 (207)
Q Consensus        85 ~l~~L~~l~l~~N~l~  100 (207)
                      .+++|++|++..|++.
T Consensus       299 ~f~kL~~L~i~~N~I~  314 (505)
T KOG3207|consen  299 TFPKLEYLNISENNIR  314 (505)
T ss_pred             ccccceeeecccCccc
Confidence            4566666777666664

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.25  E-value=0.00017  Score=57.61  Aligned_cols=97  Identities=24%  Similarity=0.273  Sum_probs=68.7

Q ss_pred             ccchhhhhhhcccccEEEccCCCCCC--CCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCc-
Q 046642            4 KGTELEYEKLSNLITAIILSNNSFVG--EIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIP-   80 (207)
Q Consensus         4 ~~~~~~~~~~l~~L~~L~Ls~n~i~~--~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p-   80 (207)
                      .|-...+.+..+.++.|||.+|.|+.  .+-.-+.+||.|+.|+|+.|.+...+-.---.+.+|+.|-|.+..+...-. 
T Consensus        60 ~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~  139 (418)
T KOG2982|consen   60 EGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQST  139 (418)
T ss_pred             chhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhh
Confidence            34445667777888999999999983  333345689999999999999975443222356688888888877754322 


Q ss_pred             hhhhcCCccceecCCCCcCc
Q 046642           81 QQLSELTSLEFFDVSDNLLT  100 (207)
Q Consensus        81 ~~~~~l~~L~~l~l~~N~l~  100 (207)
                      ..+..++.++.|.++.|.+.
T Consensus       140 s~l~~lP~vtelHmS~N~~r  159 (418)
T KOG2982|consen  140 SSLDDLPKVTELHMSDNSLR  159 (418)
T ss_pred             hhhhcchhhhhhhhccchhh
Confidence            34566788888888888544

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.04  E-value=0.00048  Score=53.78  Aligned_cols=63  Identities=25%  Similarity=0.431  Sum_probs=31.0

Q ss_pred             cCCCCCCEEECcCC--cCCCCCcccCCCCCCCCEEecCCCCCCCCCchh---hhcCCccceecCCCCcCc
Q 046642           36 ANLKGLRNLDLSNN--NLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQ---LSELTSLEFFDVSDNLLT  100 (207)
Q Consensus        36 ~~l~~L~~L~Ls~n--~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~---~~~l~~L~~l~l~~N~l~  100 (207)
                      ..|++|+.|.++.|  ++.+.++.....+++|+++++++|++. . ++.   +..+.+|..|++.+|..+
T Consensus        62 P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~-~-lstl~pl~~l~nL~~Ldl~n~~~~  129 (260)
T KOG2739|consen   62 PKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK-D-LSTLRPLKELENLKSLDLFNCSVT  129 (260)
T ss_pred             CCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc-c-ccccchhhhhcchhhhhcccCCcc
Confidence            34555556666655  444444444444455666666666554 1 121   233444555555555444

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.97  E-value=0.00071  Score=52.83  Aligned_cols=87  Identities=16%  Similarity=0.268  Sum_probs=61.8

Q ss_pred             CchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCC--CCCCCCchhhhcCCccceecCCCCcCcC--CCCCC
Q 046642           31 IPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSN--MLSGNIPQQLSELTSLEFFDVSDNLLTG--PIPRG  106 (207)
Q Consensus        31 ~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N--~l~~~~p~~~~~l~~L~~l~l~~N~l~~--~~p~~  106 (207)
                      +..-...+..|+.|.+.+..++ .+ ..+..|++|+.|.+|.|  .+.+.++.....+++|+++++++|++.-  .++..
T Consensus        35 ~~gl~d~~~~le~ls~~n~glt-t~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl  112 (260)
T KOG2739|consen   35 LGGLTDEFVELELLSVINVGLT-TL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPL  112 (260)
T ss_pred             cccccccccchhhhhhhcccee-ec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchh
Confidence            4445556677888888888876 22 35778899999999999  7776676667777999999999999872  33333


Q ss_pred             CCCCCCCcccccC
Q 046642          107 KQFDTFGKSSFDG  119 (207)
Q Consensus       107 ~~~~~l~~~~~~~  119 (207)
                      ..+..+..+++..
T Consensus       113 ~~l~nL~~Ldl~n  125 (260)
T KOG2739|consen  113 KELENLKSLDLFN  125 (260)
T ss_pred             hhhcchhhhhccc
Confidence            3444454555443

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=96.71  E-value=0.0012  Score=59.37  Aligned_cols=90  Identities=18%  Similarity=0.313  Sum_probs=54.1

Q ss_pred             hhhhhhcccccEEEccCCCCCC-CCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCC-CCchhhhc
Q 046642            8 LEYEKLSNLITAIILSNNSFVG-EIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSG-NIPQQLSE   85 (207)
Q Consensus         8 ~~~~~~l~~L~~L~Ls~n~i~~-~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~-~~p~~~~~   85 (207)
                      ..+...+++|+.|.+++-.+.. ..-....++++|..||+|+.+++ .+ ..++.|++|+.|.+.+=.+.. ..-..+.+
T Consensus       141 ~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~-nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~  218 (699)
T KOG3665|consen  141 KKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNIS-NL-SGISRLKNLQVLSMRNLEFESYQDLIDLFN  218 (699)
T ss_pred             HHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCcc-Cc-HHHhccccHHHHhccCCCCCchhhHHHHhc
Confidence            4566778888888887766542 22334557788888888888876 33 455666666666555544431 11123445


Q ss_pred             CCccceecCCCCcC
Q 046642           86 LTSLEFFDVSDNLL   99 (207)
Q Consensus        86 l~~L~~l~l~~N~l   99 (207)
                      |++|+.||+|....
T Consensus       219 L~~L~vLDIS~~~~  232 (699)
T KOG3665|consen  219 LKKLRVLDISRDKN  232 (699)
T ss_pred             ccCCCeeecccccc
Confidence            66666666665443

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.71  E-value=0.00054  Score=32.71  Aligned_cols=19  Identities=32%  Similarity=0.534  Sum_probs=10.2

Q ss_pred             ccEEEccCCCCCCCCchhcc
Q 046642           17 ITAIILSNNSFVGEIPTSIA   36 (207)
Q Consensus        17 L~~L~Ls~n~i~~~~p~~~~   36 (207)
                      |++||+++|+|+ .+|..|+
T Consensus         2 L~~Ldls~n~l~-~ip~~~~   20 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPSSFS   20 (22)
T ss_dssp             ESEEEETSSEES-EEGTTTT
T ss_pred             ccEEECCCCcCE-eCChhhc
Confidence            455555555555 4554443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=96.59  E-value=0.0016  Score=58.58  Aligned_cols=61  Identities=20%  Similarity=0.286  Sum_probs=29.0

Q ss_pred             cccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCC-CCcccCCCCCCCCEEecCCCCCC
Q 046642           14 SNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQG-RIPLSLSNLTAIESMDLSSNMLS   76 (207)
Q Consensus        14 l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~-~~p~~~~~l~~L~~L~ls~N~l~   76 (207)
                      +++|..||+|+.+++..  ..++.|++|+.|.+.+=.+.. ..-..+.+|++|++||+|.....
T Consensus       172 FpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~  233 (699)
T KOG3665|consen  172 FPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNN  233 (699)
T ss_pred             cCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccc
Confidence            34555555555555522  344555555555554444431 11123345555555555554443

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=96.42  E-value=0.001  Score=54.12  Aligned_cols=112  Identities=19%  Similarity=0.242  Sum_probs=70.1

Q ss_pred             hhhcccccEEEccCCCCCCC----CchhccCCCCCCEEECcCCcCCCC----CcccCCCCCCCCEEecCCCCCCCCCchh
Q 046642           11 EKLSNLITAIILSNNSFVGE----IPTSIANLKGLRNLDLSNNNLQGR----IPLSLSNLTAIESMDLSSNMLSGNIPQQ   82 (207)
Q Consensus        11 ~~~l~~L~~L~Ls~n~i~~~----~p~~~~~l~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~ls~N~l~~~~p~~   82 (207)
                      +...+.|+.+.++.|.|...    +-..|...++|+.|||..|-++..    +...++.+++|+.|+++++.+...--..
T Consensus       181 ~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a  260 (382)
T KOG1909|consen  181 FQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIA  260 (382)
T ss_pred             HHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHH
Confidence            34457788888888887521    223466778888888888887632    2345666778888888888876432222


Q ss_pred             h-----hcCCccceecCCCCcCcCCC-----CCCCCCCCCCcccccCCCC
Q 046642           83 L-----SELTSLEFFDVSDNLLTGPI-----PRGKQFDTFGKSSFDGNPG  122 (207)
Q Consensus        83 ~-----~~l~~L~~l~l~~N~l~~~~-----p~~~~~~~l~~~~~~~n~~  122 (207)
                      +     ...++|..+.+.+|.++..-     -.....+.+..+.+++|..
T Consensus       261 ~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  261 FVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             HHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence            2     23577888888888776310     0001234566667777754

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.40  E-value=0.00099  Score=31.78  Aligned_cols=19  Identities=63%  Similarity=0.800  Sum_probs=9.8

Q ss_pred             CCEEECcCCcCCCCCcccCC
Q 046642           41 LRNLDLSNNNLQGRIPLSLS   60 (207)
Q Consensus        41 L~~L~Ls~n~l~~~~p~~~~   60 (207)
                      |++||+++|+++ .+|..|+
T Consensus         2 L~~Ldls~n~l~-~ip~~~~   20 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPSSFS   20 (22)
T ss_dssp             ESEEEETSSEES-EEGTTTT
T ss_pred             ccEEECCCCcCE-eCChhhc
Confidence            455555555555 4444443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.32  E-value=0.0004  Score=55.03  Aligned_cols=84  Identities=24%  Similarity=0.321  Sum_probs=50.4

Q ss_pred             hhhhhhhcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCc--ccCCCCCCCCEEecCCCCCCCCCchh--
Q 046642            7 ELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIP--LSLSNLTAIESMDLSSNMLSGNIPQQ--   82 (207)
Q Consensus         7 ~~~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p--~~~~~l~~L~~L~ls~N~l~~~~p~~--   82 (207)
                      ++.+-..++.|++|.||-|.|+..-|  +..++.|+.|+|..|.|. .+.  ..+.++++|+.|.|..|...|.-+..  
T Consensus        33 DIsic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~-sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR  109 (388)
T KOG2123|consen   33 DISICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIE-SLDELEYLKNLPSLRTLWLDENPCCGEAGQNYR  109 (388)
T ss_pred             HHHHHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccc-cHHHHHHHhcCchhhhHhhccCCcccccchhHH
Confidence            34444556667777777777764333  456667777777777765 222  23566777777777777766554432  


Q ss_pred             ---hhcCCccceec
Q 046642           83 ---LSELTSLEFFD   93 (207)
Q Consensus        83 ---~~~l~~L~~l~   93 (207)
                         +.-+++|+.||
T Consensus       110 ~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen  110 RKVLRVLPNLKKLD  123 (388)
T ss_pred             HHHHHHcccchhcc
Confidence               33455665554

>PRK15386 type III secretion protein GogB; Provisional

Probab=96.32  E-value=0.0096  Score=50.19  Aligned_cols=54  Identities=13%  Similarity=0.274  Sum_probs=27.5

Q ss_pred             cccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCC
Q 046642           14 SNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSN   73 (207)
Q Consensus        14 l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N   73 (207)
                      +++++.|++++|.++ .+|. +  ..+|+.|.++++.--..+|..+.  .+|+.|++++|
T Consensus        51 ~~~l~~L~Is~c~L~-sLP~-L--P~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~C  104 (426)
T PRK15386         51 ARASGRLYIKDCDIE-SLPV-L--PNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHC  104 (426)
T ss_pred             hcCCCEEEeCCCCCc-ccCC-C--CCCCcEEEccCCCCcccCCchhh--hhhhheEccCc
Confidence            466777777777766 4452 1  23466666655322124443331  34555555544

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=95.70  E-value=0.00015  Score=55.95  Aligned_cols=83  Identities=19%  Similarity=0.198  Sum_probs=54.7

Q ss_pred             ccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCccceecC
Q 046642           15 NLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEFFDV   94 (207)
Q Consensus        15 ~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l~l   94 (207)
                      ...+.||++.|.+- -.-..|+.++.|..||++.|.+. ..|..++.+..+..+++..|.++ ..|.+++..+.++++++
T Consensus        42 kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~  118 (326)
T KOG0473|consen   42 KRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQ  118 (326)
T ss_pred             ceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhh
Confidence            34556677766655 44455566666677777777766 66666666666677777777766 66666777777777777


Q ss_pred             CCCcCc
Q 046642           95 SDNLLT  100 (207)
Q Consensus        95 ~~N~l~  100 (207)
                      -.|.|.
T Consensus       119 k~~~~~  124 (326)
T KOG0473|consen  119 KKTEFF  124 (326)
T ss_pred             ccCcch
Confidence            666554

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=95.25  E-value=0.014  Score=47.72  Aligned_cols=88  Identities=19%  Similarity=0.281  Sum_probs=56.5

Q ss_pred             hcccccEEEccCCCCCCC----CchhccCCCCCCEEECcCCcCCCC----CcccCCCCCCCCEEecCCCCCCCCC----c
Q 046642           13 LSNLITAIILSNNSFVGE----IPTSIANLKGLRNLDLSNNNLQGR----IPLSLSNLTAIESMDLSSNMLSGNI----P   80 (207)
Q Consensus        13 ~l~~L~~L~Ls~n~i~~~----~p~~~~~l~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~ls~N~l~~~~----p   80 (207)
                      ..+.|++++...|.+...    +...|...+.|+.+.++.|.|...    +-..+..+++|+.|||.+|.++..-    .
T Consensus       155 ~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~La  234 (382)
T KOG1909|consen  155 SKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALA  234 (382)
T ss_pred             CCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHH
Confidence            355677888888777532    222355667788888888877511    1234566778888888888776322    2


Q ss_pred             hhhhcCCccceecCCCCcCc
Q 046642           81 QQLSELTSLEFFDVSDNLLT  100 (207)
Q Consensus        81 ~~~~~l~~L~~l~l~~N~l~  100 (207)
                      ..+..++.|+.++++++.+.
T Consensus       235 kaL~s~~~L~El~l~dcll~  254 (382)
T KOG1909|consen  235 KALSSWPHLRELNLGDCLLE  254 (382)
T ss_pred             HHhcccchheeecccccccc
Confidence            24556677788888877665

>PRK15386 type III secretion protein GogB; Provisional

Probab=95.09  E-value=0.053  Score=45.84  Aligned_cols=70  Identities=24%  Similarity=0.500  Sum_probs=46.1

Q ss_pred             hhhcccccEEEccC-CCCCCCCchhccCCCCCCEEECcCC-cCCCCCcccCCCCCCCCEEecCCCCCC--CCCchhhhcC
Q 046642           11 EKLSNLITAIILSN-NSFVGEIPTSIANLKGLRNLDLSNN-NLQGRIPLSLSNLTAIESMDLSSNMLS--GNIPQQLSEL   86 (207)
Q Consensus        11 ~~~l~~L~~L~Ls~-n~i~~~~p~~~~~l~~L~~L~Ls~n-~l~~~~p~~~~~l~~L~~L~ls~N~l~--~~~p~~~~~l   86 (207)
                      +.++.+|+.|.+++ +.++ .+|+.+  .++|+.|++++| .+. .+|.      +|+.|+++.|.+.  +.+|.     
T Consensus        68 P~LP~sLtsL~Lsnc~nLt-sLP~~L--P~nLe~L~Ls~Cs~L~-sLP~------sLe~L~L~~n~~~~L~~LPs-----  132 (426)
T PRK15386         68 PVLPNELTEITIENCNNLT-TLPGSI--PEGLEKLTVCHCPEIS-GLPE------SVRSLEIKGSATDSIKNVPN-----  132 (426)
T ss_pred             CCCCCCCcEEEccCCCCcc-cCCchh--hhhhhheEccCccccc-cccc------ccceEEeCCCCCcccccCcc-----
Confidence            36788899999987 4554 667655  358999999998 554 5554      4677777776643  13443     


Q ss_pred             CccceecCCC
Q 046642           87 TSLEFFDVSD   96 (207)
Q Consensus        87 ~~L~~l~l~~   96 (207)
                       +|+.|.+.+
T Consensus       133 -sLk~L~I~~  141 (426)
T PRK15386        133 -GLTSLSINS  141 (426)
T ss_pred             -hHhheeccc
Confidence             355565543

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=94.90  E-value=0.015  Score=25.73  Aligned_cols=11  Identities=45%  Similarity=0.770  Sum_probs=3.2

Q ss_pred             CCEEecCCCCC
Q 046642           65 IESMDLSSNML   75 (207)
Q Consensus        65 L~~L~ls~N~l   75 (207)
                      |+.|++++|.+
T Consensus         3 L~~L~l~~n~L   13 (17)
T PF13504_consen    3 LRTLDLSNNRL   13 (17)
T ss_dssp             -SEEEETSS--
T ss_pred             cCEEECCCCCC
Confidence            33344444433

...

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.48  E-value=0.0034  Score=49.94  Aligned_cols=85  Identities=18%  Similarity=0.177  Sum_probs=67.4

Q ss_pred             cccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCch--hhhcCCccce
Q 046642           14 SNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQ--QLSELTSLEF   91 (207)
Q Consensus        14 l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~--~~~~l~~L~~   91 (207)
                      +.+.+.|+.-++.|+.+  .....|+.|+.|.||-|+|+..-  .+..+++|++|+|..|.|. .+-+  -+.++++|+.
T Consensus        18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~-sldEL~YLknlpsLr~   92 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIE-SLDELEYLKNLPSLRT   92 (388)
T ss_pred             HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccc-cHHHHHHHhcCchhhh
Confidence            55677888889888732  23467999999999999998443  4778899999999999998 4433  3678999999


Q ss_pred             ecCCCCcCcCCC
Q 046642           92 FDVSDNLLTGPI  103 (207)
Q Consensus        92 l~l~~N~l~~~~  103 (207)
                      |-|..|+-.|.-
T Consensus        93 LWL~ENPCc~~a  104 (388)
T KOG2123|consen   93 LWLDENPCCGEA  104 (388)
T ss_pred             HhhccCCccccc
Confidence            999999876643

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=94.02  E-value=0.0014  Score=50.75  Aligned_cols=87  Identities=23%  Similarity=0.197  Sum_probs=69.4

Q ss_pred             hhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCccceecCCCCcCcCCCCCCCCCCCC
Q 046642           33 TSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEFFDVSDNLLTGPIPRGKQFDTF  112 (207)
Q Consensus        33 ~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~~~~~l  112 (207)
                      .++..+..-+.||++.|++. .+-..|+.++.|..|+++.|.+. ..|..++....+..+++..|..+...-...+.+..
T Consensus        36 ~ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~  113 (326)
T KOG0473|consen   36 REIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHP  113 (326)
T ss_pred             hhhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchhhCCccccccCCc
Confidence            34667788999999999987 66778888999999999999999 88999999999999999999888433333455555


Q ss_pred             CcccccCCC
Q 046642          113 GKSSFDGNP  121 (207)
Q Consensus       113 ~~~~~~~n~  121 (207)
                      ...+..+|+
T Consensus       114 k~~e~k~~~  122 (326)
T KOG0473|consen  114 KKNEQKKTE  122 (326)
T ss_pred             chhhhccCc
Confidence            556666665

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=93.49  E-value=0.074  Score=26.09  Aligned_cols=13  Identities=31%  Similarity=0.350  Sum_probs=6.5

Q ss_pred             cccEEEccCCCCC
Q 046642           16 LITAIILSNNSFV   28 (207)
Q Consensus        16 ~L~~L~Ls~n~i~   28 (207)
                      +|+.|+|++|.|+
T Consensus         3 ~L~~L~L~~N~l~   15 (26)
T smart00369        3 NLRELDLSNNQLS   15 (26)
T ss_pred             CCCEEECCCCcCC
Confidence            4445555555554

>smart00370 LRR Leucine-rich repeats, outliers

Probab=93.49  E-value=0.074  Score=26.09  Aligned_cols=13  Identities=31%  Similarity=0.350  Sum_probs=6.5

Q ss_pred             cccEEEccCCCCC
Q 046642           16 LITAIILSNNSFV   28 (207)
Q Consensus        16 ~L~~L~Ls~n~i~   28 (207)
                      +|+.|+|++|.|+
T Consensus         3 ~L~~L~L~~N~l~   15 (26)
T smart00370        3 NLRELDLSNNQLS   15 (26)
T ss_pred             CCCEEECCCCcCC
Confidence            4445555555554

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=93.00  E-value=0.15  Score=35.27  Aligned_cols=83  Identities=20%  Similarity=0.250  Sum_probs=46.6

Q ss_pred             hhcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCccce
Q 046642           12 KLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEF   91 (207)
Q Consensus        12 ~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~   91 (207)
                      .-..+|+.+.+.. .++..-...|.++++|+.+.+..+ +...-...|....+|+.+.+.+ .+.......|..+.+|+.
T Consensus         9 ~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~   85 (129)
T PF13306_consen    9 YNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKN   85 (129)
T ss_dssp             TT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECE
T ss_pred             hCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccc
Confidence            4456777787764 455455666777878888888775 5534445677777888888865 443233445666788888


Q ss_pred             ecCCCC
Q 046642           92 FDVSDN   97 (207)
Q Consensus        92 l~l~~N   97 (207)
                      +++..+
T Consensus        86 i~~~~~   91 (129)
T PF13306_consen   86 IDIPSN   91 (129)
T ss_dssp             EEETTT
T ss_pred             cccCcc
Confidence            887654

>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]

Probab=92.99  E-value=0.13  Score=28.29  Aligned_cols=16  Identities=31%  Similarity=0.272  Sum_probs=5.9

Q ss_pred             hHHHHHHHHHHHhhcc
Q 046642          163 SGTIIGVILGHIFSTR  178 (207)
Q Consensus       163 ~~~~~~~~~~~~~~~~  178 (207)
                      +++++++++++++++|
T Consensus        21 V~vI~~vl~~~l~~~~   36 (40)
T PF08693_consen   21 VGVIIIVLGAFLFFWY   36 (40)
T ss_pred             hHHHHHHHHHHhheEE
Confidence            3333333333333333

This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].

>smart00370 LRR Leucine-rich repeats, outliers

Probab=92.96  E-value=0.11  Score=25.46  Aligned_cols=14  Identities=43%  Similarity=0.638  Sum_probs=6.8

Q ss_pred             CCCCEEecCCCCCC
Q 046642           63 TAIESMDLSSNMLS   76 (207)
Q Consensus        63 ~~L~~L~ls~N~l~   76 (207)
                      ++|+.|++++|.|+
T Consensus         2 ~~L~~L~L~~N~l~   15 (26)
T smart00370        2 PNLRELDLSNNQLS   15 (26)
T ss_pred             CCCCEEECCCCcCC
Confidence            34445555555544

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=92.96  E-value=0.11  Score=25.46  Aligned_cols=14  Identities=43%  Similarity=0.638  Sum_probs=6.8

Q ss_pred             CCCCEEecCCCCCC
Q 046642           63 TAIESMDLSSNMLS   76 (207)
Q Consensus        63 ~~L~~L~ls~N~l~   76 (207)
                      ++|+.|++++|.|+
T Consensus         2 ~~L~~L~L~~N~l~   15 (26)
T smart00369        2 PNLRELDLSNNQLS   15 (26)
T ss_pred             CCCCEEECCCCcCC
Confidence            34445555555544

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.68  E-value=0.092  Score=42.45  Aligned_cols=64  Identities=30%  Similarity=0.327  Sum_probs=48.0

Q ss_pred             hhcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCc-ccCCCCCCCCEEecCCCCC
Q 046642           12 KLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIP-LSLSNLTAIESMDLSSNML   75 (207)
Q Consensus        12 ~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~L~ls~N~l   75 (207)
                      +.++.|+.|+++.|.+...+...-..+.+|+.|-|.+..+.+... ..+..++.++.|++|.|.+
T Consensus        94 e~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~  158 (418)
T KOG2982|consen   94 EQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSL  158 (418)
T ss_pred             hcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchh
Confidence            456788999999999984432221356789999999998876544 4457788999999999844

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=92.38  E-value=0.16  Score=35.16  Aligned_cols=82  Identities=21%  Similarity=0.268  Sum_probs=50.3

Q ss_pred             hhhcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCccc
Q 046642           11 EKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLE   90 (207)
Q Consensus        11 ~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~   90 (207)
                      +...++|+.+.+.++ +...-...|.+.+.|+.+.+.. .+.......|...++|+.+++..+ +.......|.+. .|+
T Consensus        31 F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~  106 (129)
T PF13306_consen   31 FSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN-ITEIGSSSFSNC-NLK  106 (129)
T ss_dssp             TTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT--BEEHTTTTTT--T--
T ss_pred             ccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccccCcc-ccEEchhhhcCC-Cce
Confidence            456677999999886 6655566788888899999976 444344567788999999999876 553334456665 788


Q ss_pred             eecCCC
Q 046642           91 FFDVSD   96 (207)
Q Consensus        91 ~l~l~~   96 (207)
                      .+.+..
T Consensus       107 ~i~~~~  112 (129)
T PF13306_consen  107 EINIPS  112 (129)
T ss_dssp             EEE-TT
T ss_pred             EEEECC
Confidence            877765

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=92.10  E-value=0.073  Score=42.49  Aligned_cols=89  Identities=24%  Similarity=0.347  Sum_probs=57.7

Q ss_pred             hhcccccEEEccCCCCCCCCch----hccCCCCCCEEECcCCcCC---CCCc-------ccCCCCCCCCEEecCCCCCCC
Q 046642           12 KLSNLITAIILSNNSFVGEIPT----SIANLKGLRNLDLSNNNLQ---GRIP-------LSLSNLTAIESMDLSSNMLSG   77 (207)
Q Consensus        12 ~~l~~L~~L~Ls~n~i~~~~p~----~~~~l~~L~~L~Ls~n~l~---~~~p-------~~~~~l~~L~~L~ls~N~l~~   77 (207)
                      ..+..++.++||+|.|...-..    .+.+-.+|+..+++.-...   ..++       ..+-.+++|+..+||.|.+..
T Consensus        27 ~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~  106 (388)
T COG5238          27 EMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGS  106 (388)
T ss_pred             HhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCc
Confidence            3577889999999998744333    3445566777776653322   1122       234567888888888888876


Q ss_pred             CCchh----hhcCCccceecCCCCcCc
Q 046642           78 NIPQQ----LSELTSLEFFDVSDNLLT  100 (207)
Q Consensus        78 ~~p~~----~~~l~~L~~l~l~~N~l~  100 (207)
                      ..|..    +..-+.|.+|.+++|.+.
T Consensus       107 ~~~e~L~d~is~~t~l~HL~l~NnGlG  133 (388)
T COG5238         107 EFPEELGDLISSSTDLVHLKLNNNGLG  133 (388)
T ss_pred             ccchHHHHHHhcCCCceeEEeecCCCC
Confidence            66654    344567888888888654

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=90.80  E-value=0.51  Score=37.86  Aligned_cols=85  Identities=22%  Similarity=0.250  Sum_probs=53.0

Q ss_pred             cccccEEEccCCCCCCCCchhc----cCCCCCCEEECcCCcCCCCCcc-------------cCCCCCCCCEEecCCCCCC
Q 046642           14 SNLITAIILSNNSFVGEIPTSI----ANLKGLRNLDLSNNNLQGRIPL-------------SLSNLTAIESMDLSSNMLS   76 (207)
Q Consensus        14 l~~L~~L~Ls~n~i~~~~p~~~----~~l~~L~~L~Ls~n~l~~~~p~-------------~~~~l~~L~~L~ls~N~l~   76 (207)
                      ++.|+..+||.|.|....|..+    ..-+.|..|.|++|.+...--.             ...+-+.|+......|++.
T Consensus        91 cp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRle  170 (388)
T COG5238          91 CPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLE  170 (388)
T ss_pred             CCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhc
Confidence            4678899999999987777654    4557899999999987521111             1234567788888888775


Q ss_pred             CCCch-----hhhcCCccceecCCCCcC
Q 046642           77 GNIPQ-----QLSELTSLEFFDVSDNLL   99 (207)
Q Consensus        77 ~~~p~-----~~~~l~~L~~l~l~~N~l   99 (207)
                       ..|.     .+..-..|+.+.+..|.+
T Consensus       171 -ngs~~~~a~~l~sh~~lk~vki~qNgI  197 (388)
T COG5238         171 -NGSKELSAALLESHENLKEVKIQQNGI  197 (388)
T ss_pred             -cCcHHHHHHHHHhhcCceeEEeeecCc
Confidence             2222     122223455555555544

>PF15102 TMEM154: TMEM154 protein family

Probab=90.71  E-value=0.16  Score=36.39  Aligned_cols=31  Identities=6%  Similarity=-0.094  Sum_probs=12.5

Q ss_pred             eeeeehhhhHHHHHHHHHHHhhcchhhHHHHH
Q 046642          155 KTVVIGYASGTIIGVILGHIFSTRKYEWLAKT  186 (207)
Q Consensus       155 ~~~~i~~~~~~~~~~~~~~~~~~~~~~w~~~~  186 (207)
                      +.++|..++.+++++++ ++++.+.|||+.|.
T Consensus        59 LmIlIP~VLLvlLLl~v-V~lv~~~kRkr~K~   89 (146)
T PF15102_consen   59 LMILIPLVLLVLLLLSV-VCLVIYYKRKRTKQ   89 (146)
T ss_pred             EEEeHHHHHHHHHHHHH-HHheeEEeecccCC
Confidence            34444433333333333 33333445555543

>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region

Probab=90.57  E-value=0.33  Score=35.01  Aligned_cols=20  Identities=20%  Similarity=0.315  Sum_probs=9.6

Q ss_pred             ceeeeehhhhHHHHHHHHHH
Q 046642          154 WKTVVIGYASGTIIGVILGH  173 (207)
Q Consensus       154 ~~~~~i~~~~~~~~~~~~~~  173 (207)
                      ...+++|+++++++++++++
T Consensus        51 VIGvVVGVGg~ill~il~lv   70 (154)
T PF04478_consen   51 VIGVVVGVGGPILLGILALV   70 (154)
T ss_pred             EEEEEecccHHHHHHHHHhh
Confidence            34556665554444433333

The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].

>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls

Probab=89.47  E-value=0.28  Score=34.62  Aligned_cols=10  Identities=20%  Similarity=0.447  Sum_probs=3.6

Q ss_pred             HHHHHHHHHh
Q 046642          166 IIGVILGHIF  175 (207)
Q Consensus       166 ~~~~~~~~~~  175 (207)
                      ++++++++++
T Consensus         9 i~~i~l~~~~   18 (130)
T PF12273_consen    9 IVAILLFLFL   18 (130)
T ss_pred             HHHHHHHHHH
Confidence            3333333333

Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].

>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane

Probab=88.67  E-value=0.25  Score=34.45  Aligned_cols=16  Identities=38%  Similarity=0.424  Sum_probs=6.8

Q ss_pred             ehhhhHHHHHHHHHHH
Q 046642          159 IGYASGTIIGVILGHI  174 (207)
Q Consensus       159 i~~~~~~~~~~~~~~~  174 (207)
                      +++++|++++++.+++
T Consensus        67 ~~Ii~gv~aGvIg~Il   82 (122)
T PF01102_consen   67 IGIIFGVMAGVIGIIL   82 (122)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             eehhHHHHHHHHHHHH
Confidence            4444444444443333

Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.

>smart00364 LRR_BAC Leucine-rich repeats, bacterial type

Probab=87.85  E-value=0.38  Score=23.81  Aligned_cols=13  Identities=23%  Similarity=0.376  Sum_probs=6.3

Q ss_pred             cccEEEccCCCCC
Q 046642           16 LITAIILSNNSFV   28 (207)
Q Consensus        16 ~L~~L~Ls~n~i~   28 (207)
                      +|+.|+.++|+++
T Consensus         3 ~L~~L~vs~N~Lt   15 (26)
T smart00364        3 SLKELNVSNNQLT   15 (26)
T ss_pred             ccceeecCCCccc
Confidence            3444555555544

>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane

Probab=87.46  E-value=0.22  Score=34.70  Aligned_cols=23  Identities=17%  Similarity=0.170  Sum_probs=14.3

Q ss_pred             ceeeeehhhhHHHHHHHHHHHhh
Q 046642          154 WKTVVIGYASGTIIGVILGHIFS  176 (207)
Q Consensus       154 ~~~~~i~~~~~~~~~~~~~~~~~  176 (207)
                      ..++++|+++|+++.++++.+++
T Consensus        66 i~~Ii~gv~aGvIg~Illi~y~i   88 (122)
T PF01102_consen   66 IIGIIFGVMAGVIGIILLISYCI   88 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             eeehhHHHHHHHHHHHHHHHHHH
Confidence            45677888877766555444444

Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.

>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily

Probab=86.77  E-value=0.57  Score=23.18  Aligned_cols=13  Identities=23%  Similarity=0.227  Sum_probs=6.3

Q ss_pred             cccEEEccCCCCC
Q 046642           16 LITAIILSNNSFV   28 (207)
Q Consensus        16 ~L~~L~Ls~n~i~   28 (207)
                      +|+.|+|+.|.|+
T Consensus         3 ~L~~L~L~~NkI~   15 (26)
T smart00365        3 NLEELDLSQNKIK   15 (26)
T ss_pred             ccCEEECCCCccc
Confidence            4444555555443

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=85.82  E-value=0.098  Score=25.12  Aligned_cols=12  Identities=42%  Similarity=0.772  Sum_probs=4.0

Q ss_pred             CCCEEecCCCCC
Q 046642           64 AIESMDLSSNML   75 (207)
Q Consensus        64 ~L~~L~ls~N~l   75 (207)
                      +|+.|++++|.|
T Consensus         3 ~L~~L~l~~n~i   14 (24)
T PF13516_consen    3 NLETLDLSNNQI   14 (24)
T ss_dssp             T-SEEE-TSSBE
T ss_pred             CCCEEEccCCcC
Confidence            334444444433

...

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=85.41  E-value=0.056  Score=43.65  Aligned_cols=85  Identities=20%  Similarity=0.233  Sum_probs=47.4

Q ss_pred             cccEEEccCCCCCC-CCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCC-CCCC-CchhhhcCCcccee
Q 046642           16 LITAIILSNNSFVG-EIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNM-LSGN-IPQQLSELTSLEFF   92 (207)
Q Consensus        16 ~L~~L~Ls~n~i~~-~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~-l~~~-~p~~~~~l~~L~~l   92 (207)
                      .++.||||+..|+. .+-.-+..+.+|+.|.|.++++...+-..+..=.+|+.|+++... ++.. ..-.+.+++.|..|
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L  265 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL  265 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence            46677777777662 222334455667777777777765555555555666666666542 2210 01124556666666


Q ss_pred             cCCCCcCc
Q 046642           93 DVSDNLLT  100 (207)
Q Consensus        93 ~l~~N~l~  100 (207)
                      +++.+.+.
T Consensus       266 NlsWc~l~  273 (419)
T KOG2120|consen  266 NLSWCFLF  273 (419)
T ss_pred             CchHhhcc
Confidence            66666544

>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains

Probab=83.56  E-value=1.8  Score=33.08  Aligned_cols=7  Identities=29%  Similarity=0.629  Sum_probs=2.6

Q ss_pred             eehhhhH
Q 046642          158 VIGYASG  164 (207)
Q Consensus       158 ~i~~~~~  164 (207)
                      ++|+++|
T Consensus        40 ~iaiVAG   46 (221)
T PF08374_consen   40 MIAIVAG   46 (221)
T ss_pred             eeeeecc
Confidence            3333333

They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].

>PF13908 Shisa: Wnt and FGF inhibitory regulator

Probab=83.08  E-value=1.9  Score=32.09  Aligned_cols=22  Identities=27%  Similarity=0.431  Sum_probs=10.0

Q ss_pred             eeeeehhhhHHHHHHHHHHHhh
Q 046642          155 KTVVIGYASGTIIGVILGHIFS  176 (207)
Q Consensus       155 ~~~~i~~~~~~~~~~~~~~~~~  176 (207)
                      ..++++++++++++++++++++
T Consensus        78 ~~iivgvi~~Vi~Iv~~Iv~~~   99 (179)
T PF13908_consen   78 TGIIVGVICGVIAIVVLIVCFC   99 (179)
T ss_pred             eeeeeehhhHHHHHHHhHhhhe
Confidence            3455555554444444333333

>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world

Probab=81.64  E-value=0.81  Score=37.09  Aligned_cols=6  Identities=0%  Similarity=-0.120  Sum_probs=2.2

Q ss_pred             hhcchh
Q 046642          175 FSTRKY  180 (207)
Q Consensus       175 ~~~~~~  180 (207)
                      +++|||
T Consensus       278 ILRYRR  283 (299)
T PF02009_consen  278 ILRYRR  283 (299)
T ss_pred             HHHHHH
Confidence            333333

Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].

>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region

Probab=81.38  E-value=0.76  Score=33.17  Aligned_cols=24  Identities=29%  Similarity=0.339  Sum_probs=17.6

Q ss_pred             eeeeehhhhHHHHHHHHHHHhhcc
Q 046642          155 KTVVIGYASGTIIGVILGHIFSTR  178 (207)
Q Consensus       155 ~~~~i~~~~~~~~~~~~~~~~~~~  178 (207)
                      ..++||+++|+.+.++++++++.|
T Consensus        48 knIVIGvVVGVGg~ill~il~lvf   71 (154)
T PF04478_consen   48 KNIVIGVVVGVGGPILLGILALVF   71 (154)
T ss_pred             ccEEEEEEecccHHHHHHHHHhhe
Confidence            468899999987777766555543

The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=81.19  E-value=1  Score=36.67  Aligned_cols=87  Identities=22%  Similarity=0.262  Sum_probs=55.7

Q ss_pred             hhhhhcccccEEEccCCCCC---CCCchhccCCCCCCEEECcCCcC-CCCCcccCCCCCCCCEEecCCCCCCCCCchh--
Q 046642            9 EYEKLSNLITAIILSNNSFV---GEIPTSIANLKGLRNLDLSNNNL-QGRIPLSLSNLTAIESMDLSSNMLSGNIPQQ--   82 (207)
Q Consensus         9 ~~~~~l~~L~~L~Ls~n~i~---~~~p~~~~~l~~L~~L~Ls~n~l-~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~--   82 (207)
                      .+..+-.+|+.|+|++..=.   .-+.---...++|..||||.|.. +...-..|.+++.|++|.++.+..  .+|..  
T Consensus       280 ~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~--i~p~~~~  357 (419)
T KOG2120|consen  280 AVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYD--IIPETLL  357 (419)
T ss_pred             HHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcC--CChHHee
Confidence            34556677888888874311   11111123578888999988763 333334567788888888887753  45554  


Q ss_pred             -hhcCCccceecCCCC
Q 046642           83 -LSELTSLEFFDVSDN   97 (207)
Q Consensus        83 -~~~l~~L~~l~l~~N   97 (207)
                       +...++|.+||+.+.
T Consensus       358 ~l~s~psl~yLdv~g~  373 (419)
T KOG2120|consen  358 ELNSKPSLVYLDVFGC  373 (419)
T ss_pred             eeccCcceEEEEeccc
Confidence             456678888887654

>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type

Probab=81.01  E-value=1.5  Score=21.91  Aligned_cols=12  Identities=75%  Similarity=1.035  Sum_probs=5.6

Q ss_pred             CCCEEECcCCcC
Q 046642           40 GLRNLDLSNNNL   51 (207)
Q Consensus        40 ~L~~L~Ls~n~l   51 (207)
                      +|+.|||++|.+
T Consensus         3 ~L~~LdL~~N~i   14 (28)
T smart00368        3 SLRELDLSNNKL   14 (28)
T ss_pred             ccCEEECCCCCC
Confidence            344444444444

>PF06697 DUF1191: Protein of unknown function (DUF1191); InterPro: IPR010605 This family contains hypothetical plant proteins of unknown function

Probab=80.44  E-value=2.9  Score=33.42  Aligned_cols=16  Identities=25%  Similarity=0.569  Sum_probs=7.9

Q ss_pred             eeeehhhhHHHHHHHH
Q 046642          156 TVVIGYASGTIIGVIL  171 (207)
Q Consensus       156 ~~~i~~~~~~~~~~~~  171 (207)
                      .+++|+++|+++++++
T Consensus       214 ~iv~g~~~G~~~L~ll  229 (278)
T PF06697_consen  214 KIVVGVVGGVVLLGLL  229 (278)
T ss_pred             EEEEEehHHHHHHHHH
Confidence            3455545555444444

>PF15050 SCIMP: SCIMP protein

Probab=80.33  E-value=1.1  Score=30.80  Aligned_cols=24  Identities=21%  Similarity=0.386  Sum_probs=9.8

Q ss_pred             HHHHHHHHHhhcchhhHHHHHhccC
Q 046642          166 IIGVILGHIFSTRKYEWLAKTFHLQ  190 (207)
Q Consensus       166 ~~~~~~~~~~~~~~~~w~~~~~~~~  190 (207)
                      ++.++++++++|. .||..|..+.|
T Consensus        18 ~vS~~lglIlyCv-cR~~lRqGkkw   41 (133)
T PF15050_consen   18 LVSVVLGLILYCV-CRWQLRQGKKW   41 (133)
T ss_pred             HHHHHHHHHHHHH-HHHHHHccccc
Confidence            3333444433332 33455544444

>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]

Probab=80.13  E-value=0.53  Score=28.66  Aligned_cols=16  Identities=25%  Similarity=0.468  Sum_probs=0.0

Q ss_pred             eeehhhhHHHHHHHHH
Q 046642          157 VVIGYASGTIIGVILG  172 (207)
Q Consensus       157 ~~i~~~~~~~~~~~~~  172 (207)
                      ++.|+++|+++.++++
T Consensus        14 vIaG~Vvgll~ailLI   29 (64)
T PF01034_consen   14 VIAGGVVGLLFAILLI   29 (64)
T ss_dssp             ----------------
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            3444444444333333

Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	207
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		2e-19
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		2e-19
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		8e-11
2wfh_A	193	The Human Slit 2 Dimerization Domain D4 Length = 19		3e-04
4b8c_D	727	Nuclease Module Of The Yeast Ccr4-Not Complex Lengt		4e-04

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score = 92.0 bits (227), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 53/116 (45%), Positives = 71/116 (61%), Gaps = 1/116 (0%)
Query: 22  LSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQ 81
           +S N   G IP  I ++  L  L+L +N++ G IP  + +L  +  +DLSSN L G IPQ
Sbjct: 636 MSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQ 695
Query: 82  QLSELTSLEFFDVSDNLLTGPIPRGKQFDTFGKSSFDGNPGLCGGPLSKKCDNSEA 137
            +S LT L   D+S+N L+GPIP   QF+TF  + F  NPGLCG PL  +CD S A
Sbjct: 696 AMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPL-PRCDPSNA 750

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score = 92.0 bits (227), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 53/116 (45%), Positives = 71/116 (61%), Gaps = 1/116 (0%)
Query: 22  LSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQ 81
           +S N   G IP  I ++  L  L+L +N++ G IP  + +L  +  +DLSSN L G IPQ
Sbjct: 639 MSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQ 698
Query: 82  QLSELTSLEFFDVSDNLLTGPIPRGKQFDTFGKSSFDGNPGLCGGPLSKKCDNSEA 137
            +S LT L   D+S+N L+GPIP   QF+TF  + F  NPGLCG PL  +CD S A
Sbjct: 699 AMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPL-PRCDPSNA 753

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 63.5 bits (153), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 47/143 (32%), Positives = 69/143 (48%), Gaps = 24/143 (16%)
Query: 9   EYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQG-------------RI 55
            Y   S L T++ +S N   G+IP + ANL  L  +DLS N L+G             +I
Sbjct: 168 SYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKI 226
Query: 56  PLSLSNLT----------AIESMDLSSNMLSGNIPQQLSELTSLEFFDVSDNLLTGPIPR 105
            L+ ++L            +  +DL +N + G +PQ L++L  L   +VS N L G IP+
Sbjct: 227 HLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286
Query: 106 GKQFDTFGKSSFDGNPGLCGGPL 128
           G     F  S++  N  LCG PL
Sbjct: 287 GGNLQRFDVSAYANNKCLCGSPL 309

>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4 Length = 193

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 35/125 (28%), Positives = 56/125 (44%), Gaps = 4/125 (3%)
Query: 2   SNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSN 61
           SNKG ++  + +   +T + L  N F   +P  ++N K L  +DLSNN +      S SN
Sbjct: 18  SNKGLKVLPKGIPRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSN 76
Query: 62  LTAIESMDLSSNMLSGNIPQQLSELTSLEFFDVSDNLLTGPIPRGK--QFDTFGKSSFDG 119
           +T + ++ LS N L    P+    L SL    +  N ++  +P G           +   
Sbjct: 77  MTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISV-VPEGAFNDLSALSHLAIGA 135
Query: 120 NPGLC 124
           NP  C
Sbjct: 136 NPLYC 140

>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex Length = 727

Iteration: 1
 Score = 41.2 bits (95), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 31/95 (32%), Positives = 47/95 (49%), Gaps = 9/95 (9%)
Query: 15  NLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNM 74
           + +T + L+ NS   E+P  I NL  LR LDLS+N L   +P  L +   ++      NM
Sbjct: 247 DFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTS-LPAELGSCFQLKYFYFFDNM 304
Query: 75  LSGNIPQQLSELTSLEFFDVSDNLLTGPIPRGKQF 109
           ++  +P +   L +L+F  V  N      P  KQF
Sbjct: 305 VT-TLPWEFGNLCNLQFLGVEGN------PLEKQF 332

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	207
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-53
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-29
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-29
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	9e-29
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-28
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-27
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-26
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	7e-26
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-25
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-24
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	7e-23
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	8e-23
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-22
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-20
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	9e-20
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-16
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-12
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-42
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-31
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	5e-30
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-20
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-19
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-18
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-17
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-16
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-16
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-16
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-15
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-15
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-15
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-15
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-15
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-14
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-14
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-13
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-12
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-07
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-19
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-18
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-18
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-18
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-18
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-16
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-15
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-14
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-12
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-09
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-08
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-07
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-07
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-06
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-18
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-17
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-17
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-16
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-16
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-15
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	9e-15
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-14
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-14
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-14
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-13
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-12
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-12
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-10
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-08
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-17
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	8e-17
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-14
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-11
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-11
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-11
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-10
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	7e-09
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-08
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-08
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-16
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-15
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-15
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	7e-15
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-13
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-12
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-11
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-10
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-09
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	7e-08
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	9e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-05
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-16
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-14
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-11
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-10
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-15
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-15
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-15
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-13
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-13
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-13
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-13
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-13
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-12
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-11
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-10
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-06
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-14
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-13
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-11
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-11
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-09
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	7e-06
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	8e-14
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	6e-12
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-10
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-10
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	8e-13
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	7e-11
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-10
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-10
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-10
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-09
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-07
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-07
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-05
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-12
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	6e-12
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-11
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-11
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	6e-11
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	8e-11
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	9e-10
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-08
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-04
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	8e-12
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-08
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	9e-08
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-05
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-04
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	8e-12
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-10
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	8e-10
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-09
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-05
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	6e-04
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-11
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-11
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-10
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-09
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-11
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-11
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-11
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-11
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-11
1o6v_A	466	Internalin A; bacterial infection, extracellular r	7e-11
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-09
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-09
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-08
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-07
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-11
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-10
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	8e-10
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-09
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-09
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-09
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-07
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	7e-07
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-06
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-05
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	5e-11
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	5e-10
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	8e-08
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-07
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-06
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-04
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-04
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-10
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	6e-08
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-10
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-09
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-07
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	5e-07
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	6e-07
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-06
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-04
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	6e-04
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	8e-10
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-08
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-07
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-06
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	9e-10
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-09
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-09
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	7e-09
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	9e-09
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-08
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-08
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	7e-08
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-06
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-09
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-06
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	9e-06
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-04
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-09
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-09
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-08
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	8e-08
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-07
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-07
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	7e-07
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	9e-07
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-06
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-06
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-06
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	7e-04
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-09
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	5e-08
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-06
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	4e-09
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	5e-08
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-07
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	9e-07
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	5e-09
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-08
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	5e-09
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-08
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-08
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-08
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-06
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-06
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	8e-09
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-08
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	9e-08
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	9e-08
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-07
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-07
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-06
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-08
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-08
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-07
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-07
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-08
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-07
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-07
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-06
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	7e-06
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-08
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	8e-08
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-07
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-05
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-08
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-08
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	5e-08
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	6e-08
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-07
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-07
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-05
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-08
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	7e-08
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	4e-05
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-08
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	6e-07
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-06
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-05
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	8e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-08
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-05
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	5e-08
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-06
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	4e-06
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	7e-06
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	6e-04
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	6e-08
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-05
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-05
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-04
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	7e-08
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-04
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-07
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	6e-07
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	5e-05
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	8e-05
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	9e-05
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-07
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-06
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	5e-04
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	8e-07
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	6e-04
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	9e-07
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	7e-06
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-05
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-05
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-04
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	3e-06
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	4e-05
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	3e-06
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	4e-06
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	9e-05
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	4e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	7e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	4e-05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	6e-04
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	5e-05
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	7e-05
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-04
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	3e-04
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	2e-04
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-04
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	7e-04
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	4e-04
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	8e-04
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	4e-04

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  180 bits (458), Expect = 5e-53
 Identities = 50/137 (36%), Positives = 73/137 (53%)

Query: 4   KGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLT 63
            G        +  +  + +S N   G IP  I ++  L  L+L +N++ G IP  + +L 
Sbjct: 621 GGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLR 680

Query: 64  AIESMDLSSNMLSGNIPQQLSELTSLEFFDVSDNLLTGPIPRGKQFDTFGKSSFDGNPGL 123
            +  +DLSSN L G IPQ +S LT L   D+S+N L+GPIP   QF+TF  + F  NPGL
Sbjct: 681 GLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGL 740

Query: 124 CGGPLSKKCDNSEASPP 140
           CG PL +   ++     
Sbjct: 741 CGYPLPRCDPSNADGYA 757

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  113 bits (284), Expect = 3e-29
 Identities = 39/99 (39%), Positives = 54/99 (54%), Gaps = 1/99 (1%)

Query: 7   ELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIE 66
            L     + L   + L NN F G+IP +++N   L +L LS N L G IP SL +L+ + 
Sbjct: 387 NLCQNPKNTLQE-LYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLR 445

Query: 67  SMDLSSNMLSGNIPQQLSELTSLEFFDVSDNLLTGPIPR 105
            + L  NML G IPQ+L  + +LE   +  N LTG IP 
Sbjct: 446 DLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPS 484

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  112 bits (283), Expect = 4e-29
 Identities = 38/93 (40%), Positives = 54/93 (58%), Gaps = 1/93 (1%)

Query: 12  KLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLS 71
             S L  ++ LS N   G IP+S+ +L  LR+L L  N L+G IP  L  +  +E++ L 
Sbjct: 416 NCSEL-VSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILD 474

Query: 72  SNMLSGNIPQQLSELTSLEFFDVSDNLLTGPIP 104
            N L+G IP  LS  T+L +  +S+N LTG IP
Sbjct: 475 FNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIP 507

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  111 bits (280), Expect = 9e-29
 Identities = 36/94 (38%), Positives = 50/94 (53%), Gaps = 1/94 (1%)

Query: 12  KLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLS 71
            LS L   + L  N   GEIP  +  +K L  L L  N+L G IP  LSN T +  + LS
Sbjct: 440 SLSKL-RDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLS 498

Query: 72  SNMLSGNIPQQLSELTSLEFFDVSDNLLTGPIPR 105
           +N L+G IP+ +  L +L    +S+N  +G IP 
Sbjct: 499 NNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPA 532

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  111 bits (280), Expect = 1e-28
 Identities = 37/95 (38%), Positives = 52/95 (54%), Gaps = 1/95 (1%)

Query: 12  KLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLS 71
            +  L T +IL  N   GEIP+ ++N   L  + LSNN L G IP  +  L  +  + LS
Sbjct: 464 YVKTLET-LILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLS 522

Query: 72  SNMLSGNIPQQLSELTSLEFFDVSDNLLTGPIPRG 106
           +N  SGNIP +L +  SL + D++ NL  G IP  
Sbjct: 523 NNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAA 557

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  106 bits (266), Expect = 6e-27
 Identities = 33/96 (34%), Positives = 51/96 (53%), Gaps = 3/96 (3%)

Query: 11  EKLSNLITAIILSNNSFVGEIPTSIA-NLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMD 69
             L +L   + L+ N F GEIP  ++     L  LDLS N+  G +P    + + +ES+ 
Sbjct: 266 LPLKSL-QYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLA 324

Query: 70  LSSNMLSGNIPQQ-LSELTSLEFFDVSDNLLTGPIP 104
           LSSN  SG +P   L ++  L+  D+S N  +G +P
Sbjct: 325 LSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELP 360

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  103 bits (260), Expect = 5e-26
 Identities = 29/93 (31%), Positives = 49/93 (52%), Gaps = 4/93 (4%)

Query: 12  KLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLS 71
               L   + +S N   G++   ++    L  LD+S+NN    IP  L + +A++ +D+S
Sbjct: 176 GCGEL-KHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDIS 231

Query: 72  SNMLSGNIPQQLSELTSLEFFDVSDNLLTGPIP 104
            N LSG+  + +S  T L+  ++S N   GPIP
Sbjct: 232 GNKLSGDFSRAISTCTELKLLNISSNQFVGPIP 264

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  103 bits (259), Expect = 7e-26
 Identities = 30/93 (32%), Positives = 52/93 (55%), Gaps = 4/93 (4%)

Query: 12  KLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLS 71
           +  NL   + +S+N+F   IP  + +   L++LD+S N L G    ++S  T ++ +++S
Sbjct: 198 RCVNL-EFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNIS 255

Query: 72  SNMLSGNIPQQLSELTSLEFFDVSDNLLTGPIP 104
           SN   G IP     L SL++  +++N  TG IP
Sbjct: 256 SNQFVGPIPP--LPLKSLQYLSLAENKFTGEIP 286

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  101 bits (253), Expect = 4e-25
 Identities = 38/98 (38%), Positives = 59/98 (60%), Gaps = 5/98 (5%)

Query: 12  KLSNLITAIILSNNSFVGEIPT-SIANLKGLRNLDLSNNNLQGRIPLSLSNLTA-IESMD 69
             S L  ++ LS+N+F GE+P  ++  ++GL+ LDLS N   G +P SL+NL+A + ++D
Sbjct: 316 SCSLL-ESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLD 374

Query: 70  LSSNMLSGNIPQQL--SELTSLEFFDVSDNLLTGPIPR 105
           LSSN  SG I   L  +   +L+   + +N  TG IP 
Sbjct: 375 LSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPP 412

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 99.6 bits (249), Expect = 1e-24
 Identities = 27/94 (28%), Positives = 45/94 (47%), Gaps = 4/94 (4%)

Query: 12  KLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLS 71
             S L   + +S N   G+   +I+    L+ L++S+N   G IP     L +++ + L+
Sbjct: 221 DCSAL-QHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLA 277

Query: 72  SNMLSGNIPQQLS-ELTSLEFFDVSDNLLTGPIP 104
            N  +G IP  LS    +L   D+S N   G +P
Sbjct: 278 ENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVP 311

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 94.6 bits (236), Expect = 7e-23
 Identities = 31/93 (33%), Positives = 48/93 (51%), Gaps = 5/93 (5%)

Query: 12  KLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLS 71
             +NL   I LSNN   GEIP  I  L+ L  L LSNN+  G IP  L +  ++  +DL+
Sbjct: 488 NCTNLNW-ISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLN 546

Query: 72  SNMLSGNIPQQLSELTSLEFFDVSDNLLTGPIP 104
           +N+ +G IP  + + +      ++ N + G   
Sbjct: 547 TNLFNGTIPAAMFKQS----GKIAANFIAGKRY 575

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 94.6 bits (236), Expect = 8e-23
 Identities = 30/97 (30%), Positives = 48/97 (49%), Gaps = 7/97 (7%)

Query: 12  KLSNLITAIILSNNSFVGEIPTSIA---NLKGLRNLDLSNNNLQGRIPLSLSNLTAIESM 68
           KL++L   + LS NS  G              L++L +S N + G + +S      +E +
Sbjct: 149 KLNSL-EVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVS--RCVNLEFL 205

Query: 69  DLSSNMLSGNIPQQLSELTSLEFFDVSDNLLTGPIPR 105
           D+SSN  S  IP  L + ++L+  D+S N L+G   R
Sbjct: 206 DVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSR 241

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 92.3 bits (230), Expect = 6e-22
 Identities = 28/98 (28%), Positives = 50/98 (51%), Gaps = 7/98 (7%)

Query: 13  LSNLITAIILSNNSFVGEIPT--SIANLKGLRNLDLSNNNLQGRIPLS-LSNLTAIESMD 69
            ++L T++ LS NS  G + T  S+ +  GL+ L++S+N L     +S    L ++E +D
Sbjct: 99  SASL-TSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLD 157

Query: 70  LSSNMLSGNIPQQL---SELTSLEFFDVSDNLLTGPIP 104
           LS+N +SG              L+   +S N ++G + 
Sbjct: 158 LSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD 195

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 88.0 bits (219), Expect = 2e-20
 Identities = 25/95 (26%), Positives = 42/95 (44%), Gaps = 7/95 (7%)

Query: 12  KLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLS 71
           +L NL   + LSNNSF G IP  + + + L  LDL+ N   G IP ++   +      ++
Sbjct: 512 RLENLAI-LKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSG----KIA 566

Query: 72  SNMLSGNIPQQLSELTSLEFFDVSDNL--LTGPIP 104
           +N ++G     +      +    + NL    G   
Sbjct: 567 ANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRS 601

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 85.7 bits (213), Expect = 9e-20
 Identities = 29/93 (31%), Positives = 48/93 (51%), Gaps = 6/93 (6%)

Query: 17  ITAIILSNNSF---VGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSN 73
           +T+I LS+         + +S+ +L GL +L LSN+++ G +        ++ S+DLS N
Sbjct: 52  VTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVS-GFKCSASLTSLDLSRN 110

Query: 74  MLSGNIP--QQLSELTSLEFFDVSDNLLTGPIP 104
            LSG +     L   + L+F +VS N L  P  
Sbjct: 111 SLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGK 143

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 76.5 bits (189), Expect = 1e-16
 Identities = 17/96 (17%), Positives = 39/96 (40%), Gaps = 7/96 (7%)

Query: 12  KLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLS 71
              +LI  + L+ N F G IP ++          ++ N + G+  + + N    +    +
Sbjct: 536 DCRSLIW-LDLNTNLFNGTIPAAMFKQS----GKIAANFIAGKRYVYIKNDGMKKECHGA 590

Query: 72  SNM--LSGNIPQQLSELTSLEFFDVSDNLLTGPIPR 105
            N+    G   +QL+ L++    +++  +  G    
Sbjct: 591 GNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSP 626

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 63.0 bits (154), Expect = 5e-12
 Identities = 21/72 (29%), Positives = 38/72 (52%), Gaps = 4/72 (5%)

Query: 41  LRNLDLSNNNLQ---GRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEFFDVSDN 97
           + ++DLS+  L      +  SL +LT +ES+ LS++ ++G++        SL   D+S N
Sbjct: 52  VTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVS-GFKCSASLTSLDLSRN 110

Query: 98  LLTGPIPRGKQF 109
            L+GP+      
Sbjct: 111 SLSGPVTTLTSL 122

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  144 bits (365), Expect = 2e-42
 Identities = 35/118 (29%), Positives = 57/118 (48%), Gaps = 2/118 (1%)

Query: 13  LSNL-ITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLS 71
            +NL +  + LS N   G+      + K  + + L+ N+L   +   +     +  +DL 
Sbjct: 194 FANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLR 252

Query: 72  SNMLSGNIPQQLSELTSLEFFDVSDNLLTGPIPRGKQFDTFGKSSFDGNPGLCGGPLS 129
           +N + G +PQ L++L  L   +VS N L G IP+G     F  S++  N  LCG PL 
Sbjct: 253 NNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLP 310

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  115 bits (290), Expect = 2e-31
 Identities = 33/94 (35%), Positives = 48/94 (51%)

Query: 12  KLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLS 71
            L  L    I   N+ VG IP +IA L  L  L +++ N+ G IP  LS +  + ++D S
Sbjct: 74  NLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFS 133

Query: 72  SNMLSGNIPQQLSELTSLEFFDVSDNLLTGPIPR 105
            N LSG +P  +S L +L       N ++G IP 
Sbjct: 134 YNALSGTLPPSISSLPNLVGITFDGNRISGAIPD 167

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  111 bits (280), Expect = 5e-30
 Identities = 31/95 (32%), Positives = 48/95 (50%), Gaps = 2/95 (2%)

Query: 12  KLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLS 71
           KL+ L   + +++ +  G IP  ++ +K L  LD S N L G +P S+S+L  +  +   
Sbjct: 99  KLTQLHY-LYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFD 157

Query: 72  SNMLSGNIPQQLSELTSL-EFFDVSDNLLTGPIPR 105
            N +SG IP      + L     +S N LTG IP 
Sbjct: 158 GNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPP 192

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 86.8 bits (216), Expect = 1e-20
 Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 3/95 (3%)

Query: 13  LSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGR--IPLSLSNLTAIESMDL 70
           LS+ +      N +++G +  +      + NLDLS  NL     IP SL+NL  +  + +
Sbjct: 24  LSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYI 83

Query: 71  SS-NMLSGNIPQQLSELTSLEFFDVSDNLLTGPIP 104
              N L G IP  +++LT L +  ++   ++G IP
Sbjct: 84  GGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIP 118

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 85.4 bits (212), Expect = 1e-19
 Identities = 25/127 (19%), Positives = 46/127 (36%), Gaps = 7/127 (5%)

Query: 11  EKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDL 70
           + LS+L   + L +N F         +L  L+ +DL  NNL        +N  +++S++L
Sbjct: 533 KGLSHL-HILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNL 591

Query: 71  SSNMLSGNIPQQLSE-LTSLEFFDVSDNLLTGPIPRGKQFDTFGKSSFDGNPGL-----C 124
             N+++    +       +L   D+  N           F  +   +    P L     C
Sbjct: 592 QKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINETHTNIPELSSHYLC 651

Query: 125 GGPLSKK 131
             P    
Sbjct: 652 NTPPHYH 658

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 81.6 bits (202), Expect = 2e-18
 Identities = 20/106 (18%), Positives = 39/106 (36%), Gaps = 2/106 (1%)

Query: 2   SNKGTELEYEKLSNL--ITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSL 59
            N+   L     +    +T++ +  N+     P     L  L+ L+L +N L      + 
Sbjct: 34  HNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTF 93

Query: 60  SNLTAIESMDLSSNMLSGNIPQQLSELTSLEFFDVSDNLLTGPIPR 105
           +  T +  + L SN +         +  +L   D+S N L+     
Sbjct: 94  AFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLG 139

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 79.7 bits (197), Expect = 1e-17
 Identities = 20/92 (21%), Positives = 35/92 (38%), Gaps = 1/92 (1%)

Query: 13  LSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSS 72
           L  L   + L +N        + A    L  L L +N++Q            + ++DLS 
Sbjct: 72  LPMLKV-LNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSH 130

Query: 73  NMLSGNIPQQLSELTSLEFFDVSDNLLTGPIP 104
           N LS        +L +L+   +S+N +     
Sbjct: 131 NGLSSTKLGTQVQLENLQELLLSNNKIQALKS 162

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 76.6 bits (189), Expect = 1e-16
 Identities = 26/137 (18%), Positives = 48/137 (35%), Gaps = 16/137 (11%)

Query: 2   SNKGTELEYEKLSNL--ITAIILSNN--------SFVGEIPTSIANLKGLRNLDLSNNNL 51
           +N    +  + L  L  +  + L +N        +  G     +  L  L  L+L +N  
Sbjct: 489 NNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGF 548

Query: 52  QGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEFFDVSDNLLTGPIPRGKQFDT 111
                    +L  ++ +DL  N L+       +   SL+  ++  NL+T      K F  
Sbjct: 549 DEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEK--KVFGP 606

Query: 112 FGKS----SFDGNPGLC 124
             ++        NP  C
Sbjct: 607 AFRNLTELDMRFNPFDC 623

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 76.6 bits (189), Expect = 1e-16
 Identities = 24/105 (22%), Positives = 44/105 (41%), Gaps = 3/105 (2%)

Query: 13  LSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIP--LSLSNLTAIESMDL 70
             NLIT + LS+N        +   L+ L+ L LSNN +Q      L +   ++++ ++L
Sbjct: 120 QKNLIT-LDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLEL 178

Query: 71  SSNMLSGNIPQQLSELTSLEFFDVSDNLLTGPIPRGKQFDTFGKS 115
           SSN +    P     +  L    +++  L   +      +    S
Sbjct: 179 SSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTS 223

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 75.4 bits (186), Expect = 3e-16
 Identities = 18/92 (19%), Positives = 34/92 (36%)

Query: 13  LSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSS 72
           L   IT + L++N        +      L +LD+  N +    P     L  ++ ++L  
Sbjct: 23  LPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQH 82

Query: 73  NMLSGNIPQQLSELTSLEFFDVSDNLLTGPIP 104
           N LS    +  +  T+L    +  N +     
Sbjct: 83  NELSQLSDKTFAFCTNLTELHLMSNSIQKIKN 114

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 73.9 bits (182), Expect = 1e-15
 Identities = 17/92 (18%), Positives = 27/92 (29%), Gaps = 1/92 (1%)

Query: 22  LSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLS-LSNLTAIESMDLSSNMLSGNIP 80
           L+ N        + + L  L  LDL  N +   +       L  I  + LS N       
Sbjct: 388 LTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTR 447

Query: 81  QQLSELTSLEFFDVSDNLLTGPIPRGKQFDTF 112
              + + SL+   +    L         F   
Sbjct: 448 NSFALVPSLQRLMLRRVALKNVDSSPSPFQPL 479

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 73.1 bits (180), Expect = 2e-15
 Identities = 18/97 (18%), Positives = 35/97 (36%), Gaps = 4/97 (4%)

Query: 12  KLSNLITAIILSNNSFVGEIP-TSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDL 70
            L +L   + L  N    E+       L+ +  + LS N        S + + +++ + L
Sbjct: 403 WLGHL-EVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLML 461

Query: 71  SSNMLSG--NIPQQLSELTSLEFFDVSDNLLTGPIPR 105
               L    + P     L +L   D+S+N +      
Sbjct: 462 RRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDD 498

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 72.7 bits (179), Expect = 3e-15
 Identities = 25/104 (24%), Positives = 39/104 (37%), Gaps = 11/104 (10%)

Query: 11  EKLSNLITAIILSNNSF--VGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESM 68
             + +L   ++L   +   V   P+    L+ L  LDLSNNN+       L  L  +E +
Sbjct: 451 ALVPSL-QRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEIL 509

Query: 69  DLSSNMLS--------GNIPQQLSELTSLEFFDVSDNLLTGPIP 104
           DL  N L+        G     L  L+ L   ++  N       
Sbjct: 510 DLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPV 553

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 72.7 bits (179), Expect = 3e-15
 Identities = 20/114 (17%), Positives = 41/114 (35%), Gaps = 10/114 (8%)

Query: 12  KLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNN---------NLQGRIPLSLSNL 62
            L  L     L  N+       S+  L  +R L+L  +         +L      S   L
Sbjct: 270 WLPQLEY-FFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWL 328

Query: 63  TAIESMDLSSNMLSGNIPQQLSELTSLEFFDVSDNLLTGPIPRGKQFDTFGKSS 116
             +E +++  N + G      + L +L++  +S++  +      + F +   S 
Sbjct: 329 KCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSP 382

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 71.6 bits (176), Expect = 7e-15
 Identities = 26/109 (23%), Positives = 38/109 (34%), Gaps = 3/109 (2%)

Query: 17  ITAIILSNNSFVGEIPTSIANLKG--LRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNM 74
           I  + LSN+       T+   LK   L  LDLS NNL      S + L  +E   L  N 
Sbjct: 224 IRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNN 283

Query: 75  LSGNIPQQLSELTSLEFFDVSDNLLTGPIPRGKQFDTFGKSSFDGNPGL 123
           +       L  L ++ + ++  +     I            SF     L
Sbjct: 284 IQHLFSHSLHGLFNVRYLNLKRSFTKQSIS-LASLPKIDDFSFQWLKCL 331

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 70.4 bits (173), Expect = 2e-14
 Identities = 19/110 (17%), Positives = 44/110 (40%), Gaps = 7/110 (6%)

Query: 2   SNKGTELEYEKLSNL--ITAIILSNNSFVGEIPTSIANLKG--LRNLDLSNNNLQGRIPL 57
            N  +  +      L  +  ++LSNN         +       L+ L+LS+N ++   P 
Sbjct: 130 HNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPG 189

Query: 58  SLSNLTAIESMDLSSNMLSGNIPQQLSE---LTSLEFFDVSDNLLTGPIP 104
               +  +  + L++  L  ++ ++L      TS+    +S++ L+    
Sbjct: 190 CFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSN 239

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 70.0 bits (172), Expect = 2e-14
 Identities = 22/99 (22%), Positives = 37/99 (37%), Gaps = 6/99 (6%)

Query: 12  KLSNLITAIILSNNSFVGEIPTSIA---NLKGLRNLDLSNNNLQGRIPLSLSNL--TAIE 66
            +  L   + L+N      +   +        +RNL LSN+ L      +   L  T + 
Sbjct: 193 AIGRL-FGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLT 251

Query: 67  SMDLSSNMLSGNIPQQLSELTSLEFFDVSDNLLTGPIPR 105
            +DLS N L+       + L  LE+F +  N +      
Sbjct: 252 MLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSH 290

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 67.7 bits (166), Expect = 1e-13
 Identities = 23/129 (17%), Positives = 41/129 (31%), Gaps = 28/129 (21%)

Query: 6   TELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAI 65
             + Y  L    T   +S  S       S   LK L +L++ +N++ G      + L  +
Sbjct: 296 FNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINL 355

Query: 66  ESMDLSSNM-----------------------LSGN-----IPQQLSELTSLEFFDVSDN 97
           + + LS++                        L+ N          S L  LE  D+  N
Sbjct: 356 KYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLN 415

Query: 98  LLTGPIPRG 106
            +   +   
Sbjct: 416 EIGQELTGQ 424

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 65.0 bits (159), Expect = 1e-12
 Identities = 22/101 (21%), Positives = 39/101 (38%), Gaps = 8/101 (7%)

Query: 6   TELEYEKLS-NLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTA 64
             L+Y  LS +  +   L+N +FV    +       L  L+L+ N +      + S L  
Sbjct: 353 INLKYLSLSNSFTSLRTLTNETFVSLAHSP------LHILNLTKNKISKIESDAFSWLGH 406

Query: 65  IESMDLSSNMLSGNIPQQ-LSELTSLEFFDVSDNLLTGPIP 104
           +E +DL  N +   +  Q    L ++    +S N       
Sbjct: 407 LEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTR 447

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 50.0 bits (120), Expect = 1e-07
 Identities = 15/64 (23%), Positives = 25/64 (39%), Gaps = 3/64 (4%)

Query: 41  LRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEFFDVSDNLLT 100
               D S+  L  ++P  L   T I  ++L+ N L        +  + L   DV  N ++
Sbjct: 6   HEVADCSHLKLT-QVPDDL--PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTIS 62

Query: 101 GPIP 104
              P
Sbjct: 63  KLEP 66

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 85.1 bits (211), Expect = 1e-19
 Identities = 24/95 (25%), Positives = 42/95 (44%), Gaps = 2/95 (2%)

Query: 11  EKLSNLITAIILSNNSFVGEI-PTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMD 69
             LS+L   + ++ NSF     P     L+ L  LDLS   L+   P + ++L++++ ++
Sbjct: 442 NGLSSLEV-LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 500

Query: 70  LSSNMLSGNIPQQLSELTSLEFFDVSDNLLTGPIP 104
           +S N            L SL+  D S N +     
Sbjct: 501 MSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKK 535

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 82.4 bits (204), Expect = 1e-18
 Identities = 23/94 (24%), Positives = 42/94 (44%), Gaps = 2/94 (2%)

Query: 12  KLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLS 71
           +L NL   + LS        PT+  +L  L+ L++S+NN           L +++ +D S
Sbjct: 468 ELRNLTF-LDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYS 526

Query: 72  SNMLSGNIPQQLSEL-TSLEFFDVSDNLLTGPIP 104
            N +  +  Q+L    +SL F +++ N       
Sbjct: 527 LNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE 560

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 81.6 bits (202), Expect = 2e-18
 Identities = 19/92 (20%), Positives = 34/92 (36%)

Query: 13  LSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSS 72
           L      + LS N        S  +   L+ LDLS   +Q     +  +L+ + ++ L+ 
Sbjct: 26  LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG 85

Query: 73  NMLSGNIPQQLSELTSLEFFDVSDNLLTGPIP 104
           N +        S L+SL+     +  L     
Sbjct: 86  NPIQSLALGAFSGLSSLQKLVAVETNLASLEN 117

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 80.8 bits (200), Expect = 4e-18
 Identities = 17/89 (19%), Positives = 35/89 (39%), Gaps = 1/89 (1%)

Query: 13  LSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSS 72
              L   + LS          +  +L  L  L L+ N +Q     + S L++++ +    
Sbjct: 51  FPEL-QVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVE 109

Query: 73  NMLSGNIPQQLSELTSLEFFDVSDNLLTG 101
             L+      +  L +L+  +V+ NL+  
Sbjct: 110 TNLASLENFPIGHLKTLKELNVAHNLIQS 138

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 80.5 bits (199), Expect = 6e-18
 Identities = 21/96 (21%), Positives = 42/96 (43%), Gaps = 3/96 (3%)

Query: 12  KLSNLITAIILSNNSFVGEIPTSI-ANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDL 70
            L  L   +   +++       S+  +L+ L  LD+S+ + +       + L+++E + +
Sbjct: 394 GLEQL-EHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKM 452

Query: 71  SSNMLSGNI-PQQLSELTSLEFFDVSDNLLTGPIPR 105
           + N    N  P   +EL +L F D+S   L    P 
Sbjct: 453 AGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPT 488

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 74.3 bits (183), Expect = 7e-16
 Identities = 19/96 (19%), Positives = 39/96 (40%), Gaps = 3/96 (3%)

Query: 12  KLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLS-LSNLTAIESMDL 70
             ++L   + LS N  +  + ++   L+ L +LD  ++NL+     S   +L  +  +D+
Sbjct: 371 GTTSLKY-LDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDI 428

Query: 71  SSNMLSGNIPQQLSELTSLEFFDVSDNLLTGPIPRG 106
           S            + L+SLE   ++ N         
Sbjct: 429 SHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPD 464

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 72.0 bits (177), Expect = 5e-15
 Identities = 23/96 (23%), Positives = 35/96 (36%), Gaps = 5/96 (5%)

Query: 13  LSNLITAIILSNN--SFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDL 70
           L +L   + LS N  SF G    S      L+ LDLS N +   +  +   L  +E +D 
Sbjct: 346 LPSL-EFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDF 403

Query: 71  SSNMLSGNIPQQ-LSELTSLEFFDVSDNLLTGPIPR 105
             + L           L +L + D+S          
Sbjct: 404 QHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG 439

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 68.9 bits (169), Expect = 5e-14
 Identities = 28/107 (26%), Positives = 40/107 (37%), Gaps = 6/107 (5%)

Query: 2   SNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQ--GRIPLSL 59
           + K  +    KL +L     L+  S  G    S  +L  L  LDLS N L   G    S 
Sbjct: 313 NCKFGQFPTLKLKSLKR---LTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSD 369

Query: 60  SNLTAIESMDLSSNMLSGNIPQQLSELTSLEFFDVSDNLLTGPIPRG 106
              T+++ +DLS N +   +      L  LE  D   + L       
Sbjct: 370 FGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFS 415

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 65.0 bits (159), Expect = 1e-12
 Identities = 24/99 (24%), Positives = 43/99 (43%), Gaps = 7/99 (7%)

Query: 13  LSNLITAIILSNNSFVG-EIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLT----AIES 67
           L  L   + +++N     ++P   +NL  L +LDLS+N +Q      L  L        S
Sbjct: 123 LKTLKE-LNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLS 181

Query: 68  MDLSSNMLSGNIPQQLSELTSLEFFDVSDNLLTGPIPRG 106
           +DLS N ++   P    E+  L    + +N  +  + + 
Sbjct: 182 LDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKT 219

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 53.9 bits (130), Expect = 6e-09
 Identities = 25/114 (21%), Positives = 45/114 (39%), Gaps = 24/114 (21%)

Query: 12  KLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNN-------------------NLQ 52
            L+N+ ++  L + +         +   G ++L+L N                    + +
Sbjct: 280 CLTNV-SSFSLVSVTIERVKD--FSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNK 336

Query: 53  GRIPLSLSNLTAIESMDLSSNMLS--GNIPQQLSELTSLEFFDVSDNLLTGPIP 104
           G    S  +L ++E +DLS N LS  G   Q     TSL++ D+S N +     
Sbjct: 337 GGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSS 390

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 52.3 bits (126), Expect = 2e-08
 Identities = 12/108 (11%), Positives = 29/108 (26%), Gaps = 10/108 (9%)

Query: 2   SNKGTELEYEKLSNLITAIILSN-----NSFVGEIPTSIANLKGLRNLDLSNNNLQGRIP 56
                + +   L  L    I        + ++ +I      L  + +  L +  ++    
Sbjct: 240 EGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER--V 297

Query: 57  LSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEFFDVSDNLLTGPIP 104
              S     + ++L +         +L  L  L     + N       
Sbjct: 298 KDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRL---TFTSNKGGNAFS 342

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 50.0 bits (120), Expect = 2e-07
 Identities = 18/114 (15%), Positives = 36/114 (31%), Gaps = 11/114 (9%)

Query: 2   SNKGTELEYEKLSNL-ITAIILSNNSFVGEIP-TSIANLKGLRNLDLSNNNLQGRIPL-- 57
            N    ++      + +  + L NN     +  T I  L GL    L     +    L  
Sbjct: 186 LNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEK 245

Query: 58  -SLSNLTAIESMDLSSNMLS------GNIPQQLSELTSLEFFDVSDNLLTGPIP 104
              S L  + ++ +    L+       +I    + LT++  F +    +     
Sbjct: 246 FDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD 299

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 49.3 bits (118), Expect = 2e-07
 Identities = 17/93 (18%), Positives = 30/93 (32%), Gaps = 5/93 (5%)

Query: 12  KLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIP-LSLSNLTAIESMDL 70
           ++  L  ++ LS N      P +   ++ L  L L NN     +    +  L  +E   L
Sbjct: 174 QMPLLNLSLDLSLNPMNFIQPGAFKEIR-LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRL 232

Query: 71  SSNMLSGNIPQQ---LSELTSLEFFDVSDNLLT 100
                      +    S L  L    + +  L 
Sbjct: 233 VLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLA 265

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 45.4 bits (108), Expect = 5e-06
 Identities = 10/88 (11%), Positives = 29/88 (32%), Gaps = 5/88 (5%)

Query: 11  EKLSNLITAIILSNNSFVGEIPTSIANL-KGLRNLDLSNNNLQGRIPLS--LSNLTAIES 67
           + L++L   +  S N  +      + +    L  L+L+ N+          L  +     
Sbjct: 515 KCLNSL-QVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQ 573

Query: 68  MDLSSNMLSGNIPQQLSELTSLEFFDVS 95
           + +    +    P     +  +   +++
Sbjct: 574 LLVEVERMECATPSDKQGM-PVLSLNIT 600

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 81.2 bits (201), Expect = 3e-18
 Identities = 20/104 (19%), Positives = 38/104 (36%), Gaps = 11/104 (10%)

Query: 7   ELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLR------NLDLSNNNLQGRIPLSLS 60
           +     L  L+  I LS NSF  + PT   N   L+        D   N      P  ++
Sbjct: 506 DFRATTLPYLVG-IDLSYNSF-SKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGIT 563

Query: 61  NLTAIESMDLSSNMLSGNIPQQLSELTSLEFFDVSDNLLTGPIP 104
              ++  + + SN +   + +++    ++   D+ DN       
Sbjct: 564 LCPSLTQLQIGSNDIRK-VNEKI--TPNISVLDIKDNPNISIDL 604

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 77.4 bits (191), Expect = 6e-17
 Identities = 19/109 (17%), Positives = 41/109 (37%), Gaps = 4/109 (3%)

Query: 2   SNKGTELEYEKLSNLITAIILSNNSF-VGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLS 60
            +     +      +   I +  N+     + TS+  +K L  L+   N L+G++P +  
Sbjct: 293 DDWQALADAPVGEKI-QIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFG 350

Query: 61  NLTAIESMDLSSNMLSGNIPQQLSELTSLEFFDVSDNLLTGPIPRGKQF 109
           +   + S++L+ N ++            +E    + N L   IP     
Sbjct: 351 SEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKY-IPNIFDA 398

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 77.4 bits (191), Expect = 7e-17
 Identities = 13/112 (11%), Positives = 32/112 (28%), Gaps = 12/112 (10%)

Query: 2   SNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSN 61
           ++        +                        NLK L ++++ N     ++P  L  
Sbjct: 215 NSPFVAENICEAWENEN---SEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKA 271

Query: 62  LTAIESMDLSSNML--------SGNIPQQLSELTSLEFFDVSDN-LLTGPIP 104
           L  ++ ++++ N                       ++   +  N L T P+ 
Sbjct: 272 LPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVE 323

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 76.6 bits (189), Expect = 1e-16
 Identities = 23/103 (22%), Positives = 37/103 (35%), Gaps = 10/103 (9%)

Query: 12  KLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQG-------RIPLSLSNLTA 64
           K  N+ + I LSNN          +    L +++L  N L             +  N   
Sbjct: 431 KGINVSS-INLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYL 489

Query: 65  IESMDLSSNMLSGNIPQ-QLSELTSLEFFDVSDNLLTGPIPRG 106
           + S+DL  N L+      + + L  L   D+S N  +   P  
Sbjct: 490 LTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQ 531

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 75.1 bits (185), Expect = 4e-16
 Identities = 20/108 (18%), Positives = 40/108 (37%), Gaps = 15/108 (13%)

Query: 8   LEYEKLSNLITAIILSNNSFVG-------EIPTSIANLKGLRNLDLSNNNLQGRIPLSLS 60
            + + +S + +AI  S N            +  +      + +++LSNN +        S
Sbjct: 396 FDAKSVSVM-SAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFS 454

Query: 61  NLTAIESMDLSSNMLSG-------NIPQQLSELTSLEFFDVSDNLLTG 101
             + + S++L  NML+        +  +       L   D+  N LT 
Sbjct: 455 TGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTK 502

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 72.0 bits (177), Expect = 4e-15
 Identities = 16/99 (16%), Positives = 37/99 (37%), Gaps = 11/99 (11%)

Query: 12  KLSNLITAIILSNNSFVGEIP--TSIANLKGLRNLDLSNNNLQG-------RIPLSLSNL 62
               +   +  ++N     IP      ++  +  +D S N +          +  +    
Sbjct: 375 FTEQV-ENLSFAHNKL-KYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKG 432

Query: 63  TAIESMDLSSNMLSGNIPQQLSELTSLEFFDVSDNLLTG 101
             + S++LS+N +S    +  S  + L   ++  N+LT 
Sbjct: 433 INVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTE 471

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 71.2 bits (175), Expect = 9e-15
 Identities = 22/110 (20%), Positives = 36/110 (32%), Gaps = 18/110 (16%)

Query: 11  EKLSNLITAIILSNNSFVG-------EIPTSIANLKGLRNLDLSNNNLQGRIP--LSLSN 61
              S L + I L  N           +   +  N   L ++DL  N L   +      + 
Sbjct: 454 STGSPLSS-INLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTK-LSDDFRATT 511

Query: 62  LTAIESMDLSSNMLSGNIPQQLSELTSLEFFDVSDNL------LTGPIPR 105
           L  +  +DLS N  S   P Q    ++L+ F + +             P 
Sbjct: 512 LPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPE 560

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 70.8 bits (174), Expect = 1e-14
 Identities = 17/96 (17%), Positives = 36/96 (37%), Gaps = 5/96 (5%)

Query: 12  KLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLS 71
           K+  L   +    N   G++P +  +   L +L+L+ N +             +E++  +
Sbjct: 328 KMKKL-GMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFA 385

Query: 72  SNMLSGNIPQ--QLSELTSLEFFDVSDNLLTGPIPR 105
            N L   IP       ++ +   D S N +     +
Sbjct: 386 HNKLKY-IPNIFDAKSVSVMSAIDFSYNEIGSVDGK 420

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 70.5 bits (173), Expect = 2e-14
 Identities = 14/100 (14%), Positives = 29/100 (29%), Gaps = 7/100 (7%)

Query: 12  KLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQG----RIPLSLSNLTAIES 67
               + T + L      G +P +I  L  L  L L ++  +       P  +S   + E 
Sbjct: 79  SNGRV-TGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ 137

Query: 68  MDLSSNMLSGNIPQQLS--ELTSLEFFDVSDNLLTGPIPR 105
                              + + L    ++ +     I +
Sbjct: 138 KQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKK 177

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 70.1 bits (172), Expect = 2e-14
 Identities = 15/108 (13%), Positives = 34/108 (31%), Gaps = 20/108 (18%)

Query: 13  LSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQG------------------- 53
           ++   T I   +N+    +  ++  L  LR   + N+                       
Sbjct: 181 ITLKDTQIGQLSNNI-TFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYK 239

Query: 54  RIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEFFDVSDNLLTG 101
              L   NL  +  +++ +      +P  L  L  ++  +V+ N    
Sbjct: 240 TEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGIS 287

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 67.8 bits (166), Expect = 1e-13
 Identities = 10/83 (12%), Positives = 25/83 (30%), Gaps = 3/83 (3%)

Query: 15  NLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNM 74
            +        N  + E P  I     L  L + +N+++  +   +     I  +D+  N 
Sbjct: 542 GIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRK-VNEKI--TPNISVLDIKDNP 598

Query: 75  LSGNIPQQLSELTSLEFFDVSDN 97
                   +        + +  +
Sbjct: 599 NISIDLSYVCPYIEAGMYMLFYD 621

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 63.9 bits (156), Expect = 3e-12
 Identities = 11/98 (11%), Positives = 29/98 (29%), Gaps = 5/98 (5%)

Query: 11  EKLSNLIT--AIILSNNSFVGEIPTSIANLK--GLRNLDLSNNNLQGRIPLSLSNLTAIE 66
           + +S  ++          +               L    ++++  Q  I  S        
Sbjct: 127 KGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDT 186

Query: 67  SMDLSSNMLSGNIPQQLSELTSLEFFDVSDNLLTGPIP 104
            +   SN ++  + + +  LT L  F + ++       
Sbjct: 187 QIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENI 223

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 63.1 bits (154), Expect = 5e-12
 Identities = 16/86 (18%), Positives = 30/86 (34%), Gaps = 4/86 (4%)

Query: 23  SNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGN---- 78
             + +  +   S+ +   +  L L      GR+P ++  LT +E + L S+    N    
Sbjct: 65  ELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLF 124

Query: 79  IPQQLSELTSLEFFDVSDNLLTGPIP 104
            P+ +S   S E              
Sbjct: 125 GPKGISANMSDEQKQKMRMHYQKTFV 150

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 57.0 bits (138), Expect = 6e-10
 Identities = 10/99 (10%), Positives = 27/99 (27%), Gaps = 8/99 (8%)

Query: 12  KLSNLITAIILSNNSFVG----EIPTSIANLKGLRNLDLSNNNLQGRIP--LSLSNLTAI 65
           +L+ L   + L ++          P  I+             + Q          + + +
Sbjct: 103 QLTELEV-LALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDL 161

Query: 66  ESMDLSSNMLSGNIPQQLSELTSLEFFDVSDNLLTGPIP 104
               ++S+    +I +               N +T  + 
Sbjct: 162 IKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VS 199

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 51.2 bits (123), Expect = 6e-08
 Identities = 20/96 (20%), Positives = 35/96 (36%), Gaps = 4/96 (4%)

Query: 9   EYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESM 68
           +Y  L  +  A+   N S  G      AN    + LD+          +SL++   +  +
Sbjct: 31  DYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKELDMWGAQ----PGVSLNSNGRVTGL 86

Query: 69  DLSSNMLSGNIPQQLSELTSLEFFDVSDNLLTGPIP 104
            L     SG +P  + +LT LE   +  +       
Sbjct: 87  SLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNER 122

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 78.0 bits (192), Expect = 4e-17
 Identities = 17/112 (15%), Positives = 36/112 (32%), Gaps = 15/112 (13%)

Query: 12  KLSNLITAII-----LSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIE 66
             +    A+                  S +NLK L +++L N     ++P  L +L  ++
Sbjct: 459 PFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQ 518

Query: 67  SMDLSSNMLSG---------NIPQQLSELTSLEFFDVSDNLLTGPIPRGKQF 109
           S++++ N              +         ++ F +  N L    P     
Sbjct: 519 SLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEE-FPASASL 569

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 77.2 bits (190), Expect = 8e-17
 Identities = 22/131 (16%), Positives = 46/131 (35%), Gaps = 14/131 (10%)

Query: 7   ELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLR------NLDLSNNNLQGRIPLSLS 60
           +     L  L + + +S N F    PT   N   L+        D   N +  + P  ++
Sbjct: 746 DFRATTLPYL-SNMDVSYNCF-SSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGIT 803

Query: 61  NLTAIESMDLSSNMLSGNIPQQLSELTSLEFFDVSDN-LLTGPIPRGKQFDTFGKSSF-- 117
              ++  + + SN +   + ++L     L   D++DN  ++  +     +   G      
Sbjct: 804 TCPSLIQLQIGSNDIR-KVDEKL--TPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLY 860

Query: 118 DGNPGLCGGPL 128
           D    + G   
Sbjct: 861 DKTQDIRGCDA 871

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 70.3 bits (172), Expect = 2e-14
 Identities = 18/132 (13%), Positives = 42/132 (31%), Gaps = 19/132 (14%)

Query: 3   NKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQG--------- 53
            +   ++ +   +L    I +  + +  I  +I  L  L+ +  +N+             
Sbjct: 412 PEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWED 471

Query: 54  ----------RIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEFFDVSDNLLTGPI 103
                        LS SNL  +  ++L +      +P  L +L  L+  +++ N      
Sbjct: 472 ANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAA 531

Query: 104 PRGKQFDTFGKS 115
                +      
Sbjct: 532 QLKADWTRLADD 543

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 61.8 bits (150), Expect = 1e-11
 Identities = 17/118 (14%), Positives = 35/118 (29%), Gaps = 14/118 (11%)

Query: 7   ELEYEKLSNLITAIILSNNSFVGEIPT-----SIANLKGLRNLDLSNNNLQGRIPLSLSN 61
               + +  +  ++  S N    E                  + LS N +Q       + 
Sbjct: 637 IFNAKSVYVM-GSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFAT 695

Query: 62  LTAIESMDLSSNMLS-------GNIPQQLSELTSLEFFDVSDNLLTGPIPRGKQFDTF 112
            + I ++ LS+N+++                   L   D+  N LT  +    +  T 
Sbjct: 696 GSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTS-LSDDFRATTL 752

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 61.0 bits (148), Expect = 2e-11
 Identities = 12/86 (13%), Positives = 29/86 (33%), Gaps = 1/86 (1%)

Query: 17  ITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLS 76
           +T + L+     G +P +I  L  L+ L    ++      L        +  +   + + 
Sbjct: 325 VTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIR 384

Query: 77  GNIPQ-QLSELTSLEFFDVSDNLLTG 101
            +  +  L     L   D+  + +  
Sbjct: 385 MHYKKMFLDYDQRLNLSDLLQDAINR 410

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 60.7 bits (147), Expect = 4e-11
 Identities = 18/101 (17%), Positives = 34/101 (33%), Gaps = 9/101 (8%)

Query: 12  KLSNLITAIILSNNSFVGEIPTS--IANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMD 69
               +     +  N+   E P S  +  +  L  LD  +N ++  +  +      +  + 
Sbjct: 546 TGPKI-QIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVRH-LE-AFGTNVKLTDLK 601

Query: 70  LSSNMLSGNIPQQL-SELTSLEFFDVSDNLLTGPIPRGKQF 109
           L  N +   IP+   +    +E    S N L   IP     
Sbjct: 602 LDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKY-IPNIFNA 640

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 58.3 bits (141), Expect = 2e-10
 Identities = 9/81 (11%), Positives = 32/81 (39%)

Query: 25  NSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLS 84
           + +  +    + N   +  L L+    +GR+P ++  LT ++ +   ++  + +      
Sbjct: 309 DMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGD 368

Query: 85  ELTSLEFFDVSDNLLTGPIPR 105
           E  + +  +   + +     +
Sbjct: 369 EELTPDMSEERKHRIRMHYKK 389

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 54.1 bits (130), Expect = 7e-09
 Identities = 18/122 (14%), Positives = 38/122 (31%), Gaps = 21/122 (17%)

Query: 2   SNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSN 61
                  +   LS+L+   I  N         S  +LK  +  +L+N      I  ++  
Sbjct: 389 KMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNR--ITFISKAIQR 446

Query: 62  LTAIESMDLSSNMLSG-------------------NIPQQLSELTSLEFFDVSDNLLTGP 102
           LT ++ +  +++  +                    N     S L  L   ++ +      
Sbjct: 447 LTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQ 506

Query: 103 IP 104
           +P
Sbjct: 507 LP 508

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 51.4 bits (123), Expect = 5e-08
 Identities = 14/102 (13%), Positives = 33/102 (32%), Gaps = 1/102 (0%)

Query: 3   NKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNL 62
                 +Y+ L  +  A+   N  +      +  +     N +   +    +  + L N 
Sbjct: 264 TAEYIKDYKALKAIWEALDGKNWRYYSGTINNTIHSLNW-NFNKELDMWGDQPGVDLDNN 322

Query: 63  TAIESMDLSSNMLSGNIPQQLSELTSLEFFDVSDNLLTGPIP 104
             +  + L+     G +P  + +LT L+      +  T    
Sbjct: 323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGR 364

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 51.0 bits (122), Expect = 6e-08
 Identities = 11/94 (11%), Positives = 31/94 (32%), Gaps = 2/94 (2%)

Query: 11  EKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDL 70
           +        I +       +    +     L++    N  ++     S  +L   + +  
Sbjct: 374 DMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQ-IGN 432

Query: 71  SSNMLSGNIPQQLSELTSLEFFDVSDNLLTGPIP 104
            +N ++  I + +  LT L+    +++  T    
Sbjct: 433 LTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNI 465

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 75.1 bits (185), Expect = 4e-16
 Identities = 21/88 (23%), Positives = 39/88 (44%), Gaps = 1/88 (1%)

Query: 13  LSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSS 72
            +NL T + LS              L  L+ L++S+NNL        + L ++ ++D S 
Sbjct: 472 TTNL-TFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSF 530

Query: 73  NMLSGNIPQQLSELTSLEFFDVSDNLLT 100
           N +  +         SL FF++++N + 
Sbjct: 531 NRIETSKGILQHFPKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 72.8 bits (179), Expect = 2e-15
 Identities = 25/111 (22%), Positives = 43/111 (38%), Gaps = 3/111 (2%)

Query: 2   SNKGTELEYEKLSNL--ITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSL 59
            N    L+    SN   +  + LS          +   L  L NL L+ N +Q   P S 
Sbjct: 41  FNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSF 100

Query: 60  SNLTAIESMDLSSNMLSGNIPQQLSELTSLEFFDVSDNLLTGPIPRGKQFD 110
           S LT++E++      L+      + +L +L+  +V+ N +         F 
Sbjct: 101 SGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHS-CKLPAYFS 150

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 72.4 bits (178), Expect = 3e-15
 Identities = 24/95 (25%), Positives = 41/95 (43%), Gaps = 2/95 (2%)

Query: 11  EKLSNLITAIILSNNSFVGEIPTSI-ANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMD 69
             L++L T + ++ NSF     +++ AN   L  LDLS   L+         L  ++ ++
Sbjct: 445 LGLTSLNT-LKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLN 503

Query: 70  LSSNMLSGNIPQQLSELTSLEFFDVSDNLLTGPIP 104
           +S N L        ++L SL   D S N +     
Sbjct: 504 MSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKG 538

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 71.2 bits (175), Expect = 7e-15
 Identities = 22/92 (23%), Positives = 35/92 (38%)

Query: 13  LSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSS 72
           + +    I LS N        S +N   L+ LDLS   ++     +   L  + ++ L+ 
Sbjct: 30  IPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTG 89

Query: 73  NMLSGNIPQQLSELTSLEFFDVSDNLLTGPIP 104
           N +    P   S LTSLE     +  L     
Sbjct: 90  NPIQSFSPGSFSGLTSLENLVAVETKLASLES 121

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 68.1 bits (167), Expect = 1e-13
 Identities = 19/94 (20%), Positives = 36/94 (38%), Gaps = 3/94 (3%)

Query: 13  LSNLITAIILSNNSFVGEIPTS-IANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLS 71
           L  L   +   +++       S   +L+ L  LD+S  N +         LT++ ++ ++
Sbjct: 398 LEELQH-LDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMA 456

Query: 72  SNMLSGNIPQQ-LSELTSLEFFDVSDNLLTGPIP 104
            N    N      +  T+L F D+S   L     
Sbjct: 457 GNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISW 490

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 63.1 bits (154), Expect = 5e-12
 Identities = 18/96 (18%), Positives = 37/96 (38%), Gaps = 3/96 (3%)

Query: 12  KLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLS-LSNLTAIESMDL 70
             ++L   + LS N  +  +  +   L+ L++LD  ++ L+     S   +L  +  +D+
Sbjct: 374 GTNSL-RHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDI 431

Query: 71  SSNMLSGNIPQQLSELTSLEFFDVSDNLLTGPIPRG 106
           S      +       LTSL    ++ N         
Sbjct: 432 SYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSN 467

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 61.6 bits (150), Expect = 2e-11
 Identities = 25/107 (23%), Positives = 37/107 (34%), Gaps = 6/107 (5%)

Query: 2   SNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSN 61
             +  +     L  L  ++ L+ N   G I      L  L  LDLS N L      S S+
Sbjct: 316 RCQLKQFPTLDLPFL-KSLTLTMNK--GSISFKKVALPSLSYLDLSRNALSFSGCCSYSD 372

Query: 62  L--TAIESMDLSSNMLSGNIPQQLSELTSLEFFDVSDNLLTGPIPRG 106
           L   ++  +DLS N     +      L  L+  D   + L       
Sbjct: 373 LGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFS 418

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 58.5 bits (142), Expect = 2e-10
 Identities = 18/84 (21%), Positives = 33/84 (39%), Gaps = 3/84 (3%)

Query: 22  LSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQ 81
             +     ++P  I      +N+DLS N L+     S SN + ++ +DLS   +     +
Sbjct: 18  CMDQKLS-KVPDDI--PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDK 74

Query: 82  QLSELTSLEFFDVSDNLLTGPIPR 105
               L  L    ++ N +    P 
Sbjct: 75  AWHGLHHLSNLILTGNPIQSFSPG 98

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 53.9 bits (130), Expect = 6e-09
 Identities = 23/99 (23%), Positives = 40/99 (40%), Gaps = 7/99 (7%)

Query: 13  LSNLITAIILSNNSFVG-EIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLT----AIES 67
           L  L   + +++N     ++P   +NL  L ++DLS N +Q      L  L        S
Sbjct: 127 LITLKK-LNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLS 185

Query: 68  MDLSSNMLSGNIPQQLSELTSLEFFDVSDNLLTGPIPRG 106
           +D+S N +   I  Q  +   L    +  N  +  I + 
Sbjct: 186 LDMSLNPID-FIQDQAFQGIKLHELTLRGNFNSSNIMKT 223

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 50.8 bits (122), Expect = 7e-08
 Identities = 10/83 (12%), Positives = 26/83 (31%), Gaps = 5/83 (6%)

Query: 22  LSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQ 81
           L+  +   +       L  +  + L+  ++  +    +      +S+ +    L      
Sbjct: 268 LTYTNDFSDDIVKFHCLANVSAMSLAGVSI--KYLEDVPKHFKWQSLSIIRCQLKQFPTL 325

Query: 82  QLSELTSLEFFDVSDNLLTGPIP 104
            L  L SL    ++ N  +    
Sbjct: 326 DLPFLKSL---TLTMNKGSISFK 345

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 47.7 bits (114), Expect = 9e-07
 Identities = 13/90 (14%), Positives = 28/90 (31%), Gaps = 9/90 (10%)

Query: 20  IILSNNSFVGEIP-TSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESM--------DL 70
           + L  N     I  T + NL GL    L     +    L +   + +E +         L
Sbjct: 209 LTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRL 268

Query: 71  SSNMLSGNIPQQLSELTSLEFFDVSDNLLT 100
           +      +   +   L ++    ++   + 
Sbjct: 269 TYTNDFSDDIVKFHCLANVSAMSLAGVSIK 298

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 45.4 bits (108), Expect = 5e-06
 Identities = 13/76 (17%), Positives = 30/76 (39%), Gaps = 4/76 (5%)

Query: 29  GEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTS 88
           G +   I  +  +      +  L  ++P  +   ++ +++DLS N L        S  + 
Sbjct: 2   GSLNPCIEVVPNIT-YQCMDQKLS-KVPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSE 57

Query: 89  LEFFDVSDNLLTGPIP 104
           L++ D+S   +     
Sbjct: 58  LQWLDLSRCEIETIED 73

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 42.7 bits (101), Expect = 4e-05
 Identities = 14/80 (17%), Positives = 26/80 (32%), Gaps = 2/80 (2%)

Query: 12  KLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIP-LSLSNLTAIESMDL 70
           +   +  ++ +S N        +   +K L  L L  N     I    L NL  +    L
Sbjct: 178 ENPQVNLSLDMSLNPIDFIQDQAFQGIK-LHELTLRGNFNSSNIMKTCLQNLAGLHVHRL 236

Query: 71  SSNMLSGNIPQQLSELTSLE 90
                      ++ E + +E
Sbjct: 237 ILGEFKDERNLEIFEPSIME 256

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 72.7 bits (179), Expect = 2e-15
 Identities = 17/101 (16%), Positives = 34/101 (33%), Gaps = 2/101 (1%)

Query: 6   TELEYEKLSNL--ITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLT 63
             ++    S L  +T + L+          +  +   L  L L+ N L      +LS   
Sbjct: 46  PTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPK 105

Query: 64  AIESMDLSSNMLSGNIPQQLSELTSLEFFDVSDNLLTGPIP 104
           A++ +      +S      L    +LE   +  N ++    
Sbjct: 106 ALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKL 146

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 72.0 bits (177), Expect = 4e-15
 Identities = 16/93 (17%), Positives = 33/93 (35%)

Query: 13  LSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSS 72
           L N    +  S N       T+ + L  L  LDL+   +      +  +   ++++ L++
Sbjct: 31  LPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTA 90

Query: 73  NMLSGNIPQQLSELTSLEFFDVSDNLLTGPIPR 105
           N L       LS   +L+        ++     
Sbjct: 91  NPLIFMAETALSGPKALKHLFFIQTGISSIDFI 123

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 71.6 bits (176), Expect = 6e-15
 Identities = 19/89 (21%), Positives = 37/89 (41%), Gaps = 1/89 (1%)

Query: 13  LSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSS 72
              L T ++L+ N  +    T+++  K L++L      +     + L N   +ES+ L S
Sbjct: 80  QHRLDT-LVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGS 138

Query: 73  NMLSGNIPQQLSELTSLEFFDVSDNLLTG 101
           N +S     +      L+  D  +N +  
Sbjct: 139 NHISSIKLPKGFPTEKLKVLDFQNNAIHY 167

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 67.3 bits (165), Expect = 2e-13
 Identities = 21/98 (21%), Positives = 38/98 (38%), Gaps = 3/98 (3%)

Query: 13  LSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSS 72
            S L   + L+      E+P+ +  L  L+ L LS N  +    +S SN  ++  + +  
Sbjct: 277 FSGLQE-LDLTATHL-SELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKG 334

Query: 73  NMLSGNI-PQQLSELTSLEFFDVSDNLLTGPIPRGKQF 109
           N     +    L  L +L   D+S + +        Q 
Sbjct: 335 NTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQL 372

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 67.3 bits (165), Expect = 2e-13
 Identities = 23/97 (23%), Positives = 43/97 (44%), Gaps = 5/97 (5%)

Query: 11  EKLSNLITAIILSNNSFVGEI---PTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIES 67
           + L  L   + L  N F         S+  L  L  L LS  +L      + ++L  +  
Sbjct: 446 DGLPALQH-LNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNH 504

Query: 68  MDLSSNMLSGNIPQQLSELTSLEFFDVSDNLLTGPIP 104
           +DLS N L+ +  + LS L  + + +++ N ++  +P
Sbjct: 505 VDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILP 540

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 66.6 bits (163), Expect = 3e-13
 Identities = 24/89 (26%), Positives = 42/89 (47%), Gaps = 2/89 (2%)

Query: 13  LSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSS 72
           L  L   ++LS          +  +LK + ++DLS+N L      +LS+L  I  ++L+S
Sbjct: 475 LGRLEI-LVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIY-LNLAS 532

Query: 73  NMLSGNIPQQLSELTSLEFFDVSDNLLTG 101
           N +S  +P  L  L+     ++  N L  
Sbjct: 533 NHISIILPSLLPILSQQRTINLRQNPLDC 561

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 65.8 bits (161), Expect = 6e-13
 Identities = 23/110 (20%), Positives = 40/110 (36%), Gaps = 6/110 (5%)

Query: 2   SNKGTELEYEKLSNL--ITAIILSNNSFVGEIPTSI-ANLKGLRNLDLSNNNLQGRIPLS 58
            N+   L+ E       +  + L+      +   S   NL  L+ L+LS++ L       
Sbjct: 385 YNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQL 444

Query: 59  LSNLTAIESMDLSSNMLSGNIPQQ---LSELTSLEFFDVSDNLLTGPIPR 105
              L A++ ++L  N       Q+   L  L  LE   +S   L+     
Sbjct: 445 FDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQH 494

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 65.8 bits (161), Expect = 6e-13
 Identities = 26/99 (26%), Positives = 47/99 (47%), Gaps = 4/99 (4%)

Query: 11  EKLSNLITAIILSNNSFVGEIPT-SIANLKGLRNLDLSNNNLQ--GRIPLSLSNLTAIES 67
               +L T + +  N+   E+ T  + NL+ LR LDLS+++++      L L NL+ ++S
Sbjct: 322 SNFPSL-THLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQS 380

Query: 68  MDLSSNMLSGNIPQQLSELTSLEFFDVSDNLLTGPIPRG 106
           ++LS N       +   E   LE  D++   L     + 
Sbjct: 381 LNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQS 419

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 64.7 bits (158), Expect = 1e-12
 Identities = 19/123 (15%), Positives = 40/123 (32%), Gaps = 4/123 (3%)

Query: 2   SNKGTELEYEKLSNL--ITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSL 59
           +N    +    LS    +  +              + N K L +L L +N++        
Sbjct: 90  ANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKG 149

Query: 60  SNLTAIESMDLSSNMLSGNIPQQLSELTSLE--FFDVSDNLLTGPIPRGKQFDTFGKSSF 117
                ++ +D  +N +     + +S L        +++ N + G  P       F   +F
Sbjct: 150 FPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNF 209

Query: 118 DGN 120
            G 
Sbjct: 210 GGT 212

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 62.0 bits (151), Expect = 1e-11
 Identities = 25/108 (23%), Positives = 42/108 (38%), Gaps = 5/108 (4%)

Query: 3   NKGTELEYEKLSNL--ITAIILSNN--SFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLS 58
            K  EL    L NL  +  + LS++           + NL  L++L+LS N        +
Sbjct: 336 TKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEA 395

Query: 59  LSNLTAIESMDLSSNMLSGNIPQ-QLSELTSLEFFDVSDNLLTGPIPR 105
                 +E +DL+   L     Q     L  L+  ++S +LL     +
Sbjct: 396 FKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQ 443

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 57.7 bits (140), Expect = 4e-10
 Identities = 15/101 (14%), Positives = 36/101 (35%), Gaps = 4/101 (3%)

Query: 7   ELEYEKLSNLITAIILSNNSFVGEIPTSIANLKG--LRNLDLSNNNLQGRIPLSLSNLTA 64
            L+   + +L       +       P     L    + +++L  +        +    + 
Sbjct: 221 GLKNSTIQSLWL-GTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSG 279

Query: 65  IESMDLSSNMLSGNIPQQLSELTSLEFFDVSDNLLTGPIPR 105
           ++ +DL++  LS  +P  L  L++L+   +S N        
Sbjct: 280 LQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQI 319

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 46.9 bits (112), Expect = 2e-06
 Identities = 16/66 (24%), Positives = 34/66 (51%), Gaps = 2/66 (3%)

Query: 13  LSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSS 72
           L  +   + LS+N        ++++LKG+  L+L++N++   +P  L  L+   +++L  
Sbjct: 499 LKMM-NHVDLSHNRLTSSSIEALSHLKGIY-LNLASNHISIILPSLLPILSQQRTINLRQ 556

Query: 73  NMLSGN 78
           N L   
Sbjct: 557 NPLDCT 562

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 46.2 bits (110), Expect = 2e-06
 Identities = 21/137 (15%), Positives = 42/137 (30%), Gaps = 34/137 (24%)

Query: 2   SNKGTELEYEKLSNL----ITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPL 57
           +N    L  E +S+L      ++ L+ N     I     +    ++L+         I  
Sbjct: 162 NNAIHYLSKEDMSSLQQATNLSLNLNGNDI-AGIEPGAFDSAVFQSLNFGGTQNLLVIFK 220

Query: 58  SLSNLT----------------------------AIESMDLSSNMLSGNIPQQLSELTSL 89
            L N T                            ++ES++L  +             + L
Sbjct: 221 GLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGL 280

Query: 90  EFFDVSDNLLTGPIPRG 106
           +  D++   L+  +P G
Sbjct: 281 QELDLTATHLSE-LPSG 296

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 68.4 bits (168), Expect = 4e-14
 Identities = 18/89 (20%), Positives = 35/89 (39%), Gaps = 1/89 (1%)

Query: 12  KLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLS 71
            L  L   + L   + +   P        L+ L L + +    +PL +  LT +E +DL 
Sbjct: 227 HLPKLEE-LDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLR 285

Query: 72  SNMLSGNIPQQLSELTSLEFFDVSDNLLT 100
             +    +P  +++L +     V  +L  
Sbjct: 286 GCVNLSRLPSLIAQLPANCIILVPPHLQA 314

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 66.1 bits (162), Expect = 3e-13
 Identities = 15/91 (16%), Positives = 34/91 (37%), Gaps = 4/91 (4%)

Query: 7   ELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIE 66
            LE       +  + L +     + P     L  L+++ +    L   +P ++     +E
Sbjct: 74  LLEDATQPGRVA-LELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLE 130

Query: 67  SMDLSSNMLSGNIPQQLSELTSLEFFDVSDN 97
           ++ L+ N L   +P  ++ L  L    +   
Sbjct: 131 TLTLARNPLR-ALPASIASLNRLRELSIRAC 160

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 61.1 bits (149), Expect = 2e-11
 Identities = 19/98 (19%), Positives = 40/98 (40%), Gaps = 12/98 (12%)

Query: 12  KLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNL---------QGRIPLSLSNL 62
           + + L T + L+ N     +P SIA+L  LR L +                        L
Sbjct: 125 QFAGLET-LTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGL 182

Query: 63  TAIESMDLSSNMLSGNIPQQLSELTSLEFFDVSDNLLT 100
             ++S+ L    +  ++P  ++ L +L+   + ++ L+
Sbjct: 183 VNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS 219

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 60.3 bits (147), Expect = 3e-11
 Identities = 19/93 (20%), Positives = 34/93 (36%), Gaps = 2/93 (2%)

Query: 12  KLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLS 71
            L NL + + + N+     +  +I +L  L  LDL         P        ++ + L 
Sbjct: 204 NLQNLKS-LKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILK 261

Query: 72  SNMLSGNIPQQLSELTSLEFFDVSDNLLTGPIP 104
                  +P  +  LT LE  D+   +    +P
Sbjct: 262 DCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLP 294

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 55.7 bits (135), Expect = 1e-09
 Identities = 15/78 (19%), Positives = 30/78 (38%), Gaps = 1/78 (1%)

Query: 12  KLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLS 71
             + L   +IL + S +  +P  I  L  L  LDL       R+P  ++ L A   + + 
Sbjct: 251 GRAPLKR-LILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVP 309

Query: 72  SNMLSGNIPQQLSELTSL 89
            ++ +     +     + 
Sbjct: 310 PHLQAQLDQHRPVARPAE 327

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 44.6 bits (106), Expect = 7e-06
 Identities = 14/109 (12%), Positives = 30/109 (27%), Gaps = 23/109 (21%)

Query: 13  LSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIP---------LSLSNLT 63
            S     +    ++ +      ++  +   N D +  +   R            +   L 
Sbjct: 11  SSGREN-LYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALK 69

Query: 64  AI------------ESMDLSSNMLSGNIPQQLSELTSLEFFDVSDNLLT 100
           A              +++L S  L    P Q   L+ L+   +    L 
Sbjct: 70  ATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM 117

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 66.1 bits (162), Expect = 8e-14
 Identities = 21/100 (21%), Positives = 41/100 (41%), Gaps = 3/100 (3%)

Query: 2   SNKGTELEY-EKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLS 60
           +   T       LSNL   + +       +   +++ L  L  LD+S++     I   ++
Sbjct: 75  NIHATNYNPISGLSNL-ERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKIN 133

Query: 61  NLTAIESMDLSSNMLSGNIPQQLSELTSLEFFDVSDNLLT 100
            L  + S+DLS N    +I   L  L  L+  ++  + + 
Sbjct: 134 TLPKVNSIDLSYNGAITDI-MPLKTLPELKSLNIQFDGVH 172

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 61.1 bits (149), Expect = 6e-12
 Identities = 18/87 (20%), Positives = 38/87 (43%), Gaps = 3/87 (3%)

Query: 11  EKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDL 70
           E   N+   + ++N          I+ L  L  L +   ++      +LS LT++  +D+
Sbjct: 63  EYAHNI-KDLTINNIH-ATNY-NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI 119

Query: 71  SSNMLSGNIPQQLSELTSLEFFDVSDN 97
           S +    +I  +++ L  +   D+S N
Sbjct: 120 SHSAHDDSILTKINTLPKVNSIDLSYN 146

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 56.9 bits (138), Expect = 2e-10
 Identities = 23/102 (22%), Positives = 49/102 (48%), Gaps = 5/102 (4%)

Query: 3   NKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNL 62
           +    +   ++++L T I L+N + V ++ T I     +++L ++N +     P+S   L
Sbjct: 33  SSTANITEAQMNSL-TYITLANIN-VTDL-TGIEYAHNIKDLTINNIHATNYNPIS--GL 87

Query: 63  TAIESMDLSSNMLSGNIPQQLSELTSLEFFDVSDNLLTGPIP 104
           + +E + +    ++ +    LS LTSL   D+S +     I 
Sbjct: 88  SNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSIL 129

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 56.9 bits (138), Expect = 2e-10
 Identities = 20/102 (19%), Positives = 40/102 (39%), Gaps = 5/102 (4%)

Query: 2   SNKGTELEYEKLSNL--ITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSL 59
               T  +   LS L  +T + +S+++    I T I  L  + ++DLS N     I   L
Sbjct: 97  GKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PL 155

Query: 60  SNLTAIESMDLSSNMLSGNIPQQLSELTSLEFFDVSDNLLTG 101
             L  ++S+++  + +       + +   L         + G
Sbjct: 156 KTLPELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFSQTIGG 195

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 65.5 bits (160), Expect = 8e-13
 Identities = 19/111 (17%), Positives = 40/111 (36%), Gaps = 3/111 (2%)

Query: 2   SNKGTELEYEKLSNL--ITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSL 59
            N    L      +   +  + LS          +  +L  L  L L+ N +Q     + 
Sbjct: 37  FNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAF 96

Query: 60  SNLTAIESMDLSSNMLSGNIPQQLSELTSLEFFDVSDNLLTGPIPRGKQFD 110
           S L++++ +      L+      +  L +L+  +V+ NL+       + F 
Sbjct: 97  SGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQS-FKLPEYFS 146

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 59.7 bits (145), Expect = 7e-11
 Identities = 22/90 (24%), Positives = 37/90 (41%), Gaps = 2/90 (2%)

Query: 12  KLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRI-PLSLSNLTAIESMDL 70
            L NLI  + +S+             L  L  L ++ N+ Q    P   + L  +  +DL
Sbjct: 419 SLRNLIY-LDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDL 477

Query: 71  SSNMLSGNIPQQLSELTSLEFFDVSDNLLT 100
           S   L    P   + L+SL+  +++ N L 
Sbjct: 478 SQCQLEQLSPTAFNSLSSLQVLNMASNQLK 507

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 59.3 bits (144), Expect = 1e-10
 Identities = 19/88 (21%), Positives = 34/88 (38%)

Query: 13  LSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSS 72
           L      + LS N        S  +   L+ LDLS   +Q     +  +L+ + ++ L+ 
Sbjct: 26  LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG 85

Query: 73  NMLSGNIPQQLSELTSLEFFDVSDNLLT 100
           N +        S L+SL+     +  L 
Sbjct: 86  NPIQSLALGAFSGLSSLQKLVAVETNLA 113

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 59.0 bits (143), Expect = 1e-10
 Identities = 20/103 (19%), Positives = 43/103 (41%), Gaps = 5/103 (4%)

Query: 2   SNKGTEL--EYEKLSNLITAIILSNNSFVGEIPTSI-ANLKGLRNLDLSNNNLQGRIPLS 58
            N    +   +  L  L   +   +++       S+  +L+ L  LD+S+ + +      
Sbjct: 382 FNGVITMSSNFLGLEQL-EHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGI 440

Query: 59  LSNLTAIESMDLSSNMLSGNIPQQ-LSELTSLEFFDVSDNLLT 100
            + L+++E + ++ N    N      +EL +L F D+S   L 
Sbjct: 441 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE 483

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 57.8 bits (140), Expect = 3e-10
 Identities = 22/99 (22%), Positives = 42/99 (42%), Gaps = 3/99 (3%)

Query: 2   SNKGTELEYEKLSNL--ITAIILSNNSFVGEIPTSI-ANLKGLRNLDLSNNNLQGRIPLS 58
                       + L  +  + ++ NSF       I   L+ L  LDLS   L+   P +
Sbjct: 430 HTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTA 489

Query: 59  LSNLTAIESMDLSSNMLSGNIPQQLSELTSLEFFDVSDN 97
            ++L++++ ++++SN L          LTSL+   +  N
Sbjct: 490 FNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTN 528

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 55.9 bits (135), Expect = 2e-09
 Identities = 26/115 (22%), Positives = 39/115 (33%), Gaps = 15/115 (13%)

Query: 12  KLSNLITAIILSNN--SFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMD 69
            L +L   + LS N  SF G    S      L+ LDLS N +   +  +   L  +E +D
Sbjct: 345 DLPSL-EFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLD 402

Query: 70  LSSNMLSGNIPQ-QLSELTSLEFFDVSDNLLTGPIPRGKQFDTFGKSSFDGNPGL 123
              + L           L +L + D+S                     F+G   L
Sbjct: 403 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR----------VAFNGIFNGLSSL 447

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 49.7 bits (119), Expect = 2e-07
 Identities = 26/131 (19%), Positives = 41/131 (31%), Gaps = 25/131 (19%)

Query: 2   SNKGTELEYEKLSNLITAIILSNNSFV--------------------GEIPTSIANLKGL 41
           S     ++    +     + L N  F                     G   + + +L  L
Sbjct: 291 SVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEV-DLPSL 349

Query: 42  RNLDLSNNNLQ--GRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEFFDVSDNLL 99
             LDLS N L   G    S    T+++ +DLS N +   +      L  LE  D   + L
Sbjct: 350 EFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNL 408

Query: 100 TGPIPRGKQFD 110
              +     F 
Sbjct: 409 KQ-MSEFSVFL 418

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 48.6 bits (116), Expect = 4e-07
 Identities = 23/101 (22%), Positives = 42/101 (41%), Gaps = 7/101 (6%)

Query: 11  EKLSNLITAIILSNNSF-VGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLT----AI 65
             L  L   + +++N     ++P   +NL  L +LDLS+N +Q      L  L       
Sbjct: 121 GHLKTLKE-LNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLN 179

Query: 66  ESMDLSSNMLSGNIPQQLSELTSLEFFDVSDNLLTGPIPRG 106
            S+DLS N ++  I     +   L    + +N  +  + + 
Sbjct: 180 LSLDLSLNPMNF-IQPGAFKEIRLHKLTLRNNFDSLNVMKT 219

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 43.9 bits (104), Expect = 1e-05
 Identities = 28/117 (23%), Positives = 46/117 (39%), Gaps = 11/117 (9%)

Query: 12  KLSNLITAIILSNNSFVGEIPTSIANLKGLRN----LDLSNNNLQGRIPLSLSNLTAIES 67
            L+NL   + LS+N       T +  L  +      LDLS N +    P +   +  +  
Sbjct: 147 NLTNLEH-LDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LHK 204

Query: 68  MDLSSNMLSGNIPQQ-LSELTSLEFFDVSDNLLTGPIPRGKQFDTFGKSSFDGNPGL 123
           + L +N  S N+ +  +  L  LE       L+ G        + F KS+ +G   L
Sbjct: 205 LTLRNNFDSLNVMKTCIQGLAGLEV----HRLVLGEFRNEGNLEKFDKSALEGLCNL 257

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 43.5 bits (103), Expect = 2e-05
 Identities = 18/72 (25%), Positives = 35/72 (48%), Gaps = 1/72 (1%)

Query: 12  KLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLS 71
           +L NL T + LS        PT+  +L  L+ L++++N L+         LT+++ + L 
Sbjct: 468 ELRNL-TFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLH 526

Query: 72  SNMLSGNIPQQL 83
           +N    + P+  
Sbjct: 527 TNPWDCSCPRID 538

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 63.7 bits (156), Expect = 2e-12
 Identities = 20/90 (22%), Positives = 43/90 (47%), Gaps = 5/90 (5%)

Query: 11  EKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDL 70
           + L+ L   + + +N       + + NL  L +L L+NN L       +  LT + ++ L
Sbjct: 262 KDLTKL-KMLNVGSNQISD--ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFL 318

Query: 71  SSNMLSGNIPQQLSELTSLEFFDVSDNLLT 100
           S N ++   P  L+ L+ ++  D ++ ++ 
Sbjct: 319 SQNHITDIRP--LASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 62.6 bits (153), Expect = 6e-12
 Identities = 24/94 (25%), Positives = 45/94 (47%), Gaps = 5/94 (5%)

Query: 11  EKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDL 70
             LS L T + +  N        ++ +L  L+ L++ +N +   I   L+NL+ + S+ L
Sbjct: 240 ANLSQL-TWLEIGTNQI--SDINAVKDLTKLKMLNVGSNQISD-IS-VLNNLSQLNSLFL 294

Query: 71  SSNMLSGNIPQQLSELTSLEFFDVSDNLLTGPIP 104
           ++N L     + +  LT+L    +S N +T   P
Sbjct: 295 NNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP 328

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 61.8 bits (151), Expect = 1e-11
 Identities = 25/94 (26%), Positives = 46/94 (48%), Gaps = 6/94 (6%)

Query: 11  EKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDL 70
             L  L T + +  N       +++ NL  LR L L+ +N+    P  L+NLT + S++L
Sbjct: 85  SNLVKL-TNLYIGTNKI--TDISALQNLTNLRELYLNEDNISDISP--LANLTKMYSLNL 139

Query: 71  SSNMLSGNIPQQLSELTSLEFFDVSDNLLTGPIP 104
            +N    ++   LS +T L +  V+++ +    P
Sbjct: 140 GANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP 172

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 60.2 bits (147), Expect = 3e-11
 Identities = 24/94 (25%), Positives = 47/94 (50%), Gaps = 6/94 (6%)

Query: 11  EKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDL 70
             L+ +  ++ L  N  +    + ++N+ GL  L ++ + ++   P  ++NLT + S+ L
Sbjct: 129 ANLTKM-YSLNLGANHNLS-DLSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSL 184

Query: 71  SSNMLSGNIPQQLSELTSLEFFDVSDNLLTGPIP 104
           + N +    P  L+ LTSL +F    N +T   P
Sbjct: 185 NYNQIEDISP--LASLTSLHYFTAYVNQITDITP 216

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 59.5 bits (145), Expect = 6e-11
 Identities = 23/105 (21%), Positives = 49/105 (46%), Gaps = 8/105 (7%)

Query: 2   SNKGTELEY-EKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLS 60
            N+ T++     ++ L  ++ + NN      P  +ANL  L  L++  N +   I  ++ 
Sbjct: 208 VNQITDITPVANMTRL-NSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISD-IN-AVK 262

Query: 61  NLTAIESMDLSSNMLSGNIPQQLSELTSLEFFDVSDNLLTGPIPR 105
           +LT ++ +++ SN +S      L+ L+ L    +++N L      
Sbjct: 263 DLTKLKMLNVGSNQISD--ISVLNNLSQLNSLFLNNNQLGNEDME 305

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 59.1 bits (144), Expect = 8e-11
 Identities = 23/103 (22%), Positives = 49/103 (47%), Gaps = 8/103 (7%)

Query: 3   NKGTELEY-EKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSN 61
              T++   E+L ++ T ++++    V  I   I  L  L  L+L+ N +    P  LSN
Sbjct: 32  ASVTDVVTQEELESI-TKLVVAGEK-VASIQ-GIEYLTNLEYLNLNGNQITDISP--LSN 86

Query: 62  LTAIESMDLSSNMLSGNIPQQLSELTSLEFFDVSDNLLTGPIP 104
           L  + ++ + +N ++      L  LT+L    ++++ ++   P
Sbjct: 87  LVKLTNLYIGTNKIT--DISALQNLTNLRELYLNEDNISDISP 127

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 56.0 bits (136), Expect = 9e-10
 Identities = 21/94 (22%), Positives = 42/94 (44%), Gaps = 7/94 (7%)

Query: 11  EKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDL 70
             L++L        N      P  +AN+  L +L + NN +    P  L+NL+ +  +++
Sbjct: 196 ASLTSL-HYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEI 250

Query: 71  SSNMLSGNIPQQLSELTSLEFFDVSDNLLTGPIP 104
            +N +S      + +LT L+  +V  N ++    
Sbjct: 251 GTNQISD--INAVKDLTKLKMLNVGSNQISDISV 282

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 51.4 bits (124), Expect = 4e-08
 Identities = 14/87 (16%), Positives = 35/87 (40%), Gaps = 6/87 (6%)

Query: 18  TAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSG 77
             +       + +I    A+L       L   ++   +      L +I  + ++   ++ 
Sbjct: 3   ATLATLPAP-INQI-FPDADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVA- 57

Query: 78  NIPQQLSELTSLEFFDVSDNLLTGPIP 104
           +I   +  LT+LE+ +++ N +T   P
Sbjct: 58  SIQ-GIEYLTNLEYLNLNGNQITDISP 83

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 41.0 bits (97), Expect = 1e-04
 Identities = 9/61 (14%), Positives = 18/61 (29%), Gaps = 4/61 (6%)

Query: 40  GLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEFFDVSDNLL 99
           G   L      +    P   ++L       L    ++  +     EL S+    V+   +
Sbjct: 1   GAATLATLPAPINQIFP--DADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKV 56

Query: 100 T 100
            
Sbjct: 57  A 57

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 62.6 bits (152), Expect = 8e-12
 Identities = 26/99 (26%), Positives = 45/99 (45%), Gaps = 11/99 (11%)

Query: 2   SNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSN 61
           +N+ T L     S L   +I+S N     +P   + L   + L +S N L   +P+  S 
Sbjct: 210 NNRLTSLP-ALPSGL-KELIVSGNRL-TSLPVLPSEL---KELMVSGNRLT-SLPMLPSG 262

Query: 62  LTAIESMDLSSNMLSGNIPQQLSELTSLEFFDVSDNLLT 100
           L    S+ +  N L+  +P+ L  L+S    ++  N L+
Sbjct: 263 LL---SLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLS 297

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 51.4 bits (123), Expect = 4e-08
 Identities = 20/90 (22%), Positives = 29/90 (32%), Gaps = 13/90 (14%)

Query: 11  EKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDL 70
                L   + +S N     +P     L  L        +L    P   S L     + +
Sbjct: 78  ALPPEL-RTLEVSGNQLT-SLPVLPPGLLELSIFSNPLTHL----PALPSGLC---KLWI 128

Query: 71  SSNMLSGNIPQQLSELTSLEFFDVSDNLLT 100
             N L+ ++P     L  L    VSDN L 
Sbjct: 129 FGNQLT-SLPVLPPGLQEL---SVSDNQLA 154

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 50.7 bits (121), Expect = 9e-08
 Identities = 26/99 (26%), Positives = 39/99 (39%), Gaps = 14/99 (14%)

Query: 2   SNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSN 61
            N+   L     S L   +   NN     +P   + L   + L +S+N L   +P   S 
Sbjct: 150 DNQLASLPAL-PSEL-CKLWAYNNQLT-SLPMLPSGL---QELSVSDNQLA-SLPTLPSE 202

Query: 62  LTAIESMDLSSNMLSGNIPQQLSELTSLEFFDVSDNLLT 100
           L     +   +N L+ ++P   S L  L    VS N LT
Sbjct: 203 LY---KLWAYNNRLT-SLPALPSGLKEL---IVSGNRLT 234

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 44.5 bits (105), Expect = 1e-05
 Identities = 13/84 (15%), Positives = 27/84 (32%), Gaps = 20/84 (23%)

Query: 35  IANLKGLRNLDLSNNNLQGRIP---------LSLSN---------LTAIESMDLSSNMLS 76
                G   L++  + L   +P         L + +            + ++++S N L+
Sbjct: 36  ACLNNGNAVLNVGESGLT-TLPDCLPAHITTLVIPDNNLTSLPALPPELRTLEVSGNQLT 94

Query: 77  GNIPQQLSELTSLEFFDVSDNLLT 100
            ++P     L  L  F      L 
Sbjct: 95  -SLPVLPPGLLELSIFSNPLTHLP 117

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 40.3 bits (94), Expect = 2e-04
 Identities = 20/111 (18%), Positives = 36/111 (32%), Gaps = 4/111 (3%)

Query: 2   SNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSN 61
            N+ T L     S L  ++ +  N     +P S+ +L     ++L  N L  R   +L  
Sbjct: 250 GNRLTSLPML-PSGL-LSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALRE 306

Query: 62  LTAIESMDLSSNMLSGNIPQQLSELTSLEFFDVSDNLLTGPIPRGKQFDTF 112
           +T+                    E  +L     +D L+          D +
Sbjct: 307 ITSAPGYSGPIIRFDMAGASAPRETRALH-LAAADWLVPAREGEPAPADRW 356

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 62.2 bits (151), Expect = 8e-12
 Identities = 22/92 (23%), Positives = 44/92 (47%), Gaps = 2/92 (2%)

Query: 9   EYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESM 68
           E ++  N      ++++S    + +   +   ++ LDLS N L       L+  T +E +
Sbjct: 4   EIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELL 63

Query: 69  DLSSNMLSGNIPQQLSELTSLEFFDVSDNLLT 100
           +LSSN+L       L  L++L   D+++N + 
Sbjct: 64  NLSSNVLYE--TLDLESLSTLRTLDLNNNYVQ 93

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 59.1 bits (143), Expect = 1e-10
 Identities = 22/107 (20%), Positives = 41/107 (38%), Gaps = 7/107 (6%)

Query: 2   SNKGTELEYEKLSNLITA---IILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLS 58
            N+   + + +L+        + L  N    ++   +     L+ LDLS+N L   +   
Sbjct: 153 LNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQV-VFAKLKTLDLSSNKLA-FMGPE 209

Query: 59  LSNLTAIESMDLSSNMLSGNIPQQLSELTSLEFFDVSDNLLTGPIPR 105
             +   +  + L +N L   I + L    +LE FD+  N       R
Sbjct: 210 FQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLR 255

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 56.4 bits (136), Expect = 8e-10
 Identities = 16/74 (21%), Positives = 33/74 (44%)

Query: 31  IPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLE 90
           I     N    +   +++++L+  +     +   ++ +DLS N LS      L+  T LE
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 91  FFDVSDNLLTGPIP 104
             ++S N+L   + 
Sbjct: 62  LLNLSSNVLYETLD 75

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 55.2 bits (133), Expect = 2e-09
 Identities = 19/100 (19%), Positives = 42/100 (42%), Gaps = 7/100 (7%)

Query: 2   SNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSN 61
           +N   EL      ++   +  +NN+    +  S    +G +N+ L+NN +     L    
Sbjct: 89  NNYVQELL--VGPSI-ETLHAANNNI-SRVSCSR--GQGKKNIYLANNKITMLRDLDEGC 142

Query: 62  LTAIESMDLSSNMLSG-NIPQQLSELTSLEFFDVSDNLLT 100
            + ++ +DL  N +   N  +  +   +LE  ++  N + 
Sbjct: 143 RSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY 182

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 43.7 bits (103), Expect = 2e-05
 Identities = 16/91 (17%), Positives = 30/91 (32%), Gaps = 5/91 (5%)

Query: 11  EKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQ-GRIPLSLSNLTAIESMD 69
           +  + + T I L NN  V  I  ++   + L + DL  N    G +    S    +++  
Sbjct: 211 QSAAGV-TWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQT-- 266

Query: 70  LSSNMLSGNIPQQLSELTSLEFFDVSDNLLT 100
           ++   +     Q   E T             
Sbjct: 267 VAKQTVKKLTGQNEEECTVPTLGHYGAYCCE 297

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 39.1 bits (91), Expect = 6e-04
 Identities = 10/80 (12%), Positives = 20/80 (25%)

Query: 11  EKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDL 70
             L     A++    S    +     N    R +D      +  I        A  +++ 
Sbjct: 308 IALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQ 367

Query: 71  SSNMLSGNIPQQLSELTSLE 90
               L   +         L+
Sbjct: 368 KKKALDEQVSNGRRAHAELD 387

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 61.5 bits (150), Expect = 1e-11
 Identities = 20/88 (22%), Positives = 41/88 (46%), Gaps = 3/88 (3%)

Query: 13  LSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSS 72
            +       ++++S    + +   +   ++ LDLS N L       L+  T +E ++LSS
Sbjct: 9   GNRY-KIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSS 67

Query: 73  NMLSGNIPQQLSELTSLEFFDVSDNLLT 100
           N+L       L  L++L   D+++N + 
Sbjct: 68  NVLYE--TLDLESLSTLRTLDLNNNYVQ 93

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 60.8 bits (148), Expect = 2e-11
 Identities = 22/108 (20%), Positives = 39/108 (36%), Gaps = 9/108 (8%)

Query: 2   SNKGTELEYE----KLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPL 57
            N+   + +         L   + L  N    ++   +     L+ LDLS+N L   +  
Sbjct: 153 LNEIDTVNFAELAASSDTL-EHLNLQYNFIY-DVKGQV-VFAKLKTLDLSSNKLA-FMGP 208

Query: 58  SLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEFFDVSDNLLTGPIPR 105
              +   +  + L +N L   I + L    +LE FD+  N       R
Sbjct: 209 EFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLR 255

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 57.7 bits (140), Expect = 3e-10
 Identities = 16/74 (21%), Positives = 33/74 (44%)

Query: 31  IPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLE 90
           I     N    +   +++++L+  +     +   ++ +DLS N LS      L+  T LE
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 91  FFDVSDNLLTGPIP 104
             ++S N+L   + 
Sbjct: 62  LLNLSSNVLYETLD 75

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 55.8 bits (135), Expect = 1e-09
 Identities = 19/100 (19%), Positives = 42/100 (42%), Gaps = 7/100 (7%)

Query: 2   SNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSN 61
           +N   EL      ++   +  +NN+    +  S    +G +N+ L+NN +     L    
Sbjct: 89  NNYVQELL--VGPSI-ETLHAANNNI-SRVSCSR--GQGKKNIYLANNKITMLRDLDEGC 142

Query: 62  LTAIESMDLSSNMLSG-NIPQQLSELTSLEFFDVSDNLLT 100
            + ++ +DL  N +   N  +  +   +LE  ++  N + 
Sbjct: 143 RSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY 182

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 43.1 bits (102), Expect = 3e-05
 Identities = 15/96 (15%), Positives = 32/96 (33%), Gaps = 6/96 (6%)

Query: 11  EKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQ-GRIPLSLSNLTAIESMD 69
           +  + +   I L NN  V  I  ++   + L + DL  N    G +    S    ++++ 
Sbjct: 211 QSAAGVTW-ISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVA 268

Query: 70  LSSNMLSGNIPQQLSELTSLEFFDVSDNLLTGPIPR 105
             +      +  Q  E  ++             +P 
Sbjct: 269 KQTVK---KLTGQNEEECTVPTLGHYGAYCCEDLPA 301

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 61.1 bits (149), Expect = 2e-11
 Identities = 26/94 (27%), Positives = 44/94 (46%), Gaps = 7/94 (7%)

Query: 11  EKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDL 70
             L+ L T + L+ N      P  I+NLK L  L L  NN+    P  +S+LT ++ +  
Sbjct: 284 AGLTAL-TNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFF 338

Query: 71  SSNMLSGNIPQQLSELTSLEFFDVSDNLLTGPIP 104
            +N +S      L+ LT++ +     N ++   P
Sbjct: 339 YNNKVSD--VSSLANLTNINWLSAGHNQISDLTP 370

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 60.7 bits (148), Expect = 3e-11
 Identities = 30/104 (28%), Positives = 54/104 (51%), Gaps = 8/104 (7%)

Query: 2   SNKGTELEY-EKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLS 60
           +N+ +++     L+NL   + L+ N        ++A+L  L +LDL+NN +    P  LS
Sbjct: 208 NNQISDITPLGILTNL-DELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP--LS 262

Query: 61  NLTAIESMDLSSNMLSGNIPQQLSELTSLEFFDVSDNLLTGPIP 104
            LT +  + L +N +S   P  L+ LT+L   ++++N L    P
Sbjct: 263 GLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP 304

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 60.4 bits (147), Expect = 3e-11
 Identities = 27/104 (25%), Positives = 50/104 (48%), Gaps = 8/104 (7%)

Query: 2   SNKGTELEY-EKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLS 60
            N+ T+L+    L+ L   + +S+N       + +A L  L +L  +NN +    P  L 
Sbjct: 164 GNQVTDLKPLANLTTL-ERLDISSNKV--SDISVLAKLTNLESLIATNNQISDITP--LG 218

Query: 61  NLTAIESMDLSSNMLSGNIPQQLSELTSLEFFDVSDNLLTGPIP 104
            LT ++ + L+ N L       L+ LT+L   D+++N ++   P
Sbjct: 219 ILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISNLAP 260

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 60.4 bits (147), Expect = 4e-11
 Identities = 27/94 (28%), Positives = 42/94 (44%), Gaps = 7/94 (7%)

Query: 11  EKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDL 70
             L+ L T + L  N      P  +A L  L NL+L+ N L+   P  +SNL  +  + L
Sbjct: 262 SGLTKL-TELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTL 316

Query: 71  SSNMLSGNIPQQLSELTSLEFFDVSDNLLTGPIP 104
             N +S   P  +S LT L+     +N ++    
Sbjct: 317 YFNNISDISP--VSSLTKLQRLFFYNNKVSDVSS 348

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 60.4 bits (147), Expect = 4e-11
 Identities = 22/103 (21%), Positives = 43/103 (41%), Gaps = 6/103 (5%)

Query: 2   SNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSN 61
               T+   +   + +T +         +    +  L  L  ++ SNN L    P  L N
Sbjct: 33  KTNVTDTVSQTDLDQVTTLQADRLGI--KSIDGVEYLNNLTQINFSNNQLTDITP--LKN 88

Query: 62  LTAIESMDLSSNMLSGNIPQQLSELTSLEFFDVSDNLLTGPIP 104
           LT +  + +++N ++   P  L+ LT+L    + +N +T   P
Sbjct: 89  LTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP 129

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 59.6 bits (145), Expect = 7e-11
 Identities = 27/104 (25%), Positives = 44/104 (42%), Gaps = 8/104 (7%)

Query: 2   SNKGTELEY-EKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLS 60
            N+  ++     L NL T + L  N+     P  +++L  L+ L   NN +      SL+
Sbjct: 296 ENQLEDISPISNLKNL-TYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSD--VSSLA 350

Query: 61  NLTAIESMDLSSNMLSGNIPQQLSELTSLEFFDVSDNLLTGPIP 104
           NLT I  +    N +S   P  L+ LT +    ++D   T    
Sbjct: 351 NLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPV 392

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 54.6 bits (132), Expect = 4e-09
 Identities = 20/103 (19%), Positives = 37/103 (35%), Gaps = 6/103 (5%)

Query: 2   SNKGTELE-YEKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLS 60
            N  +++     L+ L   +   NN       +S+ANL  +  L   +N +    PL+  
Sbjct: 318 FNNISDISPVSSLTKL-QRLFFYNNKV--SDVSSLANLTNINWLSAGHNQISDLTPLA-- 372

Query: 61  NLTAIESMDLSSNMLSGNIPQQLSELTSLEFFDVSDNLLTGPI 103
           NLT I  + L+    +       + ++           L  P 
Sbjct: 373 NLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPA 415

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 54.2 bits (131), Expect = 5e-09
 Identities = 15/89 (16%), Positives = 32/89 (35%), Gaps = 6/89 (6%)

Query: 16  LITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNML 75
           L +A I  +   + +I  +   L       L   N+   +    ++L  + ++      +
Sbjct: 3   LGSATITQDTP-INQI-FTDTALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGI 58

Query: 76  SGNIPQQLSELTSLEFFDVSDNLLTGPIP 104
                  +  L +L   + S+N LT   P
Sbjct: 59  K--SIDGVEYLNNLTQINFSNNQLTDITP 85

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 52.3 bits (126), Expect = 2e-08
 Identities = 30/90 (33%), Positives = 45/90 (50%), Gaps = 7/90 (7%)

Query: 11  EKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDL 70
           + L+ L+  I+++NN      P  +ANL  L  L L NN +    P  L NLT +  ++L
Sbjct: 87  KNLTKLVD-ILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLEL 141

Query: 71  SSNMLSGNIPQQLSELTSLEFFDVSDNLLT 100
           SSN +S      LS LTSL+     + +  
Sbjct: 142 SSNTISD--ISALSGLTSLQQLSFGNQVTD 169

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 48.4 bits (116), Expect = 5e-07
 Identities = 29/97 (29%), Positives = 49/97 (50%), Gaps = 14/97 (14%)

Query: 11  EKLSNLITAIILSNNSFVGEIPTSIANLKGLRNL---DLSNNNLQGRIPLSLSNLTAIES 67
           + L+NL   + LS+N+      + I+ L GL +L      N          L+NLT +E 
Sbjct: 131 KNLTNL-NRLELSSNTI-----SDISALSGLTSLQQLSFGNQVTD---LKPLANLTTLER 181

Query: 68  MDLSSNMLSGNIPQQLSELTSLEFFDVSDNLLTGPIP 104
           +D+SSN +S      L++LT+LE    ++N ++   P
Sbjct: 182 LDISSNKVSD--ISVLAKLTNLESLIATNNQISDITP 216

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 60.2 bits (146), Expect = 5e-11
 Identities = 24/90 (26%), Positives = 37/90 (41%), Gaps = 1/90 (1%)

Query: 11  EKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDL 70
           E L +L   + L+ N        +   L  L+ L+LS N L      +   L  +  +DL
Sbjct: 287 ETLKDLKV-LNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDL 345

Query: 71  SSNMLSGNIPQQLSELTSLEFFDVSDNLLT 100
             N ++    Q    L  L+  D+ DN LT
Sbjct: 346 QKNHIAIIQDQTFKFLEKLQTLDLRDNALT 375

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 58.7 bits (142), Expect = 2e-10
 Identities = 21/110 (19%), Positives = 36/110 (32%), Gaps = 5/110 (4%)

Query: 2   SNKGTELEYEKLSNL--ITAIILSNNSFVGEI-PTSIANLKGLRNLDLSNNNLQGRIPLS 58
            N    +       L  +  + L +      I   +  NL  LR LDL ++ +    P +
Sbjct: 33  FNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDA 92

Query: 59  LSNLTAIESMDLSSNMLSGNI--PQQLSELTSLEFFDVSDNLLTGPIPRG 106
              L  +  + L    LS  +        L +L   D+S N +       
Sbjct: 93  FQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHP 142

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 56.7 bits (137), Expect = 8e-10
 Identities = 17/102 (16%), Positives = 38/102 (37%), Gaps = 4/102 (3%)

Query: 3   NKGTELEYEKLSNL----ITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLS 58
           +   + +    + L    +  + LS+             LK L+ L+L+ N +      +
Sbjct: 250 HNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEA 309

Query: 59  LSNLTAIESMDLSSNMLSGNIPQQLSELTSLEFFDVSDNLLT 100
              L  ++ ++LS N+L          L  + + D+  N + 
Sbjct: 310 FYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIA 351

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 56.0 bits (135), Expect = 1e-09
 Identities = 31/117 (26%), Positives = 46/117 (39%), Gaps = 10/117 (8%)

Query: 13  LSNLITAIILSNNSFVGEIPTSI-----ANLKGLRNLDLSNNNLQGRIPLSLSNLTAIES 67
             +L   + L  N       T +       L  L+ L L++N L    P   S+LTA+  
Sbjct: 450 NPSLEQ-LFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRG 508

Query: 68  MDLSSNMLSGNIPQQLSELTSLEFFDVSDNLLTGPIPRGKQFDTFGKSSFDGNPGLC 124
           + L+SN L+      L    +LE  D+S N L  P P    F +        N  +C
Sbjct: 509 LSLNSNRLTVLSHNDL--PANLEILDISRNQLLAPNPD--VFVSLSVLDITHNKFIC 561

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 55.6 bits (134), Expect = 2e-09
 Identities = 20/98 (20%), Positives = 37/98 (37%), Gaps = 2/98 (2%)

Query: 13  LSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRI-PLSLSNLTAIESMDLS 71
           L+     ++LS N       +S   L+ L+ L+L +      I   +  NL  +  +DL 
Sbjct: 23  LNTT-ERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLG 81

Query: 72  SNMLSGNIPQQLSELTSLEFFDVSDNLLTGPIPRGKQF 109
           S+ +    P     L  L    +    L+  + +   F
Sbjct: 82  SSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYF 119

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 54.8 bits (132), Expect = 3e-09
 Identities = 24/95 (25%), Positives = 40/95 (42%), Gaps = 7/95 (7%)

Query: 12  KLSNLITAIILSNNSFVG-EIPTSIANLKGLRNLDLSNNNLQGRIPLSL-----SNLTAI 65
           ++ +L   +IL+ N F       + +    L  L L  N LQ      L       L+ +
Sbjct: 424 RVPHL-QILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHL 482

Query: 66  ESMDLSSNMLSGNIPQQLSELTSLEFFDVSDNLLT 100
           + + L+ N L+   P   S LT+L    ++ N LT
Sbjct: 483 QVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLT 517

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 49.8 bits (119), Expect = 2e-07
 Identities = 18/105 (17%), Positives = 34/105 (32%), Gaps = 16/105 (15%)

Query: 22  LSNNSFVG--EIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNI 79
           ++   F    ++P     L     L LS N ++     S   L  ++ ++L S      I
Sbjct: 8   IAFYRFCNLTQVPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTI 64

Query: 80  -PQQLSELTSLEFFDVSDNLLTGPIPRGKQFDTFGKSSFDGNPGL 123
             +    L +L   D+  + +                +F G   L
Sbjct: 65  DKEAFRNLPNLRILDLGSSKIY----------FLHPDAFQGLFHL 99

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 47.9 bits (114), Expect = 7e-07
 Identities = 24/101 (23%), Positives = 36/101 (35%), Gaps = 10/101 (9%)

Query: 13  LSNLITAIILSNNSFVG-EIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTA--IESMD 69
           L  L   + LS N      +  S   L  L+++D S+N +       L  L    +    
Sbjct: 122 LKALTR-LDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFS 180

Query: 70  LSSNMLSGNIPQQLSEL------TSLEFFDVSDNLLTGPIP 104
           L++N L   +     +         LE  DVS N  T  I 
Sbjct: 181 LAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDIT 221

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 45.6 bits (108), Expect = 5e-06
 Identities = 17/102 (16%), Positives = 38/102 (37%), Gaps = 5/102 (4%)

Query: 4   KGTELEYEKLS-NLITAIILSN--NSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLS 60
           +   LE   +S N  T  I  N  N+       S+     +       +N++     + +
Sbjct: 202 RNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFA 261

Query: 61  NL--TAIESMDLSSNMLSGNIPQQLSELTSLEFFDVSDNLLT 100
            L  +++  +DLS   +     +    L  L+  +++ N + 
Sbjct: 262 GLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKIN 303

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 42.9 bits (101), Expect = 4e-05
 Identities = 27/120 (22%), Positives = 44/120 (36%), Gaps = 18/120 (15%)

Query: 6   TELEYEKLS-NLITAI---------ILSNNSFVGEIPTSIANLK-GLRNLDLSNNNLQG- 53
            +L+   L  N +T I          LS N        ++  +      + LS N L+  
Sbjct: 362 EKLQTLDLRDNALTTIHFIPSIPDIFLSGNKL-----VTLPKINLTANLIHLSENRLENL 416

Query: 54  RIPLSLSNLTAIESMDLSSNMLSGNIPQQL-SELTSLEFFDVSDNLLTGPIPRGKQFDTF 112
            I   L  +  ++ + L+ N  S     Q  SE  SLE   + +N+L         +D F
Sbjct: 417 DILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVF 476

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 60.1 bits (146), Expect = 5e-11
 Identities = 20/89 (22%), Positives = 37/89 (41%), Gaps = 5/89 (5%)

Query: 13  LSNLITAIILSNNSFVGEIPTSI-ANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLS 71
              L+  + LS N    +I       ++ L  L +SNN L   + L    +  ++ +DLS
Sbjct: 247 YPGLVE-VDLSYNELE-KIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLS 303

Query: 72  SNMLSGNIPQQLSELTSLEFFDVSDNLLT 100
            N L  ++ +   +   LE   +  N + 
Sbjct: 304 HNHLL-HVERNQPQFDRLENLYLDHNSIV 331

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 57.0 bits (138), Expect = 5e-10
 Identities = 22/99 (22%), Positives = 41/99 (41%), Gaps = 4/99 (4%)

Query: 2   SNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSN 61
            N    +       L T + L +N+   +    + N  GL  +DLS N L+  +      
Sbjct: 214 HNSINVVRGPVNVEL-TILKLQHNNLT-DTAW-LLNYPGLVEVDLSYNELEKIMYHPFVK 270

Query: 62  LTAIESMDLSSNMLSGNIPQQLSELTSLEFFDVSDNLLT 100
           +  +E + +S+N L   +      + +L+  D+S N L 
Sbjct: 271 MQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL 308

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 50.4 bits (121), Expect = 8e-08
 Identities = 28/118 (23%), Positives = 47/118 (39%), Gaps = 20/118 (16%)

Query: 2   SNKGTELEYEKLSNL--ITAIILSNNSFVGEIPTSI-ANLKGLRNLDLSNNNLQGRIPLS 58
            N    L      N+  +T ++L  N     +P  I  N   L  L +SNNNL+     +
Sbjct: 102 FNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDT 160

Query: 59  LSNLTAIESMDLSSNM----------------LSGNIPQQLSELTSLEFFDVSDNLLT 100
               T+++++ LSSN                 +S N+   L+   ++E  D S N + 
Sbjct: 161 FQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSIN 218

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 48.9 bits (117), Expect = 3e-07
 Identities = 22/103 (21%), Positives = 40/103 (38%), Gaps = 6/103 (5%)

Query: 2   SNKGTELEYEKLSNL--ITAIILSNNSFVGEIPTSI-ANLKGLRNLDLSNNNLQGRIPLS 58
             +  E++    +    I  + +  N+    +P  +  N+  L  L L  N+L       
Sbjct: 78  DLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLSSLPRGI 136

Query: 59  LSNLTAIESMDLSSNMLSGNIPQQ-LSELTSLEFFDVSDNLLT 100
             N   + ++ +S+N L   I        TSL+   +S N LT
Sbjct: 137 FHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLT 178

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 46.6 bits (111), Expect = 2e-06
 Identities = 7/80 (8%), Positives = 26/80 (32%), Gaps = 2/80 (2%)

Query: 22  LSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQ 81
           +   +           L   + +   N+ ++      L +   +E ++L+   +   I  
Sbjct: 28  IDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE-EIDT 86

Query: 82  Q-LSELTSLEFFDVSDNLLT 100
              +   +++   +  N + 
Sbjct: 87  YAFAYAHTIQKLYMGFNAIR 106

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 40.8 bits (96), Expect = 1e-04
 Identities = 5/70 (7%), Positives = 21/70 (30%)

Query: 31  IPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLE 90
           I +++       ++ +               L   + +   ++ +       L     +E
Sbjct: 13  IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVE 72

Query: 91  FFDVSDNLLT 100
             +++D  + 
Sbjct: 73  LLNLNDLQIE 82

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 40.0 bits (94), Expect = 3e-04
 Identities = 16/82 (19%), Positives = 34/82 (41%), Gaps = 9/82 (10%)

Query: 13  LSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSS 72
           +  L   + LS+N  +  +  +      L NL L +N++     L LS    ++++ LS 
Sbjct: 294 IPTL-KVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV---TLKLSTHHTLKNLTLSH 348

Query: 73  NMLSGN----IPQQLSELTSLE 90
           N    N    + + ++     +
Sbjct: 349 NDWDCNSLRALFRNVARPAVDD 370

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 58.6 bits (141), Expect = 2e-10
 Identities = 26/102 (25%), Positives = 46/102 (45%), Gaps = 8/102 (7%)

Query: 2   SNKGTELEY-EKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLS 60
               T L + E+L  + T + LS+N     +P ++A L+ L  L  S+N L+  +   ++
Sbjct: 450 HKDLTVLCHLEQLLLV-THLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVD-GVA 505

Query: 61  NLTAIESMDLSSNMLSGNIP--QQLSELTSLEFFDVSDNLLT 100
           NL  ++ + L +N L       Q L     L   ++  N L 
Sbjct: 506 NLPRLQELLLCNNRLQ-QSAAIQPLVSCPRLVLLNLQGNSLC 546

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 51.3 bits (122), Expect = 6e-08
 Identities = 24/97 (24%), Positives = 37/97 (38%), Gaps = 10/97 (10%)

Query: 11  EKLSNLITAIIL-------SNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLT 63
           +  S L     +         + F+ E          +R L L++ +L   +   L  L 
Sbjct: 406 QYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLT-VLC-HLEQLL 463

Query: 64  AIESMDLSSNMLSGNIPQQLSELTSLEFFDVSDNLLT 100
            +  +DLS N L   +P  L+ L  LE    SDN L 
Sbjct: 464 LVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE 499

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 58.4 bits (141), Expect = 2e-10
 Identities = 19/88 (21%), Positives = 36/88 (40%), Gaps = 3/88 (3%)

Query: 13  LSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSS 72
              L+  + LS N     +      ++ L  L +SNN L   + L    +  ++ +DLS 
Sbjct: 253 YPGLVE-VDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSH 310

Query: 73  NMLSGNIPQQLSELTSLEFFDVSDNLLT 100
           N L  ++ +   +   LE   +  N + 
Sbjct: 311 NHLL-HVERNQPQFDRLENLYLDHNSIV 337

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 56.1 bits (135), Expect = 1e-09
 Identities = 22/99 (22%), Positives = 41/99 (41%), Gaps = 4/99 (4%)

Query: 2   SNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSN 61
            N    +       L T + L +N+   +    + N  GL  +DLS N L+  +      
Sbjct: 220 HNSINVVRGPVNVEL-TILKLQHNNLT-DTAW-LLNYPGLVEVDLSYNELEKIMYHPFVK 276

Query: 62  LTAIESMDLSSNMLSGNIPQQLSELTSLEFFDVSDNLLT 100
           +  +E + +S+N L   +      + +L+  D+S N L 
Sbjct: 277 MQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL 314

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 48.8 bits (116), Expect = 4e-07
 Identities = 26/102 (25%), Positives = 44/102 (43%), Gaps = 12/102 (11%)

Query: 2   SNKGTELEYEKLSNL--ITAIILSNNSFVGEIPTSI-ANLKGLRNLDLSNNNLQGRIPLS 58
            N  + L      N   +T + +SNN+    I          L+NL LS+N L     + 
Sbjct: 132 RNDLSSLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLTH---VD 187

Query: 59  LSNLTAIESMDLSSNMLSGNIPQQLSELTSLEFFDVSDNLLT 100
           LS + ++   ++S N+LS      L+   ++E  D S N + 
Sbjct: 188 LSLIPSLFHANVSYNLLS-----TLAIPIAVEELDASHNSIN 224

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 48.4 bits (115), Expect = 5e-07
 Identities = 22/102 (21%), Positives = 38/102 (37%), Gaps = 4/102 (3%)

Query: 2   SNKGTELEYEKLSNL--ITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSL 59
             +  E++    +    I  + +  N+     P    N+  L  L L  N+L        
Sbjct: 84  DLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIF 143

Query: 60  SNLTAIESMDLSSNMLSGNIPQQ-LSELTSLEFFDVSDNLLT 100
            N   + ++ +S+N L   I        TSL+   +S N LT
Sbjct: 144 HNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLT 184

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 48.0 bits (114), Expect = 6e-07
 Identities = 22/99 (22%), Positives = 39/99 (39%), Gaps = 11/99 (11%)

Query: 2   SNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSN 61
           SN+ T ++   + +L     +S N       +++A    +  LD S+N++          
Sbjct: 180 SNRLTHVDLSLIPSL-FHANVSYNLL-----STLAIPIAVEELDASHNSINVVRGPVNVE 233

Query: 62  LTAIESMDLSSNMLSGNIPQQLSELTSLEFFDVSDNLLT 100
           LT    + L  N L+ +    L     L   D+S N L 
Sbjct: 234 LT---ILKLQHNNLT-DTA-WLLNYPGLVEVDLSYNELE 267

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 46.1 bits (109), Expect = 3e-06
 Identities = 6/64 (9%), Positives = 23/64 (35%)

Query: 37  NLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEFFDVSD 96
            L   + +   N+ ++      L +   +E ++L+   +        +   +++   +  
Sbjct: 49  TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGF 108

Query: 97  NLLT 100
           N + 
Sbjct: 109 NAIR 112

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 39.5 bits (92), Expect = 4e-04
 Identities = 16/82 (19%), Positives = 34/82 (41%), Gaps = 9/82 (10%)

Query: 13  LSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSS 72
           +  L   + LS+N  +  +  +      L NL L +N++     L LS    ++++ LS 
Sbjct: 300 IPTL-KVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV---TLKLSTHHTLKNLTLSH 354

Query: 73  NMLSGN----IPQQLSELTSLE 90
           N    N    + + ++     +
Sbjct: 355 NDWDCNSLRALFRNVARPAVDD 376

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 39.1 bits (91), Expect = 6e-04
 Identities = 5/88 (5%), Positives = 23/88 (26%)

Query: 13  LSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSS 72
           +       +         I +++       ++ +               L   + +   +
Sbjct: 1   VGGQQRYNVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKN 60

Query: 73  NMLSGNIPQQLSELTSLEFFDVSDNLLT 100
           + +       L     +E  +++D  + 
Sbjct: 61  STMRKLPAALLDSFRQVELLNLNDLQIE 88

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 56.2 bits (136), Expect = 8e-10
 Identities = 28/119 (23%), Positives = 49/119 (41%), Gaps = 8/119 (6%)

Query: 11  EKLSNLITAIILSNNSFVGEIPTSI-ANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMD 69
             LS+L   + ++ NSF       I   L+ L  LDLS   L+   P + ++L++++ ++
Sbjct: 147 NGLSSL-EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 205

Query: 70  LSSNMLSGNIPQQLSELTSLEFFDVSDNLLTGPIPRGKQFDTFGKS----SFDGNPGLC 124
           +S N            L SL+  D S N +     +  +   F  S    +   N   C
Sbjct: 206 MSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMT-SKKQ-ELQHFPSSLAFLNLTQNDFAC 262

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 51.9 bits (125), Expect = 2e-08
 Identities = 21/86 (24%), Positives = 32/86 (37%), Gaps = 3/86 (3%)

Query: 17  ITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGR--IPLSLSNLTAIESMDLSSNM 74
            T + L +N            L  L  L LS+N L  +     S    T+++ +DLS N 
Sbjct: 30  ATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG 89

Query: 75  LSGNIPQQLSELTSLEFFDVSDNLLT 100
           +   +      L  LE  D   + L 
Sbjct: 90  VI-TMSSNFLGLEQLEHLDFQHSNLK 114

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 48.5 bits (116), Expect = 3e-07
 Identities = 19/98 (19%), Positives = 42/98 (42%), Gaps = 4/98 (4%)

Query: 11  EKLSNLITAIILSNNSFVGEIPTSI-ANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMD 69
             L  L   +   +++       S+  +L+ L  LD+S+ + +       + L+++E + 
Sbjct: 98  LGLEQL-EHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLK 156

Query: 70  LSSN-MLSGNIPQQLSELTSLEFFDVSDNLLTGPIPRG 106
           ++ N      +P   +EL +L F D+S   L   +   
Sbjct: 157 MAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQ-LSPT 193

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 46.2 bits (110), Expect = 2e-06
 Identities = 26/91 (28%), Positives = 38/91 (41%), Gaps = 6/91 (6%)

Query: 18  TAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLS- 76
           T I  ++      +PT I        L+L +N LQ         LT +  + LSSN LS 
Sbjct: 10  TEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSF 66

Query: 77  -GNIPQQLSELTSLEFFDVSDNLLTGPIPRG 106
            G   Q     TSL++ D+S N +   +   
Sbjct: 67  KGCCSQSDFGTTSLKYLDLSFNGVIT-MSSN 96

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 56.7 bits (137), Expect = 9e-10
 Identities = 24/90 (26%), Positives = 41/90 (45%), Gaps = 7/90 (7%)

Query: 13  LSNLITAIILSNN--SFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDL 70
             +L T ++LS N    + +    +  LK L +LD+S N     +P S      +  ++L
Sbjct: 360 WPSLQT-LVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNL 417

Query: 71  SSNMLSGNIPQQLSELTSLEFFDVSDNLLT 100
           SS  +   +   +    +LE  DVS+N L 
Sbjct: 418 SSTGIR-VVKTCI--PQTLEVLDVSNNNLD 444

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 55.1 bits (133), Expect = 3e-09
 Identities = 20/99 (20%), Positives = 42/99 (42%), Gaps = 3/99 (3%)

Query: 13  LSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSS 72
           L+  + ++ LS N         +     L+ L L ++ +      +  +L ++E +DLS 
Sbjct: 24  LTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSD 83

Query: 73  NMLSGNIPQQ-LSELTSLEFFDVSDNLLTGPIPRGKQFD 110
           N LS ++       L+SL++ ++  N     +     F 
Sbjct: 84  NHLS-SLSSSWFGPLSSLKYLNLMGNPYQT-LGVTSLFP 120

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 54.7 bits (132), Expect = 3e-09
 Identities = 16/103 (15%), Positives = 36/103 (34%), Gaps = 4/103 (3%)

Query: 2   SNKGTELEYEKLSNL--ITAIILSNNSFVG-EIPTSIANLKGLRNLDLSNNNLQGRIP-L 57
            N  + L       L  +  + L  N +    + +   NL  L+ L + N      I  +
Sbjct: 83  DNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRI 142

Query: 58  SLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEFFDVSDNLLT 100
             + LT++  +++ +  L     Q L  +  +    +  +   
Sbjct: 143 DFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA 185

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 54.0 bits (130), Expect = 7e-09
 Identities = 22/108 (20%), Positives = 44/108 (40%), Gaps = 3/108 (2%)

Query: 2   SNKGTELEYEKLSNL--ITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSL 59
            NK T + +  L     +  +IL ++        +  +L  L +LDLS+N+L        
Sbjct: 35  FNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWF 94

Query: 60  SNLTAIESMDLSSNMLSG-NIPQQLSELTSLEFFDVSDNLLTGPIPRG 106
             L++++ ++L  N      +      LT+L+   + +      I R 
Sbjct: 95  GPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRI 142

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 53.6 bits (129), Expect = 9e-09
 Identities = 24/89 (26%), Positives = 43/89 (48%), Gaps = 9/89 (10%)

Query: 12  KLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLS 71
            L NL T++ +S N+F   +P S    + +R L+LS+  ++  +   +     +E +D+S
Sbjct: 385 TLKNL-TSLDISRNTF-HPMPDSCQWPEKMRFLNLSSTGIR-VVKTCI--PQTLEVLDVS 439

Query: 72  SNMLSGNIPQQLSELTSLEFFDVSDNLLT 100
           +N L  +    L  L  L    +S N L 
Sbjct: 440 NNNLD-SFSLFLPRLQEL---YISRNKLK 464

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 53.2 bits (128), Expect = 1e-08
 Identities = 20/91 (21%), Positives = 38/91 (41%), Gaps = 2/91 (2%)

Query: 12  KLSNLITAIILSNNSFVGEIP-TSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDL 70
            L+NL T + + N     EI     A L  L  L++   +L+     SL ++  I  + L
Sbjct: 121 NLTNLQT-LRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTL 179

Query: 71  SSNMLSGNIPQQLSELTSLEFFDVSDNLLTG 101
             +  +  +      L+S+ + ++ D  L  
Sbjct: 180 HLSESAFLLEIFADILSSVRYLELRDTNLAR 210

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 52.4 bits (126), Expect = 2e-08
 Identities = 14/82 (17%), Positives = 34/82 (41%), Gaps = 3/82 (3%)

Query: 22  LSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQ 81
           +       ++ T  + L+ ++ + + N+ +         +L ++E +DLS N++     +
Sbjct: 293 IPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLK 352

Query: 82  Q---LSELTSLEFFDVSDNLLT 100
                    SL+   +S N L 
Sbjct: 353 NSACKGAWPSLQTLVLSQNHLR 374

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 50.9 bits (122), Expect = 7e-08
 Identities = 22/96 (22%), Positives = 35/96 (36%), Gaps = 7/96 (7%)

Query: 2   SNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSN 61
           S     ++      L   + +SNN+           L  L+ L +S N L+  +P   S 
Sbjct: 419 STGIRVVKTCIPQTL-EVLDVSNNNL-DSFS---LFLPRLQELYISRNKLK-TLP-DASL 471

Query: 62  LTAIESMDLSSNMLSGNIPQQLSELTSLEFFDVSDN 97
              +  M +S N L          LTSL+   +  N
Sbjct: 472 FPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTN 507

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 45.1 bits (107), Expect = 6e-06
 Identities = 10/90 (11%), Positives = 30/90 (33%), Gaps = 1/90 (1%)

Query: 11  EKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDL 70
             L++L   + +   S       S+ +++ + +L L  +     + +    L+++  ++L
Sbjct: 145 AGLTSL-NELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLEL 203

Query: 71  SSNMLSGNIPQQLSELTSLEFFDVSDNLLT 100
               L+      L                +
Sbjct: 204 RDTNLARFQFSPLPVDEVSSPMKKLAFRGS 233

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 55.0 bits (133), Expect = 2e-09
 Identities = 24/100 (24%), Positives = 40/100 (40%), Gaps = 4/100 (4%)

Query: 2   SNKGTELEYEKLSNLITAIILSNNSFVGEIPT-SIANLKGLRNLDLSNNNLQGRIPLSLS 60
             K T +  +    L   + L +N     I    +     L  L L +N ++     SLS
Sbjct: 181 EAKLTGIPKDLPETL-NELHLDHNKIQ-AIELEDLLRYSKLYRLGLGHNQIRMIENGSLS 238

Query: 61  NLTAIESMDLSSNMLSGNIPQQLSELTSLEFFDVSDNLLT 100
            L  +  + L +N LS  +P  L +L  L+   +  N +T
Sbjct: 239 FLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNIT 277

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 45.8 bits (109), Expect = 3e-06
 Identities = 20/89 (22%), Positives = 34/89 (38%), Gaps = 4/89 (4%)

Query: 18  TAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSG 77
             +  S+      +P  I+       LDL NN++          L  + ++ L +N +S 
Sbjct: 36  RVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISK 92

Query: 78  NIPQQLSELTSLEFFDVSDNLLTGPIPRG 106
              +  S L  L+   +S N L   IP  
Sbjct: 93  IHEKAFSPLRKLQKLYISKNHLVE-IPPN 120

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 44.2 bits (105), Expect = 9e-06
 Identities = 22/97 (22%), Positives = 40/97 (41%), Gaps = 6/97 (6%)

Query: 11  EKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDL 70
             L  L   + +S N  V EIP ++     L  L + +N ++       S L  +  +++
Sbjct: 99  SPLRKLQK-LYISKNHLV-EIPPNL--PSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEM 154

Query: 71  SSNML-SGNIPQQLSELTSLEFFDVSDNLLTGPIPRG 106
             N L +        +   L +  +S+  LTG IP+ 
Sbjct: 155 GGNPLENSGFEPGAFDGLKLNYLRISEAKLTG-IPKD 190

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 40.4 bits (95), Expect = 2e-04
 Identities = 19/94 (20%), Positives = 29/94 (30%), Gaps = 15/94 (15%)

Query: 14  SNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSN 73
            N +        +F          LK L  L +S   L   IP  L     +  + L  N
Sbjct: 156 GNPLENSGFEPGAF--------DGLK-LNYLRISEAKLT-GIPKDL--PETLNELHLDHN 203

Query: 74  MLSGNIPQQ-LSELTSLEFFDVSDNLLTGPIPRG 106
            +   I  + L   + L    +  N +   I  G
Sbjct: 204 KIQ-AIELEDLLRYSKLYRLGLGHNQIRM-IENG 235

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 54.6 bits (132), Expect = 4e-09
 Identities = 25/90 (27%), Positives = 41/90 (45%), Gaps = 9/90 (10%)

Query: 11  EKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDL 70
           +   +L   I   NN    E+P  + NL  L  +   NN+L+ ++P    +L   ES+  
Sbjct: 170 DLPPSL-EFIAAGNNQLE-ELP-ELQNLPFLTAIYADNNSLK-KLPDLPLSL---ESIVA 222

Query: 71  SSNMLSGNIPQQLSELTSLEFFDVSDNLLT 100
            +N+L   +P +L  L  L      +NLL 
Sbjct: 223 GNNILE-ELP-ELQNLPFLTTIYADNNLLK 250

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 54.2 bits (131), Expect = 4e-09
 Identities = 24/118 (20%), Positives = 43/118 (36%), Gaps = 21/118 (17%)

Query: 2   SNKGTEL--EYEKLSNLITAIILSNNSFVGEIPTSIANL-------------KGLRNLDL 46
           S+  TE+  E E + +  T    + + +    P                   +    L+L
Sbjct: 20  SSNLTEMPVEAENVKSK-TEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELEL 78

Query: 47  SNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEFFDVSDNLLTGPIP 104
           +N  L   +P    +L   ES+  S N L+  +P+    L SL   + +   L+   P
Sbjct: 79  NNLGLS-SLPELPPHL---ESLVASCNSLT-ELPELPQSLKSLLVDNNNLKALSDLPP 131

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 52.3 bits (126), Expect = 2e-08
 Identities = 25/101 (24%), Positives = 43/101 (42%), Gaps = 12/101 (11%)

Query: 3   NKGTEL-EYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSN 61
           N+  +L E +  S L   I + NNS   ++P    +L     +   NN L+  +P  L N
Sbjct: 141 NQLEKLPELQNSSFL-KIIDVDNNSLK-KLPDLPPSL---EFIAAGNNQLE-ELP-ELQN 193

Query: 62  LTAIESMDLSSNMLSGNIPQQLSELTSLEFFDVSDNLLTGP 102
           L  + ++   +N L   +P     L S+      +N+L   
Sbjct: 194 LPFLTAIYADNNSLK-KLPDLPLSLESI---VAGNNILEEL 230

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 50.8 bits (122), Expect = 8e-08
 Identities = 22/105 (20%), Positives = 39/105 (37%), Gaps = 21/105 (20%)

Query: 11  EKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPL------------- 57
           E   +L  +++ S NS   E+P    +LK L   + +   L    PL             
Sbjct: 88  ELPPHL-ESLVASCNSLT-ELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEK 145

Query: 58  --SLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEFFDVSDNLLT 100
              L N + ++ +D+ +N L   +P     L  +      +N L 
Sbjct: 146 LPELQNSSFLKIIDVDNNSLK-KLPDLPPSLEFI---AAGNNQLE 186

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 50.0 bits (120), Expect = 1e-07
 Identities = 25/91 (27%), Positives = 45/91 (49%), Gaps = 11/91 (12%)

Query: 11  EKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDL 70
           +   +L  +I+  NN    E    + NL  L  +   NN L+  +P    +L   E++++
Sbjct: 212 DLPLSL-ESIVAGNNIL--EELPELQNLPFLTTIYADNNLLK-TLPDLPPSL---EALNV 264

Query: 71  SSNMLSGNIPQQLSELTSLEFFDVSDNLLTG 101
             N L+ ++P+    LT L   DVS+N+ +G
Sbjct: 265 RDNYLT-DLPELPQSLTFL---DVSENIFSG 291

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 50.0 bits (120), Expect = 1e-07
 Identities = 19/101 (18%), Positives = 35/101 (34%), Gaps = 19/101 (18%)

Query: 13  LSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTA-------- 64
            + L   +  S+N  + E+P    N+K       + +  +   P                
Sbjct: 10  NTFLQEPLRHSSN--LTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRD 67

Query: 65  -----IESMDLSSNMLSGNIPQQLSELTSLEFFDVSDNLLT 100
                   ++L++  LS ++P+    L SL     S N LT
Sbjct: 68  CLDRQAHELELNNLGLS-SLPELPPHLESL---VASCNSLT 104

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 47.7 bits (114), Expect = 7e-07
 Identities = 26/99 (26%), Positives = 37/99 (37%), Gaps = 14/99 (14%)

Query: 2   SNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSN 61
            N  + L  E   NL   +  S+N    EI +       L  L++SNN L   +P     
Sbjct: 286 ENIFSGLS-ELPPNL-YYLNASSN----EIRSLCDLPPSLEELNVSNNKLI-ELPALPPR 338

Query: 62  LTAIESMDLSSNMLSGNIPQQLSELTSLEFFDVSDNLLT 100
           L  +     S N L+  +P+    L  L    V  N L 
Sbjct: 339 LERL---IASFNHLA-EVPELPQNLKQL---HVEYNPLR 370

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 47.7 bits (114), Expect = 9e-07
 Identities = 24/115 (20%), Positives = 39/115 (33%), Gaps = 27/115 (23%)

Query: 2   SNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSN 61
           SN+   L  +   +L   + +SNN  + E+P     L+    L  S N+L   +P    N
Sbjct: 306 SNEIRSLC-DLPPSL-EELNVSNNKLI-ELPALPPRLE---RLIASFNHLA-EVPELPQN 358

Query: 62  LTAIESMDLSSNMLSGNIPQQLSELT----------------SLEFFDVSDNLLT 100
           L     + +  N L    P     +                 +L+   V  N L 
Sbjct: 359 LK---QLHVEYNPLR-EFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLR 409

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 46.5 bits (111), Expect = 2e-06
 Identities = 11/71 (15%), Positives = 23/71 (32%), Gaps = 1/71 (1%)

Query: 31  IPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLE 90
           I     +   L+     ++NL   +P+   N+ +      + +    N P    E   + 
Sbjct: 3   INPRNVSNTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMA 61

Query: 91  FFDVSDNLLTG 101
              + D L   
Sbjct: 62  VSRLRDCLDRQ 72

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 46.1 bits (110), Expect = 3e-06
 Identities = 20/90 (22%), Positives = 37/90 (41%), Gaps = 13/90 (14%)

Query: 11  EKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDL 70
           +   +L  A+ + +N    ++P    +   L  LD+S N     +     NL     ++ 
Sbjct: 254 DLPPSL-EALNVRDNYLT-DLPELPQS---LTFLDVSENIFS-GLSELPPNLY---YLNA 304

Query: 71  SSNMLSGNIPQQLSELTSLEFFDVSDNLLT 100
           SSN +  ++      L  L   +VS+N L 
Sbjct: 305 SSNEIR-SLCDLPPSLEEL---NVSNNKLI 330

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 45.4 bits (108), Expect = 5e-06
 Identities = 18/108 (16%), Positives = 33/108 (30%), Gaps = 26/108 (24%)

Query: 13  LSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLT--------- 63
              L   +I S N    E+P    NLK    L +  N L+   P    ++          
Sbjct: 336 PPRL-ERLIASFNHLA-EVPELPQNLK---QLHVEYNPLR-EFPDIPESVEDLRMNSHLA 389

Query: 64  -------AIESMDLSSNMLSGNIPQQLSELTSLEFFDVSDNLLTGPIP 104
                   ++ + + +N L    P     +  L    ++   +  P  
Sbjct: 390 EVPELPQNLKQLHVETNPLR-EFPDIPESVEDL---RMNSERVVDPYE 433

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 38.8 bits (91), Expect = 7e-04
 Identities = 18/99 (18%), Positives = 31/99 (31%), Gaps = 11/99 (11%)

Query: 2   SNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSN 61
            N   E       ++     L  NS + E+P    NLK    L +  N L+   P    +
Sbjct: 366 YNPLREFPDI-PESVED---LRMNSHLAEVPELPQNLK---QLHVETNPLR-EFPDIPES 417

Query: 62  LTAIESMDLSSNMLSGNIPQQLSELTSLEFFDVSDNLLT 100
           +   E + ++S  +             LE      +   
Sbjct: 418 V---EDLRMNSERVVDPYEFAHETTDKLEDDVFEHHHHH 453

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 54.4 bits (131), Expect = 4e-09
 Identities = 25/115 (21%), Positives = 47/115 (40%), Gaps = 8/115 (6%)

Query: 13  LSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSS 72
           L NL   + L   +   ++P  +  L GL  L++S N+     P S   L++++ + + +
Sbjct: 195 LFNL-KYLNLGMCNIK-DMPN-LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMN 251

Query: 73  NMLSGNIPQQLSELTSLEFFDVSDNLLTGPIPRGKQFDTFGKS---SFDGNPGLC 124
           + +S         L SL   +++ N L+  +P    F             NP  C
Sbjct: 252 SQVSLIERNAFDGLASLVELNLAHNNLSS-LPHD-LFTPLRYLVELHLHHNPWNC 304

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 51.3 bits (123), Expect = 5e-08
 Identities = 16/91 (17%), Positives = 38/91 (41%), Gaps = 2/91 (2%)

Query: 11  EKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDL 70
           + + +    + L  N+       +  +L  L  L L  N+++     + + L ++ +++L
Sbjct: 71  QGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLEL 130

Query: 71  SSNMLSGNIPQQ-LSELTSLEFFDVSDNLLT 100
             N L+  IP      L+ L    + +N + 
Sbjct: 131 FDNWLT-VIPSGAFEYLSKLRELWLRNNPIE 160

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 47.4 bits (113), Expect = 1e-06
 Identities = 23/113 (20%), Positives = 47/113 (41%), Gaps = 12/113 (10%)

Query: 11  EKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDL 70
            ++ +L+   +            +   L  L+ L+L   N++  +P +L+ L  +E +++
Sbjct: 168 NRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMP-NLTPLVGLEELEM 225

Query: 71  SSNMLSGNIPQQLSELTSLEFFDVSDNLLTGPIPRGKQFDTFGKSSFDGNPGL 123
           S N      P     L+SL+   V ++ ++  I R          +FDG   L
Sbjct: 226 SGNHFPEIRPGSFHGLSSLKKLWVMNSQVSL-IERN---------AFDGLASL 268

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 54.1 bits (130), Expect = 4e-09
 Identities = 21/103 (20%), Positives = 33/103 (32%), Gaps = 10/103 (9%)

Query: 8   LEYEKLSNLITAIILSNNSFVGEIPTSIANLKG--LRNLDLSNNNLQGRIP----LSLSN 61
           L    L  L     L N    G  P  +    G  L  L+L N +   R      L    
Sbjct: 92  LGISGLQELT----LENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWL 147

Query: 62  LTAIESMDLSSNMLSGNIPQQLSELTSLEFFDVSDNLLTGPIP 104
              ++ + ++         +Q+    +L   D+SDN   G   
Sbjct: 148 KPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERG 190

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 51.1 bits (122), Expect = 5e-08
 Identities = 19/87 (21%), Positives = 31/87 (35%), Gaps = 8/87 (9%)

Query: 22  LSNNSFVGEIPTSIA----NLKGLRNLDLSNNNLQ---GRIPLSLSNLTAIESMDLSSNM 74
           LS+N  +GE     A        L+ L L N  ++   G      +    ++ +DLS N 
Sbjct: 180 LSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNS 239

Query: 75  LSGNIPQQL-SELTSLEFFDVSDNLLT 100
           L            + L   ++S   L 
Sbjct: 240 LRDAAGAPSCDWPSQLNSLNLSFTGLK 266

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 49.1 bits (117), Expect = 2e-07
 Identities = 19/82 (23%), Positives = 27/82 (32%), Gaps = 6/82 (7%)

Query: 22  LSNNSFVGEIPTSI-ANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIP 80
           LS+NS               L +L+LS   L+       + L     +DLS N L    P
Sbjct: 235 LSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPAKL---SVLDLSYNRLDR-NP 290

Query: 81  QQLSELTSLEFFDVSDNLLTGP 102
               EL  +    +  N     
Sbjct: 291 -SPDELPQVGNLSLKGNPFLDS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 47.2 bits (112), Expect = 9e-07
 Identities = 15/103 (14%), Positives = 38/103 (36%), Gaps = 9/103 (8%)

Query: 2   SNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSN 61
              G +L    L N+      + ++++ E+   +    GL+ L ++  +        +  
Sbjct: 117 EATGPDLNILNLRNVS---WATRDAWLAELQQWL--KPGLKVLSIAQAHSLNFSCEQVRV 171

Query: 62  LTAIESMDLSSNMLSGNIP----QQLSELTSLEFFDVSDNLLT 100
             A+ ++DLS N   G           +  +L+   + +  + 
Sbjct: 172 FPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGME 214

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 40.7 bits (95), Expect = 1e-04
 Identities = 15/95 (15%), Positives = 33/95 (34%), Gaps = 5/95 (5%)

Query: 13  LSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIP---LSLSNLTAIESMD 69
             +L   +   +        T I     L+ L +    +  RI    L +  ++ ++ + 
Sbjct: 42  GRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELT 101

Query: 70  LSSNMLSGNIPQQLSELT--SLEFFDVSDNLLTGP 102
           L +  ++G  P  L E T   L   ++ +      
Sbjct: 102 LENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR 136

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 54.0 bits (129), Expect = 5e-09
 Identities = 17/102 (16%), Positives = 31/102 (30%), Gaps = 13/102 (12%)

Query: 30  EIPTSIANLKGLRNLDLSNNNLQGRIPL-SLSNLTAIESMDLSSNMLSGNIPQQ-LSELT 87
           +    +   + L  L + N      + L  L  L  + ++ +  + L   +         
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAFHFTP 80

Query: 88  SLEFFDVSDNLLTGPIPRGKQFDTFGKSS-----FDGNPGLC 124
            L   ++S N L   +       T    S       GNP  C
Sbjct: 81  RLSRLNLSFNALES-LSW----KTVQGLSLQELVLSGNPLHC 117

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 52.8 bits (126), Expect = 1e-08
 Identities = 20/89 (22%), Positives = 38/89 (42%), Gaps = 3/89 (3%)

Query: 13  LSNLITAIILSNNSFVGEIPT-SIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLS 71
             NL T + + N   +  +    +  L  LRNL +  + L+   P +      +  ++LS
Sbjct: 30  AENL-TELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88

Query: 72  SNMLSGNIPQQLSELTSLEFFDVSDNLLT 100
            N L  ++  +  +  SL+   +S N L 
Sbjct: 89  FNALE-SLSWKTVQGLSLQELVLSGNPLH 116

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 54.0 bits (130), Expect = 5e-09
 Identities = 31/117 (26%), Positives = 46/117 (39%), Gaps = 8/117 (6%)

Query: 11  EKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDL 70
           E LSNL   + L+  +   EIP  +  L  L  LDLS N+L    P S   L  ++ + +
Sbjct: 182 EGLSNL-RYLNLAMCNLR-EIPN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWM 238

Query: 71  SSNMLSGNIPQQLSELTSLEFFDVSDNLLTGPIPRGKQFDTFGKS---SFDGNPGLC 124
             + +          L SL   +++ N LT  +P    F             NP  C
Sbjct: 239 IQSQIQVIERNAFDNLQSLVEINLAHNNLTL-LPHD-LFTPLHHLERIHLHHNPWNC 293

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 53.2 bits (128), Expect = 1e-08
 Identities = 19/91 (20%), Positives = 39/91 (42%), Gaps = 2/91 (2%)

Query: 11  EKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDL 70
           + +S     + L  N        S  +L+ L  L LS N+++     + + L  + +++L
Sbjct: 60  DGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLEL 119

Query: 71  SSNMLSGNIPQQ-LSELTSLEFFDVSDNLLT 100
             N L+  IP      L+ L+   + +N + 
Sbjct: 120 FDNRLT-TIPNGAFVYLSKLKELWLRNNPIE 149

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 52.1 bits (125), Expect = 2e-08
 Identities = 22/98 (22%), Positives = 38/98 (38%), Gaps = 4/98 (4%)

Query: 2   SNKGTELEY-EKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLS 60
                E+     L  L   + LS N      P S   L  L+ L +  + +Q     +  
Sbjct: 194 MCNLREIPNLTPLIKL-DELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFD 252

Query: 61  NLTAIESMDLSSNMLSGNIPQQ-LSELTSLEFFDVSDN 97
           NL ++  ++L+ N L+  +P    + L  LE   +  N
Sbjct: 253 NLQSLVEINLAHNNLT-LLPHDLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 51.7 bits (124), Expect = 3e-08
 Identities = 28/96 (29%), Positives = 41/96 (42%), Gaps = 7/96 (7%)

Query: 13  LSNLITAIILSNNSFVGEIPTSI-ANLKGLRNLDLSNNNLQGRIPL-SLSNLTAIESMDL 70
           LS L   + L NN     IP+     +  LR LDL        I   +   L+ +  ++L
Sbjct: 135 LSKL-KELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNL 192

Query: 71  SSNMLSGNIPQQLSELTSLEFFDVSDNLLTGPIPRG 106
           +   L   IP  L+ L  L+  D+S N L+  I  G
Sbjct: 193 AMCNLR-EIP-NLTPLIKLDELDLSGNHLSA-IRPG 225

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 47.1 bits (112), Expect = 1e-06
 Identities = 27/115 (23%), Positives = 44/115 (38%), Gaps = 16/115 (13%)

Query: 11  EKLSNLITAIILSNNSFVGEIPTSI-ANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMD 69
            ++ +L    +         I       L  LR L+L+  NL+  IP +L+ L  ++ +D
Sbjct: 157 NRIPSLRRLDLGELKRLS-YISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELD 213

Query: 70  LSSNMLSGNIPQQ-LSELTSLEFFDVSDNLLTGPIPRGKQFDTFGKSSFDGNPGL 123
           LS N LS  I       L  L+   +  + +   I R          +FD    L
Sbjct: 214 LSGNHLS-AIRPGSFQGLMHLQKLWMIQSQIQV-IERN---------AFDNLQSL 257

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 47.1 bits (112), Expect = 1e-06
 Identities = 26/93 (27%), Positives = 40/93 (43%), Gaps = 4/93 (4%)

Query: 14  SNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSN 73
           SN  + +I    +   E+P  I      R L+L  N +Q     S  +L  +E + LS N
Sbjct: 42  SNQFSKVICVRKNLR-EVPDGI--STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRN 98

Query: 74  MLSGNIPQQLSELTSLEFFDVSDNLLTGPIPRG 106
            +        + L +L   ++ DN LT  IP G
Sbjct: 99  HIRTIEIGAFNGLANLNTLELFDNRLTT-IPNG 130

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 53.6 bits (129), Expect = 8e-09
 Identities = 21/95 (22%), Positives = 39/95 (41%), Gaps = 3/95 (3%)

Query: 13  LSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSS 72
           +      + L  N          A+   L  L+L+ N +    P + +NL  + ++ L S
Sbjct: 30  IPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRS 89

Query: 73  NMLSGNIPQQ-LSELTSLEFFDVSDNLLTGPIPRG 106
           N L   IP    + L++L   D+S+N +   +   
Sbjct: 90  NRLK-LIPLGVFTGLSNLTKLDISENKIVI-LLDY 122

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 52.4 bits (126), Expect = 2e-08
 Identities = 28/109 (25%), Positives = 46/109 (42%), Gaps = 7/109 (6%)

Query: 2   SNKGTELEYEKLSNL--ITAIILSNNSFVGEIPTSI-ANLKGLRNLDLSNNNLQGRIPLS 58
            N  + +E    +NL  +  + L +N     IP  +   L  L  LD+S N +   +   
Sbjct: 65  ENIVSAVEPGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKLDISENKIVILLDYM 123

Query: 59  LSNLTAIESMDLSSNMLSGNIPQQ-LSELTSLEFFDVSDNLLTGPIPRG 106
             +L  ++S+++  N L   I  +  S L SLE   +    LT  IP  
Sbjct: 124 FQDLYNLKSLEVGDNDLV-YISHRAFSGLNSLEQLTLEKCNLTS-IPTE 170

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 50.5 bits (121), Expect = 9e-08
 Identities = 23/107 (21%), Positives = 40/107 (37%), Gaps = 7/107 (6%)

Query: 22  LSNNSFVGEIPT-SIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIP 80
           +++ +    +P  ++ +L  LR L+LS N +       L  L  ++ + L    L+  + 
Sbjct: 231 ITHCNLT-AVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLA-VVE 288

Query: 81  QQ-LSELTSLEFFDVSDNLLTGPIPRG--KQFDTFGKSSFDGNPGLC 124
                 L  L   +VS N LT  +                D NP  C
Sbjct: 289 PYAFRGLNYLRVLNVSGNQLTT-LEESVFHSVGNLETLILDSNPLAC 334

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 50.5 bits (121), Expect = 9e-08
 Identities = 19/97 (19%), Positives = 35/97 (36%), Gaps = 3/97 (3%)

Query: 11  EKLSNLITAIILSNNSFVGEIPTSI-ANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMD 69
           + L NL + + + +N  V  I     + L  L  L L   NL      +LS+L  +  + 
Sbjct: 125 QDLYNLKS-LEVGDNDLV-YISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLR 182

Query: 70  LSSNMLSGNIPQQLSELTSLEFFDVSDNLLTGPIPRG 106
           L    ++         L  L+  ++S       +   
Sbjct: 183 LRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPN 219

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 49.7 bits (119), Expect = 1e-07
 Identities = 20/91 (21%), Positives = 36/91 (39%), Gaps = 5/91 (5%)

Query: 11  EKLSNLITAIILSNNSFVGEIPTSI-ANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMD 69
             L  L   + LS N     I  S+   L  L+ + L    L    P +   L  +  ++
Sbjct: 245 RHLVYLRF-LNLSYNPIS-TIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLN 302

Query: 70  LSSNMLSGNIPQQL-SELTSLEFFDVSDNLL 99
           +S N L+  + + +   + +LE   +  N L
Sbjct: 303 VSGNQLT-TLEESVFHSVGNLETLILDSNPL 332

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 49.3 bits (118), Expect = 2e-07
 Identities = 19/95 (20%), Positives = 39/95 (41%), Gaps = 4/95 (4%)

Query: 13  LSNLITAIILSNNSFVGEIPT-SIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLS 71
           L++L   + L   +    IPT ++++L GL  L L + N+      S   L  ++ +++S
Sbjct: 151 LNSL-EQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEIS 208

Query: 72  SNMLSGNIPQQLSELTSLEFFDVSDNLLTGPIPRG 106
                  +        +L    ++   LT  +P  
Sbjct: 209 HWPYLDTMTPNCLYGLNLTSLSITHCNLTA-VPYL 242

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 45.5 bits (108), Expect = 4e-06
 Identities = 18/84 (21%), Positives = 35/84 (41%), Gaps = 5/84 (5%)

Query: 18  TAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSG 77
            A++     FV  +P  I      R LDL  N ++       ++   +E ++L+ N++S 
Sbjct: 14  RAVLCHRKRFV-AVPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVS- 69

Query: 78  NIPQQ-LSELTSLEFFDVSDNLLT 100
            +     + L +L    +  N L 
Sbjct: 70  AVEPGAFNNLFNLRTLGLRSNRLK 93

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 52.7 bits (127), Expect = 1e-08
 Identities = 22/110 (20%), Positives = 43/110 (39%), Gaps = 8/110 (7%)

Query: 2   SNKGTELEYEKLSNL--ITAIILSNNSFVGEIPTSI-ANLKGLRNLDLSNNNLQGRIPL- 57
           SN    ++    + L  +  + LS+N+ +  +  +    L  L  L L    LQ  +   
Sbjct: 65  SNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPG 123

Query: 58  SLSNLTAIESMDLSSNMLSGNIPQQ-LSELTSLEFFDVSDNLLTGPIPRG 106
               L A++ + L  N L   +P     +L +L    +  N ++  +P  
Sbjct: 124 LFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISS-VPER 171

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 51.9 bits (125), Expect = 2e-08
 Identities = 23/87 (26%), Positives = 40/87 (45%), Gaps = 3/87 (3%)

Query: 12  KLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLS 71
            L NL T + L  N        +   L  L  L L  N +    P +  +L  + ++ L 
Sbjct: 151 DLGNL-THLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLF 209

Query: 72  SNMLSGNIPQQ-LSELTSLEFFDVSDN 97
           +N LS  +P + L+ L +L++  ++DN
Sbjct: 210 ANNLS-ALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 49.6 bits (119), Expect = 1e-07
 Identities = 22/118 (18%), Positives = 44/118 (37%), Gaps = 8/118 (6%)

Query: 11  EKLSNLITAIILSNNSFVGEIPTSI-ANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMD 69
             L+ L   + L +N+    +P     +L  L +L L  N +      +   L +++ + 
Sbjct: 126 RGLAAL-QYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLL 183

Query: 70  LSSNMLSGNIPQQLSELTSLEFFDVSDNLLTGPIPRGKQFDTFGKSSF---DGNPGLC 124
           L  N ++   P    +L  L    +  N L+  +P            +   + NP +C
Sbjct: 184 LHQNRVAHVHPHAFRDLGRLMTLYLFANNLSA-LPTE-ALAPLRALQYLRLNDNPWVC 239

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 48.5 bits (116), Expect = 4e-07
 Identities = 19/95 (20%), Positives = 30/95 (31%), Gaps = 2/95 (2%)

Query: 13  LSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSS 72
           +      I L  N        S    + L  L L +N L      + + L  +E +DLS 
Sbjct: 30  IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD 89

Query: 73  NMLSGNIPQQ-LSELTSLEFFDVSDNLLTGPIPRG 106
           N    ++       L  L    +    L   +  G
Sbjct: 90  NAQLRSVDPATFHGLGRLHTLHLDRCGLQE-LGPG 123

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 52.7 bits (127), Expect = 1e-08
 Identities = 21/100 (21%), Positives = 43/100 (43%), Gaps = 4/100 (4%)

Query: 2   SNKGTELEYEKLSNLITAIILSNNSFVGEIPT-SIANLKGLRNLDLSNNNLQGRIPLSLS 60
               T +      +L T + L  N    ++   S+  L  L  L LS N++      SL+
Sbjct: 180 DTNITTIPQGLPPSL-TELHLDGNKI-TKVDAASLKGLNNLAKLGLSFNSISAVDNGSLA 237

Query: 61  NLTAIESMDLSSNMLSGNIPQQLSELTSLEFFDVSDNLLT 100
           N   +  + L++N L   +P  L++   ++   + +N ++
Sbjct: 238 NTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS 276

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 48.5 bits (116), Expect = 3e-07
 Identities = 23/98 (23%), Positives = 40/98 (40%), Gaps = 7/98 (7%)

Query: 11  EKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDL 70
             L  L   + LS N    E+P  +   K L+ L +  N +        + L  +  ++L
Sbjct: 97  APLVKLER-LYLSKNQLK-ELPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVEL 152

Query: 71  SSNML-SGNIPQQ-LSELTSLEFFDVSDNLLTGPIPRG 106
            +N L S  I       +  L +  ++D  +T  IP+G
Sbjct: 153 GTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQG 189

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 48.5 bits (116), Expect = 4e-07
 Identities = 20/89 (22%), Positives = 34/89 (38%), Gaps = 4/89 (4%)

Query: 18  TAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSG 77
             +  S+     ++P  +        LDL NN +         NL  + ++ L +N +S 
Sbjct: 34  RVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISK 90

Query: 78  NIPQQLSELTSLEFFDVSDNLLTGPIPRG 106
             P   + L  LE   +S N L   +P  
Sbjct: 91  ISPGAFAPLVKLERLYLSKNQLKE-LPEK 118

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 45.4 bits (108), Expect = 4e-06
 Identities = 17/94 (18%), Positives = 39/94 (41%), Gaps = 14/94 (14%)

Query: 14  SNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSN 73
           +N + +  + N +F          +K L  + +++ N+   IP  L    ++  + L  N
Sbjct: 154 TNPLKSSGIENGAF--------QGMKKLSYIRIADTNIT-TIPQGL--PPSLTELHLDGN 202

Query: 74  MLSGNIPQQ-LSELTSLEFFDVSDNLLTGPIPRG 106
            ++  +    L  L +L    +S N ++  +  G
Sbjct: 203 KIT-KVDAASLKGLNNLAKLGLSFNSISA-VDNG 234

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 44.6 bits (106), Expect = 7e-06
 Identities = 17/93 (18%), Positives = 35/93 (37%), Gaps = 10/93 (10%)

Query: 13  LSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQG------RIPLSLSNLTAIE 66
             +L   + L+NN  V ++P  +A+ K ++ + L NNN+          P   +   +  
Sbjct: 239 TPHL-RELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYS 296

Query: 67  SMDLSSNMLS-GNIPQQL-SELTSLEFFDVSDN 97
            + L SN +    I       +       + + 
Sbjct: 297 GVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 53.1 bits (127), Expect = 1e-08
 Identities = 18/103 (17%), Positives = 34/103 (33%), Gaps = 7/103 (6%)

Query: 11  EKLSNLITAIILSNNSFVGEIPTSIANLKGLRN----LDLSNNNLQGRIPLSLSNLTAIE 66
           E   +L  A+ +S N     +P                    N +   IP ++ +L    
Sbjct: 177 ELPESL-EALDVSTNLLE-SLPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTC 233

Query: 67  SMDLSSNMLSGNIPQQLSELTSLEFFDVSDNLLTGPIPRGKQF 109
           ++ L  N LS  I + LS+ T+   +       +    +    
Sbjct: 234 TIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTL 276

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 50.7 bits (121), Expect = 8e-08
 Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 13/90 (14%)

Query: 11  EKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDL 70
           E  ++L   +   +N     +P   A+LK   +LD+ NN L   +P   + L   E ++ 
Sbjct: 97  ELPASL-EYLDACDNRLS-TLPELPASLK---HLDVDNNQLT-MLPELPALL---EYINA 147

Query: 71  SSNMLSGNIPQQLSELTSLEFFDVSDNLLT 100
            +N L+  +P+  + L  L    V +N LT
Sbjct: 148 DNNQLT-MLPELPTSLEVL---SVRNNQLT 173

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 49.2 bits (117), Expect = 3e-07
 Identities = 18/93 (19%), Positives = 34/93 (36%), Gaps = 11/93 (11%)

Query: 10  YEKLSNLITAIILSN--NSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIES 67
           +          +     N  V  +      +     L L+  NL   +P +L     I  
Sbjct: 30  FSAWDKWEKQALPGENRNEAVSLLK--ECLINQFSELQLNRLNLS-SLPDNL--PPQITV 84

Query: 68  MDLSSNMLSGNIPQQLSELTSLEFFDVSDNLLT 100
           ++++ N L  ++P+  + L  L   D  DN L+
Sbjct: 85  LEITQNALI-SLPELPASLEYL---DACDNRLS 113

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 43.4 bits (102), Expect = 3e-05
 Identities = 17/97 (17%), Positives = 24/97 (24%), Gaps = 3/97 (3%)

Query: 12  KLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLS 71
                        N     IP +I +L     + L +N L  RI  SLS  TA    D  
Sbjct: 204 HSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQP--DYH 260

Query: 72  SNMLSGNIPQQLSELTSLEFFDVSDNLLTGPIPRGKQ 108
              +  ++             D               
Sbjct: 261 GPRIYFSMSDGQQNTLHRPLADAVTAWFPENKQSDVS 297

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 53.2 bits (128), Expect = 1e-08
 Identities = 19/99 (19%), Positives = 38/99 (38%), Gaps = 9/99 (9%)

Query: 2   SNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSN 61
            N  TEL+   LS L T +       + EI   + +   L               L +++
Sbjct: 242 VNPLTELDVSTLSKL-TTLHCIQTDLL-EID--LTHNTQLIYFQAEGCRKI--KELDVTH 295

Query: 62  LTAIESMDLSSNMLSGNIPQQLSELTSLEFFDVSDNLLT 100
            T +  +D  +  ++  +   LS+   L +  +++  LT
Sbjct: 296 NTQLYLLDCQAAGIT-ELD--LSQNPKLVYLYLNNTELT 331

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 52.8 bits (127), Expect = 2e-08
 Identities = 23/99 (23%), Positives = 39/99 (39%), Gaps = 10/99 (10%)

Query: 2   SNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSN 61
            NK TEL+  +   L   +    N+   ++   +     L  LD S+N L     + ++ 
Sbjct: 179 FNKITELDVSQNKLL-NRLNCDTNNIT-KLD--LNQNIQLTFLDCSSNKLTE---IDVTP 231

Query: 62  LTAIESMDLSSNMLSGNIPQQLSELTSLEFFDVSDNLLT 100
           LT +   D S N L+  +   +S L+ L         L 
Sbjct: 232 LTQLTYFDCSVNPLT-ELD--VSTLSKLTTLHCIQTDLL 267

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 51.2 bits (123), Expect = 5e-08
 Identities = 22/99 (22%), Positives = 44/99 (44%), Gaps = 9/99 (9%)

Query: 2   SNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSN 61
           +NK T+L+  +   L T +  + N+   EI   +++   L  LD   N       L ++ 
Sbjct: 115 TNKLTKLDVSQNPLL-TYLNCARNTLT-EID--VSHNTQLTELDCHLNKKIT--KLDVTP 168

Query: 62  LTAIESMDLSSNMLSGNIPQQLSELTSLEFFDVSDNLLT 100
            T + ++D S N ++  +   +S+   L   +   N +T
Sbjct: 169 QTQLTTLDCSFNKIT-ELD--VSQNKLLNRLNCDTNNIT 204

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 50.8 bits (122), Expect = 6e-08
 Identities = 21/99 (21%), Positives = 34/99 (34%), Gaps = 9/99 (9%)

Query: 2   SNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSN 61
           SNK TE++   L+ L      S N    E+  S   L  L  L     +L     + L++
Sbjct: 221 SNKLTEIDVTPLTQLTY-FDCSVNPL-TELDVS--TLSKLTTLHCIQTDLLE---IDLTH 273

Query: 62  LTAIESMDLSSNMLSGNIPQQLSELTSLEFFDVSDNLLT 100
            T +             +   ++  T L   D     +T
Sbjct: 274 NTQLIYFQAEGCRKIKELD--VTHNTQLYLLDCQAAGIT 310

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 49.3 bits (118), Expect = 2e-07
 Identities = 17/81 (20%), Positives = 34/81 (41%), Gaps = 5/81 (6%)

Query: 20  IILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNI 79
            + +          S   L  L +LD  N+++   +   +  LT +  +  +SN ++  +
Sbjct: 23  EVAAAFEMQATDTISEEQLATLTSLDCHNSSITD-MT-GIEKLTGLTKLICTSNNIT-TL 79

Query: 80  PQQLSELTSLEFFDVSDNLLT 100
              LS+ T+L +     N LT
Sbjct: 80  D--LSQNTNLTYLACDSNKLT 98

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 48.9 bits (117), Expect = 3e-07
 Identities = 23/103 (22%), Positives = 39/103 (37%), Gaps = 10/103 (9%)

Query: 2   SNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSN 61
           SN  T L+  + +NL T +   +N     +   +  L  L  L+   N L     L +S 
Sbjct: 73  SNNITTLDLSQNTNL-TYLACDSNKLT-NLD--VTPLTKLTYLNCDTNKLT---KLDVSQ 125

Query: 62  LTAIESMDLSSNMLSGNIPQQLSELTSLEFFDVSDNLLTGPIP 104
              +  ++ + N L+  I   +S  T L   D   N     + 
Sbjct: 126 NPLLTYLNCARNTLT-EID--VSHNTQLTELDCHLNKKITKLD 165

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 43.5 bits (103), Expect = 2e-05
 Identities = 10/60 (16%), Positives = 26/60 (43%), Gaps = 2/60 (3%)

Query: 41  LRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEFFDVSDNLLT 100
             +   +   +Q    +S   L  + S+D  ++ ++ ++   + +LT L     + N +T
Sbjct: 20  FASEVAAAFEMQATDTISEEQLATLTSLDCHNSSIT-DMT-GIEKLTGLTKLICTSNNIT 77

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 52.5 bits (126), Expect = 2e-08
 Identities = 28/111 (25%), Positives = 53/111 (47%), Gaps = 10/111 (9%)

Query: 2   SNKGTELEYE----KLSNLITAIILSNNSFVGEIPTSI-ANLKGLRNLDLSNNNLQGRIP 56
            N  + L  E    +L+NL  +++LS+N  +  I +     +  LR LDLS+N+L     
Sbjct: 48  HNNLSRLRAEWTPTRLTNL-HSLLLSHNH-LNFISSEAFVPVPNLRYLDLSSNHLHTLDE 105

Query: 57  LSLSNLTAIESMDLSSNMLSGNIPQ-QLSELTSLEFFDVSDNLLTGPIPRG 106
              S+L A+E + L +N +   + +    ++  L+   +S N ++   P  
Sbjct: 106 FLFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQISR-FPVE 154

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 50.6 bits (121), Expect = 7e-08
 Identities = 26/125 (20%), Positives = 50/125 (40%), Gaps = 17/125 (13%)

Query: 11  EKLSNLITAIILSNNSFVGEIPTSI-ANLKGLRNLDLSNNNLQGRIPL-SLSNLTAIESM 68
             + NL   + LS+N  +  +   + ++L+ L  L L NN++   +   +  ++  ++ +
Sbjct: 85  VPVPNLRY-LDLSSNH-LHTLDEFLFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQKL 141

Query: 69  DLSSNMLSGNIP----QQLSELTSLEFFDVSDNLLTGPIPRGKQFDTFGKS-----SFDG 119
            LS N +S   P    +  ++L  L   D+S N L   +P                    
Sbjct: 142 YLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLKK-LPLT-DLQKLPAWVKNGLYLHN 198

Query: 120 NPGLC 124
           NP  C
Sbjct: 199 NPLEC 203

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 42.5 bits (100), Expect = 4e-05
 Identities = 25/97 (25%), Positives = 41/97 (42%), Gaps = 17/97 (17%)

Query: 30  EIPTSIANLKGLRNLDLSNNNLQGRIP--LSLSNLTAIESMDLSSNMLSGNIPQQ-LSEL 86
            +P S+ +      LDLS+NNL  R+    + + LT + S+ LS N L+  I  +    +
Sbjct: 32  NVPQSLPS--YTALLDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPV 87

Query: 87  TSLEFFDVSDNLLTGPIPRGKQFDTFGKSSFDGNPGL 123
            +L + D+S N L   +             F     L
Sbjct: 88  PNLRYLDLSSNHLHT-LDEF---------LFSDLQAL 114

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 51.2 bits (123), Expect = 4e-08
 Identities = 25/100 (25%), Positives = 47/100 (47%), Gaps = 8/100 (8%)

Query: 2   SNKGTELEY-EKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLS 60
           S + T++     LSNL   + L  N  +  I   +A L  L+ L + N  +    P  L+
Sbjct: 116 STQITDVTPLAGLSNL-QVLYLDLNQ-ITNIS-PLAGLTNLQYLSIGNAQVSDLTP--LA 170

Query: 61  NLTAIESMDLSSNMLSGNIPQQLSELTSLEFFDVSDNLLT 100
           NL+ + ++    N +S +I   L+ L +L    + +N ++
Sbjct: 171 NLSKLTTLKADDNKIS-DIS-PLASLPNLIEVHLKNNQIS 208

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 47.8 bits (114), Expect = 6e-07
 Identities = 25/100 (25%), Positives = 55/100 (55%), Gaps = 8/100 (8%)

Query: 2   SNKGTELE-YEKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLS 60
            N+ T+L   + L+ + T + LS N    +  ++IA L+ ++ LDL++  +    P  L+
Sbjct: 72  DNQITDLAPLKNLTKI-TELELSGNPL--KNVSAIAGLQSIKTLDLTSTQITDVTP--LA 126

Query: 61  NLTAIESMDLSSNMLSGNIPQQLSELTSLEFFDVSDNLLT 100
            L+ ++ + L  N ++ NI   L+ LT+L++  + +  ++
Sbjct: 127 GLSNLQVLYLDLNQIT-NIS-PLAGLTNLQYLSIGNAQVS 164

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 46.2 bits (110), Expect = 2e-06
 Identities = 20/90 (22%), Positives = 38/90 (42%), Gaps = 7/90 (7%)

Query: 11  EKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDL 70
             L+N I  I    ++ V +  T  A+L G+  L      +   I   +  L  +  ++L
Sbjct: 16  PALANAIK-IAAGKSN-VTDTVT-QADLDGITTLSAFGTGVT-TIE-GVQYLNNLIGLEL 70

Query: 71  SSNMLSGNIPQQLSELTSLEFFDVSDNLLT 100
             N ++ ++   L  LT +   ++S N L 
Sbjct: 71  KDNQIT-DLA-PLKNLTKITELELSGNPLK 98

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 42.8 bits (101), Expect = 3e-05
 Identities = 12/82 (14%), Positives = 28/82 (34%), Gaps = 6/82 (7%)

Query: 19  AIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGN 78
             I    +     P     L     +    +N+   +    ++L  I ++      ++  
Sbjct: 1   GSITQPTAINVIFP--DPALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVT-T 55

Query: 79  IPQQLSELTSLEFFDVSDNLLT 100
           I   +  L +L   ++ DN +T
Sbjct: 56  IE-GVQYLNNLIGLELKDNQIT 76

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 41.6 bits (98), Expect = 8e-05
 Identities = 19/103 (18%), Positives = 40/103 (38%), Gaps = 6/103 (5%)

Query: 2   SNKGTELEY-EKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLS 60
           + + ++L     LS L T +   +N  + +I   +A+L  L  + L NN +    PL+  
Sbjct: 160 NAQVSDLTPLANLSKL-TTLKADDNK-ISDIS-PLASLPNLIEVHLKNNQISDVSPLA-- 214

Query: 61  NLTAIESMDLSSNMLSGNIPQQLSELTSLEFFDVSDNLLTGPI 103
           N + +  + L++  ++       + L               P 
Sbjct: 215 NTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSGAPIAPA 257

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 49.7 bits (119), Expect = 4e-08
 Identities = 20/94 (21%), Positives = 41/94 (43%), Gaps = 2/94 (2%)

Query: 7   ELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIE 66
           EL     S++   ++ ++ S  G++       + L  L   N  L   I  +L  L  ++
Sbjct: 10  ELRNRTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SIA-NLPKLNKLK 67

Query: 67  SMDLSSNMLSGNIPQQLSELTSLEFFDVSDNLLT 100
            ++LS N +SG +     +  +L   ++S N + 
Sbjct: 68  KLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIK 101

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 42.4 bits (100), Expect = 2e-05
 Identities = 21/91 (23%), Positives = 40/91 (43%), Gaps = 10/91 (10%)

Query: 11  EKLSNLITAIILSNNSFVGEIPTSIANLKGLRNL---DLSNNNLQGRIPLSLSNLTAIES 67
           ++   L   +   N        TSIANL  L  L   +LS+N + G + +       +  
Sbjct: 39  DEFEEL-EFLSTINVGL-----TSIANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH 92

Query: 68  MDLSSNMLSG-NIPQQLSELTSLEFFDVSDN 97
           ++LS N +   +  + L +L +L+  D+ + 
Sbjct: 93  LNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 51.3 bits (122), Expect = 5e-08
 Identities = 25/90 (27%), Positives = 46/90 (51%), Gaps = 7/90 (7%)

Query: 11  EKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDL 70
           + L  L  ++ L +N  + +I   + +L  L +L L NN +       LS LT ++++ L
Sbjct: 106 KDLKKL-KSLSLEHNG-ISDI-NGLVHLPQLESLYLGNNKITDITV--LSRLTKLDTLSL 160

Query: 71  SSNMLSGNIPQQLSELTSLEFFDVSDNLLT 100
             N +S +I   L+ LT L+   +S N ++
Sbjct: 161 EDNQIS-DIV-PLAGLTKLQNLYLSKNHIS 188

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 46.3 bits (109), Expect = 3e-06
 Identities = 10/84 (11%), Positives = 33/84 (39%), Gaps = 6/84 (7%)

Query: 17  ITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLS 76
           +   I  +   + +I             +L   ++   +    + L +I+ +  +++ + 
Sbjct: 1   MGETITVSTP-IKQI-FPDDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK 56

Query: 77  GNIPQQLSELTSLEFFDVSDNLLT 100
            ++ Q +  L ++    ++ N LT
Sbjct: 57  -SV-QGIQYLPNVTKLFLNGNKLT 78

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 45.5 bits (107), Expect = 4e-06
 Identities = 21/100 (21%), Positives = 43/100 (43%), Gaps = 8/100 (8%)

Query: 2   SNKGTELEY-EKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLS 60
               T+     +L+++   II +N+  +  +   I  L  +  L L+ N L   I   L+
Sbjct: 30  KKSVTDAVTQNELNSI-DQIIANNSD-IKSV-QGIQYLPNVTKLFLNGNKLT-DIK-PLT 84

Query: 61  NLTAIESMDLSSNMLSGNIPQQLSELTSLEFFDVSDNLLT 100
           NL  +  + L  N +  ++   L +L  L+   +  N ++
Sbjct: 85  NLKNLGWLFLDENKIK-DL-SSLKDLKKLKSLSLEHNGIS 122

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 44.7 bits (105), Expect = 7e-06
 Identities = 25/104 (24%), Positives = 46/104 (44%), Gaps = 6/104 (5%)

Query: 2   SNKGTELEY-EKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLS 60
           +NK T++    +L+ L   + L +N  + +I   +A L  L+NL LS N++   +  +L+
Sbjct: 140 NNKITDITVLSRLTKL-DTLSLEDNQ-ISDIV-PLAGLTKLQNLYLSKNHIS-DLR-ALA 194

Query: 61  NLTAIESMDLSSNMLSGNIPQQLSELTSLEFFDVSDNLLTGPIP 104
            L  ++ ++L S           S L        +D  L  P  
Sbjct: 195 GLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEI 238

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 38.9 bits (90), Expect = 6e-04
 Identities = 21/100 (21%), Positives = 43/100 (43%), Gaps = 6/100 (6%)

Query: 2   SNKGTELEY-EKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLS 60
            N+ +++     L+ L   + LS N  + ++  ++A LK L  L+L +     +     S
Sbjct: 162 DNQISDIVPLAGLTKLQN-LYLSKNH-ISDLR-ALAGLKNLDVLELFSQECLNKPINHQS 218

Query: 61  NLTAIESMDLSSNMLSGNIPQQLSELTSLEFFDVSDNLLT 100
           NL    ++  +   L    P+ +S+    E  +V  +L  
Sbjct: 219 NLVVPNTVKNTDGSL--VTPEIISDDGDYEKPNVKWHLPE 256

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 51.0 bits (122), Expect = 6e-08
 Identities = 27/98 (27%), Positives = 41/98 (41%), Gaps = 4/98 (4%)

Query: 13  LSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSS 72
           LS   T + +S N       + I +L  LR L +S+N +Q            +E +DLS 
Sbjct: 19  LSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSH 78

Query: 73  NMLSGNIPQQLSELTSLEFFDVSDNLLTGPIPRGKQFD 110
           N L   I        +L+  D+S N     +P  K+F 
Sbjct: 79  NKLV-KIS--CHPTVNLKHLDLSFNAFDA-LPICKEFG 112

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 44.5 bits (105), Expect = 1e-05
 Identities = 20/110 (18%), Positives = 41/110 (37%), Gaps = 10/110 (9%)

Query: 2   SNKGTELE---YEKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLS 58
            N+   L+   ++    L   + LS+N    +I         L++LDLS N     +P+ 
Sbjct: 54  HNRIQYLDISVFKFNQEL-EYLDLSHNKL-VKIS--CHPTVNLKHLDLSFNAFD-ALPIC 108

Query: 59  --LSNLTAIESMDLSSNMLSGNIPQQLSELTSLEFFDVSDNLLTGPIPRG 106
               N++ ++ + LS+  L  +    ++ L   +   V            
Sbjct: 109 KEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPE 158

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 43.7 bits (103), Expect = 2e-05
 Identities = 29/104 (27%), Positives = 52/104 (50%), Gaps = 7/104 (6%)

Query: 12  KLSNLITAIILSNNSFVGEIPTSI-ANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDL 70
           ++ +L   + +S NS   +      +  K L +L++S+N L   I   L     I+ +DL
Sbjct: 372 QMKSL-QQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL--PPRIKVLDL 428

Query: 71  SSNMLSGNIPQQLSELTSLEFFDVSDNLLTGPIPRGKQFDTFGK 114
            SN +  +IP+Q+ +L +L+  +V+ N L   +P G  FD    
Sbjct: 429 HSNKIK-SIPKQVVKLEALQELNVASNQLKS-VPDG-IFDRLTS 469

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 41.0 bits (96), Expect = 1e-04
 Identities = 13/79 (16%), Positives = 30/79 (37%)

Query: 22  LSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQ 81
           + ++ F             +   + + +  +    L  S ++    +D S+N+L+  + +
Sbjct: 283 VVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFE 342

Query: 82  QLSELTSLEFFDVSDNLLT 100
               LT LE   +  N L 
Sbjct: 343 NCGHLTELETLILQMNQLK 361

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 40.2 bits (94), Expect = 3e-04
 Identities = 19/73 (26%), Positives = 37/73 (50%), Gaps = 3/73 (4%)

Query: 2   SNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPL-SLS 60
           SN  T+  +  L   I  + L +N     IP  +  L+ L+ L++++N L+  +P     
Sbjct: 408 SNILTDTIFRCLPPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFD 465

Query: 61  NLTAIESMDLSSN 73
            LT+++ + L +N
Sbjct: 466 RLTSLQKIWLHTN 478

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 49.4 bits (118), Expect = 7e-08
 Identities = 22/94 (23%), Positives = 40/94 (42%), Gaps = 2/94 (2%)

Query: 7   ELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIE 66
           EL     + +   ++ +  S  G+I    A    L  L L N  L   +  +L  L  ++
Sbjct: 17  ELRNRTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-SVS-NLPKLPKLK 74

Query: 67  SMDLSSNMLSGNIPQQLSELTSLEFFDVSDNLLT 100
            ++LS N + G +     +L +L   ++S N L 
Sbjct: 75  KLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLK 108

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 40.1 bits (94), Expect = 1e-04
 Identities = 22/91 (24%), Positives = 39/91 (42%), Gaps = 10/91 (10%)

Query: 11  EKLSNLITAIILSNNSFVGEIPTSIANLKGLRN---LDLSNNNLQGRIPLSLSNLTAIES 67
            +  NL   + L N         S++NL  L     L+LS N + G + +    L  +  
Sbjct: 46  AEFVNLEF-LSLINVGL-----ISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH 99

Query: 68  MDLSSNMLSG-NIPQQLSELTSLEFFDVSDN 97
           ++LS N L   +  + L +L  L+  D+ + 
Sbjct: 100 LNLSGNKLKDISTLEPLKKLECLKSLDLFNC 130

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 49.7 bits (119), Expect = 1e-07
 Identities = 25/90 (27%), Positives = 46/90 (51%), Gaps = 7/90 (7%)

Query: 11  EKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDL 70
           + L  L  ++ L +N  + +I   + +L  L +L L NN +       LS LT ++++ L
Sbjct: 109 KDLKKL-KSLSLEHNG-ISDI-NGLVHLPQLESLYLGNNKITDITV--LSRLTKLDTLSL 163

Query: 71  SSNMLSGNIPQQLSELTSLEFFDVSDNLLT 100
             N +S +I   L+ LT L+   +S N ++
Sbjct: 164 EDNQIS-DIV-PLAGLTKLQNLYLSKNHIS 191

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 47.7 bits (114), Expect = 6e-07
 Identities = 31/100 (31%), Positives = 55/100 (55%), Gaps = 8/100 (8%)

Query: 2   SNKGTELEY-EKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLS 60
            NK T+++    L NL   + L  N  V ++ +S+ +LK L++L L +N +   I   L 
Sbjct: 77  GNKLTDIKPLANLKNL-GWLFLDENK-VKDL-SSLKDLKKLKSLSLEHNGIS-DIN-GLV 131

Query: 61  NLTAIESMDLSSNMLSGNIPQQLSELTSLEFFDVSDNLLT 100
           +L  +ES+ L +N ++ +I   LS LT L+   + DN ++
Sbjct: 132 HLPQLESLYLGNNKIT-DI-TVLSRLTKLDTLSLEDNQIS 169

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 42.0 bits (99), Expect = 5e-05
 Identities = 12/85 (14%), Positives = 34/85 (40%), Gaps = 6/85 (7%)

Query: 16  LITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNML 75
           L +  I      + +I  S          +L   ++   +    + L +I+ +  +++ +
Sbjct: 3   LGSETITVPTP-IKQI-FSDDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDI 58

Query: 76  SGNIPQQLSELTSLEFFDVSDNLLT 100
             ++ Q +  L ++    ++ N LT
Sbjct: 59  K-SV-QGIQYLPNVTKLFLNGNKLT 81

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 41.6 bits (98), Expect = 8e-05
 Identities = 21/92 (22%), Positives = 39/92 (42%), Gaps = 8/92 (8%)

Query: 11  EKLSNL--ITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESM 68
              + L  I  II +N+  +  +   I  L  +  L L+ N L   I   L+NL  +  +
Sbjct: 40  VTQNELNSIDQIIANNSD-IKSV-QGIQYLPNVTKLFLNGNKLT-DIK-PLANLKNLGWL 95

Query: 69  DLSSNMLSGNIPQQLSELTSLEFFDVSDNLLT 100
            L  N +  ++   L +L  L+   +  N ++
Sbjct: 96  FLDENKVK-DL-SSLKDLKKLKSLSLEHNGIS 125

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 41.2 bits (97), Expect = 9e-05
 Identities = 25/102 (24%), Positives = 46/102 (45%), Gaps = 6/102 (5%)

Query: 2   SNKGTELEY-EKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLS 60
           +NK T++    +L+ L   + L +N  + +I   +A L  L+NL LS N++   +  +L+
Sbjct: 143 NNKITDITVLSRLTKL-DTLSLEDNQ-ISDIV-PLAGLTKLQNLYLSKNHIS-DLR-ALA 197

Query: 61  NLTAIESMDLSSNMLSGNIPQQLSELTSLEFFDVSDNLLTGP 102
            L  ++ ++L S           S L        +D  L  P
Sbjct: 198 GLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTP 239

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 49.7 bits (119), Expect = 2e-07
 Identities = 23/111 (20%), Positives = 38/111 (34%), Gaps = 7/111 (6%)

Query: 2   SNKGTELE---YEKLSNLITAIILSNNSFVGEIPTSI-ANLKGLRNLDLSNNNLQGRIPL 57
            N   EL    + +L +L   + +   +    I  +    L  L  L L  N        
Sbjct: 39  LNSIAELNETSFSRLQDL-QFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETG 97

Query: 58  SLSNLTAIESMDLSSNML-SGNIPQQL-SELTSLEFFDVSDNLLTGPIPRG 106
           + + L  +E + L+   L    +       LTSLE   + DN +    P  
Sbjct: 98  AFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPAS 148

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 47.0 bits (112), Expect = 1e-06
 Identities = 30/119 (25%), Positives = 45/119 (37%), Gaps = 10/119 (8%)

Query: 11  EKLSNLITAIILSNNSFVGEIPTSI-ANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMD 69
              ++L   + L+ N    +I  +    L  L  L+LS N L         NL  +E +D
Sbjct: 296 SHFTDL-EQLTLAQNEIN-KIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLD 353

Query: 70  LSSNMLSGNIPQQL-SELTSLEFFDVSDNLLTGPIPRGKQFDTFGKSS---FDGNPGLC 124
           LS N +   +  Q    L +L+   +  N L   +P G  FD            NP  C
Sbjct: 354 LSYNHIR-ALGDQSFLGLPNLKELALDTNQLKS-VPDG-IFDRLTSLQKIWLHTNPWDC 409

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 39.3 bits (92), Expect = 5e-04
 Identities = 15/74 (20%), Positives = 26/74 (35%), Gaps = 7/74 (9%)

Query: 28  VGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQL-SEL 86
           V E+P  +        +DLS N++      S S L  ++ + +        I       L
Sbjct: 25  VPELPAHV------NYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGL 78

Query: 87  TSLEFFDVSDNLLT 100
           +SL    +  N   
Sbjct: 79  SSLIILKLDYNQFL 92

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 47.4 bits (113), Expect = 8e-07
 Identities = 30/108 (27%), Positives = 47/108 (43%), Gaps = 8/108 (7%)

Query: 2   SNKGTELE-YEKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSL- 59
             + T+L+    L  L   + LS+N     +P     L  L  LD+S N L   +PL   
Sbjct: 64  RAELTKLQVDGTLPVL-GTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGAL 120

Query: 60  SNLTAIESMDLSSNMLSGNIPQQL-SELTSLEFFDVSDNLLTGPIPRG 106
             L  ++ + L  N L   +P  L +    LE   +++N LT  +P G
Sbjct: 121 RGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNNLTE-LPAG 166

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 38.5 bits (90), Expect = 6e-04
 Identities = 17/79 (21%), Positives = 27/79 (34%), Gaps = 5/79 (6%)

Query: 22  LSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQ 81
               +    +P  +   K    L LS N L      +L   T +  ++L    L+  +  
Sbjct: 17  CDKRNL-TALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQ- 71

Query: 82  QLSELTSLEFFDVSDNLLT 100
               L  L   D+S N L 
Sbjct: 72  VDGTLPVLGTLDLSHNQLQ 90

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 47.4 bits (113), Expect = 9e-07
 Identities = 20/109 (18%), Positives = 44/109 (40%), Gaps = 9/109 (8%)

Query: 12  KLSNLITAIILSNNSFVGEIPTSI-ANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDL 70
            L+ L    + + ++F  +I     A L  L  L++  ++LQ   P SL ++  +  + L
Sbjct: 147 HLTKLQILRVGNMDTFT-KIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLIL 205

Query: 71  SSNMLSGNIPQQL-SELTSLEFFDVSDNLLTGP----IPRGKQFDTFGK 114
                   + +      +S+E  ++ D  L       +  G + ++  K
Sbjct: 206 HMKQHI-LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTG-ETNSLIK 252

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 44.7 bits (106), Expect = 7e-06
 Identities = 24/86 (27%), Positives = 43/86 (50%), Gaps = 6/86 (6%)

Query: 22  LSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQ 81
            S+ S    IP+ +   + +++LDLSNN +       L     ++++ L+SN ++  I +
Sbjct: 38  GSSGSL-NSIPSGL--TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN-TIEE 93

Query: 82  QL-SELTSLEFFDVSDNLLTGPIPRG 106
              S L SLE  D+S N L+  +   
Sbjct: 94  DSFSSLGSLEHLDLSYNYLSN-LSSS 118

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 43.6 bits (103), Expect = 2e-05
 Identities = 15/95 (15%), Positives = 38/95 (40%), Gaps = 12/95 (12%)

Query: 12  KLSNLITAIILSNNSFVGEIPTSI--------ANLKGLRNLDLSNNNLQGRIPLSLSNLT 63
             S++   + L +        + +              RN+ +++ +L  ++   L+ ++
Sbjct: 220 VTSSV-ECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF-QVMKLLNQIS 277

Query: 64  AIESMDLSSNMLSGNIPQQ-LSELTSLEFFDVSDN 97
            +  ++ S N L  ++P      LTSL+   +  N
Sbjct: 278 GLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTN 311

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 42.8 bits (101), Expect = 3e-05
 Identities = 17/115 (14%), Positives = 45/115 (39%), Gaps = 12/115 (10%)

Query: 2   SNKGTELEYEKLSNL--ITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQG----RI 55
           ++     E + L ++  ++ +IL     +  +   +     +  L+L + +L       +
Sbjct: 183 ASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSEL 242

Query: 56  P----LSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEFFDVSDNLLTGPIPRG 106
                 SL       ++ ++   L   + + L++++ L   + S N L   +P G
Sbjct: 243 STGETNSLIKKFTFRNVKITDESLF-QVMKLLNQISGLLELEFSRNQLKS-VPDG 295

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 39.7 bits (93), Expect = 3e-04
 Identities = 22/98 (22%), Positives = 41/98 (41%), Gaps = 6/98 (6%)

Query: 12  KLSNLITAIILSNNSFVGEIPTSI-ANLKGLRNLDLSNNNLQGRIPLSL-SNLTAIESMD 69
            L +L   + LS N  +  + +S    L  L  L+L  N  +     SL S+LT ++ + 
Sbjct: 98  SLGSL-EHLDLSYNY-LSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILR 155

Query: 70  LSSNMLSGNIPQQ-LSELTSLEFFDVSDNLLTGPIPRG 106
           + +      I ++  + LT LE  ++  + L       
Sbjct: 156 VGNMDTFTKIQRKDFAGLTFLEELEIDASDLQS-YEPK 192

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 45.1 bits (107), Expect = 3e-06
 Identities = 20/93 (21%), Positives = 42/93 (45%), Gaps = 12/93 (12%)

Query: 11  EKLSNLITAIILSNNSFVGEIPTSIANLKGLRN---LDLSNNNLQGRIPLSLSNLTAIES 67
             L      + LS N+        I++L G+ N   L L  N ++ +I    +    +E 
Sbjct: 45  STLKAC-KHLALSTNNI-----EKISSLSGMENLRILSLGRNLIK-KIENLDAVADTLEE 97

Query: 68  MDLSSNMLSGNIPQQLSELTSLEFFDVSDNLLT 100
           + +S N ++ ++   + +L +L    +S+N +T
Sbjct: 98  LWISYNQIA-SL-SGIEKLVNLRVLYMSNNKIT 128

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 42.0 bits (99), Expect = 4e-05
 Identities = 24/95 (25%), Positives = 45/95 (47%), Gaps = 11/95 (11%)

Query: 6   TELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAI 65
           TE E  +L  +I  I         ++  +++ LK  ++L LS NN++ +I  SLS +  +
Sbjct: 23  TEAEKVELHGMIPPI--------EKMDATLSTLKACKHLALSTNNIE-KIS-SLSGMENL 72

Query: 66  ESMDLSSNMLSGNIPQQLSELTSLEFFDVSDNLLT 100
             + L  N++   I    +   +LE   +S N + 
Sbjct: 73  RILSLGRNLIK-KIENLDAVADTLEELWISYNQIA 106

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 45.4 bits (108), Expect = 3e-06
 Identities = 21/100 (21%), Positives = 43/100 (43%), Gaps = 9/100 (9%)

Query: 2   SNKGTELEY-EKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLS 60
           ++    L   +  +NL   + LS+N  + ++ + + +L  L  L ++ N L+    +  +
Sbjct: 50  NSNIQSLAGMQFFTNLKE-LHLSHNQ-ISDL-SPLKDLTKLEELSVNRNRLKNLNGIPSA 106

Query: 61  NLTAIESMDLSSNMLSGNIPQQLSELTSLEFFDVSDNLLT 100
            L     + L +N L       L  L +LE   + +N L 
Sbjct: 107 CL---SRLFLDNNELRDTDS--LIHLKNLEILSIRNNKLK 141

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 45.4 bits (108), Expect = 4e-06
 Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 7/90 (7%)

Query: 11  EKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDL 70
             L+N      L   S V ++  S   L G++N +  N+N+Q  +   +   T ++ + L
Sbjct: 16  PGLANA-VKQNLGKQS-VTDL-VSQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHL 70

Query: 71  SSNMLSGNIPQQLSELTSLEFFDVSDNLLT 100
           S N +S ++   L +LT LE   V+ N L 
Sbjct: 71  SHNQIS-DLS-PLKDLTKLEELSVNRNRLK 98

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 41.2 bits (97), Expect = 9e-05
 Identities = 8/80 (10%), Positives = 31/80 (38%), Gaps = 6/80 (7%)

Query: 21  ILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIP 80
           I      + ++      L      +L   ++   +      L+ +++ +  ++ +  ++ 
Sbjct: 3   IQRPTP-INQV-FPDPGLANAVKQNLGKQSVTDLVS--QKELSGVQNFNGDNSNIQ-SL- 56

Query: 81  QQLSELTSLEFFDVSDNLLT 100
             +   T+L+   +S N ++
Sbjct: 57  AGMQFFTNLKELHLSHNQIS 76

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 45.7 bits (107), Expect = 4e-06
 Identities = 11/85 (12%), Positives = 31/85 (36%), Gaps = 8/85 (9%)

Query: 8   LEYEKLSNLITAIILSNNSFVGEIPTSIAN---LKGLRNLDLSNNNLQGR----IPLSLS 60
              ++  NL   + + +      +         L  L  +D+S   L       +   + 
Sbjct: 246 FSKDRFPNL-KWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVD 304

Query: 61  NLTAIESMDLSSNMLSGNIPQQLSE 85
            +  ++ +++  N LS  + ++L +
Sbjct: 305 KIKHLKFINMKYNYLSDEMKKELQK 329

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 42.3 bits (100), Expect = 2e-05
 Identities = 14/92 (15%), Positives = 34/92 (36%), Gaps = 4/92 (4%)

Query: 9   EYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESM 68
           +Y         + L     +  I    A L     +D S+N ++ ++      L  ++++
Sbjct: 14  QYTNAVRD-RELDLRGYK-IPVIENLGATLDQFDAIDFSDNEIR-KLD-GFPLLRRLKTL 69

Query: 69  DLSSNMLSGNIPQQLSELTSLEFFDVSDNLLT 100
            +++N +          L  L    +++N L 
Sbjct: 70  LVNNNRICRIGEGLDQALPDLTELILTNNSLV 101

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 38.1 bits (89), Expect = 7e-04
 Identities = 20/97 (20%), Positives = 35/97 (36%), Gaps = 15/97 (15%)

Query: 11  EKLSNL------ITAIILSNNSFVGEIPTSIAN---LKGLRNLDLSNNNLQGRIPLSLSN 61
             + NL        AI  S+N         +     L+ L+ L ++NN +          
Sbjct: 32  PVIENLGATLDQFDAIDFSDNEI-----RKLDGFPLLRRLKTLLVNNNRICRIGEGLDQA 86

Query: 62  LTAIESMDLSSNMLSG-NIPQQLSELTSLEFFDVSDN 97
           L  +  + L++N L        L+ L SL +  +  N
Sbjct: 87  LPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRN 123

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 41.9 bits (99), Expect = 4e-05
 Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 3/90 (3%)

Query: 18  TAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSG 77
           T I L  N+     P + +  K LR +DLSNN +    P +   L ++ S+ L  N ++ 
Sbjct: 35  TEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT- 93

Query: 78  NIPQQL-SELTSLEFFDVSDNLLTGPIPRG 106
            +P+ L   L SL+   ++ N +   +   
Sbjct: 94  ELPKSLFEGLFSLQLLLLNANKINC-LRVD 122

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 38.5 bits (90), Expect = 6e-04
 Identities = 19/88 (21%), Positives = 39/88 (44%), Gaps = 5/88 (5%)

Query: 12  KLSNLITAIILSNNSFVGEIPTSI-ANLKGLRNLDLSNNNLQGRIPL-SLSNLTAIESMD 69
            L +L  +++L  N    E+P S+   L  L+ L L+ N +   + + +  +L  +  + 
Sbjct: 78  GLRSL-NSLVLYGNKIT-ELPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLS 134

Query: 70  LSSNMLSGNIPQQLSELTSLEFFDVSDN 97
           L  N L        S L +++   ++ N
Sbjct: 135 LYDNKLQTIAKGTFSPLRAIQTMHLAQN 162

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 41.6 bits (98), Expect = 5e-05
 Identities = 22/91 (24%), Positives = 39/91 (42%), Gaps = 4/91 (4%)

Query: 18  TAIILSNNSFVGEIPTSI-ANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLS 76
             + L+NN F     T I   L  LR ++ SNN +      +    + +  + L+SN L 
Sbjct: 35  AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLE 94

Query: 77  GNIPQQL-SELTSLEFFDVSDNLLTGPIPRG 106
            N+  ++   L SL+   +  N +T  +   
Sbjct: 95  -NVQHKMFKGLESLKTLMLRSNRITC-VGND 123

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 41.5 bits (98), Expect = 7e-05
 Identities = 17/71 (23%), Positives = 29/71 (40%), Gaps = 8/71 (11%)

Query: 31  IPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQL-SELTSL 89
           +P S       +NLDLS N L+     S  +   ++ +DLS   +   I       L+ L
Sbjct: 26  LPFS------TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHL 78

Query: 90  EFFDVSDNLLT 100
               ++ N + 
Sbjct: 79  STLILTGNPIQ 89

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 40.4 bits (95), Expect = 1e-04
 Identities = 16/87 (18%), Positives = 35/87 (40%), Gaps = 4/87 (4%)

Query: 17  ITAIILSNNSFVGEIPT-SIANLKGLRNLDLSNNNLQGRIPL-SLSNLTAIESMDLSSNM 74
              + L        IP+ + +NL  +  + +S +    ++   S  NL+ +  +++ +  
Sbjct: 33  TQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTR 91

Query: 75  LSGNIPQQ-LSELTSLEFFDVSDNLLT 100
               I    L EL  L+F  + +  L 
Sbjct: 92  NLTYIDPDALKELPLLKFLGIFNTGLK 118

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 39.2 bits (92), Expect = 3e-04
 Identities = 17/93 (18%), Positives = 33/93 (35%), Gaps = 7/93 (7%)

Query: 13  LSNLITAIILSNNSFVGEIPTSI-ANLKGLRNLDLSNNNLQGRIP--LSLSNLTAIESMD 69
           LS +   I + N   +  I       L  L+ L + N  L+   P    + +      ++
Sbjct: 79  LSKVTH-IEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILE 136

Query: 70  LSSNMLSGNIPQQ-LSELTS-LEFFDVSDNLLT 100
           ++ N    +IP      L +      + +N  T
Sbjct: 137 ITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT 169

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 40.0 bits (94), Expect = 2e-04
 Identities = 29/90 (32%), Positives = 44/90 (48%), Gaps = 5/90 (5%)

Query: 22  LSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQ 81
           L  N F   +P  ++N K L  +DLSNN +      S SN+T + ++ LS N L   IP 
Sbjct: 38  LDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLR-CIPP 95

Query: 82  QL-SELTSLEFFDVSDNLLTGPIPRGKQFD 110
           +    L SL    +  N ++  +P G  F+
Sbjct: 96  RTFDGLKSLRLLSLHGNDISV-VPEGA-FN 123

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 40.6 bits (95), Expect = 2e-04
 Identities = 26/103 (25%), Positives = 50/103 (48%), Gaps = 5/103 (4%)

Query: 12  KLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLS 71
            +S+L T  +  N+        + A  + +  L+LS+N L G +   L     ++ +DL 
Sbjct: 401 NMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLH 458

Query: 72  SNMLSGNIPQQLSELTSLEFFDVSDNLLTGPIPRGKQFDTFGK 114
           +N +  +IP+ ++ L +L+  +V+ N L   +P G  FD    
Sbjct: 459 NNRIM-SIPKDVTHLQALQELNVASNQLKS-VPDG-VFDRLTS 498

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 38.7 bits (90), Expect = 7e-04
 Identities = 19/73 (26%), Positives = 36/73 (49%), Gaps = 3/73 (4%)

Query: 2   SNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPL-SLS 60
           SN  T   +  L   +  + L NN     IP  + +L+ L+ L++++N L+  +P     
Sbjct: 437 SNMLTGSVFRCLPPKVKVLDLHNNRI-MSIPKDVTHLQALQELNVASNQLK-SVPDGVFD 494

Query: 61  NLTAIESMDLSSN 73
            LT+++ + L  N
Sbjct: 495 RLTSLQYIWLHDN 507

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 39.2 bits (92), Expect = 4e-04
 Identities = 22/79 (27%), Positives = 33/79 (41%), Gaps = 13/79 (16%)

Query: 31  IPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSN---MLSGNIPQQLSELT 87
           IP         + LDL +N L      +   LT +  + L+ N    L   I ++L  L 
Sbjct: 35  IPAD------TKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLE 88

Query: 88  SLEFFDVSDNLLTGPIPRG 106
           +L    V+DN L   +P G
Sbjct: 89  TL---WVTDNKLQA-LPIG 103

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 38.4 bits (90), Expect = 8e-04
 Identities = 31/116 (26%), Positives = 50/116 (43%), Gaps = 10/116 (8%)

Query: 11  EKLSNLITAIILSNNSFVGEIPTSI-ANLKGLRNLDLSNNNLQGRIPLSL-SNLTAIESM 68
           ++L NL   + L  N     +P  +  +L  L  L L  N LQ  +P  +   LT+++ +
Sbjct: 106 DQLVNL-AELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLTSLKEL 162

Query: 69  DLSSNMLSGNIPQQLSELTSLEFFDVSDNLLTGPIPRGKQFDTFGKSSF---DGNP 121
            L +N L         +LT L+   + +N L   +P G  FD+  K        NP
Sbjct: 163 RLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKR-VPEG-AFDSLEKLKMLQLQENP 216

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 39.3 bits (92), Expect = 4e-04
 Identities = 16/110 (14%), Positives = 40/110 (36%), Gaps = 13/110 (11%)

Query: 4   KGTELEYEKLSNLITAIILSNNSF----VGEIPTSIANLKGLRNLDLSNNNL-----QGR 54
           +    +  K +  + +II   N      + E   +  + + L  + +  N +     +  
Sbjct: 148 ELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHL 207

Query: 55  IPLSLSNLTAIESMDLSSNMLSGN----IPQQLSELTSLEFFDVSDNLLT 100
           +   L+    ++ +DL  N  +      +   L    +L    ++D LL+
Sbjct: 208 LLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLS 257

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	207
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.85
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.77
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.76
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.76
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.75
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.73
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.73
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.72
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.71
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.69
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.69
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.69
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.68
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.68
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.67
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.67
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.67
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.65
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.64
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.64
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.63
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.63
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.62
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.62
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.61
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.6
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.59
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.59
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.59
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.58
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.57
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.57
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.57
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.57
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.56
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.55
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.54
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.54
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.54
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.54
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.53
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.52
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.51
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.51
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.51
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.51
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.5
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.5
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.5
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.5
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.5
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.5
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.49
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.49
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.48
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.48
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.48
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.48
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.48
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.47
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.47
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.47
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.47
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.47
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.46
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.46
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.46
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.45
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.45
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.45
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.45
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.45
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.45
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.45
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.44
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.44
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.43
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.43
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.43
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.43
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.42
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.42
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.42
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.42
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.41
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.4
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.4
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.4
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.39
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.39
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.39
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.38
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.38
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.37
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.37
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.35
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.35
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.35
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.35
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.34
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.33
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.33
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.33
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.32
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.32
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.32
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.31
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.3
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.3
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.27
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.25
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.25
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.23
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.23
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.21
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.19
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.14
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.12
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.12
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.12
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.12
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.12
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.04
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	98.99
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	98.98
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.97
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	98.97
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	98.97
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	98.95
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	98.94
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	98.9
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	98.87
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	98.85
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	98.84
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.82
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.61
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	98.6
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	98.57
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.54
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.43
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.35
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.15
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	98.12
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.12
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.01
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.95
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	97.88
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	97.85
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	97.73
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.54
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.51
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	97.38
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	97.38
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	97.31
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	97.2
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	96.57
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	96.39
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	96.08
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	96.02
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	95.84
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	95.77
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	95.41
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	94.45
2ks1_B	44	Epidermal growth factor receptor; ERBB1, ERBB2, tr	94.34
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	94.14
2l2t_A	44	Receptor tyrosine-protein kinase ERBB-4; transmemb	92.66
2jwa_A	44	Receptor tyrosine-protein kinase ERBB-2; transmemb	88.96
2k1k_A	38	Ephrin type-A receptor 1; EPHA1, receptor tyrosine	83.76
2k9y_A	41	Ephrin type-A receptor 2; receptor tyrosine kinase	83.14

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.85  E-value=1.4e-21  Score=174.75  Aligned_cols=125  Identities=42%  Similarity=0.680  Sum_probs=117.8

Q ss_pred             hhcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCccce
Q 046642           12 KLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEF   91 (207)
Q Consensus        12 ~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~   91 (207)
                      ..+++|+.|||++|.++|.+|..++++++|+.|+|++|.++|.+|..++++++|+.||+++|.++|.+|..+..+++|++
T Consensus       629 ~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~  708 (768)
T 3rgz_A          629 DNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTE  708 (768)
T ss_dssp             SSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSE
T ss_pred             hccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCE
Confidence            34678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ecCCCCcCcCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCCCCCC
Q 046642           92 FDVSDNLLTGPIPRGKQFDTFGKSSFDGNPGLCGGPLSKKCDNSEA  137 (207)
Q Consensus        92 l~l~~N~l~~~~p~~~~~~~l~~~~~~~n~~~c~~~~~~~C~~~~~  137 (207)
                      |++++|+++|.+|...++.++...+|.|||.+||.|.. .|....+
T Consensus       709 L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~-~C~~~~~  753 (768)
T 3rgz_A          709 IDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLP-RCDPSNA  753 (768)
T ss_dssp             EECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTSC-CCCSCC-
T ss_pred             EECcCCcccccCCCchhhccCCHHHhcCCchhcCCCCc-CCCCCcc
Confidence            99999999999999999999999999999999999886 8975543

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.77  E-value=1.6e-18  Score=130.43  Aligned_cols=117  Identities=25%  Similarity=0.348  Sum_probs=104.5

Q ss_pred             hhhcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCccc
Q 046642           11 EKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLE   90 (207)
Q Consensus        11 ~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~   90 (207)
                      ..++++++.|++++|.|+ .+|..|..+++|+.|+|++|.+++..+..|..+++|+.|++++|.+++..|..|..+++|+
T Consensus        27 ~~~~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~  105 (193)
T 2wfh_A           27 KGIPRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLR  105 (193)
T ss_dssp             SCCCTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCC
T ss_pred             CCCCCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCC
Confidence            346789999999999999 7889999999999999999999988788899999999999999999988888899999999


Q ss_pred             eecCCCCcCcCCCCC-CCCCCCCCcccccCCCCCCCCCC
Q 046642           91 FFDVSDNLLTGPIPR-GKQFDTFGKSSFDGNPGLCGGPL  128 (207)
Q Consensus        91 ~l~l~~N~l~~~~p~-~~~~~~l~~~~~~~n~~~c~~~~  128 (207)
                      .|++++|.+++..+. ...+..+..+++.+||+.|+|..
T Consensus       106 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c~l  144 (193)
T 2wfh_A          106 LLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDCNM  144 (193)
T ss_dssp             EEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECSGGG
T ss_pred             EEECCCCCCCeeChhhhhcCccccEEEeCCCCeecCCcC
Confidence            999999999965443 34577888999999999998853

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.76  E-value=2.3e-18  Score=129.36  Aligned_cols=117  Identities=20%  Similarity=0.318  Sum_probs=104.4

Q ss_pred             hhcccccEEEccCCCCCCCCch-hccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCccc
Q 046642           12 KLSNLITAIILSNNSFVGEIPT-SIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLE   90 (207)
Q Consensus        12 ~~l~~L~~L~Ls~n~i~~~~p~-~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~   90 (207)
                      .++.+++.|++++|.|++..+. .|..+++|+.|+|++|.+++..|..|..+++|+.|++++|.+++..|..|..+++|+
T Consensus        26 ~~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~  105 (192)
T 1w8a_A           26 DIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLK  105 (192)
T ss_dssp             CCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCC
T ss_pred             CCCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCC
Confidence            4566899999999999966554 489999999999999999988899999999999999999999988888899999999


Q ss_pred             eecCCCCcCcCCCCCC-CCCCCCCcccccCCCCCCCCCC
Q 046642           91 FFDVSDNLLTGPIPRG-KQFDTFGKSSFDGNPGLCGGPL  128 (207)
Q Consensus        91 ~l~l~~N~l~~~~p~~-~~~~~l~~~~~~~n~~~c~~~~  128 (207)
                      +|++++|++++..|.. ..+..+..+++.+|++.|+|+.
T Consensus       106 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l  144 (192)
T 1w8a_A          106 TLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHL  144 (192)
T ss_dssp             EEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGG
T ss_pred             EEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcc
Confidence            9999999999887754 4567888999999999998864

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.76  E-value=3.2e-18  Score=131.26  Aligned_cols=118  Identities=19%  Similarity=0.239  Sum_probs=102.6

Q ss_pred             hhhcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCccc
Q 046642           11 EKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLE   90 (207)
Q Consensus        11 ~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~   90 (207)
                      +..+++|+.|+|++|.|++..+..|..+++|+.|+|++|.+++..+..|..+++|+.|++++|.+++..|..|..+++|+
T Consensus        53 ~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~  132 (220)
T 2v70_A           53 FKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVR  132 (220)
T ss_dssp             GGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCS
T ss_pred             hccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCC
Confidence            45688899999999999977777899999999999999999977777899999999999999999988888899999999


Q ss_pred             eecCCCCcCcCCCCCC-CCCCCCCcccccCCCCCCCCCC
Q 046642           91 FFDVSDNLLTGPIPRG-KQFDTFGKSSFDGNPGLCGGPL  128 (207)
Q Consensus        91 ~l~l~~N~l~~~~p~~-~~~~~l~~~~~~~n~~~c~~~~  128 (207)
                      .|++++|.+++..|.. ..+..+..+++.+|++.|+|+.
T Consensus       133 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l  171 (220)
T 2v70_A          133 LLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCYL  171 (220)
T ss_dssp             EEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGGG
T ss_pred             EEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCch
Confidence            9999999999776654 4567788889999999998764

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.75  E-value=4e-18  Score=130.73  Aligned_cols=118  Identities=19%  Similarity=0.218  Sum_probs=92.9

Q ss_pred             hhhcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCccc
Q 046642           11 EKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLE   90 (207)
Q Consensus        11 ~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~   90 (207)
                      +..+++|+.|+|++|.|++..|..|.++++|+.|+|++|.++...+..|..+++|+.|++++|.+++..|..|..+++|+
T Consensus        52 ~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~  131 (220)
T 2v9t_B           52 FSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLN  131 (220)
T ss_dssp             STTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             hhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCC
Confidence            34567788888888888877788888888888888888888855555577888888888888888877778888888888


Q ss_pred             eecCCCCcCcCCCCC-CCCCCCCCcccccCCCCCCCCCC
Q 046642           91 FFDVSDNLLTGPIPR-GKQFDTFGKSSFDGNPGLCGGPL  128 (207)
Q Consensus        91 ~l~l~~N~l~~~~p~-~~~~~~l~~~~~~~n~~~c~~~~  128 (207)
                      .|++++|.+++..+. ...+..+..+++.+|++.|+|..
T Consensus       132 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~l  170 (220)
T 2v9t_B          132 LLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCHL  170 (220)
T ss_dssp             EEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSGGG
T ss_pred             EEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCCcc
Confidence            888888888865554 34466778888899999887753

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.73  E-value=1.2e-18  Score=157.35  Aligned_cols=92  Identities=30%  Similarity=0.380  Sum_probs=67.9

Q ss_pred             hhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCccceecCCCCcCcCCCCCCCCCCCC
Q 046642           33 TSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEFFDVSDNLLTGPIPRGKQFDTF  112 (207)
Q Consensus        33 ~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~~~~~l  112 (207)
                      ..|.++++|+.|+|++|.+++..|..|..+++|+.|++++|.+++..|..+.  ++|+.|++++|++++..|..  +..+
T Consensus       474 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~--~~~L  549 (844)
T 3j0a_A          474 DVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDV--FVSL  549 (844)
T ss_dssp             SCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCC--CSSC
T ss_pred             hhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhH--hCCc
Confidence            3456667777777777777766666777777788888888877765555444  67778888888887766653  4577


Q ss_pred             CcccccCCCCCCCCCC
Q 046642          113 GKSSFDGNPGLCGGPL  128 (207)
Q Consensus       113 ~~~~~~~n~~~c~~~~  128 (207)
                      ..+++.+||+.|+|+.
T Consensus       550 ~~l~l~~Np~~C~c~~  565 (844)
T 3j0a_A          550 SVLDITHNKFICECEL  565 (844)
T ss_dssp             CEEEEEEECCCCSSSC
T ss_pred             CEEEecCCCccccccc
Confidence            8889999999998864

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.73  E-value=3.6e-17  Score=120.99  Aligned_cols=117  Identities=21%  Similarity=0.213  Sum_probs=102.0

Q ss_pred             hhhcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCccc
Q 046642           11 EKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLE   90 (207)
Q Consensus        11 ~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~   90 (207)
                      ..++++|+.|++++|.+++..+..|..+++|+.|++++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|+
T Consensus        24 ~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~  103 (177)
T 2o6r_A           24 TGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLK  103 (177)
T ss_dssp             TTCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             CCCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccC
Confidence            45678999999999999977777789999999999999999966667789999999999999999977777789999999


Q ss_pred             eecCCCCcCcCCCCCC-CCCCCCCcccccCCCCCCCCC
Q 046642           91 FFDVSDNLLTGPIPRG-KQFDTFGKSSFDGNPGLCGGP  127 (207)
Q Consensus        91 ~l~l~~N~l~~~~p~~-~~~~~l~~~~~~~n~~~c~~~  127 (207)
                      .|++++|.+++..+.. ..+..+..+++.+|++.|.++
T Consensus       104 ~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A          104 ELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             EEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             EEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence            9999999999655443 456788899999999998774

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.72  E-value=7.4e-17  Score=124.35  Aligned_cols=115  Identities=19%  Similarity=0.231  Sum_probs=74.6

Q ss_pred             hhcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCccce
Q 046642           12 KLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEF   91 (207)
Q Consensus        12 ~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~   91 (207)
                      ..+++|+.|+|++|.|+...+..|..+++|+.|+|++|.+++..+..|..+++|+.|++++|.++ .+|..+..+++|+.
T Consensus        61 ~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~  139 (229)
T 3e6j_A           61 DSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTH  139 (229)
T ss_dssp             TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSE
T ss_pred             hCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCE
Confidence            34556666666666666444445566666666666666666554555666677777777777776 56666667777777


Q ss_pred             ecCCCCcCcCCCCC-CCCCCCCCcccccCCCCCCCCC
Q 046642           92 FDVSDNLLTGPIPR-GKQFDTFGKSSFDGNPGLCGGP  127 (207)
Q Consensus        92 l~l~~N~l~~~~p~-~~~~~~l~~~~~~~n~~~c~~~  127 (207)
                      |++++|.+++..+. ...+..+..+.+.+||+.|.|+
T Consensus       140 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  176 (229)
T 3e6j_A          140 LALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR  176 (229)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred             EECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence            77777777744332 2345666777788888888764

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.71  E-value=1.3e-17  Score=134.32  Aligned_cols=114  Identities=30%  Similarity=0.510  Sum_probs=102.5

Q ss_pred             ccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCccceecCCC
Q 046642           17 ITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEFFDVSD   96 (207)
Q Consensus        17 L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l~l~~   96 (207)
                      |+.|++++|.+++..|..|..+++|+.|++++|.+++.+|. +..+++|+.|++++|.+++.+|..+..+++|+.|++++
T Consensus       199 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~  277 (313)
T 1ogq_A          199 LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSF  277 (313)
T ss_dssp             CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCS
T ss_pred             ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcC
Confidence            88888888888888888888999999999999999866655 88899999999999999999999999999999999999


Q ss_pred             CcCcCCCCCCCCCCCCCcccccCCCCCCCCCCCCCC
Q 046642           97 NLLTGPIPRGKQFDTFGKSSFDGNPGLCGGPLSKKC  132 (207)
Q Consensus        97 N~l~~~~p~~~~~~~l~~~~~~~n~~~c~~~~~~~C  132 (207)
                      |+++|.+|....++.+..+++.+|+++|+.|.. .|
T Consensus       278 N~l~~~ip~~~~l~~L~~l~l~~N~~lc~~p~~-~C  312 (313)
T 1ogq_A          278 NNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLP-AC  312 (313)
T ss_dssp             SEEEEECCCSTTGGGSCGGGTCSSSEEESTTSS-CC
T ss_pred             CcccccCCCCccccccChHHhcCCCCccCCCCC-CC
Confidence            999999999888889999999999999998765 46

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.69  E-value=3.5e-16  Score=118.51  Aligned_cols=116  Identities=22%  Similarity=0.219  Sum_probs=82.7

Q ss_pred             hhcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCccce
Q 046642           12 KLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEF   91 (207)
Q Consensus        12 ~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~   91 (207)
                      ..+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|+.
T Consensus        49 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~  128 (208)
T 2o6s_A           49 DELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKD  128 (208)
T ss_dssp             TTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             cccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCE
Confidence            44667777777777777555555677777777777777777555555677777888888888777665556777778888


Q ss_pred             ecCCCCcCcCCCCC-CCCCCCCCcccccCCCCCCCCC
Q 046642           92 FDVSDNLLTGPIPR-GKQFDTFGKSSFDGNPGLCGGP  127 (207)
Q Consensus        92 l~l~~N~l~~~~p~-~~~~~~l~~~~~~~n~~~c~~~  127 (207)
                      |++++|.+++..+. ...+..+..+++.+|++.|.++
T Consensus       129 L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  165 (208)
T 2o6s_A          129 LRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP  165 (208)
T ss_dssp             EECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCCTT
T ss_pred             EECCCCccceeCHHHhccCCCccEEEecCCCeecCCC
Confidence            88888877754443 2445677777888888887765

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.69  E-value=2.5e-16  Score=125.53  Aligned_cols=114  Identities=24%  Similarity=0.247  Sum_probs=81.4

Q ss_pred             hcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCcccee
Q 046642           13 LSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEFF   92 (207)
Q Consensus        13 ~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l   92 (207)
                      .+++|+.|++++|.|++..|..|..+++|+.|++++|++++..+..|..+++|+.|++++|.+++..+..+..+++|+.|
T Consensus        98 ~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L  177 (290)
T 1p9a_G           98 TLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTL  177 (290)
T ss_dssp             TCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEE
T ss_pred             cCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEE
Confidence            45667777777777776656667777777777777777775555666777777777777777775544556677778888


Q ss_pred             cCCCCcCcCCCCC-CCCCCCCCcccccCCCCCCCCC
Q 046642           93 DVSDNLLTGPIPR-GKQFDTFGKSSFDGNPGLCGGP  127 (207)
Q Consensus        93 ~l~~N~l~~~~p~-~~~~~~l~~~~~~~n~~~c~~~  127 (207)
                      ++++|.++ .+|. ......+..+.+.+||+.|+|.
T Consensus       178 ~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C~c~  212 (290)
T 1p9a_G          178 LLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNCE  212 (290)
T ss_dssp             ECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCSGG
T ss_pred             ECCCCcCC-ccChhhcccccCCeEEeCCCCccCcCc
Confidence            88888777 3443 3344567778889999999874

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.69  E-value=3.9e-16  Score=121.69  Aligned_cols=87  Identities=23%  Similarity=0.226  Sum_probs=42.0

Q ss_pred             cccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCccceec
Q 046642           14 SNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEFFD   93 (207)
Q Consensus        14 l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l~   93 (207)
                      +++|++|+|++|.|++..+..|..+++|+.|++++|.+++..+..|..+++|+.|++++|.+++..+..+..+++|+.|+
T Consensus        58 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~  137 (251)
T 3m19_A           58 LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELR  137 (251)
T ss_dssp             CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             cccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEE
Confidence            44555555555555544444455555555555555555433334444444444444444444433333344444444444


Q ss_pred             CCCCcCc
Q 046642           94 VSDNLLT  100 (207)
Q Consensus        94 l~~N~l~  100 (207)
                      +++|.++
T Consensus       138 Ls~N~l~  144 (251)
T 3m19_A          138 LNTNQLQ  144 (251)
T ss_dssp             CCSSCCC
T ss_pred             CcCCcCC
Confidence            4444444

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.68  E-value=3.5e-16  Score=115.25  Aligned_cols=108  Identities=23%  Similarity=0.240  Sum_probs=70.7

Q ss_pred             ccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCccceecCCC
Q 046642           17 ITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEFFDVSD   96 (207)
Q Consensus        17 L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l~l~~   96 (207)
                      .+.+++++|.++ .+|..+  .++|+.|+|++|.+++..|..|..+++|+.|++++|.|++..+..|..+++|++|++++
T Consensus        11 ~~~l~~s~n~l~-~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~   87 (170)
T 3g39_A           11 GTTVDCSGKSLA-SVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND   87 (170)
T ss_dssp             TTEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEeCCCCcC-ccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence            356777777776 455544  26677777777777766666677777777777777777755555566777777777777


Q ss_pred             CcCcCCCCC-CCCCCCCCcccccCCCCCCCCC
Q 046642           97 NLLTGPIPR-GKQFDTFGKSSFDGNPGLCGGP  127 (207)
Q Consensus        97 N~l~~~~p~-~~~~~~l~~~~~~~n~~~c~~~  127 (207)
                      |++++..+. ...+..+..+++.+|++.|.|+
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~  119 (170)
T 3g39_A           88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS  119 (170)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred             CccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence            777754443 2345566666777777777653

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.68  E-value=5e-16  Score=122.52  Aligned_cols=115  Identities=22%  Similarity=0.232  Sum_probs=66.1

Q ss_pred             hcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCcccee
Q 046642           13 LSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEFF   92 (207)
Q Consensus        13 ~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l   92 (207)
                      .+++|++|++++|.+++..+..|..+++|+.|++++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|+.|
T Consensus       107 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  186 (272)
T 3rfs_A          107 KLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDL  186 (272)
T ss_dssp             TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             CCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEE
Confidence            34555555665555554444445555666666666666654444445556666666666666665544455566666666


Q ss_pred             cCCCCcCcCCCCCC-CCCCCCCcccccCCCCCCCCC
Q 046642           93 DVSDNLLTGPIPRG-KQFDTFGKSSFDGNPGLCGGP  127 (207)
Q Consensus        93 ~l~~N~l~~~~p~~-~~~~~l~~~~~~~n~~~c~~~  127 (207)
                      ++++|.+++..|.. ..+..+..+++.+|++.|.|+
T Consensus       187 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  222 (272)
T 3rfs_A          187 RLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP  222 (272)
T ss_dssp             ECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred             ECCCCcCCccCHHHHhCCcCCCEEEccCCCccccCc
Confidence            66666666544432 345556666666666666654

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.67  E-value=7e-16  Score=121.49  Aligned_cols=116  Identities=20%  Similarity=0.209  Sum_probs=71.8

Q ss_pred             hhcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCccce
Q 046642           12 KLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEF   91 (207)
Q Consensus        12 ~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~   91 (207)
                      ..+++|++|++++|.+++..+..|..+++|+.|++++|.+++..+..|..+++|+.|++++|.+++..+..|..+++|+.
T Consensus       106 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  185 (270)
T 2o6q_A          106 DQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKT  185 (270)
T ss_dssp             TTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCE
T ss_pred             ccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCE
Confidence            34455666666666666555555566666666666666666444444666666677777777666555555666677777


Q ss_pred             ecCCCCcCcCCCCC-CCCCCCCCcccccCCCCCCCCC
Q 046642           92 FDVSDNLLTGPIPR-GKQFDTFGKSSFDGNPGLCGGP  127 (207)
Q Consensus        92 l~l~~N~l~~~~p~-~~~~~~l~~~~~~~n~~~c~~~  127 (207)
                      |++++|.+++..+. ...+..+..+++.+||+.|+|.
T Consensus       186 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  222 (270)
T 2o6q_A          186 LKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCN  222 (270)
T ss_dssp             EECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSS
T ss_pred             EECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCc
Confidence            77777777643332 2335566667777777777664

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.67  E-value=1.6e-16  Score=137.97  Aligned_cols=119  Identities=20%  Similarity=0.242  Sum_probs=104.5

Q ss_pred             hhhhcccccEEEccCCCCC-CCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCc
Q 046642           10 YEKLSNLITAIILSNNSFV-GEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTS   88 (207)
Q Consensus        10 ~~~~l~~L~~L~Ls~n~i~-~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~   88 (207)
                      ....++.++.|++++|.+. +..|..|..+++|+.|+|++|++++..|..|.++++|+.|+|++|+|++..|..|..+++
T Consensus       464 ~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~  543 (635)
T 4g8a_A          464 IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNS  543 (635)
T ss_dssp             TTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTT
T ss_pred             ccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCC
Confidence            3456788999999999754 457788999999999999999999888999999999999999999999888889999999


Q ss_pred             cceecCCCCcCcCCCCCCC-CC-CCCCcccccCCCCCCCCCC
Q 046642           89 LEFFDVSDNLLTGPIPRGK-QF-DTFGKSSFDGNPGLCGGPL  128 (207)
Q Consensus        89 L~~l~l~~N~l~~~~p~~~-~~-~~l~~~~~~~n~~~c~~~~  128 (207)
                      |+.|++++|++++..|... .+ ..+..+++++||+.|+|..
T Consensus       544 L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~~  585 (635)
T 4g8a_A          544 LQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEH  585 (635)
T ss_dssp             CCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGGG
T ss_pred             CCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCCc
Confidence            9999999999998877653 23 5688899999999999953

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.67  E-value=3.5e-16  Score=117.37  Aligned_cols=94  Identities=17%  Similarity=0.256  Sum_probs=88.6

Q ss_pred             hhhcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCccc
Q 046642           11 EKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLE   90 (207)
Q Consensus        11 ~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~   90 (207)
                      +..+++|++|+|++|.|++..|..|..+++|+.|+|++|++++..|..|..+++|+.|++++|.+++..|..+..+++|+
T Consensus        50 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~  129 (192)
T 1w8a_A           50 FGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLT  129 (192)
T ss_dssp             GGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCC
T ss_pred             cccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCC
Confidence            56788999999999999988899999999999999999999988888899999999999999999998899999999999


Q ss_pred             eecCCCCcCcCCCC
Q 046642           91 FFDVSDNLLTGPIP  104 (207)
Q Consensus        91 ~l~l~~N~l~~~~p  104 (207)
                      .|++++|++++..+
T Consensus       130 ~L~L~~N~l~c~c~  143 (192)
T 1w8a_A          130 SLNLASNPFNCNCH  143 (192)
T ss_dssp             EEECTTCCBCCSGG
T ss_pred             EEEeCCCCccCcCc
Confidence            99999999998765

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.65  E-value=1.2e-15  Score=112.92  Aligned_cols=107  Identities=21%  Similarity=0.256  Sum_probs=69.7

Q ss_pred             cEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCccceecCCCC
Q 046642           18 TAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEFFDVSDN   97 (207)
Q Consensus        18 ~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l~l~~N   97 (207)
                      +.+++++|.++ .+|..+.  ++|+.|+|++|.+++..|..|..+++|+.|+|++|.|++..+..|..+++|+.|++++|
T Consensus        15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N   91 (174)
T 2r9u_A           15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN   91 (174)
T ss_dssp             SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence            56677777775 5565543  66777777777777666666777777777777777777554445666777777777777


Q ss_pred             cCcCCCCC-CCCCCCCCcccccCCCCCCCCC
Q 046642           98 LLTGPIPR-GKQFDTFGKSSFDGNPGLCGGP  127 (207)
Q Consensus        98 ~l~~~~p~-~~~~~~l~~~~~~~n~~~c~~~  127 (207)
                      .+++..+. ...+..+..+++.+|++.|.|.
T Consensus        92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~  122 (174)
T 2r9u_A           92 HLKSIPRGAFDNLKSLTHIYLYNNPWDCECR  122 (174)
T ss_dssp             CCCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred             ccceeCHHHhccccCCCEEEeCCCCcccccc
Confidence            77744443 3345566666777777766553

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.64  E-value=8.4e-16  Score=113.20  Aligned_cols=94  Identities=21%  Similarity=0.222  Sum_probs=85.7

Q ss_pred             hhhcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCccc
Q 046642           11 EKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLE   90 (207)
Q Consensus        11 ~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~   90 (207)
                      ..++++++.|+|++|.|++..|..|..+++|+.|+|++|++++..+..|..+++|+.|++++|.|++..+..|..+++|+
T Consensus        26 ~~~~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~  105 (170)
T 3g39_A           26 TGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLT  105 (170)
T ss_dssp             SCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             ccCCCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCC
Confidence            34678999999999999988899999999999999999999977777789999999999999999977777899999999


Q ss_pred             eecCCCCcCcCCCC
Q 046642           91 FFDVSDNLLTGPIP  104 (207)
Q Consensus        91 ~l~l~~N~l~~~~p  104 (207)
                      .|++++|++++..+
T Consensus       106 ~L~L~~N~~~c~c~  119 (170)
T 3g39_A          106 HIWLLNNPWDCACS  119 (170)
T ss_dssp             EEECCSSCBCTTBG
T ss_pred             EEEeCCCCCCCCch
Confidence            99999999997665

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.64  E-value=7.7e-16  Score=129.29  Aligned_cols=118  Identities=22%  Similarity=0.179  Sum_probs=101.8

Q ss_pred             hhhcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCccc
Q 046642           11 EKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLE   90 (207)
Q Consensus        11 ~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~   90 (207)
                      ...+++|+.|++++|.+++..|..|..+++|+.|++++|.+++..|..+..+++|+.|++++|.+++..|..+..+++|+
T Consensus       295 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~  374 (455)
T 3v47_A          295 FSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLK  374 (455)
T ss_dssp             TTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred             cccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhcccccccc
Confidence            34567899999999999987788899999999999999999877788899999999999999999988788899999999


Q ss_pred             eecCCCCcCcCCCCCC-CCCCCCCcccccCCCCCCCCCC
Q 046642           91 FFDVSDNLLTGPIPRG-KQFDTFGKSSFDGNPGLCGGPL  128 (207)
Q Consensus        91 ~l~l~~N~l~~~~p~~-~~~~~l~~~~~~~n~~~c~~~~  128 (207)
                      +|++++|++++..+.. ..+..+..+++.+|++.|+|+.
T Consensus       375 ~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~  413 (455)
T 3v47_A          375 ELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  413 (455)
T ss_dssp             EEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred             EEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCc
Confidence            9999999999654433 4677888999999999999873

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.63  E-value=2.5e-15  Score=115.79  Aligned_cols=111  Identities=23%  Similarity=0.272  Sum_probs=97.2

Q ss_pred             hhhcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCccc
Q 046642           11 EKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLE   90 (207)
Q Consensus        11 ~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~   90 (207)
                      ..++++|+.|+|++|.|++..|..|..+++|+.|+|++|.++...+..|..+++|+.|++++|.+++..+..|..+++|+
T Consensus        36 ~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~  115 (229)
T 3e6j_A           36 AGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLK  115 (229)
T ss_dssp             SCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             CCCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhC
Confidence            35678999999999999988899999999999999999999866667789999999999999999977777789999999


Q ss_pred             eecCCCCcCcCCCCCC-CCCCCCCcccccCCCC
Q 046642           91 FFDVSDNLLTGPIPRG-KQFDTFGKSSFDGNPG  122 (207)
Q Consensus        91 ~l~l~~N~l~~~~p~~-~~~~~l~~~~~~~n~~  122 (207)
                      .|++++|.++ .+|.. ..+..+..+++.+|..
T Consensus       116 ~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l  147 (229)
T 3e6j_A          116 ELFMCCNKLT-ELPRGIERLTHLTHLALDQNQL  147 (229)
T ss_dssp             EEECCSSCCC-SCCTTGGGCTTCSEEECCSSCC
T ss_pred             eEeccCCccc-ccCcccccCCCCCEEECCCCcC
Confidence            9999999999 55543 4567788888888854

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.63  E-value=1.7e-15  Score=116.06  Aligned_cols=112  Identities=23%  Similarity=0.262  Sum_probs=98.3

Q ss_pred             hhhcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCccc
Q 046642           11 EKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLE   90 (207)
Q Consensus        11 ~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~   90 (207)
                      ..++++++.|++++|.|++..+..|..+++|+.|+|++|.+++..|..|..+++|+.|++++|.++...+..|..+++|+
T Consensus        28 ~~l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~  107 (220)
T 2v9t_B           28 TNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQ  107 (220)
T ss_dssp             SSCCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             CccCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCC
Confidence            34667899999999999977777899999999999999999988899999999999999999999966666789999999


Q ss_pred             eecCCCCcCcCCCCCC-CCCCCCCcccccCCCC
Q 046642           91 FFDVSDNLLTGPIPRG-KQFDTFGKSSFDGNPG  122 (207)
Q Consensus        91 ~l~l~~N~l~~~~p~~-~~~~~l~~~~~~~n~~  122 (207)
                      .|++++|.+++..|.. ..+..+..+++.+|..
T Consensus       108 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l  140 (220)
T 2v9t_B          108 LLLLNANKINCLRVDAFQDLHNLNLLSLYDNKL  140 (220)
T ss_dssp             EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             EEECCCCCCCEeCHHHcCCCCCCCEEECCCCcC
Confidence            9999999999776653 4567788888888864

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.62  E-value=2.3e-15  Score=111.34  Aligned_cols=94  Identities=20%  Similarity=0.211  Sum_probs=84.0

Q ss_pred             hhhcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCccc
Q 046642           11 EKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLE   90 (207)
Q Consensus        11 ~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~   90 (207)
                      ..++++|+.|+|++|.|++..|..|..+++|+.|+|++|++++..+..|..+++|+.|++++|.|++..+..|..+++|+
T Consensus        29 ~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~  108 (174)
T 2r9u_A           29 AGIPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLT  108 (174)
T ss_dssp             SCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCS
T ss_pred             CCcCCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCC
Confidence            34678999999999999988899999999999999999999966666689999999999999999966666699999999


Q ss_pred             eecCCCCcCcCCCC
Q 046642           91 FFDVSDNLLTGPIP  104 (207)
Q Consensus        91 ~l~l~~N~l~~~~p  104 (207)
                      .|++++|++.+..+
T Consensus       109 ~L~L~~N~~~c~~~  122 (174)
T 2r9u_A          109 HIYLYNNPWDCECR  122 (174)
T ss_dssp             EEECCSSCBCTTBG
T ss_pred             EEEeCCCCcccccc
Confidence            99999999986544

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.62  E-value=1.1e-15  Score=132.68  Aligned_cols=118  Identities=18%  Similarity=0.054  Sum_probs=97.5

Q ss_pred             cchhhhhhhcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhh
Q 046642            5 GTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLS   84 (207)
Q Consensus         5 ~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~   84 (207)
                      +.+..+..++.++++|||++|.|++..|..|.++++|++|+|++|++++..|..|.++++|++|+|++|+|++..+..|.
T Consensus        42 ~l~~vP~~lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~  121 (635)
T 4g8a_A           42 NFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFS  121 (635)
T ss_dssp             CCSSCCSSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGT
T ss_pred             CcCccCCCCCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhc
Confidence            44444556778899999999999977778899999999999999999977777899999999999999999976667889


Q ss_pred             cCCccceecCCCCcCcCCCCC-CCCCCCCCcccccCCCC
Q 046642           85 ELTSLEFFDVSDNLLTGPIPR-GKQFDTFGKSSFDGNPG  122 (207)
Q Consensus        85 ~l~~L~~l~l~~N~l~~~~p~-~~~~~~l~~~~~~~n~~  122 (207)
                      ++++|++|++++|++++..+. ...+..++.+++.+|..
T Consensus       122 ~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l  160 (635)
T 4g8a_A          122 GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLI  160 (635)
T ss_dssp             TCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCC
T ss_pred             CCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCcc
Confidence            999999999999999865543 34566777777777753

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.61  E-value=9.1e-16  Score=121.56  Aligned_cols=90  Identities=19%  Similarity=0.156  Sum_probs=48.2

Q ss_pred             hcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCcccee
Q 046642           13 LSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEFF   92 (207)
Q Consensus        13 ~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l   92 (207)
                      .+++|++|++++|.+++..|..|..+++|+.|++++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|+.|
T Consensus       103 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  182 (285)
T 1ozn_A          103 GLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRL  182 (285)
T ss_dssp             TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred             CCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEE
Confidence            34555666666666655555555555555556555555554444445555555555555555553333345555555555


Q ss_pred             cCCCCcCcCC
Q 046642           93 DVSDNLLTGP  102 (207)
Q Consensus        93 ~l~~N~l~~~  102 (207)
                      ++++|.+++.
T Consensus       183 ~l~~n~l~~~  192 (285)
T 1ozn_A          183 LLHQNRVAHV  192 (285)
T ss_dssp             ECCSSCCCEE
T ss_pred             ECCCCccccc
Confidence            5555555443

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.60  E-value=2.9e-15  Score=125.78  Aligned_cols=116  Identities=21%  Similarity=0.205  Sum_probs=100.5

Q ss_pred             hhhcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCccc
Q 046642           11 EKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLE   90 (207)
Q Consensus        11 ~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~   90 (207)
                      +..+++|+.|++++|.++ .+| .+..+++|+.|+|++|.+++..|..|..+++|+.|++++|.+++..+..|..+++|+
T Consensus       181 ~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  258 (440)
T 3zyj_A          181 FEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLV  258 (440)
T ss_dssp             TTTCSSCCEEECTTSCCS-SCC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCC
T ss_pred             hhcccccCeecCCCCcCc-ccc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCC
Confidence            445788999999999998 555 478899999999999999988889999999999999999999988888899999999


Q ss_pred             eecCCCCcCcCCCCCC-CCCCCCCcccccCCCCCCCCCC
Q 046642           91 FFDVSDNLLTGPIPRG-KQFDTFGKSSFDGNPGLCGGPL  128 (207)
Q Consensus        91 ~l~l~~N~l~~~~p~~-~~~~~l~~~~~~~n~~~c~~~~  128 (207)
                      .|++++|++++..+.. ..+..+..+++.+||+.|+|..
T Consensus       259 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~l  297 (440)
T 3zyj_A          259 EINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCDI  297 (440)
T ss_dssp             EEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECSSTT
T ss_pred             EEECCCCCCCccChhHhccccCCCEEEcCCCCccCCCCc
Confidence            9999999999655443 4567888999999999999954

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.59  E-value=9.5e-15  Score=113.79  Aligned_cols=112  Identities=17%  Similarity=0.163  Sum_probs=98.8

Q ss_pred             hhhcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCccc
Q 046642           11 EKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLE   90 (207)
Q Consensus        11 ~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~   90 (207)
                      ..++++++.|++++|.+++..+..|..+++|+.|++++|.+++..|..|..+++|+.|++++|.+++..+..+..+++|+
T Consensus        31 ~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  110 (251)
T 3m19_A           31 SGIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLD  110 (251)
T ss_dssp             SCCCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred             CCCCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCC
Confidence            34678899999999999988888999999999999999999988888899999999999999999977778899999999


Q ss_pred             eecCCCCcCcCCCCCC-CCCCCCCcccccCCCC
Q 046642           91 FFDVSDNLLTGPIPRG-KQFDTFGKSSFDGNPG  122 (207)
Q Consensus        91 ~l~l~~N~l~~~~p~~-~~~~~l~~~~~~~n~~  122 (207)
                      .|++++|.+++..+.. ..+..+..+++.+|..
T Consensus       111 ~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l  143 (251)
T 3m19_A          111 KLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQL  143 (251)
T ss_dssp             EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             EEEcCCCcCCCcChhHhccCCcccEEECcCCcC
Confidence            9999999999655543 4567788888888854

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.59  E-value=4.3e-15  Score=120.81  Aligned_cols=107  Identities=17%  Similarity=0.172  Sum_probs=85.2

Q ss_pred             EEEccCC-CCCCCCchhccCCCCCCEEECcC-CcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCccceecCCC
Q 046642           19 AIILSNN-SFVGEIPTSIANLKGLRNLDLSN-NNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEFFDVSD   96 (207)
Q Consensus        19 ~L~Ls~n-~i~~~~p~~~~~l~~L~~L~Ls~-n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l~l~~   96 (207)
                      .++.+++ .++ .+|. +..+++|+.|+|++ |.+++..+..|..+++|+.|+|++|.|++..|..|..+++|+.|+|++
T Consensus        12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~   89 (347)
T 2ifg_A           12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF   89 (347)
T ss_dssp             CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred             EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence            4678887 787 5777 88888888889886 888877777888888888899988888887788888888888889988


Q ss_pred             CcCcCCCCCCCCCCCCCcccccCCCCCCCCC
Q 046642           97 NLLTGPIPRGKQFDTFGKSSFDGNPGLCGGP  127 (207)
Q Consensus        97 N~l~~~~p~~~~~~~l~~~~~~~n~~~c~~~  127 (207)
                      |+|++..+.......+..+.+.+|++.|+|.
T Consensus        90 N~l~~~~~~~~~~~~L~~l~l~~N~~~c~c~  120 (347)
T 2ifg_A           90 NALESLSWKTVQGLSLQELVLSGNPLHCSCA  120 (347)
T ss_dssp             SCCSCCCSTTTCSCCCCEEECCSSCCCCCGG
T ss_pred             CccceeCHHHcccCCceEEEeeCCCccCCCc
Confidence            8888655444333347778888888888874

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.59  E-value=1.5e-14  Score=109.44  Aligned_cols=112  Identities=21%  Similarity=0.167  Sum_probs=96.6

Q ss_pred             hhhcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCccc
Q 046642           11 EKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLE   90 (207)
Q Consensus        11 ~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~   90 (207)
                      ..+++++++|++++|.+++..+..|..+++|+.|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|+
T Consensus        24 ~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  103 (208)
T 2o6s_A           24 TGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLK  103 (208)
T ss_dssp             SCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             CCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCC
Confidence            45678899999999999977777789999999999999999966666789999999999999999977667789999999


Q ss_pred             eecCCCCcCcCCCCCC-CCCCCCCcccccCCCC
Q 046642           91 FFDVSDNLLTGPIPRG-KQFDTFGKSSFDGNPG  122 (207)
Q Consensus        91 ~l~l~~N~l~~~~p~~-~~~~~l~~~~~~~n~~  122 (207)
                      .|++++|.+++..+.. ..+..+..+++.+|..
T Consensus       104 ~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l  136 (208)
T 2o6s_A          104 ELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQL  136 (208)
T ss_dssp             EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             EEEcCCCcCcccCHhHhccCCcCCEEECCCCcc
Confidence            9999999999665543 4567888888888854

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.58  E-value=2.2e-14  Score=113.02  Aligned_cols=108  Identities=19%  Similarity=0.240  Sum_probs=60.8

Q ss_pred             hhcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCccce
Q 046642           12 KLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEF   91 (207)
Q Consensus        12 ~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~   91 (207)
                      ..+++|++|++++|.+++ + ..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|++
T Consensus        60 ~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  137 (272)
T 3rfs_A           60 QYLPNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTY  137 (272)
T ss_dssp             GGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred             ccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCE
Confidence            345566666666666653 2 24556666666666666666444445566666666666666666554445556666666


Q ss_pred             ecCCCCcCcCCCCCC-CCCCCCCcccccCCC
Q 046642           92 FDVSDNLLTGPIPRG-KQFDTFGKSSFDGNP  121 (207)
Q Consensus        92 l~l~~N~l~~~~p~~-~~~~~l~~~~~~~n~  121 (207)
                      |++++|.+++..+.. ..+..+..+++.+|.
T Consensus       138 L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~  168 (272)
T 3rfs_A          138 LNLAHNQLQSLPKGVFDKLTNLTELDLSYNQ  168 (272)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             EECCCCccCccCHHHhccCccCCEEECCCCC
Confidence            666666665433332 234455555555553

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.57  E-value=9.6e-15  Score=111.83  Aligned_cols=111  Identities=19%  Similarity=0.181  Sum_probs=96.7

Q ss_pred             hhcccccEEEccCCCCCCCCc-hhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCccc
Q 046642           12 KLSNLITAIILSNNSFVGEIP-TSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLE   90 (207)
Q Consensus        12 ~~l~~L~~L~Ls~n~i~~~~p-~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~   90 (207)
                      .++..++.|+|++|.|++..| ..|..+++|+.|+|++|.+++..+..|..+++|+.|++++|.+++..+..|..+++|+
T Consensus        29 ~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~  108 (220)
T 2v70_A           29 HIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLK  108 (220)
T ss_dssp             CCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCC
T ss_pred             CCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCC
Confidence            456788999999999997644 4588999999999999999977777999999999999999999988888899999999


Q ss_pred             eecCCCCcCcCCCCCC-CCCCCCCcccccCCCC
Q 046642           91 FFDVSDNLLTGPIPRG-KQFDTFGKSSFDGNPG  122 (207)
Q Consensus        91 ~l~l~~N~l~~~~p~~-~~~~~l~~~~~~~n~~  122 (207)
                      .|++++|.+++..|.. ..+..+..+++.+|..
T Consensus       109 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l  141 (220)
T 2v70_A          109 TLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQI  141 (220)
T ss_dssp             EEECTTSCCCCBCTTSSTTCTTCSEEECTTSCC
T ss_pred             EEECCCCcCCeECHhHcCCCccCCEEECCCCcC
Confidence            9999999999876654 4567788888888854

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.57  E-value=2.5e-15  Score=130.50  Aligned_cols=116  Identities=21%  Similarity=0.170  Sum_probs=94.9

Q ss_pred             hhcccccEEEccCCCCCC-CCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCccc
Q 046642           12 KLSNLITAIILSNNSFVG-EIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLE   90 (207)
Q Consensus        12 ~~l~~L~~L~Ls~n~i~~-~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~   90 (207)
                      ..+++|+.|++++|.+++ ..|..|..+++|+.|++++|.+++..|..+..+++|+.|++++|.+++..|..+..+++|+
T Consensus       445 ~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~  524 (606)
T 3vq2_A          445 LGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLS  524 (606)
T ss_dssp             TTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCC
T ss_pred             cCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCC
Confidence            456778888888888876 3677788888888888888888877788888899999999999999887788889999999


Q ss_pred             eecCCCCcCcCCCCCC-CCCC-CCCcccccCCCCCCCCCC
Q 046642           91 FFDVSDNLLTGPIPRG-KQFD-TFGKSSFDGNPGLCGGPL  128 (207)
Q Consensus        91 ~l~l~~N~l~~~~p~~-~~~~-~l~~~~~~~n~~~c~~~~  128 (207)
                      .|++++|+++ .+|.. ..+. .+..+++.+||+.|+|+.
T Consensus       525 ~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~~  563 (606)
T 3vq2_A          525 TLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICEH  563 (606)
T ss_dssp             EEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSSTT
T ss_pred             EEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCcc
Confidence            9999999988 45543 3343 478889999999999875

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.57  E-value=6.4e-15  Score=124.06  Aligned_cols=116  Identities=17%  Similarity=0.182  Sum_probs=100.9

Q ss_pred             hhhcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCccc
Q 046642           11 EKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLE   90 (207)
Q Consensus        11 ~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~   90 (207)
                      +..+++|+.|++++|.+++ +| .+..+++|+.|+|++|.+++..|..|..+++|+.|++++|.+++..|..|..+++|+
T Consensus       192 ~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  269 (452)
T 3zyi_A          192 FEGLFNLKYLNLGMCNIKD-MP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLV  269 (452)
T ss_dssp             TTTCTTCCEEECTTSCCSS-CC-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred             ccCCCCCCEEECCCCcccc-cc-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCC
Confidence            4467889999999999984 44 478899999999999999988899999999999999999999988888999999999


Q ss_pred             eecCCCCcCcCCCCCC-CCCCCCCcccccCCCCCCCCCC
Q 046642           91 FFDVSDNLLTGPIPRG-KQFDTFGKSSFDGNPGLCGGPL  128 (207)
Q Consensus        91 ~l~l~~N~l~~~~p~~-~~~~~l~~~~~~~n~~~c~~~~  128 (207)
                      .|++++|++++..+.. ..+..+..+++.+||+.|+|..
T Consensus       270 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~~  308 (452)
T 3zyi_A          270 ELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCDI  308 (452)
T ss_dssp             EEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECSTTT
T ss_pred             EEECCCCcCCccChHHhccccCCCEEEccCCCcCCCCCc
Confidence            9999999999655443 3567788999999999999964

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.57  E-value=3.8e-15  Score=119.03  Aligned_cols=110  Identities=18%  Similarity=0.179  Sum_probs=63.8

Q ss_pred             hhcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCC-CCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCccc
Q 046642           12 KLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQG-RIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLE   90 (207)
Q Consensus        12 ~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~-~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~   90 (207)
                      ..+++|++|++++|.+++..+..+..+++|+.|++++|.+++ ..|..+..+++|+.|++++|.+++..|..+..+++|+
T Consensus       123 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  202 (306)
T 2z66_A          123 LSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQ  202 (306)
T ss_dssp             TTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred             hhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCC
Confidence            345566666666666665555556666666666666666653 3555566666666666666666655555566666666


Q ss_pred             eecCCCCcCcCCCCC-CCCCCCCCcccccCCC
Q 046642           91 FFDVSDNLLTGPIPR-GKQFDTFGKSSFDGNP  121 (207)
Q Consensus        91 ~l~l~~N~l~~~~p~-~~~~~~l~~~~~~~n~  121 (207)
                      .|++++|.+++..+. ...+..+..+++.+|.
T Consensus       203 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~  234 (306)
T 2z66_A          203 VLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNH  234 (306)
T ss_dssp             EEECTTSCCSBCCSGGGTTCTTCCEEECTTSC
T ss_pred             EEECCCCccCccChhhccCcccCCEeECCCCC
Confidence            666666666543331 1233445555555554

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.56  E-value=7.7e-15  Score=105.33  Aligned_cols=109  Identities=17%  Similarity=0.240  Sum_probs=94.0

Q ss_pred             hhhcccccEEEccCCCCC-CCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCcc
Q 046642           11 EKLSNLITAIILSNNSFV-GEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSL   89 (207)
Q Consensus        11 ~~~l~~L~~L~Ls~n~i~-~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L   89 (207)
                      ...+++++.|++++|.++ +.+|..+..+++|+.|++++|.+++.  ..+..+++|+.|++++|.+++.+|..+..+++|
T Consensus        13 ~~~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L   90 (149)
T 2je0_A           13 NRTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNL   90 (149)
T ss_dssp             TCCGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTC
T ss_pred             cCCCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCC
Confidence            345688999999999998 78898899999999999999999855  788999999999999999997789888889999


Q ss_pred             ceecCCCCcCcCCC--CCCCCCCCCCcccccCCC
Q 046642           90 EFFDVSDNLLTGPI--PRGKQFDTFGKSSFDGNP  121 (207)
Q Consensus        90 ~~l~l~~N~l~~~~--p~~~~~~~l~~~~~~~n~  121 (207)
                      +.|++++|.+++..  +....++.+..+++.+|+
T Consensus        91 ~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~  124 (149)
T 2je0_A           91 THLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCE  124 (149)
T ss_dssp             CEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCG
T ss_pred             CEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCc
Confidence            99999999998632  334456677888888875

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.55  E-value=1.3e-14  Score=109.09  Aligned_cols=109  Identities=18%  Similarity=0.193  Sum_probs=80.4

Q ss_pred             hhhhcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCcc
Q 046642           10 YEKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSL   89 (207)
Q Consensus        10 ~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L   89 (207)
                      ....+++|++|++++|.++  .+..+..+++|+.|++++|.+++..|..+..+++|+.|++++|.+++..|..+..+++|
T Consensus        61 ~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L  138 (197)
T 4ezg_A           61 GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKV  138 (197)
T ss_dssp             TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSC
T ss_pred             HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCC
Confidence            3455677888888888665  23467778888888888888876667778888888888888888886677778888888


Q ss_pred             ceecCCCCc-CcCCCCCCCCCCCCCcccccCCC
Q 046642           90 EFFDVSDNL-LTGPIPRGKQFDTFGKSSFDGNP  121 (207)
Q Consensus        90 ~~l~l~~N~-l~~~~p~~~~~~~l~~~~~~~n~  121 (207)
                      +.|++++|. ++ .+|....++.+..+++.+|.
T Consensus       139 ~~L~L~~n~~i~-~~~~l~~l~~L~~L~l~~n~  170 (197)
T 4ezg_A          139 NSIDLSYNGAIT-DIMPLKTLPELKSLNIQFDG  170 (197)
T ss_dssp             CEEECCSCTBCC-CCGGGGGCSSCCEEECTTBC
T ss_pred             CEEEccCCCCcc-ccHhhcCCCCCCEEECCCCC
Confidence            888888887 44 55555556667777777664

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.54  E-value=1.1e-14  Score=106.48  Aligned_cols=109  Identities=20%  Similarity=0.242  Sum_probs=90.3

Q ss_pred             hhcccccEEEccCCCCC-CCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCccc
Q 046642           12 KLSNLITAIILSNNSFV-GEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLE   90 (207)
Q Consensus        12 ~~l~~L~~L~Ls~n~i~-~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~   90 (207)
                      ..+++|+.|++++|.++ +.+|..+..+++|+.|++++|.+++.  ..+..+++|+.|++++|.+++.+|..+..+++|+
T Consensus        21 ~~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~   98 (168)
T 2ell_A           21 RTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLT   98 (168)
T ss_dssp             SCTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCC
T ss_pred             CCcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCC
Confidence            45678999999999998 67888888899999999999999854  7788899999999999999977888888899999


Q ss_pred             eecCCCCcCcCCC--CCCCCCCCCCcccccCCCC
Q 046642           91 FFDVSDNLLTGPI--PRGKQFDTFGKSSFDGNPG  122 (207)
Q Consensus        91 ~l~l~~N~l~~~~--p~~~~~~~l~~~~~~~n~~  122 (207)
                      .|++++|.+++..  +....+..+..+++.+|+.
T Consensus        99 ~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l  132 (168)
T 2ell_A           99 HLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEV  132 (168)
T ss_dssp             EEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGG
T ss_pred             EEeccCCccCcchhHHHHhcCCCCCEEEeeCCcC
Confidence            9999999998632  3345566778888888754

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.54  E-value=1.2e-14  Score=125.08  Aligned_cols=118  Identities=19%  Similarity=0.226  Sum_probs=103.5

Q ss_pred             hhhcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCC-CCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCcc
Q 046642           11 EKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQ-GRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSL   89 (207)
Q Consensus        11 ~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~-~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L   89 (207)
                      +..+++|+.|++++|.+++..|..|..+++|+.|++++|.++ +.+|..+..+++|+.|++++|.+++..|..+..+++|
T Consensus       417 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L  496 (570)
T 2z63_A          417 FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL  496 (570)
T ss_dssp             TTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred             hhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCC
Confidence            456788999999999999888888999999999999999987 5788899999999999999999998888899999999


Q ss_pred             ceecCCCCcCcCCCCCC-CCCCCCCcccccCCCCCCCCCC
Q 046642           90 EFFDVSDNLLTGPIPRG-KQFDTFGKSSFDGNPGLCGGPL  128 (207)
Q Consensus        90 ~~l~l~~N~l~~~~p~~-~~~~~l~~~~~~~n~~~c~~~~  128 (207)
                      +.|++++|++++..|.. ..+..+..+++.+|++.|+|+.
T Consensus       497 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~  536 (570)
T 2z63_A          497 QVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  536 (570)
T ss_dssp             CEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred             CEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence            99999999999776653 4677888899999999998764

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.54  E-value=4.1e-14  Score=112.73  Aligned_cols=108  Identities=22%  Similarity=0.215  Sum_probs=61.0

Q ss_pred             hcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCcccee
Q 046642           13 LSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEFF   92 (207)
Q Consensus        13 ~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l   92 (207)
                      .+++|+.|++++|.++ .+|..+..+++|+.|++++|++++..|..|..+++|+.|++++|.+++..+..|..+++|+.|
T Consensus        75 ~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L  153 (290)
T 1p9a_G           75 TLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKL  153 (290)
T ss_dssp             CCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred             CCCcCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEE
Confidence            3445555555555555 455555566666666666666664444556666666666666666665444455566666666


Q ss_pred             cCCCCcCcCCCCCC-CCCCCCCcccccCCC
Q 046642           93 DVSDNLLTGPIPRG-KQFDTFGKSSFDGNP  121 (207)
Q Consensus        93 ~l~~N~l~~~~p~~-~~~~~l~~~~~~~n~  121 (207)
                      ++++|++++..+.. ..+..+..+++.+|.
T Consensus       154 ~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~  183 (290)
T 1p9a_G          154 SLANNNLTELPAGLLNGLENLDTLLLQENS  183 (290)
T ss_dssp             ECTTSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             ECCCCcCCccCHHHhcCcCCCCEEECCCCc
Confidence            66666666322222 234455555555554

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.54  E-value=4.2e-14  Score=106.16  Aligned_cols=94  Identities=24%  Similarity=0.216  Sum_probs=85.3

Q ss_pred             hhhhcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCcc
Q 046642           10 YEKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSL   89 (207)
Q Consensus        10 ~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L   89 (207)
                      .+..+++|+.|+|++|.|++..+..|.++++|+.|+|++|.+++..|..|..+++|+.|++++|.++...+..|..+++|
T Consensus        49 ~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L  128 (193)
T 2wfh_A           49 ELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSAL  128 (193)
T ss_dssp             GGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTC
T ss_pred             HhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccc
Confidence            34567899999999999998888889999999999999999998888899999999999999999997666679999999


Q ss_pred             ceecCCCCcCcCCC
Q 046642           90 EFFDVSDNLLTGPI  103 (207)
Q Consensus        90 ~~l~l~~N~l~~~~  103 (207)
                      +.|++++|++.+..
T Consensus       129 ~~L~L~~N~~~C~c  142 (193)
T 2wfh_A          129 SHLAIGANPLYCDC  142 (193)
T ss_dssp             CEEECCSSCEECSG
T ss_pred             cEEEeCCCCeecCC
Confidence            99999999998644

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.53  E-value=4.7e-15  Score=119.29  Aligned_cols=109  Identities=30%  Similarity=0.505  Sum_probs=69.4

Q ss_pred             hhcccccEEEccC-CCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCccc
Q 046642           12 KLSNLITAIILSN-NSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLE   90 (207)
Q Consensus        12 ~~l~~L~~L~Ls~-n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~   90 (207)
                      ..+++|++|++++ |.+++.+|..|..+++|++|++++|.+++.+|..+..+++|++|++++|.+++.+|..+..+++|+
T Consensus        73 ~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~  152 (313)
T 1ogq_A           73 ANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLV  152 (313)
T ss_dssp             GGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCC
T ss_pred             hCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCC
Confidence            3456667777773 666666666677777777777777777666666666677777777777776666666666666777


Q ss_pred             eecCCCCcCcCCCCCC-CCCC-CCCcccccCC
Q 046642           91 FFDVSDNLLTGPIPRG-KQFD-TFGKSSFDGN  120 (207)
Q Consensus        91 ~l~l~~N~l~~~~p~~-~~~~-~l~~~~~~~n  120 (207)
                      +|++++|.+++.+|.. ..+. .+..+++.+|
T Consensus       153 ~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N  184 (313)
T 1ogq_A          153 GITFDGNRISGAIPDSYGSFSKLFTSMTISRN  184 (313)
T ss_dssp             EEECCSSCCEEECCGGGGCCCTTCCEEECCSS
T ss_pred             eEECcCCcccCcCCHHHhhhhhcCcEEECcCC
Confidence            7777777666555543 1222 3444444444

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.52  E-value=2.9e-14  Score=127.48  Aligned_cols=116  Identities=30%  Similarity=0.391  Sum_probs=82.6

Q ss_pred             hhcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCccce
Q 046642           12 KLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEF   91 (207)
Q Consensus        12 ~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~   91 (207)
                      ..+++|+.|++++|.+++.+|..+..+++|+.|++++|.+++.+|..+..+++|+.|++++|.+++.+|..++.+++|+.
T Consensus       439 ~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~  518 (768)
T 3rgz_A          439 GSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAI  518 (768)
T ss_dssp             GGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCE
T ss_pred             hcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCE
Confidence            34566777777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             ecCCCCcCcCCCCCC-CCCCCCCcccccCCCCCCCCC
Q 046642           92 FDVSDNLLTGPIPRG-KQFDTFGKSSFDGNPGLCGGP  127 (207)
Q Consensus        92 l~l~~N~l~~~~p~~-~~~~~l~~~~~~~n~~~c~~~  127 (207)
                      |++++|+++|.+|.. ..+..+..+++.+|+..+..|
T Consensus       519 L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip  555 (768)
T 3rgz_A          519 LKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIP  555 (768)
T ss_dssp             EECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCC
T ss_pred             EECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCC
Confidence            777777777766654 345566777777776655443

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.51  E-value=5e-14  Score=111.01  Aligned_cols=90  Identities=21%  Similarity=0.389  Sum_probs=60.1

Q ss_pred             hhcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCC-CchhhhcCCccc
Q 046642           12 KLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGN-IPQQLSELTSLE   90 (207)
Q Consensus        12 ~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~-~p~~~~~l~~L~   90 (207)
                      ..+++|++|++++|.+++..+..|.++++|+.|++++|.+.+..+..+..+++|+.|++++|.+++. +|..+..+++|+
T Consensus        73 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~  152 (276)
T 2z62_A           73 QSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLE  152 (276)
T ss_dssp             TTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCC
T ss_pred             cCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCC
Confidence            4456777777777777766666677777777777777777655555566677777777777776642 466666666666


Q ss_pred             eecCCCCcCcC
Q 046642           91 FFDVSDNLLTG  101 (207)
Q Consensus        91 ~l~l~~N~l~~  101 (207)
                      .|++++|.+++
T Consensus       153 ~L~Ls~N~l~~  163 (276)
T 2z62_A          153 HLDLSSNKIQS  163 (276)
T ss_dssp             EEECCSSCCCE
T ss_pred             EEECCCCCCCc
Confidence            66666666654

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.51  E-value=6.4e-14  Score=103.39  Aligned_cols=94  Identities=23%  Similarity=0.180  Sum_probs=83.8

Q ss_pred             hhhcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCccc
Q 046642           11 EKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLE   90 (207)
Q Consensus        11 ~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~   90 (207)
                      +..+++|++|++++|.+++..+..|..+++|+.|++++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|+
T Consensus        48 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~  127 (177)
T 2o6r_A           48 FDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQ  127 (177)
T ss_dssp             TTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred             hcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccC
Confidence            35578999999999999977777789999999999999999977777789999999999999999976666678899999


Q ss_pred             eecCCCCcCcCCCC
Q 046642           91 FFDVSDNLLTGPIP  104 (207)
Q Consensus        91 ~l~l~~N~l~~~~p  104 (207)
                      .|++++|++.+..|
T Consensus       128 ~L~l~~N~~~~~~~  141 (177)
T 2o6r_A          128 KIWLHTNPWDCSCP  141 (177)
T ss_dssp             EEECCSSCBCCCHH
T ss_pred             EEEecCCCeeccCc
Confidence            99999999998765

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.51  E-value=3.3e-14  Score=116.50  Aligned_cols=87  Identities=23%  Similarity=0.272  Sum_probs=42.7

Q ss_pred             cccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCccceec
Q 046642           14 SNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEFFD   93 (207)
Q Consensus        14 l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l~   93 (207)
                      +++|+.|+|++|.|++..+..|..+++|+.|+|++|++++..+..|..+++|+.|+|++|.+++..|..|..+++|+.|+
T Consensus        63 l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~  142 (361)
T 2xot_A           63 LTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLY  142 (361)
T ss_dssp             CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred             ccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEE
Confidence            34455555555555544444455555555555555555433334444555555555555555444444444445555555


Q ss_pred             CCCCcCc
Q 046642           94 VSDNLLT  100 (207)
Q Consensus        94 l~~N~l~  100 (207)
                      +++|.++
T Consensus       143 L~~N~l~  149 (361)
T 2xot_A          143 LSQNQIS  149 (361)
T ss_dssp             CCSSCCC
T ss_pred             CCCCcCC
Confidence            5555444

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.51  E-value=5.4e-14  Score=113.88  Aligned_cols=108  Identities=19%  Similarity=0.272  Sum_probs=63.8

Q ss_pred             hcccccEEEccCCCCCCCCchhccC---------CCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhh
Q 046642           13 LSNLITAIILSNNSFVGEIPTSIAN---------LKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQL   83 (207)
Q Consensus        13 ~l~~L~~L~Ls~n~i~~~~p~~~~~---------l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~   83 (207)
                      .+++|++|++++|++.+.+|..+..         +++|+.|++++|.++ .+|..+..+++|+.|++++|.++ .+|..+
T Consensus       148 ~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l  225 (328)
T 4fcg_A          148 SLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAI  225 (328)
T ss_dssp             GCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-CCCGGG
T ss_pred             cCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-cCchhh
Confidence            4556666666666665566655443         666666666666666 55666666666666666666666 344456


Q ss_pred             hcCCccceecCCCCcCcCCCCCC-CCCCCCCcccccCCCC
Q 046642           84 SELTSLEFFDVSDNLLTGPIPRG-KQFDTFGKSSFDGNPG  122 (207)
Q Consensus        84 ~~l~~L~~l~l~~N~l~~~~p~~-~~~~~l~~~~~~~n~~  122 (207)
                      ..+++|+.|++++|.+.+.+|.. ..+..+..+++.+|..
T Consensus       226 ~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~  265 (328)
T 4fcg_A          226 HHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSN  265 (328)
T ss_dssp             GGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTT
T ss_pred             ccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCc
Confidence            66666666666666666555543 3344555555555543

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.50  E-value=2.7e-14  Score=117.91  Aligned_cols=115  Identities=18%  Similarity=0.196  Sum_probs=97.8

Q ss_pred             hhhhhhcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCC
Q 046642            8 LEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELT   87 (207)
Q Consensus         8 ~~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~   87 (207)
                      ......+++|+.|++++|.+++..|..|..+++|+.|++++|.++ .+|..+..+++|+.|++++|.++ .+|..+..++
T Consensus       241 ~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~  318 (390)
T 3o6n_A          241 TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFD  318 (390)
T ss_dssp             CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCC-EEECSSSCCTTCCEEECCSSCCC-CCGGGHHHHT
T ss_pred             cHHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCc-ccCcccCCCCCCCEEECCCCcce-ecCccccccC
Confidence            344566788999999999999888889999999999999999998 56777788999999999999999 6777788899


Q ss_pred             ccceecCCCCcCcCCCCCCCCCCCCCcccccCCCCCCCC
Q 046642           88 SLEFFDVSDNLLTGPIPRGKQFDTFGKSSFDGNPGLCGG  126 (207)
Q Consensus        88 ~L~~l~l~~N~l~~~~p~~~~~~~l~~~~~~~n~~~c~~  126 (207)
                      +|+.|++++|.++.. | ...+..+..+++.+|++.|.+
T Consensus       319 ~L~~L~L~~N~i~~~-~-~~~~~~L~~L~l~~N~~~~~~  355 (390)
T 3o6n_A          319 RLENLYLDHNSIVTL-K-LSTHHTLKNLTLSHNDWDCNS  355 (390)
T ss_dssp             TCSEEECCSSCCCCC-C-CCTTCCCSEEECCSSCEEHHH
T ss_pred             cCCEEECCCCcccee-C-chhhccCCEEEcCCCCccchh
Confidence            999999999999854 4 345678888999999998865

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.50  E-value=4e-14  Score=103.59  Aligned_cols=108  Identities=19%  Similarity=0.189  Sum_probs=91.9

Q ss_pred             hhcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCc-hhhhcCCccc
Q 046642           12 KLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIP-QQLSELTSLE   90 (207)
Q Consensus        12 ~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p-~~~~~l~~L~   90 (207)
                      ..+++|+.|++++|.+++.  ..+..+++|+.|++++|.+++.+|..+..+++|+.|++++|.+++..+ ..+..+++|+
T Consensus        46 ~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~  123 (168)
T 2ell_A           46 AEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLK  123 (168)
T ss_dssp             GGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCC
T ss_pred             HhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCC
Confidence            5678999999999999965  788999999999999999997788888889999999999999995422 6889999999


Q ss_pred             eecCCCCcCcCCCC----CCCCCCCCCcccccCCC
Q 046642           91 FFDVSDNLLTGPIP----RGKQFDTFGKSSFDGNP  121 (207)
Q Consensus        91 ~l~l~~N~l~~~~p----~~~~~~~l~~~~~~~n~  121 (207)
                      .|++++|.+++..+    ....++.+..+++.+|.
T Consensus       124 ~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~  158 (168)
T 2ell_A          124 SLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRE  158 (168)
T ss_dssp             EEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred             EEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCC
Confidence            99999999996554    23456777777777764

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.50  E-value=1.6e-13  Score=107.90  Aligned_cols=108  Identities=20%  Similarity=0.188  Sum_probs=58.2

Q ss_pred             hcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCcccee
Q 046642           13 LSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEFF   92 (207)
Q Consensus        13 ~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l   92 (207)
                      ++++++.|++++|.+++..+..|..+++|++|++++|.++...+..|..+++|+.|++++|.+++..+..+..+++|+.|
T Consensus        35 ~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  114 (270)
T 2o6q_A           35 IPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAEL  114 (270)
T ss_dssp             CCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEE
T ss_pred             CCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEE
Confidence            44556666666666665444456666666666666666653333444556666666666666654444445555555555


Q ss_pred             cCCCCcCcCCCCCC-CCCCCCCcccccCC
Q 046642           93 DVSDNLLTGPIPRG-KQFDTFGKSSFDGN  120 (207)
Q Consensus        93 ~l~~N~l~~~~p~~-~~~~~l~~~~~~~n  120 (207)
                      ++++|.+++..+.. ..+..+..+++.+|
T Consensus       115 ~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n  143 (270)
T 2o6q_A          115 RLDRNQLKSLPPRVFDSLTKLTYLSLGYN  143 (270)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             ECCCCccCeeCHHHhCcCcCCCEEECCCC
Confidence            55555555433322 23344444444444

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.50  E-value=4.2e-14  Score=115.87  Aligned_cols=112  Identities=21%  Similarity=0.173  Sum_probs=97.1

Q ss_pred             hhhcccccEEEccCCCCCCCCchhcc-CCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCcc
Q 046642           11 EKLSNLITAIILSNNSFVGEIPTSIA-NLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSL   89 (207)
Q Consensus        11 ~~~l~~L~~L~Ls~n~i~~~~p~~~~-~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L   89 (207)
                      ..++..++.|+|++|.|++..+..|. .+++|+.|+|++|.+++..+..|..+++|+.|+|++|.+++..+..|..+++|
T Consensus        35 ~~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L  114 (361)
T 2xot_A           35 QSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQAL  114 (361)
T ss_dssp             SSCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTC
T ss_pred             ccCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCC
Confidence            35677899999999999977777787 99999999999999997777889999999999999999997777789999999


Q ss_pred             ceecCCCCcCcCCCCCC-CCCCCCCcccccCCCC
Q 046642           90 EFFDVSDNLLTGPIPRG-KQFDTFGKSSFDGNPG  122 (207)
Q Consensus        90 ~~l~l~~N~l~~~~p~~-~~~~~l~~~~~~~n~~  122 (207)
                      +.|++++|.+++..|.. ..+..+..+++.+|..
T Consensus       115 ~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l  148 (361)
T 2xot_A          115 EVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQI  148 (361)
T ss_dssp             CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred             CEEECCCCcccEECHHHhCCcccCCEEECCCCcC
Confidence            99999999999765543 4567778888888754

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.50  E-value=1.6e-14  Score=125.38  Aligned_cols=114  Identities=21%  Similarity=0.245  Sum_probs=76.0

Q ss_pred             hcccccEEEccCCCCCCC---CchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCcc
Q 046642           13 LSNLITAIILSNNSFVGE---IPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSL   89 (207)
Q Consensus        13 ~l~~L~~L~Ls~n~i~~~---~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L   89 (207)
                      .+++|+.|++++|.+++.   .+..+..+++|+.|++++|.+++..|..|..+++|+.|++++|.+++..|..+..+++|
T Consensus       447 ~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L  526 (606)
T 3t6q_A          447 GLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI  526 (606)
T ss_dssp             TCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC
T ss_pred             CCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc
Confidence            355666666666666541   22445666666666666666666666667777777777777777777777777777777


Q ss_pred             ceecCCCCcCcCCCCCC-CCCCCCCcccccCCCCCCCCC
Q 046642           90 EFFDVSDNLLTGPIPRG-KQFDTFGKSSFDGNPGLCGGP  127 (207)
Q Consensus        90 ~~l~l~~N~l~~~~p~~-~~~~~l~~~~~~~n~~~c~~~  127 (207)
                       .|++++|.+++..|.. ..+..+..+++.+||+.|+|+
T Consensus       527 -~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  564 (606)
T 3t6q_A          527 -YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCS  564 (606)
T ss_dssp             -EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred             -EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCC
Confidence             7777777777555542 334566778888888888775

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.50  E-value=2.8e-14  Score=120.63  Aligned_cols=112  Identities=21%  Similarity=0.223  Sum_probs=98.2

Q ss_pred             cccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCccceecCC
Q 046642           16 LITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEFFDVS   95 (207)
Q Consensus        16 ~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l~l~   95 (207)
                      +|+.|++++|.++...+..|..+++|+.|+|++|.+++..+..|..+++|+.|++++|.+++..|..|..+++|+.|+++
T Consensus       225 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  304 (477)
T 2id5_A          225 NLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVS  304 (477)
T ss_dssp             CCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECC
T ss_pred             cccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECC
Confidence            78899999999995555678999999999999999997778889999999999999999998889999999999999999


Q ss_pred             CCcCcCCCCCC-CCCCCCCcccccCCCCCCCCC
Q 046642           96 DNLLTGPIPRG-KQFDTFGKSSFDGNPGLCGGP  127 (207)
Q Consensus        96 ~N~l~~~~p~~-~~~~~l~~~~~~~n~~~c~~~  127 (207)
                      +|.+++..+.. ..+..+..+++.+||+.|+|.
T Consensus       305 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~  337 (477)
T 2id5_A          305 GNQLTTLEESVFHSVGNLETLILDSNPLACDCR  337 (477)
T ss_dssp             SSCCSCCCGGGBSCGGGCCEEECCSSCEECSGG
T ss_pred             CCcCceeCHhHcCCCcccCEEEccCCCccCccc
Confidence            99999654432 456678889999999999874

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.49  E-value=1e-13  Score=112.21  Aligned_cols=110  Identities=21%  Similarity=0.289  Sum_probs=90.6

Q ss_pred             cccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCccceec
Q 046642           14 SNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEFFD   93 (207)
Q Consensus        14 l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l~   93 (207)
                      +++|++|++++|.++ .+|..+..+++|+.|++++|.++ .+|..+..+++|+.|++++|.+.+.+|..+..+++|+.|+
T Consensus       182 l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~  259 (328)
T 4fcg_A          182 LVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLI  259 (328)
T ss_dssp             STTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-CCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEE
T ss_pred             CCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-cCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEE
Confidence            778888999999888 78888888888999999999888 4666788888899999998888888888888888899999


Q ss_pred             CCCCcCcCCCCCC-CCCCCCCcccccCCCCCCC
Q 046642           94 VSDNLLTGPIPRG-KQFDTFGKSSFDGNPGLCG  125 (207)
Q Consensus        94 l~~N~l~~~~p~~-~~~~~l~~~~~~~n~~~c~  125 (207)
                      +++|.+.+.+|.. ..+..+..+++.+|+..-.
T Consensus       260 L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~  292 (328)
T 4fcg_A          260 LKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSR  292 (328)
T ss_dssp             CTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCC
T ss_pred             CCCCCchhhcchhhhcCCCCCEEeCCCCCchhh
Confidence            9888888888854 4566777788888765443

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.49  E-value=3.8e-14  Score=124.69  Aligned_cols=93  Identities=20%  Similarity=0.209  Sum_probs=54.6

Q ss_pred             cCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCccceecCCCCcCcCCCCCCC--CCCCCC
Q 046642           36 ANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEFFDVSDNLLTGPIPRGK--QFDTFG  113 (207)
Q Consensus        36 ~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~--~~~~l~  113 (207)
                      .++++|+.|++++|.++...+..|..+++|+.|++++|.+++..+..|..+++|+.|++++|++++..|...  .+..+.
T Consensus       533 ~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~  612 (680)
T 1ziw_A          533 KGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLT  612 (680)
T ss_dssp             TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCS
T ss_pred             cCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccC
Confidence            344444444444444442222345556666666666666664444445566666666666666664443321  356677


Q ss_pred             cccccCCCCCCCCCC
Q 046642          114 KSSFDGNPGLCGGPL  128 (207)
Q Consensus       114 ~~~~~~n~~~c~~~~  128 (207)
                      .+++.+||+.|+|+.
T Consensus       613 ~l~l~~N~~~c~c~~  627 (680)
T 1ziw_A          613 ELDMRFNPFDCTCES  627 (680)
T ss_dssp             EEECTTCCCCBCCCC
T ss_pred             EEEccCCCcccCCcc
Confidence            888999999999874

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.48  E-value=1.7e-13  Score=116.94  Aligned_cols=112  Identities=27%  Similarity=0.361  Sum_probs=78.9

Q ss_pred             hhcccccEEEccCCCCCCCCchh-ccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCccc
Q 046642           12 KLSNLITAIILSNNSFVGEIPTS-IANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLE   90 (207)
Q Consensus        12 ~~l~~L~~L~Ls~n~i~~~~p~~-~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~   90 (207)
                      ..+++|++|++++|.+++.+|.. +..+++|+.|++++|.+++..|..+.  ++|+.|++++|.++ .+|..+..+++|+
T Consensus       371 ~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~  447 (520)
T 2z7x_B          371 TQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQ  447 (520)
T ss_dssp             TTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCC
T ss_pred             hhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCC
Confidence            34566666666666666534443 56666677777777766655555443  67888888888888 6777777888888


Q ss_pred             eecCCCCcCcCCCCC--CCCCCCCCcccccCCCCCCCCC
Q 046642           91 FFDVSDNLLTGPIPR--GKQFDTFGKSSFDGNPGLCGGP  127 (207)
Q Consensus        91 ~l~l~~N~l~~~~p~--~~~~~~l~~~~~~~n~~~c~~~  127 (207)
                      .|++++|+++ .+|.  ...+..+..+++.+|++.|+|+
T Consensus       448 ~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~  485 (520)
T 2z7x_B          448 ELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP  485 (520)
T ss_dssp             EEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             EEECCCCcCC-ccCHHHhccCCcccEEECcCCCCcccCC
Confidence            8888888888 4554  3456677788888888888764

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.48  E-value=1.1e-13  Score=109.07  Aligned_cols=89  Identities=21%  Similarity=0.150  Sum_probs=48.9

Q ss_pred             hcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCcccee
Q 046642           13 LSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEFF   92 (207)
Q Consensus        13 ~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l   92 (207)
                      +++++++|++++|.+++..+..|.++++|+.|++++|.+++..+..|..+++|+.|++++|.+++..+..+..+++|+.|
T Consensus        26 l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  105 (276)
T 2z62_A           26 LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL  105 (276)
T ss_dssp             SCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEE
T ss_pred             CCCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEE
Confidence            34455566666666554444455555556666666555554444455555555555555555554444455555555555


Q ss_pred             cCCCCcCcC
Q 046642           93 DVSDNLLTG  101 (207)
Q Consensus        93 ~l~~N~l~~  101 (207)
                      ++++|.+++
T Consensus       106 ~l~~n~l~~  114 (276)
T 2z62_A          106 VAVETNLAS  114 (276)
T ss_dssp             ECTTSCCCC
T ss_pred             ECCCCCccc
Confidence            555555553

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.48  E-value=8.1e-14  Score=104.68  Aligned_cols=106  Identities=20%  Similarity=0.249  Sum_probs=72.7

Q ss_pred             hhcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCccce
Q 046642           12 KLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEF   91 (207)
Q Consensus        12 ~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~   91 (207)
                      .-+++|+.|++++|.++ .+| .+..+++|+.|++++|.++  .+..+..+++|+.|++++|.+++..|..+..+++|+.
T Consensus        41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~  116 (197)
T 4ezg_A           41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL  116 (197)
T ss_dssp             HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred             hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence            44567777777777777 455 5677777777777777665  2346777777777777777777656667777777777


Q ss_pred             ecCCCCcCcCCCCC-CCCCCCCCcccccCCC
Q 046642           92 FDVSDNLLTGPIPR-GKQFDTFGKSSFDGNP  121 (207)
Q Consensus        92 l~l~~N~l~~~~p~-~~~~~~l~~~~~~~n~  121 (207)
                      |++++|.+++..|. ...+..+..+++.+|.
T Consensus       117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~  147 (197)
T 4ezg_A          117 LDISHSAHDDSILTKINTLPKVNSIDLSYNG  147 (197)
T ss_dssp             EECCSSBCBGGGHHHHTTCSSCCEEECCSCT
T ss_pred             EEecCCccCcHhHHHHhhCCCCCEEEccCCC
Confidence            77777777754332 2345566666776665

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.48  E-value=2e-13  Score=108.06  Aligned_cols=108  Identities=21%  Similarity=0.273  Sum_probs=58.1

Q ss_pred             hcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCc-CCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCccce
Q 046642           13 LSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNN-LQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEF   91 (207)
Q Consensus        13 ~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~-l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~   91 (207)
                      .+++|++|++++|.+++..|..|..+++|+.|++++|. +....|..+..+++|+.|++++|.+++..|..+..+++|++
T Consensus        54 ~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  133 (285)
T 1ozn_A           54 ACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQY  133 (285)
T ss_dssp             TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred             cCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCE
Confidence            34455555555555554445555555555555555554 44333555555555566666665555554555555566666


Q ss_pred             ecCCCCcCcCCCCC-CCCCCCCCcccccCC
Q 046642           92 FDVSDNLLTGPIPR-GKQFDTFGKSSFDGN  120 (207)
Q Consensus        92 l~l~~N~l~~~~p~-~~~~~~l~~~~~~~n  120 (207)
                      |++++|.+++..+. ...+..+..+++.+|
T Consensus       134 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n  163 (285)
T 1ozn_A          134 LYLQDNALQALPDDTFRDLGNLTHLFLHGN  163 (285)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             EECCCCcccccCHhHhccCCCccEEECCCC
Confidence            66666655543332 123445555555555

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.48  E-value=1.2e-13  Score=119.11  Aligned_cols=110  Identities=24%  Similarity=0.349  Sum_probs=71.5

Q ss_pred             cccccEEEccCCCCCCCCch-hccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCcccee
Q 046642           14 SNLITAIILSNNSFVGEIPT-SIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEFF   92 (207)
Q Consensus        14 l~~L~~L~Ls~n~i~~~~p~-~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l   92 (207)
                      +++|+.|++++|.+++.+|. .+..+++|+.|++++|.+++..|..+.  ++|+.|++++|.++ .+|..+..+++|+.|
T Consensus       402 l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L  478 (562)
T 3a79_B          402 MSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQEL  478 (562)
T ss_dssp             CTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEE
T ss_pred             CCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEE
Confidence            44555555555555542332 244455555555555555444443332  57788888888887 677766788889999


Q ss_pred             cCCCCcCcCCCCC--CCCCCCCCcccccCCCCCCCCC
Q 046642           93 DVSDNLLTGPIPR--GKQFDTFGKSSFDGNPGLCGGP  127 (207)
Q Consensus        93 ~l~~N~l~~~~p~--~~~~~~l~~~~~~~n~~~c~~~  127 (207)
                      ++++|+++ .+|.  ...+..+..+++.+||+.|+|+
T Consensus       479 ~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~  514 (562)
T 3a79_B          479 NVASNQLK-SVPDGVFDRLTSLQYIWLHDNPWDCTCP  514 (562)
T ss_dssp             ECCSSCCC-CCCTTSTTTCTTCCCEECCSCCBCCCHH
T ss_pred             ECCCCCCC-CCCHHHHhcCCCCCEEEecCCCcCCCcc
Confidence            99999888 4554  3456677888889999988774

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.47  E-value=1.5e-13  Score=112.04  Aligned_cols=110  Identities=22%  Similarity=0.232  Sum_probs=92.2

Q ss_pred             hhhcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCccc
Q 046642           11 EKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLE   90 (207)
Q Consensus        11 ~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~   90 (207)
                      ..+.++|++|++++|.+++..+..|..+++|+.|++++|.+++..|..|..+++|++|++++|.+++..+..+..+++|+
T Consensus        48 ~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  127 (353)
T 2z80_A           48 SGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLT  127 (353)
T ss_dssp             TTCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCS
T ss_pred             ccccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCC
Confidence            34667899999999999976666899999999999999999977788899999999999999999965555689999999


Q ss_pred             eecCCCCcCcCCCCC---CCCCCCCCcccccCCC
Q 046642           91 FFDVSDNLLTGPIPR---GKQFDTFGKSSFDGNP  121 (207)
Q Consensus        91 ~l~l~~N~l~~~~p~---~~~~~~l~~~~~~~n~  121 (207)
                      +|++++|.+++ +|.   ...+..++.+++.+|.
T Consensus       128 ~L~L~~n~l~~-l~~~~~~~~l~~L~~L~l~~n~  160 (353)
T 2z80_A          128 FLNLLGNPYKT-LGETSLFSHLTKLQILRVGNMD  160 (353)
T ss_dssp             EEECTTCCCSS-SCSSCSCTTCTTCCEEEEEESS
T ss_pred             EEECCCCCCcc-cCchhhhccCCCCcEEECCCCc
Confidence            99999999984 444   3456777778887774

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.47  E-value=1.2e-13  Score=118.48  Aligned_cols=110  Identities=17%  Similarity=0.153  Sum_probs=94.8

Q ss_pred             hhcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCccce
Q 046642           12 KLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEF   91 (207)
Q Consensus        12 ~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~   91 (207)
                      .++++|++|++++|.+++..|..|.++++|++|++++|.+++..|..|..+++|++|++++|.+++..|..++.+++|++
T Consensus        23 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  102 (549)
T 2z81_A           23 GLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKY  102 (549)
T ss_dssp             CCCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCE
T ss_pred             cCCCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcE
Confidence            45678999999999999888889999999999999999999888889999999999999999999887778999999999


Q ss_pred             ecCCCCcCcCC-CC-CCCCCCCCCcccccCCC
Q 046642           92 FDVSDNLLTGP-IP-RGKQFDTFGKSSFDGNP  121 (207)
Q Consensus        92 l~l~~N~l~~~-~p-~~~~~~~l~~~~~~~n~  121 (207)
                      |++++|.+++. .| ....+..++.+++.+|.
T Consensus       103 L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~  134 (549)
T 2z81_A          103 LNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVE  134 (549)
T ss_dssp             EECTTCCCSSSCSSCSCTTCTTCCEEEEEESS
T ss_pred             EECCCCcccccchhhhhhccCCccEEECCCCc
Confidence            99999999852 33 34556677777777775

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.47  E-value=2.2e-13  Score=116.87  Aligned_cols=113  Identities=22%  Similarity=0.285  Sum_probs=73.0

Q ss_pred             hhhcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccC------------------CCCCCCCEEecCC
Q 046642           11 EKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSL------------------SNLTAIESMDLSS   72 (207)
Q Consensus        11 ~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~------------------~~l~~L~~L~ls~   72 (207)
                      ...+++|++|++++|.++ .+|..+..+++|+.|++++|.++ .+|..+                  ..+++|+.|++++
T Consensus       383 ~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~-~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~  460 (549)
T 2z81_A          383 LLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISR  460 (549)
T ss_dssp             GGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCS-CCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCS
T ss_pred             hhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCcc-cccchhcCCceEEECCCCChhhhcccCChhcEEECCC
Confidence            345667777777777776 56666666666777777766665 233221                  2466677777777


Q ss_pred             CCCCCCCchhhhcCCccceecCCCCcCcCCCCC-CCCCCCCCcccccCCCCCCCCC
Q 046642           73 NMLSGNIPQQLSELTSLEFFDVSDNLLTGPIPR-GKQFDTFGKSSFDGNPGLCGGP  127 (207)
Q Consensus        73 N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~-~~~~~~l~~~~~~~n~~~c~~~  127 (207)
                      |.++ .+|. ...+++|+.|++++|++++..|. ...+..+..+++.+|++.|+|+
T Consensus       461 N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  514 (549)
T 2z81_A          461 NKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  514 (549)
T ss_dssp             SCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred             CccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence            7776 5554 35567777777777777765554 2455666777777787777765

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.47  E-value=1.6e-13  Score=119.13  Aligned_cols=110  Identities=24%  Similarity=0.156  Sum_probs=71.4

Q ss_pred             hhcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCccce
Q 046642           12 KLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEF   91 (207)
Q Consensus        12 ~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~   91 (207)
                      .+++++++|++++|.+++..+..|.++++|++|++++|.+++..|..|.++++|++|++++|.+++..|+.|..+++|++
T Consensus        29 ~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~  108 (606)
T 3vq2_A           29 DIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLEN  108 (606)
T ss_dssp             TSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCE
T ss_pred             CCCCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCE
Confidence            45566777777777777666666777777777777777776555666777777777777777777666666777777777


Q ss_pred             ecCCCCcCcCCCCC-CCCCCCCCcccccCCC
Q 046642           92 FDVSDNLLTGPIPR-GKQFDTFGKSSFDGNP  121 (207)
Q Consensus        92 l~l~~N~l~~~~p~-~~~~~~l~~~~~~~n~  121 (207)
                      |++++|.+++..|. ...+..++.+++.+|.
T Consensus       109 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~  139 (606)
T 3vq2_A          109 LVAVETKLASLESFPIGQLITLKKLNVAHNF  139 (606)
T ss_dssp             EECTTSCCCCSSSSCCTTCTTCCEEECCSSC
T ss_pred             EEccCCccccccccccCCCCCCCEEeCCCCc
Confidence            77777766644322 2344455555555554

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.47  E-value=6.3e-14  Score=121.97  Aligned_cols=115  Identities=18%  Similarity=0.199  Sum_probs=99.7

Q ss_pred             hhhhhhcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCC
Q 046642            8 LEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELT   87 (207)
Q Consensus         8 ~~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~   87 (207)
                      ......+++|+.|+|++|.+++..|..|..+++|+.|+|++|.+++ +|..+..+++|+.|++++|.++ .+|..+..++
T Consensus       247 ~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~  324 (597)
T 3oja_B          247 TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFD  324 (597)
T ss_dssp             CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHT
T ss_pred             ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCC
Confidence            3445678899999999999998889999999999999999999984 6777888999999999999999 6888889999


Q ss_pred             ccceecCCCCcCcCCCCCCCCCCCCCcccccCCCCCCCC
Q 046642           88 SLEFFDVSDNLLTGPIPRGKQFDTFGKSSFDGNPGLCGG  126 (207)
Q Consensus        88 ~L~~l~l~~N~l~~~~p~~~~~~~l~~~~~~~n~~~c~~  126 (207)
                      +|+.|++++|.+++. | ...+..+..+++.+|++.|.|
T Consensus       325 ~L~~L~L~~N~l~~~-~-~~~~~~L~~L~l~~N~~~~~~  361 (597)
T 3oja_B          325 RLENLYLDHNSIVTL-K-LSTHHTLKNLTLSHNDWDCNS  361 (597)
T ss_dssp             TCSEEECCSSCCCCC-C-CCTTCCCSEEECCSSCEEHHH
T ss_pred             CCCEEECCCCCCCCc-C-hhhcCCCCEEEeeCCCCCChh
Confidence            999999999999854 3 345678888999999998865

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.46  E-value=1.5e-13  Score=115.73  Aligned_cols=93  Identities=15%  Similarity=0.147  Sum_probs=77.2

Q ss_pred             hhhcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCccc
Q 046642           11 EKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLE   90 (207)
Q Consensus        11 ~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~   90 (207)
                      ..++++++.|+|++|.|++..|..|.++++|+.|+|++|.+++..|..|..+++|+.|++++|.+++..+..|..+++|+
T Consensus        71 ~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  150 (452)
T 3zyi_A           71 QGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLR  150 (452)
T ss_dssp             SCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCC
T ss_pred             CCCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCC
Confidence            34667888899999998877788888888999999999988877778888888899999998888866666788888888


Q ss_pred             eecCCCCcCcCCC
Q 046642           91 FFDVSDNLLTGPI  103 (207)
Q Consensus        91 ~l~l~~N~l~~~~  103 (207)
                      +|++++|.++...
T Consensus       151 ~L~L~~N~l~~~~  163 (452)
T 3zyi_A          151 ELWLRNNPIESIP  163 (452)
T ss_dssp             EEECCSCCCCEEC
T ss_pred             EEECCCCCcceeC
Confidence            8888888887433

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.46  E-value=6.1e-14  Score=100.59  Aligned_cols=91  Identities=18%  Similarity=0.243  Sum_probs=80.9

Q ss_pred             hhcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCC-CchhhhcCCccc
Q 046642           12 KLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGN-IPQQLSELTSLE   90 (207)
Q Consensus        12 ~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~-~p~~~~~l~~L~   90 (207)
                      ..+++|+.|++++|.+++.  ..+..+++|+.|++++|.+++.+|..+..+++|+.|++++|.+++. .+..+..+++|+
T Consensus        39 ~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~  116 (149)
T 2je0_A           39 DEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLK  116 (149)
T ss_dssp             TTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCC
T ss_pred             hhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCC
Confidence            4578999999999999965  7789999999999999999977888888899999999999999953 347899999999


Q ss_pred             eecCCCCcCcCCCC
Q 046642           91 FFDVSDNLLTGPIP  104 (207)
Q Consensus        91 ~l~l~~N~l~~~~p  104 (207)
                      .|++++|.+++..+
T Consensus       117 ~L~l~~N~l~~~~~  130 (149)
T 2je0_A          117 SLDLFNCEVTNLND  130 (149)
T ss_dssp             EEECTTCGGGGSTT
T ss_pred             EEeCcCCcccchHH
Confidence            99999999996544

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.46  E-value=2.9e-13  Score=117.24  Aligned_cols=102  Identities=21%  Similarity=0.276  Sum_probs=86.8

Q ss_pred             cccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCccceecCC
Q 046642           16 LITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEFFDVS   95 (207)
Q Consensus        16 ~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l~l~   95 (207)
                      .|+.|+|++|.|++ +|. |+.+++|+.|+|++|.++ .+|..++.+++|+.|++++|.+++ +| .+..+++|+.|+++
T Consensus       442 ~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls  516 (567)
T 1dce_A          442 DVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLC  516 (567)
T ss_dssp             TCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECC
T ss_pred             CceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECC
Confidence            58899999999985 676 889999999999999998 788899999999999999999995 67 78899999999999


Q ss_pred             CCcCcCCC-CC-CCCCCCCCcccccCCCC
Q 046642           96 DNLLTGPI-PR-GKQFDTFGKSSFDGNPG  122 (207)
Q Consensus        96 ~N~l~~~~-p~-~~~~~~l~~~~~~~n~~  122 (207)
                      +|.+++.. |. ...+..+..+++.+|+.
T Consensus       517 ~N~l~~~~~p~~l~~l~~L~~L~L~~N~l  545 (567)
T 1dce_A          517 NNRLQQSAAIQPLVSCPRLVLLNLQGNSL  545 (567)
T ss_dssp             SSCCCSSSTTGGGGGCTTCCEEECTTSGG
T ss_pred             CCCCCCCCCcHHHhcCCCCCEEEecCCcC
Confidence            99998774 54 35567788888888864

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.45  E-value=4.1e-13  Score=116.83  Aligned_cols=111  Identities=14%  Similarity=0.061  Sum_probs=86.7

Q ss_pred             hhhcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCccc
Q 046642           11 EKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLE   90 (207)
Q Consensus        11 ~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~   90 (207)
                      +..+++|++|+|++|.|++..|..|..+++|+.|+|++|.+++..|..|+.+++|+.|++++|.+++..+..|..+++|+
T Consensus        71 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~  150 (597)
T 3oja_B           71 LDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLT  150 (597)
T ss_dssp             HHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             HccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCC
Confidence            45567888888888888877777888888888888888888877777788888888888888888855555568888888


Q ss_pred             eecCCCCcCcCCCCC-CCCCCCCCcccccCCC
Q 046642           91 FFDVSDNLLTGPIPR-GKQFDTFGKSSFDGNP  121 (207)
Q Consensus        91 ~l~l~~N~l~~~~p~-~~~~~~l~~~~~~~n~  121 (207)
                      +|++++|.+++..|. ...+..+..+++.+|.
T Consensus       151 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~  182 (597)
T 3oja_B          151 TLSMSNNNLERIEDDTFQATTSLQNLQLSSNR  182 (597)
T ss_dssp             EEECCSSCCCBCCTTTTTTCTTCCEEECTTSC
T ss_pred             EEEeeCCcCCCCChhhhhcCCcCcEEECcCCC
Confidence            888888888876664 3445666667776664

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.45  E-value=5.4e-13  Score=110.06  Aligned_cols=112  Identities=13%  Similarity=0.061  Sum_probs=86.9

Q ss_pred             hhhhcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCcc
Q 046642           10 YEKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSL   89 (207)
Q Consensus        10 ~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L   89 (207)
                      ++..+++|++|++++|.+++..+..|..+++|++|++++|.+++..|..+..+++|+.|++++|.++...+..+..+++|
T Consensus        64 ~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L  143 (390)
T 3o6n_A           64 LLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKL  143 (390)
T ss_dssp             HHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             HhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCC
Confidence            34567888888998888887667788888888999998888887777778888888888888888884444456888888


Q ss_pred             ceecCCCCcCcCCCCC-CCCCCCCCcccccCCC
Q 046642           90 EFFDVSDNLLTGPIPR-GKQFDTFGKSSFDGNP  121 (207)
Q Consensus        90 ~~l~l~~N~l~~~~p~-~~~~~~l~~~~~~~n~  121 (207)
                      ++|++++|.+++..|. ...+..+..+++.+|.
T Consensus       144 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~  176 (390)
T 3o6n_A          144 TTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR  176 (390)
T ss_dssp             CEEECCSSCCCBCCTTTTSSCTTCCEEECCSSC
T ss_pred             cEEECCCCccCccChhhccCCCCCCEEECCCCc
Confidence            8888888888866554 2445667777777664

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.45  E-value=2.7e-13  Score=109.41  Aligned_cols=108  Identities=19%  Similarity=0.217  Sum_probs=74.7

Q ss_pred             hhhcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCccc
Q 046642           11 EKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLE   90 (207)
Q Consensus        11 ~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~   90 (207)
                      ...+++|+.|++++|.++ .+|..+.  ++|+.|++++|.+++..|..+..+++|+.|++++|.+++..+..+..+++|+
T Consensus       167 ~~~l~~L~~L~l~~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  243 (330)
T 1xku_A          167 FQGMKKLSYIRIADTNIT-TIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLR  243 (330)
T ss_dssp             GGGCTTCCEEECCSSCCC-SCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCC
T ss_pred             ccCCCCcCEEECCCCccc-cCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCC
Confidence            345677778888888777 4555443  6777777777777766667777777777777777777766666677777777


Q ss_pred             eecCCCCcCcCCCCC-CCCCCCCCcccccCCCC
Q 046642           91 FFDVSDNLLTGPIPR-GKQFDTFGKSSFDGNPG  122 (207)
Q Consensus        91 ~l~l~~N~l~~~~p~-~~~~~~l~~~~~~~n~~  122 (207)
                      .|++++|.++ .+|. ...+..+..+++.+|+.
T Consensus       244 ~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i  275 (330)
T 1xku_A          244 ELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNI  275 (330)
T ss_dssp             EEECCSSCCS-SCCTTTTTCSSCCEEECCSSCC
T ss_pred             EEECCCCcCc-cCChhhccCCCcCEEECCCCcC
Confidence            7777777777 4443 34455666677776653

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.45  E-value=4e-13  Score=117.78  Aligned_cols=105  Identities=19%  Similarity=0.286  Sum_probs=59.8

Q ss_pred             cccEEEccCCCCCCCCchhcc--CCCCCCEEECcCCcCCCCCcccCCCCCCCCEEec------CCCCCCCCCchhhhcCC
Q 046642           16 LITAIILSNNSFVGEIPTSIA--NLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDL------SSNMLSGNIPQQLSELT   87 (207)
Q Consensus        16 ~L~~L~Ls~n~i~~~~p~~~~--~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l------s~N~l~~~~p~~~~~l~   87 (207)
                      +|+.|+|++|.++ .+|..+.  .+++|+.|++++|.+++ +|..+..+++|+.|++      ++|.+.+.+|..+..++
T Consensus       489 ~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~  566 (636)
T 4eco_A          489 LLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCP  566 (636)
T ss_dssp             GCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCS
T ss_pred             CccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCC
Confidence            5555666666655 4555554  55666666666666654 5555556666666666      34555555666666666


Q ss_pred             ccceecCCCCcCcCCCCCCCCCCCCCcccccCCCCCC
Q 046642           88 SLEFFDVSDNLLTGPIPRGKQFDTFGKSSFDGNPGLC  124 (207)
Q Consensus        88 ~L~~l~l~~N~l~~~~p~~~~~~~l~~~~~~~n~~~c  124 (207)
                      +|+.|++++|.+ +.+|.... +.+..+++++|+..|
T Consensus       567 ~L~~L~Ls~N~l-~~ip~~~~-~~L~~L~Ls~N~l~~  601 (636)
T 4eco_A          567 SLTQLQIGSNDI-RKVNEKIT-PNISVLDIKDNPNIS  601 (636)
T ss_dssp             SCCEEECCSSCC-CBCCSCCC-TTCCEEECCSCTTCE
T ss_pred             CCCEEECCCCcC-CccCHhHh-CcCCEEECcCCCCcc
Confidence            666666666666 34554422 455555666665554

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.45  E-value=1.6e-13  Score=119.12  Aligned_cols=111  Identities=16%  Similarity=0.056  Sum_probs=76.1

Q ss_pred             hhhcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCccc
Q 046642           11 EKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLE   90 (207)
Q Consensus        11 ~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~   90 (207)
                      ..++..+++|++++|.|++..|..|.++++|++|++++|.+.+..|..|..+++|++|++++|.+++..|..+..+++|+
T Consensus        29 ~~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  108 (606)
T 3t6q_A           29 GTLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALK  108 (606)
T ss_dssp             TTSCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCC
T ss_pred             CCCCCcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhccccccc
Confidence            34566777777777777766677777777777777777777766677777777777777777777766677777777777


Q ss_pred             eecCCCCcCcCCCCC-CCCCCCCCcccccCCC
Q 046642           91 FFDVSDNLLTGPIPR-GKQFDTFGKSSFDGNP  121 (207)
Q Consensus        91 ~l~l~~N~l~~~~p~-~~~~~~l~~~~~~~n~  121 (207)
                      +|++++|.+++..|. ...+..++.+++.+|.
T Consensus       109 ~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~  140 (606)
T 3t6q_A          109 HLFFIQTGISSIDFIPLHNQKTLESLYLGSNH  140 (606)
T ss_dssp             EEECTTSCCSCGGGSCCTTCTTCCEEECCSSC
T ss_pred             EeeccccCcccCCcchhccCCcccEEECCCCc
Confidence            777777777653222 2334455555555554

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.45  E-value=2.3e-13  Score=115.09  Aligned_cols=91  Identities=21%  Similarity=0.232  Sum_probs=51.8

Q ss_pred             hcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCcccee
Q 046642           13 LSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEFF   92 (207)
Q Consensus        13 ~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l   92 (207)
                      ++++++.|+|++|.|++..|..|.++++|+.|+|++|.+++..|..|.++++|+.|++++|.++...+..|..+++|+.|
T Consensus        30 ~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  109 (477)
T 2id5_A           30 IPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKL  109 (477)
T ss_dssp             CCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEE
T ss_pred             CCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEE
Confidence            44556666666666665555555666666666666666655555555566666666666666554333445555555555


Q ss_pred             cCCCCcCcCCC
Q 046642           93 DVSDNLLTGPI  103 (207)
Q Consensus        93 ~l~~N~l~~~~  103 (207)
                      ++++|.+++..
T Consensus       110 ~Ls~n~i~~~~  120 (477)
T 2id5_A          110 DISENKIVILL  120 (477)
T ss_dssp             ECTTSCCCEEC
T ss_pred             ECCCCccccCC
Confidence            55555555433

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.45  E-value=7.7e-14  Score=102.97  Aligned_cols=107  Identities=14%  Similarity=0.076  Sum_probs=78.9

Q ss_pred             hcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCcccee
Q 046642           13 LSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEFF   92 (207)
Q Consensus        13 ~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l   92 (207)
                      -+.+|+.|++++|.++ .+|......++|+.|++++|.+++.  ..+..+++|+.|++++|.+++..+..+..+++|+.|
T Consensus        17 ~~~~L~~L~l~~n~l~-~i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L   93 (176)
T 1a9n_A           17 NAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL   93 (176)
T ss_dssp             CTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred             CcCCceEEEeeCCCCc-hhHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEE
Confidence            3567888889888888 4554333334888899988888854  578888888889999888885544556888888888


Q ss_pred             cCCCCcCcCCCCC---CCCCCCCCcccccCCCCC
Q 046642           93 DVSDNLLTGPIPR---GKQFDTFGKSSFDGNPGL  123 (207)
Q Consensus        93 ~l~~N~l~~~~p~---~~~~~~l~~~~~~~n~~~  123 (207)
                      ++++|.++ .+|.   ...+..+..+++.+|+..
T Consensus        94 ~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~  126 (176)
T 1a9n_A           94 ILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT  126 (176)
T ss_dssp             ECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG
T ss_pred             ECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC
Confidence            88888886 3443   345566777788888753

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.44  E-value=2.5e-13  Score=120.79  Aligned_cols=109  Identities=28%  Similarity=0.400  Sum_probs=91.5

Q ss_pred             hhhcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCccc
Q 046642           11 EKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLE   90 (207)
Q Consensus        11 ~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~   90 (207)
                      +..+..|+.|+|++|.+. .+|..+..+++|+.|+|++|.++ .+|..|..+++|+.|+|++|.|+ .+|..+..+++|+
T Consensus       220 ~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~  296 (727)
T 4b8c_D          220 KYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLK  296 (727)
T ss_dssp             --CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCS
T ss_pred             hccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCC
Confidence            345678999999999998 77777778999999999999998 88888999999999999999999 7788899999999


Q ss_pred             eecCCCCcCcCCCCC-CCCCCCCCcccccCCCCC
Q 046642           91 FFDVSDNLLTGPIPR-GKQFDTFGKSSFDGNPGL  123 (207)
Q Consensus        91 ~l~l~~N~l~~~~p~-~~~~~~l~~~~~~~n~~~  123 (207)
                      +|+|++|.++ .+|. ...+..+..+++.+|+..
T Consensus       297 ~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~  329 (727)
T 4b8c_D          297 YFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLE  329 (727)
T ss_dssp             EEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCC
T ss_pred             EEECCCCCCC-ccChhhhcCCCccEEeCCCCccC
Confidence            9999999997 5565 355677788888888754

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.44  E-value=1.3e-13  Score=117.39  Aligned_cols=112  Identities=17%  Similarity=0.160  Sum_probs=89.1

Q ss_pred             hhcccccEEEccCCCCCCCCchhcc-CCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCccc
Q 046642           12 KLSNLITAIILSNNSFVGEIPTSIA-NLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLE   90 (207)
Q Consensus        12 ~~l~~L~~L~Ls~n~i~~~~p~~~~-~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~   90 (207)
                      ..+++|+.|+|++|.+++..|..+. .+++|+.|+|++|.+++. | ....+++|+.|++++|.+++ +|..+..+++|+
T Consensus       141 ~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~  217 (487)
T 3oja_A          141 GCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVT  217 (487)
T ss_dssp             GGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCS
T ss_pred             cCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-c-ccccCCCCCEEECCCCCCCC-CCHhHcCCCCcc
Confidence            4567888888888888877777775 688888888888888754 3 24468899999999999995 445588999999


Q ss_pred             eecCCCCcCcCCCCCCCCCCCCCcccccCCCCCCCC
Q 046642           91 FFDVSDNLLTGPIPRGKQFDTFGKSSFDGNPGLCGG  126 (207)
Q Consensus        91 ~l~l~~N~l~~~~p~~~~~~~l~~~~~~~n~~~c~~  126 (207)
                      .|++++|.+++..+....+..+..+++.+|+..|++
T Consensus       218 ~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~c~~  253 (487)
T 3oja_A          218 WISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGT  253 (487)
T ss_dssp             EEECTTSCCCEECTTCCCCTTCCEEECTTCCBCHHH
T ss_pred             EEEecCCcCcccchhhccCCCCCEEEcCCCCCcCcc
Confidence            999999999964444455677888999999999765

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.43  E-value=3.2e-13  Score=113.33  Aligned_cols=109  Identities=18%  Similarity=0.213  Sum_probs=98.8

Q ss_pred             ccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCccceecC
Q 046642           15 NLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEFFDV   94 (207)
Q Consensus        15 ~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l~l   94 (207)
                      ++|+.|++++|.+++..|..|..+++|+.|++++|.+++..|..|..+++|+.|++++|.+++..|..+..+++|+.|++
T Consensus       275 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  354 (455)
T 3v47_A          275 SGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDL  354 (455)
T ss_dssp             SCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEEC
T ss_pred             cCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEEC
Confidence            68999999999999889999999999999999999999888889999999999999999999888889999999999999


Q ss_pred             CCCcCcCCCCCC-CCCCCCCcccccCCCCC
Q 046642           95 SDNLLTGPIPRG-KQFDTFGKSSFDGNPGL  123 (207)
Q Consensus        95 ~~N~l~~~~p~~-~~~~~l~~~~~~~n~~~  123 (207)
                      ++|.+++..|.. ..+..+..+++.+|...
T Consensus       355 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  384 (455)
T 3v47_A          355 SYNHIRALGDQSFLGLPNLKELALDTNQLK  384 (455)
T ss_dssp             CSSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred             CCCcccccChhhccccccccEEECCCCccc
Confidence            999999876753 45678888889888643

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.43  E-value=3.3e-13  Score=109.03  Aligned_cols=108  Identities=21%  Similarity=0.207  Sum_probs=69.1

Q ss_pred             ccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCccceecC
Q 046642           15 NLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEFFDV   94 (207)
Q Consensus        15 ~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l~l   94 (207)
                      ++|+.|++++|.+++..+..|..+++|+.|++++|.+++..+..+..+++|+.|++++|.++ .+|..+..+++|+.|++
T Consensus       193 ~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l  271 (332)
T 2ft3_A          193 ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYL  271 (332)
T ss_dssp             SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEEC
T ss_pred             CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEEC
Confidence            56666777777776666666677777777777777776555556667777777777777777 56666677777777777


Q ss_pred             CCCcCcCCCCCCC-------CCCCCCcccccCCCCC
Q 046642           95 SDNLLTGPIPRGK-------QFDTFGKSSFDGNPGL  123 (207)
Q Consensus        95 ~~N~l~~~~p~~~-------~~~~l~~~~~~~n~~~  123 (207)
                      ++|++++..+...       ....+..+++.+||..
T Consensus       272 ~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~  307 (332)
T 2ft3_A          272 HTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVP  307 (332)
T ss_dssp             CSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSC
T ss_pred             CCCCCCccChhHccccccccccccccceEeecCccc
Confidence            7777764332211       0233455566666654

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.43  E-value=4.2e-13  Score=112.54  Aligned_cols=92  Identities=18%  Similarity=0.169  Sum_probs=68.8

Q ss_pred             hhhcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCccc
Q 046642           11 EKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLE   90 (207)
Q Consensus        11 ~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~   90 (207)
                      ..++++++.|+|++|.|++..+..|.++++|+.|+|++|.+++..+..|..+++|+.|++++|.++...+..|..+++|+
T Consensus        60 ~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  139 (440)
T 3zyj_A           60 DGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLK  139 (440)
T ss_dssp             SCCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCC
T ss_pred             CCCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCc
Confidence            34556777888888888766667777788888888888887766667777788888888888887755555677777788


Q ss_pred             eecCCCCcCcCC
Q 046642           91 FFDVSDNLLTGP  102 (207)
Q Consensus        91 ~l~l~~N~l~~~  102 (207)
                      .|++++|.++..
T Consensus       140 ~L~L~~N~i~~~  151 (440)
T 3zyj_A          140 ELWLRNNPIESI  151 (440)
T ss_dssp             EEECCSCCCCEE
T ss_pred             eeeCCCCccccc
Confidence            888887777643

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.43  E-value=2e-13  Score=109.07  Aligned_cols=108  Identities=17%  Similarity=0.282  Sum_probs=58.2

Q ss_pred             cccccEEEccCCCCCCCCc-hhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCC-CCchhhhcCCccce
Q 046642           14 SNLITAIILSNNSFVGEIP-TSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSG-NIPQQLSELTSLEF   91 (207)
Q Consensus        14 l~~L~~L~Ls~n~i~~~~p-~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~-~~p~~~~~l~~L~~   91 (207)
                      +++|++|++++|.+++..+ ..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+++ ..|..+..+++|+.
T Consensus       100 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~  179 (306)
T 2z66_A          100 LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTF  179 (306)
T ss_dssp             CTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCE
T ss_pred             CCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCE
Confidence            4555566666665553332 345555566666666665555555555555666666666665553 34555555556666


Q ss_pred             ecCCCCcCcCCCCCC-CCCCCCCcccccCCC
Q 046642           92 FDVSDNLLTGPIPRG-KQFDTFGKSSFDGNP  121 (207)
Q Consensus        92 l~l~~N~l~~~~p~~-~~~~~l~~~~~~~n~  121 (207)
                      |++++|.+++..|.. ..+..+..+++.+|.
T Consensus       180 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~  210 (306)
T 2z66_A          180 LDLSQCQLEQLSPTAFNSLSSLQVLNMSHNN  210 (306)
T ss_dssp             EECTTSCCCEECTTTTTTCTTCCEEECTTSC
T ss_pred             EECCCCCcCCcCHHHhcCCCCCCEEECCCCc
Confidence            666666555443332 233445555555543

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.42  E-value=3.8e-13  Score=109.30  Aligned_cols=89  Identities=20%  Similarity=0.205  Sum_probs=79.3

Q ss_pred             cccccEEEccC-CCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCcccee
Q 046642           14 SNLITAIILSN-NSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEFF   92 (207)
Q Consensus        14 l~~L~~L~Ls~-n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l   92 (207)
                      +++|+.|+|++ |.|++..+..|.+|++|+.|+|++|++++..|..|..+++|+.|+|++|.|++..+..+..+. |+.|
T Consensus        30 ~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l  108 (347)
T 2ifg_A           30 AENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQEL  108 (347)
T ss_dssp             CSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEE
T ss_pred             CCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEE
Confidence            45699999996 999988888999999999999999999988889999999999999999999976666666665 9999


Q ss_pred             cCCCCcCcCCC
Q 046642           93 DVSDNLLTGPI  103 (207)
Q Consensus        93 ~l~~N~l~~~~  103 (207)
                      ++.+|.+.+..
T Consensus       109 ~l~~N~~~c~c  119 (347)
T 2ifg_A          109 VLSGNPLHCSC  119 (347)
T ss_dssp             ECCSSCCCCCG
T ss_pred             EeeCCCccCCC
Confidence            99999998644

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.42  E-value=4.1e-13  Score=116.30  Aligned_cols=93  Identities=25%  Similarity=0.311  Sum_probs=85.3

Q ss_pred             hhhcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCC-chhhhcCCcc
Q 046642           11 EKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNI-PQQLSELTSL   89 (207)
Q Consensus        11 ~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~-p~~~~~l~~L   89 (207)
                      ...+++|+.|+|++|.|+ .+|..|+.+++|+.|+|++|.+++ +| .++.+++|+.|++++|.+++.. |..+..+++|
T Consensus       459 ~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L  535 (567)
T 1dce_A          459 LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRL  535 (567)
T ss_dssp             GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTC
T ss_pred             ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCC
Confidence            456789999999999999 889999999999999999999995 77 8999999999999999999776 9999999999


Q ss_pred             ceecCCCCcCcCCCCCC
Q 046642           90 EFFDVSDNLLTGPIPRG  106 (207)
Q Consensus        90 ~~l~l~~N~l~~~~p~~  106 (207)
                      +.|++++|++++..|..
T Consensus       536 ~~L~L~~N~l~~~~~~~  552 (567)
T 1dce_A          536 VLLNLQGNSLCQEEGIQ  552 (567)
T ss_dssp             CEEECTTSGGGGSSSCT
T ss_pred             CEEEecCCcCCCCccHH
Confidence            99999999999776643

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.42  E-value=2.8e-13  Score=122.29  Aligned_cols=109  Identities=18%  Similarity=0.166  Sum_probs=70.8

Q ss_pred             hcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCC-cccCCCCCCCCEEecCCCCCCCCCchhhhcCCccce
Q 046642           13 LSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRI-PLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEF   91 (207)
Q Consensus        13 ~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~-p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~   91 (207)
                      ++++++.|+|++|.|++..|..|.++++|++|+|++|...+.+ |..|.++++|++|++++|.+++..|+.|..+++|++
T Consensus        22 lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~  101 (844)
T 3j0a_A           22 VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFE  101 (844)
T ss_dssp             SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCC
T ss_pred             CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCE
Confidence            6677777777777777666666777777777777777544344 566667777777777777776666666666777777


Q ss_pred             ecCCCCcCcCCCCC---CCCCCCCCcccccCCC
Q 046642           92 FDVSDNLLTGPIPR---GKQFDTFGKSSFDGNP  121 (207)
Q Consensus        92 l~l~~N~l~~~~p~---~~~~~~l~~~~~~~n~  121 (207)
                      |++++|.+++.+|.   ...+..++.+++++|.
T Consensus       102 L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~  134 (844)
T 3j0a_A          102 LRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQ  134 (844)
T ss_dssp             EECTTCCCSSCCSTTCCCSSCSSCCEEEEESCC
T ss_pred             eeCcCCCCCcccccCccccccCCCCEEECCCCc
Confidence            77777766654443   2334455555555553

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.42  E-value=3.2e-13  Score=99.64  Aligned_cols=107  Identities=19%  Similarity=0.147  Sum_probs=87.0

Q ss_pred             hhhhcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCch--hhhcCC
Q 046642           10 YEKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQ--QLSELT   87 (207)
Q Consensus        10 ~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~--~~~~l~   87 (207)
                      +....++|+.|++++|.|++.  ..+..+++|+.|++++|.+++..+..+..+++|+.|++++|.++ .+|.  .+..++
T Consensus        37 ~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~  113 (176)
T 1a9n_A           37 LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLK  113 (176)
T ss_dssp             GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCT
T ss_pred             hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCC
Confidence            344556999999999999964  67899999999999999999554455689999999999999997 6776  789999


Q ss_pred             ccceecCCCCcCcCCCCC-----CCCCCCCCcccccCC
Q 046642           88 SLEFFDVSDNLLTGPIPR-----GKQFDTFGKSSFDGN  120 (207)
Q Consensus        88 ~L~~l~l~~N~l~~~~p~-----~~~~~~l~~~~~~~n  120 (207)
                      +|+.|++++|+++ .+|.     ...++.+..+++.+|
T Consensus       114 ~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n  150 (176)
T 1a9n_A          114 SLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKV  150 (176)
T ss_dssp             TCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEEC
T ss_pred             CCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcC
Confidence            9999999999998 4454     234555666666655

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.41  E-value=1.4e-13  Score=106.29  Aligned_cols=109  Identities=19%  Similarity=0.208  Sum_probs=85.0

Q ss_pred             hcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCc-CCCCCcccCCCCCCCCEEecCC-CCCCCCCchhhhcCCccc
Q 046642           13 LSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNN-LQGRIPLSLSNLTAIESMDLSS-NMLSGNIPQQLSELTSLE   90 (207)
Q Consensus        13 ~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~-l~~~~p~~~~~l~~L~~L~ls~-N~l~~~~p~~~~~l~~L~   90 (207)
                      ++.+++.|++++|.+++..+..|.++++|+.|++++|. ++...+..|..+++|+.|++++ |.+++..+..|..+++|+
T Consensus        29 ~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~  108 (239)
T 2xwt_C           29 LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLK  108 (239)
T ss_dssp             CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCC
T ss_pred             CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCC
Confidence            56688889999998886666678888889999999886 7755556788888899999988 888866666788888888


Q ss_pred             eecCCCCcCcCCCCCCCCCCCCC---cccccCCCC
Q 046642           91 FFDVSDNLLTGPIPRGKQFDTFG---KSSFDGNPG  122 (207)
Q Consensus        91 ~l~l~~N~l~~~~p~~~~~~~l~---~~~~~~n~~  122 (207)
                      .|++++|.+++ +|....+..+.   .+++.+|+.
T Consensus       109 ~L~l~~n~l~~-lp~~~~l~~L~~L~~L~l~~N~~  142 (239)
T 2xwt_C          109 FLGIFNTGLKM-FPDLTKVYSTDIFFILEITDNPY  142 (239)
T ss_dssp             EEEEEEECCCS-CCCCTTCCBCCSEEEEEEESCTT
T ss_pred             EEeCCCCCCcc-ccccccccccccccEEECCCCcc
Confidence            88888888885 66555555565   677777743

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.40  E-value=5.9e-13  Score=114.55  Aligned_cols=110  Identities=19%  Similarity=0.108  Sum_probs=71.4

Q ss_pred             hhcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCccce
Q 046642           12 KLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEF   91 (207)
Q Consensus        12 ~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~   91 (207)
                      .++++++.|++++|.+++..+..|.++++|+.|++++|.+++..|..|..+++|++|++++|.+++..|..|..+++|++
T Consensus        25 ~l~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  104 (570)
T 2z63_A           25 NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQK  104 (570)
T ss_dssp             SSCSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCE
T ss_pred             CccccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccc
Confidence            35566777777777777666666777777777777777776555666777777777777777776555566667777777


Q ss_pred             ecCCCCcCcCCCC-CCCCCCCCCcccccCCC
Q 046642           92 FDVSDNLLTGPIP-RGKQFDTFGKSSFDGNP  121 (207)
Q Consensus        92 l~l~~N~l~~~~p-~~~~~~~l~~~~~~~n~  121 (207)
                      |++++|.+++..+ ....+..++.+++.+|.
T Consensus       105 L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~  135 (570)
T 2z63_A          105 LVAVETNLASLENFPIGHLKTLKELNVAHNL  135 (570)
T ss_dssp             EECTTSCCCCSTTCSCTTCTTCCEEECCSSC
T ss_pred             ccccccccccCCCccccccccccEEecCCCc
Confidence            7777776664332 12344555555555553

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.40  E-value=2.7e-13  Score=118.89  Aligned_cols=109  Identities=19%  Similarity=0.312  Sum_probs=77.5

Q ss_pred             hhcccccEEEccCCCCCCC-----------------Cchhcc--CCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCC
Q 046642           12 KLSNLITAIILSNNSFVGE-----------------IPTSIA--NLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSS   72 (207)
Q Consensus        12 ~~l~~L~~L~Ls~n~i~~~-----------------~p~~~~--~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~   72 (207)
                      .-+++|++|+|++|.+++.                 +|..++  ++++|++|++++|.+.+.+|..++++++|+.|++++
T Consensus       203 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~  282 (636)
T 4eco_A          203 MRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVAC  282 (636)
T ss_dssp             GGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTT
T ss_pred             hcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcC
Confidence            3467788888888888864                 787777  888888888888888778888888888888888888


Q ss_pred             CC-CCC-CCchhhhcC------CccceecCCCCcCcCCCCC---CCCCCCCCcccccCCC
Q 046642           73 NM-LSG-NIPQQLSEL------TSLEFFDVSDNLLTGPIPR---GKQFDTFGKSSFDGNP  121 (207)
Q Consensus        73 N~-l~~-~~p~~~~~l------~~L~~l~l~~N~l~~~~p~---~~~~~~l~~~~~~~n~  121 (207)
                      |. ++| .+|..++.+      ++|+.|++++|.++ .+|.   ...+..+..+++.+|.
T Consensus       283 n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~  341 (636)
T 4eco_A          283 NRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQ  341 (636)
T ss_dssp             CTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCC
T ss_pred             CCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCc
Confidence            87 776 667666655      66777777777666 5554   2344445555555443

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.40  E-value=3.2e-13  Score=115.27  Aligned_cols=106  Identities=25%  Similarity=0.211  Sum_probs=79.3

Q ss_pred             hcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCcccee
Q 046642           13 LSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEFF   92 (207)
Q Consensus        13 ~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l   92 (207)
                      +++++++|++++|.+++..|..|.++++|++|++++|++++..|..|..+++|++|++++|.++ .+|..  .+++|++|
T Consensus        19 ~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L   95 (520)
T 2z7x_B           19 LSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHL   95 (520)
T ss_dssp             CCTTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEE
T ss_pred             ccccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEE
Confidence            4577888888888888777778888888888888888888666778888888888888888888 56655  77888888


Q ss_pred             cCCCCcCcC-CCCC-CCCCCCCCcccccCCC
Q 046642           93 DVSDNLLTG-PIPR-GKQFDTFGKSSFDGNP  121 (207)
Q Consensus        93 ~l~~N~l~~-~~p~-~~~~~~l~~~~~~~n~  121 (207)
                      ++++|.+++ .+|. ...+..+..+++.+|.
T Consensus        96 ~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~  126 (520)
T 2z7x_B           96 DLSFNAFDALPICKEFGNMSQLKFLGLSTTH  126 (520)
T ss_dssp             ECCSSCCSSCCCCGGGGGCTTCCEEEEEESS
T ss_pred             eccCCccccccchhhhccCCcceEEEecCcc
Confidence            888888876 3443 2345556666666654

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.39  E-value=6.6e-13  Score=114.59  Aligned_cols=108  Identities=25%  Similarity=0.192  Sum_probs=89.0

Q ss_pred             hhcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCccce
Q 046642           12 KLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEF   91 (207)
Q Consensus        12 ~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~   91 (207)
                      .++++++.|++++|.|++..|..|.++++|++|++++|.+++..|..|..+++|++|++++|.++ .+|..  .+++|++
T Consensus        49 ~~~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~  125 (562)
T 3a79_B           49 DLPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRH  125 (562)
T ss_dssp             TSCTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSE
T ss_pred             CCCCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCE
Confidence            45688999999999999877788999999999999999999877888999999999999999998 66765  7889999


Q ss_pred             ecCCCCcCcC-CCCC-CCCCCCCCcccccCCCC
Q 046642           92 FDVSDNLLTG-PIPR-GKQFDTFGKSSFDGNPG  122 (207)
Q Consensus        92 l~l~~N~l~~-~~p~-~~~~~~l~~~~~~~n~~  122 (207)
                      |++++|.+++ .+|. ...+..+..+++++|..
T Consensus       126 L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l  158 (562)
T 3a79_B          126 LDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKF  158 (562)
T ss_dssp             EECCSSCCSBCCCCGGGGGCTTCCEEEEECSBC
T ss_pred             EECCCCCccccCchHhhcccCcccEEecCCCcc
Confidence            9999999886 2332 34556677777777653

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.39  E-value=4e-13  Score=108.09  Aligned_cols=112  Identities=17%  Similarity=0.146  Sum_probs=78.0

Q ss_pred             hhcccccEEEccCCCCCCCCchhc-cCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCccc
Q 046642           12 KLSNLITAIILSNNSFVGEIPTSI-ANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLE   90 (207)
Q Consensus        12 ~~l~~L~~L~Ls~n~i~~~~p~~~-~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~   90 (207)
                      ..+++|++|++++|.+++..+..+ ..+++|+.|++++|.+++. |. ...+++|+.|++++|.+++ +|..+..+++|+
T Consensus       141 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~  217 (317)
T 3o53_A          141 GCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVT  217 (317)
T ss_dssp             GGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCS
T ss_pred             hccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-cc-ccccccCCEEECCCCcCCc-chhhhcccCccc
Confidence            346677777777777776555555 3677777777777777633 32 3347788888888888884 455577888888


Q ss_pred             eecCCCCcCcCCCCCCCCCCCCCcccccCCCCCCCC
Q 046642           91 FFDVSDNLLTGPIPRGKQFDTFGKSSFDGNPGLCGG  126 (207)
Q Consensus        91 ~l~l~~N~l~~~~p~~~~~~~l~~~~~~~n~~~c~~  126 (207)
                      .|++++|.+++..+....+..+..+++.+|++.|++
T Consensus       218 ~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~~~~  253 (317)
T 3o53_A          218 WISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGT  253 (317)
T ss_dssp             EEECTTSCCCEECTTCCCCTTCCEEECTTCCCBHHH
T ss_pred             EEECcCCcccchhhHhhcCCCCCEEEccCCCccCcC
Confidence            888888888853333345567777888888877654

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.39  E-value=2.1e-12  Score=113.61  Aligned_cols=108  Identities=19%  Similarity=0.169  Sum_probs=58.9

Q ss_pred             hcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCcccee
Q 046642           13 LSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEFF   92 (207)
Q Consensus        13 ~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l   92 (207)
                      .+++|++|++++|.+++..|..|.++++|++|++++|.+++..+..|..+++|++|++++|.+++..|..|..+++|++|
T Consensus        47 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  126 (680)
T 1ziw_A           47 RYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITL  126 (680)
T ss_dssp             GGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEE
T ss_pred             CCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEE
Confidence            34555556666665555555555555666666666666553333345566666666666666654444555566666666


Q ss_pred             cCCCCcCcCCCCCC-CCCCCCCcccccCC
Q 046642           93 DVSDNLLTGPIPRG-KQFDTFGKSSFDGN  120 (207)
Q Consensus        93 ~l~~N~l~~~~p~~-~~~~~l~~~~~~~n  120 (207)
                      ++++|.+++..|.. ..+..++.+++.+|
T Consensus       127 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n  155 (680)
T 1ziw_A          127 DLSHNGLSSTKLGTQVQLENLQELLLSNN  155 (680)
T ss_dssp             ECCSSCCSCCCCCSSSCCTTCCEEECCSS
T ss_pred             ECCCCcccccCchhhcccccCCEEEccCC
Confidence            66666655544432 23344444444444

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.38  E-value=1.2e-13  Score=110.80  Aligned_cols=87  Identities=22%  Similarity=0.260  Sum_probs=61.3

Q ss_pred             cccccEEEccCCCCCCCCchhc--cCCCCCCEEECcCCcCCCCCcccCCCC-----CCCCEEecCCCCCCCCCchhhhcC
Q 046642           14 SNLITAIILSNNSFVGEIPTSI--ANLKGLRNLDLSNNNLQGRIPLSLSNL-----TAIESMDLSSNMLSGNIPQQLSEL   86 (207)
Q Consensus        14 l~~L~~L~Ls~n~i~~~~p~~~--~~l~~L~~L~Ls~n~l~~~~p~~~~~l-----~~L~~L~ls~N~l~~~~p~~~~~l   86 (207)
                      +++|++|++++|.+++..|..+  ..+++|+.|++++|.+++. |..+..+     ++|++|++++|.+++..|..+..+
T Consensus        94 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l  172 (312)
T 1wwl_A           94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF  172 (312)
T ss_dssp             TSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCC
T ss_pred             cCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccC
Confidence            5677777777777777677665  6777777777777777754 6655555     677777777777776666667777


Q ss_pred             CccceecCCCCcCcC
Q 046642           87 TSLEFFDVSDNLLTG  101 (207)
Q Consensus        87 ~~L~~l~l~~N~l~~  101 (207)
                      ++|+.|++++|++.+
T Consensus       173 ~~L~~L~Ls~N~l~~  187 (312)
T 1wwl_A          173 PALSTLDLSDNPELG  187 (312)
T ss_dssp             SSCCEEECCSCTTCH
T ss_pred             CCCCEEECCCCCcCc
Confidence            777777777776554

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.38  E-value=1.4e-12  Score=105.41  Aligned_cols=85  Identities=27%  Similarity=0.300  Sum_probs=50.9

Q ss_pred             hcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCcccee
Q 046642           13 LSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEFF   92 (207)
Q Consensus        13 ~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l   92 (207)
                      ++++++.|++++|.+++..|..|.++++|+.|++++|.+++..|..|..+++|+.|++++|.++ .+|..+.  ++|++|
T Consensus        52 ~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L  128 (332)
T 2ft3_A           52 ISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP--SSLVEL  128 (332)
T ss_dssp             CCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-SCCSSCC--TTCCEE
T ss_pred             CCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC-ccCcccc--ccCCEE
Confidence            3456666666666666555556666666666666666666555666666666666666666665 3443322  445555


Q ss_pred             cCCCCcCc
Q 046642           93 DVSDNLLT  100 (207)
Q Consensus        93 ~l~~N~l~  100 (207)
                      ++++|.++
T Consensus       129 ~l~~n~i~  136 (332)
T 2ft3_A          129 RIHDNRIR  136 (332)
T ss_dssp             ECCSSCCC
T ss_pred             ECCCCccC
Confidence            55555554

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.37  E-value=3.3e-12  Score=115.45  Aligned_cols=108  Identities=26%  Similarity=0.328  Sum_probs=69.7

Q ss_pred             hhcccccEEEccCCCCCCCCchhccCC--------CCCCEEECcCCcCCCCCcccCC--CCCCCCEEecCCCCCCCCCch
Q 046642           12 KLSNLITAIILSNNSFVGEIPTSIANL--------KGLRNLDLSNNNLQGRIPLSLS--NLTAIESMDLSSNMLSGNIPQ   81 (207)
Q Consensus        12 ~~l~~L~~L~Ls~n~i~~~~p~~~~~l--------~~L~~L~Ls~n~l~~~~p~~~~--~l~~L~~L~ls~N~l~~~~p~   81 (207)
                      ..+++|+.|+|++|.|+ .+|..+...        ++|+.|+|++|+++ .+|..+.  .+++|+.|++++|.+++ +|.
T Consensus       694 ~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~  770 (876)
T 4ecn_A          694 ATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPT  770 (876)
T ss_dssp             HTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCC
T ss_pred             ccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cch
Confidence            34567777777777777 555543322        26777777777777 5666665  67777777777777775 566


Q ss_pred             hhhcCCccceecCCC------CcCcCCCCCC-CCCCCCCcccccCCCC
Q 046642           82 QLSELTSLEFFDVSD------NLLTGPIPRG-KQFDTFGKSSFDGNPG  122 (207)
Q Consensus        82 ~~~~l~~L~~l~l~~------N~l~~~~p~~-~~~~~l~~~~~~~n~~  122 (207)
                      .+..+++|+.|++++      |.+.+.+|.. ..+..+..+++++|..
T Consensus       771 ~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L  818 (876)
T 4ecn_A          771 QPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI  818 (876)
T ss_dssp             GGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC
T ss_pred             hhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC
Confidence            667777777777755      5566666643 3455666666666654

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.37  E-value=2e-12  Score=104.75  Aligned_cols=107  Identities=19%  Similarity=0.225  Sum_probs=67.3

Q ss_pred             hhhcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCccc
Q 046642           11 EKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLE   90 (207)
Q Consensus        11 ~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~   90 (207)
                      ...+++|+.|++++|.+++. +. +..+++|+.|++++|.+++ + +.+..+++|+.|++++|.+++.  ..+..+++|+
T Consensus       217 ~~~~~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~  290 (347)
T 4fmz_A          217 VANMTRLNSLKIGNNKITDL-SP-LANLSQLTWLEIGTNQISD-I-NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLN  290 (347)
T ss_dssp             GGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCS
T ss_pred             hhcCCcCCEEEccCCccCCC-cc-hhcCCCCCEEECCCCccCC-C-hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCC
Confidence            44566777777777777743 33 6677777777777777763 3 3566677777777777777643  3466667777


Q ss_pred             eecCCCCcCcCCCCCC-CCCCCCCcccccCCCCC
Q 046642           91 FFDVSDNLLTGPIPRG-KQFDTFGKSSFDGNPGL  123 (207)
Q Consensus        91 ~l~l~~N~l~~~~p~~-~~~~~l~~~~~~~n~~~  123 (207)
                      .|++++|.+++..|.. ..++.+..+++.+|+..
T Consensus       291 ~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~  324 (347)
T 4fmz_A          291 SLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHIT  324 (347)
T ss_dssp             EEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCC
T ss_pred             EEECcCCcCCCcChhHhhccccCCEEEccCCccc
Confidence            7777777666544332 23455666666666543

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.35  E-value=1.2e-12  Score=105.14  Aligned_cols=106  Identities=13%  Similarity=0.110  Sum_probs=59.6

Q ss_pred             ccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCC--CcccC--CCCCCCCEEecCCCCCCCCCc----hhhhcC
Q 046642           15 NLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGR--IPLSL--SNLTAIESMDLSSNMLSGNIP----QQLSEL   86 (207)
Q Consensus        15 ~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~--~p~~~--~~l~~L~~L~ls~N~l~~~~p----~~~~~l   86 (207)
                      ++|++|++++|.+++..|..|..+++|+.|++++|++.+.  .|..+  ..+++|+.|++++|.+++ ++    ..+..+
T Consensus       149 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~~~~l  227 (312)
T 1wwl_A          149 PGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMET-PSGVCSALAAAR  227 (312)
T ss_dssp             TTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCC-HHHHHHHHHHTT
T ss_pred             CCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcc-hHHHHHHHHhcC
Confidence            5666666666666655556666666666666666665533  22233  556666666666666652 22    223455


Q ss_pred             CccceecCCCCcCcCCCCC--CCCCCCCCcccccCCC
Q 046642           87 TSLEFFDVSDNLLTGPIPR--GKQFDTFGKSSFDGNP  121 (207)
Q Consensus        87 ~~L~~l~l~~N~l~~~~p~--~~~~~~l~~~~~~~n~  121 (207)
                      ++|+.|++++|.+++..|.  ...+..+..+++++|.
T Consensus       228 ~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~  264 (312)
T 1wwl_A          228 VQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTG  264 (312)
T ss_dssp             CCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSC
T ss_pred             CCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCc
Confidence            6666666666666654432  2234555666666654

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.35  E-value=1e-13  Score=112.98  Aligned_cols=115  Identities=23%  Similarity=0.365  Sum_probs=70.5

Q ss_pred             hhcccccEEEccCC-CCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCC------------------------CCCC
Q 046642           12 KLSNLITAIILSNN-SFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNL------------------------TAIE   66 (207)
Q Consensus        12 ~~l~~L~~L~Ls~n-~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l------------------------~~L~   66 (207)
                      ..+++|++|++++| .++...+..|..+++|+.|++++|.+++..|..+..+                        ++|+
T Consensus       146 ~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~  225 (353)
T 2z80_A          146 SHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVE  225 (353)
T ss_dssp             TTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEE
T ss_pred             ccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhccccc
Confidence            34555666666665 3444444555556666666666666655555555554                        4555


Q ss_pred             EEecCCCCCCCC-------------------------------CchhhhcCCccceecCCCCcCcCCCCCC--CCCCCCC
Q 046642           67 SMDLSSNMLSGN-------------------------------IPQQLSELTSLEFFDVSDNLLTGPIPRG--KQFDTFG  113 (207)
Q Consensus        67 ~L~ls~N~l~~~-------------------------------~p~~~~~l~~L~~l~l~~N~l~~~~p~~--~~~~~l~  113 (207)
                      .|++++|.+++.                               +|..+..+++|+.|++++|.++ .+|..  ..+..+.
T Consensus       226 ~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~  304 (353)
T 2z80_A          226 CLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQ  304 (353)
T ss_dssp             EEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCC
T ss_pred             EEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCC
Confidence            555555555542                               2334566778888888888887 45543  4567777


Q ss_pred             cccccCCCCCCCCC
Q 046642          114 KSSFDGNPGLCGGP  127 (207)
Q Consensus       114 ~~~~~~n~~~c~~~  127 (207)
                      .+++.+|++.|+|+
T Consensus       305 ~L~L~~N~~~~~~~  318 (353)
T 2z80_A          305 KIWLHTNPWDCSCP  318 (353)
T ss_dssp             EEECCSSCBCCCHH
T ss_pred             EEEeeCCCccCcCC
Confidence            88888888888774

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.35  E-value=2.8e-12  Score=102.11  Aligned_cols=103  Identities=24%  Similarity=0.347  Sum_probs=59.6

Q ss_pred             hhhcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCccc
Q 046642           11 EKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLE   90 (207)
Q Consensus        11 ~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~   90 (207)
                      ...+++|+.|++++|.+++ +| .+..+++|+.|++++|.+++ + ..+..+++|+.|++++|.+++.  ..+..+++|+
T Consensus        86 l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L~~n~i~~-~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~  159 (291)
T 1h6t_A           86 LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLD  159 (291)
T ss_dssp             GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECTTSCCCC-C-GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCS
T ss_pred             cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEEECCCCcCCC-C-hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCC
Confidence            3455666677777776663 23 36666666666666666663 2 3455666666666666666633  3455666666


Q ss_pred             eecCCCCcCcCCCCCCCCCCCCCcccccCC
Q 046642           91 FFDVSDNLLTGPIPRGKQFDTFGKSSFDGN  120 (207)
Q Consensus        91 ~l~l~~N~l~~~~p~~~~~~~l~~~~~~~n  120 (207)
                      .|++++|.+++..| ...+..+..+++++|
T Consensus       160 ~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N  188 (291)
T 1h6t_A          160 TLSLEDNQISDIVP-LAGLTKLQNLYLSKN  188 (291)
T ss_dssp             EEECCSSCCCCCGG-GTTCTTCCEEECCSS
T ss_pred             EEEccCCccccchh-hcCCCccCEEECCCC
Confidence            66666666654333 334444555555554

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.35  E-value=6.2e-12  Score=101.42  Aligned_cols=109  Identities=16%  Similarity=0.171  Sum_probs=69.2

Q ss_pred             hhhcccccEEEccCCCCCC--CCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCc
Q 046642           11 EKLSNLITAIILSNNSFVG--EIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTS   88 (207)
Q Consensus        11 ~~~l~~L~~L~Ls~n~i~~--~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~   88 (207)
                      +..+++|+.|++++|.++.  ..+..+..+++|+.|++++|.++ .+|..+.  ++|+.|++++|.+++..|..+..+++
T Consensus       141 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~  217 (330)
T 1xku_A          141 FNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLP--PSLTELHLDGNKITKVDAASLKGLNN  217 (330)
T ss_dssp             HTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTT
T ss_pred             hcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc-cCCcccc--ccCCEEECCCCcCCccCHHHhcCCCC
Confidence            3446667777777777653  55566667777777777777776 4554433  66777777777777665666777777


Q ss_pred             cceecCCCCcCcCCCCC-CCCCCCCCcccccCCCC
Q 046642           89 LEFFDVSDNLLTGPIPR-GKQFDTFGKSSFDGNPG  122 (207)
Q Consensus        89 L~~l~l~~N~l~~~~p~-~~~~~~l~~~~~~~n~~  122 (207)
                      |+.|++++|.+++..+. ...+..+..+++.+|..
T Consensus       218 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l  252 (330)
T 1xku_A          218 LAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKL  252 (330)
T ss_dssp             CCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCC
T ss_pred             CCEEECCCCcCceeChhhccCCCCCCEEECCCCcC
Confidence            77777777777654442 23445566666666643

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.34  E-value=5.1e-13  Score=118.84  Aligned_cols=89  Identities=31%  Similarity=0.522  Sum_probs=81.2

Q ss_pred             hcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCcccee
Q 046642           13 LSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEFF   92 (207)
Q Consensus        13 ~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l   92 (207)
                      .+++|+.|+|++|.|+ .+|..|..+++|+.|+|++|.++ .+|..|+.+++|+.|+|++|.|+ .+|..|..+++|+.|
T Consensus       245 ~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L  321 (727)
T 4b8c_D          245 KYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFL  321 (727)
T ss_dssp             GCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCE
T ss_pred             CCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEE
Confidence            5788999999999999 88999999999999999999999 78999999999999999999998 788889999999999


Q ss_pred             cCCCCcCcCCCC
Q 046642           93 DVSDNLLTGPIP  104 (207)
Q Consensus        93 ~l~~N~l~~~~p  104 (207)
                      ++++|.+++.+|
T Consensus       322 ~L~~N~l~~~~p  333 (727)
T 4b8c_D          322 GVEGNPLEKQFL  333 (727)
T ss_dssp             ECTTSCCCSHHH
T ss_pred             eCCCCccCCCCh
Confidence            999999886544

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.33  E-value=3.6e-12  Score=102.19  Aligned_cols=83  Identities=22%  Similarity=0.351  Sum_probs=42.5

Q ss_pred             hhcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCccce
Q 046642           12 KLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEF   91 (207)
Q Consensus        12 ~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~   91 (207)
                      ..+++|+.|++++|.+++ ++. +..+++|+.|++++|.+++ ++. +..+++|+.|++++|.+++ ++. +..+++|+.
T Consensus       104 ~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~  177 (308)
T 1h6u_A          104 AGLQSIKTLDLTSTQITD-VTP-LAGLSNLQVLYLDLNQITN-ISP-LAGLTNLQYLSIGNAQVSD-LTP-LANLSKLTT  177 (308)
T ss_dssp             TTCTTCCEEECTTSCCCC-CGG-GTTCTTCCEEECCSSCCCC-CGG-GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCE
T ss_pred             cCCCCCCEEECCCCCCCC-chh-hcCCCCCCEEECCCCccCc-Ccc-ccCCCCccEEEccCCcCCC-Chh-hcCCCCCCE
Confidence            345556666666666653 222 5555555555555555552 222 4455555555555555553 222 445555555


Q ss_pred             ecCCCCcCc
Q 046642           92 FDVSDNLLT  100 (207)
Q Consensus        92 l~l~~N~l~  100 (207)
                      |++++|.++
T Consensus       178 L~l~~n~l~  186 (308)
T 1h6u_A          178 LKADDNKIS  186 (308)
T ss_dssp             EECCSSCCC
T ss_pred             EECCCCccC
Confidence            555555554

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.33  E-value=1.6e-12  Score=104.18  Aligned_cols=108  Identities=20%  Similarity=0.235  Sum_probs=72.1

Q ss_pred             hhcccccEEEccCCCCCCC--Cc--hhccCCCCCCEEECcCCcCCCCCcc----cCCCCCCCCEEecCCCCCCCCCchhh
Q 046642           12 KLSNLITAIILSNNSFVGE--IP--TSIANLKGLRNLDLSNNNLQGRIPL----SLSNLTAIESMDLSSNMLSGNIPQQL   83 (207)
Q Consensus        12 ~~l~~L~~L~Ls~n~i~~~--~p--~~~~~l~~L~~L~Ls~n~l~~~~p~----~~~~l~~L~~L~ls~N~l~~~~p~~~   83 (207)
                      ..+++|++|+|++|.+.+.  ++  ..+..+++|++|++++|.++ .++.    .+..+++|++|++++|.+++..|..+
T Consensus       166 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~  244 (310)
T 4glp_A          166 RAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSA  244 (310)
T ss_dssp             CCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCC
T ss_pred             ccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhcCCCCCEEECCCCCCCccchhhH
Confidence            3567788888888887642  22  22356777888888888776 3333    24566778888888888876667666


Q ss_pred             hcC---CccceecCCCCcCcCCCCCCCCCCCCCcccccCCCC
Q 046642           84 SEL---TSLEFFDVSDNLLTGPIPRGKQFDTFGKSSFDGNPG  122 (207)
Q Consensus        84 ~~l---~~L~~l~l~~N~l~~~~p~~~~~~~l~~~~~~~n~~  122 (207)
                      ..+   ++|+.|++++|.++ .+|.... ..+..+++++|..
T Consensus       245 ~~~~~~~~L~~L~Ls~N~l~-~lp~~~~-~~L~~L~Ls~N~l  284 (310)
T 4glp_A          245 PRCMWSSALNSLNLSFAGLE-QVPKGLP-AKLRVLDLSSNRL  284 (310)
T ss_dssp             SSCCCCTTCCCEECCSSCCC-SCCSCCC-SCCSCEECCSCCC
T ss_pred             HhccCcCcCCEEECCCCCCC-chhhhhc-CCCCEEECCCCcC
Confidence            665   57888888888877 5555432 5667777777653

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.33  E-value=7.5e-12  Score=98.20  Aligned_cols=101  Identities=20%  Similarity=0.277  Sum_probs=49.8

Q ss_pred             hhcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCccce
Q 046642           12 KLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEF   91 (207)
Q Consensus        12 ~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~   91 (207)
                      ..+++|+.|++++|.|++. +. +..+++|+.|++++|++++ +|... . ++|+.|++++|.+++ ++ .+..+++|+.
T Consensus        60 ~~l~~L~~L~L~~N~i~~~-~~-l~~l~~L~~L~L~~N~l~~-l~~~~-~-~~L~~L~L~~N~l~~-~~-~l~~l~~L~~  132 (263)
T 1xeu_A           60 QFFTNLKELHLSHNQISDL-SP-LKDLTKLEELSVNRNRLKN-LNGIP-S-ACLSRLFLDNNELRD-TD-SLIHLKNLEI  132 (263)
T ss_dssp             GGCTTCCEEECCSSCCCCC-GG-GTTCSSCCEEECCSSCCSC-CTTCC-C-SSCCEEECCSSCCSB-SG-GGTTCTTCCE
T ss_pred             hhCCCCCEEECCCCccCCC-hh-hccCCCCCEEECCCCccCC-cCccc-c-CcccEEEccCCccCC-Ch-hhcCcccccE
Confidence            4456666666666666643 32 6666666666666666653 33211 1 444444444444442 22 2444555555


Q ss_pred             ecCCCCcCcCCCCCCCCCCCCCcccccCC
Q 046642           92 FDVSDNLLTGPIPRGKQFDTFGKSSFDGN  120 (207)
Q Consensus        92 l~l~~N~l~~~~p~~~~~~~l~~~~~~~n  120 (207)
                      |++++|++++ +|....+..+..+++.+|
T Consensus       133 L~Ls~N~i~~-~~~l~~l~~L~~L~L~~N  160 (263)
T 1xeu_A          133 LSIRNNKLKS-IVMLGFLSKLEVLDLHGN  160 (263)
T ss_dssp             EECTTSCCCB-CGGGGGCTTCCEEECTTS
T ss_pred             EECCCCcCCC-ChHHccCCCCCEEECCCC
Confidence            5555555543 232233334444444444

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.32  E-value=9.1e-12  Score=99.07  Aligned_cols=105  Identities=27%  Similarity=0.341  Sum_probs=79.5

Q ss_pred             hhhcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCccc
Q 046642           11 EKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLE   90 (207)
Q Consensus        11 ~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~   90 (207)
                      ...+++|+.|++++|.+++..+  +..+++|+.|++++|.+++ +| .+..+++|+.|++++|.+++ + ..+..+++|+
T Consensus        64 ~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L~~n~i~~-~-~~l~~l~~L~  137 (291)
T 1h6t_A           64 IQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLE  137 (291)
T ss_dssp             GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECTTSCCCC-C-GGGGGCTTCC
T ss_pred             HhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEEECCCCcCCC-C-hhhcCCCCCC
Confidence            4557788888888888885433  7888888888888888873 33 47888888888888888885 3 4577888888


Q ss_pred             eecCCCCcCcCCCCCCCCCCCCCcccccCCCC
Q 046642           91 FFDVSDNLLTGPIPRGKQFDTFGKSSFDGNPG  122 (207)
Q Consensus        91 ~l~l~~N~l~~~~p~~~~~~~l~~~~~~~n~~  122 (207)
                      .|++++|.+++. +....+..+..+++++|..
T Consensus       138 ~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l  168 (291)
T 1h6t_A          138 SLYLGNNKITDI-TVLSRLTKLDTLSLEDNQI  168 (291)
T ss_dssp             EEECCSSCCCCC-GGGGGCTTCSEEECCSSCC
T ss_pred             EEEccCCcCCcc-hhhccCCCCCEEEccCCcc
Confidence            888888888854 5555566777777777743

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.32  E-value=9.8e-13  Score=118.82  Aligned_cols=107  Identities=18%  Similarity=0.251  Sum_probs=81.5

Q ss_pred             hcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCc-CCC-CCcccCCCC-------CCCCEEecCCCCCCCCCch--
Q 046642           13 LSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNN-LQG-RIPLSLSNL-------TAIESMDLSSNMLSGNIPQ--   81 (207)
Q Consensus        13 ~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~-l~~-~~p~~~~~l-------~~L~~L~ls~N~l~~~~p~--   81 (207)
                      .+++|+.|+|++|.+.+.+|..|+++++|+.|+|++|+ +++ .+|..++.+       ++|+.|++++|.++ .+|.  
T Consensus       489 ~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~  567 (876)
T 4ecn_A          489 NLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASA  567 (876)
T ss_dssp             GCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHH
T ss_pred             cCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChh
Confidence            57788889999988888888888888888888888887 776 677655444       38888888888888 7777  


Q ss_pred             hhhcCCccceecCCCCcCcCCCCCCCCCCCCCcccccCCC
Q 046642           82 QLSELTSLEFFDVSDNLLTGPIPRGKQFDTFGKSSFDGNP  121 (207)
Q Consensus        82 ~~~~l~~L~~l~l~~N~l~~~~p~~~~~~~l~~~~~~~n~  121 (207)
                      .+..+++|+.|++++|.++ .+|....+..+..+++.+|.
T Consensus       568 ~l~~L~~L~~L~Ls~N~l~-~lp~~~~L~~L~~L~Ls~N~  606 (876)
T 4ecn_A          568 SLQKMVKLGLLDCVHNKVR-HLEAFGTNVKLTDLKLDYNQ  606 (876)
T ss_dssp             HHTTCTTCCEEECTTSCCC-BCCCCCTTSEESEEECCSSC
T ss_pred             hhhcCCCCCEEECCCCCcc-cchhhcCCCcceEEECcCCc
Confidence            7788888888888888877 66654455555666666554

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.32  E-value=8.5e-12  Score=97.88  Aligned_cols=110  Identities=21%  Similarity=0.224  Sum_probs=91.1

Q ss_pred             hhhhhhcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCC
Q 046642            8 LEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELT   87 (207)
Q Consensus         8 ~~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~   87 (207)
                      ......+++|+.|++++|.+++ +|.. .. ++|+.|++++|.+++ ++ .+..+++|+.|++++|.+++. + .+..++
T Consensus        78 ~~~l~~l~~L~~L~L~~N~l~~-l~~~-~~-~~L~~L~L~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~  150 (263)
T 1xeu_A           78 LSPLKDLTKLEELSVNRNRLKN-LNGI-PS-ACLSRLFLDNNELRD-TD-SLIHLKNLEILSIRNNKLKSI-V-MLGFLS  150 (263)
T ss_dssp             CGGGTTCSSCCEEECCSSCCSC-CTTC-CC-SSCCEEECCSSCCSB-SG-GGTTCTTCCEEECTTSCCCBC-G-GGGGCT
T ss_pred             ChhhccCCCCCEEECCCCccCC-cCcc-cc-CcccEEEccCCccCC-Ch-hhcCcccccEEECCCCcCCCC-h-HHccCC
Confidence            3335678899999999999995 4543 33 899999999999985 44 689999999999999999954 4 688999


Q ss_pred             ccceecCCCCcCcCCCCCCCCCCCCCcccccCCCCCCC
Q 046642           88 SLEFFDVSDNLLTGPIPRGKQFDTFGKSSFDGNPGLCG  125 (207)
Q Consensus        88 ~L~~l~l~~N~l~~~~p~~~~~~~l~~~~~~~n~~~c~  125 (207)
                      +|+.|++++|.+++. +....+..+..+++.+|+..+.
T Consensus       151 ~L~~L~L~~N~i~~~-~~l~~l~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          151 KLEVLDLHGNEITNT-GGLTRLKKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             TCCEEECTTSCCCBC-TTSTTCCCCCEEEEEEEEEECC
T ss_pred             CCCEEECCCCcCcch-HHhccCCCCCEEeCCCCcccCC
Confidence            999999999999976 5556677888889999886554

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.31  E-value=7.9e-13  Score=112.50  Aligned_cols=107  Identities=19%  Similarity=0.091  Sum_probs=78.3

Q ss_pred             cccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCC-CCCCCCEEecCCCCCCCCCchhhhcCCcccee
Q 046642           14 SNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLS-NLTAIESMDLSSNMLSGNIPQQLSELTSLEFF   92 (207)
Q Consensus        14 l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~-~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l   92 (207)
                      +++|+.|++++|.+++..|..++.+++|+.|+|++|.+++..|..+. .+++|+.|++++|.+++. |. ...+++|+.|
T Consensus       119 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L  196 (487)
T 3oja_A          119 GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTL  196 (487)
T ss_dssp             CSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEE
T ss_pred             cCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-cc-cccCCCCCEE
Confidence            46677788888888777777777788888888888888776676665 677888888888888754 32 3357788888


Q ss_pred             cCCCCcCcCCCCCCCCCCCCCcccccCCCC
Q 046642           93 DVSDNLLTGPIPRGKQFDTFGKSSFDGNPG  122 (207)
Q Consensus        93 ~l~~N~l~~~~p~~~~~~~l~~~~~~~n~~  122 (207)
                      ++++|.+++..|....+..+..+++++|..
T Consensus       197 ~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l  226 (487)
T 3oja_A          197 DLSSNKLAFMGPEFQSAAGVTWISLRNNKL  226 (487)
T ss_dssp             ECCSSCCCEECGGGGGGTTCSEEECTTSCC
T ss_pred             ECCCCCCCCCCHhHcCCCCccEEEecCCcC
Confidence            888888887666555566677777777753

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.30  E-value=3.1e-12  Score=102.45  Aligned_cols=108  Identities=16%  Similarity=0.163  Sum_probs=78.4

Q ss_pred             cccccEEEccCCCCCCCCchhc--cCCCCCCEEECcCCcCCCCCc----ccCCCCCCCCEEecCCCCCCCCCchhhhcCC
Q 046642           14 SNLITAIILSNNSFVGEIPTSI--ANLKGLRNLDLSNNNLQGRIP----LSLSNLTAIESMDLSSNMLSGNIPQQLSELT   87 (207)
Q Consensus        14 l~~L~~L~Ls~n~i~~~~p~~~--~~l~~L~~L~Ls~n~l~~~~p----~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~   87 (207)
                      +++|+.|++++|.+++..|..+  ..+++|+.|++++|.+++..+    ..+..+++|+.|++++|.+++..|..+..++
T Consensus        90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~  169 (310)
T 4glp_A           90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFP  169 (310)
T ss_dssp             HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCT
T ss_pred             cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCC
Confidence            4568899999999888888877  788888888888888876544    3445678888888888888877777788888


Q ss_pred             ccceecCCCCcCcCC--CC-CC--CCCCCCCcccccCCC
Q 046642           88 SLEFFDVSDNLLTGP--IP-RG--KQFDTFGKSSFDGNP  121 (207)
Q Consensus        88 ~L~~l~l~~N~l~~~--~p-~~--~~~~~l~~~~~~~n~  121 (207)
                      +|++|++++|++.+.  ++ ..  ..++.+..+++.+|.
T Consensus       170 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~  208 (310)
T 4glp_A          170 ALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTG  208 (310)
T ss_dssp             TCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSC
T ss_pred             CCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCC
Confidence            888888888886541  11 11  234455555555553

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.30  E-value=1.1e-11  Score=99.36  Aligned_cols=104  Identities=22%  Similarity=0.376  Sum_probs=68.3

Q ss_pred             hhhcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCccc
Q 046642           11 EKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLE   90 (207)
Q Consensus        11 ~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~   90 (207)
                      ...+++|+.|++++|.+++ ++ .+..+++|+.|++++|.+++ ++. +..+++|+.|++++|.+++. +. +..+++|+
T Consensus        81 ~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~  154 (308)
T 1h6u_A           81 LKNLTKITELELSGNPLKN-VS-AIAGLQSIKTLDLTSTQITD-VTP-LAGLSNLQVLYLDLNQITNI-SP-LAGLTNLQ  154 (308)
T ss_dssp             GTTCCSCCEEECCSCCCSC-CG-GGTTCTTCCEEECTTSCCCC-CGG-GTTCTTCCEEECCSSCCCCC-GG-GGGCTTCC
T ss_pred             HccCCCCCEEEccCCcCCC-ch-hhcCCCCCCEEECCCCCCCC-chh-hcCCCCCCEEECCCCccCcC-cc-ccCCCCcc
Confidence            4456677777777777764 33 56777777777777777763 443 67777777777777777743 33 66777777


Q ss_pred             eecCCCCcCcCCCCCCCCCCCCCcccccCCC
Q 046642           91 FFDVSDNLLTGPIPRGKQFDTFGKSSFDGNP  121 (207)
Q Consensus        91 ~l~l~~N~l~~~~p~~~~~~~l~~~~~~~n~  121 (207)
                      .|++++|.+++..+ ...+..+..+++.+|.
T Consensus       155 ~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~  184 (308)
T 1h6u_A          155 YLSIGNAQVSDLTP-LANLSKLTTLKADDNK  184 (308)
T ss_dssp             EEECCSSCCCCCGG-GTTCTTCCEEECCSSC
T ss_pred             EEEccCCcCCCChh-hcCCCCCCEEECCCCc
Confidence            77777777774332 4444555555655553

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.27  E-value=1.2e-11  Score=107.92  Aligned_cols=101  Identities=23%  Similarity=0.339  Sum_probs=51.0

Q ss_pred             cccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCccceec
Q 046642           14 SNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEFFD   93 (207)
Q Consensus        14 l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l~   93 (207)
                      +++|+.|+|++|.|++ + +.+..+++|+.|+|++|.+++.  ..+..+++|+.|+|++|.+++..|  +..+++|+.|+
T Consensus       108 l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~  181 (605)
T 1m9s_A          108 LKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLY  181 (605)
T ss_dssp             CTTCCEEECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEE
T ss_pred             CCCCCEEEecCCCCCC-C-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEE
Confidence            3444444444444442 1 2244455555555555555422  345555555555555555554433  55555666666


Q ss_pred             CCCCcCcCCCCCCCCCCCCCcccccCCC
Q 046642           94 VSDNLLTGPIPRGKQFDTFGKSSFDGNP  121 (207)
Q Consensus        94 l~~N~l~~~~p~~~~~~~l~~~~~~~n~  121 (207)
                      +++|.+++ +|....+..+..+++.+|+
T Consensus       182 Ls~N~i~~-l~~l~~l~~L~~L~L~~N~  208 (605)
T 1m9s_A          182 LSKNHISD-LRALAGLKNLDVLELFSQE  208 (605)
T ss_dssp             CCSSCCCB-CGGGTTCTTCSEEECCSEE
T ss_pred             CcCCCCCC-ChHHccCCCCCEEEccCCc
Confidence            66665553 2444444555555555554

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.25  E-value=4.4e-12  Score=97.78  Aligned_cols=108  Identities=19%  Similarity=0.182  Sum_probs=63.5

Q ss_pred             hhcccccEEEccCCC-CCCCCchhccCCCCCCEEECcC-CcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCcc
Q 046642           12 KLSNLITAIILSNNS-FVGEIPTSIANLKGLRNLDLSN-NNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSL   89 (207)
Q Consensus        12 ~~l~~L~~L~Ls~n~-i~~~~p~~~~~l~~L~~L~Ls~-n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L   89 (207)
                      ..+++|+.|++++|. ++...+..|.++++|+.|++++ |.+++..+..|..+++|+.|++++|.+++ +|. +..+++|
T Consensus        52 ~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L  129 (239)
T 2xwt_C           52 SNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM-FPD-LTKVYST  129 (239)
T ss_dssp             TTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCS-CCC-CTTCCBC
T ss_pred             cCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc-ccc-ccccccc
Confidence            345667777777775 6644455666777777777776 66665445566666677777777666663 444 5555555


Q ss_pred             c---eecCCCC-cCcCCCCC-CCCCCCCC-cccccCCC
Q 046642           90 E---FFDVSDN-LLTGPIPR-GKQFDTFG-KSSFDGNP  121 (207)
Q Consensus        90 ~---~l~l~~N-~l~~~~p~-~~~~~~l~-~~~~~~n~  121 (207)
                      +   .|++++| .+++..+. ...+..+. .+++.+|.
T Consensus       130 ~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~  167 (239)
T 2xwt_C          130 DIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNG  167 (239)
T ss_dssp             CSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCC
T ss_pred             ccccEEECCCCcchhhcCcccccchhcceeEEEcCCCC
Confidence            5   6666666 55533332 12334444 55555543

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.25  E-value=3.7e-11  Score=104.77  Aligned_cols=101  Identities=25%  Similarity=0.374  Sum_probs=54.0

Q ss_pred             cccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCccceec
Q 046642           14 SNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEFFD   93 (207)
Q Consensus        14 l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l~   93 (207)
                      +++|+.|+|++|.|++ +| .+..+++|+.|+|++|.+.+ + +.+..+++|+.|+|++|.+++.  ..+..+++|+.|+
T Consensus        86 l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~  159 (605)
T 1m9s_A           86 LKNLGWLFLDENKIKD-LS-SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLS  159 (605)
T ss_dssp             CTTCCEEECCSSCCCC-CT-TSTTCTTCCEEECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEE
T ss_pred             CCCCCEEECcCCCCCC-Ch-hhccCCCCCEEEecCCCCCC-C-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEE
Confidence            3444444444444442 22 34445555555555555542 2 2355555566666666666533  3456666666666


Q ss_pred             CCCCcCcCCCCCCCCCCCCCcccccCCC
Q 046642           94 VSDNLLTGPIPRGKQFDTFGKSSFDGNP  121 (207)
Q Consensus        94 l~~N~l~~~~p~~~~~~~l~~~~~~~n~  121 (207)
                      +++|.+++..| ...+..+..+++++|.
T Consensus       160 Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~  186 (605)
T 1m9s_A          160 LEDNQISDIVP-LAGLTKLQNLYLSKNH  186 (605)
T ss_dssp             CCSSCCCCCGG-GTTCTTCCEEECCSSC
T ss_pred             CcCCcCCCchh-hccCCCCCEEECcCCC
Confidence            66666665444 4455566666666664

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.23  E-value=2.4e-11  Score=102.55  Aligned_cols=83  Identities=30%  Similarity=0.383  Sum_probs=40.4

Q ss_pred             hhcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCccce
Q 046642           12 KLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEF   91 (207)
Q Consensus        12 ~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~   91 (207)
                      ..+++|+.|++++|.+++..+  +..+++|+.|++++|.+++..+  +..+++|+.|++++|.+++..|  +..+++|+.
T Consensus       262 ~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~  335 (466)
T 1o6v_A          262 SGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQR  335 (466)
T ss_dssp             TTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCE
T ss_pred             hcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCE
Confidence            344555556666555553222  4555555555555555553221  4445555555555555554333  344444444


Q ss_pred             ecCCCCcCc
Q 046642           92 FDVSDNLLT  100 (207)
Q Consensus        92 l~l~~N~l~  100 (207)
                      |++++|.++
T Consensus       336 L~l~~n~l~  344 (466)
T 1o6v_A          336 LFFYNNKVS  344 (466)
T ss_dssp             EECCSSCCC
T ss_pred             eECCCCccC
Confidence            444444444

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.23  E-value=3.9e-12  Score=102.28  Aligned_cols=106  Identities=19%  Similarity=0.105  Sum_probs=62.4

Q ss_pred             cccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccC-CCCCCCCEEecCCCCCCCCCchhhhcCCcccee
Q 046642           14 SNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSL-SNLTAIESMDLSSNMLSGNIPQQLSELTSLEFF   92 (207)
Q Consensus        14 l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~-~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l   92 (207)
                      +++|+.|++++|.+++..+..+..+++|+.|++++|.+++..+..+ ..+++|+.|++++|.+++. |. ...+++|+.|
T Consensus       119 ~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L  196 (317)
T 3o53_A          119 GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTL  196 (317)
T ss_dssp             CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEE
T ss_pred             cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-cc-ccccccCCEE
Confidence            4556666666666665555556666666666666666665444444 3566666666666666632 32 2236666666


Q ss_pred             cCCCCcCcCCCCCCCCCCCCCcccccCCC
Q 046642           93 DVSDNLLTGPIPRGKQFDTFGKSSFDGNP  121 (207)
Q Consensus        93 ~l~~N~l~~~~p~~~~~~~l~~~~~~~n~  121 (207)
                      ++++|.+++..+....+..+..+++++|.
T Consensus       197 ~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~  225 (317)
T 3o53_A          197 DLSSNKLAFMGPEFQSAAGVTWISLRNNK  225 (317)
T ss_dssp             ECCSSCCCEECGGGGGGTTCSEEECTTSC
T ss_pred             ECCCCcCCcchhhhcccCcccEEECcCCc
Confidence            66666666544443444556666666664

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.21  E-value=6.5e-11  Score=99.88  Aligned_cols=104  Identities=24%  Similarity=0.340  Sum_probs=68.9

Q ss_pred             hhhcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCccc
Q 046642           11 EKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLE   90 (207)
Q Consensus        11 ~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~   90 (207)
                      ...+++|+.|++++|.+++..|  +..+++|+.|++++|.+++. +. +..+++|+.|++++|.+++..|  +..+++|+
T Consensus       239 l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~  312 (466)
T 1o6v_A          239 LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNI-SP-LAGLTALTNLELNENQLEDISP--ISNLKNLT  312 (466)
T ss_dssp             GGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCC-GG-GTTCTTCSEEECCSSCCSCCGG--GGGCTTCS
T ss_pred             hhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcc-cc-ccCCCccCeEEcCCCcccCchh--hcCCCCCC
Confidence            3445666777777777664433  66677777777777777643 33 6677777777777777775433  67777888


Q ss_pred             eecCCCCcCcCCCCCCCCCCCCCcccccCCC
Q 046642           91 FFDVSDNLLTGPIPRGKQFDTFGKSSFDGNP  121 (207)
Q Consensus        91 ~l~l~~N~l~~~~p~~~~~~~l~~~~~~~n~  121 (207)
                      .|++++|.+++..| ...+..+..+++.+|.
T Consensus       313 ~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~  342 (466)
T 1o6v_A          313 YLTLYFNNISDISP-VSSLTKLQRLFFYNNK  342 (466)
T ss_dssp             EEECCSSCCSCCGG-GGGCTTCCEEECCSSC
T ss_pred             EEECcCCcCCCchh-hccCccCCEeECCCCc
Confidence            88888888776554 3345566666666664

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.19  E-value=1.4e-10  Score=93.83  Aligned_cols=81  Identities=26%  Similarity=0.396  Sum_probs=40.4

Q ss_pred             hhcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCccce
Q 046642           12 KLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEF   91 (207)
Q Consensus        12 ~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~   91 (207)
                      ..+++|++|++++|.+++ ++. +..+++|+.|++++|.++ .+| .+..+++|++|++++|.+++ ++. +..+++|+.
T Consensus        63 ~~~~~L~~L~l~~n~i~~-~~~-~~~l~~L~~L~L~~n~i~-~~~-~~~~l~~L~~L~l~~n~i~~-~~~-~~~l~~L~~  136 (347)
T 4fmz_A           63 EYLTNLEYLNLNGNQITD-ISP-LSNLVKLTNLYIGTNKIT-DIS-ALQNLTNLRELYLNEDNISD-ISP-LANLTKMYS  136 (347)
T ss_dssp             GGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCC-CCG-GGTTCTTCSEEECTTSCCCC-CGG-GTTCTTCCE
T ss_pred             hhcCCccEEEccCCcccc-chh-hhcCCcCCEEEccCCccc-Cch-HHcCCCcCCEEECcCCcccC-chh-hccCCceeE
Confidence            344555555555555552 222 555555555555555554 222 35555555555555555552 222 444555555


Q ss_pred             ecCCCCc
Q 046642           92 FDVSDNL   98 (207)
Q Consensus        92 l~l~~N~   98 (207)
                      |++++|.
T Consensus       137 L~l~~n~  143 (347)
T 4fmz_A          137 LNLGANH  143 (347)
T ss_dssp             EECTTCT
T ss_pred             EECCCCC
Confidence            5555553

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.14  E-value=2.4e-11  Score=98.96  Aligned_cols=95  Identities=15%  Similarity=0.134  Sum_probs=79.2

Q ss_pred             hhhhcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCc-ccCCCCCCCCE-EecCCCCCCCCCchhhhcCC
Q 046642           10 YEKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIP-LSLSNLTAIES-MDLSSNMLSGNIPQQLSELT   87 (207)
Q Consensus        10 ~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~-L~ls~N~l~~~~p~~~~~l~   87 (207)
                      ...++++++.|+|++|.|+...++.|.++++|+.|+|++|.+.+.+| ..|.+++++.. +.++.|+++...|+.|..++
T Consensus        25 P~~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~  104 (350)
T 4ay9_X           25 PSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLP  104 (350)
T ss_dssp             CTTCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCT
T ss_pred             CcCcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhcc
Confidence            34577899999999999995555679999999999999999865555 56888988775 66778999977788899999


Q ss_pred             ccceecCCCCcCcCCCC
Q 046642           88 SLEFFDVSDNLLTGPIP  104 (207)
Q Consensus        88 ~L~~l~l~~N~l~~~~p  104 (207)
                      +|++|++++|.++...+
T Consensus       105 ~L~~L~l~~n~l~~~~~  121 (350)
T 4ay9_X          105 NLQYLLISNTGIKHLPD  121 (350)
T ss_dssp             TCCEEEEEEECCSSCCC
T ss_pred             ccccccccccccccCCc
Confidence            99999999999985433

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.12  E-value=3.5e-10  Score=95.43  Aligned_cols=81  Identities=27%  Similarity=0.343  Sum_probs=44.5

Q ss_pred             hcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCcccee
Q 046642           13 LSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEFF   92 (207)
Q Consensus        13 ~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l   92 (207)
                      -+++|++|++++|.+++. | .+..+++|++|++++|.+++ +|  ++.+++|++|++++|.+++. |  ++.+++|++|
T Consensus        40 ~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~-~~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L  111 (457)
T 3bz5_A           40 QLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITT-LD--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYL  111 (457)
T ss_dssp             HHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEE
T ss_pred             HcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCe-Ec--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEE
Confidence            355566666666666532 3 45556666666666666553 22  55555555555555555532 2  4555555555


Q ss_pred             cCCCCcCcC
Q 046642           93 DVSDNLLTG  101 (207)
Q Consensus        93 ~l~~N~l~~  101 (207)
                      ++++|.+++
T Consensus       112 ~L~~N~l~~  120 (457)
T 3bz5_A          112 NCDTNKLTK  120 (457)
T ss_dssp             ECCSSCCSC
T ss_pred             ECCCCcCCe
Confidence            555555553

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.12  E-value=2.4e-10  Score=98.92  Aligned_cols=52  Identities=27%  Similarity=0.369  Sum_probs=22.2

Q ss_pred             CCCCCEEecCCCCCCCCCchhhhcCCccceecCCCCcCcCCCCCCCCCCCCCcccccCC
Q 046642           62 LTAIESMDLSSNMLSGNIPQQLSELTSLEFFDVSDNLLTGPIPRGKQFDTFGKSSFDGN  120 (207)
Q Consensus        62 l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~~~~~l~~~~~~~n  120 (207)
                      +++|+.|++++|.+++ +|.   .+++|+.|++++|.+++ +|. .. ..+..+++++|
T Consensus       139 l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~-~~L~~L~Ls~N  190 (571)
T 3cvr_A          139 PALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP-ESLEALDVSTN  190 (571)
T ss_dssp             CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC-TTCCEEECCSS
T ss_pred             CccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh-CCCCEEECcCC
Confidence            3444444444444442 332   23444455555555443 333 11 34444445444

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.12  E-value=5.4e-10  Score=94.31  Aligned_cols=99  Identities=17%  Similarity=0.207  Sum_probs=76.7

Q ss_pred             hhhcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCccc
Q 046642           11 EKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLE   90 (207)
Q Consensus        11 ~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~   90 (207)
                      ...+++|++|++++|.+++. |  ++.+++|++|++++|.+++ +|  ++.+++|++|++++|.+++ +|  +..+++|+
T Consensus        60 l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~-~~--~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~  130 (457)
T 3bz5_A           60 IEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTN-LD--VTPLTKLTYLNCDTNKLTK-LD--VSQNPLLT  130 (457)
T ss_dssp             GGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSC-CC--CTTCTTCCEEECCSSCCSC-CC--CTTCTTCC
T ss_pred             hcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCce-ee--cCCCCcCCEEECCCCcCCe-ec--CCCCCcCC
Confidence            35678899999999999864 4  7888999999999999885 33  7888999999999999885 44  78888899


Q ss_pred             eecCCCCcCcCCCCCCCCCCCCCcccccCC
Q 046642           91 FFDVSDNLLTGPIPRGKQFDTFGKSSFDGN  120 (207)
Q Consensus        91 ~l~l~~N~l~~~~p~~~~~~~l~~~~~~~n  120 (207)
                      .|++++|.+++. + ...+..+..+++.+|
T Consensus       131 ~L~l~~N~l~~l-~-l~~l~~L~~L~l~~n  158 (457)
T 3bz5_A          131 YLNCARNTLTEI-D-VSHNTQLTELDCHLN  158 (457)
T ss_dssp             EEECTTSCCSCC-C-CTTCTTCCEEECTTC
T ss_pred             EEECCCCcccee-c-cccCCcCCEEECCCC
Confidence            999999988863 3 334455555555555

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.12  E-value=2.5e-13  Score=102.07  Aligned_cols=110  Identities=21%  Similarity=0.251  Sum_probs=78.8

Q ss_pred             hhhcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCccc
Q 046642           11 EKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLE   90 (207)
Q Consensus        11 ~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~   90 (207)
                      ...+++|++|++++|.+++ +| .+..+++|+.|++++|.++ .+|..+..+++|+.|++++|.+++ +| .+..+++|+
T Consensus        44 ~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~  118 (198)
T 1ds9_A           44 LSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNLR  118 (198)
T ss_dssp             HHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSS
T ss_pred             HhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCCC
Confidence            3456778888888888875 56 6777888888888888887 667666667788888888888884 45 577778888


Q ss_pred             eecCCCCcCcCCCC--CCCCCCCCCcccccCCCCCCC
Q 046642           91 FFDVSDNLLTGPIP--RGKQFDTFGKSSFDGNPGLCG  125 (207)
Q Consensus        91 ~l~l~~N~l~~~~p--~~~~~~~l~~~~~~~n~~~c~  125 (207)
                      .|++++|.+++..+  ....+..+..+++.+|+..|.
T Consensus       119 ~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~  155 (198)
T 1ds9_A          119 VLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYND  155 (198)
T ss_dssp             EEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHH
T ss_pred             EEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccc
Confidence            88888888774221  234456677777777765443

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.12  E-value=2.7e-10  Score=98.64  Aligned_cols=92  Identities=25%  Similarity=0.425  Sum_probs=45.2

Q ss_pred             cccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCccceec
Q 046642           14 SNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEFFD   93 (207)
Q Consensus        14 l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l~   93 (207)
                      +++|+.|+|++|.|+ .+|   ..+++|+.|++++|.+++ +|. +..  +|+.|++++|.+++ +|.   .+++|+.|+
T Consensus        79 ~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~  146 (571)
T 3cvr_A           79 PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYIN  146 (571)
T ss_dssp             CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEE
T ss_pred             cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEe
Confidence            344555555555555 344   234555555555555553 444 333  55555555555553 333   345555555


Q ss_pred             CCCCcCcCCCCCCCCCCCCCcccccCC
Q 046642           94 VSDNLLTGPIPRGKQFDTFGKSSFDGN  120 (207)
Q Consensus        94 l~~N~l~~~~p~~~~~~~l~~~~~~~n  120 (207)
                      +++|.+++ +|.  .+..+..+++++|
T Consensus       147 Ls~N~l~~-lp~--~l~~L~~L~Ls~N  170 (571)
T 3cvr_A          147 ADNNQLTM-LPE--LPTSLEVLSVRNN  170 (571)
T ss_dssp             CCSSCCSC-CCC--CCTTCCEEECCSS
T ss_pred             CCCCccCc-CCC--cCCCcCEEECCCC
Confidence            55555553 333  2334444444444

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.04  E-value=3.1e-11  Score=98.71  Aligned_cols=95  Identities=23%  Similarity=0.309  Sum_probs=67.6

Q ss_pred             hhhhhcccccEEEccCCCCCCCCc----hhccCCC-CCCEEECcCCcCCCCCcccCCCC-----CCCCEEecCCCCCCCC
Q 046642            9 EYEKLSNLITAIILSNNSFVGEIP----TSIANLK-GLRNLDLSNNNLQGRIPLSLSNL-----TAIESMDLSSNMLSGN   78 (207)
Q Consensus         9 ~~~~~l~~L~~L~Ls~n~i~~~~p----~~~~~l~-~L~~L~Ls~n~l~~~~p~~~~~l-----~~L~~L~ls~N~l~~~   78 (207)
                      ++...+++|+.|+|++|.+++..+    ..+..++ +|+.|+|++|.+++..+..+..+     ++|+.|++++|.+++.
T Consensus        16 ~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~   95 (362)
T 3goz_A           16 EFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYK   95 (362)
T ss_dssp             HHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGS
T ss_pred             HHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChH
Confidence            445566678888888888876655    6677777 78888888888876666666554     7788888888888766


Q ss_pred             Cchhhhc----C-CccceecCCCCcCcCCC
Q 046642           79 IPQQLSE----L-TSLEFFDVSDNLLTGPI  103 (207)
Q Consensus        79 ~p~~~~~----l-~~L~~l~l~~N~l~~~~  103 (207)
                      .+..+..    + ++|+.|++++|.+++..
T Consensus        96 ~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~  125 (362)
T 3goz_A           96 SSDELVKTLAAIPFTITVLDLGWNDFSSKS  125 (362)
T ss_dssp             CHHHHHHHHHTSCTTCCEEECCSSCGGGSC
T ss_pred             HHHHHHHHHHhCCCCccEEECcCCcCCcHH
Confidence            6554333    3 67888888888776543

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=98.99  E-value=1.8e-09  Score=91.05  Aligned_cols=81  Identities=27%  Similarity=0.390  Sum_probs=53.2

Q ss_pred             hcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCcccee
Q 046642           13 LSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEFF   92 (207)
Q Consensus        13 ~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l   92 (207)
                      .+++|++|++++|.+++ +| .|+.+++|++|++++|++++ +|..+   .+|+.|++++|.+++ +| .+..+++|+.|
T Consensus       129 ~~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L  200 (454)
T 1jl5_A          129 LPPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAI  200 (454)
T ss_dssp             CCTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEE
T ss_pred             CCCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEE
Confidence            34567777777777774 55 47777777777777777763 55432   366677777777664 45 36666666666


Q ss_pred             cCCCCcCcC
Q 046642           93 DVSDNLLTG  101 (207)
Q Consensus        93 ~l~~N~l~~  101 (207)
                      ++++|.+++
T Consensus       201 ~l~~N~l~~  209 (454)
T 1jl5_A          201 YADNNSLKK  209 (454)
T ss_dssp             ECCSSCCSS
T ss_pred             ECCCCcCCc
Confidence            666666664

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=98.98  E-value=4.8e-10  Score=94.54  Aligned_cols=96  Identities=24%  Similarity=0.315  Sum_probs=51.2

Q ss_pred             ccccEEEccCCCCCCCCchhccCC-CCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCccceec
Q 046642           15 NLITAIILSNNSFVGEIPTSIANL-KGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEFFD   93 (207)
Q Consensus        15 ~~L~~L~Ls~n~i~~~~p~~~~~l-~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l~   93 (207)
                      ++|+.|++++|.+++ +    ..+ ++|+.|++++|++++ +|..   +++|+.|++++|.++ .+|.   .+++|+.|+
T Consensus       297 ~~L~~L~l~~N~l~~-i----~~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~  363 (454)
T 1jl5_A          297 PNLYYLNASSNEIRS-L----CDLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPE---LPQNLKQLH  363 (454)
T ss_dssp             TTCCEEECCSSCCSE-E----CCCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC---CCTTCCEEE
T ss_pred             CcCCEEECcCCcCCc-c----cCCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-cccc---hhhhccEEE
Confidence            444555555555442 1    122 477888888888774 5543   467888888888887 4565   467788888


Q ss_pred             CCCCcCcC--CCCCCC-CC-------------CCCCcccccCCCCC
Q 046642           94 VSDNLLTG--PIPRGK-QF-------------DTFGKSSFDGNPGL  123 (207)
Q Consensus        94 l~~N~l~~--~~p~~~-~~-------------~~l~~~~~~~n~~~  123 (207)
                      +++|++++  .+|... .+             ..+..+++++|+..
T Consensus       364 L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~  409 (454)
T 1jl5_A          364 VEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLR  409 (454)
T ss_dssp             CCSSCCSSCCCCCTTCCEEECCC-----------------------
T ss_pred             CCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCC
Confidence            88888876  455431 11             34566666666544

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.97  E-value=1.1e-12  Score=98.47  Aligned_cols=107  Identities=21%  Similarity=0.281  Sum_probs=89.9

Q ss_pred             hhhcccccEEEccCCCCCCCCch------hccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhh
Q 046642           11 EKLSNLITAIILSNNSFVGEIPT------SIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLS   84 (207)
Q Consensus        11 ~~~l~~L~~L~Ls~n~i~~~~p~------~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~   84 (207)
                      ......++.++++.+.+++..|.      .+..+++|+.|++++|.+++ +| .+..+++|+.|++++|.++ .+|..+.
T Consensus        14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~   90 (198)
T 1ds9_A           14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDA   90 (198)
T ss_dssp             HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHH
T ss_pred             HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhh
Confidence            34566788888888888887776      89999999999999999985 77 8899999999999999999 7888888


Q ss_pred             cCCccceecCCCCcCcCCCCCCCCCCCCCcccccCCC
Q 046642           85 ELTSLEFFDVSDNLLTGPIPRGKQFDTFGKSSFDGNP  121 (207)
Q Consensus        85 ~l~~L~~l~l~~N~l~~~~p~~~~~~~l~~~~~~~n~  121 (207)
                      .+++|+.|++++|.+++ +|....+..+..+++.+|.
T Consensus        91 ~~~~L~~L~L~~N~l~~-l~~~~~l~~L~~L~l~~N~  126 (198)
T 1ds9_A           91 VADTLEELWISYNQIAS-LSGIEKLVNLRVLYMSNNK  126 (198)
T ss_dssp             HHHHCSEEEEEEEECCC-HHHHHHHHHSSEEEESEEE
T ss_pred             cCCcCCEEECcCCcCCc-CCccccCCCCCEEECCCCc
Confidence            88999999999999985 4544445567777787774

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=98.97  E-value=2.2e-09  Score=93.88  Aligned_cols=75  Identities=27%  Similarity=0.396  Sum_probs=38.1

Q ss_pred             CCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCccceecCCCCcCcCCCCC-CCCCCCCCcccc
Q 046642           39 KGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEFFDVSDNLLTGPIPR-GKQFDTFGKSSF  117 (207)
Q Consensus        39 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~-~~~~~~l~~~~~  117 (207)
                      ++|+.|++++|.+++ +|   ..+++|+.|++++|.|+ .+|.   .+++|+.|++++|.++ .+|. ...+..+..+++
T Consensus       221 ~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L  291 (622)
T 3g06_A          221 SGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNL  291 (622)
T ss_dssp             TTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEEC
T ss_pred             CCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEe
Confidence            345555555555542 33   23345555555555555 3443   3455666666666665 3343 233445555566


Q ss_pred             cCCCC
Q 046642          118 DGNPG  122 (207)
Q Consensus       118 ~~n~~  122 (207)
                      .+|+.
T Consensus       292 ~~N~l  296 (622)
T 3g06_A          292 EGNPL  296 (622)
T ss_dssp             CSCCC
T ss_pred             cCCCC
Confidence            66654

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=98.97  E-value=3e-11  Score=97.36  Aligned_cols=84  Identities=14%  Similarity=0.243  Sum_probs=38.0

Q ss_pred             cccccEEEccCCCCCCCCchhccCCCCCCEEECcCC-cCCC-CCcccCCCCCCCCEEecCCC-CCCCC-CchhhhcCC-c
Q 046642           14 SNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNN-NLQG-RIPLSLSNLTAIESMDLSSN-MLSGN-IPQQLSELT-S   88 (207)
Q Consensus        14 l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n-~l~~-~~p~~~~~l~~L~~L~ls~N-~l~~~-~p~~~~~l~-~   88 (207)
                      +++|+.|++++|.+++..+..+..+++|+.|++++| .+++ .++..+..+++|+.|++++| .+++. ++..+..++ +
T Consensus       117 ~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~  196 (336)
T 2ast_B          117 CSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSET  196 (336)
T ss_dssp             BCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTT
T ss_pred             CCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccC
Confidence            344444444444444444444444444444444444 3332 13333444444555555544 44422 233444444 5


Q ss_pred             cceecCCCC
Q 046642           89 LEFFDVSDN   97 (207)
Q Consensus        89 L~~l~l~~N   97 (207)
                      |+.|++++|
T Consensus       197 L~~L~l~~~  205 (336)
T 2ast_B          197 ITQLNLSGY  205 (336)
T ss_dssp             CCEEECCSC
T ss_pred             CCEEEeCCC
Confidence            555555554

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=98.95  E-value=6.8e-11  Score=97.33  Aligned_cols=111  Identities=15%  Similarity=0.222  Sum_probs=61.9

Q ss_pred             hcccccEEEccCCCCCC-----CCchhccCCCCCCEEECcCCcCC----CCCcccCCCCCCCCEEecCCCCCCCC----C
Q 046642           13 LSNLITAIILSNNSFVG-----EIPTSIANLKGLRNLDLSNNNLQ----GRIPLSLSNLTAIESMDLSSNMLSGN----I   79 (207)
Q Consensus        13 ~l~~L~~L~Ls~n~i~~-----~~p~~~~~l~~L~~L~Ls~n~l~----~~~p~~~~~l~~L~~L~ls~N~l~~~----~   79 (207)
                      .+++|+.|++++|.|+.     ..|..+..+++|+.|+|++|.++    +.+|..+..+++|+.|++++|.+++.    +
T Consensus       185 ~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l  264 (386)
T 2ca6_A          185 SHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAV  264 (386)
T ss_dssp             HCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHH
T ss_pred             hCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHH
Confidence            34466666666666651     23335556666666666666663    34555566666666666666666543    3


Q ss_pred             chhhhc--CCccceecCCCCcCcC----CCCCCC--CCCCCCcccccCCCCC
Q 046642           80 PQQLSE--LTSLEFFDVSDNLLTG----PIPRGK--QFDTFGKSSFDGNPGL  123 (207)
Q Consensus        80 p~~~~~--l~~L~~l~l~~N~l~~----~~p~~~--~~~~l~~~~~~~n~~~  123 (207)
                      |..+..  +++|+.|++++|.+++    .+|...  .++.+..+++.+|+..
T Consensus       265 ~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~  316 (386)
T 2ca6_A          265 VDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS  316 (386)
T ss_dssp             HHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred             HHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCC
Confidence            444422  6666666666666664    233321  2355566666666544

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=98.94  E-value=1.1e-09  Score=95.75  Aligned_cols=84  Identities=24%  Similarity=0.382  Sum_probs=73.1

Q ss_pred             hcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCcccee
Q 046642           13 LSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEFF   92 (207)
Q Consensus        13 ~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l   92 (207)
                      .+++|+.|++++|.|++ +|   ..+++|+.|++++|.++ .+|.   .+++|+.|++++|.|+ .+|..+..+++|+.|
T Consensus       219 ~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L  289 (622)
T 3g06_A          219 LPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTV  289 (622)
T ss_dssp             CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEE
T ss_pred             CCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEE
Confidence            45788999999999984 55   45689999999999998 6676   6789999999999999 789999999999999


Q ss_pred             cCCCCcCcCCCCC
Q 046642           93 DVSDNLLTGPIPR  105 (207)
Q Consensus        93 ~l~~N~l~~~~p~  105 (207)
                      ++++|++++..|.
T Consensus       290 ~L~~N~l~~~~~~  302 (622)
T 3g06_A          290 NLEGNPLSERTLQ  302 (622)
T ss_dssp             ECCSCCCCHHHHH
T ss_pred             EecCCCCCCcCHH
Confidence            9999999976654

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=98.90  E-value=4.3e-10  Score=90.52  Aligned_cols=108  Identities=18%  Similarity=0.262  Sum_probs=61.7

Q ss_pred             cccccEEEccCC-CCCC-CCchhccCCCCCCEEECcCC-cCCCC-CcccCCCCC-CCCEEecCCC--CCC-CCCchhhhc
Q 046642           14 SNLITAIILSNN-SFVG-EIPTSIANLKGLRNLDLSNN-NLQGR-IPLSLSNLT-AIESMDLSSN--MLS-GNIPQQLSE   85 (207)
Q Consensus        14 l~~L~~L~Ls~n-~i~~-~~p~~~~~l~~L~~L~Ls~n-~l~~~-~p~~~~~l~-~L~~L~ls~N--~l~-~~~p~~~~~   85 (207)
                      +++|++|++++| .+++ .++..+..+++|+.|++++| .+++. ++..+..++ +|+.|++++|  .++ +.+|..+..
T Consensus       141 ~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~  220 (336)
T 2ast_B          141 NSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRR  220 (336)
T ss_dssp             CTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHH
T ss_pred             CCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhh
Confidence            566777777776 5554 24555666666777777776 66532 345555666 6666666666  333 244555566


Q ss_pred             CCccceecCCCCc-CcCCCC-CCCCCCCCCcccccCCC
Q 046642           86 LTSLEFFDVSDNL-LTGPIP-RGKQFDTFGKSSFDGNP  121 (207)
Q Consensus        86 l~~L~~l~l~~N~-l~~~~p-~~~~~~~l~~~~~~~n~  121 (207)
                      +++|+.|++++|. +++..+ ....+..+..+++.+|.
T Consensus       221 ~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~  258 (336)
T 2ast_B          221 CPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCY  258 (336)
T ss_dssp             CTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCT
T ss_pred             CCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCC
Confidence            6666666666666 443222 22334455555555553

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=98.87  E-value=3e-10  Score=93.49  Aligned_cols=93  Identities=15%  Similarity=0.293  Sum_probs=79.7

Q ss_pred             hhcccccEEEccCCCCC----CCCchhccCCCCCCEEECcCCcCCCC----CcccC--CCCCCCCEEecCCCCCCC----
Q 046642           12 KLSNLITAIILSNNSFV----GEIPTSIANLKGLRNLDLSNNNLQGR----IPLSL--SNLTAIESMDLSSNMLSG----   77 (207)
Q Consensus        12 ~~l~~L~~L~Ls~n~i~----~~~p~~~~~l~~L~~L~Ls~n~l~~~----~p~~~--~~l~~L~~L~ls~N~l~~----   77 (207)
                      ..+++|+.|+|++|.++    ..+|..+..+++|+.|+|++|.+++.    +|..+  +.+++|+.|++++|.+++    
T Consensus       213 ~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~  292 (386)
T 2ca6_A          213 AYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVR  292 (386)
T ss_dssp             GGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHH
T ss_pred             hcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHH
Confidence            45789999999999996    57888899999999999999999855    46666  448999999999999996    


Q ss_pred             CCchhh-hcCCccceecCCCCcCcCCCC
Q 046642           78 NIPQQL-SELTSLEFFDVSDNLLTGPIP  104 (207)
Q Consensus        78 ~~p~~~-~~l~~L~~l~l~~N~l~~~~p  104 (207)
                      .+|..+ .++++|+.|++++|.+++..+
T Consensus       293 ~l~~~l~~~l~~L~~L~l~~N~l~~~~~  320 (386)
T 2ca6_A          293 TLKTVIDEKMPDLLFLELNGNRFSEEDD  320 (386)
T ss_dssp             HHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred             HHHHHHHhcCCCceEEEccCCcCCcchh
Confidence            377777 668999999999999997653

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=98.85  E-value=1.2e-09  Score=88.98  Aligned_cols=110  Identities=23%  Similarity=0.210  Sum_probs=65.8

Q ss_pred             hhhcccccEEEccCCCCCCCCchhccCCCCCCEEECcC-CcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCcc
Q 046642           11 EKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSN-NNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSL   89 (207)
Q Consensus        11 ~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~-n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L   89 (207)
                      ......++.|+|++|.|+ .+|.......+|+.|++++ |.++...++.|..+++|+.|++++|+|+...+..+.++.+|
T Consensus       150 ~~~~~~l~~L~L~~N~i~-~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~~L~~L  228 (350)
T 4ay9_X          150 VGLSFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKL  228 (350)
T ss_dssp             TTSBSSCEEEECCSSCCC-EECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSCTTCCEE
T ss_pred             hhcchhhhhhcccccccc-CCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhhccchHh
Confidence            334456777888888887 4555555566788888764 55553333567788888888888888884433445554444


Q ss_pred             ceecCCCCcCcCCCCCCCCCCCCCcccccCCCCCCC
Q 046642           90 EFFDVSDNLLTGPIPRGKQFDTFGKSSFDGNPGLCG  125 (207)
Q Consensus        90 ~~l~l~~N~l~~~~p~~~~~~~l~~~~~~~n~~~c~  125 (207)
                      +.++.  +.++ .+|....+..+..+.+. +++.|.
T Consensus       229 ~~l~~--~~l~-~lP~l~~l~~L~~l~l~-~~~~c~  260 (350)
T 4ay9_X          229 RARST--YNLK-KLPTLEKLVALMEASLT-YPSHCC  260 (350)
T ss_dssp             ECTTC--TTCC-CCCCTTTCCSCCEEECS-CHHHHH
T ss_pred             hhccC--CCcC-cCCCchhCcChhhCcCC-CCcccc
Confidence            44433  2233 56655555556555543 455553

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=98.84  E-value=8e-10  Score=90.30  Aligned_cols=103  Identities=20%  Similarity=0.196  Sum_probs=84.1

Q ss_pred             EEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCc----ccCCCCC-CCCEEecCCCCCCCCCchhhhcC-----Cc
Q 046642           19 AIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIP----LSLSNLT-AIESMDLSSNMLSGNIPQQLSEL-----TS   88 (207)
Q Consensus        19 ~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p----~~~~~l~-~L~~L~ls~N~l~~~~p~~~~~l-----~~   88 (207)
                      .+++++|.+++.+|..+...++|+.|++++|.+++..+    ..+..++ +|+.|++++|.+++..+..+..+     ++
T Consensus         2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~   81 (362)
T 3goz_A            2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN   81 (362)
T ss_dssp             EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred             ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence            46899999999888888877889999999999986666    7788888 99999999999998878777775     99


Q ss_pred             cceecCCCCcCcCCCCCC-----CCC-CCCCcccccCCC
Q 046642           89 LEFFDVSDNLLTGPIPRG-----KQF-DTFGKSSFDGNP  121 (207)
Q Consensus        89 L~~l~l~~N~l~~~~p~~-----~~~-~~l~~~~~~~n~  121 (207)
                      |+.|++++|.+++..+..     ... ..+..+++++|.
T Consensus        82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~  120 (362)
T 3goz_A           82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWND  120 (362)
T ss_dssp             CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC
T ss_pred             ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCc
Confidence            999999999998655431     122 456667777664

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.82  E-value=4.3e-09  Score=82.60  Aligned_cols=64  Identities=25%  Similarity=0.356  Sum_probs=27.4

Q ss_pred             CCCCCEEECcCCcCCC--CCcccCCCCCCCCEEecCCCCCCCCCchhhhcCC--ccceecCCCCcCcCCC
Q 046642           38 LKGLRNLDLSNNNLQG--RIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELT--SLEFFDVSDNLLTGPI  103 (207)
Q Consensus        38 l~~L~~L~Ls~n~l~~--~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~--~L~~l~l~~N~l~~~~  103 (207)
                      +++|+.|+|++|++++  .+|..+..+++|+.|+|++|.|++.  ..+..+.  +|+.|++++|++.+.+
T Consensus       169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~  236 (267)
T 3rw6_A          169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTF  236 (267)
T ss_dssp             CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGC
T ss_pred             CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCcccc
Confidence            4444455555554443  1223333444455555555544432  1122222  4445555555544433

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.61  E-value=2.9e-09  Score=83.57  Aligned_cols=80  Identities=21%  Similarity=0.295  Sum_probs=60.4

Q ss_pred             hhcccccEEEccCCCCCC--CCchhccCCCCCCEEECcCCcCCCCCcccCCCCC--CCCEEecCCCCCCCCCch------
Q 046642           12 KLSNLITAIILSNNSFVG--EIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLT--AIESMDLSSNMLSGNIPQ------   81 (207)
Q Consensus        12 ~~l~~L~~L~Ls~n~i~~--~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~--~L~~L~ls~N~l~~~~p~------   81 (207)
                      ..+++|+.|+|++|.|++  .+|..+..+++|+.|+|++|.+++.  ..+..+.  +|+.|+|++|.+.+.+|+      
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~  244 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS  244 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence            456789999999999987  4456677889999999999999854  2333333  899999999998876652      


Q ss_pred             -hhhcCCccceec
Q 046642           82 -QLSELTSLEFFD   93 (207)
Q Consensus        82 -~~~~l~~L~~l~   93 (207)
                       .+..+++|+.||
T Consensus       245 ~il~~~P~L~~LD  257 (267)
T 3rw6_A          245 AIRERFPKLLRLD  257 (267)
T ss_dssp             HHHHHCTTCCEES
T ss_pred             HHHHHCcccCeEC
Confidence             366788888776

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=98.60  E-value=4.7e-09  Score=87.90  Aligned_cols=110  Identities=12%  Similarity=0.090  Sum_probs=76.1

Q ss_pred             hcccccEEEccCCCCCCCCchhccC-----CCCCCEEECcCCcCCCC----CcccCCCCCCCCEEecCCCCCCCCCchhh
Q 046642           13 LSNLITAIILSNNSFVGEIPTSIAN-----LKGLRNLDLSNNNLQGR----IPLSLSNLTAIESMDLSSNMLSGNIPQQL   83 (207)
Q Consensus        13 ~l~~L~~L~Ls~n~i~~~~p~~~~~-----l~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~ls~N~l~~~~p~~~   83 (207)
                      .+++|+.|++++|.+++..+..+..     .++|+.|++++|.+++.    ++..+..+++|+.|++++|.+++..+..+
T Consensus       282 ~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l  361 (461)
T 1z7x_W          282 AKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVREL  361 (461)
T ss_dssp             HCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHH
T ss_pred             hCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHH
Confidence            3678899999999887544433332     36888999999888754    45566677888889998888875544444


Q ss_pred             hc-----CCccceecCCCCcCcC----CCCCC-CCCCCCCcccccCCCC
Q 046642           84 SE-----LTSLEFFDVSDNLLTG----PIPRG-KQFDTFGKSSFDGNPG  122 (207)
Q Consensus        84 ~~-----l~~L~~l~l~~N~l~~----~~p~~-~~~~~l~~~~~~~n~~  122 (207)
                      ..     .++|+.|++++|.+++    .+|.. ...+.+..+++.+|+.
T Consensus       362 ~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i  410 (461)
T 1z7x_W          362 CQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCL  410 (461)
T ss_dssp             HHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSC
T ss_pred             HHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCC
Confidence            43     5688888888888874    33322 2345677777777753

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=98.57  E-value=1.5e-09  Score=90.92  Aligned_cols=108  Identities=15%  Similarity=0.110  Sum_probs=82.3

Q ss_pred             cccccEEEccCCCCCCC----CchhccCCCCCCEEECcCCcCCCCCcccCC-----CCCCCCEEecCCCCCCCC----Cc
Q 046642           14 SNLITAIILSNNSFVGE----IPTSIANLKGLRNLDLSNNNLQGRIPLSLS-----NLTAIESMDLSSNMLSGN----IP   80 (207)
Q Consensus        14 l~~L~~L~Ls~n~i~~~----~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~-----~l~~L~~L~ls~N~l~~~----~p   80 (207)
                      +++|+.|++++|.++..    ++..+..+++|+.|++++|.+....+..+.     ..++|+.|++++|.+++.    ++
T Consensus       255 ~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~  334 (461)
T 1z7x_W          255 SSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFS  334 (461)
T ss_dssp             TCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred             CCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHH
Confidence            67899999999999854    677788899999999999998644333332     336999999999999865    46


Q ss_pred             hhhhcCCccceecCCCCcCcCCCCCC------CCCCCCCcccccCCC
Q 046642           81 QQLSELTSLEFFDVSDNLLTGPIPRG------KQFDTFGKSSFDGNP  121 (207)
Q Consensus        81 ~~~~~l~~L~~l~l~~N~l~~~~p~~------~~~~~l~~~~~~~n~  121 (207)
                      ..+..+++|+.|++++|.+++..+..      .....+..+++.+|.
T Consensus       335 ~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~  381 (461)
T 1z7x_W          335 SVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCD  381 (461)
T ss_dssp             HHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC
T ss_pred             HHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCC
Confidence            67778899999999999987532221      013467777887774

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.54  E-value=1.5e-07  Score=75.66  Aligned_cols=87  Identities=14%  Similarity=0.110  Sum_probs=76.7

Q ss_pred             hcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCC-EEecCCCCCCCCCchhhhcCCccce
Q 046642           13 LSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIE-SMDLSSNMLSGNIPQQLSELTSLEF   91 (207)
Q Consensus        13 ~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~-~L~ls~N~l~~~~p~~~~~l~~L~~   91 (207)
                      .+++|+.|+|++|.++...+..|.++++|+.++++.| ++...+..|.++.+|+ .+++.+ .++...+..|.++++|+.
T Consensus       224 ~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~  301 (329)
T 3sb4_A          224 YMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRY  301 (329)
T ss_dssp             HCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEE
T ss_pred             hcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCE
Confidence            4789999999999999666778999999999999998 7756678899999999 999998 777566688999999999


Q ss_pred             ecCCCCcCcC
Q 046642           92 FDVSDNLLTG  101 (207)
Q Consensus        92 l~l~~N~l~~  101 (207)
                      +++++|.++.
T Consensus       302 l~l~~n~i~~  311 (329)
T 3sb4_A          302 VLATGDKITT  311 (329)
T ss_dssp             EEECSSCCCE
T ss_pred             EEeCCCccCc
Confidence            9999998883

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.43  E-value=3.1e-08  Score=81.41  Aligned_cols=111  Identities=19%  Similarity=0.133  Sum_probs=78.1

Q ss_pred             hhhcccccEEEccCCCCCCCCchhc-----cCCCCCCEEECcCCcCCC----CCcccCCCCCCCCEEecCCCCCCCC---
Q 046642           11 EKLSNLITAIILSNNSFVGEIPTSI-----ANLKGLRNLDLSNNNLQG----RIPLSLSNLTAIESMDLSSNMLSGN---   78 (207)
Q Consensus        11 ~~~l~~L~~L~Ls~n~i~~~~p~~~-----~~l~~L~~L~Ls~n~l~~----~~p~~~~~l~~L~~L~ls~N~l~~~---   78 (207)
                      ...+.+|+.|+|++|.|+......+     ...++|+.|+|++|.++.    .++..+...++|++|+|++|.++..   
T Consensus       122 ~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~  201 (372)
T 3un9_A          122 LPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLE  201 (372)
T ss_dssp             HHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHH
T ss_pred             HHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHH
Confidence            3456789999999999975444443     246789999999999863    2344556788999999999998742   


Q ss_pred             -CchhhhcCCccceecCCCCcCcCCCC----C-CCCCCCCCcccccCCC
Q 046642           79 -IPQQLSELTSLEFFDVSDNLLTGPIP----R-GKQFDTFGKSSFDGNP  121 (207)
Q Consensus        79 -~p~~~~~l~~L~~l~l~~N~l~~~~p----~-~~~~~~l~~~~~~~n~  121 (207)
                       ++..+...++|+.|++++|.++..-.    . ......+..+++++|+
T Consensus       202 ~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~  250 (372)
T 3un9_A          202 LLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNE  250 (372)
T ss_dssp             HHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSS
T ss_pred             HHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCC
Confidence             24456677889999999998874211    0 0123467777888875

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.35  E-value=6.3e-08  Score=79.57  Aligned_cols=107  Identities=16%  Similarity=0.102  Sum_probs=70.7

Q ss_pred             ccccEEEccCCCCCCCCchhc-cCCCCCCEEECcCCcCCCCCcccC-----CCCCCCCEEecCCCCCCC----CCchhhh
Q 046642           15 NLITAIILSNNSFVGEIPTSI-ANLKGLRNLDLSNNNLQGRIPLSL-----SNLTAIESMDLSSNMLSG----NIPQQLS   84 (207)
Q Consensus        15 ~~L~~L~Ls~n~i~~~~p~~~-~~l~~L~~L~Ls~n~l~~~~p~~~-----~~l~~L~~L~ls~N~l~~----~~p~~~~   84 (207)
                      .+|+.|+|++|.|+......+ ..+++|+.|+|++|.++......+     ...++|+.|++++|.++.    .++..+.
T Consensus       101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~  180 (372)
T 3un9_A          101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA  180 (372)
T ss_dssp             SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred             CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence            578899999998874333333 346788999999998874333333     345789999999998863    2334456


Q ss_pred             cCCccceecCCCCcCcCCC----CC-CCCCCCCCcccccCCC
Q 046642           85 ELTSLEFFDVSDNLLTGPI----PR-GKQFDTFGKSSFDGNP  121 (207)
Q Consensus        85 ~l~~L~~l~l~~N~l~~~~----p~-~~~~~~l~~~~~~~n~  121 (207)
                      ..++|++|++++|.++..-    +. ......+..+++++|.
T Consensus       181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~  222 (372)
T 3un9_A          181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNG  222 (372)
T ss_dssp             TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSC
T ss_pred             cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCC
Confidence            7888999999999886311    10 1122356677777764

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.15  E-value=4e-07  Score=67.38  Aligned_cols=89  Identities=15%  Similarity=0.182  Sum_probs=66.4

Q ss_pred             hcccccEEEccCC-CCCCC----CchhccCCCCCCEEECcCCcCCCC----CcccCCCCCCCCEEecCCCCCCCC----C
Q 046642           13 LSNLITAIILSNN-SFVGE----IPTSIANLKGLRNLDLSNNNLQGR----IPLSLSNLTAIESMDLSSNMLSGN----I   79 (207)
Q Consensus        13 ~l~~L~~L~Ls~n-~i~~~----~p~~~~~l~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~ls~N~l~~~----~   79 (207)
                      ..+.|+.|+|++| .|...    +...+...++|+.|+|++|.+...    +...+...++|+.|+|++|.|+..    +
T Consensus        34 ~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l  113 (185)
T 1io0_A           34 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILAL  113 (185)
T ss_dssp             TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHH
T ss_pred             cCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHH
Confidence            3567999999999 88632    344566678899999999998632    233455567899999999998742    3


Q ss_pred             chhhhcCCccceecC--CCCcCcC
Q 046642           80 PQQLSELTSLEFFDV--SDNLLTG  101 (207)
Q Consensus        80 p~~~~~l~~L~~l~l--~~N~l~~  101 (207)
                      ...+...++|+.|++  ++|.++.
T Consensus       114 ~~~L~~n~~L~~L~L~~~~N~i~~  137 (185)
T 1io0_A          114 VEALQSNTSLIELRIDNQSQPLGN  137 (185)
T ss_dssp             HHGGGGCSSCCEEECCCCSSCCCH
T ss_pred             HHHHHhCCCceEEEecCCCCCCCH
Confidence            445667788999999  8888863

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=98.12  E-value=2.7e-07  Score=79.55  Aligned_cols=86  Identities=10%  Similarity=0.016  Sum_probs=37.2

Q ss_pred             cccccEEEcc----CCCCCCC-----CchhccCCCCCCEEECcCCc--CCCCCcccCC-CCCCCCEEecCCCCCCC-CCc
Q 046642           14 SNLITAIILS----NNSFVGE-----IPTSIANLKGLRNLDLSNNN--LQGRIPLSLS-NLTAIESMDLSSNMLSG-NIP   80 (207)
Q Consensus        14 l~~L~~L~Ls----~n~i~~~-----~p~~~~~l~~L~~L~Ls~n~--l~~~~p~~~~-~l~~L~~L~ls~N~l~~-~~p   80 (207)
                      +++|+.|+++    .|.+++.     ++..+.++++|+.|+++.|.  +++..+..+. .+++|+.|++++|.+++ .++
T Consensus       402 ~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~  481 (592)
T 3ogk_B          402 LKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLM  481 (592)
T ss_dssp             CCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHH
T ss_pred             CCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHH
Confidence            5556666664    4555532     22223445555555554322  3322222221 24445555555555442 122


Q ss_pred             hhhhcCCccceecCCCCcC
Q 046642           81 QQLSELTSLEFFDVSDNLL   99 (207)
Q Consensus        81 ~~~~~l~~L~~l~l~~N~l   99 (207)
                      ..+..+++|+.|++++|.+
T Consensus       482 ~~~~~~~~L~~L~l~~n~l  500 (592)
T 3ogk_B          482 EFSRGCPNLQKLEMRGCCF  500 (592)
T ss_dssp             HHHTCCTTCCEEEEESCCC
T ss_pred             HHHhcCcccCeeeccCCCC
Confidence            2334444555555555544

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.12  E-value=7.6e-07  Score=65.89  Aligned_cols=67  Identities=16%  Similarity=0.218  Sum_probs=38.6

Q ss_pred             hccCCCCCCEEECcCC-cCCCC----CcccCCCCCCCCEEecCCCCCCCC----CchhhhcCCccceecCCCCcCc
Q 046642           34 SIANLKGLRNLDLSNN-NLQGR----IPLSLSNLTAIESMDLSSNMLSGN----IPQQLSELTSLEFFDVSDNLLT  100 (207)
Q Consensus        34 ~~~~l~~L~~L~Ls~n-~l~~~----~p~~~~~l~~L~~L~ls~N~l~~~----~p~~~~~l~~L~~l~l~~N~l~  100 (207)
                      .+...++|+.|+|++| .+...    +...+...++|+.|+|++|.+...    +...+...++|+.|++++|.++
T Consensus        31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~  106 (185)
T 1io0_A           31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS  106 (185)
T ss_dssp             HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred             HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCC
Confidence            3445666777777776 66421    233445556677777777766521    1223444566777777777665

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.01  E-value=5.6e-06  Score=66.43  Aligned_cols=82  Identities=9%  Similarity=-0.007  Sum_probs=71.6

Q ss_pred             hhhcccccEEEccCCCCCCCCchhccCCCCCC-EEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCcc
Q 046642           11 EKLSNLITAIILSNNSFVGEIPTSIANLKGLR-NLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSL   89 (207)
Q Consensus        11 ~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~-~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L   89 (207)
                      +..+.+|+.|++.+| ++..-+..|.++++|+ .+++.. .++...+..|.++++|+.+++++|.++...+..|.++++|
T Consensus       246 F~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L  323 (329)
T 3sb4_A          246 FAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPS  323 (329)
T ss_dssp             TTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCC
T ss_pred             hhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcch
Confidence            556889999999998 7767777899999999 999999 7775667899999999999999999996666789999999


Q ss_pred             ceecC
Q 046642           90 EFFDV   94 (207)
Q Consensus        90 ~~l~l   94 (207)
                      +.++.
T Consensus       324 ~~ly~  328 (329)
T 3sb4_A          324 KLIYK  328 (329)
T ss_dssp             CEEEC
T ss_pred             hhhcc
Confidence            98764

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.95  E-value=1.1e-06  Score=64.47  Aligned_cols=83  Identities=17%  Similarity=0.167  Sum_probs=57.1

Q ss_pred             cccEEEccCCCCCCCCchhccCCCCCCEEECcCCc-CCCCCcccCCCC----CCCCEEecCCCC-CCCCCchhhhcCCcc
Q 046642           16 LITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNN-LQGRIPLSLSNL----TAIESMDLSSNM-LSGNIPQQLSELTSL   89 (207)
Q Consensus        16 ~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~-l~~~~p~~~~~l----~~L~~L~ls~N~-l~~~~p~~~~~l~~L   89 (207)
                      .|+.||++++.|+..--..+..+++|+.|+|++|. ++..--..+..+    ++|+.|+++++. ++..--..+..+++|
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L  141 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL  141 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence            47888888888876555567788888888888885 553222334443    368888888874 663222346677888


Q ss_pred             ceecCCCCc
Q 046642           90 EFFDVSDNL   98 (207)
Q Consensus        90 ~~l~l~~N~   98 (207)
                      +.|+++++.
T Consensus       142 ~~L~L~~c~  150 (176)
T 3e4g_A          142 KYLFLSDLP  150 (176)
T ss_dssp             CEEEEESCT
T ss_pred             CEEECCCCC
Confidence            888888764

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=97.88  E-value=9.3e-07  Score=76.15  Aligned_cols=110  Identities=15%  Similarity=0.100  Sum_probs=64.9

Q ss_pred             hhcccccEEEcc--C----CCCCCCC-----chhccCCCCCCEEECcCCcCCCCCcccCCC-CCCCCEEecCCCCCCCCC
Q 046642           12 KLSNLITAIILS--N----NSFVGEI-----PTSIANLKGLRNLDLSNNNLQGRIPLSLSN-LTAIESMDLSSNMLSGNI   79 (207)
Q Consensus        12 ~~l~~L~~L~Ls--~----n~i~~~~-----p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~-l~~L~~L~ls~N~l~~~~   79 (207)
                      ..+++|+.|+++  +    |.++...     +..+..+++|+.|++++ .++...+..+.. +++|+.|++++|.+++..
T Consensus       394 ~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~  472 (594)
T 2p1m_B          394 RNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLG  472 (594)
T ss_dssp             HHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHH
T ss_pred             hhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHH
Confidence            346778888887  4    5555221     12255667788888866 554333334433 677888888887776443


Q ss_pred             chhh-hcCCccceecCCCCcCcCCCCC--CCCCCCCCcccccCCCC
Q 046642           80 PQQL-SELTSLEFFDVSDNLLTGPIPR--GKQFDTFGKSSFDGNPG  122 (207)
Q Consensus        80 p~~~-~~l~~L~~l~l~~N~l~~~~p~--~~~~~~l~~~~~~~n~~  122 (207)
                      +..+ ..+++|+.|++++|.+++....  ...++.+..+++.+|+.
T Consensus       473 ~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~  518 (594)
T 2p1m_B          473 MHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV  518 (594)
T ss_dssp             HHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred             HHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence            3333 5577788888888777432211  12245566666666543

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=97.85  E-value=4.3e-06  Score=71.99  Aligned_cols=83  Identities=12%  Similarity=0.139  Sum_probs=55.5

Q ss_pred             hcccccEEEccCCCCCCC----CchhccCCCCCCEEECcCCcCCC----CCcccCCCCCCCCEEecCCCCCCCCCchhhh
Q 046642           13 LSNLITAIILSNNSFVGE----IPTSIANLKGLRNLDLSNNNLQG----RIPLSLSNLTAIESMDLSSNMLSGNIPQQLS   84 (207)
Q Consensus        13 ~l~~L~~L~Ls~n~i~~~----~p~~~~~l~~L~~L~Ls~n~l~~----~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~   84 (207)
                      .+++|++|+|++|.+++.    ++..+..+++|+.|++++|.+++    .++..+..+++|+.|++++|.+.+ +|..+.
T Consensus       162 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~  240 (592)
T 3ogk_B          162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFK  240 (592)
T ss_dssp             HCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHH
T ss_pred             hCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHh
Confidence            457788888888877654    33344567778888888887762    233344567778888888777763 556666


Q ss_pred             cCCccceecCCC
Q 046642           85 ELTSLEFFDVSD   96 (207)
Q Consensus        85 ~l~~L~~l~l~~   96 (207)
                      .+++|+.|+++.
T Consensus       241 ~~~~L~~L~l~~  252 (592)
T 3ogk_B          241 AAANLEEFCGGS  252 (592)
T ss_dssp             HCTTCCEEEECB
T ss_pred             hhhHHHhhcccc
Confidence            666666666653

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=97.73  E-value=4.3e-06  Score=71.99  Aligned_cols=86  Identities=19%  Similarity=0.162  Sum_probs=44.8

Q ss_pred             hcccccEEEccCCCCCCCCchhcc-CCCCCCEEECcCC-cCCCC-CcccCCCCCCCCEEecCCCCCCCCCchhhh----c
Q 046642           13 LSNLITAIILSNNSFVGEIPTSIA-NLKGLRNLDLSNN-NLQGR-IPLSLSNLTAIESMDLSSNMLSGNIPQQLS----E   85 (207)
Q Consensus        13 ~l~~L~~L~Ls~n~i~~~~p~~~~-~l~~L~~L~Ls~n-~l~~~-~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~----~   85 (207)
                      .+++|+.|+|++|.+++..+..+. .+++|+.|++++| .++.. ++..+..+++|++|++++|.+++..+..+.    .
T Consensus       103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~  182 (594)
T 2p1m_B          103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDT  182 (594)
T ss_dssp             HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTT
T ss_pred             hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhc
Confidence            455666677776666654444443 4566666666665 33211 223333455666666666655543333332    3


Q ss_pred             CCccceecCCCCc
Q 046642           86 LTSLEFFDVSDNL   98 (207)
Q Consensus        86 l~~L~~l~l~~N~   98 (207)
                      +++|+.|++++|.
T Consensus       183 ~~~L~~L~l~~~~  195 (594)
T 2p1m_B          183 YTSLVSLNISCLA  195 (594)
T ss_dssp             CCCCCEEECTTCC
T ss_pred             CCcCcEEEecccC
Confidence            3455555555554

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.54  E-value=6.8e-05  Score=52.14  Aligned_cols=58  Identities=24%  Similarity=0.279  Sum_probs=46.4

Q ss_pred             cEEEccCCCCC-CCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCC
Q 046642           18 TAIILSNNSFV-GEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSG   77 (207)
Q Consensus        18 ~~L~Ls~n~i~-~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~   77 (207)
                      +.++-+++.++ ..+|..+  .++|+.|+|++|+|+...+..|..+++|+.|+|++|.+.-
T Consensus        11 ~~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~C   69 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRC   69 (130)
T ss_dssp             TEEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBC
T ss_pred             CEEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeec
Confidence            46888999886 3566543  2469999999999996666778889999999999998863

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.51  E-value=0.00023  Score=49.43  Aligned_cols=58  Identities=19%  Similarity=0.231  Sum_probs=46.0

Q ss_pred             CEEECcCCcCC-CCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCccceecCCCCcCcC
Q 046642           42 RNLDLSNNNLQ-GRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEFFDVSDNLLTG  101 (207)
Q Consensus        42 ~~L~Ls~n~l~-~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~  101 (207)
                      ..++.+++.++ ..+|..+  ..+|+.|+|++|.|+...++.|..+++|+.|+|++|.+..
T Consensus        11 ~~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~C   69 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRC   69 (130)
T ss_dssp             TEEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBC
T ss_pred             CEEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeec
Confidence            47888888886 3566443  2478999999999996666778889999999999998875

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=97.38  E-value=2.3e-05  Score=63.98  Aligned_cols=108  Identities=12%  Similarity=0.132  Sum_probs=63.2

Q ss_pred             cccccEEEccCCCCCCCCchhcc--CCCCCCEEECcC--CcCCCC-----CcccC--CCCCCCCEEecCCCCCCCCCchh
Q 046642           14 SNLITAIILSNNSFVGEIPTSIA--NLKGLRNLDLSN--NNLQGR-----IPLSL--SNLTAIESMDLSSNMLSGNIPQQ   82 (207)
Q Consensus        14 l~~L~~L~Ls~n~i~~~~p~~~~--~l~~L~~L~Ls~--n~l~~~-----~p~~~--~~l~~L~~L~ls~N~l~~~~p~~   82 (207)
                      .++|+.|++..+.++......+.  .+++|+.|+|+.  |...+.     +...+  ..+++|+.|++++|.+....+..
T Consensus       192 ~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~  271 (362)
T 2ra8_A          192 RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEM  271 (362)
T ss_dssp             CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHH
T ss_pred             CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHH
Confidence            56788888888777643333343  678888888753  221111     11122  24678888888888776433333


Q ss_pred             hh---cCCccceecCCCCcCcCC----CCCC-CCCCCCCcccccCCC
Q 046642           83 LS---ELTSLEFFDVSDNLLTGP----IPRG-KQFDTFGKSSFDGNP  121 (207)
Q Consensus        83 ~~---~l~~L~~l~l~~N~l~~~----~p~~-~~~~~l~~~~~~~n~  121 (207)
                      +.   .+++|+.|+++.|.+++.    ++.. ..+..+..+++..|.
T Consensus       272 la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~  318 (362)
T 2ra8_A          272 FLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNY  318 (362)
T ss_dssp             HHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred             HHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCc
Confidence            33   367788888888877642    2222 234556666666553

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=97.38  E-value=1.8e-05  Score=64.68  Aligned_cols=106  Identities=10%  Similarity=0.189  Sum_probs=66.1

Q ss_pred             hhcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccC--CCCCCCCEEecCC--CCCCCC-----Cchh
Q 046642           12 KLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSL--SNLTAIESMDLSS--NMLSGN-----IPQQ   82 (207)
Q Consensus        12 ~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~--~~l~~L~~L~ls~--N~l~~~-----~p~~   82 (207)
                      .-+++|+.|++++|.-. .++. +. +++|+.|++..+.+.......+  ..+++|+.|+|+.  |...+.     +...
T Consensus       169 ~~~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~  245 (362)
T 2ra8_A          169 DAMPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPL  245 (362)
T ss_dssp             HTCTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGG
T ss_pred             hcCCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHH
Confidence            44678999999988411 2333 33 7899999999888763322233  3688999999853  222111     1112


Q ss_pred             h--hcCCccceecCCCCcCcCCCC----CCCCCCCCCcccccCC
Q 046642           83 L--SELTSLEFFDVSDNLLTGPIP----RGKQFDTFGKSSFDGN  120 (207)
Q Consensus        83 ~--~~l~~L~~l~l~~N~l~~~~p----~~~~~~~l~~~~~~~n  120 (207)
                      +  ..+++|+.|++.+|.+....+    ....++.+..++++.|
T Consensus       246 l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n  289 (362)
T 2ra8_A          246 FSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAG  289 (362)
T ss_dssp             SCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSS
T ss_pred             HhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCC
Confidence            2  247899999999988763221    1123556777777665

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=97.31  E-value=0.0004  Score=57.42  Aligned_cols=101  Identities=12%  Similarity=0.109  Sum_probs=73.5

Q ss_pred             ccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCC-----CCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCcc
Q 046642           15 NLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQ-----GRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSL   89 (207)
Q Consensus        15 ~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~-----~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L   89 (207)
                      .+|+.+.+ .+.++..-+..|.++++|+.+++.+|.+.     ...+..|.++++|+.+++.+ .++..-...|.++.+|
T Consensus       248 ~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L  325 (401)
T 4fdw_A          248 SGITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKV  325 (401)
T ss_dssp             CCCSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSC
T ss_pred             CCccEEEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCc
Confidence            57888888 45566566778899999999999888764     34567889999999999994 4774555678889999


Q ss_pred             ceecCCCCcCcCCCCCC--CCCCCCCcccccCC
Q 046642           90 EFFDVSDNLLTGPIPRG--KQFDTFGKSSFDGN  120 (207)
Q Consensus        90 ~~l~l~~N~l~~~~p~~--~~~~~l~~~~~~~n  120 (207)
                      +.+++..| ++ .++..  ... .+..+.+.+|
T Consensus       326 ~~l~lp~~-l~-~I~~~aF~~~-~L~~l~l~~n  355 (401)
T 4fdw_A          326 TQLTIPAN-VT-QINFSAFNNT-GIKEVKVEGT  355 (401)
T ss_dssp             CEEEECTT-CC-EECTTSSSSS-CCCEEEECCS
T ss_pred             cEEEECcc-cc-EEcHHhCCCC-CCCEEEEcCC
Confidence            99999665 44 23322  222 5566666665

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=97.20  E-value=0.00072  Score=55.87  Aligned_cols=104  Identities=10%  Similarity=0.119  Sum_probs=73.9

Q ss_pred             hhhcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCC-----CCCchhhhc
Q 046642           11 EKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLS-----GNIPQQLSE   85 (207)
Q Consensus        11 ~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~-----~~~p~~~~~   85 (207)
                      +..+.+|+.+++..| ++..-...|.+ .+|+.+.+ .+.++..-+..|.++++|+.+++.+|.+.     ...+..|..
T Consensus       222 F~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~  298 (401)
T 4fdw_A          222 FLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEG  298 (401)
T ss_dssp             TTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTT
T ss_pred             hhCCCCCCEEecCCC-ccCcccccccc-CCccEEEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhC
Confidence            456778999999875 56455666777 78999999 45566466788999999999999988765     344567899


Q ss_pred             CCccceecCCCCcCcCCCCCCC--CCCCCCcccccC
Q 046642           86 LTSLEFFDVSDNLLTGPIPRGK--QFDTFGKSSFDG  119 (207)
Q Consensus        86 l~~L~~l~l~~N~l~~~~p~~~--~~~~l~~~~~~~  119 (207)
                      +++|+.+++.++ ++ .++...  ....+..+.+..
T Consensus       299 c~~L~~l~l~~~-i~-~I~~~aF~~c~~L~~l~lp~  332 (401)
T 4fdw_A          299 CPKLARFEIPES-IR-ILGQGLLGGNRKVTQLTIPA  332 (401)
T ss_dssp             CTTCCEECCCTT-CC-EECTTTTTTCCSCCEEEECT
T ss_pred             CccCCeEEeCCc-eE-EEhhhhhcCCCCccEEEECc
Confidence            999999999844 55 344321  234455555533

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=96.57  E-value=0.00034  Score=51.18  Aligned_cols=82  Identities=13%  Similarity=0.119  Sum_probs=55.2

Q ss_pred             CCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCC-CCCCCchhhhcC----CccceecCCCCc-CcCC-CCCCCCCCC
Q 046642           39 KGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNM-LSGNIPQQLSEL----TSLEFFDVSDNL-LTGP-IPRGKQFDT  111 (207)
Q Consensus        39 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~-l~~~~p~~~~~l----~~L~~l~l~~N~-l~~~-~p~~~~~~~  111 (207)
                      ..|+.||++++.++..--..+..+++|+.|+|+++. ++..--..+..+    ++|+.|+++++. ++.. +.....++.
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~  140 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN  140 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence            469999999999875545667899999999999995 653222235543    379999999974 5521 111123455


Q ss_pred             CCcccccCC
Q 046642          112 FGKSSFDGN  120 (207)
Q Consensus       112 l~~~~~~~n  120 (207)
                      +..+++.+-
T Consensus       141 L~~L~L~~c  149 (176)
T 3e4g_A          141 LKYLFLSDL  149 (176)
T ss_dssp             CCEEEEESC
T ss_pred             CCEEECCCC
Confidence            666666653

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=96.39  E-value=0.0012  Score=49.06  Aligned_cols=83  Identities=13%  Similarity=0.218  Sum_probs=46.7

Q ss_pred             ccccEEEccCC-CCCCC----CchhccCCCCCCEEECcCCcCCC----CCcccCCCCCCCCEEecCCCCCCCCC----ch
Q 046642           15 NLITAIILSNN-SFVGE----IPTSIANLKGLRNLDLSNNNLQG----RIPLSLSNLTAIESMDLSSNMLSGNI----PQ   81 (207)
Q Consensus        15 ~~L~~L~Ls~n-~i~~~----~p~~~~~l~~L~~L~Ls~n~l~~----~~p~~~~~l~~L~~L~ls~N~l~~~~----p~   81 (207)
                      +.|+.|+|++| .|...    +-..+..=+.|+.|+|++|.+..    .+-..+..=+.|+.|+|++|.|...-    -+
T Consensus        41 ~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~  120 (197)
T 1pgv_A           41 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLR  120 (197)
T ss_dssp             SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHH
T ss_pred             CCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHH
Confidence            35777777774 65421    22334444667777787777752    12223334466777777777776311    11


Q ss_pred             hhhcCCccceecCCCC
Q 046642           82 QLSELTSLEFFDVSDN   97 (207)
Q Consensus        82 ~~~~l~~L~~l~l~~N   97 (207)
                      .+..-..|+.|++++|
T Consensus       121 aL~~N~tL~~L~L~n~  136 (197)
T 1pgv_A          121 STLVTQSIVEFKADNQ  136 (197)
T ss_dssp             HTTTTCCCSEEECCCC
T ss_pred             HHhhCCceeEEECCCC
Confidence            2334456777777654

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=96.08  E-value=0.006  Score=49.90  Aligned_cols=62  Identities=15%  Similarity=0.091  Sum_probs=31.5

Q ss_pred             hccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCccceecCCCC
Q 046642           34 SIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEFFDVSDN   97 (207)
Q Consensus        34 ~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l~l~~N   97 (207)
                      .|..+.+|+.+.+..+ ++..-...|.++.+|+.+++..+ ++..-...|.++.+|+.+++..|
T Consensus       292 ~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~  353 (394)
T 4fs7_A          292 TFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS  353 (394)
T ss_dssp             TTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT
T ss_pred             cccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc
Confidence            3445555666655443 33233445555566666666433 43233345555566666655544

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=96.02  E-value=0.017  Score=47.12  Aligned_cols=104  Identities=11%  Similarity=0.261  Sum_probs=60.7

Q ss_pred             hhcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCccce
Q 046642           12 KLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEF   91 (207)
Q Consensus        12 ~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~   91 (207)
                      .....|+.+.+..+..+ .-...|.+++.|+.+.+.. .++......|.++.+|+.+++..+ ++..-...|.++.+|+.
T Consensus       262 ~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~  338 (394)
T 4gt6_A          262 DSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLER  338 (394)
T ss_dssp             TTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCE
T ss_pred             eecccccEEecccccce-ecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCE
Confidence            44566777777655433 4455566777777777753 344344456777777777777654 44333456777777777


Q ss_pred             ecCCCCcCcCCCCCC--CCCCCCCcccccCC
Q 046642           92 FDVSDNLLTGPIPRG--KQFDTFGKSSFDGN  120 (207)
Q Consensus        92 l~l~~N~l~~~~p~~--~~~~~l~~~~~~~n  120 (207)
                      +.+..+ ++ .+...  .....|..+.+.++
T Consensus       339 i~ip~s-v~-~I~~~aF~~C~~L~~i~~~~~  367 (394)
T 4gt6_A          339 IAIPSS-VT-KIPESAFSNCTALNNIEYSGS  367 (394)
T ss_dssp             EEECTT-CC-BCCGGGGTTCTTCCEEEESSC
T ss_pred             EEECcc-cC-EEhHhHhhCCCCCCEEEECCc
Confidence            777544 33 33322  12344555555554

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=95.84  E-value=0.016  Score=46.94  Aligned_cols=83  Identities=11%  Similarity=0.117  Sum_probs=56.6

Q ss_pred             hcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCcccee
Q 046642           13 LSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEFF   92 (207)
Q Consensus        13 ~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l   92 (207)
                      ....|+.+.+..+ ++..-...|.+..+|+.+.+..+ +.......|..+.+|+.+.+.++.++..-...|.++.+|+.+
T Consensus       238 ~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i  315 (379)
T 4h09_A          238 GMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSV  315 (379)
T ss_dssp             TCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEE
T ss_pred             CCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEE
Confidence            4566777777655 44344556777778888887654 442444567778888888888777774445677788888888


Q ss_pred             cCCCC
Q 046642           93 DVSDN   97 (207)
Q Consensus        93 ~l~~N   97 (207)
                      ++..+
T Consensus       316 ~lp~~  320 (379)
T 4h09_A          316 TLPTA  320 (379)
T ss_dssp             ECCTT
T ss_pred             EcCcc
Confidence            87654

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=95.77  E-value=0.0019  Score=48.07  Aligned_cols=86  Identities=19%  Similarity=0.127  Sum_probs=59.0

Q ss_pred             cccccEEEccCCCCCCCC----chhccCCCCCCEEECcCCcCCCC----CcccCCCCCCCCEEecCCCCC---CC----C
Q 046642           14 SNLITAIILSNNSFVGEI----PTSIANLKGLRNLDLSNNNLQGR----IPLSLSNLTAIESMDLSSNML---SG----N   78 (207)
Q Consensus        14 l~~L~~L~Ls~n~i~~~~----p~~~~~l~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~ls~N~l---~~----~   78 (207)
                      -+.|+.|+|++|.|...-    ...+..=+.|+.|+|++|.|...    +-..+..-..|+.|+|++|..   ..    .
T Consensus        69 N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~  148 (197)
T 1pgv_A           69 SKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMD  148 (197)
T ss_dssp             CSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHH
T ss_pred             CCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHH
Confidence            356999999999997432    22333447899999999999732    223455567899999997643   21    1


Q ss_pred             CchhhhcCCccceecCCCCcC
Q 046642           79 IPQQLSELTSLEFFDVSDNLL   99 (207)
Q Consensus        79 ~p~~~~~l~~L~~l~l~~N~l   99 (207)
                      +-..+..-++|+.|+++.|.+
T Consensus       149 ia~aL~~N~tL~~L~l~~~~~  169 (197)
T 1pgv_A          149 MMMAIEENESLLRVGISFASM  169 (197)
T ss_dssp             HHHHHHHCSSCCEEECCCCCH
T ss_pred             HHHHHHhCCCcCeEeccCCCc
Confidence            223455667888898887654

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=95.41  E-value=0.05  Score=44.32  Aligned_cols=80  Identities=14%  Similarity=0.201  Sum_probs=32.9

Q ss_pred             ccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCccceecC
Q 046642           15 NLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEFFDV   94 (207)
Q Consensus        15 ~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l~l   94 (207)
                      .+|+.+.+. +.++..-...|.++.+|+.+++..+ ++..-...|.++.+|+.+.+..+ ++..-...|.++.+|+.+++
T Consensus       288 ~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~  364 (394)
T 4gt6_A          288 PALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEY  364 (394)
T ss_dssp             TTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEE
T ss_pred             cccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEE
Confidence            344444443 2233223333444444555544432 22222334444445555444332 33222334444445554444


Q ss_pred             CCC
Q 046642           95 SDN   97 (207)
Q Consensus        95 ~~N   97 (207)
                      .++
T Consensus       365 ~~~  367 (394)
T 4gt6_A          365 SGS  367 (394)
T ss_dssp             SSC
T ss_pred             CCc
Confidence            443

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=94.45  E-value=0.07  Score=43.05  Aligned_cols=85  Identities=12%  Similarity=0.142  Sum_probs=49.2

Q ss_pred             hcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCcccee
Q 046642           13 LSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEFF   92 (207)
Q Consensus        13 ~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l   92 (207)
                      ...+++.+.+..+ ++..-...|.+...|+.+.+..+ ++..-...|.+..+|+.+.+..+ ++......|..+.+|+.+
T Consensus       215 ~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i  291 (379)
T 4h09_A          215 YGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKV  291 (379)
T ss_dssp             TCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEE
T ss_pred             cccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccc
Confidence            4455666655443 33244445666677777777655 33344456666777777777544 332333456667777777


Q ss_pred             cCCCCcCc
Q 046642           93 DVSDNLLT  100 (207)
Q Consensus        93 ~l~~N~l~  100 (207)
                      .+.++.++
T Consensus       292 ~l~~~~i~  299 (379)
T 4h09_A          292 VMDNSAIE  299 (379)
T ss_dssp             EECCTTCC
T ss_pred             cccccccc
Confidence            77666555

>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}

Probab=94.34  E-value=0.016  Score=31.88  Aligned_cols=21  Identities=5%  Similarity=0.173  Sum_probs=11.4

Q ss_pred             eeehhhhHHHHHHHHHHHhhc
Q 046642          157 VVIGYASGTIIGVILGHIFST  177 (207)
Q Consensus       157 ~~i~~~~~~~~~~~~~~~~~~  177 (207)
                      ++.++++|+++++++++.++.
T Consensus        13 IA~gVVgGv~~~~ii~~~~~~   33 (44)
T 2ks1_B           13 IATGMVGALLLLLVVALGIGL   33 (44)
T ss_dssp             STHHHHHHHHHHHHHHHHHHH
T ss_pred             EEeehhHHHHHHHHHHHHHHH
Confidence            555666655555555554443

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=94.14  E-value=0.034  Score=45.32  Aligned_cols=84  Identities=11%  Similarity=0.046  Sum_probs=66.6

Q ss_pred             hhhcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCccc
Q 046642           11 EKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLE   90 (207)
Q Consensus        11 ~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~   90 (207)
                      +....+|+.+.+..+ ++..-...|.++++|+.+++..+ ++..-..+|.++.+|+.+++..| ++..-...|.++.+|+
T Consensus       293 F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~  369 (394)
T 4fs7_A          293 FYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLK  369 (394)
T ss_dssp             TTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCC
T ss_pred             ccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCC
Confidence            446778999998765 66455677899999999999755 66455678999999999999877 6645556899999999


Q ss_pred             eecCCCC
Q 046642           91 FFDVSDN   97 (207)
Q Consensus        91 ~l~l~~N   97 (207)
                      .+++..+
T Consensus       370 ~i~lp~~  376 (394)
T 4fs7_A          370 KVELPKR  376 (394)
T ss_dssp             EEEEEGG
T ss_pred             EEEECCC
Confidence            9988654

>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}

Probab=92.66  E-value=0.017  Score=31.73  Aligned_cols=21  Identities=33%  Similarity=0.553  Sum_probs=10.8

Q ss_pred             eeehhhhHHHHHHHHHHHhhc
Q 046642          157 VVIGYASGTIIGVILGHIFST  177 (207)
Q Consensus       157 ~~i~~~~~~~~~~~~~~~~~~  177 (207)
                      ++.+++.|+++++++++.++.
T Consensus        12 IA~gVVgGv~~v~ii~~~~~~   32 (44)
T 2l2t_A           12 IAAGVIGGLFILVIVGLTFAV   32 (44)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEeehHHHHHHHHHHHHHHH
Confidence            555555555555555544443

>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A

Probab=88.96  E-value=0.086  Score=28.84  Aligned_cols=17  Identities=29%  Similarity=0.593  Sum_probs=7.3

Q ss_pred             hhHHHHHHHHHHHhhcc
Q 046642          162 ASGTIIGVILGHIFSTR  178 (207)
Q Consensus       162 ~~~~~~~~~~~~~~~~~  178 (207)
                      ++|+++++++++.++.|
T Consensus        18 vVGvll~vi~~l~~~~~   34 (44)
T 2jwa_A           18 VVGILLVVVLGVVFGIL   34 (44)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhh
Confidence            33344444444444433

>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A

Probab=83.76  E-value=0.35  Score=25.54  Aligned_cols=6  Identities=17%  Similarity=0.063  Sum_probs=2.2

Q ss_pred             hhhhHH
Q 046642          160 GYASGT  165 (207)
Q Consensus       160 ~~~~~~  165 (207)
                      |+++++
T Consensus        15 GiVvG~   20 (38)
T 2k1k_A           15 AVIFGL   20 (38)
T ss_dssp             HHHHHH
T ss_pred             eeehHH
Confidence            333333

>2k9y_A Ephrin type-A receptor 2; receptor tyrosine kinase, membrane protein, dimeric transmembrane domain, ephrin receptor, ATP-binding, glycoprotein; NMR {Homo sapiens}

Probab=83.14  E-value=0.36  Score=25.79  Aligned_cols=13  Identities=31%  Similarity=0.483  Sum_probs=6.2

Q ss_pred             eeehhhhHHHHHH
Q 046642          157 VVIGYASGTIIGV  169 (207)
Q Consensus       157 ~~i~~~~~~~~~~  169 (207)
                      +++++++|+++.+
T Consensus        15 I~~~vv~Gv~ll~   27 (41)
T 2k9y_A           15 VIGGVAVGVVLLL   27 (41)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             EEeehhHHHHHHH
Confidence            4444455554444

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	207
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-19
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-05
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-04
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-13
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-10
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	5e-09
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	9e-06
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	6e-05
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-04
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	0.003
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-08
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	4e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	4e-05
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-08
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-07
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	4e-05
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	0.002
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	0.002
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-07
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	8e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	4e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.003
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	6e-07
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	2e-06
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	3e-06
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.001
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.003
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	7e-06
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	9e-05
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	1e-04
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	3e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	8e-06
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	3e-05
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	9e-04
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	9e-06
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	3e-04
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	1e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	2e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	5e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	5e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.001
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	3e-05
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	2e-04
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	9e-05
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	1e-04
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	9e-04
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	4e-04
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	0.002
d1m9la_	198	c.10.3.1 (A:) Outer arm dynein light chain 1 {Gree	0.002

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 82.5 bits (202), Expect = 2e-19
 Identities = 25/65 (38%), Positives = 35/65 (53%)

Query: 66  ESMDLSSNMLSGNIPQQLSELTSLEFFDVSDNLLTGPIPRGKQFDTFGKSSFDGNPGLCG 125
             +DL +N + G +PQ L++L  L   +VS N L G IP+G     F  S++  N  LCG
Sbjct: 247 NGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCG 306

Query: 126 GPLSK 130
            PL  
Sbjct: 307 SPLPA 311

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 42.4 bits (98), Expect = 1e-05
 Identities = 14/47 (29%), Positives = 21/47 (44%), Gaps = 2/47 (4%)

Query: 12  KLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLS 58
           +L  L  ++ +S N+  GEIP    NL+       +NN      PL 
Sbjct: 266 QLKFL-HSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNKCLCGSPLP 310

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 39.0 bits (89), Expect = 2e-04
 Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 3/77 (3%)

Query: 24  NNSFVGEIPTSIANLKGLRNLDLSNNNLQGR--IPLSLSNLTAIESMDLSSNM-LSGNIP 80
           N +++G +  +      + NLDLS  NL     IP SL+NL  +  + +     L G IP
Sbjct: 35  NRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIP 94

Query: 81  QQLSELTSLEFFDVSDN 97
             +++LT L +  ++  
Sbjct: 95  PAIAKLTQLHYLYITHT 111

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 66.6 bits (161), Expect = 1e-13
 Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 6/81 (7%)

Query: 17  ITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLS 76
           +T + L  N+     P  +++L  L+ L  +NN +      SL+NLT I  +    N +S
Sbjct: 309 LTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQIS 364

Query: 77  GNIPQQLSELTSLEFFDVSDN 97
              P  L+ LT +    ++D 
Sbjct: 365 DLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 57.7 bits (138), Expect = 1e-10
 Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 4/68 (5%)

Query: 37  NLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEFFDVSD 96
           NLK L  L L  NN+    P+S  +LT ++ +  ++N +S      L+ LT++ +     
Sbjct: 305 NLKNLTYLTLYFNNISDISPVS--SLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGH 360

Query: 97  NLLTGPIP 104
           N ++   P
Sbjct: 361 NQISDLTP 368

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 52.7 bits (125), Expect = 5e-09
 Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 5/63 (7%)

Query: 11  EKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDL 70
             L+ L   +  +NN       +S+ANL  +  L   +N +    P  L+NLT I  + L
Sbjct: 326 SSLTKL-QRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGL 380

Query: 71  SSN 73
           +  
Sbjct: 381 NDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 43.1 bits (100), Expect = 9e-06
 Identities = 15/85 (17%), Positives = 32/85 (37%), Gaps = 7/85 (8%)

Query: 11 EKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDL 70
            L+  +   +L   +    +  S  +L  +  L      ++  I   +  L  +  ++ 
Sbjct: 19 TALAEKM-KTVLGKTNVTDTV--SQTDLDQVTTLQADRLGIK-SID-GVEYLNNLTQINF 73

Query: 71 SSNMLSGNIPQQLSELTSLEFFDVS 95
          S+N L+   P  L  LT L    ++
Sbjct: 74 SNNQLTDITP--LKNLTKLVDILMN 96

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.8 bits (94), Expect = 6e-05
 Identities = 25/127 (19%), Positives = 50/127 (39%), Gaps = 24/127 (18%)

Query: 1   MSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLS 60
            +N+ +++    +   +  + L+ N        ++A+L  L +LDL+NN +    P  LS
Sbjct: 205 TNNQISDITPLGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP--LS 260

Query: 61  NLTAIESMDLSSNMLSGNIP--------------------QQLSELTSLEFFDVSDNLLT 100
            LT +  + L +N +S   P                      +S L +L +  +  N ++
Sbjct: 261 GLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNIS 320

Query: 101 GPIPRGK 107
              P   
Sbjct: 321 DISPVSS 327

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 39.6 bits (91), Expect = 1e-04
 Identities = 13/69 (18%), Positives = 26/69 (37%), Gaps = 4/69 (5%)

Query: 36  ANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEFFDVS 95
             L       L   N+     +S ++L  + ++      +  +I   +  L +L   + S
Sbjct: 19  TALAEKMKTVLGKTNVTD--TVSQTDLDQVTTLQADRLGIK-SI-DGVEYLNNLTQINFS 74

Query: 96  DNLLTGPIP 104
           +N LT   P
Sbjct: 75  NNQLTDITP 83

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 35.4 bits (80), Expect = 0.003
 Identities = 13/58 (22%), Positives = 24/58 (41%), Gaps = 4/58 (6%)

Query: 17 ITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNM 74
          +T +         +    +  L  L  ++ SNN L    P  L NLT +  + +++N 
Sbjct: 46 VTTLQADRLGI--KSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQ 99

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.3 bits (123), Expect = 1e-08
 Identities = 17/86 (19%), Positives = 31/86 (36%), Gaps = 9/86 (10%)

Query: 10  YEKLSNLITAIILSNNSFVGE----IPTSIANLKGLRNLDLSNNNLQGRIPLSLS----- 60
             +  +++  + L++          +  ++     LR LDLSNN L     L L      
Sbjct: 364 LGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQ 423

Query: 61  NLTAIESMDLSSNMLSGNIPQQLSEL 86
               +E + L     S  +  +L  L
Sbjct: 424 PGCLLEQLVLYDIYWSEEMEDRLQAL 449

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.8 bits (114), Expect = 1e-07
 Identities = 11/91 (12%), Positives = 29/91 (31%), Gaps = 10/91 (10%)

Query: 17 ITAIILSNNSFVGE-IPTSIANLKGLRNLDLSNNNLQGR----IPLSLSNLTAIESMDLS 71
          I ++ +             +  L+  + + L +  L       I  +L    A+  ++L 
Sbjct: 4  IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 72 SNMLSGNIPQQLSEL-----TSLEFFDVSDN 97
          SN L       + +        ++   + + 
Sbjct: 64 SNELGDVGVHCVLQGLQTPSCKIQKLSLQNC 94

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.3 bits (110), Expect = 4e-07
 Identities = 13/70 (18%), Positives = 24/70 (34%), Gaps = 5/70 (7%)

Query: 41  LRNLDLSNNNLQ-GRIPLSLSNLTAIESMDLSSNMLSG----NIPQQLSELTSLEFFDVS 95
           +++LD+    L   R    L  L   + + L    L+     +I   L    +L   ++ 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 96  DNLLTGPIPR 105
            N L      
Sbjct: 64  SNELGDVGVH 73

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.1 bits (94), Expect = 4e-05
 Identities = 10/76 (13%), Positives = 20/76 (26%), Gaps = 5/76 (6%)

Query: 11 EKLSNLITAIILSNNSF----VGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIE 66
            L      + L +         +I +++     L  L+L +N L       +       
Sbjct: 24 PLLQQC-QVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP 82

Query: 67 SMDLSSNMLSGNIPQQ 82
          S  +    L       
Sbjct: 83 SCKIQKLSLQNCCLTG 98

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 51.2 bits (121), Expect = 1e-08
 Identities = 18/100 (18%), Positives = 35/100 (35%), Gaps = 2/100 (2%)

Query: 30  EIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSL 89
           ++P  +        LDL NN +         NL  + ++ L +N +S   P   + L  L
Sbjct: 24  KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKL 81

Query: 90  EFFDVSDNLLTGPIPRGKQFDTFGKSSFDGNPGLCGGPLS 129
           E   +S N L     +  +     +   +    +     +
Sbjct: 82  ERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFN 121

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 48.5 bits (114), Expect = 1e-07
 Identities = 21/91 (23%), Positives = 31/91 (34%)

Query: 13  LSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSS 72
           L      + L NN           NLK L  L L NN +    P + + L  +E + LS 
Sbjct: 29  LPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK 88

Query: 73  NMLSGNIPQQLSELTSLEFFDVSDNLLTGPI 103
           N L     +    L  L   +     +   +
Sbjct: 89  NQLKELPEKMPKTLQELRVHENEITKVRKSV 119

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 41.2 bits (95), Expect = 4e-05
 Identities = 14/104 (13%), Positives = 32/104 (30%), Gaps = 3/104 (2%)

Query: 24  NNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQL 83
                G    +   +K L  + +++ N+     +      ++  + L  N ++      L
Sbjct: 135 PLKSSGIENGAFQGMKKLSYIRIADTNIT---TIPQGLPPSLTELHLDGNKITKVDAASL 191

Query: 84  SELTSLEFFDVSDNLLTGPIPRGKQFDTFGKSSFDGNPGLCGGP 127
             L +L    +S N ++             +     N  L   P
Sbjct: 192 KGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVP 235

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 36.2 bits (82), Expect = 0.002
 Identities = 21/128 (16%), Positives = 37/128 (28%), Gaps = 30/128 (23%)

Query: 2   SNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRI------ 55
               T +      +L T + L  N        S+  L  L  L LS N++          
Sbjct: 159 DTNITTIPQGLPPSL-TELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLAN 217

Query: 56  -----------------PLSLSNLTAIESMDLSSNMLSG------NIPQQLSELTSLEFF 92
                            P  L++   I+ + L +N +S         P   ++  S    
Sbjct: 218 TPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGV 277

Query: 93  DVSDNLLT 100
            +  N + 
Sbjct: 278 SLFSNPVQ 285

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 35.8 bits (81), Expect = 0.002
 Identities = 21/112 (18%), Positives = 34/112 (30%), Gaps = 4/112 (3%)

Query: 10  YEKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMD 69
           ++ +  L    I   N  +  IP  +     L  L L  N +      SL  L  +  + 
Sbjct: 146 FQGMKKLSYIRIADTN--ITTIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLG 201

Query: 70  LSSNMLSGNIPQQLSELTSLEFFDVSDNLLTGPIPRGKQFDTFGKSSFDGNP 121
           LS N +S      L+    L    +++N L                    N 
Sbjct: 202 LSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNN 253

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 47.9 bits (112), Expect = 2e-07
 Identities = 21/80 (26%), Positives = 30/80 (37%), Gaps = 8/80 (10%)

Query: 22  LSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQ 81
              N+   EI +       L  L++SNN L   +P     L   E +  S N L+  +P+
Sbjct: 267 YYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRL---ERLIASFNHLA-EVPE 321

Query: 82  QLSELTSLEFFDVSDNLLTG 101
               L  L    V  N L  
Sbjct: 322 LPQNLKQL---HVEYNPLRE 338

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 40.2 bits (92), Expect = 8e-05
 Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 8/63 (12%)

Query: 39  KGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEFFDVSDNL 98
           +    L+L+N  L   +P    +L   ES+  S N L+  +P       SL+   V +N 
Sbjct: 38  RQAHELELNNLGLS-SLPELPPHL---ESLVASCNSLT-ELP---ELPQSLKSLLVDNNN 89

Query: 99  LTG 101
           L  
Sbjct: 90  LKA 92

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 38.3 bits (87), Expect = 4e-04
 Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 8/63 (12%)

Query: 2   SNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQG--RIPLSL 59
           +NK  EL       L   +I S N    E+P    NLK    L +  N L+    IP S+
Sbjct: 293 NNKLIELPAL-PPRL-ERLIASFNHL-AEVPELPQNLK---QLHVEYNPLREFPDIPESV 346

Query: 60  SNL 62
            +L
Sbjct: 347 EDL 349

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 35.6 bits (80), Expect = 0.003
 Identities = 14/65 (21%), Positives = 26/65 (40%), Gaps = 8/65 (12%)

Query: 13 LSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSS 72
          L      + L+N      +P    +L    +L  S N+L   +P    +L   +S+ + +
Sbjct: 36 LDRQAHELELNNLGL-SSLPELPPHL---ESLVASCNSLT-ELPELPQSL---KSLLVDN 87

Query: 73 NMLSG 77
          N L  
Sbjct: 88 NNLKA 92

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.5 bits (106), Expect = 6e-07
 Identities = 17/113 (15%), Positives = 37/113 (32%), Gaps = 2/113 (1%)

Query: 18  TAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIP-LSLSNLTAIESMDLSSNMLS 76
           + +  + +  + +    +   + L  L + N      +    L  L  + ++ +  + L 
Sbjct: 11  SGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR 69

Query: 77  GNIPQQLSELTSLEFFDVSDNLLTGPIPRGKQFDTFGKSSFDGNPGLCGGPLS 129
              P        L   ++S N L     +  Q  +  +    GNP  C   L 
Sbjct: 70  FVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHCSCALR 122

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.1 bits (105), Expect = 2e-06
 Identities = 15/82 (18%), Positives = 38/82 (46%), Gaps = 2/82 (2%)

Query: 13  LSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGR-IPLSLSNLTAIESMDLS 71
           LS  + A     +     +    +  + ++++DLSN+ ++   +   LS  + ++++ L 
Sbjct: 21  LSQGVIAFRCPRSFMDQPLAEHFSPFR-VQHMDLSNSVIEVSTLHGILSQCSKLQNLSLE 79

Query: 72  SNMLSGNIPQQLSELTSLEFFD 93
              LS  I   L++ ++L   +
Sbjct: 80  GLRLSDPIVNTLAKNSNLVRLN 101

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 42.8 bits (100), Expect = 3e-06
 Identities = 19/103 (18%), Positives = 35/103 (33%), Gaps = 26/103 (25%)

Query: 22  LSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAI---------------- 65
           L++      +   +  L  + +LDLS+N L+   P +L+ L  +                
Sbjct: 5   LAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNALENVDGV 61

Query: 66  ------ESMDLSSNML-SGNIPQQLSELTSLEFFDVSDNLLTG 101
                 + + L +N L      Q L     L   ++  N L  
Sbjct: 62  ANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 35.8 bits (82), Expect = 0.001
 Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 3/52 (5%)

Query: 42 RNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEFFD 93
          R L L++ +L   +   L  L  +  +DLS N L    P  L+ L  LE   
Sbjct: 1  RVLHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQ 49

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 34.3 bits (78), Expect = 0.003
 Identities = 22/89 (24%), Positives = 37/89 (41%), Gaps = 3/89 (3%)

Query: 1   MSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQG-RIPLSL 59
           +S+         L+ L    +L  +    E    +ANL  L+ L L NN LQ       L
Sbjct: 27  LSHNRLRALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNRLQQSAAIQPL 86

Query: 60  SNLTAIESMDLSSNMLSG--NIPQQLSEL 86
            +   +  ++L  N L     I ++L+E+
Sbjct: 87  VSCPRLVLLNLQGNSLCQEEGIQERLAEM 115

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.2 bits (100), Expect = 7e-06
 Identities = 12/64 (18%), Positives = 22/64 (34%), Gaps = 3/64 (4%)

Query: 34 SIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEFFD 93
           ++ +     ++    NL   +P  L   T    + LS N+L       L   T L   +
Sbjct: 5  EVSKVASHLEVNCDKRNLT-ALPPDLPKDT--TILHLSENLLYTFSLATLMPYTRLTQLN 61

Query: 94 VSDN 97
          +   
Sbjct: 62 LDRA 65

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.1 bits (92), Expect = 9e-05
 Identities = 10/53 (18%), Positives = 17/53 (32%), Gaps = 3/53 (5%)

Query: 22 LSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNM 74
              +    +P  +   K    L LS N L      +L   T +  ++L    
Sbjct: 17 CDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE 66

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.3 bits (90), Expect = 1e-04
 Identities = 12/51 (23%), Positives = 18/51 (35%), Gaps = 1/51 (1%)

Query: 23  SNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSN 73
           +NN+        +  L+ L  L L  N+L   IP        +    L  N
Sbjct: 156 ANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGN 205

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.2 bits (87), Expect = 3e-04
 Identities = 23/107 (21%), Positives = 37/107 (34%), Gaps = 11/107 (10%)

Query: 47  SNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEFFDVSDN--------- 97
           +NNNL       L+ L  ++++ L  N L   IP+       L F  +  N         
Sbjct: 156 ANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNCEIL 214

Query: 98  LLTGPIPRGKQFDTFGKSSFDGNPGLCGGPLSKKCDNSEASPPEEDP 144
                +    +     K   D    +     S +CDNS+  P  + P
Sbjct: 215 YFRRWLQDNAENVYVWKQGVDVK-AMTSNVASVQCDNSDKFPVYKYP 260

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 43.3 bits (100), Expect = 8e-06
 Identities = 12/90 (13%), Positives = 30/90 (33%), Gaps = 5/90 (5%)

Query: 39  KGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGN----IPQQLSELTSLEFFDV 94
           K L+   ++  + +  +   L    +++ + LS N +       + + ++    LE  + 
Sbjct: 8   KSLKLDAITTEDEKS-VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEF 66

Query: 95  SDNLLTGPIPRGKQFDTFGKSSFDGNPGLC 124
           SD           +       +    P L 
Sbjct: 67  SDIFTGRVKDEIPEALRLLLQALLKCPKLH 96

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 41.4 bits (95), Expect = 3e-05
 Identities = 14/90 (15%), Positives = 33/90 (36%), Gaps = 13/90 (14%)

Query: 22  LSNNSFVGEIPTSIAN------LKGLRNLDLSNNNLQGRIPLSL-----SNLTAIESMDL 70
           L++         ++ +        GL+ L L  N ++     +L       +  +  ++L
Sbjct: 250 LNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLEL 309

Query: 71  SSNMLS--GNIPQQLSELTSLEFFDVSDNL 98
           + N  S   ++  ++ E+ S       D L
Sbjct: 310 NGNRFSEEDDVVDEIREVFSTRGRGELDEL 339

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 37.2 bits (84), Expect = 9e-04
 Identities = 9/69 (13%), Positives = 24/69 (34%), Gaps = 7/69 (10%)

Query: 30 EIPTSIANLKGLRNLDLSNNNLQGR----IPLSLSNLTAIESMDLSSNM---LSGNIPQQ 82
           +   +     ++ + LS N +       +  ++++   +E  + S      +   IP+ 
Sbjct: 22 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEA 81

Query: 83 LSELTSLEF 91
          L  L     
Sbjct: 82 LRLLLQALL 90

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.9 bits (99), Expect = 9e-06
 Identities = 18/108 (16%), Positives = 37/108 (34%), Gaps = 1/108 (0%)

Query: 22  LSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQ 81
           L +N+       +  +L  L +L L  N +      +   L +++ + L  N ++   P 
Sbjct: 136 LQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPH 195

Query: 82  QLSELTSLEFFDVSDNLLTGPIPRGKQFDTFGKS-SFDGNPGLCGGPL 128
              +L  L    +  N L+             +    + NP +C    
Sbjct: 196 AFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRA 243

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.3 bits (87), Expect = 3e-04
 Identities = 23/124 (18%), Positives = 44/124 (35%), Gaps = 6/124 (4%)

Query: 1   MSNKGTELEYEKLSNL--ITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLS 58
             N+ + +       L  +  ++L  N      P +  +L  L  L L  NNL      +
Sbjct: 161 HGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEA 220

Query: 59  LSNLTAIESMDLSSNMLSGNIPQQLSELTSLEFFDVSDNLLTGPIP---RGKQFDTFGKS 115
           L+ L A++ + L+ N    +          L+ F  S + +   +P    G+       +
Sbjct: 221 LAPLRALQYLRLNDNPWVCDCR-ARPLWAWLQKFRGSSSEVPCSLPQRLAGRDLKRLAAN 279

Query: 116 SFDG 119
              G
Sbjct: 280 DLQG 283

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.8 bits (97), Expect = 1e-05
 Identities = 15/79 (18%), Positives = 25/79 (31%), Gaps = 3/79 (3%)

Query: 34  SIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEFFD 93
              N    R LDL    +   I    + L   +++D S N +          L  L+   
Sbjct: 13  QYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEI--RKLDGFPLLRRLKTLL 69

Query: 94  VSDNLLTGPIPRGKQFDTF 112
           V++N +        Q    
Sbjct: 70  VNNNRICRIGEGLDQALPD 88

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.9 bits (97), Expect = 2e-05
 Identities = 15/62 (24%), Positives = 30/62 (48%), Gaps = 4/62 (6%)

Query: 35  IANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEFFDV 94
           +ANL  L  L   +N +    PL+  +L  +  + L +N +S   P  L+  ++L    +
Sbjct: 169 LANLSKLTTLKADDNKISDISPLA--SLPNLIEVHLKNNQISDVSP--LANTSNLFIVTL 224

Query: 95  SD 96
           ++
Sbjct: 225 TN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.4 bits (93), Expect = 5e-05
 Identities = 13/55 (23%), Positives = 25/55 (45%), Gaps = 4/55 (7%)

Query: 17  ITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLS 71
           +T +   +N      P  +A+L  L  + L NN +    P  L+N + +  + L+
Sbjct: 175 LTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLT 225

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.7 bits (86), Expect = 5e-04
 Identities = 12/65 (18%), Positives = 25/65 (38%), Gaps = 5/65 (7%)

Query: 11 EKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDL 70
            L+N I  I    ++    +  + A+L G+  L      +   I   +  L  +  ++L
Sbjct: 16 PALANAI-KIAAGKSNVTDTV--TQADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLEL 70

Query: 71 SSNML 75
            N +
Sbjct: 71 KDNQI 75

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 36.5 bits (83), Expect = 0.001
 Identities = 14/82 (17%), Positives = 31/82 (37%), Gaps = 10/82 (12%)

Query: 32  PTSI------ANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSE 85
           PT+I        L     +    +N+     ++ ++L  I ++      ++  I   +  
Sbjct: 6   PTAINVIFPDPALANAIKIAAGKSNVTD--TVTQADLDGITTLSAFGTGVT-TIE-GVQY 61

Query: 86  LTSLEFFDVSDNLLTGPIPRGK 107
           L +L   ++ DN +T   P   
Sbjct: 62  LNNLIGLELKDNQITDLAPLKN 83

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.0 bits (94), Expect = 3e-05
 Identities = 11/60 (18%), Positives = 17/60 (28%), Gaps = 10/60 (16%)

Query: 31  IPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLE 90
                    G   LD+S   +       L NL  + +               L +L +LE
Sbjct: 193 PNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTY----------NLKKLPTLE 242

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.1 bits (89), Expect = 2e-04
 Identities = 10/65 (15%), Positives = 22/65 (33%), Gaps = 3/65 (4%)

Query: 18 TAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSG 77
             +   +    EIP+ +   +    L      L+     + S    +E +++S N +  
Sbjct: 11 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLE 67

Query: 78 NIPQQ 82
           I   
Sbjct: 68 VIEAD 72

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 39.6 bits (91), Expect = 9e-05
 Identities = 9/68 (13%), Positives = 25/68 (36%), Gaps = 5/68 (7%)

Query: 11 EKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDL 70
          +  +  I    L   S    +  +   L  +  +  +N++++      +  L  +  + L
Sbjct: 21 DAFAETI-KDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFL 75

Query: 71 SSNMLSGN 78
          + N L+  
Sbjct: 76 NGNKLTDI 83

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.8 bits (89), Expect = 1e-04
 Identities = 10/77 (12%), Positives = 29/77 (37%), Gaps = 10/77 (12%)

Query: 31  IPTSI------ANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLS 84
           +PT I               +L   ++     ++ + L +I+ +  +++ +       + 
Sbjct: 10  VPTPIKQIFSDDAFAETIKDNLKKKSVTD--AVTQNELNSIDQIIANNSDIKSVQG--IQ 65

Query: 85  ELTSLEFFDVSDNLLTG 101
            L ++    ++ N LT 
Sbjct: 66  YLPNVTKLFLNGNKLTD 82

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 36.5 bits (83), Expect = 9e-04
 Identities = 12/39 (30%), Positives = 23/39 (58%), Gaps = 2/39 (5%)

Query: 34  SIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSS 72
            +A L  L+NL LS N++   +  +L+ L  ++ ++L S
Sbjct: 173 PLAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFS 209

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.1 bits (85), Expect = 4e-04
 Identities = 20/128 (15%), Positives = 44/128 (34%), Gaps = 15/128 (11%)

Query: 6   TELEYEKLSNLITAI---------ILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIP 56
            EL+ E++  L   +          L            +        L+  ++     + 
Sbjct: 2   NELKPEQVEQLKLIMSKRYDGSQQALDLKGL--RSDPDLVAQNIDVVLNRRSSMAA-TLR 58

Query: 57  LSLSNLTAIESMDLSSNMLSG--NIPQQLSELTSLEFFDVSDNLLTGPIPRGKQFDTFGK 114
           +   N+  + S++LS+N L    ++   + +  +L+  ++S N L       K      +
Sbjct: 59  IIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLE 118

Query: 115 S-SFDGNP 121
               DGN 
Sbjct: 119 ELWLDGNS 126

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 35.4 bits (80), Expect = 0.002
 Identities = 10/68 (14%), Positives = 25/68 (36%), Gaps = 5/68 (7%)

Query: 11 EKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDL 70
            L+  +   +L   +    +  S  +L  +  L      ++  I   +  L  +  ++ 
Sbjct: 15 TALAEKM-KTVLGKTNVTDTV--SQTDLDQVTTLQADRLGIK-SID-GVEYLNNLTQINF 69

Query: 71 SSNMLSGN 78
          S+N L+  
Sbjct: 70 SNNQLTDI 77

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} Length = 198

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

 Score = 35.4 bits (80), Expect = 0.002
 Identities = 16/67 (23%), Positives = 26/67 (38%), Gaps = 8/67 (11%)

Query: 30 EIPTSIANLKGLRNLDLSNNNLQGRIPL------SLSNLTAIESMDLSSNMLSGNIPQQL 83
          +        K +   +     L G IP       +LS L A + + LS+N +   I   L
Sbjct: 9  DAIRIFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIE-KIS-SL 66

Query: 84 SELTSLE 90
          S + +L 
Sbjct: 67 SGMENLR 73

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	207
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.75
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.63
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.62
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.61
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.6
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.58
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.57
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.53
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.48
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.41
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.39
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.37
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.36
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.3
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.28
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.21
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.11
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.1
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.09
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.09
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.08
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.06
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.06
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	98.95
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	98.94
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	98.92
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.92
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.8
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.64
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.63
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	98.4
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.21
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.13
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.04
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	97.96
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	97.9
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	97.81
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	97.75
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.39
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.16
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	95.5
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	95.24

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.75  E-value=1.7e-18  Score=128.32  Aligned_cols=124  Identities=19%  Similarity=0.297  Sum_probs=106.7

Q ss_pred             cchhhhhhhcccccEEEccCCCCCC-CCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhh
Q 046642            5 GTELEYEKLSNLITAIILSNNSFVG-EIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQL   83 (207)
Q Consensus         5 ~~~~~~~~~l~~L~~L~Ls~n~i~~-~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~   83 (207)
                      +.+.....++.++++|+|++|.|++ ..+..|.++++|+.|+|++|.+....+..|..+++|+.|++++|++++..|+.|
T Consensus        19 ~L~~iP~~lp~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F   98 (192)
T d1w8aa_          19 GLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMF   98 (192)
T ss_dssp             CCSSCCSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSS
T ss_pred             CcCccCCCCCCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccccccccCHHHH
Confidence            3333345577899999999999986 446678999999999999999998889999999999999999999998778889


Q ss_pred             hcCCccceecCCCCcCcCCCCCC-CCCCCCCcccccCCCCCCCCCC
Q 046642           84 SELTSLEFFDVSDNLLTGPIPRG-KQFDTFGKSSFDGNPGLCGGPL  128 (207)
Q Consensus        84 ~~l~~L~~l~l~~N~l~~~~p~~-~~~~~l~~~~~~~n~~~c~~~~  128 (207)
                      .++++|++|++++|.+++..|.. ..+..+..+.+.+|++.|.|..
T Consensus        99 ~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~  144 (192)
T d1w8aa_          99 LGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHL  144 (192)
T ss_dssp             TTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGG
T ss_pred             hCCCcccccccCCccccccCHHHhcCCcccccccccccccccccch
Confidence            99999999999999999766653 4567788899999999998754

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.63  E-value=6.8e-16  Score=114.04  Aligned_cols=95  Identities=17%  Similarity=0.254  Sum_probs=87.3

Q ss_pred             hhhhhcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCc
Q 046642            9 EYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTS   88 (207)
Q Consensus         9 ~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~   88 (207)
                      ..+..+++|+.|+|++|.+....+..|..+++|+.|+|++|+++...|..|.++++|+.|+|++|.|++..|+.|..+++
T Consensus        48 ~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~  127 (192)
T d1w8aa_          48 GLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNS  127 (192)
T ss_dssp             CSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTT
T ss_pred             cccCCCceEeeeeccccccccccccccccccccceeeeccccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcc
Confidence            44567899999999999999999999999999999999999999878889999999999999999999888888999999


Q ss_pred             cceecCCCCcCcCCC
Q 046642           89 LEFFDVSDNLLTGPI  103 (207)
Q Consensus        89 L~~l~l~~N~l~~~~  103 (207)
                      |+++++++|.+.+..
T Consensus       128 L~~l~L~~N~~~~~~  142 (192)
T d1w8aa_         128 LTSLNLASNPFNCNC  142 (192)
T ss_dssp             CCEEECTTCCBCCSG
T ss_pred             ccccccccccccccc
Confidence            999999999997644

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.62  E-value=2.5e-16  Score=124.57  Aligned_cols=113  Identities=30%  Similarity=0.513  Sum_probs=101.2

Q ss_pred             cEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCccceecCCCC
Q 046642           18 TAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEFFDVSDN   97 (207)
Q Consensus        18 ~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l~l~~N   97 (207)
                      ..++++++.+.+.+|..+..+++++.+++++|.+.+.+| .+..+++|+.|++++|+++|.+|+.++++++|++|++++|
T Consensus       200 ~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N  278 (313)
T d1ogqa_         200 AFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFN  278 (313)
T ss_dssp             SEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSS
T ss_pred             ccccccccccccccccccccccccccccccccccccccc-ccccccccccccCccCeecccCChHHhCCCCCCEEECcCC
Confidence            457777777777888888889999999999999986654 6889999999999999999999999999999999999999


Q ss_pred             cCcCCCCCCCCCCCCCcccccCCCCCCCCCCCCCC
Q 046642           98 LLTGPIPRGKQFDTFGKSSFDGNPGLCGGPLSKKC  132 (207)
Q Consensus        98 ~l~~~~p~~~~~~~l~~~~~~~n~~~c~~~~~~~C  132 (207)
                      +++|.+|....+..+..+++.+|+.+|+.|+. .|
T Consensus       279 ~l~g~iP~~~~L~~L~~l~l~~N~~l~g~plp-~c  312 (313)
T d1ogqa_         279 NLCGEIPQGGNLQRFDVSAYANNKCLCGSPLP-AC  312 (313)
T ss_dssp             EEEEECCCSTTGGGSCGGGTCSSSEEESTTSS-CC
T ss_pred             cccccCCCcccCCCCCHHHhCCCccccCCCCC-CC
Confidence            99999998888889999999999999998864 55

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=2.4e-15  Score=116.43  Aligned_cols=119  Identities=26%  Similarity=0.333  Sum_probs=86.9

Q ss_pred             hhhhhhcccccEEEccCCCCCCCCchhccCCCCCCEEECcC------------------------CcCCCCCcccCCCCC
Q 046642            8 LEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSN------------------------NNLQGRIPLSLSNLT   63 (207)
Q Consensus         8 ~~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~------------------------n~l~~~~p~~~~~l~   63 (207)
                      +..+..+++|++|+|++|.++ ..+..+..+++|+.|++++                        |.++...+..+..++
T Consensus        70 l~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~  148 (266)
T d1p9ag_          70 LQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTP  148 (266)
T ss_dssp             EECCSCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCT
T ss_pred             ccccccccccccccccccccc-ccccccccccccccccccccccceeeccccccccccccccccccccceeccccccccc
Confidence            333345666666666666665 3444555555555555554                        455544455567788


Q ss_pred             CCCEEecCCCCCCCCCchhhhcCCccceecCCCCcCcCCCCCC-CCCCCCCcccccCCCCCCCCCC
Q 046642           64 AIESMDLSSNMLSGNIPQQLSELTSLEFFDVSDNLLTGPIPRG-KQFDTFGKSSFDGNPGLCGGPL  128 (207)
Q Consensus        64 ~L~~L~ls~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~-~~~~~l~~~~~~~n~~~c~~~~  128 (207)
                      +|+.+++++|++++..++.|..+++|++|++++|+++ .+|.. .....+..+.+.|||+.|+|..
T Consensus       149 ~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~CdC~~  213 (266)
T d1p9ag_         149 KLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNCEI  213 (266)
T ss_dssp             TCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCSGGG
T ss_pred             cchhcccccccccccCccccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCCCCCcch
Confidence            9999999999999877788999999999999999999 66654 4567788899999999999853

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=3.2e-15  Score=106.93  Aligned_cols=112  Identities=17%  Similarity=0.151  Sum_probs=93.9

Q ss_pred             cccEEEccCCCCCCCCchhccCCCCCCEEECcCC-cCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCccceecC
Q 046642           16 LITAIILSNNSFVGEIPTSIANLKGLRNLDLSNN-NLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEFFDV   94 (207)
Q Consensus        16 ~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n-~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l~l   94 (207)
                      ..+.++.+++.+. ..|..+..+++|+.|++++| .++...+..|.++++|+.|++++|.|+...|..|..+++|++|++
T Consensus         9 ~~~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L   87 (156)
T d2ifga3           9 GSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNL   87 (156)
T ss_dssp             SSSCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEEC
T ss_pred             CCCeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceec
Confidence            3466888999988 67888999999999999866 588666778999999999999999999777888999999999999


Q ss_pred             CCCcCcCCCCCCCCCCCCCcccccCCCCCCCCCC
Q 046642           95 SDNLLTGPIPRGKQFDTFGKSSFDGNPGLCGGPL  128 (207)
Q Consensus        95 ~~N~l~~~~p~~~~~~~l~~~~~~~n~~~c~~~~  128 (207)
                      ++|+++...+.......+..+++++||+.|+|..
T Consensus        88 s~N~l~~l~~~~~~~~~l~~L~L~~Np~~C~C~~  121 (156)
T d2ifga3          88 SFNALESLSWKTVQGLSLQELVLSGNPLHCSCAL  121 (156)
T ss_dssp             CSSCCSCCCSTTTCSCCCCEEECCSSCCCCCGGG
T ss_pred             cCCCCcccChhhhccccccccccCCCcccCCchH
Confidence            9999995444444445678889999999998843

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=1.3e-15  Score=118.90  Aligned_cols=119  Identities=15%  Similarity=0.190  Sum_probs=98.3

Q ss_pred             hhhhcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCcc
Q 046642           10 YEKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSL   89 (207)
Q Consensus        10 ~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L   89 (207)
                      ....+.+|+.+++++|.|++..+..|..+++|+.|++++|++++..+..|.++++|+.+++++|.+++..|..|..+++|
T Consensus       124 ~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L  203 (284)
T d1ozna_         124 LFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRL  203 (284)
T ss_dssp             TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTC
T ss_pred             ccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccccccchhhhhhccccccChhHhhhhhhc
Confidence            34567778888888888886667778888889999999999887777888889999999999999988888889999999


Q ss_pred             ceecCCCCcCcCCCCCC-CCCCCCCcccccCCCCCCCCCC
Q 046642           90 EFFDVSDNLLTGPIPRG-KQFDTFGKSSFDGNPGLCGGPL  128 (207)
Q Consensus        90 ~~l~l~~N~l~~~~p~~-~~~~~l~~~~~~~n~~~c~~~~  128 (207)
                      ++|++++|.+.+..|.. .....+..+++++||+.|+|+.
T Consensus       204 ~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C~~  243 (284)
T d1ozna_         204 MTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRA  243 (284)
T ss_dssp             CEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGG
T ss_pred             ccccccccccccccccccccccccCEEEecCCCCCCCccc
Confidence            99999999998655533 3456788889999999998754

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.57  E-value=5e-15  Score=101.88  Aligned_cols=100  Identities=22%  Similarity=0.302  Sum_probs=70.2

Q ss_pred             cEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCccceecCCCC
Q 046642           18 TAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEFFDVSDN   97 (207)
Q Consensus        18 ~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l~l~~N   97 (207)
                      ++|+|++|+|+ .++ .+..+++|++|++++|.++ .+|+.+..+++|+.|++++|.++ .+| .+..+++|+.+++++|
T Consensus         1 R~L~Ls~n~l~-~l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~-~l~-~~~~l~~L~~L~l~~N   75 (124)
T d1dcea3           1 RVLHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVD-GVANLPRLQELLLCNN   75 (124)
T ss_dssp             SEEECTTSCCS-SCC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCG-GGTTCSSCCEEECCSS
T ss_pred             CEEEcCCCCCC-CCc-ccccCCCCCEEECCCCccC-cchhhhhhhhccccccccccccc-ccC-ccccccccCeEECCCC
Confidence            46788888887 444 3677788888888888887 56767777888888888888887 444 3777788888888888


Q ss_pred             cCcCCCC--CCCCCCCCCcccccCCCC
Q 046642           98 LLTGPIP--RGKQFDTFGKSSFDGNPG  122 (207)
Q Consensus        98 ~l~~~~p--~~~~~~~l~~~~~~~n~~  122 (207)
                      +++....  ....++.+..+++.+|+.
T Consensus        76 ~i~~~~~~~~l~~~~~L~~L~l~~N~i  102 (124)
T d1dcea3          76 RLQQSAAIQPLVSCPRLVLLNLQGNSL  102 (124)
T ss_dssp             CCCSSSTTGGGGGCTTCCEEECTTSGG
T ss_pred             ccCCCCCchhhcCCCCCCEEECCCCcC
Confidence            8773221  123445666677777763

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.53  E-value=3.7e-14  Score=97.44  Aligned_cols=95  Identities=26%  Similarity=0.317  Sum_probs=80.7

Q ss_pred             ccchhhhhhhcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCC-chh
Q 046642            4 KGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNI-PQQ   82 (207)
Q Consensus         4 ~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~-p~~   82 (207)
                      ...+.....-+.+|++|++++|.|+ .+|+.+..+++|+.|++++|.++ .+| .+..+++|+.|++++|.++... ...
T Consensus         9 ~l~~l~~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~-~l~-~~~~l~~L~~L~l~~N~i~~~~~~~~   85 (124)
T d1dcea3           9 DLTVLCHLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVD-GVANLPRLQELLLCNNRLQQSAAIQP   85 (124)
T ss_dssp             CCSSCCCGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCG-GGTTCSSCCEEECCSSCCCSSSTTGG
T ss_pred             CCCCCcccccCCCCCEEECCCCccC-cchhhhhhhhccccccccccccc-ccC-ccccccccCeEECCCCccCCCCCchh
Confidence            3344444567889999999999999 67888999999999999999998 555 5899999999999999998432 246


Q ss_pred             hhcCCccceecCCCCcCcC
Q 046642           83 LSELTSLEFFDVSDNLLTG  101 (207)
Q Consensus        83 ~~~l~~L~~l~l~~N~l~~  101 (207)
                      +..+++|+.+++++|+++.
T Consensus        86 l~~~~~L~~L~l~~N~i~~  104 (124)
T d1dcea3          86 LVSCPRLVLLNLQGNSLCQ  104 (124)
T ss_dssp             GGGCTTCCEEECTTSGGGG
T ss_pred             hcCCCCCCEEECCCCcCCc
Confidence            8899999999999999984

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=3e-14  Score=102.41  Aligned_cols=106  Identities=14%  Similarity=0.098  Sum_probs=87.0

Q ss_pred             cccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCccceec
Q 046642           14 SNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEFFD   93 (207)
Q Consensus        14 l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l~   93 (207)
                      +..+++|+|++|.|+ .+++.+..+++|+.|++++|.++ .++ .+..+++|+.|++++|.++...+..+..+++|+.|+
T Consensus        17 ~~~lr~L~L~~n~I~-~i~~~~~~l~~L~~L~Ls~N~i~-~l~-~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~   93 (162)
T d1a9na_          17 AVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR-KLD-GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELI   93 (162)
T ss_dssp             TTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCC-EEC-CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEE
T ss_pred             cCcCcEEECCCCCCC-ccCccccccccCCEEECCCCCCC-ccC-CcccCcchhhhhcccccccCCCccccccccccccce
Confidence            456899999999999 56777788999999999999998 454 588999999999999999965555677899999999


Q ss_pred             CCCCcCcCCC--CCCCCCCCCCcccccCCCC
Q 046642           94 VSDNLLTGPI--PRGKQFDTFGKSSFDGNPG  122 (207)
Q Consensus        94 l~~N~l~~~~--p~~~~~~~l~~~~~~~n~~  122 (207)
                      +++|+++...  .....++.+..+++.+||.
T Consensus        94 L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i  124 (162)
T d1a9na_          94 LTNNSLVELGDLDPLASLKSLTYLCILRNPV  124 (162)
T ss_dssp             CCSCCCCCGGGGGGGGGCTTCCEEECCSSGG
T ss_pred             eccccccccccccccccccccchhhcCCCcc
Confidence            9999998421  2234566778888888864

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.41  E-value=4.3e-14  Score=111.46  Aligned_cols=88  Identities=35%  Similarity=0.530  Sum_probs=48.2

Q ss_pred             ccEEEccCCCCCC--CCchhccCCCCCCEEECcC-CcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCccceec
Q 046642           17 ITAIILSNNSFVG--EIPTSIANLKGLRNLDLSN-NNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEFFD   93 (207)
Q Consensus        17 L~~L~Ls~n~i~~--~~p~~~~~l~~L~~L~Ls~-n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l~   93 (207)
                      ++.|+|++|.++|  .+|..++++++|++|+|++ |+++|.+|..++++++|++|++++|.+.+..+..+..+..|+.++
T Consensus        52 v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~  131 (313)
T d1ogqa_          52 VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLD  131 (313)
T ss_dssp             EEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEE
T ss_pred             EEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcccc
Confidence            4555555555554  2455555555555555554 455555555555555555555555555555555555555555555


Q ss_pred             CCCCcCcCCCC
Q 046642           94 VSDNLLTGPIP  104 (207)
Q Consensus        94 l~~N~l~~~~p  104 (207)
                      +++|.+.+.+|
T Consensus       132 l~~N~~~~~~p  142 (313)
T d1ogqa_         132 FSYNALSGTLP  142 (313)
T ss_dssp             CCSSEEESCCC
T ss_pred             cccccccccCc
Confidence            55555554444

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.39  E-value=5.8e-13  Score=104.39  Aligned_cols=111  Identities=22%  Similarity=0.278  Sum_probs=88.2

Q ss_pred             hhcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCccce
Q 046642           12 KLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEF   91 (207)
Q Consensus        12 ~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~   91 (207)
                      ..+++|+.|++++|.+++..+..|..++.++.|++++|.+.+..+..+..+++|++|+|++|.|+ .+|..+..+++|+.
T Consensus       168 ~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~  246 (305)
T d1xkua_         168 GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQV  246 (305)
T ss_dssp             SCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCE
T ss_pred             ccCCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeeccccccc-ccccccccccCCCE
Confidence            35678888888888888777888888888999999999888777788888889999999999888 66788888899999


Q ss_pred             ecCCCCcCcCCCCCC--------CCCCCCCcccccCCCCCC
Q 046642           92 FDVSDNLLTGPIPRG--------KQFDTFGKSSFDGNPGLC  124 (207)
Q Consensus        92 l~l~~N~l~~~~p~~--------~~~~~l~~~~~~~n~~~c  124 (207)
                      |++++|+++. ++..        .....+..+++.+||+-+
T Consensus       247 L~Ls~N~i~~-i~~~~f~~~~~~~~~~~L~~L~L~~N~~~~  286 (305)
T d1xkua_         247 VYLHNNNISA-IGSNDFCPPGYNTKKASYSGVSLFSNPVQY  286 (305)
T ss_dssp             EECCSSCCCC-CCTTSSSCSSCCTTSCCCSEEECCSSSSCG
T ss_pred             EECCCCccCc-cChhhccCcchhcccCCCCEEECCCCcCcc
Confidence            9999998884 4322        123456667788888654

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=8.1e-13  Score=94.17  Aligned_cols=88  Identities=20%  Similarity=0.194  Sum_probs=75.3

Q ss_pred             hcccccEEEccCC-CCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCccce
Q 046642           13 LSNLITAIILSNN-SFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEF   91 (207)
Q Consensus        13 ~l~~L~~L~Ls~n-~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~   91 (207)
                      .+++|+.|++++| .|+...++.|.++++|+.|++++|+++...|..|..+++|+.|+|++|+|+ .+|.......+|+.
T Consensus        29 ~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~-~l~~~~~~~~~l~~  107 (156)
T d2ifga3          29 GAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQE  107 (156)
T ss_dssp             SCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCS-CCCSTTTCSCCCCE
T ss_pred             CccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCCCCc-ccChhhhccccccc
Confidence            3578999999876 598777788999999999999999999777889999999999999999999 45544444457999


Q ss_pred             ecCCCCcCcC
Q 046642           92 FDVSDNLLTG  101 (207)
Q Consensus        92 l~l~~N~l~~  101 (207)
                      |++++|++..
T Consensus       108 L~L~~Np~~C  117 (156)
T d2ifga3         108 LVLSGNPLHC  117 (156)
T ss_dssp             EECCSSCCCC
T ss_pred             cccCCCcccC
Confidence            9999999974

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=2.2e-12  Score=99.48  Aligned_cols=108  Identities=26%  Similarity=0.230  Sum_probs=81.7

Q ss_pred             hhhcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCccc
Q 046642           11 EKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLE   90 (207)
Q Consensus        11 ~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~   90 (207)
                      +..+++|++|+|++|.|+ .+| .++.+++|+.|++++|+++ ..+..+..+++|+.|++++|.+....+..+..+.++.
T Consensus        51 f~~l~~L~~L~L~~N~l~-~l~-~~~~l~~L~~L~Ls~N~l~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~  127 (266)
T d1p9ag_          51 LMPYTRLTQLNLDRAELT-KLQ-VDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQ  127 (266)
T ss_dssp             GTTCTTCCEEECTTSCCC-EEE-CCSCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCC
T ss_pred             hhcccccccccccccccc-ccc-ccccccccccccccccccc-ccccccccccccccccccccccceeeccccccccccc
Confidence            456889999999999998 455 3678999999999999998 5677888899999999999888866666677777777


Q ss_pred             eecCCCCcCcCCCCCC-CCCCCCCcccccCCC
Q 046642           91 FFDVSDNLLTGPIPRG-KQFDTFGKSSFDGNP  121 (207)
Q Consensus        91 ~l~l~~N~l~~~~p~~-~~~~~l~~~~~~~n~  121 (207)
                      .+++++|.++...+.. ..+..+..+++.+|.
T Consensus       128 ~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~  159 (266)
T d1p9ag_         128 ELYLKGNELKTLPPGLLTPTPKLEKLSLANNN  159 (266)
T ss_dssp             EEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred             cccccccccceeccccccccccchhccccccc
Confidence            7777777776433332 223445555565553

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=2.2e-12  Score=92.41  Aligned_cols=88  Identities=22%  Similarity=0.238  Sum_probs=75.3

Q ss_pred             hhhcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCc--hhhhcCCc
Q 046642           11 EKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIP--QQLSELTS   88 (207)
Q Consensus        11 ~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p--~~~~~l~~   88 (207)
                      +..+++|+.|+|++|.|+ .++ .|..+++|+.|++++|+++...+..+..+++|+.|++++|.++ .++  ..+..+++
T Consensus        37 ~~~l~~L~~L~Ls~N~i~-~l~-~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~L~~N~i~-~~~~l~~l~~l~~  113 (162)
T d1a9na_          37 GATLDQFDAIDFSDNEIR-KLD-GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKS  113 (162)
T ss_dssp             GGGTTCCSEEECCSSCCC-EEC-CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTT
T ss_pred             ccccccCCEEECCCCCCC-ccC-CcccCcchhhhhcccccccCCCccccccccccccceecccccc-ccccccccccccc
Confidence            456789999999999999 454 5889999999999999999555555678999999999999998 454  36788999


Q ss_pred             cceecCCCCcCcC
Q 046642           89 LEFFDVSDNLLTG  101 (207)
Q Consensus        89 L~~l~l~~N~l~~  101 (207)
                      |+.+++++|+++.
T Consensus       114 L~~L~l~~N~i~~  126 (162)
T d1a9na_         114 LTYLCILRNPVTN  126 (162)
T ss_dssp             CCEEECCSSGGGG
T ss_pred             cchhhcCCCcccc
Confidence            9999999999873

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=1.1e-11  Score=96.21  Aligned_cols=112  Identities=17%  Similarity=0.126  Sum_probs=92.0

Q ss_pred             hhhcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCccc
Q 046642           11 EKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLE   90 (207)
Q Consensus        11 ~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~   90 (207)
                      +.-+++|++|++++|.+....+..+..+++|+.+++++|.+++..+..|..+++|+.|++++|.+++..+..|..+++|+
T Consensus       101 ~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~  180 (284)
T d1ozna_         101 FHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLD  180 (284)
T ss_dssp             TTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred             hcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccccccc
Confidence            45568899999999999877777788889999999999999866677888899999999999999877778888999999


Q ss_pred             eecCCCCcCcCCCCCC-CCCCCCCcccccCCCC
Q 046642           91 FFDVSDNLLTGPIPRG-KQFDTFGKSSFDGNPG  122 (207)
Q Consensus        91 ~l~l~~N~l~~~~p~~-~~~~~l~~~~~~~n~~  122 (207)
                      .+++++|.+++..|.. ..+..+..+++.+|..
T Consensus       181 ~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i  213 (284)
T d1ozna_         181 RLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNL  213 (284)
T ss_dssp             EEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred             hhhhhhccccccChhHhhhhhhccccccccccc
Confidence            9999999998776654 3445667777777754

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.21  E-value=6.4e-11  Score=87.22  Aligned_cols=100  Identities=24%  Similarity=0.366  Sum_probs=54.0

Q ss_pred             cccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCccceec
Q 046642           14 SNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEFFD   93 (207)
Q Consensus        14 l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l~   93 (207)
                      +.+++.|++++|.|+. ++ .+..+++|++|++++|++++ ++. ++.+++|+.|++++|.+. .++ .+..++.|+.++
T Consensus        39 l~~l~~L~l~~~~i~~-l~-~l~~l~nL~~L~Ls~N~l~~-~~~-l~~l~~L~~L~l~~n~~~-~~~-~l~~l~~L~~L~  112 (199)
T d2omxa2          39 LDQVTTLQADRLGIKS-ID-GVEYLNNLTQINFSNNQLTD-ITP-LKNLTKLVDILMNNNQIA-DIT-PLANLTNLTGLT  112 (199)
T ss_dssp             HTTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCC-CCG-GGTTCTTCSEEE
T ss_pred             hcCCCEEECCCCCCCC-cc-ccccCCCcCcCccccccccC-ccc-ccCCcccccccccccccc-ccc-cccccccccccc
Confidence            4556666666666652 22 35556666666666666653 222 556666666666666655 333 255566666666


Q ss_pred             CCCCcCcCCCCCCCCCCCCCcccccCC
Q 046642           94 VSDNLLTGPIPRGKQFDTFGKSSFDGN  120 (207)
Q Consensus        94 l~~N~l~~~~p~~~~~~~l~~~~~~~n  120 (207)
                      +++|.+.. ++....+..+..+.+++|
T Consensus       113 l~~~~~~~-~~~~~~l~~L~~L~l~~n  138 (199)
T d2omxa2         113 LFNNQITD-IDPLKNLTNLNRLELSSN  138 (199)
T ss_dssp             CCSSCCCC-CGGGTTCTTCSEEECCSS
T ss_pred             cccccccc-ccccchhhhhHHhhhhhh
Confidence            66655543 222233444455555544

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.11  E-value=1.3e-10  Score=92.88  Aligned_cols=106  Identities=22%  Similarity=0.222  Sum_probs=63.2

Q ss_pred             hhhcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCC--------------------cccCCCCCCCCEEec
Q 046642           11 EKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRI--------------------PLSLSNLTAIESMDL   70 (207)
Q Consensus        11 ~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~--------------------p~~~~~l~~L~~L~l   70 (207)
                      ...+++|+.|++++|.+++..+  +..+++|+.|++++|.+++..                    ...+..+++++.|++
T Consensus       237 l~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~~~n~l~~~~~~~~~~~l~~L~l  314 (384)
T d2omza2         237 LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTL  314 (384)
T ss_dssp             GGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEEC
T ss_pred             hhcccccchhccccCccCCCCc--ccccccCCEeeccCcccCCCCccccccccccccccccccccccccchhcccCeEEC
Confidence            3455666666666666664322  555666666666666554221                    112445566777777


Q ss_pred             CCCCCCCCCchhhhcCCccceecCCCCcCcCCCCCCCCCCCCCcccccCCC
Q 046642           71 SSNMLSGNIPQQLSELTSLEFFDVSDNLLTGPIPRGKQFDTFGKSSFDGNP  121 (207)
Q Consensus        71 s~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~~~~~l~~~~~~~n~  121 (207)
                      ++|.+++. + .+..+++|+.|++++|++++ ++....++.++.+++++|.
T Consensus       315 s~n~l~~l-~-~l~~l~~L~~L~L~~n~l~~-l~~l~~l~~L~~L~l~~N~  362 (384)
T d2omza2         315 YFNNISDI-S-PVSSLTKLQRLFFANNKVSD-VSSLANLTNINWLSAGHNQ  362 (384)
T ss_dssp             CSSCCSCC-G-GGGGCTTCCEEECCSSCCCC-CGGGGGCTTCCEEECCSSC
T ss_pred             CCCCCCCC-c-ccccCCCCCEEECCCCCCCC-ChhHcCCCCCCEEECCCCc
Confidence            77777744 2 26667777777777777763 4444455666666766664

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.10  E-value=3.4e-10  Score=83.92  Aligned_cols=81  Identities=26%  Similarity=0.357  Sum_probs=48.9

Q ss_pred             cccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCccceec
Q 046642           14 SNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEFFD   93 (207)
Q Consensus        14 l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l~   93 (207)
                      +.+|+.|++++|.++.. + .+..+++|+.|++++|.+++ ++ .++.+++|+.|++++|.++ .+| .+..+++|+.++
T Consensus        45 L~~L~~L~l~~~~i~~l-~-~l~~l~~L~~L~L~~n~i~~-l~-~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~  118 (210)
T d1h6ta2          45 LNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTD-IK-PLANLKNLGWLFLDENKVK-DLS-SLKDLKKLKSLS  118 (210)
T ss_dssp             HHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCC-CGG-GGTTCTTCCEEE
T ss_pred             hcCccEEECcCCCCCCc-h-hHhhCCCCCEEeCCCccccC-cc-ccccCcccccccccccccc-ccc-cccccccccccc
Confidence            45666666666666632 2 25566666666666666663 33 2456666666666666666 344 356666666666


Q ss_pred             CCCCcCc
Q 046642           94 VSDNLLT  100 (207)
Q Consensus        94 l~~N~l~  100 (207)
                      +++|.+.
T Consensus       119 l~~~~~~  125 (210)
T d1h6ta2         119 LEHNGIS  125 (210)
T ss_dssp             CTTSCCC
T ss_pred             ccccccc
Confidence            6666554

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.09  E-value=1.2e-10  Score=93.01  Aligned_cols=104  Identities=22%  Similarity=0.342  Sum_probs=83.6

Q ss_pred             hhhhcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCcc
Q 046642           10 YEKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSL   89 (207)
Q Consensus        10 ~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L   89 (207)
                      ....+..++.+++++|.+++ + ..+..+++++.|++++|++++. + .+..+++|+.|++++|.++ .++ .+..+++|
T Consensus       280 ~~~~~~~l~~l~~~~n~l~~-~-~~~~~~~~l~~L~ls~n~l~~l-~-~l~~l~~L~~L~L~~n~l~-~l~-~l~~l~~L  353 (384)
T d2omza2         280 PLAGLTALTNLELNENQLED-I-SPISNLKNLTYLTLYFNNISDI-S-PVSSLTKLQRLFFANNKVS-DVS-SLANLTNI  353 (384)
T ss_dssp             GGTTCTTCSEEECCSSCCSC-C-GGGGGCTTCSEEECCSSCCSCC-G-GGGGCTTCCEEECCSSCCC-CCG-GGGGCTTC
T ss_pred             cccccccccccccccccccc-c-cccchhcccCeEECCCCCCCCC-c-ccccCCCCCEEECCCCCCC-CCh-hHcCCCCC
Confidence            34556778999999999985 3 3477889999999999999854 3 3788999999999999998 455 58899999


Q ss_pred             ceecCCCCcCcCCCCCCCCCCCCCcccccCC
Q 046642           90 EFFDVSDNLLTGPIPRGKQFDTFGKSSFDGN  120 (207)
Q Consensus        90 ~~l~l~~N~l~~~~p~~~~~~~l~~~~~~~n  120 (207)
                      ++|++++|++++..| ...+..+..+++++|
T Consensus       354 ~~L~l~~N~l~~l~~-l~~l~~L~~L~L~~N  383 (384)
T d2omza2         354 NWLSAGHNQISDLTP-LANLTRITQLGLNDQ  383 (384)
T ss_dssp             CEEECCSSCCCBCGG-GTTCTTCSEEECCCE
T ss_pred             CEEECCCCcCCCChh-hccCCCCCEeeCCCC
Confidence            999999999996554 555677777777766

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.09  E-value=5.7e-10  Score=81.97  Aligned_cols=108  Identities=25%  Similarity=0.375  Sum_probs=83.8

Q ss_pred             hhhhhhhcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcC
Q 046642            7 ELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSEL   86 (207)
Q Consensus         7 ~~~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l   86 (207)
                      +++-...+++|++|++++|.+++. ++ +.++++|+.|++++|.+. .++ .+..+++|+.|++++|.+...  +.+..+
T Consensus        54 ~l~~l~~l~nL~~L~Ls~N~l~~~-~~-l~~l~~L~~L~l~~n~~~-~~~-~l~~l~~L~~L~l~~~~~~~~--~~~~~l  127 (199)
T d2omxa2          54 SIDGVEYLNNLTQINFSNNQLTDI-TP-LKNLTKLVDILMNNNQIA-DIT-PLANLTNLTGLTLFNNQITDI--DPLKNL  127 (199)
T ss_dssp             CCTTGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCC-CCG-GGTTCTTCSEEECCSSCCCCC--GGGTTC
T ss_pred             CccccccCCCcCcCccccccccCc-cc-ccCCcccccccccccccc-ccc-ccccccccccccccccccccc--cccchh
Confidence            334445789999999999999954 33 889999999999999987 454 478899999999999988743  347788


Q ss_pred             CccceecCCCCcCcCCCCCCCCCCCCCcccccCCC
Q 046642           87 TSLEFFDVSDNLLTGPIPRGKQFDTFGKSSFDGNP  121 (207)
Q Consensus        87 ~~L~~l~l~~N~l~~~~p~~~~~~~l~~~~~~~n~  121 (207)
                      ++|+.+++++|.+. .++.......+..+.+.+|.
T Consensus       128 ~~L~~L~l~~n~l~-~~~~l~~~~~L~~L~l~~n~  161 (199)
T d2omxa2         128 TNLNRLELSSNTIS-DISALSGLTSLQQLNFSSNQ  161 (199)
T ss_dssp             TTCSEEECCSSCCC-CCGGGTTCTTCSEEECCSSC
T ss_pred             hhhHHhhhhhhhhc-cccccccccccccccccccc
Confidence            89999999999887 44544455666667766653

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.08  E-value=3.6e-10  Score=88.14  Aligned_cols=107  Identities=19%  Similarity=0.225  Sum_probs=92.7

Q ss_pred             hhhcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCccc
Q 046642           11 EKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLE   90 (207)
Q Consensus        11 ~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~   90 (207)
                      +..+++|+.+++++|.++ .+|..+  +++|+.|++++|...+..+..+..++.++.|++++|.+++..+..+..+++|+
T Consensus       146 ~~~l~~L~~l~l~~n~l~-~l~~~~--~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~  222 (305)
T d1xkua_         146 FQGMKKLSYIRIADTNIT-TIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLR  222 (305)
T ss_dssp             GGGCTTCCEEECCSSCCC-SCCSSC--CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCC
T ss_pred             cccccccCccccccCCcc-ccCccc--CCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccce
Confidence            455678999999999998 566543  68999999999999988899999999999999999999988888999999999


Q ss_pred             eecCCCCcCcCCCCC-CCCCCCCCcccccCCC
Q 046642           91 FFDVSDNLLTGPIPR-GKQFDTFGKSSFDGNP  121 (207)
Q Consensus        91 ~l~l~~N~l~~~~p~-~~~~~~l~~~~~~~n~  121 (207)
                      .|++++|+++ .+|. ...++.++.+++++|.
T Consensus       223 ~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~  253 (305)
T d1xkua_         223 ELHLNNNKLV-KVPGGLADHKYIQVVYLHNNN  253 (305)
T ss_dssp             EEECCSSCCS-SCCTTTTTCSSCCEEECCSSC
T ss_pred             eeeccccccc-ccccccccccCCCEEECCCCc
Confidence            9999999998 4554 4557788888898885

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.06  E-value=4.3e-13  Score=99.33  Aligned_cols=107  Identities=21%  Similarity=0.272  Sum_probs=85.6

Q ss_pred             hhhcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCccc
Q 046642           11 EKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLE   90 (207)
Q Consensus        11 ~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~   90 (207)
                      ...+++|+.|+|++|.|+ .++ .+..+++|+.|++++|.++ .+|..+..+++|+.|++++|.++ .++ .+..+++|+
T Consensus        44 l~~L~~L~~L~Ls~n~I~-~i~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~-~l~-~~~~l~~L~  118 (198)
T d1m9la_          44 LSTLKACKHLALSTNNIE-KIS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIA-SLS-GIEKLVNLR  118 (198)
T ss_dssp             HHHTTTCCEEECSEEEES-CCC-CHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECC-CHH-HHHHHHHSS
T ss_pred             HhcccccceeECcccCCC-Ccc-cccCCccccChhhcccccc-ccccccccccccccccccccccc-ccc-ccccccccc
Confidence            345789999999999998 454 4888999999999999998 66766666678999999999999 443 478889999


Q ss_pred             eecCCCCcCcCCC--CCCCCCCCCCcccccCCCC
Q 046642           91 FFDVSDNLLTGPI--PRGKQFDTFGKSSFDGNPG  122 (207)
Q Consensus        91 ~l~l~~N~l~~~~--p~~~~~~~l~~~~~~~n~~  122 (207)
                      .|++++|+++...  .....++.+..+.+.+||.
T Consensus       119 ~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l  152 (198)
T d1m9la_         119 VLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPL  152 (198)
T ss_dssp             EEEESEEECCCHHHHHHHTTTTTCSEEEECSSHH
T ss_pred             ccccccchhccccccccccCCCccceeecCCCcc
Confidence            9999999987421  2234567788888998863

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.06  E-value=6.7e-10  Score=82.31  Aligned_cols=104  Identities=28%  Similarity=0.383  Sum_probs=77.7

Q ss_pred             hhhcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCccc
Q 046642           11 EKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLE   90 (207)
Q Consensus        11 ~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~   90 (207)
                      .+.+++|+.|++++|.|++ ++ .++.+++|+.|++++|+++ .+| .+..+++|+.|++++|.+. .++ .+..++.++
T Consensus        64 l~~l~~L~~L~L~~n~i~~-l~-~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~~~~~-~~~-~l~~l~~l~  137 (210)
T d1h6ta2          64 IQYLPNVTKLFLNGNKLTD-IK-PLANLKNLGWLFLDENKVK-DLS-SLKDLKKLKSLSLEHNGIS-DIN-GLVHLPQLE  137 (210)
T ss_dssp             GGGCTTCCEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCC-CGG-GGTTCTTCCEEECTTSCCC-CCG-GGGGCTTCC
T ss_pred             HhhCCCCCEEeCCCccccC-cc-ccccCcccccccccccccc-ccc-ccccccccccccccccccc-ccc-ccccccccc
Confidence            4568899999999999985 44 3678999999999999998 455 5888999999999999887 333 466777777


Q ss_pred             eecCCCCcCcCCCCCCCCCCCCCcccccCCC
Q 046642           91 FFDVSDNLLTGPIPRGKQFDTFGKSSFDGNP  121 (207)
Q Consensus        91 ~l~l~~N~l~~~~p~~~~~~~l~~~~~~~n~  121 (207)
                      .+++++|.++. .+....+..+..+.+.+|.
T Consensus       138 ~l~~~~n~l~~-~~~~~~l~~L~~l~l~~n~  167 (210)
T d1h6ta2         138 SLYLGNNKITD-ITVLSRLTKLDTLSLEDNQ  167 (210)
T ss_dssp             EEECCSSCCCC-CGGGGGCTTCSEEECCSSC
T ss_pred             ccccccccccc-ccccccccccccccccccc
Confidence            77777777763 3333344556666666653

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.95  E-value=3.6e-10  Score=85.13  Aligned_cols=92  Identities=15%  Similarity=0.210  Sum_probs=77.5

Q ss_pred             hhhhcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCC-cccCCCCCCCCEEecC-CCCCCCCCchhhhcCC
Q 046642           10 YEKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRI-PLSLSNLTAIESMDLS-SNMLSGNIPQQLSELT   87 (207)
Q Consensus        10 ~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~-p~~~~~l~~L~~L~ls-~N~l~~~~p~~~~~l~   87 (207)
                      ...+++++++|++++|.|+...+..|.++++|++|++++|.+...+ +..|..++.++.+++. .|.+....+..|..++
T Consensus        24 P~~l~~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~  103 (242)
T d1xwdc1          24 PSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLP  103 (242)
T ss_dssp             CSCSCSCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCT
T ss_pred             CCCCCCCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccccccccccccccccccc
Confidence            3456789999999999999555567899999999999999987544 4568889999999876 4678767778899999


Q ss_pred             ccceecCCCCcCcC
Q 046642           88 SLEFFDVSDNLLTG  101 (207)
Q Consensus        88 ~L~~l~l~~N~l~~  101 (207)
                      +|+.+++++|.+..
T Consensus       104 ~L~~l~l~~~~l~~  117 (242)
T d1xwdc1         104 NLQYLLISNTGIKH  117 (242)
T ss_dssp             TCCEEEEESCCCCS
T ss_pred             cccccccchhhhcc
Confidence            99999999999874

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.94  E-value=2.5e-09  Score=79.84  Aligned_cols=77  Identities=19%  Similarity=0.330  Sum_probs=42.8

Q ss_pred             ccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCccceecCCCCcCcCCCCCCCCCCCCCc
Q 046642           35 IANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEFFDVSDNLLTGPIPRGKQFDTFGK  114 (207)
Q Consensus        35 ~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~~~~~l~~  114 (207)
                      +..+++|+.|++++|.+.. .+ .+..+++|+.|++++|.+++ ++. +..+++|++|++++|++++ ++....+..+..
T Consensus       147 ~~~~~~L~~L~l~~n~~~~-~~-~l~~l~~L~~L~Ls~n~l~~-l~~-l~~l~~L~~L~Ls~N~lt~-i~~l~~l~~L~~  221 (227)
T d1h6ua2         147 LAGLTNLQYLSIGNAQVSD-LT-PLANLSKLTTLKADDNKISD-ISP-LASLPNLIEVHLKNNQISD-VSPLANTSNLFI  221 (227)
T ss_dssp             GGGCTTCCEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCCC-CGG-GGGCTTCCEEECTTSCCCB-CGGGTTCTTCCE
T ss_pred             hcccccccccccccccccc-ch-hhcccccceecccCCCccCC-Chh-hcCCCCCCEEECcCCcCCC-CcccccCCCCCE
Confidence            4455566666666666652 22 35666666666666666663 332 5666666666666666663 332333344444


Q ss_pred             cc
Q 046642          115 SS  116 (207)
Q Consensus       115 ~~  116 (207)
                      ++
T Consensus       222 L~  223 (227)
T d1h6ua2         222 VT  223 (227)
T ss_dssp             EE
T ss_pred             EE
Confidence            33

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.92  E-value=3.6e-09  Score=78.96  Aligned_cols=105  Identities=22%  Similarity=0.426  Sum_probs=58.8

Q ss_pred             hhhcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCc----------
Q 046642           11 EKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIP----------   80 (207)
Q Consensus        11 ~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p----------   80 (207)
                      .+.+++|+.|++++|.+++..|  +..+++|+.+++++|.++ .++ .+..+++|+.++++++...+..+          
T Consensus        59 l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n~~~-~i~-~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~l  134 (227)
T d1h6ua2          59 VQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLK-NVS-AIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVL  134 (227)
T ss_dssp             GGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCS-CCG-GGTTCTTCCEEECTTSCCCCCGGGTTCTTCCEE
T ss_pred             HhcCCCCcEeecCCceeecccc--cccccccccccccccccc-ccc-cccccccccccccccccccccchhccccchhhh
Confidence            3456777777777777764332  566666666666666665 333 35556666666666554432111          


Q ss_pred             ----------hhhhcCCccceecCCCCcCcCCCCCCCCCCCCCcccccCC
Q 046642           81 ----------QQLSELTSLEFFDVSDNLLTGPIPRGKQFDTFGKSSFDGN  120 (207)
Q Consensus        81 ----------~~~~~l~~L~~l~l~~N~l~~~~p~~~~~~~l~~~~~~~n  120 (207)
                                ..+...++|+.|++++|.++. .+....+..++.+++++|
T Consensus       135 ~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~l~~l~~L~~L~Ls~n  183 (227)
T d1h6ua2         135 YLDLNQITNISPLAGLTNLQYLSIGNAQVSD-LTPLANLSKLTTLKADDN  183 (227)
T ss_dssp             ECCSSCCCCCGGGGGCTTCCEEECCSSCCCC-CGGGTTCTTCCEEECCSS
T ss_pred             hchhhhhchhhhhcccccccccccccccccc-chhhcccccceecccCCC
Confidence                      123344556667777776653 222334555666666665

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.92  E-value=7.4e-12  Score=92.49  Aligned_cols=97  Identities=19%  Similarity=0.183  Sum_probs=79.2

Q ss_pred             ccchhhhhhhcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCc--h
Q 046642            4 KGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIP--Q   81 (207)
Q Consensus         4 ~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p--~   81 (207)
                      +..+++....+++|+.|++++|.|+ .+|..+..+++|+.|++++|.++ .++ .+..+++|+.|++++|.++ .++  .
T Consensus        59 ~I~~i~~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~-~l~-~~~~l~~L~~L~L~~N~i~-~~~~~~  134 (198)
T d1m9la_          59 NIEKISSLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIA-SLS-GIEKLVNLRVLYMSNNKIT-NWGEID  134 (198)
T ss_dssp             EESCCCCHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECC-CHH-HHHHHHHSSEEEESEEECC-CHHHHH
T ss_pred             CCCCcccccCCccccChhhcccccc-ccccccccccccccccccccccc-ccc-cccccccccccccccchhc-cccccc
Confidence            3344454567899999999999998 66766666778999999999998 443 5788999999999999998 444  4


Q ss_pred             hhhcCCccceecCCCCcCcCCCC
Q 046642           82 QLSELTSLEFFDVSDNLLTGPIP  104 (207)
Q Consensus        82 ~~~~l~~L~~l~l~~N~l~~~~p  104 (207)
                      .+..+++|+.|++++|++....+
T Consensus       135 ~l~~l~~L~~L~L~~N~l~~~~~  157 (198)
T d1m9la_         135 KLAALDKLEDLLLAGNPLYNDYK  157 (198)
T ss_dssp             HHTTTTTCSEEEECSSHHHHHHC
T ss_pred             cccCCCccceeecCCCccccCcc
Confidence            68899999999999999875444

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.80  E-value=2e-08  Score=78.69  Aligned_cols=96  Identities=23%  Similarity=0.291  Sum_probs=68.6

Q ss_pred             hcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCcccee
Q 046642           13 LSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEFF   92 (207)
Q Consensus        13 ~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l   92 (207)
                      ...+++.|||++|.++ .+|+.   +++|++|++++|+++ .+|..+   .+|+.|++++|.++ .+++.   .+.|++|
T Consensus        36 ~~~~l~~LdLs~~~L~-~lp~~---~~~L~~L~Ls~N~l~-~lp~~~---~~L~~L~l~~n~l~-~l~~l---p~~L~~L  103 (353)
T d1jl5a_          36 LDRQAHELELNNLGLS-SLPEL---PPHLESLVASCNSLT-ELPELP---QSLKSLLVDNNNLK-ALSDL---PPLLEYL  103 (353)
T ss_dssp             HHHTCSEEECTTSCCS-CCCSC---CTTCSEEECCSSCCS-SCCCCC---TTCCEEECCSSCCS-CCCSC---CTTCCEE
T ss_pred             HHcCCCEEEeCCCCCC-CCCCC---CCCCCEEECCCCCCc-ccccch---hhhhhhhhhhcccc-hhhhh---ccccccc
Confidence            3467889999999998 67753   568899999999998 677653   56788888888887 44431   2357888


Q ss_pred             cCCCCcCcCCCCCCCCCCCCCcccccCCC
Q 046642           93 DVSDNLLTGPIPRGKQFDTFGKSSFDGNP  121 (207)
Q Consensus        93 ~l~~N~l~~~~p~~~~~~~l~~~~~~~n~  121 (207)
                      ++++|.+. .+|....+..+..+++.++.
T Consensus       104 ~L~~n~l~-~lp~~~~l~~L~~L~l~~~~  131 (353)
T d1jl5a_         104 GVSNNQLE-KLPELQNSSFLKIIDVDNNS  131 (353)
T ss_dssp             ECCSSCCS-SCCCCTTCTTCCEEECCSSC
T ss_pred             cccccccc-cccchhhhccceeecccccc
Confidence            88888887 55655556666666665543

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.64  E-value=5.1e-09  Score=74.39  Aligned_cols=66  Identities=24%  Similarity=0.207  Sum_probs=33.4

Q ss_pred             cCCCCCCEEECcCCcCCCCC--cccCCCCCCCCEEecCCCCCCCCCchhhhcCCccceecCCCCcCcC
Q 046642           36 ANLKGLRNLDLSNNNLQGRI--PLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSLEFFDVSDNLLTG  101 (207)
Q Consensus        36 ~~l~~L~~L~Ls~n~l~~~~--p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~  101 (207)
                      ..+++|++|+|++|+++..-  +..+..+++|+.|++++|.++...+-.+.....|+.+++++|++..
T Consensus        62 ~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~  129 (162)
T d1koha1          62 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSD  129 (162)
T ss_dssp             HHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSS
T ss_pred             HhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCc
Confidence            34556666666666665221  2233445566666666666652222122233445666666666554

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.63  E-value=8.3e-08  Score=75.02  Aligned_cols=84  Identities=27%  Similarity=0.407  Sum_probs=68.3

Q ss_pred             hhhhcccccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCCchhhhcCCcc
Q 046642           10 YEKLSNLITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNIPQQLSELTSL   89 (207)
Q Consensus        10 ~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L   89 (207)
                      +++.+++|++|++++|+|+ .+|..   +.+|+.|++++|+++ .++..   .+.|++|++++|.++ .+|. ++.+++|
T Consensus        53 lp~~~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~l~~n~l~-~l~~l---p~~L~~L~L~~n~l~-~lp~-~~~l~~L  122 (353)
T d1jl5a_          53 LPELPPHLESLVASCNSLT-ELPEL---PQSLKSLLVDNNNLK-ALSDL---PPLLEYLGVSNNQLE-KLPE-LQNSSFL  122 (353)
T ss_dssp             CCSCCTTCSEEECCSSCCS-SCCCC---CTTCCEEECCSSCCS-CCCSC---CTTCCEEECCSSCCS-SCCC-CTTCTTC
T ss_pred             CCCCCCCCCEEECCCCCCc-ccccc---hhhhhhhhhhhcccc-hhhhh---ccccccccccccccc-cccc-hhhhccc
Confidence            4466789999999999999 77865   457999999999998 55532   246999999999999 6675 5789999


Q ss_pred             ceecCCCCcCcCCC
Q 046642           90 EFFDVSDNLLTGPI  103 (207)
Q Consensus        90 ~~l~l~~N~l~~~~  103 (207)
                      +.+++++|.+....
T Consensus       123 ~~L~l~~~~~~~~~  136 (353)
T d1jl5a_         123 KIIDVDNNSLKKLP  136 (353)
T ss_dssp             CEEECCSSCCSCCC
T ss_pred             eeeccccccccccc
Confidence            99999999887443

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.40  E-value=1.2e-07  Score=70.76  Aligned_cols=90  Identities=18%  Similarity=0.094  Sum_probs=61.6

Q ss_pred             cccccEEEccCCCCCCCCchhccCCC-CCCEEECcCCcCCCCCcccCCCCCCCCEE-ecCCCCCCCCCchhhhcCCccce
Q 046642           14 SNLITAIILSNNSFVGEIPTSIANLK-GLRNLDLSNNNLQGRIPLSLSNLTAIESM-DLSSNMLSGNIPQQLSELTSLEF   91 (207)
Q Consensus        14 l~~L~~L~Ls~n~i~~~~p~~~~~l~-~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L-~ls~N~l~~~~p~~~~~l~~L~~   91 (207)
                      +..++.+..+++.+....+..|.+++ .++.|++++|+++. ++.......+++.+ ++++|.++...+..|..+++|+.
T Consensus       127 l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~-i~~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~  205 (242)
T d1xwdc1         127 LQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE-IHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVI  205 (242)
T ss_dssp             SSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE-ECTTTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSE
T ss_pred             ccccccccccccccccccccccccccccceeeecccccccc-cccccccchhhhccccccccccccccHHHhcCCCCCCE
Confidence            34455556677777755566666664 68888999999884 44443444555444 56778888444456888899999


Q ss_pred             ecCCCCcCcCCCCC
Q 046642           92 FDVSDNLLTGPIPR  105 (207)
Q Consensus        92 l~l~~N~l~~~~p~  105 (207)
                      |++++|+++ .+|.
T Consensus       206 L~Ls~N~l~-~l~~  218 (242)
T d1xwdc1         206 LDISRTRIH-SLPS  218 (242)
T ss_dssp             EECTTSCCC-CCCS
T ss_pred             EECCCCcCC-ccCH
Confidence            999999988 4554

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.21  E-value=1.4e-07  Score=66.71  Aligned_cols=103  Identities=17%  Similarity=0.063  Sum_probs=61.5

Q ss_pred             cccEEEccCCCCCCCCchhccCCCCCCEEECcCCcCCCCCcccCCCCCCCCEEecCCCCCCCCC--chhhhcCCccceec
Q 046642           16 LITAIILSNNSFVGEIPTSIANLKGLRNLDLSNNNLQGRIPLSLSNLTAIESMDLSSNMLSGNI--PQQLSELTSLEFFD   93 (207)
Q Consensus        16 ~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~--p~~~~~l~~L~~l~   93 (207)
                      ..+.|+++++...   + .+..+..+..++...+... .++..+..+++|++|++++|.|+...  +..+..+++|+.|+
T Consensus        23 ~~~~Ldls~l~~~---~-~l~~~~~~~~l~~~~~~~~-~l~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~   97 (162)
T d1koha1          23 SQQALDLKGLRSD---P-DLVAQNIDVVLNRRSSMAA-TLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILN   97 (162)
T ss_dssp             SSCCBCCCCCSSC---T-TTTTTTCCCCTTSHHHHHH-HHHHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCC
T ss_pred             hhCeeecccCCCC---c-hhhhccchhhcchhhhHhh-hhHHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccc
Confidence            3455666654422   1 2334444444444444433 34444456788888889988888532  34567788888888


Q ss_pred             CCCCcCcCCCCCC--CCCCCCCcccccCCCCCC
Q 046642           94 VSDNLLTGPIPRG--KQFDTFGKSSFDGNPGLC  124 (207)
Q Consensus        94 l~~N~l~~~~p~~--~~~~~l~~~~~~~n~~~c  124 (207)
                      +++|.++. ++..  .....+..+.+.|||..+
T Consensus        98 Ls~N~i~~-l~~l~~l~~~~L~~L~L~~Npl~~  129 (162)
T d1koha1          98 LSGNELKS-ERELDKIKGLKLEELWLDGNSLSD  129 (162)
T ss_dssp             CTTSCCCC-GGGHHHHTTCCCSSCCCTTSTTSS
T ss_pred             cccCcccc-chhhhhhhccccceeecCCCCcCc
Confidence            88888874 3321  122345667788887543

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.13  E-value=3.8e-07  Score=73.46  Aligned_cols=91  Identities=23%  Similarity=0.334  Sum_probs=67.0

Q ss_pred             hhhhcccccEEEccCCCCCC----CCchhccCCCCCCEEECcCCcCCC----CCcccCC-CCCCCCEEecCCCCCCCC--
Q 046642           10 YEKLSNLITAIILSNNSFVG----EIPTSIANLKGLRNLDLSNNNLQG----RIPLSLS-NLTAIESMDLSSNMLSGN--   78 (207)
Q Consensus        10 ~~~~l~~L~~L~Ls~n~i~~----~~p~~~~~l~~L~~L~Ls~n~l~~----~~p~~~~-~l~~L~~L~ls~N~l~~~--   78 (207)
                      ....++++++|+|++|.|+.    .+...+...++|+.|||++|.++.    .+...+. ...+|+.|++++|.++..  
T Consensus        22 l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~it~~~~  101 (460)
T d1z7xw1          22 LLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGC  101 (460)
T ss_dssp             HHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGH
T ss_pred             HHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcCCCCCCEEECCCCCcccccc
Confidence            34567889999999999873    234456788999999999998852    1222332 235799999999998743  


Q ss_pred             --CchhhhcCCccceecCCCCcCc
Q 046642           79 --IPQQLSELTSLEFFDVSDNLLT  100 (207)
Q Consensus        79 --~p~~~~~l~~L~~l~l~~N~l~  100 (207)
                        ++..+..+++|+.|++++|.++
T Consensus       102 ~~l~~~l~~~~~L~~L~L~~N~i~  125 (460)
T d1z7xw1         102 GVLSSTLRTLPTLQELHLSDNLLG  125 (460)
T ss_dssp             HHHHHHTTSCTTCCEEECCSSBCH
T ss_pred             ccccchhhccccccccccccccch
Confidence              3455677889999999999875

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.04  E-value=1.1e-07  Score=76.68  Aligned_cols=107  Identities=17%  Similarity=0.196  Sum_probs=75.5

Q ss_pred             ccccEEEccCCCCCCC-CchhccCCCCCCEEECcCCcCCC----CCcccCCCCCCCCEEecCCCCCCCC----Cchhhh-
Q 046642           15 NLITAIILSNNSFVGE-IPTSIANLKGLRNLDLSNNNLQG----RIPLSLSNLTAIESMDLSSNMLSGN----IPQQLS-   84 (207)
Q Consensus        15 ~~L~~L~Ls~n~i~~~-~p~~~~~l~~L~~L~Ls~n~l~~----~~p~~~~~l~~L~~L~ls~N~l~~~----~p~~~~-   84 (207)
                      .+|+.||+++|++++. +...+..+++++.|+|++|.++.    .+...+...++|+.||+++|.|+..    +...+. 
T Consensus         2 ~~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~   81 (460)
T d1z7xw1           2 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT   81 (460)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred             CCCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhc
Confidence            4689999999999852 24446678999999999999872    2345567889999999999998621    111121 


Q ss_pred             cCCccceecCCCCcCcCC----CCC-CCCCCCCCcccccCCC
Q 046642           85 ELTSLEFFDVSDNLLTGP----IPR-GKQFDTFGKSSFDGNP  121 (207)
Q Consensus        85 ~l~~L~~l~l~~N~l~~~----~p~-~~~~~~l~~~~~~~n~  121 (207)
                      ...+|+.|++++|.++..    ++. ......+..+++.+|.
T Consensus        82 ~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~  123 (460)
T d1z7xw1          82 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL  123 (460)
T ss_dssp             TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSB
T ss_pred             CCCCCCEEECCCCCccccccccccchhhcccccccccccccc
Confidence            234799999999998742    111 2234567777777765

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.96  E-value=2.9e-06  Score=65.06  Aligned_cols=109  Identities=18%  Similarity=0.211  Sum_probs=61.7

Q ss_pred             hhhcccccEEEccCC-CCCCC-CchhccC-CCCCCEEECcCCc--CCCC-CcccCCCCCCCCEEecCCC-CCCCCCchhh
Q 046642           11 EKLSNLITAIILSNN-SFVGE-IPTSIAN-LKGLRNLDLSNNN--LQGR-IPLSLSNLTAIESMDLSSN-MLSGNIPQQL   83 (207)
Q Consensus        11 ~~~l~~L~~L~Ls~n-~i~~~-~p~~~~~-l~~L~~L~Ls~n~--l~~~-~p~~~~~l~~L~~L~ls~N-~l~~~~p~~~   83 (207)
                      ...+++|++|+++++ .++.. +...+.. .++|+.|+++++.  ++.. +......+++|+.|++++| .+++.....+
T Consensus       117 ~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l  196 (284)
T d2astb2         117 LSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEF  196 (284)
T ss_dssp             HHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGG
T ss_pred             hHHHHhccccccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhh
Confidence            345678888888875 34321 1222222 3678888887643  3211 2222345677888888775 4665555667


Q ss_pred             hcCCccceecCCCC-cCcCCCC-CCCCCCCCCcccccC
Q 046642           84 SELTSLEFFDVSDN-LLTGPIP-RGKQFDTFGKSSFDG  119 (207)
Q Consensus        84 ~~l~~L~~l~l~~N-~l~~~~p-~~~~~~~l~~~~~~~  119 (207)
                      ..+++|++|+++++ .++.... .....+.++.+++.|
T Consensus       197 ~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~  234 (284)
T d2astb2         197 FQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFG  234 (284)
T ss_dssp             GGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTT
T ss_pred             cccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeC
Confidence            77788888888774 4543211 112344555555554

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.90  E-value=2.5e-05  Score=59.59  Aligned_cols=88  Identities=22%  Similarity=0.240  Sum_probs=66.7

Q ss_pred             hhhhcccccEEEccCC--CCCCC-CchhccCCCCCCEEECcCCc-CCCCCcccCCCCCCCCEEecCCC-CCCCCCchhhh
Q 046642           10 YEKLSNLITAIILSNN--SFVGE-IPTSIANLKGLRNLDLSNNN-LQGRIPLSLSNLTAIESMDLSSN-MLSGNIPQQLS   84 (207)
Q Consensus        10 ~~~~l~~L~~L~Ls~n--~i~~~-~p~~~~~l~~L~~L~Ls~n~-l~~~~p~~~~~l~~L~~L~ls~N-~l~~~~p~~~~   84 (207)
                      +....++|+.|+++++  .++.. +...+..+++|+.|++++|. ++......+..+++|++|+++++ .++......+.
T Consensus       143 ~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~  222 (284)
T d2astb2         143 VAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELG  222 (284)
T ss_dssp             HHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGG
T ss_pred             hcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHh
Confidence            3445678999999875  34422 33334568999999999864 67666778888999999999994 67755556788


Q ss_pred             cCCccceecCCCC
Q 046642           85 ELTSLEFFDVSDN   97 (207)
Q Consensus        85 ~l~~L~~l~l~~N   97 (207)
                      ++++|+.|+++++
T Consensus       223 ~~~~L~~L~l~~~  235 (284)
T d2astb2         223 EIPTLKTLQVFGI  235 (284)
T ss_dssp             GCTTCCEEECTTS
T ss_pred             cCCCCCEEeeeCC
Confidence            8999999999886

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=97.81  E-value=3.1e-06  Score=66.37  Aligned_cols=63  Identities=21%  Similarity=0.382  Sum_probs=30.1

Q ss_pred             cccccEEEccCCCCCCC-----CchhccCCCCCCEEECcCCcCCCC----CcccCCCCCCCCEEecCCCCCC
Q 046642           14 SNLITAIILSNNSFVGE-----IPTSIANLKGLRNLDLSNNNLQGR----IPLSLSNLTAIESMDLSSNMLS   76 (207)
Q Consensus        14 l~~L~~L~Ls~n~i~~~-----~p~~~~~l~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~ls~N~l~   76 (207)
                      .+.++.|+|++|.|+..     +...+...++|+.|++++|.++..    +...+...++|+.|++++|.++
T Consensus       185 ~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~  256 (344)
T d2ca6a1         185 HRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLS  256 (344)
T ss_dssp             CTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCC
T ss_pred             hhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccC
Confidence            34455555555555421     112234445555555555554311    2233444555555555555554

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=97.75  E-value=3e-06  Score=66.40  Aligned_cols=89  Identities=17%  Similarity=0.324  Sum_probs=65.6

Q ss_pred             hhcccccEEEccCCCCCCC----CchhccCCCCCCEEECcCCcCCCCCcc----cCC--CCCCCCEEecCCCCCCCC---
Q 046642           12 KLSNLITAIILSNNSFVGE----IPTSIANLKGLRNLDLSNNNLQGRIPL----SLS--NLTAIESMDLSSNMLSGN---   78 (207)
Q Consensus        12 ~~l~~L~~L~Ls~n~i~~~----~p~~~~~l~~L~~L~Ls~n~l~~~~p~----~~~--~l~~L~~L~ls~N~l~~~---   78 (207)
                      ...++|+.|++++|.++..    +...+...++|+.|++++|.++..-..    .+.  ....|+.|++++|.++..   
T Consensus       212 ~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~  291 (344)
T d2ca6a1         212 AYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVR  291 (344)
T ss_dssp             GGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHH
T ss_pred             cchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHH
Confidence            3467899999999998632    345577889999999999998743222    222  236799999999998732   


Q ss_pred             -Cchhhh-cCCccceecCCCCcCc
Q 046642           79 -IPQQLS-ELTSLEFFDVSDNLLT  100 (207)
Q Consensus        79 -~p~~~~-~l~~L~~l~l~~N~l~  100 (207)
                       +...+. ++++|+.|++++|.+.
T Consensus       292 ~l~~~l~~~~~~L~~L~l~~N~~~  315 (344)
T d2ca6a1         292 TLKTVIDEKMPDLLFLELNGNRFS  315 (344)
T ss_dssp             HHHHHHHHHCTTCCEEECTTSBSC
T ss_pred             HHHHHHHccCCCCCEEECCCCcCC
Confidence             222332 5788999999999986

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.39  E-value=3.5e-05  Score=54.16  Aligned_cols=88  Identities=13%  Similarity=0.184  Sum_probs=61.6

Q ss_pred             hcccccEEEccCC-CCCCC----CchhccCCCCCCEEECcCCcCCC----CCcccCCCCCCCCEEecCCCCCCCCC----
Q 046642           13 LSNLITAIILSNN-SFVGE----IPTSIANLKGLRNLDLSNNNLQG----RIPLSLSNLTAIESMDLSSNMLSGNI----   79 (207)
Q Consensus        13 ~l~~L~~L~Ls~n-~i~~~----~p~~~~~l~~L~~L~Ls~n~l~~----~~p~~~~~l~~L~~L~ls~N~l~~~~----   79 (207)
                      -.+.|+.|+|+++ .++..    +-..+...++|+.|+|++|.+..    .+...+...+.|+.|++++|.++..-    
T Consensus        13 n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l   92 (167)
T d1pgva_          13 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL   92 (167)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred             CCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHH
Confidence            3577999999974 56532    22245667889999999998862    22234455688999999999987421    


Q ss_pred             chhhhcCCccceecCCCCcCc
Q 046642           80 PQQLSELTSLEFFDVSDNLLT  100 (207)
Q Consensus        80 p~~~~~l~~L~~l~l~~N~l~  100 (207)
                      -..+...++|+.|++++|.+.
T Consensus        93 ~~aL~~n~sL~~L~l~~n~~~  113 (167)
T d1pgva_          93 LRSTLVTQSIVEFKADNQRQS  113 (167)
T ss_dssp             HHHTTTTCCCSEEECCCCSSC
T ss_pred             HHHHHhCCcCCEEECCCCcCC
Confidence            123555678999999988655

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.16  E-value=0.00016  Score=50.62  Aligned_cols=85  Identities=20%  Similarity=0.111  Sum_probs=61.2

Q ss_pred             cccccEEEccCCCCCCC----CchhccCCCCCCEEECcCCcCCCC----CcccCCCCCCCCEEecCCCCCCCC-------
Q 046642           14 SNLITAIILSNNSFVGE----IPTSIANLKGLRNLDLSNNNLQGR----IPLSLSNLTAIESMDLSSNMLSGN-------   78 (207)
Q Consensus        14 l~~L~~L~Ls~n~i~~~----~p~~~~~l~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~ls~N~l~~~-------   78 (207)
                      .++|+.|+|++|.+...    +...+...+.|+.|+|++|.++..    +-..+..-++|+.|++++|.+...       
T Consensus        43 n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~  122 (167)
T d1pgva_          43 SKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMD  122 (167)
T ss_dssp             CSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHH
T ss_pred             CCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCCCccHHHHHH
Confidence            35699999999998732    233445568899999999998732    223566778999999999987632       


Q ss_pred             CchhhhcCCccceecCCCCc
Q 046642           79 IPQQLSELTSLEFFDVSDNL   98 (207)
Q Consensus        79 ~p~~~~~l~~L~~l~l~~N~   98 (207)
                      +...+...++|+.++++.+.
T Consensus       123 l~~~L~~n~sL~~l~l~~~~  142 (167)
T d1pgva_         123 MMMAIEENESLLRVGISFAS  142 (167)
T ss_dssp             HHHHHHHCSSCCEEECCCCC
T ss_pred             HHHHHHhCCCccEeeCcCCC
Confidence            22344556788888887654

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=95.50  E-value=0.0019  Score=44.64  Aligned_cols=88  Identities=15%  Similarity=0.184  Sum_probs=56.7

Q ss_pred             hcccccEEEccC-CCCCCC----CchhccCCCCCCEEECcCCcCCCC----CcccCCCCCCCCEEecCCCCCCCC----C
Q 046642           13 LSNLITAIILSN-NSFVGE----IPTSIANLKGLRNLDLSNNNLQGR----IPLSLSNLTAIESMDLSSNMLSGN----I   79 (207)
Q Consensus        13 ~l~~L~~L~Ls~-n~i~~~----~p~~~~~l~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~ls~N~l~~~----~   79 (207)
                      -.+.|+.|++++ +.++..    +-..+...++|+.|++++|.++..    +-..+....+++.+++++|.++..    +
T Consensus        15 ~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l   94 (166)
T d1io0a_          15 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILAL   94 (166)
T ss_dssp             TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHH
T ss_pred             cCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHH
Confidence            347899999987 456532    223355778899999999988632    222345567889999999887632    1


Q ss_pred             chhhhcCCccceecC--CCCcCc
Q 046642           80 PQQLSELTSLEFFDV--SDNLLT  100 (207)
Q Consensus        80 p~~~~~l~~L~~l~l--~~N~l~  100 (207)
                      -..+...++|+.+++  ++|.+.
T Consensus        95 ~~~l~~~~~L~~l~L~l~~n~i~  117 (166)
T d1io0a_          95 VEALQSNTSLIELRIDNQSQPLG  117 (166)
T ss_dssp             HHGGGGCSSCCEEECCCCSSCCC
T ss_pred             HHHHHhCccccEEeeccCCCcCc
Confidence            134556677776444  455553

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=95.24  E-value=0.002  Score=44.47  Aligned_cols=87  Identities=15%  Similarity=0.188  Sum_probs=61.0

Q ss_pred             hcccccEEEccCCCCCCCCc----hhccCCCCCCEEECcCCcCCCC----CcccCCCCCCCCEEec--CCCCCCC----C
Q 046642           13 LSNLITAIILSNNSFVGEIP----TSIANLKGLRNLDLSNNNLQGR----IPLSLSNLTAIESMDL--SSNMLSG----N   78 (207)
Q Consensus        13 ~l~~L~~L~Ls~n~i~~~~p----~~~~~l~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~l--s~N~l~~----~   78 (207)
                      ..++|+.|++++|.++...-    ..+...+.++.+++++|.+...    +-..+...++|+.++|  +.|.+..    .
T Consensus        44 ~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~  123 (166)
T d1io0a_          44 TNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEME  123 (166)
T ss_dssp             TCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHH
T ss_pred             cCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHHHHHHhCccccEEeeccCCCcCcHHHHHH
Confidence            45679999999999874322    2345678999999999998632    2245667788987655  5666652    2


Q ss_pred             CchhhhcCCccceecCCCCcC
Q 046642           79 IPQQLSELTSLEFFDVSDNLL   99 (207)
Q Consensus        79 ~p~~~~~l~~L~~l~l~~N~l   99 (207)
                      +.+.+...++|+.|+++.+..
T Consensus       124 La~~L~~n~~L~~L~l~~~~~  144 (166)
T d1io0a_         124 IANMLEKNTTLLKFGYHFTQQ  144 (166)
T ss_dssp             HHHHHHHCSSCCEEECCCSSH
T ss_pred             HHHHHHhCCCcCEEeCcCCCC
Confidence            333456788999999887654