Citrus Sinensis ID: 046651
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 392 | 2.2.26 [Sep-21-2011] | |||||||
| P32483 | 723 | Para-aminobenzoate syntha | yes | no | 0.494 | 0.268 | 0.403 | 9e-44 | |
| Q08654 | 589 | Anthranilate synthase com | yes | no | 0.497 | 0.331 | 0.344 | 1e-31 | |
| Q5V632 | 190 | Anthranilate synthase com | no | no | 0.461 | 0.952 | 0.361 | 1e-30 | |
| P00902 | 194 | Anthranilate synthase com | yes | no | 0.482 | 0.974 | 0.356 | 2e-30 | |
| P26923 | 196 | Anthranilate synthase com | yes | no | 0.469 | 0.938 | 0.364 | 3e-29 | |
| O27693 | 196 | Anthranilate synthase com | yes | no | 0.479 | 0.959 | 0.333 | 8e-29 | |
| Q06129 | 195 | Anthranilate synthase com | yes | no | 0.466 | 0.938 | 0.361 | 1e-28 | |
| Q5V214 | 207 | Anthranilate synthase com | no | no | 0.471 | 0.893 | 0.337 | 9e-28 | |
| Q1XDC5 | 189 | Anthranilate synthase com | N/A | no | 0.469 | 0.973 | 0.357 | 1e-27 | |
| P28819 | 194 | Para-aminobenzoate/anthra | yes | no | 0.466 | 0.943 | 0.349 | 2e-27 |
| >sp|P32483|PABS_STRGR Para-aminobenzoate synthase OS=Streptomyces griseus GN=pab PE=3 SV=1 | Back alignment and function desciption |
|---|
Score = 177 bits (450), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 104/258 (40%), Positives = 134/258 (51%), Gaps = 64/258 (24%)
Query: 5 VRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGP 64
+RTLL+DNYDS+TYN++ LS NG P V+RND+ WR +AFDN+V+SPGP
Sbjct: 1 MRTLLVDNYDSFTYNLFHYLSRANGREPEVIRNDDPAWRPGLL-----DAFDNVVLSPGP 55
Query: 65 GSPACPEDIGICLRVLLECWDVPILGVCLGHQALGFVHGADIVHAPEPVHGRLSEIVHNG 124
G+P P D G+C R+ E +P+LGVCLGHQ + HGA + APEP HGR S + H+G
Sbjct: 56 GTPHRPADFGLCARIAEE-GRLPVLGVCLGHQGMALAHGARVGRAPEPRHGRTSAVRHDG 114
Query: 125 DRLFHDIPSGQNSGFKVVRYHSLIIDADSLPKELIPIAWSNSADGFSYLGTLQSGEIPDA 184
LF +P +VVRYHSL + LP EL AWS DG
Sbjct: 115 TGLFEGLP----QPLEVVRYHSLAV--TELPPELEATAWSE--DG--------------- 151
Query: 185 YQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGIMHSTRPHYGVQFHPESIATC 244
VLM + H T P +GVQFHPESI T
Sbjct: 152 -----------------------------------VLMALRHRTLPLWGVQFHPESIGTQ 176
Query: 245 YGSKILRNFREITEDYWK 262
G ++L NFR++TE + +
Sbjct: 177 DGHRLLANFRDLTERHGR 194
|
Catalyzes the biosynthesis of 4-amino-4-deoxychorismate (ADC) from chorismate and glutamine. Streptomyces griseus (taxid: 1911) EC: 2EC: .EC: 6EC: .EC: 1EC: .EC: 8EC: 5 |
| >sp|Q08654|TRPG_THEMA Anthranilate synthase component II OS=Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099) GN=trpGD PE=3 SV=2 | Back alignment and function description |
|---|
Score = 137 bits (345), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 90/261 (34%), Positives = 124/261 (47%), Gaps = 66/261 (25%)
Query: 6 RTLLIDNYDSYTYNIYQELSTINGVPPV-VVRNDEWTWRDICRYLYEENAFDNIVISPGP 64
R ++IDNYDS+ YNI Q + + + V RNDE T +I E +IVISPGP
Sbjct: 46 RVIVIDNYDSFVYNIVQYIGEVEPDCEIEVFRNDEITIEEI-----ERKNPTHIVISPGP 100
Query: 65 GSPACPEDIGICLRVLLE-CWDVPILGVCLGHQALGFVHGADIVHAPEPVHGRLSEIVHN 123
G P E+ GI + V+ VPILGVCLGHQ +G+ G IVHA +HG+ S+IVHN
Sbjct: 101 GRP---EEAGISVDVVRHFSGKVPILGVCLGHQVIGYAFGGKIVHAKRILHGKTSKIVHN 157
Query: 124 GDRLFHDIPSGQNSGFKVVRYHSLIIDADSLPKELIPIAWSNSADGFSYLGTLQSGEIPD 183
G +F SG + RYHSL+++ SLP+ L A S+ +
Sbjct: 158 GKGVF----SGVKNPLVATRYHSLVVEEASLPEVLEITAKSDDGE--------------- 198
Query: 184 AYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGIMHSTRPHYGVQFHPESIAT 243
+MG+ H P +GVQFHPES+ T
Sbjct: 199 -------------------------------------IMGLQHKEHPTFGVQFHPESVLT 221
Query: 244 CYGSKILRNFREITEDYWKRL 264
G +I++NF I + K++
Sbjct: 222 EEGKRIIKNFLNIQDIQVKKV 242
|
Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099) (taxid: 243274) EC: 2 EC: . EC: 4 EC: . EC: 2 EC: . EC: 1 EC: 8 |
| >sp|Q5V632|TRPG2_HALMA Anthranilate synthase component II OS=Haloarcula marismortui (strain ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809) GN=trpG2 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 134 bits (338), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 89/246 (36%), Positives = 115/246 (46%), Gaps = 65/246 (26%)
Query: 8 LLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSP 67
L+IDNYDS+ YN+ Q + + V V RND I E D IV+SPGPG+P
Sbjct: 3 LIIDNYDSFAYNLVQYVGEFDDV--TVRRNDAIDVEGI-----HELDPDGIVVSPGPGTP 55
Query: 68 ACPEDIGICLRVLLECWDVPILGVCLGHQALGFVHGADIVHAPEPVHGRLSEIVHNGDRL 127
A + G+ + V E + P LGVCLGHQAL HG + HAP VHG+ SE+ H+G RL
Sbjct: 56 A---EAGVSIDVFAET-EYPALGVCLGHQALCAAHGTPVGHAPSVVHGKPSEVRHDGTRL 111
Query: 128 FHDIPSGQNSGFKVVRYHSLIIDADSLPKELIPIAWSNSADGFSYLGTLQSGEIPDAYQS 187
+ G + F+V RYHSL + A LP L A +N G
Sbjct: 112 Y----DGVDDPFEVGRYHSLAVKASELPDTLSETAHTNDEQGI----------------- 150
Query: 188 QSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGIMHSTRPHYGVQFHPESIATCYGS 247
+MG+ H+ +PH GVQFHPESI T G
Sbjct: 151 ---------------------------------VMGVQHAEKPHIGVQFHPESILTDAGK 177
Query: 248 KILRNF 253
+I+ NF
Sbjct: 178 QIVENF 183
|
Haloarcula marismortui (strain ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809) (taxid: 272569) EC: 4 EC: . EC: 1 EC: . EC: 3 EC: . EC: 2 EC: 7 |
| >sp|P00902|TRPG_ACIAD Anthranilate synthase component 2 OS=Acinetobacter sp. (strain ADP1) GN=trpG PE=4 SV=1 | Back alignment and function description |
|---|
Score = 133 bits (335), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 89/250 (35%), Positives = 122/250 (48%), Gaps = 61/250 (24%)
Query: 8 LLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSP 67
L+IDNYDS+TYNI Q +N VVRND+ T DI R+ + +V+ PGP SP
Sbjct: 3 LMIDNYDSFTYNIVQYFGELNQ-DVKVVRNDQVTLEDIERWQPK-----YLVVGPGPCSP 56
Query: 68 ACPEDIGICLRVLLE-CWDVPILGVCLGHQALGFVHGADIVHAPEPVHGRLSEIVHNGDR 126
+ GI + + +P+LGVCLGHQA+G G +I+ A +HGRLS++ H
Sbjct: 57 T---EAGISIPAIHHFAGRIPLLGVCLGHQAIGQAFGGNIIRAKTVMHGRLSDMYHTDKG 113
Query: 127 LFHDIPSGQNSGFKVVRYHSLIIDADSLPKELIPIAWSNSADGFSYLGTLQSGEIPDAYQ 186
+F ++P S F RYHSL+I+ +SLP+ L W+N DG
Sbjct: 114 IFSNLP----SPFSATRYHSLVIEQESLPECLEVTCWTNQNDG----------------- 152
Query: 187 SQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGIMHSTRPHYGVQFHPESIATCYG 246
E +MG+ H T P GVQFHPESI + +G
Sbjct: 153 ------------------------------SIEEIMGVKHKTLPVEGVQFHPESILSQHG 182
Query: 247 SKILRNFREI 256
+I +NF EI
Sbjct: 183 HQIFKNFLEI 192
|
Acinetobacter sp. (strain ADP1) (taxid: 62977) EC: 4 EC: . EC: 1 EC: . EC: 3 EC: . EC: 2 EC: 7 |
| >sp|P26923|TRPG_METTM Anthranilate synthase component II OS=Methanothermobacter marburgensis (strain DSM 2133 / 14651 / NBRC 100331 / OCM 82 / Marburg) GN=trpG PE=4 SV=1 | Back alignment and function description |
|---|
Score = 129 bits (325), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 91/250 (36%), Positives = 118/250 (47%), Gaps = 66/250 (26%)
Query: 8 LLIDNYDSYTYNIYQELSTI----NGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPG 63
L+IDNYDS+T+N+YQ I + +VVRNDE D R L E I+ISPG
Sbjct: 6 LIIDNYDSFTHNLYQMAGEIMMEMDSADIMVVRNDEVDI-DYVRGLDPER----IIISPG 60
Query: 64 PGSPACPEDIGICLRVLLECWDVPILGVCLGHQALGFVHGADIVHAPEPVHGRLSEIVHN 123
PG+P ED GIC V+ E D PILGVCLGHQ + F + +V EPVHG++SE+ H+
Sbjct: 61 PGNPIKREDFGICSEVIGEFTDRPILGVCLGHQGI-FHYFGGVVGYGEPVHGKISEVFHD 119
Query: 124 GDRLFHDIPSGQNSGFKVVRYHSLIIDADSLPKELIPIAWSNSADGFSYLGTLQSGEIPD 183
G LF +P + F+ RYHSL + +P+++ L S PD
Sbjct: 120 GSELFRGVP----NPFRATRYHSLRCECSGVPEDI-----------------LVSASAPD 158
Query: 184 AYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGIMHSTRPHYGVQFHPESIAT 243
+M I H P YG+QFHPES T
Sbjct: 159 G-----------------------------------TIMAIRHRQYPVYGLQFHPESAGT 183
Query: 244 CYGSKILRNF 253
+G IL NF
Sbjct: 184 PHGRDILENF 193
|
Methanothermobacter marburgensis (strain DSM 2133 / 14651 / NBRC 100331 / OCM 82 / Marburg) (taxid: 79929) EC: 4 EC: . EC: 1 EC: . EC: 3 EC: . EC: 2 EC: 7 |
| >sp|O27693|TRPG_METTH Anthranilate synthase component II OS=Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) GN=trpG PE=4 SV=1 | Back alignment and function description |
|---|
Score = 128 bits (321), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 85/255 (33%), Positives = 121/255 (47%), Gaps = 67/255 (26%)
Query: 4 FVRTLLIDNYDSYTYNIYQ---ELSTINGVPP--VVVRNDEWTWRDICRYLYEENAFDNI 58
V L+IDNYDS+T+N+YQ E+ G+ +V+RNDE D+ R L E I
Sbjct: 1 MVVILIIDNYDSFTHNLYQLAGEILRDEGMDEEIMVLRNDEARISDL-RALDPEK----I 55
Query: 59 VISPGPGSPACPEDIGICLRVLLECWDVPILGVCLGHQALGFVHGADIVHAPEPVHGRLS 118
+ISPGPG+P+ D G+C+ V+ E D P+LGVCLGHQ + G + EPVHG++
Sbjct: 56 IISPGPGNPSRRSDFGVCMDVIGEFTDRPLLGVCLGHQGIFHAFGGRVDQG-EPVHGKIV 114
Query: 119 EIVHNGDRLFHDIPSGQNSGFKVVRYHSLIIDADSLPKELIPIAWSNSADGFSYLGTLQS 178
E+ H+G LF D+P + F+ RYHSL+ + P ++ A ++
Sbjct: 115 EVFHDGSELFRDVP----NPFRATRYHSLVCRPEDTPADIEVTAVTSD------------ 158
Query: 179 GEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGIMHSTRPHYGVQFHP 238
E++M I H P YG+QFHP
Sbjct: 159 ----------------------------------------EIIMAIKHREYPVYGLQFHP 178
Query: 239 ESIATCYGSKILRNF 253
ES T G ++RNF
Sbjct: 179 ESAGTPSGRTVIRNF 193
|
Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) (taxid: 187420) EC: 4 EC: . EC: 1 EC: . EC: 3 EC: . EC: 2 EC: 7 |
| >sp|Q06129|TRPG_SULSO Anthranilate synthase component II OS=Sulfolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) GN=trpG PE=1 SV=2 | Back alignment and function description |
|---|
Score = 127 bits (320), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 91/252 (36%), Positives = 118/252 (46%), Gaps = 69/252 (27%)
Query: 7 TLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGS 66
TL+IDNYDS+ YNI Q + + G P+V+RNDE + + I E D I+ISPGPG+
Sbjct: 4 TLIIDNYDSFVYNIAQIVGEL-GSYPIVIRNDEISIKGI-----ERIDPDRIIISPGPGT 57
Query: 67 PACPEDIGICLRVLLECWD-VPILGVCLGHQALGFVHGADIVHAPEPVHGRLSEIVHNGD 125
P EDIG+ L V+ PILGVCLGHQA+G+ GA I A + HG++S I+
Sbjct: 58 PEKREDIGVSLDVIKYLGKRTPILGVCLGHQAIGYAFGAKIRRARKVFHGKISNII---- 113
Query: 126 RLFHDIP----SGQNSGFKVVRYHSLIIDADSLPKELIPIAWSNSADGFSYLGTLQSGEI 181
L ++ P G FK RYHSL++D P I
Sbjct: 114 -LVNNSPLSLYYGIAKEFKATRYHSLVVDEVHRPL------------------------I 148
Query: 182 PDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGIMHSTRPHYGVQFHPESI 241
DA ++ + +M I H P YGVQFHPES+
Sbjct: 149 VDAISAEDNE-----------------------------IMAIHHEEYPIYGVQFHPESV 179
Query: 242 ATCYGSKILRNF 253
T G KIL NF
Sbjct: 180 GTSLGYKILYNF 191
|
Sulfolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) (taxid: 273057) EC: 4 EC: . EC: 1 EC: . EC: 3 EC: . EC: 2 EC: 7 |
| >sp|Q5V214|TRPG1_HALMA Anthranilate synthase component II OS=Haloarcula marismortui (strain ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809) GN=trpG1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 124 bits (312), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 85/252 (33%), Positives = 118/252 (46%), Gaps = 67/252 (26%)
Query: 5 VRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFD--NIVISP 62
+R L +DN+DS+TYN+ + +S VVRN L + AFD I++SP
Sbjct: 16 LRVLFVDNFDSFTYNLVEYVS--EHAETEVVRN--------TASLDDVEAFDPDAIILSP 65
Query: 63 GPGSPACPEDIGICLRVLLECW-DVPILGVCLGHQALGFVHGADIVHAPEPVHGRLSEIV 121
GPG P D+G+ L VL E DVP LGVCLG ++ + +G I APEP+HG+ I
Sbjct: 66 GPGHPKNERDVGVTLDVLREVSPDVPTLGVCLGLESAVYAYGGTIGRAPEPIHGKAFPID 125
Query: 122 HNGDRLFHDIPSGQNSGFKVVRYHSLIIDADSLPKELIPIAWSNSADGFSYLGTLQSGEI 181
H+G +F +G GF+ RYHSLI AD +P+E + A + + DG
Sbjct: 126 HDGKGVF----AGLEQGFQGGRYHSLI--ADDVPEEFVVSATTETEDG------------ 167
Query: 182 PDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGIMHSTRPHYGVQFHPESI 241
E++MG+ H P VQFHPES+
Sbjct: 168 ------------------------------------TELVMGVRHREHPIEAVQFHPESV 191
Query: 242 ATCYGSKILRNF 253
T G ++RNF
Sbjct: 192 LTAVGHDVIRNF 203
|
Haloarcula marismortui (strain ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809) (taxid: 272569) EC: 4 EC: . EC: 1 EC: . EC: 3 EC: . EC: 2 EC: 7 |
| >sp|Q1XDC5|TRPG_PORYE Anthranilate synthase component II OS=Porphyra yezoensis GN=trpG PE=4 SV=1 | Back alignment and function description |
|---|
Score = 124 bits (311), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 89/249 (35%), Positives = 124/249 (49%), Gaps = 65/249 (26%)
Query: 8 LLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSP 67
L+IDNYDS+TYN+ Q + + G +V RNDE I ++ + I+ISPGPG P
Sbjct: 3 LIIDNYDSFTYNLAQCVGEL-GYDVLVCRNDEIDIPTI-----KQLNPNKIIISPGPGKP 56
Query: 68 ACPEDIGICLRVLLECWD-VPILGVCLGHQALGFVHGADIVHAPEPVHGRLSEIVHNGDR 126
+ D GI L V+ D +PILGVCLGHQ++G+++G I+ E +HG+ S+I HN +
Sbjct: 57 S---DSGISLDVISSFSDSIPILGVCLGHQSIGYLNGGRIIKVSEIMHGKTSKIYHNNED 113
Query: 127 LFHDIPSGQNSGFKVVRYHSLIIDADSLPKELIPIAWSNSADGFSYLGTLQSGEIPDAYQ 186
LF +P + F RYHSLIID + P L AW
Sbjct: 114 LFKTLP----NPFIATRYHSLIIDNLNFPSSLAITAW----------------------- 146
Query: 187 SQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGIMHSTRPHYGVQFHPESIATCYG 246
+ I++ + RH N+M R G+QFHPES+ T YG
Sbjct: 147 --TENNIIM----------ACRHK--DNQMLR--------------GIQFHPESLWTFYG 178
Query: 247 SKILRNFRE 255
++LRNF E
Sbjct: 179 QQLLRNFLE 187
|
Porphyra yezoensis (taxid: 2788) EC: 4 EC: . EC: 1 EC: . EC: 3 EC: . EC: 2 EC: 7 |
| >sp|P28819|PABA_BACSU Para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II OS=Bacillus subtilis (strain 168) GN=pabA PE=4 SV=1 | Back alignment and function description |
|---|
Score = 123 bits (309), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 87/249 (34%), Positives = 117/249 (46%), Gaps = 66/249 (26%)
Query: 8 LLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSP 67
L+IDNYDS+TYN+ Q L + G VV RND T +I EE + D ++ISPGP SP
Sbjct: 3 LMIDNYDSFTYNLVQYLGEL-GEELVVKRNDSITIDEI-----EELSPDFLMISPGPCSP 56
Query: 68 ACPEDIGICLRVLLE-CWDVPILGVCLGHQALGFVHGADIVHAPEPVHGRLSEIVHNGDR 126
++ GI L + +PI GVCLGHQ++ V G D+V A +HG+ S+I H+G
Sbjct: 57 ---DEAGISLEAIKHFAGKIPIFGVCLGHQSIAQVFGGDVVRAERLMHGKTSDIEHDGKT 113
Query: 127 LFHDIPSGQNSGFKVVRYHSLIIDADSLPKELIPIAWSNSADGFSYLGTLQSGEIPDAYQ 186
+F G + RYHSLI+ ++LP F+ + GEI
Sbjct: 114 IF----EGLKNPLVATRYHSLIVKPETLPS------------CFTVTAQTKEGEI----- 152
Query: 187 SQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGIMHSTRPHYGVQFHPESIATCYG 246
M I H+ P GVQFHPESI T +G
Sbjct: 153 -----------------------------------MAIRHNDLPIEGVQFHPESIMTSFG 177
Query: 247 SKILRNFRE 255
++LRNF E
Sbjct: 178 KEMLRNFIE 186
|
Catalyzes the biosynthesis of 4-amino-4-deoxychorismate (ADC) from chorismate and glutamine and also involved in the synthesis of anthranilate. Bacillus subtilis (strain 168) (taxid: 224308) EC: 4 EC: . EC: 1 EC: . EC: 3 EC: . EC: 2 EC: 7 |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 392 | ||||||
| 359486886 | 909 | PREDICTED: para-aminobenzoate synthase-l | 0.928 | 0.400 | 0.623 | 1e-132 | |
| 255577381 | 914 | p-aminobenzoate synthase, putative [Rici | 0.956 | 0.410 | 0.648 | 1e-132 | |
| 356574601 | 924 | PREDICTED: para-aminobenzoate synthase-l | 0.956 | 0.405 | 0.596 | 1e-131 | |
| 356533973 | 927 | PREDICTED: para-aminobenzoate synthase-l | 0.956 | 0.404 | 0.595 | 1e-131 | |
| 224109752 | 928 | p-aminobenzoate synthase [Populus tricho | 0.966 | 0.408 | 0.594 | 1e-125 | |
| 350535751 | 902 | aminodeoxychorismate synthase/glutamine | 0.903 | 0.392 | 0.583 | 1e-124 | |
| 296086031 | 853 | unnamed protein product [Vitis vinifera] | 0.813 | 0.373 | 0.594 | 1e-124 | |
| 449449473 | 901 | PREDICTED: para-aminobenzoate synthase-l | 0.931 | 0.405 | 0.585 | 1e-122 | |
| 449487191 | 497 | PREDICTED: uncharacterized protein LOC10 | 0.931 | 0.734 | 0.585 | 1e-121 | |
| 147770319 | 919 | hypothetical protein VITISV_025570 [Viti | 0.892 | 0.380 | 0.591 | 1e-120 |
| >gi|359486886|ref|XP_002274386.2| PREDICTED: para-aminobenzoate synthase-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 479 bits (1233), Expect = e-132, Method: Compositional matrix adjust.
Identities = 242/388 (62%), Positives = 287/388 (73%), Gaps = 24/388 (6%)
Query: 1 KLEFVRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVI 60
KLEFVRTLLIDNYDSYTYNIYQELS ING+PPVVV ND+ W+++C YLYEENAFDNIVI
Sbjct: 78 KLEFVRTLLIDNYDSYTYNIYQELSIINGLPPVVVHNDDLGWKEVCHYLYEENAFDNIVI 137
Query: 61 SPGPGSPACPEDIGICLRVLLECWDVPILGVCLGHQALGFVHGADIVHAPEPVHGRLSEI 120
SPGPGSPAC DIGICL++LLEC D+PILGVCLGHQALG+VHGA +VHA EP+HGRLSEI
Sbjct: 138 SPGPGSPACSADIGICLQLLLECRDIPILGVCLGHQALGYVHGARVVHASEPIHGRLSEI 197
Query: 121 VHNGDRLFHDIPSGQNSGFKVVRYHSLIIDADSLPKELIPIAWSNSADGFSYLGTLQSGE 180
HNG RLFH+IPSG+NSGFKVVRYHSL++DA SLP ELIPIAW++S+D SYL T +S
Sbjct: 198 EHNGCRLFHNIPSGKNSGFKVVRYHSLVVDAKSLPNELIPIAWTSSSDLLSYLETQKSDI 257
Query: 181 IPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRM-RREVLMGIMHSTRPHYGVQFHPE 239
+ +AY+SQ QK S+++KNG+ S ++ RM VLMGIMHSTRPHYG+QFHPE
Sbjct: 258 VLEAYESQKGQKSSFDSFSSKLKNGTSWPSRHTERMGNSRVLMGIMHSTRPHYGLQFHPE 317
Query: 240 SIATCYGSKILRNFREITEDYWKRLRSPFVKERNVHYTG-----AESLLLREITRTSRSV 294
SI T +G +I +NFRE+T+DYW R RS V ERN Y L R I + + V
Sbjct: 318 SIGTSFGRQIFKNFREMTQDYWLRSRSSVVSERNTVYLAYVQARHAGLPFRGIPKRKQLV 377
Query: 295 NNSDELGREALRPRQLFCDLGDRRFGIQHSRRFEIQRSSIGVKCLKLTWRKFDHLASTVG 354
N+ D + FG+ + + S G LKL WRKF+HLAS VG
Sbjct: 378 NDVD----------------ARKSFGMLNLLNLSVPSS--GFTFLKLKWRKFNHLASEVG 419
Query: 355 GARNIFCELFGNNKAENTFWLDSSSTEK 382
GARNIFC+LFG++KAENTFWLDSSSTEK
Sbjct: 420 GARNIFCKLFGDHKAENTFWLDSSSTEK 447
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255577381|ref|XP_002529570.1| p-aminobenzoate synthase, putative [Ricinus communis] gi|223530946|gb|EEF32804.1| p-aminobenzoate synthase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 478 bits (1229), Expect = e-132, Method: Compositional matrix adjust.
Identities = 251/387 (64%), Positives = 288/387 (74%), Gaps = 12/387 (3%)
Query: 1 KLEFVRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVI 60
KLEF RTLLIDNYDSYTYNIYQELS +NGVPPVVV+NDEWTW ++C YLYEE AFDNIVI
Sbjct: 81 KLEFFRTLLIDNYDSYTYNIYQELSVVNGVPPVVVKNDEWTWEEVCHYLYEEKAFDNIVI 140
Query: 61 SPGPGSPACPEDIGICLRVLLECWDVPILGVCLGHQALGFVHGADIVHAPEPVHGRLSEI 120
SPGPGSP C DIGICLR+LLEC D+PILGVCLGHQALG+VHGA IVHA EPVHGR SEI
Sbjct: 141 SPGPGSPTCAADIGICLRLLLECRDIPILGVCLGHQALGYVHGAQIVHASEPVHGRTSEI 200
Query: 121 VHNGDRLFHDIPSGQNSGFKVVRYHSLIIDADSLPKELIPIAWSNSADGFSYLGTLQSGE 180
H+G RLFH+IPSG+ SGFKVVRYHSL+IDADSLPKEL+PIAW+ S S+L + S
Sbjct: 201 EHHGCRLFHNIPSGRESGFKVVRYHSLVIDADSLPKELVPIAWTTSVGTRSFLESQNSDL 260
Query: 181 IPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGIMHSTRPHYGVQFHPES 240
IP AY+SQ R I S+++ NG+ YS +++LMGIMHS RPHYG+QFHPES
Sbjct: 261 IPHAYESQIRPSISSDIFSSELNNGTSWSFNYSEVQSKKILMGIMHSARPHYGLQFHPES 320
Query: 241 IATCYGSKILRNFREITEDYWKRLRSPFVKERNVHYTGA----ESLLLREITRTSRSVNN 296
IATC+G +I NFRE+T DYW++LRS FV ERN YT ++ L + R +N
Sbjct: 321 IATCHGRQIFENFREMTRDYWRKLRSTFVNERNSFYTACLQVPDASELFGVPRRGVLGSN 380
Query: 297 SDEL-GREALRPRQLFCDLGDRRFGIQHSRRFEIQRSSIGVKCLKLTWRKFDHLASTVGG 355
D L RE R RQL LG+ I S SS+GVK +KL WRKFD LA+ VGG
Sbjct: 381 EDVLPSRETSRRRQL---LGN----IDVSSLLNFPESSVGVKHIKLKWRKFDKLAAQVGG 433
Query: 356 ARNIFCELFGNNKAENTFWLDSSSTEK 382
ARNIFC LFG NKAENTFWLDSSS EK
Sbjct: 434 ARNIFCRLFGANKAENTFWLDSSSVEK 460
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356574601|ref|XP_003555434.1| PREDICTED: para-aminobenzoate synthase-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 476 bits (1224), Expect = e-131, Method: Compositional matrix adjust.
Identities = 234/392 (59%), Positives = 291/392 (74%), Gaps = 17/392 (4%)
Query: 1 KLEFVRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVI 60
K +FVRTLLIDNYDSYTYN+YQELS INGVPPVV++ND+WTW ++C YLYEENAFDNIVI
Sbjct: 83 KADFVRTLLIDNYDSYTYNVYQELSIINGVPPVVIQNDDWTWEELCHYLYEENAFDNIVI 142
Query: 61 SPGPGSPACPEDIGICLRVLLECWDVPILGVCLGHQALGFVHGADIVHAPEPVHGRLSEI 120
SPGPGSPACPEDIGICL++LL+CWD+PILGVCLGHQALG+VHGA IVHA EP+HGRLSE+
Sbjct: 143 SPGPGSPACPEDIGICLQLLLKCWDIPILGVCLGHQALGYVHGAQIVHASEPIHGRLSEV 202
Query: 121 VHNGDRLFHDIPSGQNSGFKV-VRYHSLIIDADSLPKELIPIAWSNSADGFSYLGTLQSG 179
HNG +LFHDIPSG+N GFKV VRYHSL+ID++SLP+ELIPIAW++S ++G+ G
Sbjct: 203 EHNGCQLFHDIPSGKNYGFKVLVRYHSLVIDSESLPEELIPIAWTSSTSTLPFIGSKDFG 262
Query: 180 EIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGIMHSTRPHYGVQFHPE 239
+ + ++ Q Q I + ++ +GS Y VLMGI HSTRPHYGVQFHPE
Sbjct: 263 KF-NTHEVQPDQSIFIDPFLAKVGSGSSNQFDYGKTRSARVLMGIKHSTRPHYGVQFHPE 321
Query: 240 SIATCYGSKILRNFREITEDYWKRLRSPFVKERNVHYTGAESL-----LLREITRTSRSV 294
S+ATCYG++I +NFREIT+DYW R RS F KE + H + L RE+ R+ +
Sbjct: 322 SVATCYGNQIFKNFREITDDYWLRFRSSF-KETHAHSNACMQISSANRLYREVCRSISAE 380
Query: 295 NNS-DELGREALRPRQLFCDLGDRRFGIQHSRRFEI---QRSSIGVKCLKLTWRKFDHLA 350
NN+ D+L + R L + + ++H F + ++ G KCLKL WRKF HLA
Sbjct: 381 NNAVDQLKKIVHADRHLEYNKAE----MKHLEMFNMVNTPHATTGSKCLKLKWRKFGHLA 436
Query: 351 STVGGARNIFCELFGNNKAENTFWLDSSSTEK 382
VGGA++IFC LFG ++AENTFWLDSSSTEK
Sbjct: 437 GQVGGAKSIFCGLFG-HEAENTFWLDSSSTEK 467
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356533973|ref|XP_003535532.1| PREDICTED: para-aminobenzoate synthase-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 475 bits (1223), Expect = e-131, Method: Compositional matrix adjust.
Identities = 233/391 (59%), Positives = 290/391 (74%), Gaps = 16/391 (4%)
Query: 1 KLEFVRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVI 60
K +FVRTLLIDNYDSYTYNI+QELS INGVPPVV++ND+WTW ++C YLY+ENAFDNIVI
Sbjct: 90 KADFVRTLLIDNYDSYTYNIFQELSIINGVPPVVIQNDDWTWEELCHYLYKENAFDNIVI 149
Query: 61 SPGPGSPACPEDIGICLRVLLECWDVPILGVCLGHQALGFVHGADIVHAPEPVHGRLSEI 120
SPGPGSPACPEDIGICL++LL+CWD+PILGVCLGHQALG+VHGA +VHA EP+HGRLSE+
Sbjct: 150 SPGPGSPACPEDIGICLQLLLKCWDIPILGVCLGHQALGYVHGAQVVHASEPIHGRLSEV 209
Query: 121 VHNGDRLFHDIPSGQNSGFKVVRYHSLIIDADSLPKELIPIAWSNSADGFSYLGTLQSGE 180
HNG +LF DIPSG+N GFKVVRYHSL+ID++SLP ELIPIAW++S ++G+ G+
Sbjct: 210 EHNGCQLFRDIPSGKNYGFKVVRYHSLVIDSESLPAELIPIAWTSSTSTLPFIGSKDFGK 269
Query: 181 IPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGIMHSTRPHYGVQFHPES 240
+ +++Q Q I + + ++ NGS H Y VLMGI HSTRPHYGVQFHPES
Sbjct: 270 -SNTHEAQPDQSISIDPLLAKVGNGSSNHFDYGKTRSARVLMGIRHSTRPHYGVQFHPES 328
Query: 241 IATCYGSKILRNFREITEDYWKRLRSPFVKERNVH-----YTGAESLLLREITRTSRSVN 295
+ATCYGS+I +NFREIT+DYW R RS F KE + + + + L RE+ R+ + N
Sbjct: 329 VATCYGSQIFKNFREITDDYWLRFRSSF-KETHAYSDACMQVSSANRLYREVCRSISTEN 387
Query: 296 NS-DELGREALRPRQLFCDLGDRRFGIQHSRRFEI---QRSSIGVKCLKLTWRKFDHLAS 351
N+ D+L R L + + ++H F + ++ G KCLKL WRKF HLA
Sbjct: 388 NAVDQLKEIVHADRHLEYNKAE----MKHLEMFNMVNTHHATTGYKCLKLKWRKFGHLAG 443
Query: 352 TVGGARNIFCELFGNNKAENTFWLDSSSTEK 382
VGGA+ IFC LFG +AENTFWLDSSSTEK
Sbjct: 444 QVGGAKGIFCGLFG-LEAENTFWLDSSSTEK 473
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224109752|ref|XP_002315300.1| p-aminobenzoate synthase [Populus trichocarpa] gi|222864340|gb|EEF01471.1| p-aminobenzoate synthase [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 455 bits (1170), Expect = e-125, Method: Compositional matrix adjust.
Identities = 239/402 (59%), Positives = 282/402 (70%), Gaps = 23/402 (5%)
Query: 1 KLEFVRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVI 60
K++FVRTLLIDNYDSYTYNIYQELS +NGVPPVV++NDEWTW D C YLYE+ AFDNIVI
Sbjct: 76 KMDFVRTLLIDNYDSYTYNIYQELSVVNGVPPVVIQNDEWTWEDACHYLYEKRAFDNIVI 135
Query: 61 SPGPGSPACPEDIGICLRVLLECWDVPILGVCLGHQALGFVHGADIVHAPEPVHGRLSEI 120
SPGPGSP C DIGICLR+LLEC D+PILGVCLGHQALG+V+GA IVHA EPVHGRLSEI
Sbjct: 136 SPGPGSPTCAADIGICLRLLLECRDIPILGVCLGHQALGYVNGARIVHASEPVHGRLSEI 195
Query: 121 VHNGDRLFHDIPSGQNSGFKVVRYHSLIIDADSLPKELIPIAWSNSADGFSYLGTLQSGE 180
HNG RLF +IPSG+ SGFKVVRYHSLIID+++LPKELIP AW++S+ S+L + SG
Sbjct: 196 EHNGSRLFDNIPSGRKSGFKVVRYHSLIIDSEALPKELIPTAWTSSST-HSFLESPNSGL 254
Query: 181 IPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMR-REVLMGIMHSTRPHYGVQFHPE 239
DA ++Q R ST NG+ + RM+ +VLMGIMHSTRPHYG+QFHPE
Sbjct: 255 NLDACKNQIRPSTSSDTFSTGSHNGASWSFSHPGRMQGGKVLMGIMHSTRPHYGLQFHPE 314
Query: 240 SIATCYGSKILRNFREITEDYWKRLRSP------------------FVKERNVHYTGAES 281
SIATC+G +I NFREITEDYW+RLR V+E + + +
Sbjct: 315 SIATCHGRQIFENFREITEDYWQRLRPSNLYSNGSSLVRYGIGLLCVVRELGIKFAVHVA 374
Query: 282 LLLREITRTSRSVNNSD-ELGREALRPRQLFCDLGDRRFGIQHSRRFEIQRSSIGVKCLK 340
L + R V+ D + +EA R QL + I + +F SSI V+ LK
Sbjct: 375 SQLFRVPRIGSLVHKEDAQPFKEAFRRSQLLGNANVNCLSISSALKF--PESSINVRHLK 432
Query: 341 LTWRKFDHLASTVGGARNIFCELFGNNKAENTFWLDSSSTEK 382
L WRKFD LA+ VGGARNIF ELFG KAENTFWLDSSS EK
Sbjct: 433 LKWRKFDKLAARVGGARNIFNELFGVCKAENTFWLDSSSVEK 474
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|350535751|ref|NP_001234467.1| aminodeoxychorismate synthase/glutamine amidotransferase [Solanum lycopersicum] gi|40218381|gb|AAR83121.1| aminodeoxychorismate synthase/glutamine amidotransferase [Solanum lycopersicum] | Back alignment and taxonomy information |
|---|
Score = 450 bits (1158), Expect = e-124, Method: Compositional matrix adjust.
Identities = 226/387 (58%), Positives = 271/387 (70%), Gaps = 33/387 (8%)
Query: 1 KLEFVRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVI 60
KLEFVRTLLIDNYDSYTYNI+QELS ING+PPVV+RNDEWTW+++ YLYEE FDNIVI
Sbjct: 80 KLEFVRTLLIDNYDSYTYNIFQELSIINGMPPVVIRNDEWTWKEVYHYLYEERTFDNIVI 139
Query: 61 SPGPGSPACPEDIGICLRVLLECWDVPILGVCLGHQALGFVHGADIVHAPEPVHGRLSEI 120
SPGPGSP CP DIGICLR+LLEC D+PILGVCLGHQALG+VHGA++VHAPEP HGRLS+I
Sbjct: 140 SPGPGSPTCPSDIGICLRLLLECIDIPILGVCLGHQALGYVHGAEVVHAPEPFHGRLSDI 199
Query: 121 VHNGDRLFHDIPSGQNSGFKVVRYHSLIIDADSLPKELIPIAWSNSADGFSYLGTLQSGE 180
HNG +LFH+IPSG++SGFKVVRYHSL+ID SLPKELIPIAW+++A+ + G +S
Sbjct: 200 EHNGCQLFHEIPSGRSSGFKVVRYHSLVIDPKSLPKELIPIAWTSTAETLPFQGVKRSNS 259
Query: 181 IPDAYQSQSRQKIL-----LSDISTQIKNGSYRHSIYSNRMRREVLMGIMHSTRPHYGVQ 235
+A S+ + I LSD S +K G +VLMGIMHS+RPHYG+Q
Sbjct: 260 FLNA--SKENKDIFNGMSELSDDSKDVKGG-------------KVLMGIMHSSRPHYGLQ 304
Query: 236 FHPESIATCYGSKILRNFREITEDYWKRLRSPFVKERNVHYTGAESLLLREITRTSRSVN 295
FHPES+ATCYG ++ +NFR+ITEDYW L S ER HY V
Sbjct: 305 FHPESVATCYGRQLFKNFRKITEDYWLLLMSTSFNERRAHYAAC------------MQVP 352
Query: 296 NSDELGREALRPRQLFCDLGDRRFGIQHSRRFEIQRSSIGVKCLKLTWRKFDHLASTVGG 355
N D L R + L L +RR + + VK LK+TW+K D AS VGG
Sbjct: 353 NLDPLSRSVAKRGHLVNKLIERRTA-EVDGTLNLSHPGHSVKFLKMTWKKLDCSASQVGG 411
Query: 356 ARNIFCELFGNNKAENTFWLDSSSTEK 382
A NIFCELFG+ +A+N+FWLDSSS EK
Sbjct: 412 ADNIFCELFGDQEAKNSFWLDSSSIEK 438
|
Source: Solanum lycopersicum Species: Solanum lycopersicum Genus: Solanum Family: Solanaceae Order: Solanales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296086031|emb|CBI31472.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 449 bits (1156), Expect = e-124, Method: Compositional matrix adjust.
Identities = 227/382 (59%), Positives = 265/382 (69%), Gaps = 63/382 (16%)
Query: 1 KLEFVRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVI 60
KLEFVRTLLIDNYDSYTYNIYQELS ING+PPVVV ND+ W+++C YLYEENAFDNIVI
Sbjct: 78 KLEFVRTLLIDNYDSYTYNIYQELSIINGLPPVVVHNDDLGWKEVCHYLYEENAFDNIVI 137
Query: 61 SPGPGSPACPEDIGICLRVLLECWDVPILGVCLGHQALGFVHGADIVHAPEPVHGRLSEI 120
SPGPGSPAC DIGICL++LLEC D+PILGVCLGHQALG+VHGA +VHA EP+HGRLSEI
Sbjct: 138 SPGPGSPACSADIGICLQLLLECRDIPILGVCLGHQALGYVHGARVVHASEPIHGRLSEI 197
Query: 121 VHNGDRLFHDIPSGQNSGFKVVRYHSLIIDADSLPKELIPIAWSNSADGFSYLGTLQSGE 180
HNG RLFH+IPSG+NSGFKVVRYHSL++DA SLP ELIPIAW++S+D SYL T
Sbjct: 198 EHNGCRLFHNIPSGKNSGFKVVRYHSLVVDAKSLPNELIPIAWTSSSDLLSYLET----- 252
Query: 181 IPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGIMHSTRPHYGVQFHPES 240
++VLMGIMHSTRPHYG+QFHPES
Sbjct: 253 -------------------------------------QKVLMGIMHSTRPHYGLQFHPES 275
Query: 241 IATCYGSKILRNFREITEDYWKRLRSPFVKERNVHYTGAESLLLREITRTSRSVNNSDEL 300
I T +G +I +NFRE+T+DYW R RS V ER + G L R I + + VN+ D
Sbjct: 276 IGTSFGRQIFKNFREMTQDYWLRSRSSVVSERKARHAG---LPFRGIPKRKQLVNDVD-- 330
Query: 301 GREALRPRQLFCDLGDRRFGIQHSRRFEIQRSSIGVKCLKLTWRKFDHLASTVGGARNIF 360
+ FG+ + + S G LKL WRKF+HLAS VGGARNIF
Sbjct: 331 --------------ARKSFGMLNLLNLSVPSS--GFTFLKLKWRKFNHLASEVGGARNIF 374
Query: 361 CELFGNNKAENTFWLDSSSTEK 382
C+LFG++KAENTFWLDSSSTEK
Sbjct: 375 CKLFGDHKAENTFWLDSSSTEK 396
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449449473|ref|XP_004142489.1| PREDICTED: para-aminobenzoate synthase-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 443 bits (1140), Expect = e-122, Method: Compositional matrix adjust.
Identities = 225/384 (58%), Positives = 273/384 (71%), Gaps = 19/384 (4%)
Query: 1 KLEFVRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVI 60
KLEFVRTLLIDNYDSYTYNIYQ+LS ING+PPVV+RND+WTW D+C YLYEE AFDNIVI
Sbjct: 81 KLEFVRTLLIDNYDSYTYNIYQDLSVINGLPPVVIRNDDWTWEDLCHYLYEEKAFDNIVI 140
Query: 61 SPGPGSPACPEDIGICLRVLLECWDVPILGVCLGHQALGFVHGADIVHAPEPVHGRLSEI 120
SPGPGSPAC DIGICLR+L EC D+PILGVCLGHQALG+VHGA +VHA EPVHGRLSEI
Sbjct: 141 SPGPGSPACANDIGICLRLLHECKDIPILGVCLGHQALGYVHGAKVVHANEPVHGRLSEI 200
Query: 121 VHNGDRLFHDIPSGQNSGFKVVRYHSLIIDADSLPKELIPIAWSNSADGFSYLGTLQSGE 180
HNG LF+ IPSG+NSG KVVRYHSL+ID +SLPKELIPI+W+ S D S+L S
Sbjct: 201 EHNGCSLFNGIPSGRNSGSKVVRYHSLVIDPESLPKELIPISWTCSTDTQSFLEISNSSS 260
Query: 181 IPDAYQSQSRQKILLSDISTQIKNG--SYRHSIYSNRMRREVLMGIMHSTRPHYGVQFHP 238
I DA I+ SD ++++ + + + N+ +VLM +MHS RPHYGVQFHP
Sbjct: 261 ISDACD------IVPSDSRSEVQKSLRVWPFNGHRNKENGKVLMAVMHSIRPHYGVQFHP 314
Query: 239 ESIATCYGSKILRNFREITEDYWKRLRSPFVKERNVHYTGAESLLLREITRTSRSVNNSD 298
ES+ TC+G +I +NFREITED+W + NV Y+G + + + + S S
Sbjct: 315 ESVGTCFGREIFKNFREITEDHWLNYGPLVAHKENVDYSGNRIIQRKPVDQLSDRPFPSK 374
Query: 299 ELGREALRPRQLFCDLGDRRFGIQHSRRFEIQRSSIGVKCLKLTWRKFDHLASTVGGARN 358
+G + C R G+ + S GVK LKLTW+K+DHLAS VGGA+N
Sbjct: 375 GIGLNGV------C-----RKGVGMFDLVNLSYPSNGVKFLKLTWKKYDHLASEVGGAKN 423
Query: 359 IFCELFGNNKAENTFWLDSSSTEK 382
IF +LFG++KAENTFWLDSSS EK
Sbjct: 424 IFFQLFGHHKAENTFWLDSSSIEK 447
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449487191|ref|XP_004157523.1| PREDICTED: uncharacterized protein LOC101227556 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 441 bits (1134), Expect = e-121, Method: Compositional matrix adjust.
Identities = 225/384 (58%), Positives = 273/384 (71%), Gaps = 19/384 (4%)
Query: 1 KLEFVRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVI 60
KLEFVRTLLIDNYDSYTYNIYQ+LS ING+PPVV+RND+WTW D+C YLYEE AFDNIVI
Sbjct: 81 KLEFVRTLLIDNYDSYTYNIYQDLSVINGLPPVVIRNDDWTWEDLCHYLYEEKAFDNIVI 140
Query: 61 SPGPGSPACPEDIGICLRVLLECWDVPILGVCLGHQALGFVHGADIVHAPEPVHGRLSEI 120
SPGPGSPAC DIGICLR+L EC D+PILGVCLGHQALG+VHGA +VHA EPVHGRLSEI
Sbjct: 141 SPGPGSPACANDIGICLRLLHECKDIPILGVCLGHQALGYVHGAKVVHANEPVHGRLSEI 200
Query: 121 VHNGDRLFHDIPSGQNSGFKVVRYHSLIIDADSLPKELIPIAWSNSADGFSYLGTLQSGE 180
HNG LF+ IPSG+NSG KVVRYHSL+ID +SLPKELIPI+W+ S D S+L S
Sbjct: 201 EHNGCSLFNGIPSGRNSGSKVVRYHSLVIDPESLPKELIPISWTCSTDTQSFLEISNSSS 260
Query: 181 IPDAYQSQSRQKILLSDISTQIKNG--SYRHSIYSNRMRREVLMGIMHSTRPHYGVQFHP 238
I DA I+ SD ++++ + + + N+ +VLM +MHS RPHYGVQFHP
Sbjct: 261 ISDACD------IVPSDSRSEVQKSLRVWPFNGHRNKENGKVLMAVMHSIRPHYGVQFHP 314
Query: 239 ESIATCYGSKILRNFREITEDYWKRLRSPFVKERNVHYTGAESLLLREITRTSRSVNNSD 298
ES+ TC+G +I +NFREITED+W + NV Y+G + + + + S S
Sbjct: 315 ESVGTCFGREIFKNFREITEDHWLNYGPLVAHKENVDYSGNRIIQRKPVDQLSDRPFPSK 374
Query: 299 ELGREALRPRQLFCDLGDRRFGIQHSRRFEIQRSSIGVKCLKLTWRKFDHLASTVGGARN 358
+G + C G F + + S GVK LKLTW+K+DHLAS VGGA+N
Sbjct: 375 GIGLNGV------CRKGVGMFDL-----VNLSYPSNGVKFLKLTWKKYDHLASEVGGAKN 423
Query: 359 IFCELFGNNKAENTFWLDSSSTEK 382
IF +LFG++KAENTFWLDSSS EK
Sbjct: 424 IFFQLFGHHKAENTFWLDSSSIEK 447
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147770319|emb|CAN73645.1| hypothetical protein VITISV_025570 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 437 bits (1124), Expect = e-120, Method: Compositional matrix adjust.
Identities = 227/384 (59%), Positives = 271/384 (70%), Gaps = 34/384 (8%)
Query: 3 EFVRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISP 62
E VRTLLIDNYDSYTYN+YQELS +NGVPPVVV ND+ TW +I YLYEE AFDN+VISP
Sbjct: 79 EIVRTLLIDNYDSYTYNVYQELSIVNGVPPVVVYNDDLTWEEIYHYLYEEKAFDNVVISP 138
Query: 63 GPGSPACPEDIGICLRVLLECWDVPILGVCLGHQALGFVHGADIVHAPEPVHGRLSEIVH 122
GPG+P+ PEDIGICLR+L EC D+PILGVCLG++ALG VHGA+IVHAPEP+HGRLSE+ H
Sbjct: 139 GPGTPSRPEDIGICLRLLRECKDIPILGVCLGYEALGHVHGAEIVHAPEPIHGRLSELEH 198
Query: 123 NGDRLFHDIPSGQNSGFKVVRYHSLIIDADSLPKELIPIAWSNSADGFSYLGTLQSGEIP 182
NG LF DIPSG NSGFKVVRYHSL+IDA +L +EL+PIAW++S+D SYL +SGE P
Sbjct: 199 NGCSLFDDIPSGPNSGFKVVRYHSLVIDAKTLSQELVPIAWTSSSDALSYLEIQKSGESP 258
Query: 183 DAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRR-EVLMGIMHSTRPHYGVQFHPESI 241
DAY+SQ Q K G+ S +S +++ ++LMGIMH TRPHYGVQFHPESI
Sbjct: 259 DAYESQMGQ-----------KRGNSSPSSHSEKIQNGKILMGIMHCTRPHYGVQFHPESI 307
Query: 242 ATCYGSKILRNFREITEDYWKRLRSPFVKERNVHYTGAESLLLREITRTSRSVNNSDELG 301
T YG KI +NFREIT+DYW R + F ER R RS+ L
Sbjct: 308 GTAYGRKIFKNFREITQDYWLR-KILFSNER----------------REPRSI----RLF 346
Query: 302 REALRPRQLFCDLGDRRFGIQHSRRFEIQRSSIGVKCLKLTWRKFDHLASTVGGARNIFC 361
++ L R+L + G+RR + S VK L L WRKF+ LA VGG+RNIFC
Sbjct: 347 KDLLGHRRLVHNAGERR-SSSFPSLLNLSLPSSDVKFLNLEWRKFNGLAGQVGGSRNIFC 405
Query: 362 ELFGNNKAENTFWLDSSSTEKVGF 385
ELFG N AE TFWLDS+STE+ F
Sbjct: 406 ELFGGNNAEYTFWLDSASTERGRF 429
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 392 | ||||||
| TAIR|locus:2053255 | 919 | emb1997 "embryo defective 1997 | 0.951 | 0.405 | 0.551 | 4.3e-109 | |
| TIGR_CMR|CHY_1931 | 191 | CHY_1931 "para-aminobenzoate/a | 0.372 | 0.764 | 0.462 | 1.2e-35 | |
| UNIPROTKB|Q0C1A0 | 190 | trpG "Anthranilate synthase co | 0.377 | 0.778 | 0.419 | 9e-34 | |
| TIGR_CMR|CHY_1586 | 189 | CHY_1586 "para-aminobenzoate/a | 0.375 | 0.777 | 0.417 | 1.1e-33 | |
| UNIPROTKB|Q48NP9 | 199 | trpG "Anthranilate synthase, c | 0.380 | 0.748 | 0.423 | 3e-33 | |
| UNIPROTKB|Q88A05 | 199 | trpG "Anthranilate synthase, c | 0.380 | 0.748 | 0.423 | 3e-33 | |
| TIGR_CMR|BA_0069 | 195 | BA_0069 "para-aminobenzoate sy | 0.377 | 0.758 | 0.407 | 6.2e-33 | |
| TIGR_CMR|SO_0613 | 191 | SO_0613 "para-aminobenzoate sy | 0.408 | 0.837 | 0.403 | 7.9e-33 | |
| UNIPROTKB|Q488X6 | 199 | pabA "Anthranilate synthase co | 0.377 | 0.743 | 0.426 | 1.3e-32 | |
| TIGR_CMR|CPS_0638 | 199 | CPS_0638 "anthranilate synthas | 0.377 | 0.743 | 0.426 | 1.3e-32 |
| TAIR|locus:2053255 emb1997 "embryo defective 1997" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1078 (384.5 bits), Expect = 4.3e-109, P = 4.3e-109
Identities = 214/388 (55%), Positives = 271/388 (69%)
Query: 1 KLEFVRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVI 60
KL FVRTLLIDNYDSYT+NIYQ LSTINGVPPVV+RNDEWTW + YLYE+ AFDNIVI
Sbjct: 81 KLGFVRTLLIDNYDSYTFNIYQALSTINGVPPVVIRNDEWTWEEAYHYLYEDVAFDNIVI 140
Query: 61 SPGPGSPACPEDIGICLRVLLECWDVPILGVCLGHQALGFVHGADIVHAPEPVHGRLSEI 120
SPGPGSP CP DIGICLR+LLEC D+PILGVCLGHQALG+VHGA +VHAPEPVHGRLS I
Sbjct: 141 SPGPGSPMCPADIGICLRLLLECRDIPILGVCLGHQALGYVHGAHVVHAPEPVHGRLSGI 200
Query: 121 VHNGDRLFHDIPSGQNSGFKVVRYHSLIIDADSLPKELIPIAWSNSADGFSYLGTLQSGE 180
H+G+ LF DIPSG+NS FKVVRYHSLIID +SLPKEL+PIAW+ D S+
Sbjct: 201 EHDGNILFSDIPSGRNSDFKVVRYHSLIIDKESLPKELVPIAWTIYDDTGSFSEKNSCVP 260
Query: 181 IPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSN-RMRREVLMGIMHSTRPHYGVQFHPE 239
+ + ++ +S +++N S+ S + N + R +LMGIMHS+ PHYG+QFHPE
Sbjct: 261 VNNTGSPLGNGSVI--PVSEKLENRSHWPSSHVNGKQDRHILMGIMHSSFPHYGLQFHPE 318
Query: 240 SIATCYGSKILRNFREITEDYWKRLRSPFVKERNVHYTGAESL-----LLREITRTSRSV 294
SIAT YGS++ +NF++IT +YW R +S ++ RN++ T + LL+E++RT +
Sbjct: 319 SIATTYGSQLFKNFKDITVNYWSRCKSTSLRRRNINDTANMQVPDATQLLKELSRTRCTG 378
Query: 295 NNSDELGREALRPRQLFCDLGDRRFGIQHSRRFEIQRSSIGVKCLKLTWRKFDHLASTVG 354
N S G P+ LF + G+ + K L+L W+K + LA VG
Sbjct: 379 NGSSYFGN----PKSLF---SAKTNGVDVFDMVDSSYPKPHTKLLRLKWKKHERLAHKVG 431
Query: 355 GARNIFCELFGNNKAENTFWLDSSSTEK 382
G RNIF ELFG N+ +TFWLD+SS++K
Sbjct: 432 GVRNIFMELFGKNRGNDTFWLDTSSSDK 459
|
|
| TIGR_CMR|CHY_1931 CHY_1931 "para-aminobenzoate/anthranilate synthase glutamine amidotransferase, component II" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] | Back alignment and assigned GO terms |
|---|
Score = 298 (110.0 bits), Expect = 1.2e-35, Sum P(2) = 1.2e-35
Identities = 75/162 (46%), Positives = 95/162 (58%)
Query: 8 LLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSP 67
LLIDNYDS+TYN+ Q + G V RND+ T +I R L N D IVISPGP
Sbjct: 3 LLIDNYDSFTYNLVQYFQML-GEAVTVYRNDKITVEEI-RAL---NP-DYIVISPGP--- 53
Query: 68 ACPEDIGICLRVLLECWDVPILGVCLGHQALGFVHGADIVHAPEPVHGRLSEIVHNGDRL 127
P + GI L V+ + PILGVCLGHQA+G V G +V A P+HG+ S I H+G +
Sbjct: 54 CTPNEAGISLEVIKNLYRYPILGVCLGHQAIGQVFGGKVVRAARPMHGKTSPIYHDGKTI 113
Query: 128 FHDIPSGQNSGFKVVRYHSLIIDADSLPKELIPIAWSNSADG 169
F IPS F RYHSLI++ LP+E I + +A+G
Sbjct: 114 FKGIPSP----FLATRYHSLIVE---LPEETELIVSAKTAEG 148
|
|
| UNIPROTKB|Q0C1A0 trpG "Anthranilate synthase component II" [Hyphomonas neptunium ATCC 15444 (taxid:228405)] | Back alignment and assigned GO terms |
|---|
Score = 271 (100.5 bits), Expect = 9.0e-34, Sum P(2) = 9.0e-34
Identities = 68/162 (41%), Positives = 93/162 (57%)
Query: 8 LLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSP 67
L+IDNYDS+T+N+ L + G VVRND+ T D L D +++SPGP
Sbjct: 3 LVIDNYDSFTWNLVHYLEEL-GAKTHVVRNDQLTV-DEALALKP----DALLLSPGP--- 53
Query: 68 ACPEDIGICLRVLLECWD-VPILGVCLGHQALGFVHGADIVHAPEPVHGRLSEIVHNGDR 126
P + GICL +L D +P+LGVCLGHQA+G G ++HA E HG++SEI N
Sbjct: 54 CTPNEAGICLDLLKAAPDDLPVLGVCLGHQAIGQAFGGAVIHAREIRHGKISEIETNQSG 113
Query: 127 LFHDIPSGQNSGFKVVRYHSLIIDADSLPKELIPIAWSNSAD 168
LF +P ++VVRYHSL I D LP L+ A ++ +
Sbjct: 114 LFEGLPER----YQVVRYHSLAIRTDDLPDCLLADAHTDDGE 151
|
|
| TIGR_CMR|CHY_1586 CHY_1586 "para-aminobenzoate/anthranilate synthase glutamine amidotransferase, component II" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] | Back alignment and assigned GO terms |
|---|
Score = 279 (103.3 bits), Expect = 1.1e-33, Sum P(2) = 1.1e-33
Identities = 68/163 (41%), Positives = 94/163 (57%)
Query: 8 LLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSP 67
LLIDNYDS+TYN+ Q L + G VV RND T +I E +I+ISPGP
Sbjct: 3 LLIDNYDSFTYNLVQYLGEL-GHRVVVRRNDRITLSEI-----REMKPTHIIISPGP--- 53
Query: 68 ACPEDIGICLRVL-LECWDVPILGVCLGHQALGFVHGADIVHAPEPVHGRLSEIVHNGDR 126
P + GI L V+ +PILGVCLGHQ +G G ++ PVHG+ S I H+G
Sbjct: 54 CTPNEAGISLDVVRFFAGKIPILGVCLGHQVIGQAFGGKVIQDKIPVHGKTSLIYHDGQG 113
Query: 127 LFHDIPSGQNSGFKVVRYHSLIIDADSLPKELIPIAWSNSADG 169
++ +P+ F+ RYHSL+++ + LP+ELI A +A+G
Sbjct: 114 IYKGLPNP----FRATRYHSLVVEKEGLPQELIITA--TTAEG 150
|
|
| UNIPROTKB|Q48NP9 trpG "Anthranilate synthase, component II" [Pseudomonas syringae pv. phaseolicola 1448A (taxid:264730)] | Back alignment and assigned GO terms |
|---|
Score = 293 (108.2 bits), Expect = 3.0e-33, Sum P(2) = 3.0e-33
Identities = 69/163 (42%), Positives = 93/163 (57%)
Query: 8 LLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSP 67
L+IDNYDS+TYN+ Q L + G V+RNDE T I L E IV+SPGP
Sbjct: 3 LMIDNYDSFTYNVVQYLGEL-GADVKVIRNDELTIEQI-EALNPER----IVVSPGP--- 53
Query: 68 ACPEDIGICLRVLLE-CWDVPILGVCLGHQALGFVHGADIVHAPEPVHGRLSEIVHNGDR 126
P + G+ L V+ +PILGVCLGHQ++G G D+V A + +HG+ S +VH
Sbjct: 54 CTPNEAGVSLEVIKHFAGKLPILGVCLGHQSIGQAFGGDVVRARQVMHGKTSPVVHQDGG 113
Query: 127 LFHDIPSGQNSGFKVVRYHSLIIDADSLPKELIPIAWSNSADG 169
+F G N V RYHSL++ +D+LP+ L AW+ DG
Sbjct: 114 VFE----GLNHPLVVTRYHSLVVKSDTLPECLEVTAWTALEDG 152
|
|
| UNIPROTKB|Q88A05 trpG "Anthranilate synthase, component II" [Pseudomonas syringae pv. tomato str. DC3000 (taxid:223283)] | Back alignment and assigned GO terms |
|---|
Score = 293 (108.2 bits), Expect = 3.0e-33, Sum P(2) = 3.0e-33
Identities = 69/163 (42%), Positives = 94/163 (57%)
Query: 8 LLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSP 67
L+IDNYDS+TYN+ Q L + G V+RNDE T I L E IV+SPGP
Sbjct: 3 LMIDNYDSFTYNVVQYLGEL-GADVKVIRNDELTIAQI-EALNPER----IVVSPGP--- 53
Query: 68 ACPEDIGICLRVLLE-CWDVPILGVCLGHQALGFVHGADIVHAPEPVHGRLSEIVHNGDR 126
P + G+ L V+ +PILGVCLGHQ++G G D+V A + +HG+ S +VH
Sbjct: 54 CTPNEAGVSLEVIKHFAGKLPILGVCLGHQSIGQAFGGDVVRARQVMHGKTSPVVHEDGG 113
Query: 127 LFHDIPSGQNSGFKVVRYHSLIIDADSLPKELIPIAWSNSADG 169
+F +G N V RYHSL++ +D+LP+ L AW+ DG
Sbjct: 114 VF----AGLNHPLVVTRYHSLVVKSDTLPECLEVTAWTALEDG 152
|
|
| TIGR_CMR|BA_0069 BA_0069 "para-aminobenzoate synthase glutamine amidotransferase, component II" [Bacillus anthracis str. Ames (taxid:198094)] | Back alignment and assigned GO terms |
|---|
Score = 273 (101.2 bits), Expect = 6.2e-33, Sum P(2) = 6.2e-33
Identities = 66/162 (40%), Positives = 93/162 (57%)
Query: 8 LLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSP 67
L+IDNYDS+T+N+ Q L + G VV RNDE T DI E D ++ISPGP SP
Sbjct: 3 LMIDNYDSFTFNLVQFLGEL-GQELVVKRNDEVTISDI-----ENMKPDFLMISPGPCSP 56
Query: 68 ACPEDIGICLRVLLE-CWDVPILGVCLGHQALGFVHGADIVHAPEPVHGRLSEIVHNGDR 126
+ GI + V+ +PI GVCLGHQ++ V G ++V A +HG+ S + H+G
Sbjct: 57 ---NEAGISMDVIRYFAGKIPIFGVCLGHQSIAQVFGGEVVRAERLMHGKTSPMHHDGKT 113
Query: 127 LFHDIPSGQNSGFKVVRYHSLIIDADSLPKELIPIAWSNSAD 168
+F DIP+ F RYHSLI+ ++LP L +W+ +
Sbjct: 114 IFSDIPNP----FTATRYHSLIVKKETLPDCLEVTSWTEEGE 151
|
|
| TIGR_CMR|SO_0613 SO_0613 "para-aminobenzoate synthase glutamine amidotransferase, component II" [Shewanella oneidensis MR-1 (taxid:211586)] | Back alignment and assigned GO terms |
|---|
Score = 282 (104.3 bits), Expect = 7.9e-33, Sum P(2) = 7.9e-33
Identities = 71/176 (40%), Positives = 98/176 (55%)
Query: 8 LLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSP 67
L+IDNYDS+T+N+ Q + G VV RNDE + I E A ++VISPGP SP
Sbjct: 3 LMIDNYDSFTFNLVQYFQQL-GQEIVVKRNDEISLEGI-----EALAPSHLVISPGPCSP 56
Query: 68 ACPEDIGICLRVLLE-CWDVPILGVCLGHQALGFVHGADIVHAPEPVHGRLSEIVHNGDR 126
+ GI L + +PILGVCLGHQA+ V GA +V A +HG++S I H G+R
Sbjct: 57 ---NEAGISLAAIEHFATRLPILGVCLGHQAMAQVFGAKVVRAQRVMHGKVSAIAHTGER 113
Query: 127 LFHDIPSGQNSGFKVVRYHSLIIDADSLPKELIPIAWSNSADGFSYLGTLQSGEIP 182
LF G N V RYHSL++D ++PK+ + AW + + + E+P
Sbjct: 114 LF----KGLNQPLTVTRYHSLLVD--TVPKDFVLDAWFDDPTHGREIMAMSHKELP 163
|
|
| UNIPROTKB|Q488X6 pabA "Anthranilate synthase component II" [Colwellia psychrerythraea 34H (taxid:167879)] | Back alignment and assigned GO terms |
|---|
Score = 287 (106.1 bits), Expect = 1.3e-32, Sum P(2) = 1.3e-32
Identities = 70/164 (42%), Positives = 95/164 (57%)
Query: 8 LLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSP 67
L+IDNYDS+T+N+ + G VV RN+E + ++I E+ IVISPGP
Sbjct: 3 LMIDNYDSFTFNLVHYFQAL-GQEVVVYRNNEISLKEI-----EQLTPQYIVISPGP--- 53
Query: 68 AC-PEDIGICLRVLLE-CWDVPILGVCLGHQALGFVHGADIVHAPEPVHGRLSEIVHNGD 125
C P+ GI L V+ E +P+LGVCLGHQ + GA +V A + +HG+ S+I HN
Sbjct: 54 -CDPDSAGISLDVVKEFAGKIPLLGVCLGHQCIAQHFGASVVKAKKVMHGKTSKISHNQQ 112
Query: 126 RLFHDIPSGQNSGFKVVRYHSLIIDADSLPKELIPIAWSNSADG 169
LF ++ N +V RYHSLI+D SLP EL AWS + G
Sbjct: 113 GLFAEL----NHPLQVTRYHSLIVDKQSLPAELTMTAWSQNEQG 152
|
|
| TIGR_CMR|CPS_0638 CPS_0638 "anthranilate synthase component II" [Colwellia psychrerythraea 34H (taxid:167879)] | Back alignment and assigned GO terms |
|---|
Score = 287 (106.1 bits), Expect = 1.3e-32, Sum P(2) = 1.3e-32
Identities = 70/164 (42%), Positives = 95/164 (57%)
Query: 8 LLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSP 67
L+IDNYDS+T+N+ + G VV RN+E + ++I E+ IVISPGP
Sbjct: 3 LMIDNYDSFTFNLVHYFQAL-GQEVVVYRNNEISLKEI-----EQLTPQYIVISPGP--- 53
Query: 68 AC-PEDIGICLRVLLE-CWDVPILGVCLGHQALGFVHGADIVHAPEPVHGRLSEIVHNGD 125
C P+ GI L V+ E +P+LGVCLGHQ + GA +V A + +HG+ S+I HN
Sbjct: 54 -CDPDSAGISLDVVKEFAGKIPLLGVCLGHQCIAQHFGASVVKAKKVMHGKTSKISHNQQ 112
Query: 126 RLFHDIPSGQNSGFKVVRYHSLIIDADSLPKELIPIAWSNSADG 169
LF ++ N +V RYHSLI+D SLP EL AWS + G
Sbjct: 113 GLFAEL----NHPLQVTRYHSLIVDKQSLPAELTMTAWSQNEQG 152
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| Your Input: | |||||||||||
| PABAS | p-aminobenzoate synthase (928 aa) | ||||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| ASA2 | anthranilate synthase, alpha subunit 2 (EC-4.1.3.27) (530 aa) | • | • | • | • | 0.814 | |||||
| ASA1 | anthranilate synthase, alpha subunit 1 (EC-4.1.3.27) (532 aa) | • | • | • | • | 0.814 | |||||
| ASB1 | anthranilate synthase, beta subunit, ASB1 (EC-4.1.3.27) (276 aa) | • | • | • | • | 0.811 | |||||
| ASB2 | anthranilate synthase, beta subunit, ASB2 (EC-4.1.3.27) (240 aa) | • | • | • | • | 0.809 | |||||
| CM1|CM | chorismate mutase (EC-5.4.99.5) (258 aa) | • | 0.800 | ||||||||
| CM1 | chorismate mutase (EC-5.4.99.5) (257 aa) | • | 0.800 | ||||||||
| CS1 | chorismate synthase (EC-4.2.3.5) (438 aa) | • | 0.800 | ||||||||
| CM2 | chorismate mutase (EC-5.4.99.5) (255 aa) | • | 0.800 | ||||||||
| CS2 | RecName- Full=Chorismate synthase; EC=4.2.3.5; (437 aa) | • | 0.800 | ||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 392 | |||
| PLN02889 | 918 | PLN02889, PLN02889, oxo-acid-lyase/anthranilate sy | 0.0 | |
| cd01743 | 184 | cd01743, GATase1_Anthranilate_Synthase, Type 1 glu | 9e-77 | |
| PRK05670 | 189 | PRK05670, PRK05670, anthranilate synthase componen | 5e-72 | |
| COG0512 | 191 | COG0512, PabA, Anthranilate/para-aminobenzoate syn | 1e-70 | |
| PRK14607 | 534 | PRK14607, PRK14607, bifunctional glutamine amidotr | 1e-57 | |
| CHL00101 | 190 | CHL00101, trpG, anthranilate synthase component 2 | 4e-50 | |
| PRK07765 | 214 | PRK07765, PRK07765, para-aminobenzoate synthase co | 1e-44 | |
| PRK07649 | 195 | PRK07649, PRK07649, para-aminobenzoate/anthranilat | 2e-44 | |
| PRK06774 | 191 | PRK06774, PRK06774, para-aminobenzoate synthase co | 3e-44 | |
| pfam00117 | 186 | pfam00117, GATase, Glutamine amidotransferase clas | 8e-44 | |
| TIGR00566 | 188 | TIGR00566, trpG_papA, glutamine amidotransferase o | 6e-43 | |
| PRK08857 | 193 | PRK08857, PRK08857, para-aminobenzoate synthase co | 9e-42 | |
| PRK08007 | 187 | PRK08007, PRK08007, para-aminobenzoate synthase co | 4e-40 | |
| PLN02335 | 222 | PLN02335, PLN02335, anthranilate synthase | 8e-38 | |
| TIGR01823 | 742 | TIGR01823, PabB-fungal, aminodeoxychorismate synth | 2e-31 | |
| PRK13566 | 720 | PRK13566, PRK13566, anthranilate synthase; Provisi | 2e-29 | |
| TIGR01815 | 717 | TIGR01815, TrpE-clade3, anthranilate synthase, alp | 8e-25 | |
| PRK09522 | 531 | PRK09522, PRK09522, bifunctional glutamine amidotr | 4e-20 | |
| PRK06895 | 190 | PRK06895, PRK06895, putative anthranilate synthase | 4e-16 | |
| PRK05637 | 208 | PRK05637, PRK05637, anthranilate synthase componen | 1e-15 | |
| PRK00758 | 184 | PRK00758, PRK00758, GMP synthase subunit A; Valida | 3e-14 | |
| cd01742 | 181 | cd01742, GATase1_GMP_Synthase, Type 1 glutamine am | 9e-14 | |
| TIGR00888 | 188 | TIGR00888, guaA_Nterm, GMP synthase (glutamine-hyd | 3e-12 | |
| cd01744 | 178 | cd01744, GATase1_CPSase, Small chain of the glutam | 6e-10 | |
| PRK06895 | 190 | PRK06895, PRK06895, putative anthranilate synthase | 2e-08 | |
| cd03128 | 92 | cd03128, GAT_1, Type 1 glutamine amidotransferase | 4e-08 | |
| cd01653 | 115 | cd01653, GATase1, Type 1 glutamine amidotransferas | 4e-08 | |
| COG0518 | 198 | COG0518, GuaA, GMP synthase - Glutamine amidotrans | 6e-08 | |
| PRK12564 | 360 | PRK12564, PRK12564, carbamoyl phosphate synthase s | 6e-08 | |
| COG0505 | 368 | COG0505, CarA, Carbamoylphosphate synthase small s | 7e-08 | |
| TIGR01368 | 358 | TIGR01368, CPSaseIIsmall, carbamoyl-phosphate synt | 1e-06 | |
| PRK12838 | 354 | PRK12838, PRK12838, carbamoyl phosphate synthase s | 2e-06 | |
| PRK00074 | 511 | PRK00074, guaA, GMP synthase; Reviewed | 4e-06 | |
| CHL00197 | 382 | CHL00197, carA, carbamoyl-phosphate synthase argin | 5e-06 | |
| PRK00074 | 511 | PRK00074, guaA, GMP synthase; Reviewed | 5e-05 | |
| cd01741 | 188 | cd01741, GATase1_1, Subgroup of proteins having th | 8e-05 | |
| PRK13170 | 196 | PRK13170, hisH, imidazole glycerol phosphate synth | 0.002 | |
| PRK13141 | 205 | PRK13141, hisH, imidazole glycerol phosphate synth | 0.003 |
| >gnl|CDD|215481 PLN02889, PLN02889, oxo-acid-lyase/anthranilate synthase | Back alignment and domain information |
|---|
Score = 608 bits (1570), Expect = 0.0
Identities = 259/389 (66%), Positives = 298/389 (76%), Gaps = 15/389 (3%)
Query: 1 KLEFVRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVI 60
KLEFVRTLLIDNYDSYTYNIYQELS +NGVPPVVVRNDEWTW ++ YLYEE AFDNIVI
Sbjct: 78 KLEFVRTLLIDNYDSYTYNIYQELSIVNGVPPVVVRNDEWTWEEVYHYLYEEKAFDNIVI 137
Query: 61 SPGPGSPACPEDIGICLRVLLECWDVPILGVCLGHQALGFVHGADIVHAPEPVHGRLSEI 120
SPGPGSP CP DIGICLR+LLEC D+PILGVCLGHQALG+VHGA IVHAPEPVHGRLSEI
Sbjct: 138 SPGPGSPTCPADIGICLRLLLECRDIPILGVCLGHQALGYVHGARIVHAPEPVHGRLSEI 197
Query: 121 VHNGDRLFHDIPSGQNSGFKVVRYHSLIIDADSLPKELIPIAWSNSADGFSYLGTLQSGE 180
HNG RLF DIPSG+NSGFKVVRYHSL+IDA+SLPKEL+PIAW++S+D S+L + +SG
Sbjct: 198 EHNGCRLFDDIPSGRNSGFKVVRYHSLVIDAESLPKELVPIAWTSSSDTLSFLESQKSGL 257
Query: 181 IPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMR-REVLMGIMHSTRPHYGVQFHPE 239
+PDAY+SQ Q S+++KNG+ S +S RM+ ++LMGIMHSTRPHYG+QFHPE
Sbjct: 258 VPDAYESQIGQSGSSDPFSSKLKNGTSWPSSHSERMQNGKILMGIMHSTRPHYGLQFHPE 317
Query: 240 SIATCYGSKILRNFREITEDYWKRLRSPFVKERNVHYTG-----AESLLLREITRTSRSV 294
SIATCYG +I +NFREIT+DYW RLRS ++ RN + T S L + R +
Sbjct: 318 SIATCYGRQIFKNFREITQDYWLRLRSTSLRRRNSNLTANMQVPDASQLFKVPRRG-QLG 376
Query: 295 NNSDELG-REALRPRQLFCDLGDRRFGIQHSRRFEIQRSSIGVKCLKLTWRKFDHLASTV 353
N D LG RE R QL R + + S GVK LKL WRKF+ LA+ V
Sbjct: 377 NGEDALGNRELSRRAQL-------RGSVDVFSLLNLSEPSSGVKFLKLKWRKFNKLAAQV 429
Query: 354 GGARNIFCELFGNNKAENTFWLDSSSTEK 382
GGARNIFCELFG NKAENTFWLDSSSTEK
Sbjct: 430 GGARNIFCELFGKNKAENTFWLDSSSTEK 458
|
Length = 918 |
| >gnl|CDD|153214 cd01743, GATase1_Anthranilate_Synthase, Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase | Back alignment and domain information |
|---|
Score = 235 bits (601), Expect = 9e-77
Identities = 98/247 (39%), Positives = 117/247 (47%), Gaps = 64/247 (25%)
Query: 7 TLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGS 66
LLIDNYDS+TYN+ Q L + G VVVRNDE T ++ E D IVISPGPG
Sbjct: 1 ILLIDNYDSFTYNLVQYLREL-GAEVVVVRNDEITLEEL-----ELLNPDAIVISPGPGH 54
Query: 67 PACPEDIGICLRVLLECWDVPILGVCLGHQALGFVHGADIVHAPEPVHGRLSEIVHNGDR 126
P +R L VPILGVCLGHQA+ G +V APEP+HG+ SEI H+G
Sbjct: 55 PEDAGISLEIIRALAGK--VPILGVCLGHQAIAEAFGGKVVRAPEPMHGKTSEIHHDGSG 112
Query: 127 LFHDIPSGQNSGFKVVRYHSLIIDADSLPKELIPIAWSNSADGFSYLGTLQSGEIPDAYQ 186
LF +P F V RYHSL++D D LP L A + DG
Sbjct: 113 LFKGLP----QPFTVGRYHSLVVDPDPLPDLLEVTASTE--DG----------------- 149
Query: 187 SQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGIMHSTRPHYGVQFHPESIATCYG 246
V+M + H P YGVQFHPESI T YG
Sbjct: 150 ---------------------------------VIMALRHRDLPIYGVQFHPESILTEYG 176
Query: 247 SKILRNF 253
++L NF
Sbjct: 177 LRLLENF 183
|
Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase (ASase). This group contains proteins similar to para-aminobenzoate (PABA) synthase and ASase. These enzymes catalyze similar reactions and produce similar products, PABA and ortho-aminobenzoate (anthranilate). Each enzyme is composed of non-identical subunits: a glutamine amidotransferase subunit (component II) and a subunit that produces an aminobenzoate products (component I). ASase catalyses the synthesis of anthranilate from chorismate and glutamine and is a tetrameric protein comprising two copies each of components I and II. Component II of ASase belongs to the family of triad GTases which hydrolyze glutamine and transfer nascent ammonia between the active sites. In some bacteria, such as Escherichia coli, component II can be much larger than in other organisms, due to the presence of phosphoribosyl-anthranilate transferase (PRTase) activity. PRTase catalyses the second step in tryptophan biosynthesis and results in the addition of 5-phosphoribosyl-1-pyrophosphate to anthranilate to create N-5'-phosphoribosyl-anthranilate. In E.coli, the first step in the conversion of chorismate to PABA involves two proteins: PabA and PabB which co-operate to transfer the amide nitrogen of glutamine to chorismate forming 4-amino-4 deoxychorismate (ADC). PabA acts as a glutamine amidotransferase, supplying an amino group to PabB, which carries out the amination reaction. A third protein PabC then mediates elimination of pyruvate and aromatization to give PABA. Several organisms have bipartite proteins containing fused domains homologous to PabA and PabB commonly called PABA synthases. These hybrid PABA synthases may produce ADC and not PABA. Length = 184 |
| >gnl|CDD|235552 PRK05670, PRK05670, anthranilate synthase component II; Provisional | Back alignment and domain information |
|---|
Score = 223 bits (570), Expect = 5e-72
Identities = 100/247 (40%), Positives = 125/247 (50%), Gaps = 66/247 (26%)
Query: 8 LLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSP 67
LLIDNYDS+TYN+ Q L + G VV RNDE T +I E D IV+SPGPG+P
Sbjct: 3 LLIDNYDSFTYNLVQYLGEL-GAEVVVYRNDEITLEEI-----EALNPDAIVLSPGPGTP 56
Query: 68 ACPEDIGICLRVLLE-CWDVPILGVCLGHQALGFVHGADIVHAPEPVHGRLSEIVHNGDR 126
A + GI L ++ E VPILGVCLGHQA+G G +V A E +HG+ S I H+G
Sbjct: 57 A---EAGISLELIREFAGKVPILGVCLGHQAIGEAFGGKVVRAKEIMHGKTSPIEHDGSG 113
Query: 127 LFHDIPSGQNSGFKVVRYHSLIIDADSLPKELIPIAWSNSADGFSYLGTLQSGEIPDAYQ 186
+F +P + F V RYHSL++D +SLP L AW++ D GEI
Sbjct: 114 IFAGLP----NPFTVTRYHSLVVDRESLPDCLEVTAWTD--D----------GEI----- 152
Query: 187 SQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGIMHSTRPHYGVQFHPESIATCYG 246
MG+ H P YGVQFHPESI T +G
Sbjct: 153 -----------------------------------MGVRHKELPIYGVQFHPESILTEHG 177
Query: 247 SKILRNF 253
K+L NF
Sbjct: 178 HKLLENF 184
|
Length = 189 |
| >gnl|CDD|223586 COG0512, PabA, Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 219 bits (561), Expect = 1e-70
Identities = 95/250 (38%), Positives = 121/250 (48%), Gaps = 65/250 (26%)
Query: 5 VRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGP 64
+ LLIDNYDS+TYN+ Q L + G VVRND+ + I E D IVISPGP
Sbjct: 2 MMILLIDNYDSFTYNLVQYLREL-GAEVTVVRNDDISLELI-----EALKPDAIVISPGP 55
Query: 65 GSPACPEDIGICLRVLLECWD-VPILGVCLGHQALGFVHGADIVHAPEPVHGRLSEIVHN 123
G+P +D GI L ++ +PILGVCLGHQA+ G +V A EP+HG+ S I H+
Sbjct: 56 GTP---KDAGISLELIRRFAGRIPILGVCLGHQAIAEAFGGKVVRAKEPMHGKTSIITHD 112
Query: 124 GDRLFHDIPSGQNSGFKVVRYHSLIIDADSLPKELIPIAWSNSADGFSYLGTLQSGEIPD 183
G LF +P + F V RYHSL++D ++LP+EL A S
Sbjct: 113 GSGLFAGLP----NPFTVTRYHSLVVDPETLPEELEVTAESEDGG--------------- 153
Query: 184 AYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGIMHSTRPHYGVQFHPESIAT 243
V+M + H P YGVQFHPESI T
Sbjct: 154 ------------------------------------VIMAVRHKKLPIYGVQFHPESILT 177
Query: 244 CYGSKILRNF 253
YG +IL NF
Sbjct: 178 EYGHRILENF 187
|
Length = 191 |
| >gnl|CDD|237764 PRK14607, PRK14607, bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 196 bits (499), Expect = 1e-57
Identities = 103/266 (38%), Positives = 127/266 (47%), Gaps = 71/266 (26%)
Query: 6 RTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPG 65
+LIDNYDS+TYNIYQ + + VVRNDE T +I E +IVISPGPG
Sbjct: 1 MIILIDNYDSFTYNIYQYIGELGPEEIEVVRNDEITIEEI-----EALNPSHIVISPGPG 55
Query: 66 SPACPEDIGICLRVLLECW-DVPILGVCLGHQALGFVHGADIVHAPEPVHGRLSEIVHNG 124
P E+ GI + V+ VPILGVCLGHQA+G+ G IVHA +HG+ S I HNG
Sbjct: 56 RP---EEAGISVEVIRHFSGKVPILGVCLGHQAIGYAFGGKIVHAKRILHGKTSPIDHNG 112
Query: 125 DRLFHDIPSGQNSGFKVVRYHSLIIDADSLPKELIPIAWSNSADGFSYLGTLQSGEIPDA 184
LF IP + RYHSL+++ SLP+ L A S+ GEI
Sbjct: 113 KGLFRGIP----NPTVATRYHSLVVEEASLPECLEVTAKSD------------DGEI--- 153
Query: 185 YQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGIMHSTRPHYGVQFHPESIATC 244
MGI H P +GVQFHPESI T
Sbjct: 154 -------------------------------------MGIRHKEHPIFGVQFHPESILTE 176
Query: 245 YGSKILRNF----REITE--DYWKRL 264
G +IL+NF RE + Y K+L
Sbjct: 177 EGKRILKNFLNYQREEIDIKSYLKKL 202
|
Length = 534 |
| >gnl|CDD|214365 CHL00101, trpG, anthranilate synthase component 2 | Back alignment and domain information |
|---|
Score = 166 bits (423), Expect = 4e-50
Identities = 90/248 (36%), Positives = 119/248 (47%), Gaps = 67/248 (27%)
Query: 8 LLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSP 67
L+IDNYDS+TYN+ Q L +N +V RNDE I + +I+ISPGPG P
Sbjct: 3 LIIDNYDSFTYNLVQSLGELN-SDVLVCRNDEIDLSKI-----KNLNIRHIIISPGPGHP 56
Query: 68 ACPEDIGICLRVLLECWD-VPILGVCLGHQALGFVHGADIVHAPEPVHGRLSEIVHNGDR 126
D GI L V+ +PILGVCLGHQ++G++ G I+ AP+P+HG+ S+I HN D
Sbjct: 57 ---RDSGISLDVISSYAPYIPILGVCLGHQSIGYLFGGKIIKAPKPMHGKTSKIYHNHDD 113
Query: 127 LFHDIPSGQNSGFKVVRYHSLIIDADSLPKELIPIAWSNSADGFSYLGTLQSGEIPDAYQ 186
LF +P + F RYHSLIID +LP L AW+ DG
Sbjct: 114 LFQGLP----NPFTATRYHSLIIDPLNLPSPLEITAWTE--DG----------------- 150
Query: 187 SQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGIMHSTRPH-YGVQFHPESIATCY 245
++M H G+QFHPES+ T +
Sbjct: 151 ---------------------------------LIMACRHKKYKMLRGIQFHPESLLTTH 177
Query: 246 GSKILRNF 253
G +ILRNF
Sbjct: 178 GQQILRNF 185
|
Length = 190 |
| >gnl|CDD|181107 PRK07765, PRK07765, para-aminobenzoate synthase component II; Provisional | Back alignment and domain information |
|---|
Score = 153 bits (388), Expect = 1e-44
Identities = 82/253 (32%), Positives = 114/253 (45%), Gaps = 73/253 (28%)
Query: 6 RTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENA----FDNIVIS 61
R L++DNYDS+ +N+ Q L + GV V RND+ L +E A FD +++S
Sbjct: 2 RILVVDNYDSFVFNLVQYLGQL-GVEAEVWRNDDPR-------LADEAAVAAQFDGVLLS 53
Query: 62 PGPGSPACPEDIGICLRVLLECWD--VPILGVCLGHQALGFVHGADIVHAPEPVHGRLSE 119
PGPG+P E G + ++ C P+LGVCLGHQA+G GA + APE +HG+ S
Sbjct: 54 PGPGTP---ERAGASIDMVRACAAAGTPLLGVCLGHQAIGVAFGATVDRAPELLHGKTSS 110
Query: 120 IVHNGDRLFHDIPSGQNSGFKVVRYHSLIIDADSLPKELIPIAWSNSADGFSYLGTLQSG 179
+ H G + +P F RYHSL I ++LP EL A + SG
Sbjct: 111 VHHTGVGVLAGLPDP----FTATRYHSLTILPETLPAELEVTART------------DSG 154
Query: 180 EIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGIMHSTRPHYGVQFHPE 239
V+M + H P +GVQFHPE
Sbjct: 155 ----------------------------------------VIMAVRHRELPIHGVQFHPE 174
Query: 240 SIATCYGSKILRN 252
S+ T G ++L N
Sbjct: 175 SVLTEGGHRMLAN 187
|
Length = 214 |
| >gnl|CDD|181066 PRK07649, PRK07649, para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated | Back alignment and domain information |
|---|
Score = 152 bits (385), Expect = 2e-44
Identities = 88/249 (35%), Positives = 119/249 (47%), Gaps = 66/249 (26%)
Query: 8 LLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSP 67
L+IDNYDS+T+N+ Q L + G VV RNDE T DI E D ++ISPGP SP
Sbjct: 3 LMIDNYDSFTFNLVQFLGEL-GQELVVKRNDEVTISDI-----ENMKPDFLMISPGPCSP 56
Query: 68 ACPEDIGICLRVLLE-CWDVPILGVCLGHQALGFVHGADIVHAPEPVHGRLSEIVHNGDR 126
+ GI + V+ +PI GVCLGHQ++ V G ++V A +HG+ S + H+G
Sbjct: 57 ---NEAGISMEVIRYFAGKIPIFGVCLGHQSIAQVFGGEVVRAERLMHGKTSLMHHDGKT 113
Query: 127 LFHDIPSGQNSGFKVVRYHSLIIDADSLPKELIPIAWSNSADGFSYLGTLQSGEIPDAYQ 186
+F DIP + F RYHSLI+ ++LP L +W+ + GEI
Sbjct: 114 IFSDIP----NPFTATRYHSLIVKKETLPDCLEVTSWT------------EEGEI----- 152
Query: 187 SQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGIMHSTRPHYGVQFHPESIATCYG 246
M I H T P GVQFHPESI T +G
Sbjct: 153 -----------------------------------MAIRHKTLPIEGVQFHPESIMTSHG 177
Query: 247 SKILRNFRE 255
++L+NF
Sbjct: 178 KELLQNFIR 186
|
Length = 195 |
| >gnl|CDD|180689 PRK06774, PRK06774, para-aminobenzoate synthase component II; Provisional | Back alignment and domain information |
|---|
Score = 151 bits (383), Expect = 3e-44
Identities = 96/247 (38%), Positives = 119/247 (48%), Gaps = 62/247 (25%)
Query: 8 LLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSP 67
LLIDNYDS+TYN+YQ + G +V RNDE DI E+ A ++VISPGP +P
Sbjct: 3 LLIDNYDSFTYNLYQYFCEL-GTEVMVKRNDELQLTDI-----EQLAPSHLVISPGPCTP 56
Query: 68 ACPEDIGICLRVLLECWD-VPILGVCLGHQALGFVHGADIVHAPEPVHGRLSEIVHNGDR 126
+ GI L V+ D +PILGVCLGHQALG GA +V A + +HG+ S I H+G
Sbjct: 57 ---NEAGISLAVIRHFADKLPILGVCLGHQALGQAFGARVVRARQVMHGKTSAICHSGQG 113
Query: 127 LFHDIPSGQNSGFKVVRYHSLIIDADSLPKELIPIAWSNSADGFSYLGTLQSGEIPDAYQ 186
+F G N V RYHSL+I ADSLP AWS G
Sbjct: 114 VFR----GLNQPLTVTRYHSLVIAADSLPGCFELTAWSER-GG----------------- 151
Query: 187 SQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGIMHSTRPHYGVQFHPESIATCYG 246
+ +MGI H T P GVQFHPESI + G
Sbjct: 152 ------------------------------EMDEIMGIRHRTLPLEGVQFHPESILSEQG 181
Query: 247 SKILRNF 253
++L NF
Sbjct: 182 HQLLDNF 188
|
Length = 191 |
| >gnl|CDD|215729 pfam00117, GATase, Glutamine amidotransferase class-I | Back alignment and domain information |
|---|
Score = 150 bits (380), Expect = 8e-44
Identities = 80/249 (32%), Positives = 106/249 (42%), Gaps = 70/249 (28%)
Query: 8 LLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSP 67
LLIDN DS+TYN+ + L + GV VV ND +I E D I+ISPGPGSP
Sbjct: 1 LLIDNGDSFTYNLARALREL-GVEVEVVPNDT-PAEEI-----LELNPDGIIISPGPGSP 53
Query: 68 ACPEDIGICLRVLLEC--WDVPILGVCLGHQALGFVHGADIVHAPE-PVHGRLSEIVHNG 124
+G + + E +PILG+CLGHQ L G ++ A + P HG+ S + H+
Sbjct: 54 G---ALGGAIEAIKELRENKIPILGICLGHQLLALAFGGKVIKAKKEPHHGKNSPVGHDK 110
Query: 125 DRLFHDIPSGQNSGFKVVRYHSLIIDADSLPKELIPIAWSNSADGFSYLGTLQSGEIPDA 184
+ G + F V RYHS +D D+LP L A S +G
Sbjct: 111 GLFY-----GLPNVFIVRRYHSYAVDPDTLPDGLEVTAA--SENG--------------- 148
Query: 185 YQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGIMHSTRPHYGVQFHPESIATC 244
+M I H P +GVQFHPES T
Sbjct: 149 -----------------------------------GIMAIRHKENPIFGVQFHPESSLTP 173
Query: 245 YGSKILRNF 253
G ++L NF
Sbjct: 174 GGPELLFNF 182
|
Length = 186 |
| >gnl|CDD|233027 TIGR00566, trpG_papA, glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase | Back alignment and domain information |
|---|
Score = 148 bits (374), Expect = 6e-43
Identities = 83/247 (33%), Positives = 108/247 (43%), Gaps = 65/247 (26%)
Query: 8 LLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSP 67
L+IDNYDS+TYN+ Q + G VV RND T ++I E IVISPGP +P
Sbjct: 3 LMIDNYDSFTYNLVQYFCEL-GAEVVVKRNDSLTLQEI-----EALLPLLIVISPGPCTP 56
Query: 68 ACPEDIGICLRVLLE-CWDVPILGVCLGHQALGFVHGADIVHAPEPVHGRLSEIVHNGDR 126
+ GI L + +PILGVCLGHQA+G G D+V A +HG+ SEI HNG
Sbjct: 57 N---EAGISLEAIRHFAGKLPILGVCLGHQAMGQAFGGDVVRANTVMHGKTSEIEHNGAG 113
Query: 127 LFHDIPSGQNSGFKVVRYHSLIIDADSLPKELIPIAWSNSADGFSYLGTLQSGEIPDAYQ 186
+F G + RYHSL+++ ++LP AW
Sbjct: 114 IF----RGLFNPLTATRYHSLVVEPETLPTCFPVTAWEE--------------------- 148
Query: 187 SQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGIMHSTRPHYGVQFHPESIATCYG 246
+M I H P GVQFHPESI + G
Sbjct: 149 ------------------------------ENIEIMAIRHRDLPLEGVQFHPESILSEQG 178
Query: 247 SKILRNF 253
++L NF
Sbjct: 179 HQLLANF 185
|
This model describes the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. This model covers a subset of the sequences described by the PFAM model GATase. Length = 188 |
| >gnl|CDD|181566 PRK08857, PRK08857, para-aminobenzoate synthase component II; Provisional | Back alignment and domain information |
|---|
Score = 145 bits (366), Expect = 9e-42
Identities = 88/247 (35%), Positives = 113/247 (45%), Gaps = 61/247 (24%)
Query: 8 LLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSP 67
L+IDNYDS+TYN+YQ + G VVRNDE I E ++VISPGP +P
Sbjct: 3 LMIDNYDSFTYNLYQYFCEL-GAQVKVVRNDEIDIDGI-----EALNPTHLVISPGPCTP 56
Query: 68 ACPEDIGICLRVLLECWD-VPILGVCLGHQALGFVHGADIVHAPEPVHGRLSEIVHNGDR 126
+ GI L+ + +PILGVCLGHQA+ V G +V A + +HG+ S I H G
Sbjct: 57 ---NEAGISLQAIEHFAGKLPILGVCLGHQAIAQVFGGQVVRARQVMHGKTSPIRHTGRS 113
Query: 127 LFHDIPSGQNSGFKVVRYHSLIIDADSLPKELIPIAWSNSADGFSYLGTLQSGEIPDAYQ 186
+F G N+ V RYHSL++ D+LP+ AW+ DG EI
Sbjct: 114 VF----KGLNNPLTVTRYHSLVVKNDTLPECFELTAWTELEDG-------SMDEI----- 157
Query: 187 SQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGIMHSTRPHYGVQFHPESIATCYG 246
MG H T P VQFHPESI T G
Sbjct: 158 -----------------------------------MGFQHKTLPIEAVQFHPESIKTEQG 182
Query: 247 SKILRNF 253
++L NF
Sbjct: 183 HQLLANF 189
|
Length = 193 |
| >gnl|CDD|181194 PRK08007, PRK08007, para-aminobenzoate synthase component II; Provisional | Back alignment and domain information |
|---|
Score = 140 bits (354), Expect = 4e-40
Identities = 87/247 (35%), Positives = 114/247 (46%), Gaps = 66/247 (26%)
Query: 8 LLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSP 67
LLIDNYDS+T+N+YQ + G +V RND T DI + IVISPGP +P
Sbjct: 3 LLIDNYDSFTWNLYQYFCEL-GADVLVKRNDALTLADI-----DALKPQKIVISPGPCTP 56
Query: 68 ACPEDIGICLRVLLE-CWDVPILGVCLGHQALGFVHGADIVHAPEPVHGRLSEIVHNGDR 126
++ GI L V+ +PILGVCLGHQA+ G +V A + +HG+ S I HNG+
Sbjct: 57 ---DEAGISLDVIRHYAGRLPILGVCLGHQAMAQAFGGKVVRAAKVMHGKTSPITHNGEG 113
Query: 127 LFHDIPSGQNSGFKVVRYHSLIIDADSLPKELIPIAWSNSADGFSYLGTLQSGEIPDAYQ 186
+F G + V RYHSL+++ DSLP AWS ++ EI
Sbjct: 114 VF----RGLANPLTVTRYHSLVVEPDSLPACFEVTAWS------------ETREI----- 152
Query: 187 SQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGIMHSTRPHYGVQFHPESIATCYG 246
MGI H GVQFHPESI + G
Sbjct: 153 -----------------------------------MGIRHRQWDLEGVQFHPESILSEQG 177
Query: 247 SKILRNF 253
++L NF
Sbjct: 178 HQLLANF 184
|
Length = 187 |
| >gnl|CDD|177969 PLN02335, PLN02335, anthranilate synthase | Back alignment and domain information |
|---|
Score = 135 bits (342), Expect = 8e-38
Identities = 82/260 (31%), Positives = 119/260 (45%), Gaps = 72/260 (27%)
Query: 8 LLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSP 67
++IDNYDS+TYN+ Q + + G V RNDE T ++ + ++ISPGPG+P
Sbjct: 22 IVIDNYDSFTYNLCQYMGEL-GCHFEVYRNDELTVEEL-----KRKNPRGVLISPGPGTP 75
Query: 68 ACPEDIGICLRVLLECW-DVPILGVCLGHQALGFVHGADIVHAPEPV-HGRLSEIVHN-- 123
+D GI L+ +LE VP+ GVC+G Q +G G IV +P V HG+ S + ++
Sbjct: 76 ---QDSGISLQTVLELGPLVPLFGVCMGLQCIGEAFGGKIVRSPFGVMHGKSSPVHYDEK 132
Query: 124 -GDRLFHDIPSGQNSGFKVVRYHSLIIDADSLPKELIPI-AWSNSADGFSYLGTLQSGEI 181
+ LF +P + F RYHSL+I+ D+ P + + + AW+ DG
Sbjct: 133 GEEGLFSGLP----NPFTAGRYHSLVIEKDTFPSDELEVTAWTE--DG------------ 174
Query: 182 PDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGIMHSTRPHY-GVQFHPES 240
++M H H GVQFHPES
Sbjct: 175 --------------------------------------LIMAARHRKYKHIQGVQFHPES 196
Query: 241 IATCYGSKILRNFREITEDY 260
I T G I+RNF +I E
Sbjct: 197 IITTEGKTIVRNFIKIIEKK 216
|
Length = 222 |
| >gnl|CDD|233588 TIGR01823, PabB-fungal, aminodeoxychorismate synthase, fungal clade | Back alignment and domain information |
|---|
Score = 126 bits (317), Expect = 2e-31
Identities = 73/258 (28%), Positives = 103/258 (39%), Gaps = 64/258 (24%)
Query: 8 LLIDNYDSYTYNIYQ--ELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPG 65
L ID+YDS+TYN+ + E T V V +D + L FD IV+ PGPG
Sbjct: 9 LFIDSYDSFTYNVVRLLEQQTDISVHVTTVHSD-TFQDQLLELLPL---FDAIVVGPGPG 64
Query: 66 SPACPEDIGICLRV--LLECWDVPILGVCLGHQALGFVHGADIVHAPEPVHGRLSEIVHN 123
+P +D+GI + L +VP+LG+CLG Q+L GADI P P HG++ E+ N
Sbjct: 65 NPNNAQDMGIISELWELANLDEVPVLGICLGFQSLCLAQGADISRLPTPKHGQVYEMHTN 124
Query: 124 GDRLFHDIPSGQNSGFKVVRYHSLIIDADSLPKELIPIAWSNSADGFSYLGTLQSGEIPD 183
+F + K RYHSL + + D
Sbjct: 125 DAAIFCGL-----FSVKSTRYHSLYANPEG----------------------------ID 151
Query: 184 AYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGIMHSTRPHYGVQFHPESIAT 243
L D I LM +P +GVQ+HPES +
Sbjct: 152 ----TLLPLCLTEDEEGII------------------LMSAQTKKKPWFGVQYHPESCCS 189
Query: 244 CYGS-KILRNFREITEDY 260
GS K++ NF ++
Sbjct: 190 ELGSGKLVSNFLKLAFIN 207
|
This model represents the fungal clade of a para-aminobenzoate synthesis enzyme, aminodeoxychorismate synthase, which acts on chorismate in a pathway that yields PABA, a precursor of folate. Length = 742 |
| >gnl|CDD|237429 PRK13566, PRK13566, anthranilate synthase; Provisional | Back alignment and domain information |
|---|
Score = 119 bits (301), Expect = 2e-29
Identities = 74/258 (28%), Positives = 101/258 (39%), Gaps = 81/258 (31%)
Query: 5 VRTLLIDNYDSYTY---NIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVIS 61
R LL+D+ DS+ + N +++ G VR + + D +V+S
Sbjct: 527 KRVLLVDHEDSFVHTLANYFRQT----GAEVTTVRYGF------AEEMLDRVNPDLVVLS 576
Query: 62 PGPGSPA---CPEDIGICLRVLLECWDVPILGVCLGHQALGFVHGADIVHAPEPVHGRLS 118
PGPG P+ C I L ++PI GVCLG QA+ G ++ P+HG+ S
Sbjct: 577 PGPGRPSDFDCKATIDAALAR-----NLPIFGVCLGLQAIVEAFGGELGQLAYPMHGKPS 631
Query: 119 EI-VHNGDRLFHDIPSGQNSGFKVVRYHSLIIDADSLPKELIPIAWSNSADGFSYLGTLQ 177
I V RLF +P F V RYHSL D ++LP EL+ A + DG
Sbjct: 632 RIRVRGPGRLFSGLP----EEFTVGRYHSLFADPETLPDELLVTA--ETEDG-------- 677
Query: 178 SGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGIMHSTRPHYGVQFH 237
V+M I H T P VQFH
Sbjct: 678 ------------------------------------------VIMAIEHKTLPVAAVQFH 695
Query: 238 PESIATCYGS---KILRN 252
PESI T G +I+ N
Sbjct: 696 PESIMTLGGDVGLRIIEN 713
|
Length = 720 |
| >gnl|CDD|130874 TIGR01815, TrpE-clade3, anthranilate synthase, alpha proteobacterial clade | Back alignment and domain information |
|---|
Score = 106 bits (265), Expect = 8e-25
Identities = 73/266 (27%), Positives = 95/266 (35%), Gaps = 72/266 (27%)
Query: 5 VRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGP 64
R LL+D+ DS+ + + L G +R+ ++E D +V+SPGP
Sbjct: 517 RRILLVDHEDSFVHTLANYLRQ-TGASVTTLRHS------HAEAAFDERRPDLVVLSPGP 569
Query: 65 GSPA---CPEDIGICLRVLLECWDVPILGVCLGHQALGFVHGADIVHAPEPVHGRLSEI- 120
G PA I L +P+ GVCLG Q + G + PEPVHG+ S I
Sbjct: 570 GRPADFDVAGTIDAALAR-----GLPVFGVCLGLQGMVEAFGGALDVLPEPVHGKASRIR 624
Query: 121 VHNGDRLFHDIPSGQNSGFKVVRYHSLIIDADSLPKELIPIAWSNSADGFSYLGTLQSGE 180
V D LF +P V RYHSL D LP EL A SADG
Sbjct: 625 VLGPDALFAGLP----ERLTVGRYHSLFARRDRLPAELTVTA--ESADG----------- 667
Query: 181 IPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGIMHSTRPHYGVQFHPES 240
++M I H P VQFHPES
Sbjct: 668 ---------------------------------------LIMAIEHRRLPLAAVQFHPES 688
Query: 241 IATCYGSKILRNFREITEDYWKRLRS 266
I T G L + + +
Sbjct: 689 IMTLDGGAGLAMIGNVVDRLAAGALT 714
|
This model represents a small clade of anthranilate synthases from alpha proteobacteria and Nostoc (a cyanobacterium). This enzyme is the first step in the pathway for the biosynthesis of tryprophan from chorismate [Amino acid biosynthesis, Aromatic amino acid family]. Length = 717 |
| >gnl|CDD|181927 PRK09522, PRK09522, bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 92.0 bits (228), Expect = 4e-20
Identities = 73/245 (29%), Positives = 105/245 (42%), Gaps = 68/245 (27%)
Query: 8 LLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSP 67
LL+DN DS+TYN+ +L + NG V+ RN I R N +++SPGPG P
Sbjct: 5 LLLDNIDSFTYNLADQLRS-NGHNVVIYRNHIPAQTLIERLATMSNPV--LMLSPGPGVP 61
Query: 68 ACPEDIGICLRVLLECW--DVPILGVCLGHQALGFVHGADIVHAPEPVHGRLSEIVHNGD 125
+ + G C+ LL +PI+G+CLGHQA+ +G + A E +HG+ S I H+G
Sbjct: 62 S---EAG-CMPELLTRLRGKLPIIGICLGHQAIVEAYGGYVGQAGEILHGKASSIEHDGQ 117
Query: 126 RLFHDIPSGQNSGFKVVRYHSLIIDADSLPKELIPIAWSNSADGFSYLGTLQSGEIPDAY 185
+F +G + V RYHSL+ SN G +
Sbjct: 118 AMF----AGLTNPLPVARYHSLV--------------GSNIPAGLTI------------- 146
Query: 186 QSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGIMHSTRPHYGVQFHPESIATCY 245
N + N M +M + H G QFHPESI T
Sbjct: 147 ------------------NAHF------NGM----VMAVRHDADRVCGFQFHPESILTTQ 178
Query: 246 GSKIL 250
G+++L
Sbjct: 179 GARLL 183
|
Length = 531 |
| >gnl|CDD|235882 PRK06895, PRK06895, putative anthranilate synthase component II; Provisional | Back alignment and domain information |
|---|
Score = 75.5 bits (186), Expect = 4e-16
Identities = 51/161 (31%), Positives = 79/161 (49%), Gaps = 21/161 (13%)
Query: 6 RTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPG 65
+ L+I+N+DS+T+N+ + + GVP VV ++ ++ EN F +I+ISPGP
Sbjct: 3 KLLIINNHDSFTFNLVDLIRKL-GVPMQVVNVEDLDLDEV------EN-FSHILISPGPD 54
Query: 66 SP-ACPEDIGICLRVLLECW--DVPILGVCLGHQALGFVHGADIVHAPEPVHGRLSE-IV 121
P A P+ L +LE + ILGVCLGHQ L G ++ + HG+ V
Sbjct: 55 VPRAYPQ-----LFAMLERYHQHKSILGVCLGHQTLCEFFGGELYNLNNVRHGQQRPLKV 109
Query: 122 HNGDRLFHDIPSGQNSGFKVVRYHSLIIDADSLPKELIPIA 162
+ LF +P F + YHS + ++ P L A
Sbjct: 110 RSNSPLFDGLP----EEFNIGLYHSWAVSEENFPTPLEITA 146
|
Length = 190 |
| >gnl|CDD|180178 PRK05637, PRK05637, anthranilate synthase component II; Provisional | Back alignment and domain information |
|---|
Score = 74.9 bits (184), Expect = 1e-15
Identities = 67/249 (26%), Positives = 99/249 (39%), Gaps = 61/249 (24%)
Query: 8 LLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSP 67
+LIDN+DS+ YN+ + + G V RN + L D I +SPGPG P
Sbjct: 5 VLIDNHDSFVYNLVDAFA-VAGYKCTVFRNTV----PVEEILAANP--DLICLSPGPGHP 57
Query: 68 ACPEDIGICLRVLLE--CWDVPILGVCLGHQALGFVHGADIVHAPEPVHGRLSEIVHNGD 125
D G + L++ +P+LG+CLG QAL HG V PVHG ++
Sbjct: 58 R---DAG-NMMALIDRTLGQIPLLGICLGFQALLEHHGGK-VEPCGPVHGTTDNMILT-- 110
Query: 126 RLFHDIPSGQNSGFKVVRYHSLIIDAD----SLPKELIPIAWSNSADGFSYLGTLQSGEI 181
++G + + L D + +P +PIA +S L
Sbjct: 111 ----------DAGVQSPVFAGLATDVEPDHPEIPGRKVPIARYHS---------LGCVVA 151
Query: 182 PDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGIMHSTRPHYGVQFHPESI 241
PD +S L S++I V+M + G+QFHPES+
Sbjct: 152 PDGMES-------LGTCSSEIG---------------PVIMAAETTDGKAIGLQFHPESV 189
Query: 242 ATCYGSKIL 250
+ G IL
Sbjct: 190 LSPTGPIIL 198
|
Length = 208 |
| >gnl|CDD|179112 PRK00758, PRK00758, GMP synthase subunit A; Validated | Back alignment and domain information |
|---|
Score = 70.3 bits (173), Expect = 3e-14
Identities = 65/257 (25%), Positives = 98/257 (38%), Gaps = 79/257 (30%)
Query: 8 LLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSP 67
+++DN Y + I++ L + GV ++ N +I + D +++S GP
Sbjct: 3 VVVDNGGQYNHLIHRTLRYL-GVDAKIIPNTT-PVEEI------KAFEDGLILSGGPDI- 53
Query: 68 ACPEDIGICLRVLLECWDVPILGVCLGHQALGFVHGADIVHAPEPVHGRLSEIVHNGDRL 127
E G C L E DVPILG+CLGHQ + G ++
Sbjct: 54 ---ERAGNCPEYLKE-LDVPILGICLGHQLIAKAFGGEVG-------------------- 89
Query: 128 FHDIPSGQNSGFKVVRYHSLIIDADS----LPKELIPIAWSNSADGFSYLGTLQSGEIPD 183
G+ + +V I+D D LP E+ W++ AD + E+PD
Sbjct: 90 -----RGEYGEYALVEVE--ILDEDDILKGLPPEIR--VWASHAD--------EVKELPD 132
Query: 184 AYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGIMHSTRPHYGVQFHPESIAT 243
+ S+ E + H +P YGVQFHPE T
Sbjct: 133 ----------------------GFEILARSDICEVE---AMKHKEKPIYGVQFHPEVAHT 167
Query: 244 CYGSKILRNFREITEDY 260
YG +I +NF EI Y
Sbjct: 168 EYGEEIFKNFLEICGKY 184
|
Length = 184 |
| >gnl|CDD|153213 cd01742, GATase1_GMP_Synthase, Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase | Back alignment and domain information |
|---|
Score = 68.7 bits (169), Expect = 9e-14
Identities = 43/209 (20%), Positives = 67/209 (32%), Gaps = 72/209 (34%)
Query: 51 EENAFDNIVISPGP------GSPACPEDIGICLRVLLECWDVPILGVCLGHQALGFVHGA 104
+ I++S GP +P +I E VP+LG+C G Q + G
Sbjct: 38 KLKNPKGIILSGGPSSVYEEDAPRVDPEI-------FEL-GVPVLGICYGMQLIAKALGG 89
Query: 105 DIVHAPEPVHGRLSEIVHNGDRLFHDIPSGQNSGFKVVRYHSLIIDADSLPKELIPIAWS 164
+ + +G+ + + LF G V H D + K +P
Sbjct: 90 KVERGDKREYGKAEIEIDDSSPLF----EGLPDEQTVWMSH-----GDEVVK--LP---- 134
Query: 165 NSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGI 224
+GF + + SD + I
Sbjct: 135 ---EGFKVIAS--------------------SDNC-----------PVA---------AI 151
Query: 225 MHSTRPHYGVQFHPESIATCYGSKILRNF 253
+ + YGVQFHPE T G +IL+NF
Sbjct: 152 ANEEKKIYGVQFHPEVTHTEKGKEILKNF 180
|
Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. GMP synthetase is a glutamine amidotransferase from the de novo purine biosynthetic pathway. Glutamine amidotransferase (GATase) activity catalyse the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. GMP synthetase catalyses the amination of the nucleotide precursor xanthosine 5'-monophospahte to form GMP. GMP synthetase belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site. Length = 181 |
| >gnl|CDD|129966 TIGR00888, guaA_Nterm, GMP synthase (glutamine-hydrolyzing), N-terminal domain or A subunit | Back alignment and domain information |
|---|
Score = 64.6 bits (158), Expect = 3e-12
Identities = 57/249 (22%), Positives = 89/249 (35%), Gaps = 73/249 (29%)
Query: 8 LLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGS- 66
L++D YT I + L + GV +V N +I E I++S GP S
Sbjct: 2 LVLDFGSQYTQLIARRLREL-GVYSELVPNTT-PLEEI-----REKNPKGIILSGGPSSV 54
Query: 67 --PACPEDIGICLRVLLECWDVPILGVCLGHQALGFVHGADIVHAPEPVHGRLSEIVHNG 124
P + E VP+LG+C G Q + G ++ A + +G+ + +
Sbjct: 55 YAENAPR----ADEKIFEL-GVPVLGICYGMQLMAKQLGGEVGRAEKREYGKAELEILDE 109
Query: 125 DRLFHDIPSGQNSGFKVVRYHSLIIDADSLPKELIPIAWSNSADGFSYLGTLQSGEIPDA 184
D LF LP E W + D E+P+
Sbjct: 110 DDLFRG-----------------------LPDEST--VWMSHGDKVK--------ELPEG 136
Query: 185 YQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGIMHSTRPHYGVQFHPESIATC 244
+ K+L + + + + H +P YGVQFHPE T
Sbjct: 137 F------KVLATSDNCPVA-------------------AMAHEEKPIYGVQFHPEVTHTE 171
Query: 245 YGSKILRNF 253
YG+++L NF
Sbjct: 172 YGNELLENF 180
|
This protein of purine de novo biosynthesis is well-conserved. However, it appears to split into two separate polypeptide chains in most of the Archaea. This N-terminal region would be the smaller subunit [Purines, pyrimidines, nucleosides, and nucleotides, Purine ribonucleotide biosynthesis]. Length = 188 |
| >gnl|CDD|153215 cd01744, GATase1_CPSase, Small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II | Back alignment and domain information |
|---|
Score = 57.5 bits (140), Expect = 6e-10
Identities = 46/158 (29%), Positives = 60/158 (37%), Gaps = 48/158 (30%)
Query: 18 YNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPA-CPEDIGIC 76
+NI +EL G VV + +I + D I +S GPG PA E I
Sbjct: 10 HNILRELLK-RGCEVTVVPYN-TDAEEILKLDP-----DGIFLSNGPGDPALLDEAIKTV 62
Query: 77 LRVLLECWDVPILGVCLGHQALGFVHGADIV-----HAPEPVHGRLSEIVHNGDRLFH-- 129
++L + +PI G+CLGHQ L GA H G N H
Sbjct: 63 RKLLGK--KIPIFGICLGHQLLALALGAKTYKMKFGH-----RG------SN-----HPV 104
Query: 130 -DIPSG------QNSGFKVVRYHSLIIDADSLPKELIP 160
D+ +G QN G+ V D DSLP L
Sbjct: 105 KDLITGRVYITSQNHGYAV--------DPDSLPGGLEV 134
|
This group of sequences represents the small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. CPSase II catalyzes the production of carbomyl phosphate (CP) from bicarbonate, glutamine and two molecules of MgATP. The reaction is believed to proceed by a series of four biochemical reactions involving a minimum of three discrete highly reactive intermediates. The synthesis of CP is critical for the initiation of two separate biosynthetic pathways. In one CP is coupled to aspartate, its carbon and nitrogen nuclei ultimately incorporated into the aromatic moieties of pyrimidine nucleotides. In the second pathway CP is condensed with ornithine at the start of the urea cycle and is utilized for the detoxification of ammonia and biosynthesis of arginine. CPSases may be encoded by one or by several genes, depending on the species. The E.coli enzyme is a heterodimer consisting of two polypeptide chains referred to as the small and large subunit. Ammonia an intermediate during the biosynthesis of carbomyl phosphate produced by the hydrolysis of glutamine in the small subunit of the enzyme is delivered via a molecular tunnel between the remotely located carboxyphosphate active site in the large subunit. CPSase IIs belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site. This group also contains the sequence from the mammalian urea cycle form which has lost the active site Cys, resulting in an ammonia-dependent form, CPSase I. Length = 178 |
| >gnl|CDD|235882 PRK06895, PRK06895, putative anthranilate synthase component II; Provisional | Back alignment and domain information |
|---|
Score = 53.6 bits (129), Expect = 2e-08
Identities = 20/38 (52%), Positives = 26/38 (68%)
Query: 219 EVLMGIMHSTRPHYGVQFHPESIATCYGSKILRNFREI 256
V+M + H T P YGVQFHPES + +G +ILRN+ I
Sbjct: 151 NVVMAMQHKTLPIYGVQFHPESYISEFGEQILRNWLAI 188
|
Length = 190 |
| >gnl|CDD|153222 cd03128, GAT_1, Type 1 glutamine amidotransferase (GATase1)-like domain | Back alignment and domain information |
|---|
Score = 50.3 bits (120), Expect = 4e-08
Identities = 22/96 (22%), Positives = 35/96 (36%), Gaps = 10/96 (10%)
Query: 8 LLIDNYDSYT---YNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGP 64
++ S + L G VV D + + +D +++ GP
Sbjct: 2 AVLLFGGSEELELASPLDALRE-AGAEVDVVSPDG----GPVESDVDLDDYDGLILPGGP 56
Query: 65 GSPACPEDIGICLRVLLEC--WDVPILGVCLGHQAL 98
G+P L +L E P+LG+CLG Q L
Sbjct: 57 GTPDDLAWDEALLALLREAAAAGKPVLGICLGAQLL 92
|
Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA, the A4 beta-galactosidase middle domain and peptidase E. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase (CPSase), cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. For Pyrococcus horikoshii PH1704, the Cys of the nucleophile elbow together with a different His and, a Glu from an adjacent monomer form a catalytic triad different from the typical GATase1 triad. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad of typical GATase1 domains, by having a Ser in place of the reactive Cys at the nucleophile elbow. The E. coli HP-II C-terminal domain, S. meliloti Rm1021 ThuA and the A4 beta-galactosidase middle domain lack the catalytic triad typical GATaseI domains. GATase1-like domains can occur either as single polypeptides, as in Class I glutamine amidotransferases, or as domains in a much larger multifunctional synthase protein, such as CPSase. Peptidase E has a circular permutation in the common core of a typical GTAse1 domain. Length = 92 |
| >gnl|CDD|153210 cd01653, GATase1, Type 1 glutamine amidotransferase (GATase1)-like domain | Back alignment and domain information |
|---|
Score = 50.7 bits (121), Expect = 4e-08
Identities = 22/96 (22%), Positives = 34/96 (35%), Gaps = 10/96 (10%)
Query: 8 LLIDNYDSYT---YNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGP 64
++ + L G VV D + + +D +++ GP
Sbjct: 2 AVLLFPGFEELELASPLDALRE-AGAEVDVVSPDG----GPVESDVDLDDYDGLILPGGP 56
Query: 65 GSPACPEDIGICLRVLLEC--WDVPILGVCLGHQAL 98
G+P L +L E PILG+CLG Q L
Sbjct: 57 GTPDDLARDEALLALLREAAAAGKPILGICLGAQLL 92
|
Type 1 glutamine amidotransferase (GATase1)-like domain. This group includes proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA. and, the A4 beta-galactosidase middle domain. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. For Pyrococcus horikoshii PH1704, the Cys of the nucleophile elbow together with a different His and, a Glu from an adjacent monomer form a catalytic triad different from the typical GATase1 triad. The E. coli HP-II C-terminal domain, S. meliloti Rm1021 ThuA and the A4 beta-galactosidase middle domain lack the catalytic triad typical GATaseI domains. GATase1-like domains can occur either as single polypeptides, as in Class I glutamine amidotransferases, or as domains in a much larger multifunctional synthase protein, such as CPSase. Length = 115 |
| >gnl|CDD|223592 COG0518, GuaA, GMP synthase - Glutamine amidotransferase domain [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Score = 52.3 bits (126), Expect = 6e-08
Identities = 48/210 (22%), Positives = 68/210 (32%), Gaps = 73/210 (34%)
Query: 54 AFDNIVISPGPGS--------PACPEDIGICLRVLLECWDVPILGVCLGHQALGFVHGAD 105
+ D I+IS GP S P + I + P+LG+CLGHQ L G
Sbjct: 45 SPDGIIISGGPMSVYDEDPWLPREKDLI---KDAGVP--GKPVLGICLGHQLLAKALGGK 99
Query: 106 IVHAPEPVHGRLS-EIVHNGDRLFHDIPSGQNSGFKVVRYHSLIIDADSLPKELIPIAWS 164
+ P+ G E+ D LF LP +
Sbjct: 100 VERGPKREIGWTPVELTEGDDPLFAG-----------------------LPDLFTT-VFM 135
Query: 165 NSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGI 224
+ D E+P+ +L S S N ++R+
Sbjct: 136 SHGDTVV--------ELPEGA------VVLAS--SETCPNQAFRY--------------- 164
Query: 225 MHSTRPHYGVQFHPESIATCYGSKILRNFR 254
+ YGVQFHPE + YG +L NF
Sbjct: 165 ---GKRAYGVQFHPE-VTHEYGEALLENFA 190
|
Length = 198 |
| >gnl|CDD|237139 PRK12564, PRK12564, carbamoyl phosphate synthase small subunit; Reviewed | Back alignment and domain information |
|---|
Score = 53.5 bits (130), Expect = 6e-08
Identities = 40/115 (34%), Positives = 47/115 (40%), Gaps = 33/115 (28%)
Query: 56 DNIVISPGPGSPA-CPEDIGICLRVLLECWDVPILGVCLGHQALGFVHGADIV------- 107
D + +S GPG PA I + +R LLE +PI G+CLGHQ L GA
Sbjct: 220 DGVFLSNGPGDPAALDYAIEM-IRELLEK-KIPIFGICLGHQLLALALGAKTYKMKFGHR 277
Query: 108 ---HAPEPVHGRLSEIVHNGDRLFHDIPSGQNSGFKVVRYHSLIIDADSLPKELI 159
H PV + V I S QN GF V D DSLP L
Sbjct: 278 GANH---PVKDLETGKVE--------ITS-QNHGFAV--------DEDSLPANLE 312
|
Length = 360 |
| >gnl|CDD|223579 COG0505, CarA, Carbamoylphosphate synthase small subunit [Amino acid transport and metabolism / Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Score = 53.3 bits (129), Expect = 7e-08
Identities = 50/200 (25%), Positives = 65/200 (32%), Gaps = 92/200 (46%)
Query: 56 DNIVISPGPGSPA-CPEDIGICLRVLLECWDVPILGVCLGHQALGFVHGADIV-----HA 109
D I +S GPG PA I ++ LL +PI G+CLGHQ L GA H
Sbjct: 222 DGIFLSNGPGDPAPLDYAIET-IKELLGT-KIPIFGICLGHQLLALALGAKTYKMKFGH- 278
Query: 110 PEPVHGRLSEIVHNGDRLFH---DIPSG------QNSGFKVVRYHSLIIDADSLPKELIP 160
G N H D+ +G QN G+ V D DSL + L
Sbjct: 279 ----RG------AN-----HPVKDLDTGRVYITSQNHGYAV--------DEDSLVETLK- 314
Query: 161 IAWSNSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREV 220
+ N D GT++
Sbjct: 315 VTHVNLND-----GTVE------------------------------------------- 326
Query: 221 LMGIMHSTRPHYGVQFHPES 240
GI H P + VQ+HPE+
Sbjct: 327 --GIRHKDLPAFSVQYHPEA 344
|
Length = 368 |
| >gnl|CDD|233378 TIGR01368, CPSaseIIsmall, carbamoyl-phosphate synthase, small subunit | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 1e-06
Identities = 53/198 (26%), Positives = 68/198 (34%), Gaps = 88/198 (44%)
Query: 56 DNIVISPGPGSPA-CPEDIGICLRVLLECWDVPILGVCLGHQ----ALG-------FVH- 102
D I +S GPG PA I +R LLE +PI G+CLGHQ A G F H
Sbjct: 216 DGIFLSNGPGDPAAVKPAIET-IRKLLE--KIPIFGICLGHQLLALAFGAKTYKMKFGHR 272
Query: 103 GADIVHAPEPVHGRLSEIVHNGDRLFHDIPSGQNSGFKVVRYHSLIIDADSLPKELIPIA 162
G + PV ++ V I S QN G+ V D DSLP + +
Sbjct: 273 GGNH-----PVKDLITGRVE--------ITS-QNHGYAV--------DPDSLPAGDLEVT 310
Query: 163 WSNSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLM 222
N D GT++
Sbjct: 311 HVNLND-----GTVE--------------------------------------------- 320
Query: 223 GIMHSTRPHYGVQFHPES 240
GI H P + VQ+HPE+
Sbjct: 321 GIRHKDLPVFSVQYHPEA 338
|
This model represents the whole of the small chain of the glutamine-dependent form (EC 6.3.5.5) of carbamoyl phosphate synthase, CPSase II. The C-terminal domain has glutamine amidotransferase activity. Note that the sequence from the mammalian urea cycle form has lost the active site Cys, resulting in an ammonia-dependent form, CPSase I (EC 6.3.4.16). CPSases of pyrimidine biosynthesis, arginine biosynthesis, and the urea cycle may be encoded by one or by several genes, depending on the species [Purines, pyrimidines, nucleosides, and nucleotides, Pyrimidine ribonucleotide biosynthesis]. Length = 358 |
| >gnl|CDD|183784 PRK12838, PRK12838, carbamoyl phosphate synthase small subunit; Reviewed | Back alignment and domain information |
|---|
Score = 49.1 bits (118), Expect = 2e-06
Identities = 37/122 (30%), Positives = 53/122 (43%), Gaps = 28/122 (22%)
Query: 56 DNIVISPGPGSPACPEDIGICLRVLLECWD-VPILGVCLGHQALGFVHGADIV-----H- 108
D IV+S GPG P +++ L + + PILG+CLGHQ + GAD H
Sbjct: 210 DGIVLSNGPGDP---KELQPYLPEIKKLISSYPILGICLGHQLIALALGADTEKLPFGHR 266
Query: 109 -APEPVHGRLSEIVHNGDRLFHDIPSGQNSGFKVVRYHSLIIDADSLPKELIPIAWSNSA 167
A PV I R++ + QN H ++D DSL + + + N
Sbjct: 267 GANHPV------IDLTTGRVWM---TSQN--------HGYVVDEDSLDGTPLSVRFFNVN 309
Query: 168 DG 169
DG
Sbjct: 310 DG 311
|
Length = 354 |
| >gnl|CDD|234614 PRK00074, guaA, GMP synthase; Reviewed | Back alignment and domain information |
|---|
Score = 48.5 bits (117), Expect = 4e-06
Identities = 29/104 (27%), Positives = 42/104 (40%), Gaps = 27/104 (25%)
Query: 58 IVISPGP------GSPACPEDIGICLRVLLECWDVPILGVCLGHQALGFVHGADIVHAPE 111
I++S GP G+P +I E VP+LG+C G Q + G + A +
Sbjct: 50 IILSGGPASVYEEGAPRADPEI-------FEL-GVPVLGICYGMQLMAHQLGGKVERAGK 101
Query: 112 PVHGRLSEIVHNGDRLFHDIPSGQN-------------SGFKVV 142
+GR V N LF +P Q+ GFKV+
Sbjct: 102 REYGRAELEVDNDSPLFKGLPEEQDVWMSHGDKVTELPEGFKVI 145
|
Length = 511 |
| >gnl|CDD|214392 CHL00197, carA, carbamoyl-phosphate synthase arginine-specific small subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.9 bits (114), Expect = 5e-06
Identities = 47/227 (20%), Positives = 77/227 (33%), Gaps = 88/227 (38%)
Query: 56 DNIVISPGPGSPACPEDIGICLRVLLECWDVPILGVCLGHQALGFVHGADI--------- 106
D I++S GPG P+ ++ LL+ +++PI G+C+GHQ L A
Sbjct: 235 DGILLSNGPGDPSAIHYGIKTVKKLLK-YNIPIFGICMGHQILSLALEAKTFKLKFGHRG 293
Query: 107 VHAPEPVHGRLSEIVHNGDRLFHDIPSGQNSGFKVVRYHSLIIDADSLPKELIPIAWSNS 166
++ P ++ + EI + QN GF V + +SL K I N
Sbjct: 294 LNHPSGLN-QQVEI------------TSQNHGFAV--------NLESLAKNKFYITHFNL 332
Query: 167 ADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGIMH 226
DG + GI H
Sbjct: 333 NDG--------------------------------------------------TVAGISH 342
Query: 227 STRPHYGVQFHPESIATCYGSKILRNFREITEDYWKRLRSPFVKERN 273
S +P++ VQ+HPE+ + + L F Y+ + +N
Sbjct: 343 SPKPYFSVQYHPEASPGPHDADYL--FE-----YFIEIIKHSKSSKN 382
|
Length = 382 |
| >gnl|CDD|234614 PRK00074, guaA, GMP synthase; Reviewed | Back alignment and domain information |
|---|
Score = 45.0 bits (108), Expect = 5e-05
Identities = 16/31 (51%), Positives = 18/31 (58%)
Query: 223 GIMHSTRPHYGVQFHPESIATCYGSKILRNF 253
I + R YGVQFHPE T G K+L NF
Sbjct: 155 AIANEERKFYGVQFHPEVTHTPQGKKLLENF 185
|
Length = 511 |
| >gnl|CDD|153212 cd01741, GATase1_1, Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain | Back alignment and domain information |
|---|
Score = 43.0 bits (102), Expect = 8e-05
Identities = 26/123 (21%), Positives = 43/123 (34%), Gaps = 18/123 (14%)
Query: 53 NAFDNIVISPGPGSPACPED---------IGICLRVLLECWDVPILGVCLGHQALGFVHG 103
+ +D +VI G P ++ + + L P+LG+CLGHQ L G
Sbjct: 45 DDYDGLVIL---GGPMSVDEDDYPWLKKLKELIRQALAA--GKPVLGICLGHQLLARALG 99
Query: 104 ADIVHAPEPVHGRLSEIVHNGDRLFHDIPSGQNSGFKVVRYHSLIIDA-DSLPKELIPIA 162
+ P+ + + +G F V +H D LP + +A
Sbjct: 100 GKVGRNPKGWEIGWFPVTLTEAGKADPLFAGLPDEFPVFHWHG---DTVVELPPGAVLLA 156
Query: 163 WSN 165
S
Sbjct: 157 SSE 159
|
This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine amidotransferases, or as domains in a much larger multifunctional synthase protein, such as CPSase. Length = 188 |
| >gnl|CDD|183877 PRK13170, hisH, imidazole glycerol phosphate synthase subunit HisH; Provisional | Back alignment and domain information |
|---|
Score = 39.1 bits (92), Expect = 0.002
Identities = 12/25 (48%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
Query: 232 YGVQFHPESIATCYGSKILRNFREI 256
+GVQFHPE G+++L+NF E+
Sbjct: 173 FGVQFHPERSGAA-GAQLLKNFLEM 196
|
Length = 196 |
| >gnl|CDD|237288 PRK13141, hisH, imidazole glycerol phosphate synthase subunit HisH; Provisional | Back alignment and domain information |
|---|
Score = 38.2 bits (90), Expect = 0.003
Identities = 14/28 (50%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Query: 232 YGVQFHPESIATCYGSKILRNFREITED 259
+G QFHPE G KIL+NF E+ E+
Sbjct: 178 FGAQFHPEKSGD-VGLKILKNFVEMVEE 204
|
Length = 205 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 392 | |||
| PLN02889 | 918 | oxo-acid-lyase/anthranilate synthase | 100.0 | |
| KOG1224 | 767 | consensus Para-aminobenzoate (PABA) synthase ABZ1 | 100.0 | |
| COG0512 | 191 | PabA Anthranilate/para-aminobenzoate synthases com | 100.0 | |
| PRK08007 | 187 | para-aminobenzoate synthase component II; Provisio | 100.0 | |
| KOG0026 | 223 | consensus Anthranilate synthase, beta chain [Amino | 100.0 | |
| PRK07649 | 195 | para-aminobenzoate/anthranilate synthase glutamine | 100.0 | |
| PRK06774 | 191 | para-aminobenzoate synthase component II; Provisio | 100.0 | |
| TIGR01823 | 742 | PabB-fungal aminodeoxychorismate synthase, fungal | 100.0 | |
| TIGR00566 | 188 | trpG_papA glutamine amidotransferase of anthranila | 100.0 | |
| CHL00101 | 190 | trpG anthranilate synthase component 2 | 100.0 | |
| PRK08857 | 193 | para-aminobenzoate synthase component II; Provisio | 100.0 | |
| PRK06895 | 190 | putative anthranilate synthase component II; Provi | 100.0 | |
| PLN02335 | 222 | anthranilate synthase | 100.0 | |
| PRK05670 | 189 | anthranilate synthase component II; Provisional | 100.0 | |
| PRK09522 | 531 | bifunctional glutamine amidotransferase/anthranila | 100.0 | |
| PRK05637 | 208 | anthranilate synthase component II; Provisional | 100.0 | |
| PRK07765 | 214 | para-aminobenzoate synthase component II; Provisio | 100.0 | |
| PRK14607 | 534 | bifunctional glutamine amidotransferase/anthranila | 100.0 | |
| cd01743 | 184 | GATase1_Anthranilate_Synthase Type 1 glutamine ami | 100.0 | |
| PRK00758 | 184 | GMP synthase subunit A; Validated | 100.0 | |
| cd01742 | 181 | GATase1_GMP_Synthase Type 1 glutamine amidotransfe | 100.0 | |
| TIGR00888 | 188 | guaA_Nterm GMP synthase (glutamine-hydrolyzing), N | 100.0 | |
| PF00117 | 192 | GATase: Glutamine amidotransferase class-I; InterP | 100.0 | |
| TIGR01815 | 717 | TrpE-clade3 anthranilate synthase, alpha proteobac | 100.0 | |
| PLN02347 | 536 | GMP synthetase | 100.0 | |
| PRK13566 | 720 | anthranilate synthase; Provisional | 100.0 | |
| PRK00074 | 511 | guaA GMP synthase; Reviewed | 100.0 | |
| PRK12564 | 360 | carbamoyl phosphate synthase small subunit; Review | 100.0 | |
| cd01744 | 178 | GATase1_CPSase Small chain of the glutamine-depend | 100.0 | |
| CHL00197 | 382 | carA carbamoyl-phosphate synthase arginine-specifi | 99.98 | |
| TIGR01368 | 358 | CPSaseIIsmall carbamoyl-phosphate synthase, small | 99.97 | |
| PRK12838 | 354 | carbamoyl phosphate synthase small subunit; Review | 99.97 | |
| PRK13170 | 196 | hisH imidazole glycerol phosphate synthase subunit | 99.97 | |
| PLN02771 | 415 | carbamoyl-phosphate synthase (glutamine-hydrolyzin | 99.97 | |
| cd01748 | 198 | GATase1_IGP_Synthase Type 1 glutamine amidotransfe | 99.96 | |
| COG0518 | 198 | GuaA GMP synthase - Glutamine amidotransferase dom | 99.96 | |
| PRK13146 | 209 | hisH imidazole glycerol phosphate synthase subunit | 99.96 | |
| CHL00188 | 210 | hisH imidazole glycerol phosphate synthase subunit | 99.96 | |
| PRK13181 | 199 | hisH imidazole glycerol phosphate synthase subunit | 99.96 | |
| PRK13152 | 201 | hisH imidazole glycerol phosphate synthase subunit | 99.96 | |
| PRK13141 | 205 | hisH imidazole glycerol phosphate synthase subunit | 99.95 | |
| PRK11366 | 254 | puuD gamma-glutamyl-gamma-aminobutyrate hydrolase; | 99.95 | |
| PRK13143 | 200 | hisH imidazole glycerol phosphate synthase subunit | 99.95 | |
| COG0505 | 368 | CarA Carbamoylphosphate synthase small subunit [Am | 99.95 | |
| TIGR01855 | 196 | IMP_synth_hisH imidazole glycerol phosphate syntha | 99.95 | |
| PRK06490 | 239 | glutamine amidotransferase; Provisional | 99.94 | |
| cd01745 | 189 | GATase1_2 Subgroup of proteins having the Type 1 g | 99.94 | |
| PRK14004 | 210 | hisH imidazole glycerol phosphate synthase subunit | 99.94 | |
| cd01741 | 188 | GATase1_1 Subgroup of proteins having the Type 1 g | 99.93 | |
| PRK09065 | 237 | glutamine amidotransferase; Provisional | 99.93 | |
| COG0118 | 204 | HisH Glutamine amidotransferase [Amino acid transp | 99.93 | |
| PRK07567 | 242 | glutamine amidotransferase; Provisional | 99.92 | |
| PRK05665 | 240 | amidotransferase; Provisional | 99.92 | |
| PRK07053 | 234 | glutamine amidotransferase; Provisional | 99.91 | |
| PRK13525 | 189 | glutamine amidotransferase subunit PdxT; Provision | 99.91 | |
| PRK08250 | 235 | glutamine amidotransferase; Provisional | 99.91 | |
| PRK13527 | 200 | glutamine amidotransferase subunit PdxT; Provision | 99.91 | |
| cd01746 | 235 | GATase1_CTP_Synthase Type 1 glutamine amidotransfe | 99.9 | |
| cd01747 | 273 | GATase1_Glutamyl_Hydrolase Type 1 glutamine amidot | 99.9 | |
| KOG1622 | 552 | consensus GMP synthase [Nucleotide transport and m | 99.88 | |
| PRK13142 | 192 | hisH imidazole glycerol phosphate synthase subunit | 99.88 | |
| TIGR01737 | 227 | FGAM_synth_I phosphoribosylformylglycinamidine syn | 99.86 | |
| PLN02617 | 538 | imidazole glycerol phosphate synthase hisHF | 99.86 | |
| PF07722 | 217 | Peptidase_C26: Peptidase C26; InterPro: IPR011697 | 99.84 | |
| COG2071 | 243 | Predicted glutamine amidotransferases [General fun | 99.84 | |
| KOG0370 | 1435 | consensus Multifunctional pyrimidine synthesis pro | 99.84 | |
| PRK05380 | 533 | pyrG CTP synthetase; Validated | 99.83 | |
| TIGR00337 | 525 | PyrG CTP synthase. CTP synthase is involved in pyr | 99.81 | |
| PRK06186 | 229 | hypothetical protein; Validated | 99.78 | |
| TIGR03800 | 184 | PLP_synth_Pdx2 pyridoxal 5'-phosphate synthase, gl | 99.75 | |
| PLN02327 | 557 | CTP synthase | 99.75 | |
| PRK03619 | 219 | phosphoribosylformylglycinamidine synthase I; Prov | 99.74 | |
| KOG3179 | 245 | consensus Predicted glutamine synthetase [Nucleoti | 99.72 | |
| cd01749 | 183 | GATase1_PB Glutamine Amidotransferase (GATase_I) i | 99.71 | |
| PRK05368 | 302 | homoserine O-succinyltransferase; Provisional | 99.65 | |
| COG0504 | 533 | PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide | 99.59 | |
| PLN02832 | 248 | glutamine amidotransferase subunit of pyridoxal 5' | 99.58 | |
| PRK01175 | 261 | phosphoribosylformylglycinamidine synthase I; Prov | 99.5 | |
| COG0047 | 231 | PurL Phosphoribosylformylglycinamidine (FGAM) synt | 99.44 | |
| cd01740 | 238 | GATase1_FGAR_AT Type 1 glutamine amidotransferase | 99.44 | |
| KOG0623 | 541 | consensus Glutamine amidotransferase/cyclase [Amin | 99.35 | |
| PRK13526 | 179 | glutamine amidotransferase subunit PdxT; Provision | 99.31 | |
| KOG2387 | 585 | consensus CTP synthase (UTP-ammonia lyase) [Nucleo | 99.22 | |
| KOG1559 | 340 | consensus Gamma-glutamyl hydrolase [Coenzyme trans | 99.09 | |
| PF13507 | 259 | GATase_5: CobB/CobQ-like glutamine amidotransferas | 98.86 | |
| TIGR01857 | 1239 | FGAM-synthase phosphoribosylformylglycinamidine sy | 98.86 | |
| cd03131 | 175 | GATase1_HTS Type 1 glutamine amidotransferase (GAT | 98.69 | |
| COG0311 | 194 | PDX2 Predicted glutamine amidotransferase involved | 98.69 | |
| PLN03206 | 1307 | phosphoribosylformylglycinamidine synthase; Provis | 98.6 | |
| PF01174 | 188 | SNO: SNO glutamine amidotransferase family; InterP | 98.54 | |
| TIGR01735 | 1310 | FGAM_synt phosphoribosylformylglycinamidine syntha | 98.5 | |
| PRK05297 | 1290 | phosphoribosylformylglycinamidine synthase; Provis | 98.45 | |
| PF04204 | 298 | HTS: Homoserine O-succinyltransferase ; InterPro: | 98.39 | |
| cd01750 | 194 | GATase1_CobQ Type 1 glutamine amidotransferase (GA | 98.2 | |
| PHA03366 | 1304 | FGAM-synthase; Provisional | 98.13 | |
| TIGR01001 | 300 | metA homoserine O-succinyltransferase. The apparen | 98.03 | |
| PRK06278 | 476 | cobyrinic acid a,c-diamide synthase; Validated | 97.81 | |
| cd03130 | 198 | GATase1_CobB Type 1 glutamine amidotransferase (GA | 97.76 | |
| TIGR01739 | 1202 | tegu_FGAM_synt herpesvirus tegument protein/v-FGAM | 97.67 | |
| cd01653 | 115 | GATase1 Type 1 glutamine amidotransferase (GATase1 | 97.67 | |
| cd03128 | 92 | GAT_1 Type 1 glutamine amidotransferase (GATase1)- | 97.58 | |
| PRK00784 | 488 | cobyric acid synthase; Provisional | 97.24 | |
| cd03146 | 212 | GAT1_Peptidase_E Type 1 glutamine amidotransferase | 97.1 | |
| KOG3210 | 226 | consensus Imidazoleglycerol-phosphate synthase sub | 96.99 | |
| COG1492 | 486 | CobQ Cobyric acid synthase [Coenzyme metabolism] | 96.98 | |
| PRK11780 | 217 | isoprenoid biosynthesis protein with amidotransfer | 96.79 | |
| PRK01077 | 451 | cobyrinic acid a,c-diamide synthase; Validated | 96.78 | |
| cd03169 | 180 | GATase1_PfpI_1 Type 1 glutamine amidotransferase ( | 96.75 | |
| TIGR01382 | 166 | PfpI intracellular protease, PfpI family. The memb | 96.55 | |
| cd03133 | 213 | GATase1_ES1 Type 1 glutamine amidotransferase (GAT | 96.53 | |
| TIGR00379 | 449 | cobB cobyrinic acid a,c-diamide synthase. This mod | 96.27 | |
| cd03134 | 165 | GATase1_PfpI_like A type 1 glutamine amidotransfer | 96.16 | |
| COG1897 | 307 | MetA Homoserine trans-succinylase [Amino acid tran | 96.12 | |
| cd03147 | 231 | GATase1_Ydr533c_like Type 1 glutamine amidotransfe | 96.1 | |
| TIGR00313 | 475 | cobQ cobyric acid synthase CobQ. | 95.98 | |
| PF07685 | 158 | GATase_3: CobB/CobQ-like glutamine amidotransferas | 95.96 | |
| cd03144 | 114 | GATase1_ScBLP_like Type 1 glutamine amidotransfera | 95.68 | |
| cd03132 | 142 | GATase1_catalase Type 1 glutamine amidotransferase | 95.23 | |
| cd03135 | 163 | GATase1_DJ-1 Type 1 glutamine amidotransferase (GA | 95.19 | |
| PRK11574 | 196 | oxidative-stress-resistance chaperone; Provisional | 95.1 | |
| KOG1907 | 1320 | consensus Phosphoribosylformylglycinamidine syntha | 95.1 | |
| PRK04155 | 287 | chaperone protein HchA; Provisional | 94.93 | |
| PF01965 | 147 | DJ-1_PfpI: DJ-1/PfpI family; InterPro: IPR002818 T | 94.76 | |
| PRK13896 | 433 | cobyrinic acid a,c-diamide synthase; Provisional | 94.7 | |
| cd03148 | 232 | GATase1_EcHsp31_like Type 1 glutamine amidotransfe | 94.63 | |
| COG0693 | 188 | ThiJ Putative intracellular protease/amidase [Gene | 94.17 | |
| cd03141 | 221 | GATase1_Hsp31_like Type 1 glutamine amidotransfera | 93.57 | |
| PRK05282 | 233 | (alpha)-aspartyl dipeptidase; Validated | 93.38 | |
| cd03140 | 170 | GATase1_PfpI_3 Type 1 glutamine amidotransferase ( | 92.68 | |
| cd03138 | 195 | GATase1_AraC_2 AraC transcriptional regulators hav | 92.65 | |
| TIGR01383 | 179 | not_thiJ DJ-1 family protein. This model represent | 92.39 | |
| cd03129 | 210 | GAT1_Peptidase_E_like Type 1 glutamine amidotransf | 91.65 | |
| cd03137 | 187 | GATase1_AraC_1 AraC transcriptional regulators hav | 90.86 | |
| PRK11104 | 177 | hemG protoporphyrinogen oxidase; Provisional | 89.66 | |
| COG3442 | 250 | Predicted glutamine amidotransferase [General func | 87.72 | |
| cd03136 | 185 | GATase1_AraC_ArgR_like AraC transcriptional regula | 87.52 | |
| cd03139 | 183 | GATase1_PfpI_2 Type 1 glutamine amidotransferase ( | 87.17 | |
| PRK11249 | 752 | katE hydroperoxidase II; Provisional | 86.54 | |
| PF13278 | 166 | DUF4066: Putative amidotransferase; PDB: 3BHN_A 3M | 86.33 | |
| PF06283 | 217 | ThuA: Trehalose utilisation; PDB: 4E5V_A 1T0B_A. | 83.57 | |
| PF03358 | 152 | FMN_red: NADPH-dependent FMN reductase; InterPro: | 82.99 | |
| COG4090 | 154 | Uncharacterized protein conserved in archaea [Func | 82.94 | |
| PF09825 | 367 | BPL_N: Biotin-protein ligase, N terminal; InterPro | 82.67 | |
| PF06490 | 109 | FleQ: Flagellar regulatory protein FleQ; InterPro: | 82.27 | |
| PRK01911 | 292 | ppnK inorganic polyphosphate/ATP-NAD kinase; Provi | 81.9 | |
| COG4126 | 230 | Hydantoin racemase [Amino acid transport and metab | 81.5 |
| >PLN02889 oxo-acid-lyase/anthranilate synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-69 Score=587.17 Aligned_cols=375 Identities=67% Similarity=1.092 Sum_probs=298.6
Q ss_pred CCccEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHH
Q 046651 2 LEFVRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLL 81 (392)
Q Consensus 2 ~~~~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~ 81 (392)
+++||||||||||||||||+|+|++++|.+|+||+||+.+|+++..++++...||+||||||||+|.+++|++++.++|.
T Consensus 79 ~~~~~iLlIDnyDSfTyNL~~~L~~~~g~~~~Vv~nd~~~~~~~~~~~~~~~~~d~IVlSPGPG~P~~~~d~Gi~~~~i~ 158 (918)
T PLN02889 79 LEFVRTLLIDNYDSYTYNIYQELSIVNGVPPVVVRNDEWTWEEVYHYLYEEKAFDNIVISPGPGSPTCPADIGICLRLLL 158 (918)
T ss_pred cccceEEEEeCCCchHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHhhhhcccCCCEEEECCCCCCccchHHHHHHHHHHH
Confidence 46799999999999999999999998899999999999999998865445578999999999999999999999999998
Q ss_pred HcCCCCEEEEcHHHHHHHHHhCCeeeecCCCceeceeEEEecCCcccccCCCCCCcceEEEeeecceeecCCCCCCcEEE
Q 046651 82 ECWDVPILGVCLGHQALGFVHGADIVHAPEPVHGRLSEIVHNGDRLFHDIPSGQNSGFKVVRYHSLIIDADSLPKELIPI 161 (392)
Q Consensus 82 ~~~~iPILGVCLGhQ~La~a~Gg~V~~apep~hG~~s~i~h~g~~LF~~ips~~~s~f~VvryHSl~V~~~sLP~~l~~i 161 (392)
+..++||||||||||+|++++||+|.++++++||+.+.|.|+++.||+++|++.++.|+|+||||++|+..+||++|+++
T Consensus 159 ~~~~iPILGICLGhQ~i~~~~Gg~V~~~~~~~HG~~s~I~h~~~~lF~glp~~~~~~f~v~RYHSL~v~~~~lP~~L~~~ 238 (918)
T PLN02889 159 ECRDIPILGVCLGHQALGYVHGARIVHAPEPVHGRLSEIEHNGCRLFDDIPSGRNSGFKVVRYHSLVIDAESLPKELVPI 238 (918)
T ss_pred HhCCCcEEEEcHHHHHHHHhcCceEEeCCCceeeeeeeEeecCchhhcCCCcCCCCCceEEeCCCcccccCCCCCceEEE
Confidence 86689999999999999999999999999999999999999999999999985444599999999999877799999999
Q ss_pred EEecCCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCcccccc-cccCCcceEEEEEecCCCEEEEeccCCC
Q 046651 162 AWSNSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIY-SNRMRREVLMGIMHSTRPHYGVQFHPES 240 (392)
Q Consensus 162 Awt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~vmgi~h~~~P~~GVQFHPEs 240 (392)
||+.+.++++|+++.+++..+.+.+.+.+.+.+.+|+++...+|..+.++| ...++..+||||+|+++|+|||||||||
T Consensus 239 A~t~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viMairH~~~P~~GVQfHPES 318 (918)
T PLN02889 239 AWTSSSDTLSFLESQKSGLVPDAYESQIGQSGSSDPFSSKLKNGTSWPSSHSERMQNGKILMGIMHSTRPHYGLQFHPES 318 (918)
T ss_pred EEECCCcccccccccccccccccccccccccccccccccccccccccccccccccCCCCeeEEEEECCCceEEEEeCCcc
Confidence 999988899999999999888888888888999999999999999999999 5566667999999999999999999999
Q ss_pred CCCchhHHHHHHHHHHHHHhhhhcCCCcccccccccc--cch---hhhhHhhhhcccccCCCcccccccccccccccccC
Q 046651 241 IATCYGSKILRNFREITEDYWKRLRSPFVKERNVHYT--GAE---SLLLREITRTSRSVNNSDELGREALRPRQLFCDLG 315 (392)
Q Consensus 241 iat~~G~~I~~NF~~l~~~~~~~~~~~~~~~~~~~~~--~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 315 (392)
++|++|.+||+||++++.+||+..+....++++...+ .+. ..++... +....+|+.+.+ ..++.++...
T Consensus 319 i~t~~G~~l~~nF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-----~~~~~~~~~~ 392 (918)
T PLN02889 319 IATCYGRQIFKNFREITQDYWLRLRSTSLRRRNSNLTANMQVPDASQLFKVP-RRGQLGNGEDAL-----GNRELSRRAQ 392 (918)
T ss_pred ccCchhHHHHHHHHHHHHHHhhccCCCccccccccccccccccccccccccc-cccccccccccc-----cccccccccc
Confidence 9999999999999999999987655432232221100 000 0000000 000011111111 0111111111
Q ss_pred CCcccccccccccccccCCCceeeEEEEEEecccccccCChHHHHHHHhCCCCCCCeEEccCCCCCCC
Q 046651 316 DRRFGIQHSRRFEIQRSSIGVKCLKLTWRKFDHLASTVGGARNIFCELFGNNKAENTFWLDSSSTEKV 383 (392)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~f~~lf~~~~~~~~fWLDss~~~~~ 383 (392)
....+. -..+...+.++...+.+++.|++|+..+.++|++++|||+||+..+++++|||||+..+.+
T Consensus 393 ~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~if~~lf~~~~~~~~flLdSs~~~~~ 459 (918)
T PLN02889 393 LRGSVD-VFSLLNLSEPSSGVKFLKLKWRKFNKLAAQVGGARNIFCELFGKNKAENTFWLDSSSTEKK 459 (918)
T ss_pred cccccc-cccccccCCCCcccceeecceeecccccccccCHHHHHHHHHhccCCCCeEEEeCCCCCCC
Confidence 000000 0111223333335677999999999999999999999999999876789999999987543
|
|
| >KOG1224 consensus Para-aminobenzoate (PABA) synthase ABZ1 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-62 Score=497.92 Aligned_cols=307 Identities=55% Similarity=0.964 Sum_probs=263.8
Q ss_pred CccEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHH
Q 046651 3 EFVRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLE 82 (392)
Q Consensus 3 ~~~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~ 82 (392)
.++|||+|||||||||||||+|+.++|+++|++.+++|+|+|..++++++..||+||++||||+|.|++|+|||.+++++
T Consensus 13 ~rl~~LlID~YDSyTfNiy~ll~~~~~vp~V~~vh~~~~~~d~~~~l~q~~~FDaIVVgPGPG~P~~a~d~gI~~rl~~~ 92 (767)
T KOG1224|consen 13 PRLRTLLIDNYDSYTFNIYQLLSTINGVPPVVIVHDEWTWEDAYHYLYQDVAFDAIVVGPGPGSPMCAADIGICLRLLLE 92 (767)
T ss_pred hheeEEEEecccchhhhHHHHHHHhcCCCcEEEEeccccCHHHHHHHhhccccceEEecCCCCCCCcHHHHHHHHHHHHh
Confidence 35799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCEEEEcHHHHHHHHHhCCeeeecCCCceeceeEEEecCCcccccCCCCCCcceEEEeeecceeecCCCCCCcEEEE
Q 046651 83 CWDVPILGVCLGHQALGFVHGADIVHAPEPVHGRLSEIVHNGDRLFHDIPSGQNSGFKVVRYHSLIIDADSLPKELIPIA 162 (392)
Q Consensus 83 ~~~iPILGVCLGhQ~La~a~Gg~V~~apep~hG~~s~i~h~g~~LF~~ips~~~s~f~VvryHSl~V~~~sLP~~l~~iA 162 (392)
|++|||||||||||+||.+|||.|+++++|.||+++.++|++.-+|.+||+++++.||++||||+.|++ +|.++.+++
T Consensus 93 ~~~iPilGICLGfQal~l~hGA~v~~~n~p~HGrvs~i~~~~~~~f~gi~sg~~~~fK~~RYHSL~in~--~pid~l~il 170 (767)
T KOG1224|consen 93 CRDIPILGICLGFQALGLVHGAHVVHANEPVHGRVSGIEHDGNILFSGIPSGRNSDFKVVRYHSLIINS--LPIDLLPIL 170 (767)
T ss_pred cCCCceeeeehhhHhHhhhcccceecCCCcccceeeeEEecCcEEEccCCCCCcccceeEEeEEEEecC--Cchhhhcce
Confidence 999999999999999999999999999999999999999999999999999999999999999999997 999999999
Q ss_pred EecCCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCcccccccccCCcceEEEEEecCCCEEEEeccCCCCC
Q 046651 163 WSNSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGIMHSTRPHYGVQFHPESIA 242 (392)
Q Consensus 163 wt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vmgi~h~~~P~~GVQFHPEsia 242 (392)
|+.+. +++.++|+|+|++.||||+||||||++
T Consensus 171 ~t~~d------------------------------------------------dng~ilMsi~~~~fPhfG~qyHPES~~ 202 (767)
T KOG1224|consen 171 WTIYD------------------------------------------------DNGHILMSIMHSSFPHFGLQYHPESIA 202 (767)
T ss_pred eEeec------------------------------------------------CCceEEEEeeccCCCccceeeChHHhh
Confidence 98762 223499999999999999999999999
Q ss_pred CchhHHHHHHHHHHHHHhhhhcCCCcccccccccccchhhhhHhhhhcccccCCCcccccccccccccccccCCCccccc
Q 046651 243 TCYGSKILRNFREITEDYWKRLRSPFVKERNVHYTGAESLLLREITRTSRSVNNSDELGREALRPRQLFCDLGDRRFGIQ 322 (392)
Q Consensus 243 t~~G~~I~~NF~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 322 (392)
+++|.+||+||++++-.+|.++.+...++|+-.. |+-|.++-- ..++.+..++
T Consensus 203 s~~g~~lfkNFl~lt~~~n~~c~~~~~k~~Ng~f--------------------s~nl~r~D~------~~~~~~i~~v- 255 (767)
T KOG1224|consen 203 STYGSQLFKNFLDLTVNYNSRCKSTSLKRRNGNF--------------------SANLQRPDA------FSAKTNIVDV- 255 (767)
T ss_pred hhhhHHHHHHHHHhhccCcccccchhhhhccCcc--------------------hhhhcCccc------cccccCCcch-
Confidence 9999999999999999999998888666666542 222222110 0011111122
Q ss_pred ccccccccccCCCceeeEEEEEEecccccccCChHHHHHHHhCCCCCCCeEEccCCCCCC--Ccccc
Q 046651 323 HSRRFEIQRSSIGVKCLKLTWRKFDHLASTVGGARNIFCELFGNNKAENTFWLDSSSTEK--VGFLH 387 (392)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~f~~lf~~~~~~~~fWLDss~~~~--~~~~~ 387 (392)
+.+..-..++...+.+++.|.+--+++.-+|.-+++|..+|+.+...++||++-++.++ |-|.|
T Consensus 256 -~~~~~sg~p~~~~k~~e~~w~~~l~la~c~~i~~~~f~~~f~~~~~n~g~wsi~~~~~~a~~rf~h 321 (767)
T KOG1224|consen 256 -FDMVDSGYPKPHTKLLELKWKKHLRLAHCVGIVRNIFMELFGKNRGNDGFWSITSSSDKARGRFSH 321 (767)
T ss_pred -HhhccCCCCCcceeEEEeccCCcchhhhhhhhhcccceeeeecccCCCceEEEEecCCCcceeEEE
Confidence 22233334455668899999999999988999999999999999888999999777654 33444
|
|
| >COG0512 PabA Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-59 Score=427.51 Aligned_cols=188 Identities=50% Similarity=0.811 Sum_probs=177.3
Q ss_pred cEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHHc-
Q 046651 5 VRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLEC- 83 (392)
Q Consensus 5 ~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~~- 83 (392)
||+|||||||||||||+|+|++ +|.+++|++||+.+.+++.. ..+|.||||||||+|. |.|++.++|++.
T Consensus 2 ~~IL~IDNyDSFtyNLv~yl~~-lg~~v~V~rnd~~~~~~~~~-----~~pd~iviSPGPG~P~---d~G~~~~~i~~~~ 72 (191)
T COG0512 2 MMILLIDNYDSFTYNLVQYLRE-LGAEVTVVRNDDISLELIEA-----LKPDAIVISPGPGTPK---DAGISLELIRRFA 72 (191)
T ss_pred ceEEEEECccchHHHHHHHHHH-cCCceEEEECCccCHHHHhh-----cCCCEEEEcCCCCChH---HcchHHHHHHHhc
Confidence 7899999999999999999998 78999999999777776655 6799999999999997 899999999984
Q ss_pred CCCCEEEEcHHHHHHHHHhCCeeeecCCCceeceeEEEecCCcccccCCCCCCcceEEEeeecceeecCCCCCCcEEEEE
Q 046651 84 WDVPILGVCLGHQALGFVHGADIVHAPEPVHGRLSEIVHNGDRLFHDIPSGQNSGFKVVRYHSLIIDADSLPKELIPIAW 163 (392)
Q Consensus 84 ~~iPILGVCLGhQ~La~a~Gg~V~~apep~hG~~s~i~h~g~~LF~~ips~~~s~f~VvryHSl~V~~~sLP~~l~~iAw 163 (392)
+++||||||||||+|++++||+|.++++++||+.|.+.|+++.+|+++|+. |+|.||||++++++++|++++++||
T Consensus 73 ~~~PiLGVCLGHQai~~~fGg~V~~a~~~~HGK~s~i~h~g~~iF~glp~~----f~v~RYHSLvv~~~~lP~~l~vtA~ 148 (191)
T COG0512 73 GRIPILGVCLGHQAIAEAFGGKVVRAKEPMHGKTSIITHDGSGLFAGLPNP----FTVTRYHSLVVDPETLPEELEVTAE 148 (191)
T ss_pred CCCCEEEECccHHHHHHHhCCEEEecCCCcCCeeeeeecCCcccccCCCCC----CEEEeeEEEEecCCCCCCceEEEEE
Confidence 579999999999999999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred ecCCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCcccccccccCCcceEEEEEecCCCEEEEeccCCCCCC
Q 046651 164 SNSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGIMHSTRPHYGVQFHPESIAT 243 (392)
Q Consensus 164 t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vmgi~h~~~P~~GVQFHPEsiat 243 (392)
+++. + +|||++|++.|+|||||||||+.|
T Consensus 149 ~~d~-------------~--------------------------------------~IMai~h~~~pi~gvQFHPESilT 177 (191)
T COG0512 149 SEDG-------------G--------------------------------------VIMAVRHKKLPIYGVQFHPESILT 177 (191)
T ss_pred eCCC-------------C--------------------------------------EEEEEeeCCCCEEEEecCCccccc
Confidence 9771 3 899999999999999999999999
Q ss_pred chhHHHHHHHHHH
Q 046651 244 CYGSKILRNFREI 256 (392)
Q Consensus 244 ~~G~~I~~NF~~l 256 (392)
++|.+|++||+++
T Consensus 178 ~~G~~il~Nfl~~ 190 (191)
T COG0512 178 EYGHRILENFLRL 190 (191)
T ss_pred cchHHHHHHHHhh
Confidence 9999999999976
|
|
| >PRK08007 para-aminobenzoate synthase component II; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-48 Score=355.17 Aligned_cols=185 Identities=45% Similarity=0.721 Sum_probs=167.3
Q ss_pred EEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHH-cC
Q 046651 6 RTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLE-CW 84 (392)
Q Consensus 6 r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~-~~ 84 (392)
|+|||||||||||||+++|++ .|.++.|+++|+.+++++.. ..+|+||||||||+|.+.. ...++++. ..
T Consensus 1 ~il~idn~Dsft~nl~~~l~~-~g~~v~v~~~~~~~~~~~~~-----~~~d~iils~GPg~p~~~~---~~~~~~~~~~~ 71 (187)
T PRK08007 1 MILLIDNYDSFTWNLYQYFCE-LGADVLVKRNDALTLADIDA-----LKPQKIVISPGPCTPDEAG---ISLDVIRHYAG 71 (187)
T ss_pred CEEEEECCCccHHHHHHHHHH-CCCcEEEEeCCCCCHHHHHh-----cCCCEEEEcCCCCChHHCC---ccHHHHHHhcC
Confidence 499999999999999999998 79999999999887888765 5799999999999997543 33444544 35
Q ss_pred CCCEEEEcHHHHHHHHHhCCeeeecCCCceeceeEEEecCCcccccCCCCCCcceEEEeeecceeecCCCCCCcEEEEEe
Q 046651 85 DVPILGVCLGHQALGFVHGADIVHAPEPVHGRLSEIVHNGDRLFHDIPSGQNSGFKVVRYHSLIIDADSLPKELIPIAWS 164 (392)
Q Consensus 85 ~iPILGVCLGhQ~La~a~Gg~V~~apep~hG~~s~i~h~g~~LF~~ips~~~s~f~VvryHSl~V~~~sLP~~l~~iAwt 164 (392)
++||||||+|||+|+.++||+|.+.+.+.||..+.+.+.++.+|+++|.. +.|.+||++.|+..++|++++++|++
T Consensus 72 ~~PiLGIClG~Q~la~a~Gg~v~~~~~~~~g~~~~v~~~~~~l~~~~~~~----~~v~~~H~~~v~~~~lp~~~~v~a~~ 147 (187)
T PRK08007 72 RLPILGVCLGHQAMAQAFGGKVVRAAKVMHGKTSPITHNGEGVFRGLANP----LTVTRYHSLVVEPDSLPACFEVTAWS 147 (187)
T ss_pred CCCEEEECHHHHHHHHHcCCEEEeCCCcccCCceEEEECCCCcccCCCCC----cEEEEcchhEEccCCCCCCeEEEEEe
Confidence 89999999999999999999999999999999999989888999999877 99999999999866699999999999
Q ss_pred cCCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCcccccccccCCcceEEEEEecCCCEEEEeccCCCCCCc
Q 046651 165 NSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGIMHSTRPHYGVQFHPESIATC 244 (392)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vmgi~h~~~P~~GVQFHPEsiat~ 244 (392)
++ + .+||++|.+.|+||||||||++.|.
T Consensus 148 ~~--------------~--------------------------------------~i~a~~~~~~~i~GvQfHPE~~~t~ 175 (187)
T PRK08007 148 ET--------------R--------------------------------------EIMGIRHRQWDLEGVQFHPESILSE 175 (187)
T ss_pred CC--------------C--------------------------------------cEEEEEeCCCCEEEEEeCCcccCCc
Confidence 87 7 8999999999999999999999999
Q ss_pred hhHHHHHHHHH
Q 046651 245 YGSKILRNFRE 255 (392)
Q Consensus 245 ~G~~I~~NF~~ 255 (392)
+|.+||+||++
T Consensus 176 ~G~~il~nFl~ 186 (187)
T PRK08007 176 QGHQLLANFLH 186 (187)
T ss_pred chHHHHHHHhh
Confidence 99999999985
|
|
| >KOG0026 consensus Anthranilate synthase, beta chain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-47 Score=342.47 Aligned_cols=193 Identities=44% Similarity=0.721 Sum_probs=180.9
Q ss_pred EEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHH-cC
Q 046651 6 RTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLE-CW 84 (392)
Q Consensus 6 r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~-~~ 84 (392)
-+++||||||||||++|+|.--.|.++.|.|||+.|.+|+.. ..+++++||||||+|. |-|||++.+++ ..
T Consensus 20 piv~IDNYDSFT~Nv~qYL~~e~g~~~~VyRNDeiTV~El~~-----~NP~~LliSPGPG~P~---DsGIs~~~i~~f~~ 91 (223)
T KOG0026|consen 20 PIIVIDNYDSFTYNLCQYLMGELGCHFEVYRNDELTVEELKR-----KNPRGLLISPGPGTPQ---DSGISLQTVLELGP 91 (223)
T ss_pred CEEEEecccchhHHHHHHhhhccCccEEEEecCcccHHHHhh-----cCCCeEEecCCCCCCc---cccchHHHHHHhCC
Confidence 388999999999999999954489999999999999999987 7899999999999997 88999998888 57
Q ss_pred CCCEEEEcHHHHHHHHHhCCeeeecC-CCceeceeEEEecC---CcccccCCCCCCcceEEEeeecceeecCCCC-CCcE
Q 046651 85 DVPILGVCLGHQALGFVHGADIVHAP-EPVHGRLSEIVHNG---DRLFHDIPSGQNSGFKVVRYHSLIIDADSLP-KELI 159 (392)
Q Consensus 85 ~iPILGVCLGhQ~La~a~Gg~V~~ap-ep~hG~~s~i~h~g---~~LF~~ips~~~s~f~VvryHSl~V~~~sLP-~~l~ 159 (392)
.||++|||+|.|.|..++||+|..++ +-+||..|.|.|++ +.+|+++|++ |.|.||||++++.+||| ++|.
T Consensus 92 ~iP~fGvCMGlQCi~e~fGGkv~~a~~~i~HGK~S~i~~D~~~~~G~f~g~~q~----~~V~RYHSLa~~~sSlP~d~L~ 167 (223)
T KOG0026|consen 92 LVPLFGVCMGLQCIGEAFGGKIVRSPFGVMHGKSSMVHYDEKGEEGLFSGLSNP----FIVGRYHSLVIEKDSFPSDELE 167 (223)
T ss_pred CCceeeeehhhhhhhhhhCcEEeccCcceeeccccccccCCccccccccCCCCC----eEEEeeeeeeeecccCCcccee
Confidence 99999999999999999999999999 88999999999988 8999999999 99999999999999999 8999
Q ss_pred EEEEecCCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCcccccccccCCcceEEEEEecCCCE-EEEeccC
Q 046651 160 PIAWSNSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGIMHSTRPH-YGVQFHP 238 (392)
Q Consensus 160 ~iAwt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vmgi~h~~~P~-~GVQFHP 238 (392)
++|||++ + +|||.+|+++.| -||||||
T Consensus 168 VTawTEn--------------G--------------------------------------~iMgaRHkKY~~ieGVQfHP 195 (223)
T KOG0026|consen 168 VTAWTED--------------G--------------------------------------LVMAARHRKYKHIQGVQFHP 195 (223)
T ss_pred eeEeccC--------------c--------------------------------------EEEeeeccccccccceeecc
Confidence 9999999 7 999999999984 5999999
Q ss_pred CCCCCchhHHHHHHHHHHHHHhhh
Q 046651 239 ESIATCYGSKILRNFREITEDYWK 262 (392)
Q Consensus 239 Esiat~~G~~I~~NF~~l~~~~~~ 262 (392)
||+.|++|+.+++||++++..-|.
T Consensus 196 ESIlteeGk~~irNflni~~~tWe 219 (223)
T KOG0026|consen 196 ESIITTEGKTIVRNFIKIVEKKWS 219 (223)
T ss_pred hhhhhhhhHHHHHHHHHhcccchh
Confidence 999999999999999999986664
|
|
| >PRK07649 para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-45 Score=339.34 Aligned_cols=188 Identities=44% Similarity=0.689 Sum_probs=167.7
Q ss_pred EEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHH-cC
Q 046651 6 RTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLE-CW 84 (392)
Q Consensus 6 r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~-~~ 84 (392)
|+|||||||||||||.+.|++ .|.++.|+++++.+++++.. ..||+||||||||+|..... ...+++. ..
T Consensus 1 ~il~idn~dsft~nl~~~l~~-~g~~v~v~~~~~~~~~~~~~-----~~~d~iIlsgGP~~p~~~~~---~~~~i~~~~~ 71 (195)
T PRK07649 1 MILMIDNYDSFTFNLVQFLGE-LGQELVVKRNDEVTISDIEN-----MKPDFLMISPGPCSPNEAGI---SMEVIRYFAG 71 (195)
T ss_pred CEEEEeCCCccHHHHHHHHHH-CCCcEEEEeCCCCCHHHHhh-----CCCCEEEECCCCCChHhCCC---chHHHHHhcC
Confidence 489999999999999999999 69999999999877777655 67999999999999975432 3333433 35
Q ss_pred CCCEEEEcHHHHHHHHHhCCeeeecCCCceeceeEEEecCCcccccCCCCCCcceEEEeeecceeecCCCCCCcEEEEEe
Q 046651 85 DVPILGVCLGHQALGFVHGADIVHAPEPVHGRLSEIVHNGDRLFHDIPSGQNSGFKVVRYHSLIIDADSLPKELIPIAWS 164 (392)
Q Consensus 85 ~iPILGVCLGhQ~La~a~Gg~V~~apep~hG~~s~i~h~g~~LF~~ips~~~s~f~VvryHSl~V~~~sLP~~l~~iAwt 164 (392)
++||||||+|||+|+.++||+|.+.+.+.||....+.+++++||.++|.. |.+.+||++.|....+|++++++|++
T Consensus 72 ~~PvLGIClG~Qlla~~lGg~V~~~~~~~~G~~~~i~~~~~~lf~~~~~~----~~v~~~H~~~v~~~~lp~~~~~~a~s 147 (195)
T PRK07649 72 KIPIFGVCLGHQSIAQVFGGEVVRAERLMHGKTSLMHHDGKTIFSDIPNP----FTATRYHSLIVKKETLPDCLEVTSWT 147 (195)
T ss_pred CCCEEEEcHHHHHHHHHcCCEEeeCCCcccCCeEEEEECCChhhcCCCCC----CEEEEechheEecccCCCCeEEEEEc
Confidence 89999999999999999999999999999999888888888999999988 99999999999755699999999999
Q ss_pred cCCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCcccccccccCCcceEEEEEecCCCEEEEeccCCCCCCc
Q 046651 165 NSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGIMHSTRPHYGVQFHPESIATC 244 (392)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vmgi~h~~~P~~GVQFHPEsiat~ 244 (392)
++ + .+||++|.++|+||||||||++.|+
T Consensus 148 ~~--------------~--------------------------------------~v~a~~~~~~~i~gvQFHPE~~~t~ 175 (195)
T PRK07649 148 EE--------------G--------------------------------------EIMAIRHKTLPIEGVQFHPESIMTS 175 (195)
T ss_pred CC--------------C--------------------------------------cEEEEEECCCCEEEEEECCCCCCCc
Confidence 77 6 7999999999999999999999999
Q ss_pred hhHHHHHHHHHHHH
Q 046651 245 YGSKILRNFREITE 258 (392)
Q Consensus 245 ~G~~I~~NF~~l~~ 258 (392)
+|.+||+||+++..
T Consensus 176 ~g~~il~nfl~~~~ 189 (195)
T PRK07649 176 HGKELLQNFIRKYS 189 (195)
T ss_pred cHHHHHHHHHHHhH
Confidence 99999999998764
|
|
| >PRK06774 para-aminobenzoate synthase component II; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-45 Score=333.65 Aligned_cols=189 Identities=47% Similarity=0.723 Sum_probs=164.5
Q ss_pred EEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHH-cC
Q 046651 6 RTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLE-CW 84 (392)
Q Consensus 6 r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~-~~ 84 (392)
|+|||||||||||||+++|++ .|.++.|+++++.+++++.. .++|+||||||||+|..... ...+++. ..
T Consensus 1 ~il~id~~dsf~~nl~~~l~~-~~~~~~v~~~~~~~~~~~~~-----~~~~~iilsgGP~~~~~~~~---~~~~i~~~~~ 71 (191)
T PRK06774 1 MLLLIDNYDSFTYNLYQYFCE-LGTEVMVKRNDELQLTDIEQ-----LAPSHLVISPGPCTPNEAGI---SLAVIRHFAD 71 (191)
T ss_pred CEEEEECCCchHHHHHHHHHH-CCCcEEEEeCCCCCHHHHHh-----cCCCeEEEcCCCCChHhCCC---chHHHHHhcC
Confidence 389999999999999999998 79999999999877888765 57999999999999975432 3344443 35
Q ss_pred CCCEEEEcHHHHHHHHHhCCeeeecCCCceeceeEEEecCCcccccCCCCCCcceEEEeeecceeecCCCCCCcEEEEEe
Q 046651 85 DVPILGVCLGHQALGFVHGADIVHAPEPVHGRLSEIVHNGDRLFHDIPSGQNSGFKVVRYHSLIIDADSLPKELIPIAWS 164 (392)
Q Consensus 85 ~iPILGVCLGhQ~La~a~Gg~V~~apep~hG~~s~i~h~g~~LF~~ips~~~s~f~VvryHSl~V~~~sLP~~l~~iAwt 164 (392)
++||||||+|||+|+.++||+|.+.++..||+...+.+..++||+++|.. ++|.+||++.|+...||++++++|++
T Consensus 72 ~~PiLGIC~G~Qlla~~~GG~v~~~~~~~~G~~~~~~~~~~~lf~~l~~~----~~v~~~Hs~~v~~~~lp~~~~vlA~s 147 (191)
T PRK06774 72 KLPILGVCLGHQALGQAFGARVVRARQVMHGKTSAICHSGQGVFRGLNQP----LTVTRYHSLVIAADSLPGCFELTAWS 147 (191)
T ss_pred CCCEEEECHHHHHHHHHhCCEEEeCCcceecceEEEEecCchhhcCCCCC----cEEEEeCcceeeccCCCCCeEEEEEe
Confidence 89999999999999999999999999889999888888888999999877 89999999999755599999999998
Q ss_pred cCCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCcccccccccCCcceEEEEEecCCCEEEEeccCCCCCCc
Q 046651 165 NSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGIMHSTRPHYGVQFHPESIATC 244 (392)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vmgi~h~~~P~~GVQFHPEsiat~ 244 (392)
+.. + .-..+|+++|.+.|+||||||||+++|.
T Consensus 148 ~~d-------------~-----------------------------------~~~~i~~~~~~~~~i~GvQfHPE~~~~~ 179 (191)
T PRK06774 148 ERG-------------G-----------------------------------EMDEIMGIRHRTLPLEGVQFHPESILSE 179 (191)
T ss_pred CCC-------------C-----------------------------------CcceEEEEEeCCCCEEEEEECCCcCCCc
Confidence 751 1 0116899999999999999999999999
Q ss_pred hhHHHHHHHHH
Q 046651 245 YGSKILRNFRE 255 (392)
Q Consensus 245 ~G~~I~~NF~~ 255 (392)
.|++||+||++
T Consensus 180 ~G~~i~~nf~~ 190 (191)
T PRK06774 180 QGHQLLDNFLK 190 (191)
T ss_pred cHHHHHHHHhh
Confidence 99999999975
|
|
| >TIGR01823 PabB-fungal aminodeoxychorismate synthase, fungal clade | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-44 Score=385.31 Aligned_cols=203 Identities=33% Similarity=0.591 Sum_probs=170.1
Q ss_pred CccEEEEEECCCCchHHHHHHHHHhCCC--CeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHH
Q 046651 3 EFVRTLLIDNYDSYTYNIYQELSTINGV--PPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVL 80 (392)
Q Consensus 3 ~~~r~LlIDnyDSyT~nl~q~L~~v~G~--~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll 80 (392)
..||||||||||||||||+++|++++|. +++||++|...++.+.. + ..||+||||||||+|....+++++.+++
T Consensus 4 ~~~~iL~ID~~DSft~nl~~~l~~~~g~~~~v~vv~~d~~~~~~~~~-l---~~~D~VVIspGPG~p~~~~~~~i~~~i~ 79 (742)
T TIGR01823 4 QRLHVLFIDSYDSFTYNVVRLLEQQTDISVHVTTVHSDTFQDQLLEL-L---PLFDAIVVGPGPGNPNNAQDMGIISELW 79 (742)
T ss_pred CCceEEEEeCCcchHHHHHHHHHHhcCCCcEEEEEeCCCCchhhhhh-h---cCCCEEEECCCCCCccchhhhHHHHHHH
Confidence 4689999999999999999999998775 45888998765443322 2 5799999999999999888899888877
Q ss_pred HHc--CCCCEEEEcHHHHHHHHHhCCeeeecCCCceeceeEEEecCCcccccCCCCCCcceEEEeeecceeecCCCCCCc
Q 046651 81 LEC--WDVPILGVCLGHQALGFVHGADIVHAPEPVHGRLSEIVHNGDRLFHDIPSGQNSGFKVVRYHSLIIDADSLPKEL 158 (392)
Q Consensus 81 ~~~--~~iPILGVCLGhQ~La~a~Gg~V~~apep~hG~~s~i~h~g~~LF~~ips~~~s~f~VvryHSl~V~~~sLP~~l 158 (392)
... .++||||||+|||+|+.++||+|.+++.++||..+.|.+.+..||.+++. |+|++||++.++.. .|+.+
T Consensus 80 ~~~~~~~iPvLGIClG~QlLa~a~GG~v~~~~~~~hG~~~~v~~~~~~lf~gl~~-----~~v~~~Hs~~v~~~-~~~~l 153 (742)
T TIGR01823 80 ELANLDEVPVLGICLGFQSLCLAQGADISRLPTPKHGQVYEMHTNDAAIFCGLFS-----VKSTRYHSLYANPE-GIDTL 153 (742)
T ss_pred HhcccCCCcEEEEchhhHHHHhhcCCEEEECCCCCcCeEEEEEECCccccCCCCC-----CceeEEEEEEccCC-CCCcc
Confidence 542 37999999999999999999999999999999998899988999999974 78999999999765 45554
Q ss_pred EEEEEecCCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCcccccccccCCcceEEEEEecCCCEEEEeccC
Q 046651 159 IPIAWSNSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGIMHSTRPHYGVQFHP 238 (392)
Q Consensus 159 ~~iAwt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vmgi~h~~~P~~GVQFHP 238 (392)
..++++.+.+ + .++||++|.++|+|||||||
T Consensus 154 ~~~~~a~~~~------------~-------------------------------------~~i~ai~h~~~pi~GVQFHP 184 (742)
T TIGR01823 154 LPLCLTEDEE------------G-------------------------------------IILMSAQTKKKPWFGVQYHP 184 (742)
T ss_pred eEEEEEEcCC------------C-------------------------------------CeEEEEEEcCCceEEEEeCc
Confidence 3343332210 1 18999999999999999999
Q ss_pred CCCCCchh-HHHHHHHHHHHHHhhhhc
Q 046651 239 ESIATCYG-SKILRNFREITEDYWKRL 264 (392)
Q Consensus 239 Esiat~~G-~~I~~NF~~l~~~~~~~~ 264 (392)
|+..+++| .+||+||++++..++++.
T Consensus 185 E~~~s~~g~~~Lf~nFl~~~~~~~~~~ 211 (742)
T TIGR01823 185 ESCCSELGSGKLVSNFLKLAFINNVKT 211 (742)
T ss_pred ccCCCCccHHHHHHHHHHHHHHhhhhc
Confidence 99999886 999999999999887653
|
This model represents the fungal clade of a para-aminobenzoate synthesis enzyme, aminodeoxychorismate synthase, which acts on chorismate in a pathway that yields PABA, a precursor of folate. |
| >TIGR00566 trpG_papA glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-44 Score=329.60 Aligned_cols=186 Identities=44% Similarity=0.696 Sum_probs=164.9
Q ss_pred EEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHH-cC
Q 046651 6 RTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLE-CW 84 (392)
Q Consensus 6 r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~-~~ 84 (392)
|+||||||||||+|++++|++ .|.+++|++++..+++++.. ..+|+||||||||+|.... ...+++++ ..
T Consensus 1 ~il~id~~dsft~~~~~~l~~-~g~~v~v~~~~~~~~~~~~~-----~~~d~iilsgGpg~p~~~~---~~~~~i~~~~~ 71 (188)
T TIGR00566 1 MVLMIDNYDSFTYNLVQYFCE-LGAEVVVKRNDSLTLQEIEA-----LLPLLIVISPGPCTPNEAG---ISLEAIRHFAG 71 (188)
T ss_pred CEEEEECCcCHHHHHHHHHHH-cCCceEEEECCCCCHHHHHh-----cCCCEEEEcCCCCChhhcc---hhHHHHHHhcc
Confidence 399999999999999999999 69999999999877888765 4699999999999997532 23455554 35
Q ss_pred CCCEEEEcHHHHHHHHHhCCeeeecCCCceeceeEEEecCCcccccCCCCCCcceEEEeeecceeecCCCCCCcEEEEEe
Q 046651 85 DVPILGVCLGHQALGFVHGADIVHAPEPVHGRLSEIVHNGDRLFHDIPSGQNSGFKVVRYHSLIIDADSLPKELIPIAWS 164 (392)
Q Consensus 85 ~iPILGVCLGhQ~La~a~Gg~V~~apep~hG~~s~i~h~g~~LF~~ips~~~s~f~VvryHSl~V~~~sLP~~l~~iAwt 164 (392)
++||||||+|||+|+.++||+|.+.+.+.||....|.++++.+|.+++.. |++.+||++.|++..+|++++++|++
T Consensus 72 ~~PvLGIC~G~Qll~~~~GG~v~~~~~~~~g~~~~v~~~~~~~~~~l~~~----~~v~~~H~~~v~~~~l~~~~~v~a~s 147 (188)
T TIGR00566 72 KLPILGVCLGHQAMGQAFGGDVVRANTVMHGKTSEIEHNGAGIFRGLFNP----LTATRYHSLVVEPETLPTCFPVTAWE 147 (188)
T ss_pred CCCEEEECHHHHHHHHHcCCEEeeCCCccccceEEEEECCCccccCCCCC----cEEEEcccceEecccCCCceEEEEEc
Confidence 89999999999999999999999999999999888989888999999876 99999999999766699999999998
Q ss_pred cCCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCcccccccccCCcceEEEEEecCCCEEEEeccCCCCCCc
Q 046651 165 NSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGIMHSTRPHYGVQFHPESIATC 244 (392)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vmgi~h~~~P~~GVQFHPEsiat~ 244 (392)
++. + .+||++|.++|+||||||||++.|+
T Consensus 148 ~~~-------------~--------------------------------------~v~a~~~~~~~i~gvQfHPE~~~t~ 176 (188)
T TIGR00566 148 EEN-------------I--------------------------------------EIMAIRHRDLPLEGVQFHPESILSE 176 (188)
T ss_pred CCC-------------C--------------------------------------EEEEEEeCCCCEEEEEeCCCccCCc
Confidence 751 2 7999999999999999999999999
Q ss_pred hhHHHHHHHHH
Q 046651 245 YGSKILRNFRE 255 (392)
Q Consensus 245 ~G~~I~~NF~~ 255 (392)
+|.+||+||++
T Consensus 177 ~G~~il~nfl~ 187 (188)
T TIGR00566 177 QGHQLLANFLH 187 (188)
T ss_pred ccHHHHHHHHh
Confidence 99999999974
|
This model describes the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. This model covers a subset of the sequences described by the pfam model GATase. |
| >CHL00101 trpG anthranilate synthase component 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-43 Score=322.81 Aligned_cols=187 Identities=45% Similarity=0.781 Sum_probs=165.3
Q ss_pred EEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHH-cC
Q 046651 6 RTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLE-CW 84 (392)
Q Consensus 6 r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~-~~ 84 (392)
|||||||||||||||.+.|++ .|++++++++++.+.+++.. ..+|+||||||||+|.+.. ....+++. ..
T Consensus 1 ~iliid~~dsft~~l~~~l~~-~g~~~~v~~~~~~~~~~~~~-----~~~dgiiisgGpg~~~~~~---~~~~i~~~~~~ 71 (190)
T CHL00101 1 MILIIDNYDSFTYNLVQSLGE-LNSDVLVCRNDEIDLSKIKN-----LNIRHIIISPGPGHPRDSG---ISLDVISSYAP 71 (190)
T ss_pred CEEEEECCCchHHHHHHHHHh-cCCCEEEEECCCCCHHHHhh-----CCCCEEEECCCCCChHHCc---chHHHHHHhcC
Confidence 499999999999999999998 79999999998766777654 5699999999999997532 23344433 35
Q ss_pred CCCEEEEcHHHHHHHHHhCCeeeecCCCceeceeEEEecCCcccccCCCCCCcceEEEeeecceeecCCCCCCcEEEEEe
Q 046651 85 DVPILGVCLGHQALGFVHGADIVHAPEPVHGRLSEIVHNGDRLFHDIPSGQNSGFKVVRYHSLIIDADSLPKELIPIAWS 164 (392)
Q Consensus 85 ~iPILGVCLGhQ~La~a~Gg~V~~apep~hG~~s~i~h~g~~LF~~ips~~~s~f~VvryHSl~V~~~sLP~~l~~iAwt 164 (392)
++||||||+|||+|+.++||+|.+.+.+.||....+.++.+++|.++|.. |.+.+||++.|+..+||++++++|++
T Consensus 72 ~~PiLGIClG~Qlla~~~Gg~V~~~~~~~~g~~~~~~~~~~~l~~~~~~~----~~v~~~H~~~v~~~~lp~~~~vla~s 147 (190)
T CHL00101 72 YIPILGVCLGHQSIGYLFGGKIIKAPKPMHGKTSKIYHNHDDLFQGLPNP----FTATRYHSLIIDPLNLPSPLEITAWT 147 (190)
T ss_pred CCcEEEEchhHHHHHHHhCCEEEECCCcccCceeeEeeCCcHhhccCCCc----eEEEcchhheeecccCCCceEEEEEc
Confidence 89999999999999999999999999999999888888888899999987 99999999999865699999999998
Q ss_pred cCCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCcccccccccCCcceEEEEEecCCC-EEEEeccCCCCCC
Q 046651 165 NSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGIMHSTRP-HYGVQFHPESIAT 243 (392)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vmgi~h~~~P-~~GVQFHPEsiat 243 (392)
++ + .+||++|.++| +||||||||+..|
T Consensus 148 ~~--------------~--------------------------------------~v~a~~~~~~~~i~gvQfHPE~~~~ 175 (190)
T CHL00101 148 ED--------------G--------------------------------------LIMACRHKKYKMLRGIQFHPESLLT 175 (190)
T ss_pred CC--------------C--------------------------------------cEEEEEeCCCCCEEEEEeCCccCCC
Confidence 87 6 89999999999 9999999999889
Q ss_pred chhHHHHHHHHHHH
Q 046651 244 CYGSKILRNFREIT 257 (392)
Q Consensus 244 ~~G~~I~~NF~~l~ 257 (392)
++|.+||+||+++.
T Consensus 176 ~~g~~l~~nf~~~~ 189 (190)
T CHL00101 176 THGQQILRNFLSLS 189 (190)
T ss_pred hhHHHHHHHHHhhh
Confidence 99999999999864
|
|
| >PRK08857 para-aminobenzoate synthase component II; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-43 Score=322.10 Aligned_cols=191 Identities=42% Similarity=0.660 Sum_probs=163.1
Q ss_pred EEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHH-cC
Q 046651 6 RTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLE-CW 84 (392)
Q Consensus 6 r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~-~~ 84 (392)
||||||||||||||+++.|.+ .|.++.++++++.+.+++.. .++|+||+||||++|...... .++++. ..
T Consensus 1 ~il~id~~dsft~~~~~~l~~-~g~~~~~~~~~~~~~~~~~~-----~~~~~iilsgGp~~~~~~~~~---~~~i~~~~~ 71 (193)
T PRK08857 1 MLLMIDNYDSFTYNLYQYFCE-LGAQVKVVRNDEIDIDGIEA-----LNPTHLVISPGPCTPNEAGIS---LQAIEHFAG 71 (193)
T ss_pred CEEEEECCCCcHHHHHHHHHH-CCCcEEEEECCCCCHHHHhh-----CCCCEEEEeCCCCChHHCcch---HHHHHHhcC
Confidence 499999999999999999988 79999999998765665533 568999999999999854332 334433 35
Q ss_pred CCCEEEEcHHHHHHHHHhCCeeeecCCCceeceeEEEecCCcccccCCCCCCcceEEEeeecceeecCCCCCCcEEEEEe
Q 046651 85 DVPILGVCLGHQALGFVHGADIVHAPEPVHGRLSEIVHNGDRLFHDIPSGQNSGFKVVRYHSLIIDADSLPKELIPIAWS 164 (392)
Q Consensus 85 ~iPILGVCLGhQ~La~a~Gg~V~~apep~hG~~s~i~h~g~~LF~~ips~~~s~f~VvryHSl~V~~~sLP~~l~~iAwt 164 (392)
++||||||+|||+|+.++||+|.+.+.+.||....+.++++++|.++|.. ++|.+||++.|+..+||++++++||+
T Consensus 72 ~~PiLGIClG~Qlia~a~Gg~v~~~~~~~~G~~~~~~~~~~~l~~~~~~~----~~v~~~H~~~v~~~~lp~~~~v~a~s 147 (193)
T PRK08857 72 KLPILGVCLGHQAIAQVFGGQVVRARQVMHGKTSPIRHTGRSVFKGLNNP----LTVTRYHSLVVKNDTLPECFELTAWT 147 (193)
T ss_pred CCCEEEEcHHHHHHHHHhCCEEEeCCCceeCceEEEEECCCcccccCCCc----cEEEEccEEEEEcCCCCCCeEEEEEe
Confidence 99999999999999999999999999999999777888888999999887 99999999999866699999999999
Q ss_pred cCCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCcccccccccCCcceEEEEEecCCCEEEEeccCCCCCCc
Q 046651 165 NSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGIMHSTRPHYGVQFHPESIATC 244 (392)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vmgi~h~~~P~~GVQFHPEsiat~ 244 (392)
+..+ + ....+||++|.++|+||||||||+..|+
T Consensus 148 ~~~~------------~-----------------------------------~~~~i~~~~~~~~pi~gvQfHPE~~~t~ 180 (193)
T PRK08857 148 ELED------------G-----------------------------------SMDEIMGFQHKTLPIEAVQFHPESIKTE 180 (193)
T ss_pred cCcC------------C-----------------------------------CcceEEEEEeCCCCEEEEeeCCCcCCCc
Confidence 7310 1 0127999999999999999999999999
Q ss_pred hhHHHHHHHHHH
Q 046651 245 YGSKILRNFREI 256 (392)
Q Consensus 245 ~G~~I~~NF~~l 256 (392)
+|++||+||++-
T Consensus 181 ~g~~i~~nFl~~ 192 (193)
T PRK08857 181 QGHQLLANFLAR 192 (193)
T ss_pred chHHHHHHHHhh
Confidence 999999999863
|
|
| >PRK06895 putative anthranilate synthase component II; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-42 Score=318.59 Aligned_cols=186 Identities=34% Similarity=0.597 Sum_probs=162.0
Q ss_pred ccEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHH-
Q 046651 4 FVRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLE- 82 (392)
Q Consensus 4 ~~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~- 82 (392)
.||+||||||||||+||.++|.+ .|.++.++++++.+.+++ ..+|+|||+||||+|.. .....++|++
T Consensus 1 ~~~iliid~~dsf~~~i~~~l~~-~g~~~~v~~~~~~~~~~l-------~~~d~iIi~gGp~~~~~---~~~~~~~i~~~ 69 (190)
T PRK06895 1 ATKLLIINNHDSFTFNLVDLIRK-LGVPMQVVNVEDLDLDEV-------ENFSHILISPGPDVPRA---YPQLFAMLERY 69 (190)
T ss_pred CcEEEEEeCCCchHHHHHHHHHH-cCCcEEEEECCccChhHh-------ccCCEEEECCCCCChHH---hhHHHHHHHHh
Confidence 48999999999999999999998 699999999876545554 45999999999998743 3334556654
Q ss_pred cCCCCEEEEcHHHHHHHHHhCCeeeecCCCceeceeEEEe-cCCcccccCCCCCCcceEEEeeecceeecCCCCCCcEEE
Q 046651 83 CWDVPILGVCLGHQALGFVHGADIVHAPEPVHGRLSEIVH-NGDRLFHDIPSGQNSGFKVVRYHSLIIDADSLPKELIPI 161 (392)
Q Consensus 83 ~~~iPILGVCLGhQ~La~a~Gg~V~~apep~hG~~s~i~h-~g~~LF~~ips~~~s~f~VvryHSl~V~~~sLP~~l~~i 161 (392)
..++||||||+|||+|+.++||+|.+.+...||....+.. ++++||+++|.. +.|.+||++.++.+++|+.+..+
T Consensus 70 ~~~~PiLGIClG~Qlla~~~Gg~V~~~~~~~~g~~~~v~~~~~~~l~~~~~~~----~~v~~~Hs~~v~~~~lp~~l~~~ 145 (190)
T PRK06895 70 HQHKSILGVCLGHQTLCEFFGGELYNLNNVRHGQQRPLKVRSNSPLFDGLPEE----FNIGLYHSWAVSEENFPTPLEIT 145 (190)
T ss_pred cCCCCEEEEcHHHHHHHHHhCCeEeecCCCccCceEEEEECCCChhhhcCCCc----eEEEcchhheecccccCCCeEEE
Confidence 3589999999999999999999999988888998777654 568899999988 99999999999866699999999
Q ss_pred EEecCCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCcccccccccCCcceEEEEEecCCCEEEEeccCCCC
Q 046651 162 AWSNSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGIMHSTRPHYGVQFHPESI 241 (392)
Q Consensus 162 Awt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vmgi~h~~~P~~GVQFHPEsi 241 (392)
|++++ + .+|+++|.++|+||+|||||+.
T Consensus 146 a~~~~--------------~--------------------------------------~i~a~~~~~~pi~GvQFHPE~~ 173 (190)
T PRK06895 146 AVCDE--------------N--------------------------------------VVMAMQHKTLPIYGVQFHPESY 173 (190)
T ss_pred EECCC--------------C--------------------------------------cEEEEEECCCCEEEEEeCCCcC
Confidence 98766 5 8999999999999999999999
Q ss_pred CCchhHHHHHHHHHH
Q 046651 242 ATCYGSKILRNFREI 256 (392)
Q Consensus 242 at~~G~~I~~NF~~l 256 (392)
+|++|.+|++||+++
T Consensus 174 ~~~~g~~il~nf~~~ 188 (190)
T PRK06895 174 ISEFGEQILRNWLAI 188 (190)
T ss_pred CCcchHHHHHHHHhh
Confidence 999999999999875
|
|
| >PLN02335 anthranilate synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-42 Score=324.26 Aligned_cols=191 Identities=41% Similarity=0.688 Sum_probs=166.4
Q ss_pred cEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHHc-
Q 046651 5 VRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLEC- 83 (392)
Q Consensus 5 ~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~~- 83 (392)
.|||||||||||||||.++|++ .|+++.|+++|..+.+++.. ..+|+||||||||+|.+. +...+++++.
T Consensus 19 ~~ilviD~~dsft~~i~~~L~~-~g~~~~v~~~~~~~~~~~~~-----~~~d~iVisgGPg~p~d~---~~~~~~~~~~~ 89 (222)
T PLN02335 19 GPIIVIDNYDSFTYNLCQYMGE-LGCHFEVYRNDELTVEELKR-----KNPRGVLISPGPGTPQDS---GISLQTVLELG 89 (222)
T ss_pred CcEEEEECCCCHHHHHHHHHHH-CCCcEEEEECCCCCHHHHHh-----cCCCEEEEcCCCCChhhc---cchHHHHHHhC
Confidence 6899999999999999999999 79999999998766777654 569999999999999743 3345555553
Q ss_pred CCCCEEEEcHHHHHHHHHhCCeeeecCC-CceeceeEEEecC---CcccccCCCCCCcceEEEeeecceeecCCCCCC-c
Q 046651 84 WDVPILGVCLGHQALGFVHGADIVHAPE-PVHGRLSEIVHNG---DRLFHDIPSGQNSGFKVVRYHSLIIDADSLPKE-L 158 (392)
Q Consensus 84 ~~iPILGVCLGhQ~La~a~Gg~V~~ape-p~hG~~s~i~h~g---~~LF~~ips~~~s~f~VvryHSl~V~~~sLP~~-l 158 (392)
.++||||||||||+|+.++||+|.+.+. ..||....+.+.. ++||.++|.. |.+++||++.|+++++|++ +
T Consensus 90 ~~~PiLGIClG~QlLa~alGg~v~~~~~~~~~G~~~~v~~~~~~~~~Lf~~l~~~----~~v~~~H~~~v~~~~lp~~~~ 165 (222)
T PLN02335 90 PLVPLFGVCMGLQCIGEAFGGKIVRSPFGVMHGKSSPVHYDEKGEEGLFSGLPNP----FTAGRYHSLVIEKDTFPSDEL 165 (222)
T ss_pred CCCCEEEecHHHHHHHHHhCCEEEeCCCccccCceeeeEECCCCCChhhhCCCCC----CEEEechhheEecccCCCCce
Confidence 4799999999999999999999999875 4788888877643 4899999987 9999999999987779987 9
Q ss_pred EEEEEecCCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCcccccccccCCcceEEEEEecCCC-EEEEecc
Q 046651 159 IPIAWSNSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGIMHSTRP-HYGVQFH 237 (392)
Q Consensus 159 ~~iAwt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vmgi~h~~~P-~~GVQFH 237 (392)
+++||+++ + .+|+++|++.| +||||||
T Consensus 166 ~v~a~~~~--------------~--------------------------------------~v~ai~~~~~~~i~GvQfH 193 (222)
T PLN02335 166 EVTAWTED--------------G--------------------------------------LIMAARHRKYKHIQGVQFH 193 (222)
T ss_pred EEEEEcCC--------------C--------------------------------------CEEEEEecCCCCEEEEEeC
Confidence 99999977 6 89999999888 8999999
Q ss_pred CCCCCCchhHHHHHHHHHHHHHh
Q 046651 238 PESIATCYGSKILRNFREITEDY 260 (392)
Q Consensus 238 PEsiat~~G~~I~~NF~~l~~~~ 260 (392)
||++.+++|..||+||++++.++
T Consensus 194 PE~~~~~~g~~i~~nF~~~~~~~ 216 (222)
T PLN02335 194 PESIITTEGKTIVRNFIKIIEKK 216 (222)
T ss_pred CCCCCChhHHHHHHHHHHHHHhh
Confidence 99999999999999999988754
|
|
| >PRK05670 anthranilate synthase component II; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-42 Score=313.89 Aligned_cols=187 Identities=51% Similarity=0.828 Sum_probs=164.2
Q ss_pred EEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHH-cC
Q 046651 6 RTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLE-CW 84 (392)
Q Consensus 6 r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~-~~ 84 (392)
||||||||||||+|+.+.|.+ .|.++++++++....+++.. ..+|+||||||||+|... +...+++++ ..
T Consensus 1 ~iliid~~d~f~~~i~~~l~~-~g~~~~v~~~~~~~~~~~~~-----~~~dglIlsgGpg~~~d~---~~~~~~l~~~~~ 71 (189)
T PRK05670 1 MILLIDNYDSFTYNLVQYLGE-LGAEVVVYRNDEITLEEIEA-----LNPDAIVLSPGPGTPAEA---GISLELIREFAG 71 (189)
T ss_pred CEEEEECCCchHHHHHHHHHH-CCCcEEEEECCCCCHHHHHh-----CCCCEEEEcCCCCChHHc---chHHHHHHHhcC
Confidence 499999999999999999998 79999999998765666544 459999999999999643 234455554 34
Q ss_pred CCCEEEEcHHHHHHHHHhCCeeeecCCCceeceeEEEecCCcccccCCCCCCcceEEEeeecceeecCCCCCCcEEEEEe
Q 046651 85 DVPILGVCLGHQALGFVHGADIVHAPEPVHGRLSEIVHNGDRLFHDIPSGQNSGFKVVRYHSLIIDADSLPKELIPIAWS 164 (392)
Q Consensus 85 ~iPILGVCLGhQ~La~a~Gg~V~~apep~hG~~s~i~h~g~~LF~~ips~~~s~f~VvryHSl~V~~~sLP~~l~~iAwt 164 (392)
++||||||+|||+|+.++||+|.+.+.+.||....+.+.++++|+++|.. +.+.++|++.|...+||++++++|++
T Consensus 72 ~~PvLGIClG~Qlla~alGg~v~~~~~~~~g~~~~v~~~~~~l~~~~~~~----~~v~~~H~~~v~~~~lp~~~~~la~s 147 (189)
T PRK05670 72 KVPILGVCLGHQAIGEAFGGKVVRAKEIMHGKTSPIEHDGSGIFAGLPNP----FTVTRYHSLVVDRESLPDCLEVTAWT 147 (189)
T ss_pred CCCEEEECHHHHHHHHHhCCEEEecCCcccCceeEEEeCCCchhccCCCC----cEEEcchhheeccccCCCceEEEEEe
Confidence 79999999999999999999999999889998888877888999999887 89999999999755599999999999
Q ss_pred cCCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCcccccccccCCcceEEEEEecCCCEEEEeccCCCCCCc
Q 046651 165 NSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGIMHSTRPHYGVQFHPESIATC 244 (392)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vmgi~h~~~P~~GVQFHPEsiat~ 244 (392)
++ + .+||+++.++|+||+|||||+..++
T Consensus 148 ~~--------------~--------------------------------------~i~a~~~~~~~~~gvQfHPE~~~~~ 175 (189)
T PRK05670 148 DD--------------G--------------------------------------EIMGVRHKELPIYGVQFHPESILTE 175 (189)
T ss_pred CC--------------C--------------------------------------cEEEEEECCCCEEEEeeCCCcCCCc
Confidence 76 6 8999999999999999999998899
Q ss_pred hhHHHHHHHHHHH
Q 046651 245 YGSKILRNFREIT 257 (392)
Q Consensus 245 ~G~~I~~NF~~l~ 257 (392)
.|.+||+||++++
T Consensus 176 ~g~~i~~~F~~~~ 188 (189)
T PRK05670 176 HGHKLLENFLELA 188 (189)
T ss_pred chHHHHHHHHHhh
Confidence 9999999999975
|
|
| >PRK09522 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-42 Score=359.09 Aligned_cols=187 Identities=34% Similarity=0.551 Sum_probs=164.7
Q ss_pred cEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCC---HHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHH
Q 046651 5 VRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWT---WRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLL 81 (392)
Q Consensus 5 ~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~---~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~ 81 (392)
||||||||||||||||+++|++ +|.+++|++++.+. .+++.. .++|+||||||||+|.+. ++...+++
T Consensus 2 ~~iLiIDn~dsft~nl~~~lr~-~g~~v~V~~~~~~~~~~~~~l~~-----~~~~~IIlSpGPg~p~d~---~~~~~i~~ 72 (531)
T PRK09522 2 ADILLLDNIDSFTYNLADQLRS-NGHNVVIYRNHIPAQTLIERLAT-----MSNPVLMLSPGPGVPSEA---GCMPELLT 72 (531)
T ss_pred CeEEEEeCCChHHHHHHHHHHH-CCCCEEEEECCCCCccCHHHHHh-----cCcCEEEEcCCCCChhhC---CCCHHHHH
Confidence 6999999999999999999988 79999999998653 344433 458899999999999743 33445554
Q ss_pred H-cCCCCEEEEcHHHHHHHHHhCCeeeecCCCceeceeEEEecCCcccccCCCCCCcceEEEeeecceeecCCCCCCcEE
Q 046651 82 E-CWDVPILGVCLGHQALGFVHGADIVHAPEPVHGRLSEIVHNGDRLFHDIPSGQNSGFKVVRYHSLIIDADSLPKELIP 160 (392)
Q Consensus 82 ~-~~~iPILGVCLGhQ~La~a~Gg~V~~apep~hG~~s~i~h~g~~LF~~ips~~~s~f~VvryHSl~V~~~sLP~~l~~ 160 (392)
+ ..++||||||+|||+|+.++||+|.+.+++.||+...+.|+++.+|.++|.. |+|++||++.|.. +|+++++
T Consensus 73 ~~~~~iPILGIClG~QlLa~a~GG~V~~~~~~~~G~~~~i~~~~~~lf~~~~~~----~~v~~~Hs~~v~~--lP~~l~v 146 (531)
T PRK09522 73 RLRGKLPIIGICLGHQAIVEAYGGYVGQAGEILHGKASSIEHDGQAMFAGLTNP----LPVARYHSLVGSN--IPAGLTI 146 (531)
T ss_pred HHhcCCCEEEEcHHHHHHHHhcCCEEEeCCceeeeeEEEEeecCCccccCCCCC----cEEEEehheeccc--CCCCcEE
Confidence 3 3589999999999999999999999999999999999999999999999987 9999999999976 9999999
Q ss_pred EEEecCCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCcccccccccCCcceEEEEEecCCCEEEEeccCCC
Q 046651 161 IAWSNSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGIMHSTRPHYGVQFHPES 240 (392)
Q Consensus 161 iAwt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vmgi~h~~~P~~GVQFHPEs 240 (392)
+|++ + + .+||++|.++|+||||||||+
T Consensus 147 lA~s-d--------------~--------------------------------------~v~ai~~~~~~i~GVQFHPEs 173 (531)
T PRK09522 147 NAHF-N--------------G--------------------------------------MVMAVRHDADRVCGFQFHPES 173 (531)
T ss_pred EEec-C--------------C--------------------------------------CEEEEEECCCCEEEEEecCcc
Confidence 9985 4 4 799999999999999999999
Q ss_pred CCCchhHHHHHHHHHHHHH
Q 046651 241 IATCYGSKILRNFREITED 259 (392)
Q Consensus 241 iat~~G~~I~~NF~~l~~~ 259 (392)
+.|++|.+||+||++++..
T Consensus 174 ~~T~~G~~il~NFl~~~~~ 192 (531)
T PRK09522 174 ILTTQGARLLEQTLAWAQQ 192 (531)
T ss_pred ccCcchHHHHHHHHHHHhh
Confidence 9999999999999999853
|
|
| >PRK05637 anthranilate synthase component II; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-41 Score=313.65 Aligned_cols=191 Identities=30% Similarity=0.472 Sum_probs=158.4
Q ss_pred cEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHH-c
Q 046651 5 VRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLE-C 83 (392)
Q Consensus 5 ~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~-~ 83 (392)
.|||||||||||||||+++|++ .|+.++|++++. +++++.. ..+|+||||||||+|.+. +...++++. .
T Consensus 2 ~~il~iD~~dsf~~nl~~~l~~-~g~~~~v~~~~~-~~~~l~~-----~~~~~iIlsgGPg~~~d~---~~~~~li~~~~ 71 (208)
T PRK05637 2 THVVLIDNHDSFVYNLVDAFAV-AGYKCTVFRNTV-PVEEILA-----ANPDLICLSPGPGHPRDA---GNMMALIDRTL 71 (208)
T ss_pred CEEEEEECCcCHHHHHHHHHHH-CCCcEEEEeCCC-CHHHHHh-----cCCCEEEEeCCCCCHHHh---hHHHHHHHHHh
Confidence 4799999999999999999998 799999999986 4777754 579999999999999643 334455644 3
Q ss_pred CCCCEEEEcHHHHHHHHHhCCeeeecCCCceeceeEEEec----CCcccccCCCCC--------CcceEEEeeecceeec
Q 046651 84 WDVPILGVCLGHQALGFVHGADIVHAPEPVHGRLSEIVHN----GDRLFHDIPSGQ--------NSGFKVVRYHSLIIDA 151 (392)
Q Consensus 84 ~~iPILGVCLGhQ~La~a~Gg~V~~apep~hG~~s~i~h~----g~~LF~~ips~~--------~s~f~VvryHSl~V~~ 151 (392)
.++||||||+|||+|+.++||+|.+.. +.+|....+..+ .+++|.++|... ...++|.+||++.|..
T Consensus 72 ~~~PiLGIClG~Qlla~alGG~V~~~~-~~~G~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~V~~~H~~~v~~ 150 (208)
T PRK05637 72 GQIPLLGICLGFQALLEHHGGKVEPCG-PVHGTTDNMILTDAGVQSPVFAGLATDVEPDHPEIPGRKVPIARYHSLGCVV 150 (208)
T ss_pred CCCCEEEEcHHHHHHHHHcCCeeccCC-cccceEEEeEECCCCCCCcccCCCCcccccccccccCCceEEEEechhhhhc
Confidence 479999999999999999999999875 688887766544 457999987310 0128899999999987
Q ss_pred CCCCCCcEEEEEecCCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCcccccccccCCcceEEEEEecCCCE
Q 046651 152 DSLPKELIPIAWSNSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGIMHSTRPH 231 (392)
Q Consensus 152 ~sLP~~l~~iAwt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vmgi~h~~~P~ 231 (392)
+|++++++||+++.. + .++|++++.++++
T Consensus 151 --lp~~~~vlA~s~~~~------------~-------------------------------------~v~~a~~~~~~~~ 179 (208)
T PRK05637 151 --APDGMESLGTCSSEI------------G-------------------------------------PVIMAAETTDGKA 179 (208)
T ss_pred --CCCCeEEEEEecCCC------------C-------------------------------------CEEEEEEECCCCE
Confidence 999999999986510 1 1789999999999
Q ss_pred EEEeccCCCCCCchhHHHHHHHHHHH
Q 046651 232 YGVQFHPESIATCYGSKILRNFREIT 257 (392)
Q Consensus 232 ~GVQFHPEsiat~~G~~I~~NF~~l~ 257 (392)
||||||||++.|++|.+||+||++-.
T Consensus 180 ~GvQfHPE~~~T~~G~~il~nfl~~~ 205 (208)
T PRK05637 180 IGLQFHPESVLSPTGPIILSRCVEQL 205 (208)
T ss_pred EEEEeCCccCcCCCHHHHHHHHHHHH
Confidence 99999999999999999999999643
|
|
| >PRK07765 para-aminobenzoate synthase component II; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-39 Score=301.12 Aligned_cols=191 Identities=41% Similarity=0.708 Sum_probs=167.0
Q ss_pred cEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHHc-
Q 046651 5 VRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLEC- 83 (392)
Q Consensus 5 ~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~~- 83 (392)
||+|+|||+|+|++|+.+.|.+ .|+.+++++++.+..++...++ ..||+|||||||++|... ....++++++
T Consensus 1 ~~ilv~d~~~~~~~~~~~~l~~-~G~~~~~~~~~~~~~~~~~~~~---~~~dgliisGGp~~~~~~---~~~~~~i~~~~ 73 (214)
T PRK07765 1 MRILVVDNYDSFVFNLVQYLGQ-LGVEAEVWRNDDPRLADEAAVA---AQFDGVLLSPGPGTPERA---GASIDMVRACA 73 (214)
T ss_pred CeEEEEECCCcHHHHHHHHHHH-cCCcEEEEECCCcCHHHHHHhh---cCCCEEEECCCCCChhhc---chHHHHHHHHH
Confidence 8999999999999999999988 7999999999875334443323 579999999999988643 3344555552
Q ss_pred -CCCCEEEEcHHHHHHHHHhCCeeeecCCCceeceeEEEecCCcccccCCCCCCcceEEEeeecceeecCCCCCCcEEEE
Q 046651 84 -WDVPILGVCLGHQALGFVHGADIVHAPEPVHGRLSEIVHNGDRLFHDIPSGQNSGFKVVRYHSLIIDADSLPKELIPIA 162 (392)
Q Consensus 84 -~~iPILGVCLGhQ~La~a~Gg~V~~apep~hG~~s~i~h~g~~LF~~ips~~~s~f~VvryHSl~V~~~sLP~~l~~iA 162 (392)
.++||||||+|||+|+.++||+|.+.+.+.+|....+.+....+|.+++.. |++.++|++.|.+.+||+++.++|
T Consensus 74 ~~~~PiLGIC~G~Qlla~a~GG~v~~~~~~~~g~~~~v~~~~~~~~~~~~~~----~~v~~~H~~~v~~~~lp~~~~vla 149 (214)
T PRK07765 74 AAGTPLLGVCLGHQAIGVAFGATVDRAPELLHGKTSSVHHTGVGVLAGLPDP----FTATRYHSLTILPETLPAELEVTA 149 (214)
T ss_pred hCCCCEEEEccCHHHHHHHhCCEEeeCCCCccCceeEEEECCCccccCCCCc----cEEEecchheEecccCCCceEEEE
Confidence 489999999999999999999999999999999888888888899999887 999999999998666999999999
Q ss_pred EecCCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCcccccccccCCcceEEEEEecCCCEEEEeccCCCCC
Q 046651 163 WSNSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGIMHSTRPHYGVQFHPESIA 242 (392)
Q Consensus 163 wt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vmgi~h~~~P~~GVQFHPEsia 242 (392)
++++ + .+||+++.++++||||||||++.
T Consensus 150 ~s~~--------------~--------------------------------------~vqa~~~~~~~i~gvQfHPE~~~ 177 (214)
T PRK07765 150 RTDS--------------G--------------------------------------VIMAVRHRELPIHGVQFHPESVL 177 (214)
T ss_pred EcCC--------------C--------------------------------------cEEEEEeCCCCEEEEeeCCCccc
Confidence 9987 6 89999999999999999999988
Q ss_pred CchhHHHHHHHHHHHH
Q 046651 243 TCYGSKILRNFREITE 258 (392)
Q Consensus 243 t~~G~~I~~NF~~l~~ 258 (392)
|..|.+|++||.++|.
T Consensus 178 t~~g~~~l~~f~~~~~ 193 (214)
T PRK07765 178 TEGGHRMLANWLTVCG 193 (214)
T ss_pred CcchHHHHHHHHHHhc
Confidence 9999999999999874
|
|
| >PRK14607 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-38 Score=331.80 Aligned_cols=189 Identities=49% Similarity=0.763 Sum_probs=165.9
Q ss_pred EEEEEECCCCchHHHHHHHHHhCCCC-eEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHH-c
Q 046651 6 RTLLIDNYDSYTYNIYQELSTINGVP-PVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLE-C 83 (392)
Q Consensus 6 r~LlIDnyDSyT~nl~q~L~~v~G~~-pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~-~ 83 (392)
|||||||||||||||.+.|++ .|.+ +.++++++.+++++.. ..+|+||||||||+|.+.. ...++++. .
T Consensus 1 ~il~idn~dsft~nl~~~l~~-~g~~~v~~~~~~~~~~~~~~~-----~~~d~vIlsgGP~~p~~~~---~~~~li~~~~ 71 (534)
T PRK14607 1 MIILIDNYDSFTYNIYQYIGE-LGPEEIEVVRNDEITIEEIEA-----LNPSHIVISPGPGRPEEAG---ISVEVIRHFS 71 (534)
T ss_pred CEEEEECchhHHHHHHHHHHH-cCCCeEEEECCCCCCHHHHHh-----cCCCEEEECCCCCChhhCC---ccHHHHHHhh
Confidence 599999999999999999999 5775 7777777767888755 5699999999999997532 23344443 3
Q ss_pred CCCCEEEEcHHHHHHHHHhCCeeeecCCCceeceeEEEecCCcccccCCCCCCcceEEEeeecceeecCCCCCCcEEEEE
Q 046651 84 WDVPILGVCLGHQALGFVHGADIVHAPEPVHGRLSEIVHNGDRLFHDIPSGQNSGFKVVRYHSLIIDADSLPKELIPIAW 163 (392)
Q Consensus 84 ~~iPILGVCLGhQ~La~a~Gg~V~~apep~hG~~s~i~h~g~~LF~~ips~~~s~f~VvryHSl~V~~~sLP~~l~~iAw 163 (392)
.++||||||+|||+|+.++||+|.+.+.+.||....+.++++.+|.++|.. ++|.+||++.|+..+||++++++|+
T Consensus 72 ~~~PvLGIClG~QlLa~a~Gg~V~~~~~~~~G~~~~v~~~~~~lf~~~~~~----~~v~~~Hs~~v~~~~lp~~~~vlA~ 147 (534)
T PRK14607 72 GKVPILGVCLGHQAIGYAFGGKIVHAKRILHGKTSPIDHNGKGLFRGIPNP----TVATRYHSLVVEEASLPECLEVTAK 147 (534)
T ss_pred cCCCEEEEcHHHHHHHHHcCCeEecCCccccCCceeEEECCCcchhcCCCC----cEEeeccchheecccCCCCeEEEEE
Confidence 489999999999999999999999999999999988888889999999987 8999999999986669999999999
Q ss_pred ecCCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCcccccccccCCcceEEEEEecCCCEEEEeccCCCCCC
Q 046651 164 SNSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGIMHSTRPHYGVQFHPESIAT 243 (392)
Q Consensus 164 t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vmgi~h~~~P~~GVQFHPEsiat 243 (392)
+++ + .+||++|.++|+||||||||+..|
T Consensus 148 s~d--------------~--------------------------------------~i~a~~~~~~pi~GvQFHPE~~~t 175 (534)
T PRK14607 148 SDD--------------G--------------------------------------EIMGIRHKEHPIFGVQFHPESILT 175 (534)
T ss_pred cCC--------------C--------------------------------------CEEEEEECCCCEEEEEeCCCCCCC
Confidence 987 6 899999999999999999999999
Q ss_pred chhHHHHHHHHHHHHH
Q 046651 244 CYGSKILRNFREITED 259 (392)
Q Consensus 244 ~~G~~I~~NF~~l~~~ 259 (392)
++|++||+||++++.+
T Consensus 176 ~~g~~i~~nFl~~~~~ 191 (534)
T PRK14607 176 EEGKRILKNFLNYQRE 191 (534)
T ss_pred hhHHHHHHHHHHHhhc
Confidence 9999999999998753
|
|
| >cd01743 GATase1_Anthranilate_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-37 Score=279.70 Aligned_cols=182 Identities=52% Similarity=0.777 Sum_probs=155.4
Q ss_pred EEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHHcCCC
Q 046651 7 TLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLECWDV 86 (392)
Q Consensus 7 ~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~~~~i 86 (392)
|||||+||+|++++.+.|++ .|+++.++++++.. +++.. + ..+|+|||+||||++.........++.+ ..++
T Consensus 1 il~~~~~~~~~~~~~~~l~~-~G~~~~~~~~~~~~-~~~~~-~---~~~dgvil~gG~~~~~~~~~~~~i~~~~--~~~~ 72 (184)
T cd01743 1 ILLIDNYDSFTYNLVQYLRE-LGAEVVVVRNDEIT-LEELE-L---LNPDAIVISPGPGHPEDAGISLEIIRAL--AGKV 72 (184)
T ss_pred CEEEeCCCccHHHHHHHHHH-cCCceEEEeCCCCC-HHHHh-h---cCCCEEEECCCCCCcccchhHHHHHHHH--hcCC
Confidence 68999999999999999998 79999999998762 32211 1 5799999999999987643222233333 2489
Q ss_pred CEEEEcHHHHHHHHHhCCeeeecCCCceeceeEEEecCCcccccCCCCCCcceEEEeeecceeecCCCCCC--cEEEEEe
Q 046651 87 PILGVCLGHQALGFVHGADIVHAPEPVHGRLSEIVHNGDRLFHDIPSGQNSGFKVVRYHSLIIDADSLPKE--LIPIAWS 164 (392)
Q Consensus 87 PILGVCLGhQ~La~a~Gg~V~~apep~hG~~s~i~h~g~~LF~~ips~~~s~f~VvryHSl~V~~~sLP~~--l~~iAwt 164 (392)
||||||+|||+|+.++||+|.+.+.+.+|....+...++++|+++|.. +.+..+|++.|+. +|.+ ++++|.+
T Consensus 73 PvlGIC~G~Qlla~~~Gg~v~~~~~~~~g~~~~v~~~~~~~~~~~~~~----~~~~~~H~~~v~~--~~~~~~~~~la~~ 146 (184)
T cd01743 73 PILGVCLGHQAIAEAFGGKVVRAPEPMHGKTSEIHHDGSGLFKGLPQP----FTVGRYHSLVVDP--DPLPDLLEVTAST 146 (184)
T ss_pred CEEEECHhHHHHHHHhCCEEEeCCCCCcCceeEEEECCCccccCCCCC----cEEEeCcEEEEec--CCCCceEEEEEeC
Confidence 999999999999999999999999988998778877888999999887 8999999999987 6665 8999998
Q ss_pred cCCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCcccccccccCCcceEEEEEecCCCEEEEeccCCCCCCc
Q 046651 165 NSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGIMHSTRPHYGVQFHPESIATC 244 (392)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vmgi~h~~~P~~GVQFHPEsiat~ 244 (392)
++ + .+||+++.++|+||+|||||+..++
T Consensus 147 ~~--------------~--------------------------------------~v~a~~~~~~~i~gvQfHPE~~~~~ 174 (184)
T cd01743 147 ED--------------G--------------------------------------VIMALRHRDLPIYGVQFHPESILTE 174 (184)
T ss_pred CC--------------C--------------------------------------eEEEEEeCCCCEEEEeeCCCcCCCc
Confidence 77 6 8999999999999999999999999
Q ss_pred hhHHHHHHHH
Q 046651 245 YGSKILRNFR 254 (392)
Q Consensus 245 ~G~~I~~NF~ 254 (392)
+|.+||+||+
T Consensus 175 ~g~~l~~~f~ 184 (184)
T cd01743 175 YGLRLLENFL 184 (184)
T ss_pred chHHHHHhhC
Confidence 9999999994
|
Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase (ASase). This group contains proteins similar to para-aminobenzoate (PABA) synthase and ASase. These enzymes catalyze similar reactions and produce similar products, PABA and ortho-aminobenzoate (anthranilate). Each enzyme is composed of non-identical subunits: a glutamine amidotransferase subunit (component II) and a subunit that produces an aminobenzoate products (component I). ASase catalyses the synthesis of anthranilate from chorismate and glutamine and is a tetrameric protein comprising two copies each of components I and II. Component II of ASase belongs to the family of triad GTases which hydrolyze glutamine and transfer nascent ammonia between the active sites. In some bacteria, such as Escherichia coli, component II can be much larger than in other organisms, due to the prese |
| >PRK00758 GMP synthase subunit A; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-36 Score=277.43 Aligned_cols=183 Identities=32% Similarity=0.526 Sum_probs=156.5
Q ss_pred EEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCc-CEEEECCCCCCCCCCCchhHHHHHHHHcC
Q 046651 6 RTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAF-DNIVISPGPGSPACPEDIGICLRVLLECW 84 (392)
Q Consensus 6 r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~f-DgIVISpGPGsp~~~~d~gi~~~ll~~~~ 84 (392)
||+|||++++|++++.++|++ .|.++.+++++.. .+++. ++ |+|||+||| ++. +.....+++++.
T Consensus 1 ~i~iid~~~~~~~~i~~~l~~-~g~~~~~~~~~~~-~~~l~-------~~~dgivi~Gg~-~~~---~~~~~~~~l~~~- 66 (184)
T PRK00758 1 KIVVVDNGGQYNHLIHRTLRY-LGVDAKIIPNTTP-VEEIK-------AFEDGLILSGGP-DIE---RAGNCPEYLKEL- 66 (184)
T ss_pred CEEEEECCCchHHHHHHHHHH-cCCcEEEEECCCC-HHHHh-------hcCCEEEECCCC-Chh---hccccHHHHHhC-
Confidence 499999999999999999998 6999999998764 56653 36 999999998 222 223344566554
Q ss_pred CCCEEEEcHHHHHHHHHhCCeeeecCCCceeceeEEEecCCcccccCCCCCCcceEEEeeecceeecCCCCCCcEEEEEe
Q 046651 85 DVPILGVCLGHQALGFVHGADIVHAPEPVHGRLSEIVHNGDRLFHDIPSGQNSGFKVVRYHSLIIDADSLPKELIPIAWS 164 (392)
Q Consensus 85 ~iPILGVCLGhQ~La~a~Gg~V~~apep~hG~~s~i~h~g~~LF~~ips~~~s~f~VvryHSl~V~~~sLP~~l~~iAwt 164 (392)
++||||||+|||+|+.++||+|.+.+.+.+|.........+.+|.++|.. +.+.++|++.|.. ||++++++|++
T Consensus 67 ~~PilGIC~G~Q~L~~a~Gg~v~~~~~~~~g~~~i~~~~~~~l~~~~~~~----~~~~~~H~~~v~~--l~~~~~~la~~ 140 (184)
T PRK00758 67 DVPILGICLGHQLIAKAFGGEVGRGEYGEYALVEVEILDEDDILKGLPPE----IRVWASHADEVKE--LPDGFEILARS 140 (184)
T ss_pred CCCEEEEeHHHHHHHHhcCcEEecCCCceeeeEEEEEcCCChhhhCCCCC----cEEEeehhhhhhh--CCCCCEEEEEC
Confidence 89999999999999999999999999889998655445567899999887 9999999999976 99999999999
Q ss_pred cCCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCcccccccccCCcceEEEEEecCCCEEEEeccCCCCCCc
Q 046651 165 NSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGIMHSTRPHYGVQFHPESIATC 244 (392)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vmgi~h~~~P~~GVQFHPEsiat~ 244 (392)
++ + .++|+++.++|+||||||||+..++
T Consensus 141 ~~--------------~--------------------------------------~v~a~~~~~~~~~g~QfHPE~~~~~ 168 (184)
T PRK00758 141 DI--------------C--------------------------------------EVEAMKHKEKPIYGVQFHPEVAHTE 168 (184)
T ss_pred CC--------------C--------------------------------------CEEEEEECCCCEEEEEcCCccCCCc
Confidence 87 6 8999999999999999999998889
Q ss_pred hhHHHHHHHHHHHHHh
Q 046651 245 YGSKILRNFREITEDY 260 (392)
Q Consensus 245 ~G~~I~~NF~~l~~~~ 260 (392)
+|++||+||++++.+|
T Consensus 169 ~g~~l~~~f~~~~~~~ 184 (184)
T PRK00758 169 YGEEIFKNFLEICGKY 184 (184)
T ss_pred hHHHHHHHHHHHHccC
Confidence 9999999999987654
|
|
| >cd01742 GATase1_GMP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-36 Score=272.07 Aligned_cols=181 Identities=28% Similarity=0.394 Sum_probs=154.5
Q ss_pred EEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHHcCCC
Q 046651 7 TLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLECWDV 86 (392)
Q Consensus 7 ~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~~~~i 86 (392)
|+|||++++|++++.++|.+ .|.++++++++.. .++.. + ..+|+|||+|||++++......+. +.+.+. ++
T Consensus 1 i~~iD~g~~~~~~~~~~l~~-~G~~~~~~~~~~~-~~~~~--~---~~~dgvIl~Gg~~~~~~~~~~~~~-~~~~~~-~~ 71 (181)
T cd01742 1 ILILDFGSQYTHLIARRVRE-LGVYSEILPNTTP-LEEIK--L---KNPKGIILSGGPSSVYEEDAPRVD-PEIFEL-GV 71 (181)
T ss_pred CEEEECCCchHHHHHHHHHh-cCceEEEecCCCC-hhhhc--c---cCCCEEEECCCcccccccccchhh-HHHHhc-CC
Confidence 58999999999999999999 6999999998874 33222 1 679999999999988754323333 333333 99
Q ss_pred CEEEEcHHHHHHHHHhCCeeeecCCCceeceeEEEecCCcccccCCCCCCcceEEEeeecceeecCCCCCCcEEEEEecC
Q 046651 87 PILGVCLGHQALGFVHGADIVHAPEPVHGRLSEIVHNGDRLFHDIPSGQNSGFKVVRYHSLIIDADSLPKELIPIAWSNS 166 (392)
Q Consensus 87 PILGVCLGhQ~La~a~Gg~V~~apep~hG~~s~i~h~g~~LF~~ips~~~s~f~VvryHSl~V~~~sLP~~l~~iAwt~~ 166 (392)
|+||||+|||+|+.++||+|.+.+.+.+|........+++||.++|.. +++..+|++.|.. +|++++++|++++
T Consensus 72 PilGIC~G~Qll~~~~gg~v~~~~~~~~G~~~v~~~~~~~l~~~~~~~----~~~~~~H~~~v~~--l~~~~~~la~~~~ 145 (181)
T cd01742 72 PVLGICYGMQLIAKALGGKVERGDKREYGKAEIEIDDSSPLFEGLPDE----QTVWMSHGDEVVK--LPEGFKVIASSDN 145 (181)
T ss_pred CEEEEcHHHHHHHHhcCCeEEeCCCCcceEEEEEecCCChhhcCCCCc----eEEEcchhhhhhh--cCCCcEEEEeCCC
Confidence 999999999999999999999999999998766455678899999987 9999999999977 9999999999887
Q ss_pred CCCccccccCCCCCCCcccccchhhhhhcccccccccCCCcccccccccCCcceEEEEEecCCCEEEEeccCCCCCCchh
Q 046651 167 ADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGIMHSTRPHYGVQFHPESIATCYG 246 (392)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vmgi~h~~~P~~GVQFHPEsiat~~G 246 (392)
+ .++|+++.+.++||+|||||+..+++|
T Consensus 146 --------------~--------------------------------------~i~a~~~~~~~~~g~QfHPE~~~~~~g 173 (181)
T cd01742 146 --------------C--------------------------------------PVAAIANEEKKIYGVQFHPEVTHTEKG 173 (181)
T ss_pred --------------C--------------------------------------CEEEEEeCCCcEEEEEcCCccccCcCh
Confidence 6 899999998899999999999988899
Q ss_pred HHHHHHHH
Q 046651 247 SKILRNFR 254 (392)
Q Consensus 247 ~~I~~NF~ 254 (392)
++||+||+
T Consensus 174 ~~ll~~f~ 181 (181)
T cd01742 174 KEILKNFL 181 (181)
T ss_pred HHHHHhhC
Confidence 99999994
|
Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. GMP synthetase is a glutamine amidotransferase from the de novo purine biosynthetic pathway. Glutamine amidotransferase (GATase) activity catalyse the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. GMP synthetase catalyses the amination of the nucleotide precursor xanthosine 5'-monophospahte to form GMP. GMP synthetase belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site. |
| >TIGR00888 guaA_Nterm GMP synthase (glutamine-hydrolyzing), N-terminal domain or A subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-35 Score=269.84 Aligned_cols=182 Identities=29% Similarity=0.433 Sum_probs=156.4
Q ss_pred EEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHHcCCC
Q 046651 7 TLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLECWDV 86 (392)
Q Consensus 7 ~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~~~~i 86 (392)
|+|||++++|+++|.+.|++ .|+++++++++.. .+++.. -++|+|||+|||+++++.....+...++ + .++
T Consensus 1 i~iiD~g~~~~~~l~~~l~~-~g~~~~~~~~~~~-~~~~~~-----~~~~glii~Gg~~~~~~~~~~~~i~~~~-~-~~~ 71 (188)
T TIGR00888 1 ILVLDFGSQYTQLIARRLRE-LGVYSELVPNTTP-LEEIRE-----KNPKGIILSGGPSSVYAENAPRADEKIF-E-LGV 71 (188)
T ss_pred CEEEECCchHHHHHHHHHHH-cCCEEEEEeCCCC-HHHHhh-----cCCCEEEECCCCCCcCcCCchHHHHHHH-h-CCC
Confidence 58999999999999999998 6999999998874 566644 2367999999999988754444443333 2 489
Q ss_pred CEEEEcHHHHHHHHHhCCeeeecCCCceeceeEEEecCCcccccCCCCCCcceEEEeeecceeecCCCCCCcEEEEEecC
Q 046651 87 PILGVCLGHQALGFVHGADIVHAPEPVHGRLSEIVHNGDRLFHDIPSGQNSGFKVVRYHSLIIDADSLPKELIPIAWSNS 166 (392)
Q Consensus 87 PILGVCLGhQ~La~a~Gg~V~~apep~hG~~s~i~h~g~~LF~~ips~~~s~f~VvryHSl~V~~~sLP~~l~~iAwt~~ 166 (392)
||||||+|||+|+.++||+|.+.+.+.+|+........++||.++|.. +++..+|++.+.. ||++++++|++++
T Consensus 72 PilGIC~G~Qll~~~lgg~v~~~~~~~~g~~~v~~~~~~~l~~~~~~~----~~~~~~H~~~v~~--l~~~~~vla~~~~ 145 (188)
T TIGR00888 72 PVLGICYGMQLMAKQLGGEVGRAEKREYGKAELEILDEDDLFRGLPDE----STVWMSHGDKVKE--LPEGFKVLATSDN 145 (188)
T ss_pred CEEEECHHHHHHHHhcCceEecCCCccceeEEEEEecCCHhhcCCCCC----cEEEeEccceeec--CCCCCEEEEECCC
Confidence 999999999999999999999999999998765445567899999876 9999999999976 9999999999877
Q ss_pred CCCccccccCCCCCCCcccccchhhhhhcccccccccCCCcccccccccCCcceEEEEEecCCCEEEEeccCCCCCCchh
Q 046651 167 ADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGIMHSTRPHYGVQFHPESIATCYG 246 (392)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vmgi~h~~~P~~GVQFHPEsiat~~G 246 (392)
+ .++|+++.+.|+||+|||||+..+.+|
T Consensus 146 --------------~--------------------------------------~v~a~~~~~~~~~g~QfHPE~~~~~~g 173 (188)
T TIGR00888 146 --------------C--------------------------------------PVAAMAHEEKPIYGVQFHPEVTHTEYG 173 (188)
T ss_pred --------------C--------------------------------------CeEEEEECCCCEEEEeeCCccCCChhh
Confidence 5 899999998899999999999888899
Q ss_pred HHHHHHHHH
Q 046651 247 SKILRNFRE 255 (392)
Q Consensus 247 ~~I~~NF~~ 255 (392)
++||+||++
T Consensus 174 ~~i~~~f~~ 182 (188)
T TIGR00888 174 NELLENFVY 182 (188)
T ss_pred HHHHHHHHH
Confidence 999999987
|
separate polypeptide chains in most of the Archaea. This N-terminal region would be the smaller subunit. |
| >PF00117 GATase: Glutamine amidotransferase class-I; InterPro: IPR017926 Glutamine amidotransferase (GATase) enzymes catalyse the removal of the ammonia group from glutamine and then transfer this group to a substrate to form a new carbon-nitrogen group [] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=270.56 Aligned_cols=185 Identities=38% Similarity=0.617 Sum_probs=158.5
Q ss_pred EEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHHc--CC
Q 046651 8 LLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLEC--WD 85 (392)
Q Consensus 8 LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~~--~~ 85 (392)
||||+||||+++|.+.+.+ .|.++++++++.. .++....+ ..||+|||||||++++. +.....+++++ .+
T Consensus 1 lviD~~~~~~~~l~~~l~~-~~~~~~v~~~~~~-~~~~~~~~---~~~d~iii~Gg~~~~~d---~~~~~~~i~~~~~~~ 72 (192)
T PF00117_consen 1 LVIDNGDSFTHSLVRALRE-LGIDVEVVRVDSD-FEEPLEDL---DDYDGIIISGGPGSPYD---IEGLIELIREARERK 72 (192)
T ss_dssp EEEESSHTTHHHHHHHHHH-TTEEEEEEETTGG-HHHHHHHT---TTSSEEEEECESSSTTS---HHHHHHHHHHHHHTT
T ss_pred CEEeCCHHHHHHHHHHHHH-CCCeEEEEECCCc-hhhhhhhh---cCCCEEEECCcCCcccc---ccccccccccccccc
Confidence 7999999999999999999 6999999998873 44432112 78999999999999986 55555555552 49
Q ss_pred CCEEEEcHHHHHHHHHhCCeeeecC-CCceeceeEEEecCC-cccccCCCCCCcceEEEeeecceeec-CCCCCCcEEEE
Q 046651 86 VPILGVCLGHQALGFVHGADIVHAP-EPVHGRLSEIVHNGD-RLFHDIPSGQNSGFKVVRYHSLIIDA-DSLPKELIPIA 162 (392)
Q Consensus 86 iPILGVCLGhQ~La~a~Gg~V~~ap-ep~hG~~s~i~h~g~-~LF~~ips~~~s~f~VvryHSl~V~~-~sLP~~l~~iA 162 (392)
+||||||+|||+|+.++|++|.+.+ .+.+|....+..++. ++|.++|.. |.+.++|++.|.+ +.+|++++++|
T Consensus 73 ~PilGIC~G~Q~la~~~G~~v~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~----~~~~~~H~~~v~~~~~~p~~~~~la 148 (192)
T PF00117_consen 73 IPILGICLGHQILAHALGGKVVPSPEKPHHGGNIPISETPEDPLFYGLPES----FKAYQYHSDAVNPDDLLPEGFEVLA 148 (192)
T ss_dssp SEEEEETHHHHHHHHHTTHEEEEEESEEEEEEEEEEEEEEEHGGGTTSTSE----EEEEEEECEEEEEGHHHHTTEEEEE
T ss_pred eEEEEEeehhhhhHHhcCCcccccccccccccccccccccccccccccccc----cccccccceeeeccccccccccccc
Confidence 9999999999999999999999988 788998888777554 999999987 9999999999986 23789999999
Q ss_pred EecCCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCcccccccccCCcceEEEEEecCCCEEEEeccCCCCC
Q 046651 163 WSNSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGIMHSTRPHYGVQFHPESIA 242 (392)
Q Consensus 163 wt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vmgi~h~~~P~~GVQFHPEsia 242 (392)
++++. + .++++.+.+.|+||+|||||+..
T Consensus 149 ~s~~~-------------~--------------------------------------~~~~~~~~~~~i~g~QfHPE~~~ 177 (192)
T PF00117_consen 149 SSSDG-------------C--------------------------------------PIQAIRHKDNPIYGVQFHPEFSS 177 (192)
T ss_dssp EETTT-------------T--------------------------------------EEEEEEECTTSEEEESSBTTSTT
T ss_pred ccccc-------------c--------------------------------------ccccccccccEEEEEecCCcCCC
Confidence 99761 3 69999999999999999999999
Q ss_pred CchhHHHHHHHHH
Q 046651 243 TCYGSKILRNFRE 255 (392)
Q Consensus 243 t~~G~~I~~NF~~ 255 (392)
+..|..|++||+-
T Consensus 178 ~~~~~~~l~nf~~ 190 (192)
T PF00117_consen 178 SPGGPQLLKNFFL 190 (192)
T ss_dssp STTHHHHHHHHHH
T ss_pred CCCcchhhhheeE
Confidence 9999999999973
|
The GATase domain exists either as a separate polypeptidic subunit or as part of a larger polypeptide fused in different ways to a synthase domain. Two classes of GATase domains have been identified [, ]: class-I (also known as trpG-type or triad) and class-II (also known as purF-type or Ntn). Class-I (or type 1) GATase domains have been found in the following enzymes: The second component of anthranilate synthase (AS) []. AS catalyzes the biosynthesis of anthranilate from chorismate and glutamine. AS is generally a dimeric enzyme: the first component can synthesize anthranilate using ammonia rather than glutamine, whereas component II provides the GATase activity []. In some bacteria and in fungi the GATase component of AS is part of a multifunctional protein that also catalyzes other steps of the biosynthesis of tryptophan. The second component of 4-amino-4-deoxychorismate (ADC) synthase, a dimeric prokaryotic enzyme that functions in the pathway that catalyzes the biosynthesis of para-aminobenzoate (PABA) from chorismate and glutamine. The second component (gene pabA) provides the GATase activity []. CTP synthase. CTP synthase catalyzes the final reaction in the biosynthesis of pyrimidine, the ATP-dependent formation of CTP from UTP and glutamine. CTP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the C-terminal section []. GMP synthase (glutamine-hydrolyzing). GMP synthase catalyzes the ATP-dependent formation of GMP from xanthosine 5'-phosphate and glutamine. GMP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the N-terminal section [, ]. Glutamine-dependent carbamoyl-phosphate synthase (GD-CPSase); an enzyme involved in both arginine and pyrimidine biosynthesis and which catalyzes the ATP-dependent formation of carbamoyl phosphate from glutamine and carbon dioxide. In bacteria GD-CPSase is composed of two subunits: the large chain (gene carB) provides the CPSase activity, while the small chain (gene carA) provides the GATase activity. In yeast the enzyme involved in arginine biosynthesis is also composed of two subunits: CPA1 (GATase), and CPA2 (CPSase). In most eukaryotes, the first three steps of pyrimidine biosynthesis are catalyzed by a large multifunctional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals). The GATase domain is located at the N-terminal extremity of this polyprotein []. Phosphoribosylformylglycinamidine synthase, an enzyme that catalyzes the fourth step in the de novo biosynthesis of purines. In some species of bacteria and rchaea, FGAM synthase II is composed of two subunits: a small chain (gene purQ) which provides the GATase activity and a large chain (gene purL) which provides the aminator activity. In eukaryotes and Gram-negative bacteria a single polypeptide (large type of purL) contains a FGAM synthethase domain and the GATase as the C-terminal domain []. Imidazole glycerol phosphate synthase subunit hisH, an enzyme that catalyzes the fifth step in the biosynthesis of histidine. A triad of conserved Cys-His-Glu forms the active site, wherein the catalytic cysteine is essential for the amidotransferase activity [, ]. Different structures show that the active site Cys of type 1 GATase is located at the tip of a nucleophile elbow.; PDB: 1I7S_D 1I7Q_D 3UOW_B 1GPM_C 1O1Y_A 2VXO_A 2VPI_B 1OX5_B 1OX6_B 1OX4_B .... |
| >TIGR01815 TrpE-clade3 anthranilate synthase, alpha proteobacterial clade | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-35 Score=314.90 Aligned_cols=191 Identities=37% Similarity=0.524 Sum_probs=161.1
Q ss_pred CccEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHH
Q 046651 3 EFVRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLE 82 (392)
Q Consensus 3 ~~~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~ 82 (392)
..+||||||++|+|+++|.++|.+ .|+++.+++++.. +++. +...+|+||||||||+|.+.....++.+++
T Consensus 515 ~~~~IlVID~gds~~~~l~~~L~~-~G~~v~vv~~~~~--~~~~----~~~~~DgLILsgGPGsp~d~~~~~~I~~~~-- 585 (717)
T TIGR01815 515 EGRRILLVDHEDSFVHTLANYLRQ-TGASVTTLRHSHA--EAAF----DERRPDLVVLSPGPGRPADFDVAGTIDAAL-- 585 (717)
T ss_pred CCCEEEEEECCChhHHHHHHHHHH-CCCeEEEEECCCC--hhhh----hhcCCCEEEEcCCCCCchhcccHHHHHHHH--
Confidence 458999999999999999999998 7999999988753 2322 125699999999999997543333333333
Q ss_pred cCCCCEEEEcHHHHHHHHHhCCeeeecCCCceeceeEEEe-cCCcccccCCCCCCcceEEEeeecceeecCCCCCCcEEE
Q 046651 83 CWDVPILGVCLGHQALGFVHGADIVHAPEPVHGRLSEIVH-NGDRLFHDIPSGQNSGFKVVRYHSLIIDADSLPKELIPI 161 (392)
Q Consensus 83 ~~~iPILGVCLGhQ~La~a~Gg~V~~apep~hG~~s~i~h-~g~~LF~~ips~~~s~f~VvryHSl~V~~~sLP~~l~~i 161 (392)
..++||||||+|||+|+.++||+|.+.+.|+||+.+.|.. ..++||.++|.. |.|.+|||+.++..+||++++++
T Consensus 586 ~~~iPvLGICLG~QlLa~a~GG~V~~~~~p~~G~~~~V~~~~~~~Lf~~lp~~----~~v~~~HS~~~~~~~LP~~~~vl 661 (717)
T TIGR01815 586 ARGLPVFGVCLGLQGMVEAFGGALDVLPEPVHGKASRIRVLGPDALFAGLPER----LTVGRYHSLFARRDRLPAELTVT 661 (717)
T ss_pred HCCCCEEEECHHHHHHhhhhCCEEEECCCCeeCcceEEEECCCChhhhcCCCC----CEEEEECCCCcccccCCCCeEEE
Confidence 2499999999999999999999999999999998776654 456899999988 99999999988766699999999
Q ss_pred EEecCCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCcccccccccCCcceEEEEEecCCCEEEEeccCCCC
Q 046651 162 AWSNSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGIMHSTRPHYGVQFHPESI 241 (392)
Q Consensus 162 Awt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vmgi~h~~~P~~GVQFHPEsi 241 (392)
|++++ + .+|||+|.+.|+||||||||++
T Consensus 662 A~s~d--------------~--------------------------------------~v~Ai~~~~~~i~GVQFHPEsi 689 (717)
T TIGR01815 662 AESAD--------------G--------------------------------------LIMAIEHRRLPLAAVQFHPESI 689 (717)
T ss_pred EEeCC--------------C--------------------------------------cEEEEEECCCCEEEEEeCCeeC
Confidence 99977 6 8999999999999999999998
Q ss_pred CCc---hhHHHHHHHHHHHH
Q 046651 242 ATC---YGSKILRNFREITE 258 (392)
Q Consensus 242 at~---~G~~I~~NF~~l~~ 258 (392)
.|. .|.+||+||+..+.
T Consensus 690 ~T~sg~~G~~ilkNfl~~~~ 709 (717)
T TIGR01815 690 MTLDGGAGLAMIGNVVDRLA 709 (717)
T ss_pred CccCchhHHHHHHHHHHHHh
Confidence 775 48999999997764
|
This model represents a small clade of anthranilate synthases from alpha proteobacteria and Nostoc (a cyanobacterium). This enzyme is the first step in the pathway for the biosynthesis of tryprophan from chorismate. |
| >PLN02347 GMP synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-34 Score=301.71 Aligned_cols=191 Identities=25% Similarity=0.329 Sum_probs=162.8
Q ss_pred cEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHH--
Q 046651 5 VRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLE-- 82 (392)
Q Consensus 5 ~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~-- 82 (392)
-+|+|||++++||++|.+.|++ .|+.+++++++. +.+++.. ..+|+|||||||++++......+...+++.
T Consensus 11 ~~IlIID~G~~~t~~I~r~lre-lgv~~~v~p~~~-~~~~i~~-----~~~dgIILsGGP~sv~~~~~p~~~~~i~~~~~ 83 (536)
T PLN02347 11 DVVLILDYGSQYTHLITRRVRE-LGVYSLLLSGTA-SLDRIAS-----LNPRVVILSGGPHSVHVEGAPTVPEGFFDYCR 83 (536)
T ss_pred CEEEEEECCCcHHHHHHHHHHH-CCCeEEEEECCC-CHHHHhc-----CCCCEEEECCCCCcccccCCchhhHHHHHHHH
Confidence 4799999999999999999999 699999999985 4788754 469999999999999764332233333332
Q ss_pred cCCCCEEEEcHHHHHHHHHhCCeeeecCCCceeceeEEEecCCcccccCCCCCCcceEEEeeecceeecCCCCCCcEEEE
Q 046651 83 CWDVPILGVCLGHQALGFVHGADIVHAPEPVHGRLSEIVHNGDRLFHDIPSGQNSGFKVVRYHSLIIDADSLPKELIPIA 162 (392)
Q Consensus 83 ~~~iPILGVCLGhQ~La~a~Gg~V~~apep~hG~~s~i~h~g~~LF~~ips~~~s~f~VvryHSl~V~~~sLP~~l~~iA 162 (392)
..++||||||+|||+|+.++||+|.+.+.+.+|+.....+.+++||+++|+.. .+.|+++|++.|.. ||+++.++|
T Consensus 84 ~~~iPILGIClG~QlLa~alGG~V~~~~~~e~G~~~v~i~~~~~Lf~~l~~~~--~~~v~~~Hsd~V~~--lP~g~~vlA 159 (536)
T PLN02347 84 ERGVPVLGICYGMQLIVQKLGGEVKPGEKQEYGRMEIRVVCGSQLFGDLPSGE--TQTVWMSHGDEAVK--LPEGFEVVA 159 (536)
T ss_pred hcCCcEEEECHHHHHHHHHcCCEEEecCCcccceEEEEEcCCChhhhcCCCCc--eEEEEEEEEEEeee--CCCCCEEEE
Confidence 23899999999999999999999999988899998755567889999998751 26899999999977 999999999
Q ss_pred EecCCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCcccccccccCCcceEEEEEecCCCEEEEeccCCCCC
Q 046651 163 WSNSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGIMHSTRPHYGVQFHPESIA 242 (392)
Q Consensus 163 wt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vmgi~h~~~P~~GVQFHPEsia 242 (392)
++++ + .+||++|.++|+||||||||+..
T Consensus 160 ~s~~--------------~--------------------------------------~iaai~~~~~~i~GvQFHPE~~~ 187 (536)
T PLN02347 160 KSVQ--------------G--------------------------------------AVVAIENRERRIYGLQYHPEVTH 187 (536)
T ss_pred EeCC--------------C--------------------------------------cEEEEEECCCCEEEEEccCCCCc
Confidence 9988 6 78999999999999999999999
Q ss_pred CchhHHHHHHHH-HHHH
Q 046651 243 TCYGSKILRNFR-EITE 258 (392)
Q Consensus 243 t~~G~~I~~NF~-~l~~ 258 (392)
|++|.+||+||+ ++|.
T Consensus 188 t~~G~~iL~NFl~~ic~ 204 (536)
T PLN02347 188 SPKGMETLRHFLFDVCG 204 (536)
T ss_pred cchHHHHHHHHHHHHhC
Confidence 999999999997 6663
|
|
| >PRK13566 anthranilate synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-34 Score=311.57 Aligned_cols=189 Identities=37% Similarity=0.551 Sum_probs=162.6
Q ss_pred CccEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHH
Q 046651 3 EFVRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLE 82 (392)
Q Consensus 3 ~~~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~ 82 (392)
..||||||||+|+|+++|.++|+. .|+++++++++.. .+.+.. .++|+||||||||+|.... +.++++.
T Consensus 525 ~g~~IlvID~~dsf~~~l~~~Lr~-~G~~v~vv~~~~~-~~~~~~-----~~~DgVVLsgGpgsp~d~~----~~~lI~~ 593 (720)
T PRK13566 525 EGKRVLLVDHEDSFVHTLANYFRQ-TGAEVTTVRYGFA-EEMLDR-----VNPDLVVLSPGPGRPSDFD----CKATIDA 593 (720)
T ss_pred CCCEEEEEECCCchHHHHHHHHHH-CCCEEEEEECCCC-hhHhhh-----cCCCEEEECCCCCChhhCC----cHHHHHH
Confidence 458999999999999999999998 6999999999874 333322 5799999999999986432 2344443
Q ss_pred --cCCCCEEEEcHHHHHHHHHhCCeeeecCCCceeceeEEEec-CCcccccCCCCCCcceEEEeeecceeecCCCCCCcE
Q 046651 83 --CWDVPILGVCLGHQALGFVHGADIVHAPEPVHGRLSEIVHN-GDRLFHDIPSGQNSGFKVVRYHSLIIDADSLPKELI 159 (392)
Q Consensus 83 --~~~iPILGVCLGhQ~La~a~Gg~V~~apep~hG~~s~i~h~-g~~LF~~ips~~~s~f~VvryHSl~V~~~sLP~~l~ 159 (392)
..++||||||+|||+|+.++||+|.+.+.+.||....|... .+.||+++|.. |.+.+||++.++...||++++
T Consensus 594 a~~~~iPILGIClG~QlLa~alGG~V~~~~~~~~G~~~~V~v~~~~~Lf~~lp~~----~~v~~~Hs~~v~~~~Lp~~~~ 669 (720)
T PRK13566 594 ALARNLPIFGVCLGLQAIVEAFGGELGQLAYPMHGKPSRIRVRGPGRLFSGLPEE----FTVGRYHSLFADPETLPDELL 669 (720)
T ss_pred HHHCCCcEEEEehhHHHHHHHcCCEEEECCCCccCCceEEEECCCCchhhcCCCC----CEEEEecceeEeeccCCCceE
Confidence 24899999999999999999999999999999988777654 45899999987 999999999988767999999
Q ss_pred EEEEecCCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCcccccccccCCcceEEEEEecCCCEEEEeccCC
Q 046651 160 PIAWSNSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGIMHSTRPHYGVQFHPE 239 (392)
Q Consensus 160 ~iAwt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vmgi~h~~~P~~GVQFHPE 239 (392)
++|++++ + .||||+|.+.|+||||||||
T Consensus 670 vlA~s~d--------------g--------------------------------------~V~ai~~~~~pi~GVQFHPE 697 (720)
T PRK13566 670 VTAETED--------------G--------------------------------------VIMAIEHKTLPVAAVQFHPE 697 (720)
T ss_pred EEEEeCC--------------C--------------------------------------cEEEEEECCCCEEEEeccCe
Confidence 9999987 6 89999999999999999999
Q ss_pred CCCC---chhHHHHHHHHHHHH
Q 046651 240 SIAT---CYGSKILRNFREITE 258 (392)
Q Consensus 240 siat---~~G~~I~~NF~~l~~ 258 (392)
++.| ..|.+||+||++++.
T Consensus 698 ~i~t~~~~~G~~ii~nfl~~~~ 719 (720)
T PRK13566 698 SIMTLGGDVGLRIIENVVRLLA 719 (720)
T ss_pred eCCcCCchhHHHHHHHHHHHhh
Confidence 9987 569999999998763
|
|
| >PRK00074 guaA GMP synthase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-32 Score=281.56 Aligned_cols=186 Identities=30% Similarity=0.387 Sum_probs=160.4
Q ss_pred cEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHHcC
Q 046651 5 VRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLECW 84 (392)
Q Consensus 5 ~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~~~ 84 (392)
.+|+|||++++||..|.+.|++ .|+.+++++++.. .+++.. ..+|+|||||||.+++......+... +.+.
T Consensus 4 ~~i~vlD~Gsq~~~li~r~lre-lg~~~~v~p~~~~-~~~l~~-----~~~dgIIlsGGp~sv~~~~~p~~~~~-i~~~- 74 (511)
T PRK00074 4 DKILILDFGSQYTQLIARRVRE-LGVYSEIVPYDIS-AEEIRA-----FNPKGIILSGGPASVYEEGAPRADPE-IFEL- 74 (511)
T ss_pred CEEEEEECCCCcHHHHHHHHHH-CCCeEEEEECCCC-HHHHhc-----cCCCEEEECCCCcccccCCCccccHH-HHhC-
Confidence 4799999999999999999999 7999999988764 677654 35799999999998876433333233 3333
Q ss_pred CCCEEEEcHHHHHHHHHhCCeeeecCCCceeceeEEEecCCcccccCCCCCCcceEEEeeecceeecCCCCCCcEEEEEe
Q 046651 85 DVPILGVCLGHQALGFVHGADIVHAPEPVHGRLSEIVHNGDRLFHDIPSGQNSGFKVVRYHSLIIDADSLPKELIPIAWS 164 (392)
Q Consensus 85 ~iPILGVCLGhQ~La~a~Gg~V~~apep~hG~~s~i~h~g~~LF~~ips~~~s~f~VvryHSl~V~~~sLP~~l~~iAwt 164 (392)
++||||||+|||+|+.++||+|.+.+.+++|+......++++||.+++.. +.|+.+|++.|.. +|++++++|.+
T Consensus 75 ~~PvLGIC~G~QlLa~~lGG~V~~~~~~e~G~~~i~i~~~~~Lf~~l~~~----~~v~~~H~d~V~~--lp~g~~vlA~s 148 (511)
T PRK00074 75 GVPVLGICYGMQLMAHQLGGKVERAGKREYGRAELEVDNDSPLFKGLPEE----QDVWMSHGDKVTE--LPEGFKVIAST 148 (511)
T ss_pred CCCEEEECHHHHHHHHHhCCeEEecCCcccceEEEEEcCCChhhhcCCCc----eEEEEECCeEEEe--cCCCcEEEEEe
Confidence 89999999999999999999999998889997765445677899999887 8999999999987 99999999999
Q ss_pred cCCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCcccccccccCCcceEEEEEecCCCEEEEeccCCCCCCc
Q 046651 165 NSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGIMHSTRPHYGVQFHPESIATC 244 (392)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vmgi~h~~~P~~GVQFHPEsiat~ 244 (392)
++ + .++|+++.+.++||+|||||+..|+
T Consensus 149 ~~--------------~--------------------------------------~v~ai~~~~~~i~GvQFHPE~~~t~ 176 (511)
T PRK00074 149 EN--------------C--------------------------------------PIAAIANEERKFYGVQFHPEVTHTP 176 (511)
T ss_pred CC--------------C--------------------------------------CEEEEEeCCCCEEEEeCCCCcCCch
Confidence 87 6 8999999999999999999999999
Q ss_pred hhHHHHHHHH-HHH
Q 046651 245 YGSKILRNFR-EIT 257 (392)
Q Consensus 245 ~G~~I~~NF~-~l~ 257 (392)
.|.+||+||+ ++|
T Consensus 177 ~G~~il~nFl~~i~ 190 (511)
T PRK00074 177 QGKKLLENFVFDIC 190 (511)
T ss_pred hHHHHHHHHHHHhc
Confidence 9999999999 676
|
|
| >PRK12564 carbamoyl phosphate synthase small subunit; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-31 Score=270.09 Aligned_cols=179 Identities=27% Similarity=0.408 Sum_probs=148.1
Q ss_pred ccEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHHc
Q 046651 4 FVRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLEC 83 (392)
Q Consensus 4 ~~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~~ 83 (392)
..||++||+ +.++|+++.|.+ .|..+++++++. +.+++.. ..+|+||||||||+|... ....+++++.
T Consensus 177 ~~~I~viD~--G~k~nivr~L~~-~G~~v~vvp~~~-~~~~i~~-----~~~DGIvLSgGPgdp~~~---~~~~~~i~~~ 244 (360)
T PRK12564 177 KYKVVAIDF--GVKRNILRELAE-RGCRVTVVPATT-TAEEILA-----LNPDGVFLSNGPGDPAAL---DYAIEMIREL 244 (360)
T ss_pred CCEEEEEeC--CcHHHHHHHHHH-CCCEEEEEeCCC-CHHHHHh-----cCCCEEEEeCCCCChHHH---HHHHHHHHHH
Confidence 479999998 478999999998 799999999986 4677654 469999999999998643 3334444441
Q ss_pred --CCCCEEEEcHHHHHHHHHhCCeeeecCCCceeceeEEEecCCcccccCCCCCCcceEEEeeecceeecCCCCCCcEEE
Q 046651 84 --WDVPILGVCLGHQALGFVHGADIVHAPEPVHGRLSEIVHNGDRLFHDIPSGQNSGFKVVRYHSLIIDADSLPKELIPI 161 (392)
Q Consensus 84 --~~iPILGVCLGhQ~La~a~Gg~V~~apep~hG~~s~i~h~g~~LF~~ips~~~s~f~VvryHSl~V~~~sLP~~l~~i 161 (392)
.++||||||+|||+|+.++||++.+++.+.||....+.... .++ .+.+.+||++.|++++||++++++
T Consensus 245 ~~~~~PilGIClG~QlLa~a~Gg~v~kl~~gh~G~~~pv~~~~--------~~~--~~its~~H~~~V~~~~lp~~l~v~ 314 (360)
T PRK12564 245 LEKKIPIFGICLGHQLLALALGAKTYKMKFGHRGANHPVKDLE--------TGK--VEITSQNHGFAVDEDSLPANLEVT 314 (360)
T ss_pred HHcCCeEEEECHHHHHHHHHhCCcEeccCCCccCCceeeEECC--------CCc--EEEEecCcccEEcccccCCceEEE
Confidence 38999999999999999999999999988999877765432 111 155678999999877799999999
Q ss_pred EEec-CCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCcccccccccCCcceEEEEEecCCCEEEEeccCCC
Q 046651 162 AWSN-SADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGIMHSTRPHYGVQFHPES 240 (392)
Q Consensus 162 Awt~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vmgi~h~~~P~~GVQFHPEs 240 (392)
|++. + + .+|||+|.++|+||||||||+
T Consensus 315 a~~~~D--------------g--------------------------------------~iegi~~~~~pi~gVQfHPE~ 342 (360)
T PRK12564 315 HVNLND--------------G--------------------------------------TVEGLRHKDLPAFSVQYHPEA 342 (360)
T ss_pred EEeCCC--------------C--------------------------------------cEEEEEECCCCEEEEEeCCcC
Confidence 9984 4 5 899999999999999999999
Q ss_pred CCCch-hHHHHHHHHHH
Q 046651 241 IATCY-GSKILRNFREI 256 (392)
Q Consensus 241 iat~~-G~~I~~NF~~l 256 (392)
..++. ++.||++|+++
T Consensus 343 ~~gp~d~~~lF~~F~~~ 359 (360)
T PRK12564 343 SPGPHDSAYLFDEFVEL 359 (360)
T ss_pred CCCCCCHHHHHHHHHHh
Confidence 88765 88999999986
|
|
| >cd01744 GATase1_CPSase Small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-31 Score=244.45 Aligned_cols=174 Identities=28% Similarity=0.382 Sum_probs=139.4
Q ss_pred EEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHH--cC
Q 046651 7 TLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLE--CW 84 (392)
Q Consensus 7 ~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~--~~ 84 (392)
++|||++.. ||++++|.. .|..+++++++.. .+++.. ..+|+|||+|||++|... ....+++++ ..
T Consensus 1 i~i~d~g~~--~~~~~~l~~-~G~~~~~~~~~~~-~~~~~~-----~~~dgiil~GG~~~~~~~---~~~~~~~~~~~~~ 68 (178)
T cd01744 1 VVVIDFGVK--HNILRELLK-RGCEVTVVPYNTD-AEEILK-----LDPDGIFLSNGPGDPALL---DEAIKTVRKLLGK 68 (178)
T ss_pred CEEEecCcH--HHHHHHHHH-CCCeEEEEECCCC-HHHHhh-----cCCCEEEECCCCCChhHh---HHHHHHHHHHHhC
Confidence 589999766 588999988 7999999999864 555433 579999999999988642 334444544 23
Q ss_pred CCCEEEEcHHHHHHHHHhCCeeeecCCCceeceeEEEecCCcccccCCCCCCcceEEEeeecceeecCCCCCCcEEEEEe
Q 046651 85 DVPILGVCLGHQALGFVHGADIVHAPEPVHGRLSEIVHNGDRLFHDIPSGQNSGFKVVRYHSLIIDADSLPKELIPIAWS 164 (392)
Q Consensus 85 ~iPILGVCLGhQ~La~a~Gg~V~~apep~hG~~s~i~h~g~~LF~~ips~~~s~f~VvryHSl~V~~~sLP~~l~~iAwt 164 (392)
++||||||+|||+|+.++||+|...+.+.+|....+.... .++ .+.+.+||++.|+.+++|++++++|++
T Consensus 69 ~~PvlGIC~G~Q~l~~~~Gg~v~~~~~~~~g~~~~v~~~~--------~~~--~~~v~~~H~~~v~~~~lp~~~~v~a~s 138 (178)
T cd01744 69 KIPIFGICLGHQLLALALGAKTYKMKFGHRGSNHPVKDLI--------TGR--VYITSQNHGYAVDPDSLPGGLEVTHVN 138 (178)
T ss_pred CCCEEEECHHHHHHHHHcCCceecCCCCCCCCceeeEEcC--------CCC--cEEEEcCceEEEcccccCCceEEEEEE
Confidence 7999999999999999999999998877788766554432 111 167789999999876699999999998
Q ss_pred c-CCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCcccccccccCCcceEEEEEecCCCEEEEeccCCCCCC
Q 046651 165 N-SADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGIMHSTRPHYGVQFHPESIAT 243 (392)
Q Consensus 165 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vmgi~h~~~P~~GVQFHPEsiat 243 (392)
. + + .+||++|.++|+||||||||+..+
T Consensus 139 ~~~--------------~--------------------------------------~i~a~~~~~~~i~GvQfHPE~~~~ 166 (178)
T cd01744 139 LND--------------G--------------------------------------TVEGIRHKDLPVFSVQFHPEASPG 166 (178)
T ss_pred CCC--------------C--------------------------------------cEEEEEECCCCeEEEeeCCCCCCC
Confidence 4 4 5 899999999999999999999876
Q ss_pred c-hhHHHHHHHH
Q 046651 244 C-YGSKILRNFR 254 (392)
Q Consensus 244 ~-~G~~I~~NF~ 254 (392)
+ ..+.||++|+
T Consensus 167 ~~~~~~lf~~f~ 178 (178)
T cd01744 167 PHDTEYLFDEFL 178 (178)
T ss_pred CCCchHhHhhhC
Confidence 4 4678999984
|
This group of sequences represents the small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. CPSase II catalyzes the production of carbomyl phosphate (CP) from bicarbonate, glutamine and two molecules of MgATP. The reaction is believed to proceed by a series of four biochemical reactions involving a minimum of three discrete highly reactive intermediates. The synthesis of CP is critical for the initiation of two separate biosynthetic pathways. In one CP is coupled to aspartate, its carbon and nitrogen nuclei ultimately incorporated into the aromatic moieties of pyrimidine nucleotides. In the second pathway CP is condensed with ornithine at the start of the urea cycle and is utilized for the detoxification of ammonia and biosynthesis of arginine. CPSases may be encoded by one or by several genes, depending on the species. The E.coli enzyme is |
| >CHL00197 carA carbamoyl-phosphate synthase arginine-specific small subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.3e-31 Score=268.14 Aligned_cols=182 Identities=26% Similarity=0.451 Sum_probs=145.0
Q ss_pred ccEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCc-hhHHHHHHHH
Q 046651 4 FVRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPED-IGICLRVLLE 82 (392)
Q Consensus 4 ~~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d-~gi~~~ll~~ 82 (392)
.+||+|||| +++|||.+.|.+ .|++++|++++.. .+++.. .++|+||||||||+|....+ +..+.+++ +
T Consensus 192 ~~~I~viD~--g~k~ni~~~L~~-~G~~v~vvp~~~~-~~~i~~-----~~~dgIilSgGPg~p~~~~~~i~~i~~~~-~ 261 (382)
T CHL00197 192 QLKIIVIDF--GVKYNILRRLKS-FGCSITVVPATSP-YQDILS-----YQPDGILLSNGPGDPSAIHYGIKTVKKLL-K 261 (382)
T ss_pred CCEEEEEEC--CcHHHHHHHHHH-CCCeEEEEcCCCC-HHHHhc-----cCCCEEEEcCCCCChhHHHHHHHHHHHHH-h
Confidence 489999999 899999999998 6999999999864 677654 57999999999999965333 22333333 2
Q ss_pred cCCCCEEEEcHHHHHHHHHhCCeeeecCCCceeceeEEEecCCcccccCCCCCCcceEEE-eeecceeecCCCCC-CcEE
Q 046651 83 CWDVPILGVCLGHQALGFVHGADIVHAPEPVHGRLSEIVHNGDRLFHDIPSGQNSGFKVV-RYHSLIIDADSLPK-ELIP 160 (392)
Q Consensus 83 ~~~iPILGVCLGhQ~La~a~Gg~V~~apep~hG~~s~i~h~g~~LF~~ips~~~s~f~Vv-ryHSl~V~~~sLP~-~l~~ 160 (392)
.++||||||||||+|+.++||++.+++.+.+|....+ .++.. +.+. +||++.++.+++++ .+.+
T Consensus 262 -~~~PilGIClGhQlLa~a~Gg~v~k~~~Gh~g~n~pv---------~~~~~----v~itsq~H~~~v~~~sv~~~~~~v 327 (382)
T CHL00197 262 -YNIPIFGICMGHQILSLALEAKTFKLKFGHRGLNHPS---------GLNQQ----VEITSQNHGFAVNLESLAKNKFYI 327 (382)
T ss_pred -CCCCEEEEcHHHHHHHHHhCCEEeccCCCCCCCCEec---------CCCCc----eEEeecchheEeeccccCCCCcEE
Confidence 3899999999999999999999999886665543222 23333 5565 89999999888886 6888
Q ss_pred EEEecCCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCcccccccccCCcceEEEEEecCCCEEEEeccCCC
Q 046651 161 IAWSNSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGIMHSTRPHYGVQFHPES 240 (392)
Q Consensus 161 iAwt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vmgi~h~~~P~~GVQFHPEs 240 (392)
++++.+. + .+|||+|+++|+||||||||+
T Consensus 328 t~~~~nD-------------g--------------------------------------tvegi~h~~~pi~gVQFHPE~ 356 (382)
T CHL00197 328 THFNLND-------------G--------------------------------------TVAGISHSPKPYFSVQYHPEA 356 (382)
T ss_pred EEEECCC-------------C--------------------------------------CEEEEEECCCCcEEEeeCCCC
Confidence 8886320 4 789999999999999999999
Q ss_pred CCCchh-HHHHHHHHHHHHHh
Q 046651 241 IATCYG-SKILRNFREITEDY 260 (392)
Q Consensus 241 iat~~G-~~I~~NF~~l~~~~ 260 (392)
..++++ ..||++|+++++..
T Consensus 357 ~~gp~d~~~lf~~Fv~~~~~~ 377 (382)
T CHL00197 357 SPGPHDADYLFEYFIEIIKHS 377 (382)
T ss_pred CCCCCCHHHHHHHHHHHHHhh
Confidence 888775 57999999998753
|
|
| >TIGR01368 CPSaseIIsmall carbamoyl-phosphate synthase, small subunit | Back alignment and domain information |
|---|
Probab=99.97 E-value=4e-31 Score=265.87 Aligned_cols=180 Identities=27% Similarity=0.398 Sum_probs=146.4
Q ss_pred cEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHH-c
Q 046651 5 VRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLE-C 83 (392)
Q Consensus 5 ~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~-~ 83 (392)
.||++||+ +.++||++.|.+ .|+.++|++++. +.+++.. ..+|+||||||||+|... ....+++++ .
T Consensus 174 ~~i~viD~--G~k~ni~~~L~~-~G~~v~vvp~~~-~~~~i~~-----~~pDGIiLSgGPgdp~~~---~~~i~~i~~~~ 241 (358)
T TIGR01368 174 KRVVVIDF--GVKQNILRRLVK-RGCEVTVVPYDT-DAEEIKK-----YNPDGIFLSNGPGDPAAV---EPAIETIRKLL 241 (358)
T ss_pred cEEEEEeC--CcHHHHHHHHHH-CCCEEEEEcCCC-CHHHHHh-----hCCCEEEECCCCCCHHHH---HHHHHHHHHHH
Confidence 68999998 788999999998 799999999986 4777755 347999999999998642 223333433 1
Q ss_pred CCCCEEEEcHHHHHHHHHhCCeeeecCCCceeceeEEEecCCcccccCCCCCCcceEEEeeecceeecCCCC-CCcEEEE
Q 046651 84 WDVPILGVCLGHQALGFVHGADIVHAPEPVHGRLSEIVHNGDRLFHDIPSGQNSGFKVVRYHSLIIDADSLP-KELIPIA 162 (392)
Q Consensus 84 ~~iPILGVCLGhQ~La~a~Gg~V~~apep~hG~~s~i~h~g~~LF~~ips~~~s~f~VvryHSl~V~~~sLP-~~l~~iA 162 (392)
.++||||||+|||+|+.++||++.+++.+.||....+.... .++ .+.+.++|++.|++++|| ++++++|
T Consensus 242 ~~~PILGIClG~QlLa~a~Gg~v~kl~~gh~G~nhpV~~~~--------~~~--v~itsqnH~~aV~~~~l~~~~l~vta 311 (358)
T TIGR01368 242 EKIPIFGICLGHQLLALAFGAKTYKMKFGHRGGNHPVKDLI--------TGR--VEITSQNHGYAVDPDSLPAGDLEVTH 311 (358)
T ss_pred cCCCEEEECHHHHHHHHHhCCceeccCcCcCCCceeeEECC--------CCc--EEEeecCCCcEEcccccCCCceEEEE
Confidence 38999999999999999999999999988999877665422 221 144568999999987788 6899999
Q ss_pred Eec-CCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCcccccccccCCcceEEEEEecCCCEEEEeccCCCC
Q 046651 163 WSN-SADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGIMHSTRPHYGVQFHPESI 241 (392)
Q Consensus 163 wt~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vmgi~h~~~P~~GVQFHPEsi 241 (392)
++. + + .||||+|+++|+||||||||+.
T Consensus 312 ~~~nD--------------g--------------------------------------~Vegi~h~~~pi~gVQfHPE~~ 339 (358)
T TIGR01368 312 VNLND--------------G--------------------------------------TVEGIRHKDLPVFSVQYHPEAS 339 (358)
T ss_pred EECCC--------------C--------------------------------------cEEEEEECCCCEEEEEECCCCC
Confidence 984 4 5 8999999999999999999998
Q ss_pred CCch-hHHHHHHHHHHHH
Q 046651 242 ATCY-GSKILRNFREITE 258 (392)
Q Consensus 242 at~~-G~~I~~NF~~l~~ 258 (392)
.++. .+.||++|++++.
T Consensus 340 ~gp~d~~~lF~~F~~~~~ 357 (358)
T TIGR01368 340 PGPHDTEYLFDEFIDLIK 357 (358)
T ss_pred CCCCChHHHHHHHHHHhh
Confidence 8775 5789999998874
|
This model represents the whole of the small chain of the glutamine-dependent form (EC 6.3.5.5) of carbamoyl phosphate synthase, CPSase II. The C-terminal domain has glutamine amidotransferase activity. Note that the sequence from the mammalian urea cycle form has lost the active site Cys, resulting in an ammonia-dependent form, CPSase I (EC 6.3.4.16). CPSases of pyrimidine biosynthesis, arginine biosynthesis, and the urea cycle may be encoded by one or by several genes, depending on the species. |
| >PRK12838 carbamoyl phosphate synthase small subunit; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.5e-31 Score=263.53 Aligned_cols=182 Identities=29% Similarity=0.406 Sum_probs=147.8
Q ss_pred ccEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHH-
Q 046651 4 FVRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLE- 82 (392)
Q Consensus 4 ~~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~- 82 (392)
..+|++||+ ++++||++.|.+ .|..+++++++.. .+++.. ..+|+||||||||+|.... ...+++++
T Consensus 167 ~~~V~viD~--G~k~ni~~~L~~-~G~~v~vvp~~~~-~~~i~~-----~~~DGIiLsgGPgdp~~~~---~~~~~i~~~ 234 (354)
T PRK12838 167 GKHVALIDF--GYKKSILRSLSK-RGCKVTVLPYDTS-LEEIKN-----LNPDGIVLSNGPGDPKELQ---PYLPEIKKL 234 (354)
T ss_pred CCEEEEECC--CHHHHHHHHHHH-CCCeEEEEECCCC-HHHHhh-----cCCCEEEEcCCCCChHHhH---HHHHHHHHH
Confidence 368999999 699999999998 7999999999864 667654 4699999999999986432 22334444
Q ss_pred cCCCCEEEEcHHHHHHHHHhCCeeeecCCCceeceeEEEecCCcccccCCCCCCcceEEEeeecceeecCCCCC-CcEEE
Q 046651 83 CWDVPILGVCLGHQALGFVHGADIVHAPEPVHGRLSEIVHNGDRLFHDIPSGQNSGFKVVRYHSLIIDADSLPK-ELIPI 161 (392)
Q Consensus 83 ~~~iPILGVCLGhQ~La~a~Gg~V~~apep~hG~~s~i~h~g~~LF~~ips~~~s~f~VvryHSl~V~~~sLP~-~l~~i 161 (392)
...+||||||+|||+|+.++||++.+++.+.||....|...... + .+.+.+||++.|+.++++. .++++
T Consensus 235 ~~~~PvlGIClG~QlLa~a~Gg~v~kl~~gh~G~~hpV~~~~~~--------~--~~~ts~~H~~aV~~~sl~~~~l~v~ 304 (354)
T PRK12838 235 ISSYPILGICLGHQLIALALGADTEKLPFGHRGANHPVIDLTTG--------R--VWMTSQNHGYVVDEDSLDGTPLSVR 304 (354)
T ss_pred hcCCCEEEECHHHHHHHHHhCCEEecCCCCccCCceEEEECCCC--------e--EEEeccchheEecccccCCCCcEEE
Confidence 22499999999999999999999999998999988877653221 1 1456689999998877875 48888
Q ss_pred EEec-CCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCcccccccccCCcceEEEEEecCCCEEEEeccCCC
Q 046651 162 AWSN-SADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGIMHSTRPHYGVQFHPES 240 (392)
Q Consensus 162 Awt~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vmgi~h~~~P~~GVQFHPEs 240 (392)
+++. + + .+|||+|+++|+||||||||+
T Consensus 305 a~~~~D--------------g--------------------------------------~Veai~~~~~pi~gVQfHPE~ 332 (354)
T PRK12838 305 FFNVND--------------G--------------------------------------SIEGLRHKKKPVLSVQFHPEA 332 (354)
T ss_pred EEECCC--------------C--------------------------------------eEEEEEECCCCEEEEEeCCCC
Confidence 8863 3 4 899999999999999999999
Q ss_pred CCCch-hHHHHHHHHHHHHH
Q 046651 241 IATCY-GSKILRNFREITED 259 (392)
Q Consensus 241 iat~~-G~~I~~NF~~l~~~ 259 (392)
..++. +++||++|++++.+
T Consensus 333 ~~gp~d~~~lF~~F~~~~~~ 352 (354)
T PRK12838 333 HPGPHDAEYIFDEFLEMMEK 352 (354)
T ss_pred CCCCccHHHHHHHHHHHHHh
Confidence 88764 88999999998863
|
|
| >PRK13170 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-30 Score=242.15 Aligned_cols=175 Identities=29% Similarity=0.451 Sum_probs=136.9
Q ss_pred cEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCc----hhHHHHHH
Q 046651 5 VRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPED----IGICLRVL 80 (392)
Q Consensus 5 ~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d----~gi~~~ll 80 (392)
|||+|||++++|.+++.+.|++ .|+++++++++ +++ .++|+||| ||||++....+ .+ ..+.+
T Consensus 1 m~i~iid~g~gn~~s~~~~l~~-~g~~~~~v~~~----~~~-------~~~d~iIl-PG~G~~~~~~~~l~~~~-l~~~i 66 (196)
T PRK13170 1 MNVVIIDTGCANLSSVKFAIER-LGYEPVVSRDP----DVI-------LAADKLFL-PGVGTAQAAMDQLRERE-LIDLI 66 (196)
T ss_pred CeEEEEeCCCchHHHHHHHHHH-CCCeEEEECCH----HHh-------CCCCEEEE-CCCCchHHHHHHHHHcC-hHHHH
Confidence 8999999999999999999998 69999999754 344 45899999 99999865322 12 23444
Q ss_pred HHcCCCCEEEEcHHHHHHHHHh---C---------Ceeeec-----CCCceeceeEEEecCCcccccCCCCCCcceEEEe
Q 046651 81 LECWDVPILGVCLGHQALGFVH---G---------ADIVHA-----PEPVHGRLSEIVHNGDRLFHDIPSGQNSGFKVVR 143 (392)
Q Consensus 81 ~~~~~iPILGVCLGhQ~La~a~---G---------g~V~~a-----pep~hG~~s~i~h~g~~LF~~ips~~~s~f~Vvr 143 (392)
.+. ++||||||+|||+|+.+. | ++|.+. +.|+.|+......++++||+++|+. +.+++
T Consensus 67 ~~~-~~PilGIClG~Qll~~~~~~~~~~~~lg~~~g~v~~~~~~~~~~p~~G~~~v~~~~~~~l~~~l~~~----~~v~~ 141 (196)
T PRK13170 67 KAC-TQPVLGICLGMQLLGERSEESGGVDCLGIIDGPVKKMTDFGLPLPHMGWNQVTPQAGHPLFQGIEDG----SYFYF 141 (196)
T ss_pred HHc-CCCEEEECHHHHHHhhhcccCCCCCCcccccEEEEECCCCCCCCCccccceeEeCCCChhhhCCCcC----CEEEE
Confidence 455 899999999999999997 2 456653 4467888654444678899999988 99999
Q ss_pred eecceeecCCCCCCcEEEEEecCCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCcccccccccCCcceEEE
Q 046651 144 YHSLIIDADSLPKELIPIAWSNSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMG 223 (392)
Q Consensus 144 yHSl~V~~~sLP~~l~~iAwt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vmg 223 (392)
||++. +|++...+|.++. + ..+.
T Consensus 142 ~Hs~~-----lp~~~~~la~s~~--------------~--------------------------------------~~~~ 164 (196)
T PRK13170 142 VHSYA-----MPVNEYTIAQCNY--------------G--------------------------------------EPFS 164 (196)
T ss_pred ECeee-----cCCCCcEEEEecC--------------C--------------------------------------CeEE
Confidence 99985 4556678888776 4 3444
Q ss_pred EEecCCCEEEEeccCCCCCCchhHHHHHHHHHH
Q 046651 224 IMHSTRPHYGVQFHPESIATCYGSKILRNFREI 256 (392)
Q Consensus 224 i~h~~~P~~GVQFHPEsiat~~G~~I~~NF~~l 256 (392)
..+.+.++||+|||||+. +++|.+||+||+++
T Consensus 165 ~~~~~~~i~G~QFHPE~~-~~~G~~~l~nfl~~ 196 (196)
T PRK13170 165 AAIQKDNFFGVQFHPERS-GAAGAQLLKNFLEM 196 (196)
T ss_pred EEEEcCCEEEEECCCCCc-ccccHHHHHHHhhC
Confidence 445678899999999995 68999999999863
|
|
| >PLN02771 carbamoyl-phosphate synthase (glutamine-hydrolyzing) | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-29 Score=258.39 Aligned_cols=168 Identities=23% Similarity=0.328 Sum_probs=138.4
Q ss_pred cEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHH-c
Q 046651 5 VRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLE-C 83 (392)
Q Consensus 5 ~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~-~ 83 (392)
.||++||. ..++||.+.|.+ .|+.++|++++.. .+++.. ..+|+||||||||+|... ....+.+++ .
T Consensus 241 ~~IvviD~--G~K~nIlr~L~~-~G~~v~VvP~~~~-~~ei~~-----~~pDGIiLSnGPGDP~~~---~~~ie~ik~l~ 308 (415)
T PLN02771 241 YHVIAYDF--GIKHNILRRLAS-YGCKITVVPSTWP-ASEALK-----MKPDGVLFSNGPGDPSAV---PYAVETVKELL 308 (415)
T ss_pred CEEEEECC--ChHHHHHHHHHH-cCCeEEEECCCCC-HHHHhh-----cCCCEEEEcCCCCChhHh---hHHHHHHHHHH
Confidence 68999998 559999999998 7999999999874 677765 579999999999999642 333344443 2
Q ss_pred CCCCEEEEcHHHHHHHHHhCCeeeecCCCceeceeEEEecCCcccccCCCCCCcceEEEeeecceeecCCCCCCcEEEEE
Q 046651 84 WDVPILGVCLGHQALGFVHGADIVHAPEPVHGRLSEIVHNGDRLFHDIPSGQNSGFKVVRYHSLIIDADSLPKELIPIAW 163 (392)
Q Consensus 84 ~~iPILGVCLGhQ~La~a~Gg~V~~apep~hG~~s~i~h~g~~LF~~ips~~~s~f~VvryHSl~V~~~sLP~~l~~iAw 163 (392)
.++||||||||||+|+.++||+|.+++.+.||....|.+.. .++. ..+.+||++.|++.+||++++++++
T Consensus 309 ~~iPIlGICLGhQlLa~AlGGkv~K~~~Gh~G~n~pV~~~~--------~~~v--~itsqnHg~aVd~~sLp~~~~vt~~ 378 (415)
T PLN02771 309 GKVPVFGICMGHQLLGQALGGKTFKMKFGHHGGNHPVRNNR--------TGRV--EISAQNHNYAVDPASLPEGVEVTHV 378 (415)
T ss_pred hCCCEEEEcHHHHHHHHhcCCeEEECCCCcccceEEEEECC--------CCCE--EEEecCHHHhhccccCCCceEEEEE
Confidence 48999999999999999999999999999999988776532 2210 3456999999988889999999999
Q ss_pred e-cCCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCcccccccccCCcceEEEEEecCCCEEEEeccCCCCC
Q 046651 164 S-NSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGIMHSTRPHYGVQFHPESIA 242 (392)
Q Consensus 164 t-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vmgi~h~~~P~~GVQFHPEsia 242 (392)
+ +| + .+|||+|.+.|+||||||||+..
T Consensus 379 nlnD--------------g--------------------------------------tvegi~~~~~pi~gVQFHPEa~p 406 (415)
T PLN02771 379 NLND--------------G--------------------------------------SCAGLAFPALNVMSLQYHPEASP 406 (415)
T ss_pred eCCC--------------C--------------------------------------cEEEEEECCCCEEEEEcCCCCCC
Confidence 7 44 5 89999999999999999999987
Q ss_pred Cchh
Q 046651 243 TCYG 246 (392)
Q Consensus 243 t~~G 246 (392)
+++.
T Consensus 407 gp~D 410 (415)
T PLN02771 407 GPHD 410 (415)
T ss_pred CCCc
Confidence 7653
|
|
| >cd01748 GATase1_IGP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS) | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.2e-29 Score=232.61 Aligned_cols=174 Identities=25% Similarity=0.328 Sum_probs=139.0
Q ss_pred EEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCC----CchhHHHHHHHH
Q 046651 7 TLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACP----EDIGICLRVLLE 82 (392)
Q Consensus 7 ~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~----~d~gi~~~ll~~ 82 (392)
|+|||++.+|...+.+.|++ .|++++++++++ ++ .++|+||| ||++.+... .+.+ ..+++++
T Consensus 1 i~i~d~g~~~~~~~~~~l~~-~g~~v~v~~~~~----~l-------~~~d~iii-pG~~~~~~~~~~~~~~~-~~~~i~~ 66 (198)
T cd01748 1 IAIIDYGMGNLRSVANALER-LGAEVIITSDPE----EI-------LSADKLIL-PGVGAFGDAMANLRERG-LIEALKE 66 (198)
T ss_pred CEEEeCCCChHHHHHHHHHH-CCCeEEEEcChH----Hh-------ccCCEEEE-CCCCcHHHHHHHHHHcC-hHHHHHH
Confidence 58999999999999999998 799999988543 33 45999999 777776431 1112 2344544
Q ss_pred --cCCCCEEEEcHHHHHHHHH------------hCCeeeecCC------CceeceeEEEecCCcccccCCCCCCcceEEE
Q 046651 83 --CWDVPILGVCLGHQALGFV------------HGADIVHAPE------PVHGRLSEIVHNGDRLFHDIPSGQNSGFKVV 142 (392)
Q Consensus 83 --~~~iPILGVCLGhQ~La~a------------~Gg~V~~ape------p~hG~~s~i~h~g~~LF~~ips~~~s~f~Vv 142 (392)
..++||||||+|||+|+.+ +|++|.+.+. +++|+.......+++||+++|.. +++.
T Consensus 67 ~~~~~~pilGiC~G~q~l~~~~~~g~~~~~lg~~~g~v~~~~~~~~~~~~~~G~~~v~~~~~~~lf~~l~~~----~~v~ 142 (198)
T cd01748 67 AIASGKPFLGICLGMQLLFESSEEGGGTKGLGLIPGKVVRFPASEGLKVPHMGWNQLEITKESPLFKGIPDG----SYFY 142 (198)
T ss_pred HHHCCCcEEEECHHHHHhccccccCCCCCCCCCcceEEEECCCCCCceEEEeccceEEECCCChhhhCCCCC----CeEE
Confidence 2489999999999999998 7899999875 47898876667788999999988 9999
Q ss_pred eeecceeecCCCCCCcEEEEEecCCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCcccccccccCCcceEE
Q 046651 143 RYHSLIIDADSLPKELIPIAWSNSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLM 222 (392)
Q Consensus 143 ryHSl~V~~~sLP~~l~~iAwt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vm 222 (392)
+||++.+.. |+.+..+|++++ + ..|
T Consensus 143 ~~Hs~~v~~---~~~~~~la~s~~--------------~--------------------------------------~~~ 167 (198)
T cd01748 143 FVHSYYAPP---DDPDYILATTDY--------------G--------------------------------------GKF 167 (198)
T ss_pred EEeEEEEec---CCcceEEEEecC--------------C--------------------------------------CeE
Confidence 999999974 445788998876 4 344
Q ss_pred EEEecCCCEEEEeccCCCCCCchhHHHHHHHH
Q 046651 223 GIMHSTRPHYGVQFHPESIATCYGSKILRNFR 254 (392)
Q Consensus 223 gi~h~~~P~~GVQFHPEsiat~~G~~I~~NF~ 254 (392)
...+.++++||||||||+. +++|++|++||+
T Consensus 168 ~~~~~~~~i~GvQFHPE~~-~~~g~~~~~nf~ 198 (198)
T cd01748 168 PAAVEKDNIFGTQFHPEKS-GKAGLKLLKNFL 198 (198)
T ss_pred EEEEEcCCEEEEECCCccc-cHhHHHHHHhhC
Confidence 4456788999999999996 679999999994
|
Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). IGPS incorporates ammonia derived from glutamine into N1-[(5'-phosphoribulosyl)-formimino]-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to form 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR) and imidazole glycerol phosphate (IGP). The glutamine amidotransferase domain generates the ammonia nucleophile which is channeled from the glutaminase active site to the PRFAR active site. IGPS belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site. |
| >COG0518 GuaA GMP synthase - Glutamine amidotransferase domain [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3e-29 Score=233.93 Aligned_cols=186 Identities=28% Similarity=0.387 Sum_probs=155.3
Q ss_pred cEEEEEECCCCchHHHHHHHHHhCC-CCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCc-hhHHHHHHHH
Q 046651 5 VRTLLIDNYDSYTYNIYQELSTING-VPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPED-IGICLRVLLE 82 (392)
Q Consensus 5 ~r~LlIDnyDSyT~nl~q~L~~v~G-~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d-~gi~~~ll~~ 82 (392)
+++||+|++..|+.-|.+.+++ .| +.-+++.++.. .+++.. .++|+|||||||.|++.... ...+..+|++
T Consensus 2 ~~ilIld~g~q~~~li~r~~re-~g~v~~e~~~~~~~-~~~~~~-----~~~~giIlsGgp~sv~~~~~w~~~~~~~i~~ 74 (198)
T COG0518 2 RKILILDFGGQYLGLIARRLRE-LGYVYSEIVPYTGD-AEELPL-----DSPDGIIISGGPMSVYDEDPWLPREKDLIKD 74 (198)
T ss_pred cEEEEEeCCCcHhHHHHHHHHH-cCCceEEEEeCCCC-cccccc-----cCCCEEEEcCCCCCCccccccchhHHHHHHH
Confidence 5799999999999999999997 67 77777777764 555543 56799999999998887542 4556677776
Q ss_pred c--CCCCEEEEcHHHHHHHHHhCCeeeecCCCceeceeEEEe-cCCcccccCCCCCCcce-EEEeeecceeecCCCCCCc
Q 046651 83 C--WDVPILGVCLGHQALGFVHGADIVHAPEPVHGRLSEIVH-NGDRLFHDIPSGQNSGF-KVVRYHSLIIDADSLPKEL 158 (392)
Q Consensus 83 ~--~~iPILGVCLGhQ~La~a~Gg~V~~apep~hG~~s~i~h-~g~~LF~~ips~~~s~f-~VvryHSl~V~~~sLP~~l 158 (392)
. .++||||||+|||+||.++||+|.+.+..+.|+...-.. ..+.||+++|.. + .|+.+|.+.++. ||+++
T Consensus 75 ~~~p~~pvLGIC~G~Ql~A~~lGg~V~~~~~~E~G~~~v~~~~~~~~l~~gl~~~----~~~v~~sH~D~v~~--lP~g~ 148 (198)
T COG0518 75 AGVPGKPVLGICLGHQLLAKALGGKVERGPKREIGWTPVELTEGDDPLFAGLPDL----FTTVFMSHGDTVVE--LPEGA 148 (198)
T ss_pred hCCCCCCEEEEChhHHHHHHHhCCEEeccCCCccceEEEEEecCccccccCCccc----cCccccchhCcccc--CCCCC
Confidence 4 355699999999999999999999999899998755333 334799999987 6 599999999998 99999
Q ss_pred EEEEEecCCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCcccccccccCCcceEEEEEecCCCEEEEeccC
Q 046651 159 IPIAWSNSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGIMHSTRPHYGVQFHP 238 (392)
Q Consensus 159 ~~iAwt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vmgi~h~~~P~~GVQFHP 238 (392)
+++|.|+. + .++|+++. +++|||||||
T Consensus 149 ~vlA~s~~--------------c--------------------------------------p~qa~~~~-~~~~gvQFHp 175 (198)
T COG0518 149 VVLASSET--------------C--------------------------------------PNQAFRYG-KRAYGVQFHP 175 (198)
T ss_pred EEEecCCC--------------C--------------------------------------hhhheecC-CcEEEEeeee
Confidence 99999887 6 78899987 8999999999
Q ss_pred CCCCCchhHHHHHHHH-HHH
Q 046651 239 ESIATCYGSKILRNFR-EIT 257 (392)
Q Consensus 239 Esiat~~G~~I~~NF~-~l~ 257 (392)
|... ++|+++++||. +++
T Consensus 176 Ev~~-~~~~~~l~nf~~~i~ 194 (198)
T COG0518 176 EVTH-EYGEALLENFAHEIC 194 (198)
T ss_pred EEeH-HHHHHHHHHhhhhhc
Confidence 9955 89999999999 554
|
|
| >PRK13146 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.3e-29 Score=232.29 Aligned_cols=181 Identities=24% Similarity=0.317 Sum_probs=138.6
Q ss_pred ccEEEEEECCCCchHHHHHHHHHhCCC--CeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCC-C---CchhHHH
Q 046651 4 FVRTLLIDNYDSYTYNIYQELSTINGV--PPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPAC-P---EDIGICL 77 (392)
Q Consensus 4 ~~r~LlIDnyDSyT~nl~q~L~~v~G~--~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~-~---~d~gi~~ 77 (392)
.||++|||++.++..++.++|++ .|. ++.+++ . .+++ .++|+||| ||.|+... . ...+...
T Consensus 1 ~~~~~iid~g~gn~~s~~~al~~-~g~~~~v~~~~--~--~~~l-------~~~d~lIl-pG~~~~~~~~~~l~~~~~~~ 67 (209)
T PRK13146 1 MMTVAIIDYGSGNLRSAAKALER-AGAGADVVVTA--D--PDAV-------AAADRVVL-PGVGAFADCMRGLRAVGLGE 67 (209)
T ss_pred CCeEEEEECCCChHHHHHHHHHH-cCCCccEEEEC--C--HHHh-------cCCCEEEE-CCCCcHHHHHHHHHHCCcHH
Confidence 48999999999999999999998 688 555553 2 3555 56999999 55444321 1 1123344
Q ss_pred HHHHHc--CCCCEEEEcHHHHHHHHH------------hCCeeeec-------CCCceeceeEEEecCCcccccCCCCCC
Q 046651 78 RVLLEC--WDVPILGVCLGHQALGFV------------HGADIVHA-------PEPVHGRLSEIVHNGDRLFHDIPSGQN 136 (392)
Q Consensus 78 ~ll~~~--~~iPILGVCLGhQ~La~a------------~Gg~V~~a-------pep~hG~~s~i~h~g~~LF~~ips~~~ 136 (392)
++++.. .++||||||+|||+|+.+ ++++|.+. +-|+.|+......++++||+++|..
T Consensus 68 ~~~~~~~~~~~PvlGiC~G~q~l~~~~~e~~~~~glg~l~g~v~~~~~~~~~~~~p~~G~~~v~~~~~~~lf~~~~~~-- 145 (209)
T PRK13146 68 AVIEAVLAAGRPFLGICVGMQLLFERGLEHGDTPGLGLIPGEVVRFQPDGPALKVPHMGWNTVDQTRDHPLFAGIPDG-- 145 (209)
T ss_pred HHHHHHHhCCCcEEEECHHHHHHhhcccccCCCCCcceEeEEEEEcCCCCCCCccCccChHHeeeCCCChhccCCCCC--
Confidence 555542 589999999999999999 88999886 2356887755445678899999988
Q ss_pred cceEEEeeecceeecCCCCCCcEEEEEecCCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCcccccccccC
Q 046651 137 SGFKVVRYHSLIIDADSLPKELIPIAWSNSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRM 216 (392)
Q Consensus 137 s~f~VvryHSl~V~~~sLP~~l~~iAwt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 216 (392)
+.+.+|||+.+.. +| ...++|++++ +
T Consensus 146 --~~v~~~Hs~~v~~--~~-~~~~la~s~~--------------~----------------------------------- 171 (209)
T PRK13146 146 --ARFYFVHSYYAQP--AN-PADVVAWTDY--------------G----------------------------------- 171 (209)
T ss_pred --CEEEEEeEEEEEc--CC-CCcEEEEEcC--------------C-----------------------------------
Confidence 9999999999986 44 5688999876 3
Q ss_pred CcceEEEEEecCCCEEEEeccCCCCCCchhHHHHHHHHHHH
Q 046651 217 RREVLMGIMHSTRPHYGVQFHPESIATCYGSKILRNFREIT 257 (392)
Q Consensus 217 ~~~~vmgi~h~~~P~~GVQFHPEsiat~~G~~I~~NF~~l~ 257 (392)
..++++. .+.++||||||||+. +++|.+|++||++++
T Consensus 172 --~~~~a~~-~~~~i~GvQFHPE~s-~~~G~~ll~nfl~~~ 208 (209)
T PRK13146 172 --GPFTAAV-ARDNLFATQFHPEKS-QDAGLALLRNFLAWL 208 (209)
T ss_pred --CEEEEEE-ecCCEEEEEcCCccc-HHHHHHHHHHHHhhc
Confidence 0455554 568999999999995 789999999999874
|
|
| >CHL00188 hisH imidazole glycerol phosphate synthase subunit hisH; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.5e-28 Score=230.89 Aligned_cols=180 Identities=18% Similarity=0.233 Sum_probs=129.6
Q ss_pred ccEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCC-C---chhHHHHH
Q 046651 4 FVRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACP-E---DIGICLRV 79 (392)
Q Consensus 4 ~~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~-~---d~gi~~~l 79 (392)
.|||.|||...++-..+.++|+. .|.++++++++ +++ ..+|.||+ ||||++... . +.++...+
T Consensus 1 ~~~v~iid~~~GN~~sl~~al~~-~g~~v~vv~~~----~~l-------~~~d~iIl-PG~g~~~~~~~~l~~~gl~~~i 67 (210)
T CHL00188 1 MMKIGIIDYSMGNLHSVSRAIQQ-AGQQPCIINSE----SEL-------AQVHALVL-PGVGSFDLAMKKLEKKGLITPI 67 (210)
T ss_pred CcEEEEEEcCCccHHHHHHHHHH-cCCcEEEEcCH----HHh-------hhCCEEEE-CCCCchHHHHHHHHHCCHHHHH
Confidence 37899999998999999999998 79999988653 343 34899886 999997521 1 12333333
Q ss_pred HHH-cCCCCEEEEcHHHHHHHHH-----------hCCeeeec------CCCceeceeEEEecC------CcccccCCCCC
Q 046651 80 LLE-CWDVPILGVCLGHQALGFV-----------HGADIVHA------PEPVHGRLSEIVHNG------DRLFHDIPSGQ 135 (392)
Q Consensus 80 l~~-~~~iPILGVCLGhQ~La~a-----------~Gg~V~~a------pep~hG~~s~i~h~g------~~LF~~ips~~ 135 (392)
.+. ..++||||||+|||+|+.. ++|+|.+. +-|+.|+......+. +.||+++|..
T Consensus 68 ~~~~~~~~pvlGIClG~Qll~~~~~~~~~~glg~~~G~v~~~~~~~~~~~p~~Gw~~v~~~~~~~~~~~~~lf~~l~~~- 146 (210)
T CHL00188 68 KKWIAEGNPFIGICLGLHLLFETSEEGKEEGLGIYKGQVKRLKHSPVKVIPHMGWNRLECQNSECQNSEWVNWKAWPLN- 146 (210)
T ss_pred HHHHHcCCCEEEECHHHHHHhhccccCCcCCccceeEEEEECCCCCCCccCccCCccceecCCcccccCChhhcCCCCC-
Confidence 332 2489999999999999986 44566655 335566654322222 5699999988
Q ss_pred CcceEEEeeecceeecCCCCCCcEEEEEecCCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCccccccccc
Q 046651 136 NSGFKVVRYHSLIIDADSLPKELIPIAWSNSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNR 215 (392)
Q Consensus 136 ~s~f~VvryHSl~V~~~sLP~~l~~iAwt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 215 (392)
+.+++|||+.+.++ .+. ..++++.. +
T Consensus 147 ---~~v~~~HS~~v~p~-~~~--~l~~t~~~--------------~---------------------------------- 172 (210)
T CHL00188 147 ---PWAYFVHSYGVMPK-SQA--CATTTTFY--------------G---------------------------------- 172 (210)
T ss_pred ---CEEEEeCccEecCC-CCc--eEEEEEec--------------C----------------------------------
Confidence 99999999998532 122 23344333 1
Q ss_pred CCcceEEEEEecCCCEEEEeccCCCCCCchhHHHHHHHHH
Q 046651 216 MRREVLMGIMHSTRPHYGVQFHPESIATCYGSKILRNFRE 255 (392)
Q Consensus 216 ~~~~~vmgi~h~~~P~~GVQFHPEsiat~~G~~I~~NF~~ 255 (392)
.+..+|++++ .++||||||||+. +++|++|++||++
T Consensus 173 -~~~~v~a~~~--~~i~GvQFHPE~s-~~~G~~il~nfl~ 208 (210)
T CHL00188 173 -KQQMVAAIEY--DNIFAMQFHPEKS-GEFGLWLLREFMK 208 (210)
T ss_pred -CcceEEEEec--CCEEEEecCCccc-cHhHHHHHHHHHh
Confidence 0117999984 5999999999996 8999999999985
|
|
| >PRK13181 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.2e-28 Score=226.41 Aligned_cols=176 Identities=27% Similarity=0.312 Sum_probs=134.9
Q ss_pred EEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCC----CchhHHHHHHHH
Q 046651 7 TLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACP----EDIGICLRVLLE 82 (392)
Q Consensus 7 ~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~----~d~gi~~~ll~~ 82 (392)
|+|||++.++...+.+.|+. .|++++++++ .+++ .++|+||+ ||+|++... .+.++. +.|++
T Consensus 2 i~vid~g~gn~~~~~~~l~~-~g~~v~~~~~----~~~l-------~~~d~lil-pG~g~~~~~~~~l~~~~~~-~~i~~ 67 (199)
T PRK13181 2 IAIIDYGAGNLRSVANALKR-LGVEAVVSSD----PEEI-------AGADKVIL-PGVGAFGQAMRSLRESGLD-EALKE 67 (199)
T ss_pred EEEEeCCCChHHHHHHHHHH-CCCcEEEEcC----hHHh-------ccCCEEEE-CCCCCHHHHHHHHHHCChH-HHHHH
Confidence 99999998899999999988 7999988854 2344 45899998 787776421 112333 33333
Q ss_pred --cCCCCEEEEcHHHHHHHHH-----------hCCeeeecCC-----CceeceeEEEecCCcccccCCCCCCcceEEEee
Q 046651 83 --CWDVPILGVCLGHQALGFV-----------HGADIVHAPE-----PVHGRLSEIVHNGDRLFHDIPSGQNSGFKVVRY 144 (392)
Q Consensus 83 --~~~iPILGVCLGhQ~La~a-----------~Gg~V~~ape-----p~hG~~s~i~h~g~~LF~~ips~~~s~f~Vvry 144 (392)
..++||||||+|||+|+.+ +|++|.+.+. +++|+.......+++||+++|.. ++++++
T Consensus 68 ~~~~~~PvlGiC~G~Qll~~~~~~~~~~glg~l~~~v~~~~~~~~~~~~~G~~~v~~~~~~~lf~~l~~~----~~~~~~ 143 (199)
T PRK13181 68 HVEKKQPVLGICLGMQLLFESSEEGNVKGLGLIPGDVKRFRSEPLKVPQMGWNSVKPLKESPLFKGIEEG----SYFYFV 143 (199)
T ss_pred HHHCCCCEEEECHhHHHhhhhcccCCcCCcceEEEEEEEcCCCCCCCCccCccccccCCCChhHcCCCCC----CEEEEe
Confidence 3489999999999999999 7899998764 57888655445678899999988 899999
Q ss_pred ecceeecCCCCCCcEEEEEecCCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCcccccccccCCcceEEEE
Q 046651 145 HSLIIDADSLPKELIPIAWSNSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGI 224 (392)
Q Consensus 145 HSl~V~~~sLP~~l~~iAwt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vmgi 224 (392)
|++.+.. .+ .+.++|++++ + ..+..
T Consensus 144 Hs~~v~~--~~-~~~~lA~s~~--------------~--------------------------------------~~~~~ 168 (199)
T PRK13181 144 HSYYVPC--ED-PEDVLATTEY--------------G--------------------------------------VPFCS 168 (199)
T ss_pred CeeEecc--CC-cccEEEEEcC--------------C--------------------------------------CEEEE
Confidence 9999865 44 3568999876 3 23333
Q ss_pred EecCCCEEEEeccCCCCCCchhHHHHHHHHHH
Q 046651 225 MHSTRPHYGVQFHPESIATCYGSKILRNFREI 256 (392)
Q Consensus 225 ~h~~~P~~GVQFHPEsiat~~G~~I~~NF~~l 256 (392)
.+.++++||||||||+. +++|+.||+||+++
T Consensus 169 ~~~~~~i~GvQFHPE~~-~~~g~~ll~nfl~~ 199 (199)
T PRK13181 169 AVAKDNIYAVQFHPEKS-GKAGLKLLKNFAEL 199 (199)
T ss_pred EEECCCEEEEECCCccC-CHHHHHHHHHHHhC
Confidence 33467899999999985 78999999999863
|
|
| >PRK13152 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.9e-28 Score=225.51 Aligned_cols=174 Identities=24% Similarity=0.358 Sum_probs=132.0
Q ss_pred EEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCC-C---chhHHHHHHHH
Q 046651 7 TLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACP-E---DIGICLRVLLE 82 (392)
Q Consensus 7 ~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~-~---d~gi~~~ll~~ 82 (392)
++|||++.++..++.+.|++ .|.+++++++++ ++ ..+|+||| ||+|++... . ..++...+++.
T Consensus 2 i~iid~g~~n~~~v~~~l~~-~g~~~~~~~~~~----~l-------~~~d~lil-PG~g~~~~~~~~l~~~~~~~~l~~~ 68 (201)
T PRK13152 2 IALIDYKAGNLNSVAKAFEK-IGAINFIAKNPK----DL-------QKADKLLL-PGVGSFKEAMKNLKELGFIEALKEQ 68 (201)
T ss_pred EEEEECCCCcHHHHHHHHHH-CCCeEEEECCHH----HH-------cCCCEEEE-CCCCchHHHHHHHHHcCcHHHHHHH
Confidence 89999999999999999998 699988887643 44 35899999 999998542 1 12343444432
Q ss_pred --cCCCCEEEEcHHHHHHHHH------------hCCeeeecCC------CceeceeEEE-ecCCcccccCCCCCCcceEE
Q 046651 83 --CWDVPILGVCLGHQALGFV------------HGADIVHAPE------PVHGRLSEIV-HNGDRLFHDIPSGQNSGFKV 141 (392)
Q Consensus 83 --~~~iPILGVCLGhQ~La~a------------~Gg~V~~ape------p~hG~~s~i~-h~g~~LF~~ips~~~s~f~V 141 (392)
..++||||||+|||+|+.+ ++++|.+.+. ++.|+ ..|. ..+++||+++|.. +++
T Consensus 69 ~~~~~~pvlGiC~G~Q~l~~~~~~~~~~~~lg~~~g~v~~~~~~~~~~~~~~g~-~~v~~~~~~~l~~~l~~~----~~~ 143 (201)
T PRK13152 69 VLVQKKPILGICLGMQLFLERGYEGGVCEGLGFIEGEVVKFEEDLNLKIPHMGW-NELEILKQSPLYQGIPEK----SDF 143 (201)
T ss_pred HHhCCCcEEEECHhHHHHhhcccccCCcCCcccccEEEEECCCCCCCcCCccCe-EEEEECCCChhhhCCCCC----CeE
Confidence 2489999999999999997 1277876542 23344 4444 5688999999887 899
Q ss_pred EeeecceeecCCCCCCcEEEEEecCCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCcccccccccCCcceE
Q 046651 142 VRYHSLIIDADSLPKELIPIAWSNSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVL 221 (392)
Q Consensus 142 vryHSl~V~~~sLP~~l~~iAwt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v 221 (392)
+++||+.+.. ++ +..+|++.+ + ..++
T Consensus 144 ~~vHS~~v~~--~~--~~v~a~~~~--------------g------------------------------------~~~~ 169 (201)
T PRK13152 144 YFVHSFYVKC--KD--EFVSAKAQY--------------G------------------------------------HKFV 169 (201)
T ss_pred EEEcccEeec--CC--CcEEEEECC--------------C------------------------------------CEEE
Confidence 9999999975 33 456788776 3 0155
Q ss_pred EEEEecCCCEEEEeccCCCCCCchhHHHHHHHHH
Q 046651 222 MGIMHSTRPHYGVQFHPESIATCYGSKILRNFRE 255 (392)
Q Consensus 222 mgi~h~~~P~~GVQFHPEsiat~~G~~I~~NF~~ 255 (392)
++++ ..++||||||||+. +++|++||+||++
T Consensus 170 ~a~~--~~~i~GvQFHPE~~-~~~g~~ll~~Fl~ 200 (201)
T PRK13152 170 ASLQ--KDNIFATQFHPEKS-QNLGLKLLENFAR 200 (201)
T ss_pred EEEe--cCCEEEEeCCCeec-ChhhHHHHHHHHh
Confidence 5665 56899999999994 6799999999986
|
|
| >PRK13141 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-27 Score=222.54 Aligned_cols=179 Identities=27% Similarity=0.339 Sum_probs=138.3
Q ss_pred EEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCC----chhHHHHHHH
Q 046651 6 RTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPE----DIGICLRVLL 81 (392)
Q Consensus 6 r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~----d~gi~~~ll~ 81 (392)
+++|||+..+|..++.+.|++ .|+++.+++++ +++ .++|+||| ||++.+.... ..++ .++|+
T Consensus 1 ~i~~~d~~~~~~~~i~~~l~~-~G~~v~~~~~~----~~l-------~~~d~iii-pG~~~~~~~~~~~~~~~~-~~~i~ 66 (205)
T PRK13141 1 MIAIIDYGMGNLRSVEKALER-LGAEAVITSDP----EEI-------LAADGVIL-PGVGAFPDAMANLRERGL-DEVIK 66 (205)
T ss_pred CEEEEEcCCchHHHHHHHHHH-CCCeEEEECCH----HHh-------ccCCEEEE-CCCCchHHHHHHHHHcCh-HHHHH
Confidence 589999999999999999998 69999988653 344 45999999 5656543211 1122 34444
Q ss_pred H--cCCCCEEEEcHHHHHHHHH------------hCCeeeecCC------CceeceeEEEecCCcccccCCCCCCcceEE
Q 046651 82 E--CWDVPILGVCLGHQALGFV------------HGADIVHAPE------PVHGRLSEIVHNGDRLFHDIPSGQNSGFKV 141 (392)
Q Consensus 82 ~--~~~iPILGVCLGhQ~La~a------------~Gg~V~~ape------p~hG~~s~i~h~g~~LF~~ips~~~s~f~V 141 (392)
+ ..++||||||+|||+|+.. +|++|.+.+. ++.|.......++++||+++|.. +.+
T Consensus 67 ~~~~~~~pvlGIC~G~Qll~~~~~~~~~~~~lg~l~g~v~~~~~~~~~~~~~~g~~~i~~~~~~~l~~~l~~~----~~v 142 (205)
T PRK13141 67 EAVASGKPLLGICLGMQLLFESSEEFGETEGLGLLPGRVRRFPPEEGLKVPHMGWNQLELKKESPLLKGIPDG----AYV 142 (205)
T ss_pred HHHHCCCcEEEECHHHHHhhhccccCCCCCccceEEEEEEEcCCCCCCcccEecCccceeCCCChhhhCCCCC----CEE
Confidence 4 2589999999999999997 6799988762 34566544345688999999988 899
Q ss_pred EeeecceeecCCCCCCcEEEEEecCCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCcccccccccCCcceE
Q 046651 142 VRYHSLIIDADSLPKELIPIAWSNSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVL 221 (392)
Q Consensus 142 vryHSl~V~~~sLP~~l~~iAwt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v 221 (392)
.++|++.+. +|+++.++|++++ + ..+
T Consensus 143 ~~~Hs~~v~---~~~~~~v~a~~~~--------------~-------------------------------------~~~ 168 (205)
T PRK13141 143 YFVHSYYAD---PCDEEYVAATTDY--------------G-------------------------------------VEF 168 (205)
T ss_pred EEECeeEec---cCCcCeEEEEEeC--------------C-------------------------------------cEE
Confidence 999999995 5678889998765 2 157
Q ss_pred EEEEecCCCEEEEeccCCCCCCchhHHHHHHHHHHHH
Q 046651 222 MGIMHSTRPHYGVQFHPESIATCYGSKILRNFREITE 258 (392)
Q Consensus 222 mgi~h~~~P~~GVQFHPEsiat~~G~~I~~NF~~l~~ 258 (392)
+++. .++++||||||||+. .+.|++||+||++++.
T Consensus 169 ~a~~-~~~~i~GvQfHPE~~-~~~g~~l~~~fl~~~~ 203 (205)
T PRK13141 169 PAAV-GKDNVFGAQFHPEKS-GDVGLKILKNFVEMVE 203 (205)
T ss_pred EEEE-ecCCEEEEeCCCccc-hHHHHHHHHHHHHHhh
Confidence 7775 467999999999994 5789999999999874
|
|
| >PRK11366 puuD gamma-glutamyl-gamma-aminobutyrate hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.3e-27 Score=230.22 Aligned_cols=184 Identities=19% Similarity=0.242 Sum_probs=134.9
Q ss_pred HHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCC--------CCCch-----hHHHHHHHH--cC
Q 046651 20 IYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPA--------CPEDI-----GICLRVLLE--CW 84 (392)
Q Consensus 20 l~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~--------~~~d~-----gi~~~ll~~--~~ 84 (392)
.++.+.. +|..|+.++....+.+.+..++ ..+|||||+|||.+.. ..... ....++++. ..
T Consensus 31 y~~~i~~-aGg~pv~lp~~~~~~~~~~~~l---~~~DGlil~GG~~dv~P~~yg~~~~~~~~~~~rD~~e~~li~~a~~~ 106 (254)
T PRK11366 31 YLNAIIH-AGGLPIALPHALAEPSLLEQLL---PKLDGIYLPGSPSNVQPHLYGENGDEPDADPGRDLLSMALINAALER 106 (254)
T ss_pred HHHHHHH-CCCEEEEecCCCCCHHHHHHHH---HhCCEEEeCCCCCCcCHhhcCCCCCCCCCChhHHHHHHHHHHHHHHC
Confidence 4566666 6777878875432233444444 5699999999987552 11111 234566665 25
Q ss_pred CCCEEEEcHHHHHHHHHhCCeeeec----CCC-ceec------------eeEEEecCCcccccCCCCCCcceEEEeeecc
Q 046651 85 DVPILGVCLGHQALGFVHGADIVHA----PEP-VHGR------------LSEIVHNGDRLFHDIPSGQNSGFKVVRYHSL 147 (392)
Q Consensus 85 ~iPILGVCLGhQ~La~a~Gg~V~~a----pep-~hG~------------~s~i~h~g~~LF~~ips~~~s~f~VvryHSl 147 (392)
++||||||+|||+|+.++||+|.+. ++. .|+. ...|..+...++..+..+. ..+.|.+||++
T Consensus 107 ~~PILGICrG~Qllnva~GGtl~~~~~~~~~~~~h~~~~~~~~~~~~~~~h~v~~~~~s~l~~i~~~~-~~~~Vns~H~q 185 (254)
T PRK11366 107 RIPIFAICRGLQELVVATGGSLHRKLCEQPELLEHREDPELPVEQQYAPSHEVQVEEGGLLSALLPEC-SNFWVNSLHGQ 185 (254)
T ss_pred CCCEEEECHhHHHHHHHhCCeEeecccccccccccccCCccccccccCCceEEEECCCCcHHHhcCCC-ceEEeehHHHH
Confidence 9999999999999999999999975 222 2221 3456666666676663211 12889999999
Q ss_pred eeecCCCCCCcEEEEEecCCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCcccccccccCCcceEEEEEec
Q 046651 148 IIDADSLPKELIPIAWSNSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGIMHS 227 (392)
Q Consensus 148 ~V~~~sLP~~l~~iAwt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vmgi~h~ 227 (392)
.|+. ||++++++||+++ + ++|||++.
T Consensus 186 ~V~~--l~~gl~v~A~s~d--------------g--------------------------------------~ieAie~~ 211 (254)
T PRK11366 186 GAKV--VSPRLRVEARSPD--------------G--------------------------------------LVEAVSVI 211 (254)
T ss_pred HHhh--cccceEEEEEcCC--------------C--------------------------------------cEEEEEeC
Confidence 9987 9999999999988 7 99999999
Q ss_pred CCCE-EEEeccCCCCCCchh--HHHHHHHHHHHHHhhh
Q 046651 228 TRPH-YGVQFHPESIATCYG--SKILRNFREITEDYWK 262 (392)
Q Consensus 228 ~~P~-~GVQFHPEsiat~~G--~~I~~NF~~l~~~~~~ 262 (392)
++++ ||||||||+..++++ ++||+||++.++++..
T Consensus 212 ~~~~~~GVQwHPE~~~~~~~~~~~lf~~fv~~~~~~~~ 249 (254)
T PRK11366 212 NHPFALGVQWHPEWNSSEYALSRILFEGFITACQHHIA 249 (254)
T ss_pred CCCCEEEEEeCCCcCCCCCchHHHHHHHHHHHHHHHHH
Confidence 9885 999999999988887 8999999999976543
|
|
| >PRK13143 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.5e-27 Score=219.15 Aligned_cols=180 Identities=28% Similarity=0.331 Sum_probs=133.8
Q ss_pred cEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCC-CCchhHHHHHHHH-
Q 046651 5 VRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPAC-PEDIGICLRVLLE- 82 (392)
Q Consensus 5 ~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~-~~d~gi~~~ll~~- 82 (392)
||++|||++.++...+.++|+. .|.+++++++ .+++ ..||+||| ||++.+.. ..++....+.+++
T Consensus 1 ~~~~v~~~~~~~~~~~~~~l~~-~G~~~~~~~~----~~~~-------~~~d~iii-~G~~~~~~~~~~~~~~~~~i~~~ 67 (200)
T PRK13143 1 MMIVIIDYGVGNLRSVSKALER-AGAEVVITSD----PEEI-------LDADGIVL-PGVGAFGAAMENLSPLRDVILEA 67 (200)
T ss_pred CeEEEEECCCccHHHHHHHHHH-CCCeEEEECC----HHHH-------ccCCEEEE-CCCCCHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999998 7999988753 2343 46999999 55554432 2223334455554
Q ss_pred -cCCCCEEEEcHHHHHHHHH------------hCCeeeecCC----CceeceeEEEecCCcccccCCCCCCcceEEEeee
Q 046651 83 -CWDVPILGVCLGHQALGFV------------HGADIVHAPE----PVHGRLSEIVHNGDRLFHDIPSGQNSGFKVVRYH 145 (392)
Q Consensus 83 -~~~iPILGVCLGhQ~La~a------------~Gg~V~~ape----p~hG~~s~i~h~g~~LF~~ips~~~s~f~VvryH 145 (392)
..++||||||+|||+|+.+ +|++|.+.+. +..|..+.....+++||++++ + +.++++|
T Consensus 68 ~~~~~PilgIC~G~q~l~~~~~~g~~~~~lg~~~g~v~~~~~~~~~~~~g~~~v~~~~~~~l~~~l~-~----~~~~~~H 142 (200)
T PRK13143 68 ARSGKPFLGICLGMQLLFESSEEGGGVRGLGLFPGRVVRFPAGVKVPHMGWNTVKVVKDCPLFEGID-G----EYVYFVH 142 (200)
T ss_pred HHcCCCEEEECHHHHHHhhhhccCCCCCCcceeeEEEEEcCCCCCCCeecceEEEEcCCChhhccCC-C----cEEEEEe
Confidence 3589999999999999986 6888887654 344655433346778999984 3 5688899
Q ss_pred cceeecCCCCCCcEEEEEecCCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCcccccccccCCcceEEEEE
Q 046651 146 SLIIDADSLPKELIPIAWSNSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGIM 225 (392)
Q Consensus 146 Sl~V~~~sLP~~l~~iAwt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vmgi~ 225 (392)
++.+. +++.+.++||+++ + ..++++.
T Consensus 143 s~~~~---~~~~~~~la~~~~--------------~-------------------------------------~~~~~~~ 168 (200)
T PRK13143 143 SYYAY---PDDEDYVVATTDY--------------G-------------------------------------IEFPAAV 168 (200)
T ss_pred eeeeC---CCCcceEEEEEcC--------------C-------------------------------------CEEEEEE
Confidence 99886 5567899999976 3 0333333
Q ss_pred ecCCCEEEEeccCCCCCCchhHHHHHHHHHHHH
Q 046651 226 HSTRPHYGVQFHPESIATCYGSKILRNFREITE 258 (392)
Q Consensus 226 h~~~P~~GVQFHPEsiat~~G~~I~~NF~~l~~ 258 (392)
.+.++||+|||||+ .++.|++||+||++++.
T Consensus 169 -~~~~~~gvQfHPE~-~~~~g~~i~~~f~~~~~ 199 (200)
T PRK13143 169 -CNDNVFGTQFHPEK-SGETGLKILENFVELIK 199 (200)
T ss_pred -EcCCEEEEeCCCcc-chHHHHHHHHHHHHHHh
Confidence 35699999999999 46789999999998863
|
|
| >COG0505 CarA Carbamoylphosphate synthase small subunit [Amino acid transport and metabolism / Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.4e-27 Score=234.89 Aligned_cols=185 Identities=28% Similarity=0.397 Sum_probs=147.9
Q ss_pred ccEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHH-
Q 046651 4 FVRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLE- 82 (392)
Q Consensus 4 ~~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~- 82 (392)
..+|++||. ..++||.+.|.. -|+.++||+++.. .+|+.. ..+|||+||.|||+|... ......+++
T Consensus 179 ~~~Vv~iD~--GvK~nIlr~L~~-rg~~vtVVP~~t~-~eeIl~-----~~pDGiflSNGPGDP~~~---~~~i~~ik~l 246 (368)
T COG0505 179 GKHVVVIDF--GVKRNILRELVK-RGCRVTVVPADTS-AEEILA-----LNPDGIFLSNGPGDPAPL---DYAIETIKEL 246 (368)
T ss_pred CcEEEEEEc--CccHHHHHHHHH-CCCeEEEEcCCCC-HHHHHh-----hCCCEEEEeCCCCChhHH---HHHHHHHHHH
Confidence 468999998 789999999998 5999999999985 899887 679999999999999542 223333333
Q ss_pred -cCCCCEEEEcHHHHHHHHHhCCeeeecCCCceeceeEEEecCCcccccCCCCCCcceEEEeeecceeecCCCCCCcEEE
Q 046651 83 -CWDVPILGVCLGHQALGFVHGADIVHAPEPVHGRLSEIVHNGDRLFHDIPSGQNSGFKVVRYHSLIIDADSLPKELIPI 161 (392)
Q Consensus 83 -~~~iPILGVCLGhQ~La~a~Gg~V~~apep~hG~~s~i~h~g~~LF~~ips~~~s~f~VvryHSl~V~~~sLP~~l~~i 161 (392)
...|||+|||||||+|+.|+||+..++.-++||-+.++ +++-+++. .-..+.|.+.|+++++++..+++
T Consensus 247 ~~~~iPifGICLGHQllalA~Ga~T~KmkFGHrG~NhPV--------~dl~tgrv--~ITSQNHGyaVd~~s~~~~~~vt 316 (368)
T COG0505 247 LGTKIPIFGICLGHQLLALALGAKTYKMKFGHRGANHPV--------KDLDTGRV--YITSQNHGYAVDEDSLVETLKVT 316 (368)
T ss_pred hccCCCeEEEcHHHHHHHHhcCCceeecccCCCCCCcCc--------ccccCCeE--EEEecCCceecChhhcCCCceeE
Confidence 22679999999999999999999999999999988765 23334431 23358999999998888754344
Q ss_pred EEecCCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCcccccccccCCcceEEEEEecCCCEEEEeccCCCC
Q 046651 162 AWSNSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGIMHSTRPHYGVQFHPESI 241 (392)
Q Consensus 162 Awt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vmgi~h~~~P~~GVQFHPEsi 241 (392)
-++-. |+ .++||+|.+.|+|+||||||..
T Consensus 317 h~nln-------------Dg--------------------------------------TvEGi~h~~~P~fSVQ~HPEAs 345 (368)
T COG0505 317 HVNLN-------------DG--------------------------------------TVEGIRHKDLPAFSVQYHPEAS 345 (368)
T ss_pred EEeCC-------------CC--------------------------------------CccceecCCCceEEEccCCCCC
Confidence 33322 13 8999999999999999999998
Q ss_pred CCch-hHHHHHHHHHHHHHhh
Q 046651 242 ATCY-GSKILRNFREITEDYW 261 (392)
Q Consensus 242 at~~-G~~I~~NF~~l~~~~~ 261 (392)
.+++ -+.||+.|++++..+.
T Consensus 346 PGPhDt~ylFd~Fi~~~~~~~ 366 (368)
T COG0505 346 PGPHDTRYLFDEFIELMEAAK 366 (368)
T ss_pred CCCcccHHHHHHHHHHHHHhh
Confidence 8776 5899999999998753
|
|
| >TIGR01855 IMP_synth_hisH imidazole glycerol phosphate synthase, glutamine amidotransferase subunit | Back alignment and domain information |
|---|
Probab=99.95 E-value=6e-27 Score=216.94 Aligned_cols=176 Identities=24% Similarity=0.290 Sum_probs=135.1
Q ss_pred EEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCC-chhH--HHHHHHH-
Q 046651 7 TLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPE-DIGI--CLRVLLE- 82 (392)
Q Consensus 7 ~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~-d~gi--~~~ll~~- 82 (392)
|+|||+...|...|.+.|+. .|++++|+++++ ++ ..+|+||| ||+|++.... ++.. ...++++
T Consensus 1 ~~~~~~~~gn~~~l~~~l~~-~g~~v~v~~~~~----~l-------~~~d~lii-~G~~~~~~~~~~l~~~~~~~l~~~~ 67 (196)
T TIGR01855 1 IVIIDYGVGNLGSVKRALKR-VGAEPVVVKDSK----EA-------ELADKLIL-PGVGAFGAAMARLRENGLDLFVELV 67 (196)
T ss_pred CEEEecCCcHHHHHHHHHHH-CCCcEEEEcCHH----Hh-------ccCCEEEE-CCCCCHHHHHHHHHHcCcHHHHHHH
Confidence 58999999999999999998 799999998653 33 45999999 7888765321 1111 1233232
Q ss_pred -cCCCCEEEEcHHHHHHHHH------------hCCeeeecC---CCceeceeEEEecCCcccccCCCCCCcceEEEeeec
Q 046651 83 -CWDVPILGVCLGHQALGFV------------HGADIVHAP---EPVHGRLSEIVHNGDRLFHDIPSGQNSGFKVVRYHS 146 (392)
Q Consensus 83 -~~~iPILGVCLGhQ~La~a------------~Gg~V~~ap---ep~hG~~s~i~h~g~~LF~~ips~~~s~f~VvryHS 146 (392)
..++||||||+|||+|+.+ +|++|.+.+ .+.+|+.......+++||+++|.. +.+++||+
T Consensus 68 ~~~~~pvlGiC~G~Qll~~~~~~~~~~~glg~~~~~v~~~~~~~~~~~g~~~~~~~~~~~l~~~l~~~----~~v~~~Hs 143 (196)
T TIGR01855 68 VRLGKPVLGICLGMQLLFERSEEGGGVPGLGLIKGNVVKLEARKVPHMGWNEVHPVKESPLLNGIDEG----AYFYFVHS 143 (196)
T ss_pred HhCCCCEEEECHHHHHhhhccccCCCCCCcceeeEEEEECCCCCCCcccCeeeeeCCCChHHhCCCCC----CEEEEECe
Confidence 2489999999999999999 789998875 457777665556778899999988 99999999
Q ss_pred ceeecCCCCCCcEEEEEecCCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCcccccccccCCcceEEEEEe
Q 046651 147 LIIDADSLPKELIPIAWSNSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGIMH 226 (392)
Q Consensus 147 l~V~~~sLP~~l~~iAwt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vmgi~h 226 (392)
+.+.. .| + ..+|++++ + ..+...+
T Consensus 144 ~~v~~--~~-~-~~~a~~~~--------------g--------------------------------------~~~~~~~ 167 (196)
T TIGR01855 144 YYAVC--EE-E-AVLAYADY--------------G--------------------------------------EKFPAAV 167 (196)
T ss_pred eEecC--CC-C-cEEEEEcC--------------C--------------------------------------cEEEEEE
Confidence 99975 44 4 46777765 3 3444455
Q ss_pred cCCCEEEEeccCCCCCCchhHHHHHHHHHH
Q 046651 227 STRPHYGVQFHPESIATCYGSKILRNFREI 256 (392)
Q Consensus 227 ~~~P~~GVQFHPEsiat~~G~~I~~NF~~l 256 (392)
.++++||+|||||+. +++|++|++||+++
T Consensus 168 ~~~~i~GvQFHPE~~-~~~g~~ll~~f~~~ 196 (196)
T TIGR01855 168 QKGNIFGTQFHPEKS-GKTGLKLLENFLEL 196 (196)
T ss_pred ecCCEEEEECCCccC-cHhHHHHHHHHHhC
Confidence 778999999999985 68999999999863
|
This model represents the glutamine amidotransferase subunit (or domain, in eukaryotic systems) of imidazole glycerol phosphate synthase. This subunit catalyzes step 5 of histidine biosynthesis from PRPP. The other subunit, the cyclase, catalyzes step 6. |
| >PRK06490 glutamine amidotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.8e-26 Score=218.38 Aligned_cols=177 Identities=22% Similarity=0.260 Sum_probs=134.3
Q ss_pred CccEEEEEECCC-CchHHHHHHHHHhCCCCeEEEeCCC--CCHHHHHhhhcccCCcCEEEECCCCCCCCCCCch-hHHHH
Q 046651 3 EFVRTLLIDNYD-SYTYNIYQELSTINGVPPVVVRNDE--WTWRDICRYLYEENAFDNIVISPGPGSPACPEDI-GICLR 78 (392)
Q Consensus 3 ~~~r~LlIDnyD-SyT~nl~q~L~~v~G~~pvVV~nd~--~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~-gi~~~ 78 (392)
..||+|+|.|++ ++..+|.+.|.+ .|.++.++++.. ...+++ ..||+|||+|||+++++..++ ..+.+
T Consensus 6 ~~~~vlvi~h~~~~~~g~l~~~l~~-~g~~~~v~~~~~~~~~p~~l-------~~~dgvii~Ggp~~~~d~~~wi~~~~~ 77 (239)
T PRK06490 6 DKRPVLIVLHQERSTPGRVGQLLQE-RGYPLDIRRPRLGDPLPDTL-------EDHAGAVIFGGPMSANDPDDFIRREID 77 (239)
T ss_pred CCceEEEEecCCCCCChHHHHHHHH-CCCceEEEeccCCCCCCCcc-------cccCEEEEECCCCCCCCCchHHHHHHH
Confidence 458999999997 689999999987 799999887642 112232 569999999999999875543 22346
Q ss_pred HHHH--cCCCCEEEEcHHHHHHHHHhCCeeeecCCC--ceeceeEEEec-CCcccccCCCCCCcceEEEeeecceeecCC
Q 046651 79 VLLE--CWDVPILGVCLGHQALGFVHGADIVHAPEP--VHGRLSEIVHN-GDRLFHDIPSGQNSGFKVVRYHSLIIDADS 153 (392)
Q Consensus 79 ll~~--~~~iPILGVCLGhQ~La~a~Gg~V~~apep--~hG~~s~i~h~-g~~LF~~ips~~~s~f~VvryHSl~V~~~s 153 (392)
+|++ ..++||||||+|||+|+.++||+|.+.+.+ ..|+. .|..+ ...++.++| ..+..+|++.+ .
T Consensus 78 ~i~~~~~~~~PvLGIC~G~Qlla~alGG~V~~~~~G~~e~G~~-~i~~~~~~~~~~~~~------~~~~~~H~d~~-~-- 147 (239)
T PRK06490 78 WISVPLKENKPFLGICLGAQMLARHLGARVAPHPDGRVEIGYY-PLRPTEAGRALMHWP------EMVYHWHREGF-D-- 147 (239)
T ss_pred HHHHHHHCCCCEEEECHhHHHHHHHcCCEeecCCCCCCccceE-EeEECCCcccccCCC------CEEEEECCccc-c--
Confidence 6654 258999999999999999999999998754 45654 44433 334454443 45788999983 3
Q ss_pred CCCCcEEEEEecCCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCcccccccccCCcceEEEEEecCCCEEE
Q 046651 154 LPKELIPIAWSNSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGIMHSTRPHYG 233 (392)
Q Consensus 154 LP~~l~~iAwt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vmgi~h~~~P~~G 233 (392)
||++++++|.+++ + .+|++++. .++||
T Consensus 148 lP~~~~~LA~s~~--------------~--------------------------------------~~qa~~~~-~~v~g 174 (239)
T PRK06490 148 LPAGAELLATGDD--------------F--------------------------------------PNQAFRYG-DNAWG 174 (239)
T ss_pred CCCCCEEEEeCCC--------------C--------------------------------------CeEEEEeC-CCEEE
Confidence 9999999999887 7 78999974 47999
Q ss_pred EeccCCCCCCchhHHHHHHHHH
Q 046651 234 VQFHPESIATCYGSKILRNFRE 255 (392)
Q Consensus 234 VQFHPEsiat~~G~~I~~NF~~ 255 (392)
+|||||+. .+++++|.+
T Consensus 175 ~QfHPE~~-----~~~~~~~i~ 191 (239)
T PRK06490 175 LQFHPEVT-----RAMMHRWVV 191 (239)
T ss_pred EeeCccCC-----HHHHHHHHH
Confidence 99999983 466776654
|
|
| >cd01745 GATase1_2 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.8e-27 Score=215.42 Aligned_cols=154 Identities=25% Similarity=0.313 Sum_probs=124.4
Q ss_pred CCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCC--------------CCchhHHHH
Q 046651 13 YDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPAC--------------PEDIGICLR 78 (392)
Q Consensus 13 yDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~--------------~~d~gi~~~ 78 (392)
+|++++++.++|.. .|..+++++++.. .+++...+ ..+|+|||+|||+.... +.......+
T Consensus 17 ~~~~~~~~~~~l~~-~G~~~~iv~~~~~-~~~~~~~l---~~~dglvl~GG~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 91 (189)
T cd01745 17 RDYLNQYYVDAVRK-AGGLPVLLPPVDD-EEDLEQYL---ELLDGLLLTGGGDVDPPLYGEEPHPELGPIDPERDAFELA 91 (189)
T ss_pred HHHHHHHHHHHHHH-CCCEEEEeCCCCC-hHHHHHHH---hhCCEEEECCCCCCChhhcCCCCCcccCCCChhHHHHHHH
Confidence 56788999999998 7999999988864 45544434 57999999999975321 111123345
Q ss_pred HHHH--cCCCCEEEEcHHHHHHHHHhCCeeeecCCCceeceeEEEecCCcccccCCCCCCcceEEEeeecceeecCCCCC
Q 046651 79 VLLE--CWDVPILGVCLGHQALGFVHGADIVHAPEPVHGRLSEIVHNGDRLFHDIPSGQNSGFKVVRYHSLIIDADSLPK 156 (392)
Q Consensus 79 ll~~--~~~iPILGVCLGhQ~La~a~Gg~V~~apep~hG~~s~i~h~g~~LF~~ips~~~s~f~VvryHSl~V~~~sLP~ 156 (392)
+++. ..++||||||+|||+|+.++||+|.+.+ +|.++|++.|.. +|+
T Consensus 92 ~~~~~~~~~~PilgiC~G~Q~l~~~~Gg~v~~~~-----------------------------~v~~~H~~~v~~--~~~ 140 (189)
T cd01745 92 LLRAALERGKPILGICRGMQLLNVALGGTLYQDI-----------------------------RVNSLHHQAIKR--LAD 140 (189)
T ss_pred HHHHHHHCCCCEEEEcchHHHHHHHhCCeEEcCC-----------------------------ceechHHHHHhh--cCC
Confidence 5554 2489999999999999999999997764 377899999987 999
Q ss_pred CcEEEEEecCCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCcccccccccCCcceEEEEEecC-CCEEEEe
Q 046651 157 ELIPIAWSNSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGIMHST-RPHYGVQ 235 (392)
Q Consensus 157 ~l~~iAwt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vmgi~h~~-~P~~GVQ 235 (392)
+++++|++++ + .+||+++.+ .++||+|
T Consensus 141 ~~~vla~~~d--------------~--------------------------------------~vea~~~~~~~~~~gvQ 168 (189)
T cd01745 141 GLRVEARAPD--------------G--------------------------------------VIEAIESPDRPFVLGVQ 168 (189)
T ss_pred CCEEEEECCC--------------C--------------------------------------cEEEEEeCCCCeEEEEe
Confidence 9999999877 6 899999987 7999999
Q ss_pred ccCCCCCC--chhHHHHHHHH
Q 046651 236 FHPESIAT--CYGSKILRNFR 254 (392)
Q Consensus 236 FHPEsiat--~~G~~I~~NF~ 254 (392)
||||+..+ +.|++||+||.
T Consensus 169 fHPE~~~~~~~~~~~if~~f~ 189 (189)
T cd01745 169 WHPEWLADTDPDSLKLFEAFV 189 (189)
T ss_pred cCCCcCcccCchHhHHHHHhC
Confidence 99999888 88999999994
|
This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine |
| >PRK14004 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.1e-26 Score=212.83 Aligned_cols=178 Identities=19% Similarity=0.206 Sum_probs=129.1
Q ss_pred EEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCC----CchhHHHHHHHH
Q 046651 7 TLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACP----EDIGICLRVLLE 82 (392)
Q Consensus 7 ~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~----~d~gi~~~ll~~ 82 (392)
+.|||..-++-+++.++|.+ .+.++++++. .+++ ..+|.||+ ||+|++... ...++...+++.
T Consensus 2 i~iidyg~gNl~s~~~al~~-~~~~~~~~~~----~~~l-------~~~d~iIl-PG~g~~~~~~~~l~~~gl~~~i~~~ 68 (210)
T PRK14004 2 IAILDYGMGNIHSCLKAVSL-YTKDFVFTSD----PETI-------ENSKALIL-PGDGHFDKAMENLNSTGLRSTIDKH 68 (210)
T ss_pred EEEEECCCchHHHHHHHHHH-cCCeEEEECC----HHHh-------ccCCEEEE-CCCCchHHHHHHHHHcCcHHHHHHH
Confidence 89999999999999999988 6888876632 3454 35899885 888987431 112433333332
Q ss_pred -cCCCCEEEEcHHHHHHHHHhC------------------Ceeeec-----CCCceeceeEEE--ecCCcccccCCCCCC
Q 046651 83 -CWDVPILGVCLGHQALGFVHG------------------ADIVHA-----PEPVHGRLSEIV--HNGDRLFHDIPSGQN 136 (392)
Q Consensus 83 -~~~iPILGVCLGhQ~La~a~G------------------g~V~~a-----pep~hG~~s~i~--h~g~~LF~~ips~~~ 136 (392)
..++||||||+|||+|+.+.+ ++|.+. +-|+.|+..... .++++||+++|..
T Consensus 69 ~~~~~pilGiC~G~Q~l~~~~~e~~~~~~~~~~~Glg~~~~~v~~~~~~~~~~ph~Gw~~v~~~~~~~~~lf~~l~~~-- 146 (210)
T PRK14004 69 VESGKPLFGICIGFQILFESSEETNQGTKKEQIEGLGYIKGKIKKFEGKDFKVPHIGWNRLQIRRKDKSKLLKGIGDQ-- 146 (210)
T ss_pred HHcCCCEEEECHhHHHHHHhcccccCCCcCcccCCcceeEEEEEEcCCCCCcCCccCcccceeccCCCCccccCCCCC--
Confidence 359999999999999999753 666653 346788875432 2577899999988
Q ss_pred cceEEEeeecceeecCCCCCCcEEEEEecCCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCcccccccccC
Q 046651 137 SGFKVVRYHSLIIDADSLPKELIPIAWSNSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRM 216 (392)
Q Consensus 137 s~f~VvryHSl~V~~~sLP~~l~~iAwt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 216 (392)
+.|++|||+.++ .++.+..++++.+. +
T Consensus 147 --~~v~~~HS~~~~---~~~~l~~sa~~~~~-------------g----------------------------------- 173 (210)
T PRK14004 147 --SFFYFIHSYRPT---GAEGNAITGLCDYY-------------Q----------------------------------- 173 (210)
T ss_pred --CEEEEeceeecC---CCCcceEEEeeeEC-------------C-----------------------------------
Confidence 999999999653 23445556665441 1
Q ss_pred CcceEEEEEecCCCEEEEeccCCCCCCchhHHHHHHHHHH
Q 046651 217 RREVLMGIMHSTRPHYGVQFHPESIATCYGSKILRNFREI 256 (392)
Q Consensus 217 ~~~~vmgi~h~~~P~~GVQFHPEsiat~~G~~I~~NF~~l 256 (392)
..++++. .+.++||+|||||+.. ++|.+|++||+++
T Consensus 174 --~~~~a~~-~~~~i~GvQFHPE~s~-~~G~~iL~nfl~~ 209 (210)
T PRK14004 174 --EKFPAVV-EKENIFGTQFHPEKSH-THGLKLLENFIEF 209 (210)
T ss_pred --EEEEEEE-ecCCEEEEeCCcccCc-hhHHHHHHHHHhh
Confidence 1344444 7889999999999977 6999999999875
|
|
| >cd01741 GATase1_1 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain | Back alignment and domain information |
|---|
Probab=99.93 E-value=2e-25 Score=203.75 Aligned_cols=175 Identities=26% Similarity=0.358 Sum_probs=134.8
Q ss_pred EEEEEECCCCc-hHHHHHHHHHhCC---CCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCC-CCC-CchhHHHHH
Q 046651 6 RTLLIDNYDSY-TYNIYQELSTING---VPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSP-ACP-EDIGICLRV 79 (392)
Q Consensus 6 r~LlIDnyDSy-T~nl~q~L~~v~G---~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp-~~~-~d~gi~~~l 79 (392)
|++||++.+.- ..++.++|+. .| .++++++.+.... . .+...||+|||+|||.++ ... ..+....++
T Consensus 1 ~i~il~~~~~~~~~~~~~~l~~-~g~~~~~~~~~~~~~~~~---~---~~~~~~dgvil~Gg~~~~~~~~~~~~~~~~~~ 73 (188)
T cd01741 1 RILILQHDTPEGPGLFEDLLRE-AGAETIEIDVVDVYAGEL---L---PDLDDYDGLVILGGPMSVDEDDYPWLKKLKEL 73 (188)
T ss_pred CEEEEECCCCCCcchHHHHHHh-cCCCCceEEEEecCCCCC---C---CCcccCCEEEECCCCccCCccCChHHHHHHHH
Confidence 57888776543 4567777777 67 6888888776532 1 122679999999999988 322 223344556
Q ss_pred HHH--cCCCCEEEEcHHHHHHHHHhCCeeeecCCC-ceeceeEEEec----CCcccccCCCCCCcceEEEeeecceeecC
Q 046651 80 LLE--CWDVPILGVCLGHQALGFVHGADIVHAPEP-VHGRLSEIVHN----GDRLFHDIPSGQNSGFKVVRYHSLIIDAD 152 (392)
Q Consensus 80 l~~--~~~iPILGVCLGhQ~La~a~Gg~V~~apep-~hG~~s~i~h~----g~~LF~~ips~~~s~f~VvryHSl~V~~~ 152 (392)
|++ ..++|+||||+|||+|+.++||+|.+.+.. ..|. ..+..+ ...+|+++|.. +.+.++|++.|..
T Consensus 74 i~~~~~~~~pilgiC~G~q~l~~~lGG~v~~~~~~~~~g~-~~v~~~~~~~~~~l~~~~~~~----~~v~~~H~~~v~~- 147 (188)
T cd01741 74 IRQALAAGKPVLGICLGHQLLARALGGKVGRNPKGWEIGW-FPVTLTEAGKADPLFAGLPDE----FPVFHWHGDTVVE- 147 (188)
T ss_pred HHHHHHCCCCEEEECccHHHHHHHhCCEEecCCCcceeEE-EEEEeccccccCchhhcCCCc----ceEEEEeccChhh-
Confidence 655 258999999999999999999999999876 4554 444432 35688888877 9999999999987
Q ss_pred CCCCCcEEEEEecCCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCcccccccccCCcceEEEEEecCCCEE
Q 046651 153 SLPKELIPIAWSNSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGIMHSTRPHY 232 (392)
Q Consensus 153 sLP~~l~~iAwt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vmgi~h~~~P~~ 232 (392)
||++++++|++++ + .++++++. .++|
T Consensus 148 -lp~~~~~la~~~~--------------~--------------------------------------~v~~~~~~-~~~~ 173 (188)
T cd01741 148 -LPPGAVLLASSEA--------------C--------------------------------------PNQAFRYG-DRAL 173 (188)
T ss_pred -CCCCCEEeecCCC--------------C--------------------------------------CcceEEec-CCEE
Confidence 9999999999987 6 78999875 7899
Q ss_pred EEeccCCCCCCchhHHHHHHHH
Q 046651 233 GVQFHPESIATCYGSKILRNFR 254 (392)
Q Consensus 233 GVQFHPEsiat~~G~~I~~NF~ 254 (392)
|+||||| .+|++||+
T Consensus 174 g~QfHPE-------~~~~~~f~ 188 (188)
T cd01741 174 GLQFHPE-------ERLLRNFL 188 (188)
T ss_pred EEccCch-------HHHHhhhC
Confidence 9999999 79999984
|
This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine |
| >PRK09065 glutamine amidotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.2e-25 Score=212.64 Aligned_cols=173 Identities=25% Similarity=0.337 Sum_probs=131.1
Q ss_pred ECCCCchHHHHHHHHHhCCCCeEEEeCCCCC-HHHHHhhhcccCCcCEEEECCCCCCCCCCCch-hHHHHHHHH--cCCC
Q 046651 11 DNYDSYTYNIYQELSTINGVPPVVVRNDEWT-WRDICRYLYEENAFDNIVISPGPGSPACPEDI-GICLRVLLE--CWDV 86 (392)
Q Consensus 11 DnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~-~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~-gi~~~ll~~--~~~i 86 (392)
++|++|...+.+.+.. .|.+..+++..+.. ..++ ..||+|||+|||.+.++...+ .-+.++|++ ..++
T Consensus 18 ~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~p~~-------~~~dgvvi~Gg~~~~~d~~~w~~~~~~~i~~~~~~~~ 89 (237)
T PRK09065 18 ARYGDFPHWIRVALGL-AEQPVVVVRVFAGEPLPAP-------DDFAGVIITGSWAMVTDRLDWSERTADWLRQAAAAGM 89 (237)
T ss_pred hhcCCHHHHHHHHhcc-CCceEEEEeccCCCCCCCh-------hhcCEEEEeCCCcccCCCchhHHHHHHHHHHHHHCCC
Confidence 4567777777777765 68888877666531 1122 569999999999987664322 334555655 2489
Q ss_pred CEEEEcHHHHHHHHHhCCeeeecCC-CceeceeEEEec---CCcccccCCCCCCcceEEEeeecceeecCCCCCCcEEEE
Q 046651 87 PILGVCLGHQALGFVHGADIVHAPE-PVHGRLSEIVHN---GDRLFHDIPSGQNSGFKVVRYHSLIIDADSLPKELIPIA 162 (392)
Q Consensus 87 PILGVCLGhQ~La~a~Gg~V~~ape-p~hG~~s~i~h~---g~~LF~~ips~~~s~f~VvryHSl~V~~~sLP~~l~~iA 162 (392)
||||||+|||+|+.++||+|.+.+. .++|......+. .++||.++|.. |.|..+|++.|.. ||++++++|
T Consensus 90 PvlGIC~G~Qlla~alGg~V~~~~~g~e~G~~~v~~~~~~~~~~l~~~~~~~----~~v~~~H~d~v~~--lp~~~~~la 163 (237)
T PRK09065 90 PLLGICYGHQLLAHALGGEVGYNPAGRESGTVTVELHPAAADDPLFAGLPAQ----FPAHLTHLQSVLR--LPPGAVVLA 163 (237)
T ss_pred CEEEEChhHHHHHHHcCCccccCCCCCccceEEEEEccccccChhhhcCCcc----CcEeeehhhhhhh--CCCCCEEEE
Confidence 9999999999999999999999876 456765433232 46799999887 9999999999987 999999999
Q ss_pred EecCCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCcccccccccCCcceEEEEEecCCCEEEEeccCCCCC
Q 046651 163 WSNSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGIMHSTRPHYGVQFHPESIA 242 (392)
Q Consensus 163 wt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vmgi~h~~~P~~GVQFHPEsia 242 (392)
.+++ + .++|+++.+ ++||+|||||.
T Consensus 164 ~s~~--------------~--------------------------------------~iqa~~~~~-~i~gvQfHPE~-- 188 (237)
T PRK09065 164 RSAQ--------------D--------------------------------------PHQAFRYGP-HAWGVQFHPEF-- 188 (237)
T ss_pred cCCC--------------C--------------------------------------CeeEEEeCC-CEEEEEeCCcC--
Confidence 9887 6 789999865 69999999997
Q ss_pred CchhHHHHHHHHH
Q 046651 243 TCYGSKILRNFRE 255 (392)
Q Consensus 243 t~~G~~I~~NF~~ 255 (392)
...+++++++
T Consensus 189 ---~~~~~~~~~~ 198 (237)
T PRK09065 189 ---TAHIMRAYLR 198 (237)
T ss_pred ---CHHHHHHHHH
Confidence 2456666655
|
|
| >COG0118 HisH Glutamine amidotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.9e-25 Score=205.14 Aligned_cols=180 Identities=26% Similarity=0.349 Sum_probs=137.0
Q ss_pred ccEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCC-C---CchhHHHHH
Q 046651 4 FVRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPAC-P---EDIGICLRV 79 (392)
Q Consensus 4 ~~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~-~---~d~gi~~~l 79 (392)
.|+|+|||....+.+++..+|++ .|.+++|..+ .+++ ...|.||+ ||-|+... . ...++ .+.
T Consensus 1 m~~i~IIDyg~GNL~Sv~~Aler-~G~~~~vs~d----~~~i-------~~AD~liL-PGVGaf~~am~~L~~~gl-~~~ 66 (204)
T COG0118 1 MMMVAIIDYGSGNLRSVKKALER-LGAEVVVSRD----PEEI-------LKADKLIL-PGVGAFGAAMANLRERGL-IEA 66 (204)
T ss_pred CCEEEEEEcCcchHHHHHHHHHH-cCCeeEEecC----HHHH-------hhCCEEEe-cCCCCHHHHHHHHHhcch-HHH
Confidence 38899999998899999999999 6988876543 3555 34899999 99998653 2 22343 344
Q ss_pred HHH--cCCCCEEEEcHHHHHHHHH------------hCCeeeecC-----CCceeceeEEEecCCcccccCCCCCCcceE
Q 046651 80 LLE--CWDVPILGVCLGHQALGFV------------HGADIVHAP-----EPVHGRLSEIVHNGDRLFHDIPSGQNSGFK 140 (392)
Q Consensus 80 l~~--~~~iPILGVCLGhQ~La~a------------~Gg~V~~ap-----ep~hG~~s~i~h~g~~LF~~ips~~~s~f~ 140 (392)
|++ ..++|+||||||||+|... ..|+|.+.+ -|+.||++....++++||++|+.+ -.
T Consensus 67 i~~~~~~~kP~LGIClGMQlLfe~SeE~~~~~GLg~i~G~V~r~~~~~~kvPHMGWN~l~~~~~~~l~~gi~~~----~~ 142 (204)
T COG0118 67 IKEAVESGKPFLGICLGMQLLFERSEEGGGVKGLGLIPGKVVRFPAEDLKVPHMGWNQVEFVRGHPLFKGIPDG----AY 142 (204)
T ss_pred HHHHHhcCCCEEEEeHhHHhhhhcccccCCCCCcceecceEEEcCCCCCCCCccccceeeccCCChhhcCCCCC----CE
Confidence 444 2369999999999999985 236777654 478999987555889999999997 57
Q ss_pred EEeeecceeecCCCCCCcEEEEEecCCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCcccccccccCCcce
Q 046651 141 VVRYHSLIIDADSLPKELIPIAWSNSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREV 220 (392)
Q Consensus 141 VvryHSl~V~~~sLP~~l~~iAwt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 220 (392)
+++-|||.+.+ .. .=.+++++++ + ...
T Consensus 143 ~YFVHSY~~~~--~~-~~~v~~~~~Y--------------G------------------------------------~~f 169 (204)
T COG0118 143 FYFVHSYYVPP--GN-PETVVATTDY--------------G------------------------------------EPF 169 (204)
T ss_pred EEEEEEEeecC--CC-CceEEEeccC--------------C------------------------------------Cee
Confidence 88899999985 22 2345788877 4 115
Q ss_pred EEEEEecCCCEEEEeccCCCCCCchhHHHHHHHHHHH
Q 046651 221 LMGIMHSTRPHYGVQFHPESIATCYGSKILRNFREIT 257 (392)
Q Consensus 221 vmgi~h~~~P~~GVQFHPEsiat~~G~~I~~NF~~l~ 257 (392)
..++. ..+++|+|||||+ +...|.+|++||+++.
T Consensus 170 ~AaV~--k~N~~g~QFHPEK-Sg~~Gl~lL~NFl~~~ 203 (204)
T COG0118 170 PAAVA--KDNVFGTQFHPEK-SGKAGLKLLKNFLEWI 203 (204)
T ss_pred EEEEE--eCCEEEEecCccc-chHHHHHHHHHHHhhc
Confidence 56664 4589999999999 7789999999999864
|
|
| >PRK07567 glutamine amidotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.4e-24 Score=206.20 Aligned_cols=170 Identities=22% Similarity=0.304 Sum_probs=124.2
Q ss_pred cE-EEEEECCCCch---HHHHHHHHHhCCCC---eEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCC--chhH
Q 046651 5 VR-TLLIDNYDSYT---YNIYQELSTINGVP---PVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPE--DIGI 75 (392)
Q Consensus 5 ~r-~LlIDnyDSyT---~nl~q~L~~v~G~~---pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~--d~gi 75 (392)
|| +||+.+.+.-. -.+.+.+.+ .|.. ..+++.+....... +...||+|||+|||+++++.. +..+
T Consensus 1 m~~ililq~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-----~~~~~dgvIi~Gg~~~~~d~~~~~~pw 74 (242)
T PRK07567 1 MKPFLLLSPRPEDEAADAEYAAFLRY-TGLDPAELRRIRLDREPLPDL-----DLDDYSGVIVGGSPFNVSDPAESKSPW 74 (242)
T ss_pred CCcEEEEecCCCcccccchHHHHHHh-cCCCccceEEEecccCCCCCC-----CHhhccEEEEcCCCCcCCCCCCccchH
Confidence 44 88887765432 456666766 6765 55555555421111 115699999999999998752 2221
Q ss_pred -------HHHHHHH--cCCCCEEEEcHHHHHHHHHhCCeeeecCCCceeceeEEEec----CCcccccCCCCCCcceEEE
Q 046651 76 -------CLRVLLE--CWDVPILGVCLGHQALGFVHGADIVHAPEPVHGRLSEIVHN----GDRLFHDIPSGQNSGFKVV 142 (392)
Q Consensus 76 -------~~~ll~~--~~~iPILGVCLGhQ~La~a~Gg~V~~apep~hG~~s~i~h~----g~~LF~~ips~~~s~f~Vv 142 (392)
+.++++. ..++||||||+|||+|+.++||+|.+......|.. .+..+ .++||.++|.. |++.
T Consensus 75 ~~~~~~~i~~~i~~~~~~~~PvLGIC~G~Qlla~a~GG~V~~~~g~e~G~~-~v~l~~~g~~~~l~~~~~~~----~~~~ 149 (242)
T PRK07567 75 QRRVEAELSGLLDEVVARDFPFLGACYGVGTLGHHQGGVVDRTYGEPVGAV-TVSLTDAGRADPLLAGLPDT----FTAF 149 (242)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEchhHHHHHHHcCCEEecCCCCcCccE-EEEECCccCCChhhcCCCCc----eEEE
Confidence 1233332 35899999999999999999999998444556654 33322 35799999887 9999
Q ss_pred eeecceeecCCCCCCcEEEEEecCCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCcccccccccCCcceEE
Q 046651 143 RYHSLIIDADSLPKELIPIAWSNSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLM 222 (392)
Q Consensus 143 ryHSl~V~~~sLP~~l~~iAwt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vm 222 (392)
++|++.|.. ||++++++|.+++ + .+|
T Consensus 150 ~~H~d~V~~--lp~~~~vlA~s~~--------------~--------------------------------------~vq 175 (242)
T PRK07567 150 VGHKEAVSA--LPPGAVLLATSPT--------------C--------------------------------------PVQ 175 (242)
T ss_pred eehhhhhhh--CCCCCEEEEeCCC--------------C--------------------------------------CEE
Confidence 999999987 9999999999987 6 799
Q ss_pred EEEecCCCEEEEeccCCC
Q 046651 223 GIMHSTRPHYGVQFHPES 240 (392)
Q Consensus 223 gi~h~~~P~~GVQFHPEs 240 (392)
|+++. .++||||||||.
T Consensus 176 a~~~~-~~~~gvQfHPE~ 192 (242)
T PRK07567 176 MFRVG-ENVYATQFHPEL 192 (242)
T ss_pred EEEeC-CCEEEEEeCCcC
Confidence 99975 469999999998
|
|
| >PRK05665 amidotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.2e-23 Score=201.31 Aligned_cols=185 Identities=19% Similarity=0.202 Sum_probs=129.6
Q ss_pred ccEEEEEECC----------CCchHHHHHHHHHhCCCC--eEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCC
Q 046651 4 FVRTLLIDNY----------DSYTYNIYQELSTINGVP--PVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPE 71 (392)
Q Consensus 4 ~~r~LlIDny----------DSyT~nl~q~L~~v~G~~--pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~ 71 (392)
.||++|+... +.|...+.++|.. .+.+ +.++.... .++.. +...||+|||+|||.+++...
T Consensus 2 ~mki~IL~~~~~~~~~~~~~g~~~~~~~~ll~~-~~~~~~~~~~~~~~---~~~p~---~~~~~dgiiitGs~~~v~~~~ 74 (240)
T PRK05665 2 SLRICILETDVLRPELVAQYQGYGRMFEQLFAR-QPIAAEFVVYNVVQ---GDYPA---DDEKFDAYLVTGSKADSFGTD 74 (240)
T ss_pred ceEEEEEECCCCCHHHHHHhCCHHHHHHHHHHh-CCCCceEEEEeccC---CCCCC---CcccCCEEEECCCCCCccccc
Confidence 3788888554 3344445566655 4543 33332111 11111 125699999999999987643
Q ss_pred c-hhHHHHHHHH--cCCCCEEEEcHHHHHHHHHhCCeeeecCCC-ceeceeEEEecCCcccccCCCCCCcceEEEeeecc
Q 046651 72 D-IGICLRVLLE--CWDVPILGVCLGHQALGFVHGADIVHAPEP-VHGRLSEIVHNGDRLFHDIPSGQNSGFKVVRYHSL 147 (392)
Q Consensus 72 d-~gi~~~ll~~--~~~iPILGVCLGhQ~La~a~Gg~V~~apep-~hG~~s~i~h~g~~LF~~ips~~~s~f~VvryHSl 147 (392)
. +.-+.++|++ ..++||||||+|||+|+.++||+|.+.+.+ ..|....-.....++|...|.. |.+..+|.+
T Consensus 75 pwi~~l~~~i~~~~~~~~PilGIC~GhQlla~AlGG~V~~~~~G~e~G~~~~~~~~~~~~~~~~~~~----~~~~~~H~D 150 (240)
T PRK05665 75 PWIQTLKTYLLKLYERGDKLLGVCFGHQLLALLLGGKAERASQGWGVGIHRYQLAAHAPWMSPAVTE----LTLLISHQD 150 (240)
T ss_pred hHHHHHHHHHHHHHhcCCCEEEEeHHHHHHHHHhCCEEEeCCCCcccceEEEEecCCCccccCCCCc----eEEEEEcCC
Confidence 3 2334566665 258999999999999999999999998764 3454432223455689888887 999999999
Q ss_pred eeecCCCCCCcEEEEEecCCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCcccccccccCCcceEEEEEec
Q 046651 148 IIDADSLPKELIPIAWSNSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGIMHS 227 (392)
Q Consensus 148 ~V~~~sLP~~l~~iAwt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vmgi~h~ 227 (392)
.|.. ||++++++|.++. + .+++++.
T Consensus 151 ~V~~--LP~ga~~La~s~~--------------~--------------------------------------~~q~~~~- 175 (240)
T PRK05665 151 QVTA--LPEGATVIASSDF--------------C--------------------------------------PFAAYHI- 175 (240)
T ss_pred eeee--CCCCcEEEEeCCC--------------C--------------------------------------cEEEEEe-
Confidence 9988 9999999999887 6 7888874
Q ss_pred CCCEEEEeccCCCCCCchhHHHHHHHHH
Q 046651 228 TRPHYGVQFHPESIATCYGSKILRNFRE 255 (392)
Q Consensus 228 ~~P~~GVQFHPEsiat~~G~~I~~NF~~ 255 (392)
+.++||+|||||. ..+.-+.+++.+.+
T Consensus 176 ~~~~~g~QfHPE~-~~~~~~~~l~~~~~ 202 (240)
T PRK05665 176 GDQVLCFQGHPEF-VHDYSRALLDLRQE 202 (240)
T ss_pred CCCEEEEecCCcC-cHHHHHHHHHHhhh
Confidence 5679999999998 33345666665543
|
|
| >PRK07053 glutamine amidotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.5e-23 Score=198.38 Aligned_cols=178 Identities=19% Similarity=0.206 Sum_probs=131.9
Q ss_pred cEEEEEECCCCc-hHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCc---hhHHHHHH
Q 046651 5 VRTLLIDNYDSY-TYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPED---IGICLRVL 80 (392)
Q Consensus 5 ~r~LlIDnyDSy-T~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d---~gi~~~ll 80 (392)
||+|+|.|.+.- -..|.+.|++ .|.++.+++.+..... . .+...||+|||+|||.++++... +.-..++|
T Consensus 3 ~~ilviqh~~~e~~g~i~~~L~~-~g~~~~v~~~~~~~~~--~---~~~~~~d~lii~Ggp~~~~d~~~~p~~~~~~~~i 76 (234)
T PRK07053 3 KTAVAIRHVAFEDLGSFEQVLGA-RGYRVRYVDVGVDDLE--T---LDALEPDLLVVLGGPIGVYDDELYPFLAPEIALL 76 (234)
T ss_pred ceEEEEECCCCCCChHHHHHHHH-CCCeEEEEecCCCccC--C---CCccCCCEEEECCCCCCCCCCCcCCcHHHHHHHH
Confidence 679999997654 4668888887 7999999987543110 0 11257999999999999876432 22334555
Q ss_pred HH--cCCCCEEEEcHHHHHHHHHhCCeeeecCCCceeceeEEE-ec--CCcccccCCCCCCcceEEEeeecceeecCCCC
Q 046651 81 LE--CWDVPILGVCLGHQALGFVHGADIVHAPEPVHGRLSEIV-HN--GDRLFHDIPSGQNSGFKVVRYHSLIIDADSLP 155 (392)
Q Consensus 81 ~~--~~~iPILGVCLGhQ~La~a~Gg~V~~apep~hG~~s~i~-h~--g~~LF~~ips~~~s~f~VvryHSl~V~~~sLP 155 (392)
++ ..++||||||+|||+|+.++||+|.+.+..+.|...... .. .+++ .++|.. +.+.++|++.++ ||
T Consensus 77 ~~~~~~~~PvlGIC~G~Qlla~alGg~V~~~~~~e~G~~~i~~t~~g~~~pl-~~~~~~----~~~~~~H~d~~~---lP 148 (234)
T PRK07053 77 RQRLAAGLPTLGICLGAQLIARALGARVYPGGQKEIGWAPLTLTDAGRASPL-RHLGAG----TPVLHWHGDTFD---LP 148 (234)
T ss_pred HHHHHCCCCEEEECccHHHHHHHcCCcEecCCCCeEeEEEEEEeccccCChh-hcCCCc----ceEEEEeCCEEe---cC
Confidence 54 249999999999999999999999997777788754321 11 2344 467755 899999999984 99
Q ss_pred CCcEEEEEecCCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCcccccccccCCcceEEEEEecCCCEEEEe
Q 046651 156 KELIPIAWSNSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGIMHSTRPHYGVQ 235 (392)
Q Consensus 156 ~~l~~iAwt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vmgi~h~~~P~~GVQ 235 (392)
++.+.+|.++. + .+++++. ++++||+|
T Consensus 149 ~ga~~La~s~~--------------~--------------------------------------~~qaf~~-g~~~~g~Q 175 (234)
T PRK07053 149 EGATLLASTPA--------------C--------------------------------------RHQAFAW-GNHVLALQ 175 (234)
T ss_pred CCCEEEEcCCC--------------C--------------------------------------CeeEEEe-CCCEEEEe
Confidence 99999999987 6 6788985 56899999
Q ss_pred ccCCCCCCchhHHHHHHHH
Q 046651 236 FHPESIATCYGSKILRNFR 254 (392)
Q Consensus 236 FHPEsiat~~G~~I~~NF~ 254 (392)
||||... .+++.+.
T Consensus 176 fHpE~~~-----~~~~~w~ 189 (234)
T PRK07053 176 FHPEARE-----DRFEAWL 189 (234)
T ss_pred eCccCCH-----HHHHHHH
Confidence 9999722 4555554
|
|
| >PRK13525 glutamine amidotransferase subunit PdxT; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.5e-23 Score=192.14 Aligned_cols=172 Identities=17% Similarity=0.269 Sum_probs=124.8
Q ss_pred ccEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCC--CchhHHHHHHH
Q 046651 4 FVRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACP--EDIGICLRVLL 81 (392)
Q Consensus 4 ~~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~--~d~gi~~~ll~ 81 (392)
.|||+||++...|+..+ +.|.. .|++++.++.. +++ ..||+|||+||+++.... .+.. ..++++
T Consensus 1 ~m~~~i~~~~g~~~~~~-~~l~~-~g~~~~~~~~~----~~l-------~~~dgiii~GG~~~~~~~~~~~~~-~~~~i~ 66 (189)
T PRK13525 1 MMKIGVLALQGAVREHL-AALEA-LGAEAVEVRRP----EDL-------DEIDGLILPGGESTTMGKLLRDFG-LLEPLR 66 (189)
T ss_pred CCEEEEEEcccCHHHHH-HHHHH-CCCEEEEeCCh----hHh-------ccCCEEEECCCChHHHHHHHHhcc-HHHHHH
Confidence 48999999998888664 66776 79998888642 343 569999998887654321 1111 123444
Q ss_pred H--cCCCCEEEEcHHHHHHHHHhCC-----------eeeecCCC-ceeceeEEEecCCcccccCCCCCCcceEEEeeecc
Q 046651 82 E--CWDVPILGVCLGHQALGFVHGA-----------DIVHAPEP-VHGRLSEIVHNGDRLFHDIPSGQNSGFKVVRYHSL 147 (392)
Q Consensus 82 ~--~~~iPILGVCLGhQ~La~a~Gg-----------~V~~apep-~hG~~s~i~h~g~~LF~~ips~~~s~f~VvryHSl 147 (392)
+ ..++||||||+|+|+|+.++|+ +|...+.+ ..|. ...+.+|.++++. +.+..+|++
T Consensus 67 ~~~~~g~PilGIC~G~QlL~~~~gg~~~~~lg~~~~~v~~~~~g~~~g~-----~~~~~~~~~~~~~----~~~~~~H~d 137 (189)
T PRK13525 67 EFIASGLPVFGTCAGMILLAKEIEGYEQEHLGLLDITVRRNAFGRQVDS-----FEAELDIKGLGEP----FPAVFIRAP 137 (189)
T ss_pred HHHHCCCeEEEECHHHHHHHhhcccCCCCceeeEEEEEEEccCCCceee-----EEecccccCCCCC----eEEEEEeCc
Confidence 3 2489999999999999999988 44433221 1221 1234678887765 999999999
Q ss_pred eeecCCCCCCcEEEEEecCCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCcccccccccCCcceEEEEEec
Q 046651 148 IIDADSLPKELIPIAWSNSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGIMHS 227 (392)
Q Consensus 148 ~V~~~sLP~~l~~iAwt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vmgi~h~ 227 (392)
.|.. ||++++++|.++. + . .+++
T Consensus 138 ~v~~--lp~~~~vlA~~~~--------------~--------------------------------------~-~~~~-- 160 (189)
T PRK13525 138 YIEE--VGPGVEVLATVGG--------------R--------------------------------------I-VAVR-- 160 (189)
T ss_pred eeec--cCCCcEEEEEcCC--------------E--------------------------------------E-EEEE--
Confidence 9988 9999999999754 3 3 3454
Q ss_pred CCCEEEEeccCCCCCCchhHHHHHHHHHHHH
Q 046651 228 TRPHYGVQFHPESIATCYGSKILRNFREITE 258 (392)
Q Consensus 228 ~~P~~GVQFHPEsiat~~G~~I~~NF~~l~~ 258 (392)
..++||+|||||... ..+||+||.+++.
T Consensus 161 ~~~~~g~QfHPE~~~---~~~~~~~f~~~~~ 188 (189)
T PRK13525 161 QGNILATSFHPELTD---DTRVHRYFLEMVK 188 (189)
T ss_pred eCCEEEEEeCCccCC---CchHHHHHHHHhh
Confidence 358999999999844 3799999999986
|
|
| >PRK08250 glutamine amidotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.1e-23 Score=196.87 Aligned_cols=179 Identities=22% Similarity=0.255 Sum_probs=131.6
Q ss_pred cEEEEEECCCCch-HHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCC-Cch-----hHHH
Q 046651 5 VRTLLIDNYDSYT-YNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACP-EDI-----GICL 77 (392)
Q Consensus 5 ~r~LlIDnyDSyT-~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~-~d~-----gi~~ 77 (392)
||+++|-+-.--. ..+...+.+ .|.++.++..... +.+.. +...||+|||+|||.++... .+. ....
T Consensus 1 m~i~vi~h~~~e~~g~~~~~~~~-~g~~~~~~~~~~g--~~~p~---~~~~~d~vii~GGp~~~~~~~~~~p~~~~~~~~ 74 (235)
T PRK08250 1 MRVHFIIHESFEAPGAYLKWAEN-RGYDISYSRVYAG--EALPE---NADGFDLLIVMGGPQSPRTTREECPYFDSKAEQ 74 (235)
T ss_pred CeEEEEecCCCCCchHHHHHHHH-CCCeEEEEEccCC--CCCCC---CccccCEEEECCCCCChhhccccccccchHHHH
Confidence 8999998754433 345566665 7988887654331 11110 12579999999999987642 211 1234
Q ss_pred HHHHHc--CCCCEEEEcHHHHHHHHHhCCeeeecCCCceeceeEEEec----CCcccccCCCCCCcceEEEeeecceeec
Q 046651 78 RVLLEC--WDVPILGVCLGHQALGFVHGADIVHAPEPVHGRLSEIVHN----GDRLFHDIPSGQNSGFKVVRYHSLIIDA 151 (392)
Q Consensus 78 ~ll~~~--~~iPILGVCLGhQ~La~a~Gg~V~~apep~hG~~s~i~h~----g~~LF~~ips~~~s~f~VvryHSl~V~~ 151 (392)
++|+++ .++||||||+|||+|+.++||+|.+.+.+++|.. .|..+ ..+||.++|.. |.|.++|++.++
T Consensus 75 ~~i~~~~~~~~PvlGIC~G~Qlla~alGg~V~~~~~~e~G~~-~v~lt~~g~~d~l~~~~~~~----~~v~~~H~d~~~- 148 (235)
T PRK08250 75 RLINQAIKAGKAVIGVCLGAQLIGEALGAKYEHSPEKEIGYF-PITLTEAGLKDPLLSHFGST----LTVGHWHNDMPG- 148 (235)
T ss_pred HHHHHHHHcCCCEEEEChhHHHHHHHhCceeccCCCCceeEE-EEEEccccccCchhhcCCCC----cEEEEEecceec-
Confidence 566652 5999999999999999999999999988889986 44432 35699999987 999999999753
Q ss_pred CCCCCCcEEEEEecCCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCcccccccccCCcceEEEEEecCCCE
Q 046651 152 DSLPKELIPIAWSNSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGIMHSTRPH 231 (392)
Q Consensus 152 ~sLP~~l~~iAwt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vmgi~h~~~P~ 231 (392)
||++++++|.++. + .+++++. +.++
T Consensus 149 --lP~~a~~LA~s~~--------------~--------------------------------------~~qa~~~-~~~~ 173 (235)
T PRK08250 149 --LTDQAKVLATSEG--------------C--------------------------------------PRQIVQY-SNLV 173 (235)
T ss_pred --CCCCCEEEECCCC--------------C--------------------------------------CceEEEe-CCCE
Confidence 9999999999987 6 7888885 4569
Q ss_pred EEEeccCCCCCCchhHHHHHHHHH
Q 046651 232 YGVQFHPESIATCYGSKILRNFRE 255 (392)
Q Consensus 232 ~GVQFHPEsiat~~G~~I~~NF~~ 255 (392)
||+|||||. | ..+++.+++
T Consensus 174 ~g~QfHPE~--~---~~~~~~~~~ 192 (235)
T PRK08250 174 YGFQCHMEF--T---VEAVELLIA 192 (235)
T ss_pred EEEeecCcC--C---HHHHHHHHH
Confidence 999999997 2 245555544
|
|
| >PRK13527 glutamine amidotransferase subunit PdxT; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.1e-23 Score=192.38 Aligned_cols=176 Identities=19% Similarity=0.255 Sum_probs=127.4
Q ss_pred EEEEECC-CCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCC--CchhHHHHHHHH-
Q 046651 7 TLLIDNY-DSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACP--EDIGICLRVLLE- 82 (392)
Q Consensus 7 ~LlIDny-DSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~--~d~gi~~~ll~~- 82 (392)
+|++.+. +.|...+.+.++. .|.++.++..+.. +++ .+||+|||+|||+++... .+.+ ..+.|++
T Consensus 5 vl~~~~~~~e~~~~~~~~l~~-~g~~~~~~~~~~~--~~l-------~~~d~iii~GG~~~~~~~~~~~~~-~~~~i~~~ 73 (200)
T PRK13527 5 VLALQGDVEEHIDALKRALDE-LGIDGEVVEVRRP--GDL-------PDCDALIIPGGESTTIGRLMKREG-ILDEIKEK 73 (200)
T ss_pred EEEECCccHHHHHHHHHHHHh-cCCCeEEEEeCCh--HHh-------ccCCEEEECCCcHHHHHHHHhhcc-HHHHHHHH
Confidence 5555542 2234467788877 7888887776542 343 469999999998876421 1222 2344444
Q ss_pred -cCCCCEEEEcHHHHHHHHHhCC-eeeecCCCceeceeE-EEec----------CCcccccCCCCCCcceEEEeeeccee
Q 046651 83 -CWDVPILGVCLGHQALGFVHGA-DIVHAPEPVHGRLSE-IVHN----------GDRLFHDIPSGQNSGFKVVRYHSLII 149 (392)
Q Consensus 83 -~~~iPILGVCLGhQ~La~a~Gg-~V~~apep~hG~~s~-i~h~----------g~~LF~~ips~~~s~f~VvryHSl~V 149 (392)
..++||||||+|||+|+.++|+ .|...+.+.+|.... +..+ ...+|.++|+. |.+.++|++.|
T Consensus 74 ~~~~~pilGIC~G~Qll~~~~gg~~v~~~~~~~lG~~~~~v~~~~~g~~~~~~~~~~~~~~~~~~----~~~~~~H~~~v 149 (200)
T PRK13527 74 IEEGLPILGTCAGLILLAKEVGDDRVTKTEQPLLGLMDVTVKRNAFGRQRDSFEAEIDLSGLDGP----FHAVFIRAPAI 149 (200)
T ss_pred HHCCCeEEEECHHHHHHHhhhcCCccCCCCCceeeeeEEEEeeccccCccccEEEeEeccccCCc----ceEEEEccccc
Confidence 2489999999999999999998 555556667887654 3221 23468888777 99999999999
Q ss_pred ecCCCCCCcEEEEEecCCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCcccccccccCCcceEEEEEecCC
Q 046651 150 DADSLPKELIPIAWSNSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGIMHSTR 229 (392)
Q Consensus 150 ~~~sLP~~l~~iAwt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vmgi~h~~~ 229 (392)
.. +|++++++|++++ + +++++ ..
T Consensus 150 ~~--lp~~~~~la~~~~--------------~---------------------------------------~~a~~--~~ 172 (200)
T PRK13527 150 TK--VGGDVEVLAKLDD--------------R---------------------------------------IVAVE--QG 172 (200)
T ss_pred cc--cCCCeEEEEEECC--------------E---------------------------------------EEEEE--EC
Confidence 87 9999999999877 4 34664 36
Q ss_pred CEEEEeccCCCCCCchhHHHHHHHHHHH
Q 046651 230 PHYGVQFHPESIATCYGSKILRNFREIT 257 (392)
Q Consensus 230 P~~GVQFHPEsiat~~G~~I~~NF~~l~ 257 (392)
++||+|||||.. .. .+||+||++.+
T Consensus 173 ~~~g~QfHPE~~--~~-~~l~~~f~~~~ 197 (200)
T PRK13527 173 NVLATAFHPELT--DD-TRIHEYFLKKV 197 (200)
T ss_pred CEEEEEeCCCCC--CC-CHHHHHHHHHH
Confidence 899999999963 33 89999999876
|
|
| >cd01746 GATase1_CTP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.2e-24 Score=202.44 Aligned_cols=186 Identities=18% Similarity=0.189 Sum_probs=129.4
Q ss_pred EEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHH--HhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHHcCC
Q 046651 8 LLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDI--CRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLECWD 85 (392)
Q Consensus 8 LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel--~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~~~~ 85 (392)
-++|+|+|.+++|.+++.+ ++..++++..+....++. ...| ..+|+||++|||+.+.....+...... .+ .+
T Consensus 11 ~~~day~s~~~~L~~a~~~-~~~~v~~~~i~~~~~~~~~~~~~l---~~~dgivl~GG~~~~~~~~~~~~i~~~-~~-~~ 84 (235)
T cd01746 11 ELPDAYLSVLEALKHAGIA-LGVKLEIKWIDSEDLEEENAEEAL---KGADGILVPGGFGIRGVEGKILAIKYA-RE-NN 84 (235)
T ss_pred CCHHHHHHHHHHHHHHHHH-cCCeeEEEEeChhhcCccchhhhh---ccCCEEEECCCCCCcchhhHHHHHHHH-HH-CC
Confidence 3458888889999999988 677777776665433322 1233 679999999999988654333222222 22 49
Q ss_pred CCEEEEcHHHHHHHHHhCCeeeecCCCceece-----------------------------eEEEe-cCCcccccCCCCC
Q 046651 86 VPILGVCLGHQALGFVHGADIVHAPEPVHGRL-----------------------------SEIVH-NGDRLFHDIPSGQ 135 (392)
Q Consensus 86 iPILGVCLGhQ~La~a~Gg~V~~apep~hG~~-----------------------------s~i~h-~g~~LF~~ips~~ 135 (392)
+|+||||+|||+|+.++|+.+.+.+...+... ..|.. .++.|..-+...
T Consensus 85 ~PvlGIClG~Q~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rl~~h~v~i~~~s~l~~~~g~~- 163 (235)
T cd01746 85 IPFLGICLGMQLAVIEFARNVLGLPDANSTEFDPDTPHPVVDLMPEQKGVKDLGGTMRLGAYPVILKPGTLAHKYYGKD- 163 (235)
T ss_pred ceEEEEEhHHHHHHHHHHHHhcCCccCCccccCCCCCCCEEEECcccccccccCcccccCceEEEECCCChHHHHhCCC-
Confidence 99999999999999999999987654421110 11221 244443333332
Q ss_pred CcceEEEeeecceeecCC---C-CCCcEEEEEec-CCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCcccc
Q 046651 136 NSGFKVVRYHSLIIDADS---L-PKELIPIAWSN-SADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHS 210 (392)
Q Consensus 136 ~s~f~VvryHSl~V~~~s---L-P~~l~~iAwt~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 210 (392)
...+..+|++.|+++. + .+++.++||+. + +
T Consensus 164 --~~~~n~~H~~~v~~~~~~~~~~~~l~v~a~~~dd--------------g----------------------------- 198 (235)
T cd01746 164 --EVEERHRHRYEVNPEYVDELEEAGLRFSGTDPDG--------------G----------------------------- 198 (235)
T ss_pred --EEEEecCcccccCHHHHHHHhhCCeEEEEEeCCC--------------C-----------------------------
Confidence 1466788999986532 2 67899999997 4 6
Q ss_pred cccccCCcceEEEEEecCCCEE-EEeccCCCCCCch-hHHHHHHHH
Q 046651 211 IYSNRMRREVLMGIMHSTRPHY-GVQFHPESIATCY-GSKILRNFR 254 (392)
Q Consensus 211 ~~~~~~~~~~vmgi~h~~~P~~-GVQFHPEsiat~~-G~~I~~NF~ 254 (392)
+|+|+++.+.|+| |||||||..+... .+.||++|.
T Consensus 199 ---------~ieaie~~~~pf~lgvQ~HPE~~~~~~~~~~lF~~fv 235 (235)
T cd01746 199 ---------LVEIVELPDHPFFVGTQFHPEFKSRPLKPHPLFVGFV 235 (235)
T ss_pred ---------eEEEEEcCCCCcEEEEECCCCCcCCCCCccHHHHHhC
Confidence 9999999999988 9999999866433 478999984
|
Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase (CTP). CTP is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. CTPs produce CTP from UTP and glutamine and regulate intracellular CTP levels through interactions with four ribonucleotide triphosphates. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. CTP is derived form UTP in three separate steps involving two active sites. In one active site, the UTP O4 oxygen is activated by Mg-ATP-dependent phosphorylation, followed by displacement of the resulting 4-phosphate moiety by ammonia. At a separate site, ammonia is generated via rate limiting glutamine hydrolysis (glutaminase) activity. A gated channel that spans between the glutamine hydrolysis and amidoligase active sites provides a path for ammonia diffusion. CTPs belong to th |
| >cd01747 GATase1_Glutamyl_Hydrolase Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.4e-23 Score=199.82 Aligned_cols=174 Identities=16% Similarity=0.201 Sum_probs=123.2
Q ss_pred HHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHH---c----CCCCEEEEc
Q 046651 20 IYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLE---C----WDVPILGVC 92 (392)
Q Consensus 20 l~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~---~----~~iPILGVC 92 (392)
.++.+.. .|..+++|..+.. .+++..+| ..+||||++|||.+............+++. . ..+||||||
T Consensus 25 Yv~~l~~-aG~~vvpi~~~~~-~~~l~~~l---~~~dG~l~~Gg~~~~~~~~~~~~~~~l~~~a~~~~~~g~~~Pv~GiC 99 (273)
T cd01747 25 YVKFLES-AGARVVPIWINES-EEYYDKLF---KSINGILFPGGAVDIDTSGYARTAKIIYNLALERNDAGDYFPVWGTC 99 (273)
T ss_pred HHHHHHH-CCCeEEEEEeCCc-HHHHHHHH---hhCCEEEECCCCCcCCccccchHHHHHHHHHHHhhhcCCCCcEEEEc
Confidence 5567766 7999888887742 45665555 679999998887555422222222222222 1 149999999
Q ss_pred HHHHHHHHHhCCeeee-cCCCceeceeEEEec----CCcccccCCCCC----CcceEEEeeecceeecCCCC------CC
Q 046651 93 LGHQALGFVHGADIVH-APEPVHGRLSEIVHN----GDRLFHDIPSGQ----NSGFKVVRYHSLIIDADSLP------KE 157 (392)
Q Consensus 93 LGhQ~La~a~Gg~V~~-apep~hG~~s~i~h~----g~~LF~~ips~~----~s~f~VvryHSl~V~~~sLP------~~ 157 (392)
||||+|+.++|+++.. .+.+.+|....+... .++||+++|... .....+.++|+++|+++++| +.
T Consensus 100 lG~QlL~~~~gg~~~~~~~~~~~~~~~~l~~t~~~~~s~lF~~~p~~l~~~l~~~~~~~~~Hs~~v~~~~~~~~~~l~~~ 179 (273)
T cd01747 100 LGFELLTYLTSGETLLLEATEATNSALPLNFTEDALQSRLFKRFPPDLLKSLATEPLTMNNHRYGISPENFTENGLLSDF 179 (273)
T ss_pred HHHHHHHHHhCCCccccCCCccccceEEEEEccccccChhhhcCCHHHHHHHhcccHHHhhcccccCHhhcccccccccc
Confidence 9999999999998654 556678876676654 478999998731 01145789999999876665 35
Q ss_pred cEEEEEecCCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCcccccccccCCcceEEEEEecCCCEEEEecc
Q 046651 158 LIPIAWSNSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGIMHSTRPHYGVQFH 237 (392)
Q Consensus 158 l~~iAwt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vmgi~h~~~P~~GVQFH 237 (392)
+.++|++.+.. + ...+|+++|.+.|+||+|||
T Consensus 180 ~~vla~~~d~~------------g------------------------------------~~fis~ie~~~~pi~gvQFH 211 (273)
T cd01747 180 FNVLTTNDDWN------------G------------------------------------VEFISTVEAYKYPIYGVQWH 211 (273)
T ss_pred eEEEEEEecCC------------C------------------------------------ceEEEEEEecCCceEEEecC
Confidence 68888876511 1 22799999999999999999
Q ss_pred CCCCCCchh
Q 046651 238 PESIATCYG 246 (392)
Q Consensus 238 PEsiat~~G 246 (392)
||+..++++
T Consensus 212 PEks~few~ 220 (273)
T cd01747 212 PEKNAFEWK 220 (273)
T ss_pred CCccccccc
Confidence 999877665
|
Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase. gamma-Glutamyl Hydrolase catalyzes the cleavage of the gamma-glutamyl chain of folylpoly-gamma-glutamyl substrates and is a central enzyme in folyl and antifolyl poly-gamma-glutamate metabolism. GATase activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. gamma-Glutamyl hydrolases belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site. |
| >KOG1622 consensus GMP synthase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.2e-22 Score=205.38 Aligned_cols=189 Identities=24% Similarity=0.365 Sum_probs=155.8
Q ss_pred cEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHHcC
Q 046651 5 VRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLECW 84 (392)
Q Consensus 5 ~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~~~ 84 (392)
=+|||+|.+.+|+.-|-+.+++ +-+.-.+++-+.+ ...+.. ..|-+|||||||-|.+......+ ...+.++
T Consensus 17 d~i~iLD~GaQY~~~I~RrvRe-l~v~se~~p~~t~-~~~i~~-----~~~rgiIiSGGP~SVya~dAP~~-dp~if~~- 87 (552)
T KOG1622|consen 17 DTILILDFGAQYGKVIDRRVRE-LNVQSEILPLTTP-AKTITE-----YGPRGIIISGGPNSVYAEDAPSF-DPAIFEL- 87 (552)
T ss_pred ceEEEEeccchhhHHHHHHHHH-HhhhhhhccCCCh-hhhhhc-----CCceEEEEeCCCCccccCcCCCC-ChhHhcc-
Confidence 3799999999999888888888 4666777777665 566654 57999999999999887543222 2233445
Q ss_pred CCCEEEEcHHHHHHHHHhCCeeeecCCCceeceeEEEecCCcccccCCCCCCcceEEEeeecceeecCCCCCCcEEEEEe
Q 046651 85 DVPILGVCLGHQALGFVHGADIVHAPEPVHGRLSEIVHNGDRLFHDIPSGQNSGFKVVRYHSLIIDADSLPKELIPIAWS 164 (392)
Q Consensus 85 ~iPILGVCLGhQ~La~a~Gg~V~~apep~hG~~s~i~h~g~~LF~~ips~~~s~f~VvryHSl~V~~~sLP~~l~~iAwt 164 (392)
++||||||.|||+|+..+|+.|.+-..-+.|.......+.+.||.++-+..- ..|..-|++.+.. +|+++.++||+
T Consensus 88 ~vpvLGICYGmQ~i~~~~Gg~V~~~~~RE~G~~eI~v~~~~~lF~~~~~~~~--~~VlltHgdsl~~--v~~g~kv~a~s 163 (552)
T KOG1622|consen 88 GVPVLGICYGMQLINKLNGGTVVKGMVREDGEDEIEVDDSVDLFSGLHKTEF--MTVLLTHGDSLSK--VPEGFKVVAFS 163 (552)
T ss_pred CCcceeehhHHHHHHHHhCCccccccccCCCCceEEcCchhhhhhhhcccce--eeeeeccccchhh--ccccceeEEee
Confidence 8999999999999999999999998888888765544567789999877621 2488999999998 99999999999
Q ss_pred cCCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCcccccccccCCcceEEEEEecCCCEEEEeccCCCCCCc
Q 046651 165 NSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGIMHSTRPHYGVQFHPESIATC 244 (392)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vmgi~h~~~P~~GVQFHPEsiat~ 244 (392)
.. . .+.+|.+..+++||+|||||-.+|.
T Consensus 164 ~n--------------~--------------------------------------~va~i~~e~kkiyglqfhpEV~~t~ 191 (552)
T KOG1622|consen 164 GN--------------K--------------------------------------PVAGILNELKKIYGLQFHPEVTLTP 191 (552)
T ss_pred cC--------------c--------------------------------------ceeeehhhhhhhhcCCCCCcccccC
Confidence 76 3 6899999999999999999999999
Q ss_pred hhHHHHHHHH-HHHH
Q 046651 245 YGSKILRNFR-EITE 258 (392)
Q Consensus 245 ~G~~I~~NF~-~l~~ 258 (392)
.|.+|++||+ ++|.
T Consensus 192 ~g~~ll~nFl~~vc~ 206 (552)
T KOG1622|consen 192 NGKELLKNFLFDVCG 206 (552)
T ss_pred chhHHHHHHHHHHcC
Confidence 9999999999 7763
|
|
| >PRK13142 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.4e-21 Score=181.78 Aligned_cols=167 Identities=23% Similarity=0.325 Sum_probs=114.1
Q ss_pred EEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCC----CchhHHHHHHHH
Q 046651 7 TLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACP----EDIGICLRVLLE 82 (392)
Q Consensus 7 ~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~----~d~gi~~~ll~~ 82 (392)
+.|||...++..++.++|.+ .|++++++++. +++ ..+|+||| ||+|++... .+.++ .+.|++
T Consensus 2 i~iidyg~gN~~s~~~al~~-~g~~~~~v~~~----~~l-------~~~D~lIl-PG~g~~~~~~~~L~~~gl-~~~i~~ 67 (192)
T PRK13142 2 IVIVDYGLGNISNVKRAIEH-LGYEVVVSNTS----KII-------DQAETIIL-PGVGHFKDAMSEIKRLNL-NAILAK 67 (192)
T ss_pred EEEEEcCCccHHHHHHHHHH-cCCCEEEEeCH----HHh-------ccCCEEEE-CCCCCHHHHHHHHHHCCc-HHHHHH
Confidence 88999999999999999998 79999988644 454 45899977 999987531 11232 344444
Q ss_pred cCCCCEEEEcHHHHHHHHHh--C---------CeeeecCC----CceeceeEEEecCCcccccCCCCCCcceEEEeeecc
Q 046651 83 CWDVPILGVCLGHQALGFVH--G---------ADIVHAPE----PVHGRLSEIVHNGDRLFHDIPSGQNSGFKVVRYHSL 147 (392)
Q Consensus 83 ~~~iPILGVCLGhQ~La~a~--G---------g~V~~ape----p~hG~~s~i~h~g~~LF~~ips~~~s~f~VvryHSl 147 (392)
..++||||||+|||+|+... | ++|.+.+. |..|+... . ...+||+ ..+++.||+
T Consensus 68 ~~g~PvlGIClGmQlL~~~~~eg~~~GLgll~~~V~rf~~~~~vph~GWn~~-~-~~~~l~~---------~~~yFVhSy 136 (192)
T PRK13142 68 NTDKKMIGICLGMQLMYEHSDEGDASGLGFIPGNISRIQTEYPVPHLGWNNL-V-SKHPMLN---------QDVYFVHSY 136 (192)
T ss_pred hCCCeEEEECHHHHHHhhhcccCCcCccCceeEEEEECCCCCCCCccccccc-C-CCCcccc---------cEEEEECCC
Confidence 45899999999999999975 2 23333321 22233221 0 0123332 247899999
Q ss_pred eeecCCCCCCcEEEEEecCCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCcccccccccCCcceEEEEEec
Q 046651 148 IIDADSLPKELIPIAWSNSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGIMHS 227 (392)
Q Consensus 148 ~V~~~sLP~~l~~iAwt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vmgi~h~ 227 (392)
.+. .++ .++++++. + ...+.++ .
T Consensus 137 ~v~---~~~--~v~~~~~y--------------g------------------------------------~~~~~~v--~ 159 (192)
T PRK13142 137 QAP---MSE--NVIAYAQY--------------G------------------------------------ADIPAIV--Q 159 (192)
T ss_pred eEC---CCC--CEEEEEEC--------------C------------------------------------CeEEEEE--E
Confidence 993 233 45677766 3 0145555 4
Q ss_pred CCCEEEEeccCCCCCCchhHHHHHHHHHH
Q 046651 228 TRPHYGVQFHPESIATCYGSKILRNFREI 256 (392)
Q Consensus 228 ~~P~~GVQFHPEsiat~~G~~I~~NF~~l 256 (392)
..++||+|||||+ +...|.+|++||++.
T Consensus 160 ~~n~~g~QFHPEk-S~~~G~~ll~nf~~~ 187 (192)
T PRK13142 160 FNNYIGIQFHPEK-SGTYGLQILRQAIQG 187 (192)
T ss_pred cCCEEEEecCccc-CcHhHHHHHHHHHhc
Confidence 6789999999999 678999999999863
|
|
| >TIGR01737 FGAM_synth_I phosphoribosylformylglycinamidine synthase I | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.7e-21 Score=181.67 Aligned_cols=201 Identities=15% Similarity=0.182 Sum_probs=130.9
Q ss_pred cEEEEEECCCCch-HHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCC-----CCchhHHHH
Q 046651 5 VRTLLIDNYDSYT-YNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPAC-----PEDIGICLR 78 (392)
Q Consensus 5 ~r~LlIDnyDSyT-~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~-----~~d~gi~~~ 78 (392)
|||+||+...++. ..+++.|++ .|++++++..++.. + ..+|+|||+||+..-.. ........+
T Consensus 1 ~~v~Vl~~~G~n~~~~~~~al~~-~G~~~~~i~~~~~~---l-------~~~d~lilpGG~~~~d~~~~~~~~~~~~~~~ 69 (227)
T TIGR01737 1 MKVAVIRFPGTNCDRDTVYALRL-LGVDAEIVWYEDGS---L-------PDYDGVVLPGGFSYGDYLRAGAIAAASPIMQ 69 (227)
T ss_pred CeEEEEeCCCcCcHHHHHHHHHH-CCCeEEEEecCCCC---C-------CCCCEEEECCCCcccccccccchhcchHHHH
Confidence 7999999998874 678999998 79999888765432 2 46999999888642111 111122344
Q ss_pred HHHH--cCCCCEEEEcHHHHHHHHH--hCCeeeecCCCceec--eeE-EEecCCcccccCCCCCCcceEEEeee---cce
Q 046651 79 VLLE--CWDVPILGVCLGHQALGFV--HGADIVHAPEPVHGR--LSE-IVHNGDRLFHDIPSGQNSGFKVVRYH---SLI 148 (392)
Q Consensus 79 ll~~--~~~iPILGVCLGhQ~La~a--~Gg~V~~apep~hG~--~s~-i~h~g~~LF~~ips~~~s~f~VvryH---Sl~ 148 (392)
++++ ..++||||||.|+|+|+.+ +++.+.+.....++. ... +..+.+.+|++++.+.. +.+--.| .+.
T Consensus 70 ~l~~~~~~g~pvlgIC~G~QlLa~~GlL~G~l~~n~~~~~~~~~~~~~v~~~~~~~~~~~~~g~~--~~~pi~H~eG~y~ 147 (227)
T TIGR01737 70 EVREFAEKGVPVLGICNGFQILVEAGLLPGALLPNDSLRFICRWVYLRVENADTIFTKNYKKGEV--IRIPIAHGEGRYY 147 (227)
T ss_pred HHHHHHHcCCEEEEECHHHHHHHHcCCCCCceeecCCCceEEEeEEEEECCCCChhhccCCCCCE--EEEEeEcCCcCeE
Confidence 4544 3589999999999999996 888888876665543 222 22345788899986521 2221123 444
Q ss_pred eecCC---CCCC-cEEEEEecCCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCcccccccccCCcceEEEE
Q 046651 149 IDADS---LPKE-LIPIAWSNSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGI 224 (392)
Q Consensus 149 V~~~s---LP~~-l~~iAwt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vmgi 224 (392)
++++. |.+. .+.+-+.+. + + +...-.||+++ ...||||
T Consensus 148 ~~~~~l~~l~~~~~i~~~y~d~-~------------g--------~~~~~~npngs-----------------~~~i~~i 189 (227)
T TIGR01737 148 ADDETLARLESNDQVVFRYCDE-D------------G--------DVAEEANPNGS-----------------VGNIAGI 189 (227)
T ss_pred cCHHHHHHHHHCCcEEEEEECC-C------------C--------CCCCCCCCCCC-----------------HHHHccc
Confidence 44321 3333 333333332 1 1 00111222222 2389999
Q ss_pred EecCCCEEEEeccCCCC-----CCchhHHHHHHHHHH
Q 046651 225 MHSTRPHYGVQFHPESI-----ATCYGSKILRNFREI 256 (392)
Q Consensus 225 ~h~~~P~~GVQFHPEsi-----at~~G~~I~~NF~~l 256 (392)
.|.+.+++|+|||||++ .|++|.+||+||++.
T Consensus 190 ~~~~~~~~g~~~HpE~~~~~~~~~~~g~~~~~~~~~~ 226 (227)
T TIGR01737 190 VNERGNVLGMMPHPERASEKLLGGDDGLKLFESLVEW 226 (227)
T ss_pred CCCCCCEEEEecCchhhcccccCCcccHHHHHHHHhh
Confidence 99999999999999998 589999999999753
|
In some species, phosphoribosylformylglycinamidine synthase is composed of a single polypeptide chain. This model describes the PurQ protein of Bacillus subtilis (where PurL, PurQ, and PurS are required for phosphoribosylformylglycinamidine synthase activity) and functionally equivalent proteins from other bacteria and archaea. |
| >PLN02617 imidazole glycerol phosphate synthase hisHF | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.7e-20 Score=197.76 Aligned_cols=181 Identities=24% Similarity=0.265 Sum_probs=133.0
Q ss_pred ccEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCC-C---chhHHHHH
Q 046651 4 FVRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACP-E---DIGICLRV 79 (392)
Q Consensus 4 ~~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~-~---d~gi~~~l 79 (392)
..+|+|||+...+..++.+.|.+ .|+++++++. .+++ ..+|+||| ||+|++... . +.++ .+.
T Consensus 6 ~~~i~iiDyG~GN~~sl~~al~~-~G~~v~~v~~----~~~l-------~~~D~lIl-pG~gs~~~~m~~L~~~gl-~~~ 71 (538)
T PLN02617 6 DSEVTLLDYGAGNVRSVRNAIRH-LGFTIKDVQT----PEDI-------LNADRLIF-PGVGAFGSAMDVLNNRGM-AEA 71 (538)
T ss_pred CCeEEEEECCCCCHHHHHHHHHH-CCCeEEEECC----hhhh-------ccCCEEEE-CCCCCHHHHHHHHHHcCH-HHH
Confidence 36899999999999999999998 7999988753 2344 45999999 888886431 1 1121 222
Q ss_pred HHH--cCCCCEEEEcHHHHHHHHHh---------C---Ceeeec------CCCceeceeEEEecCCcccccCCCCCCcce
Q 046651 80 LLE--CWDVPILGVCLGHQALGFVH---------G---ADIVHA------PEPVHGRLSEIVHNGDRLFHDIPSGQNSGF 139 (392)
Q Consensus 80 l~~--~~~iPILGVCLGhQ~La~a~---------G---g~V~~a------pep~hG~~s~i~h~g~~LF~~ips~~~s~f 139 (392)
|++ ..++|+||||+|||+|+... | ++|.+. +-|++|+.......+++||.+++. +
T Consensus 72 i~~~i~~g~PvLGIC~G~QlLa~~~~E~g~~~glg~l~G~v~~~~~~~~~~vp~iGw~~V~~~~~spL~~~l~~-----~ 146 (538)
T PLN02617 72 LREYIQNDRPFLGICLGLQLLFESSEENGPVEGLGVIPGVVGRFDSSNGLRVPHIGWNALQITKDSELLDGVGG-----R 146 (538)
T ss_pred HHHHHHcCCCEEEECHHHHHHhhhhhhcCCccCcccccceEEECCccCCCCCCeecceEEEecCCChhHhcCCC-----c
Confidence 322 24899999999999999873 2 666654 235788876655678899999853 6
Q ss_pred EEEeeecceeecCCCCCCc-EEEEEecCCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCcccccccccCCc
Q 046651 140 KVVRYHSLIIDADSLPKEL-IPIAWSNSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRR 218 (392)
Q Consensus 140 ~VvryHSl~V~~~sLP~~l-~~iAwt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 218 (392)
.++++||+.+.. +|... ..++++.. + .
T Consensus 147 ~vy~vHSy~v~~--~p~~~~~v~a~~~~--------------g------------------------------------~ 174 (538)
T PLN02617 147 HVYFVHSYRATP--SDENKDWVLATCNY--------------G------------------------------------G 174 (538)
T ss_pred EEEEEeEEEEEe--cCCCCcEEEEEEcc--------------C------------------------------------C
Confidence 789999999866 55443 34555554 2 1
Q ss_pred ceEEEEEecCCCEEEEeccCCCCCCchhHHHHHHHHHHHH
Q 046651 219 EVLMGIMHSTRPHYGVQFHPESIATCYGSKILRNFREITE 258 (392)
Q Consensus 219 ~~vmgi~h~~~P~~GVQFHPEsiat~~G~~I~~NF~~l~~ 258 (392)
..++|+++ .++||+|||||... ..|.+||+||++...
T Consensus 175 ~~IaAI~~--gnI~GVQFHPE~s~-~~G~~L~~nFl~~~~ 211 (538)
T PLN02617 175 EFIASVRK--GNVHAVQFHPEKSG-ATGLSILRRFLEPKS 211 (538)
T ss_pred CcEEEEEe--CCEEEEEcCCccCc-hhHHHHHHHHHHhhh
Confidence 17899986 48999999999954 789999999997765
|
|
| >PF07722 Peptidase_C26: Peptidase C26; InterPro: IPR011697 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.3e-20 Score=174.89 Aligned_cols=159 Identities=22% Similarity=0.294 Sum_probs=105.8
Q ss_pred HHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCC---------CCCC------chhHHHHHHHH-
Q 046651 19 NIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSP---------ACPE------DIGICLRVLLE- 82 (392)
Q Consensus 19 nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp---------~~~~------d~gi~~~ll~~- 82 (392)
+.++.+.. +|..|++++.+. +.+++..+| ..+|||||+||.-+. .... .......+++.
T Consensus 28 ~Yv~~i~~-aG~~pv~ip~~~-~~~~~~~~l---~~idGlll~GG~~Di~P~~y~~~~~~~~~~~~~~rd~~e~~l~~~a 102 (217)
T PF07722_consen 28 SYVKAIEA-AGGRPVPIPYDA-DDEELDELL---DRIDGLLLPGGGSDIDPALYGEEPSPESGYIDPERDIFELALIRNA 102 (217)
T ss_dssp HHHHHHHH-TT-EEEEE-SS---HHHHHHHH---HCSSEEEE---SS-T-GGGGT---BTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-cCCEEEEEccCC-CHHHHHHHH---hhcCEEEEcCCccchhHhhcCCcccccCCCcCHHHHHHHHHHHHHH
Confidence 45677777 799999999986 367777777 789999998887322 1100 01123344444
Q ss_pred -cCCCCEEEEcHHHHHHHHHhCCeeeecCCCc-----e------eceeEEEecCCcccccCCC-CCCcceEEEeeeccee
Q 046651 83 -CWDVPILGVCLGHQALGFVHGADIVHAPEPV-----H------GRLSEIVHNGDRLFHDIPS-GQNSGFKVVRYHSLII 149 (392)
Q Consensus 83 -~~~iPILGVCLGhQ~La~a~Gg~V~~apep~-----h------G~~s~i~h~g~~LF~~ips-~~~s~f~VvryHSl~V 149 (392)
..++||||||+|||+|+.++||++...-... | .....|......+++.+.. . .+.|..+|.+.|
T Consensus 103 ~~~~~PilGICrG~Q~lnv~~GGtl~q~~~~~~~~~~~~~~~~~~~~h~v~i~~~s~l~~~~~~~---~~~vns~Hhq~v 179 (217)
T PF07722_consen 103 LGRGKPILGICRGMQLLNVAFGGTLYQDIPDQPGFPDHRQHPQDFPSHPVRIVPGSLLAKILGSE---EIEVNSFHHQAV 179 (217)
T ss_dssp CCTT--EEEETHHHHHHHHHCCSSEESCCCCSS-EEECEE-S-TS--EEEEEETTSTCCCTSHHC---TEEEEEEECEEE
T ss_pred HhcCCCEEEEcHHHHHHHHHhCCCceeecccCcCcccccccccccccccceeccCchHHHHhCcC---cceeecchhhhh
Confidence 3599999999999999999999987643321 1 1122333334444555554 2 289999999999
Q ss_pred ecCCCCCCcEEEEEecCCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCcccccccccCCcceEEEEEecCC
Q 046651 150 DADSLPKELIPIAWSNSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGIMHSTR 229 (392)
Q Consensus 150 ~~~sLP~~l~~iAwt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vmgi~h~~~ 229 (392)
+. |.+++.++|++.+ + +++||++...
T Consensus 180 ~~--l~~~l~v~A~s~D--------------g--------------------------------------~iEaie~~~~ 205 (217)
T PF07722_consen 180 KP--LGEGLRVTARSPD--------------G--------------------------------------VIEAIESPEH 205 (217)
T ss_dssp CC--HHCCEEEEEEECT--------------S--------------------------------------SEEEEEECCE
T ss_pred hc--cCCCceEEEEecC--------------C--------------------------------------cEEEEEEcCC
Confidence 98 9999999999998 7 8999998884
Q ss_pred --CEEEEeccCC
Q 046651 230 --PHYGVQFHPE 239 (392)
Q Consensus 230 --P~~GVQFHPE 239 (392)
|++|||||||
T Consensus 206 ~~~~~GvQwHPE 217 (217)
T PF07722_consen 206 KYPILGVQWHPE 217 (217)
T ss_dssp SS-EEEESS-CC
T ss_pred CCCEEEEEeCCC
Confidence 6999999999
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. These peptidases have gamma-glutamyl hydrolase activity; that is they catalyse the cleavage of the gamma-glutamyl bond in poly-gamma-glutamyl substrates. They are structurally related to IPR000991 from INTERPRO, but contain extensions in four loops and at the C terminus []. They belong to MEROPS peptidase family C26 (gamma-glutamyl hydrolase family), clan PC. The majority of the sequences are classified as unassigned peptidases. ; GO: 0016787 hydrolase activity, 0006541 glutamine metabolic process; PDB: 1L9X_A 3FIJ_D. |
| >COG2071 Predicted glutamine amidotransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=6.5e-20 Score=174.36 Aligned_cols=180 Identities=23% Similarity=0.359 Sum_probs=129.2
Q ss_pred HHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCC---------------CCCCchhHHHHHHHH
Q 046651 18 YNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSP---------------ACPEDIGICLRVLLE 82 (392)
Q Consensus 18 ~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp---------------~~~~d~gi~~~ll~~ 82 (392)
++.++.+.. +|.-|..++.-. .-+++..++ ...|+|||||| .+. ..++.-...+.+|++
T Consensus 29 ~~yv~ai~~-aGg~pillP~~~-d~~~~~~~l---~~iDgliltGg-~nV~P~~YGee~~~~~~~~~p~RD~~E~aLi~~ 102 (243)
T COG2071 29 YDYVDAIIK-AGGIPILLPALE-DPEDARQYL---DLIDGLILTGG-SNVDPSLYGEEPSEKDGPYDPERDAFELALIRA 102 (243)
T ss_pred HHHHHHHHH-cCCceEEecCCC-CHHHHHHHH---hhccEEEecCC-CcCCHHHcCCCCCcccCCCCccccHHHHHHHHH
Confidence 456677766 788888888322 245666666 77999999999 321 112222345566665
Q ss_pred --cCCCCEEEEcHHHHHHHHHhCCeeeecC------------CCceeceeEEE-ecCCcccccCCCCCCcceEEEeeecc
Q 046651 83 --CWDVPILGVCLGHQALGFVHGADIVHAP------------EPVHGRLSEIV-HNGDRLFHDIPSGQNSGFKVVRYHSL 147 (392)
Q Consensus 83 --~~~iPILGVCLGhQ~La~a~Gg~V~~ap------------ep~hG~~s~i~-h~g~~LF~~ips~~~s~f~VvryHSl 147 (392)
.+++||||||.|+|+|+.++||.+..-- .+.+=....|. ..++.|++-+... + +.|..+|.+
T Consensus 103 ALe~~iPILgICRG~QllNVa~GGtL~q~i~~~~~~~~H~~~~~~~~~~H~V~i~~~s~La~i~g~~--~-~~VNS~HhQ 179 (243)
T COG2071 103 ALERGIPILGICRGLQLLNVALGGTLYQDISEQPGHIDHRQPNPVHIESHEVHIEPGSKLAKILGES--E-FMVNSFHHQ 179 (243)
T ss_pred HHHcCCCEEEEccchHHHHHHhcCeeehhhhcccccccccCCCCcccceeEEEecCCccHHHhcCcc--c-eeecchHHH
Confidence 3699999999999999999999886421 11111122233 3466666655422 1 789999999
Q ss_pred eeecCCCCCCcEEEEEecCCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCcccccccccCCcceEEEEEec
Q 046651 148 IIDADSLPKELIPIAWSNSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGIMHS 227 (392)
Q Consensus 148 ~V~~~sLP~~l~~iAwt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vmgi~h~ 227 (392)
.|+. |.++|+++|+++| | +|+||++.
T Consensus 180 aIk~--La~~L~V~A~a~D--------------G--------------------------------------~VEAie~~ 205 (243)
T COG2071 180 AIKK--LAPGLVVEARAPD--------------G--------------------------------------TVEAVEVK 205 (243)
T ss_pred HHHH--hCCCcEEEEECCC--------------C--------------------------------------cEEEEEec
Confidence 9999 9999999999998 7 99999999
Q ss_pred C-CCEEEEeccCCCCCCc--hhHHHHHHHHHHHHHh
Q 046651 228 T-RPHYGVQFHPESIATC--YGSKILRNFREITEDY 260 (392)
Q Consensus 228 ~-~P~~GVQFHPEsiat~--~G~~I~~NF~~l~~~~ 260 (392)
+ ..+.|||||||..... .-++||+.|.+.+..+
T Consensus 206 ~~~fvlGVQWHPE~~~~~~~~~~~LFe~F~~~~~~~ 241 (243)
T COG2071 206 NDAFVLGVQWHPEYLVDTNPLSLALFEAFVNACKKH 241 (243)
T ss_pred CCceEEEEecChhhhccCChHHHHHHHHHHHHHHhh
Confidence 6 4567999999986543 3699999999988765
|
|
| >KOG0370 consensus Multifunctional pyrimidine synthesis protein CAD (includes carbamoyl-phophate synthetase, aspartate transcarbamylase, and glutamine amidotransferase) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.5e-20 Score=199.15 Aligned_cols=187 Identities=27% Similarity=0.408 Sum_probs=147.1
Q ss_pred CCccEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCc-hhHHHHHH
Q 046651 2 LEFVRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPED-IGICLRVL 80 (392)
Q Consensus 2 ~~~~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d-~gi~~~ll 80 (392)
+...|++.||+ ...+|+.+.|.. -|+++.||+++.+ ..+ .+||||+||.|||+|..... +.-..++|
T Consensus 170 Gk~~~I~aiDc--G~K~N~IRcL~~-RGa~vtVvPw~~~-i~~--------~~yDGlflSNGPGdPe~~~~~v~~vr~lL 237 (1435)
T KOG0370|consen 170 GKSLRILAIDC--GLKYNQIRCLVK-RGAEVTVVPWDYP-IAK--------EEYDGLFLSNGPGDPELCPLLVQNVRELL 237 (1435)
T ss_pred CcccEEEEccc--CchHHHHHHHHH-hCceEEEecCCcc-ccc--------cccceEEEeCCCCCchhhHHHHHHHHHHH
Confidence 34579999997 689999999988 5999999998876 333 46999999999999975332 33344555
Q ss_pred HHcCCCCEEEEcHHHHHHHHHhCCeeeecCCCceeceeEEEecCCcccccCCCCCCcceEEEeeecceeecCCCCCCcEE
Q 046651 81 LECWDVPILGVCLGHQALGFVHGADIVHAPEPVHGRLSEIVHNGDRLFHDIPSGQNSGFKVVRYHSLIIDADSLPKELIP 160 (392)
Q Consensus 81 ~~~~~iPILGVCLGhQ~La~a~Gg~V~~apep~hG~~s~i~h~g~~LF~~ips~~~s~f~VvryHSl~V~~~sLP~~l~~ 160 (392)
.. ++||+|||+|||+|+.+.||+..++..+.+|.+.+..+.. +++ -|-..+.|.|.|+.++||.+..+
T Consensus 238 ~~--~~PvfGIClGHQllA~AaGakT~KmKyGNRGhNiP~~~~~--------tGr--c~ITSQNHGYAVD~~tLp~gWk~ 305 (1435)
T KOG0370|consen 238 ES--NVPVFGICLGHQLLALAAGAKTYKMKYGNRGHNIPCTCRA--------TGR--CFITSQNHGYAVDPATLPAGWKP 305 (1435)
T ss_pred hC--CCCeEEEehhhHHHHHhhCCceEEeeccccCCCccceecc--------Cce--EEEEecCCceeeccccccCCCch
Confidence 44 5999999999999999999999999999999876654432 221 14445789999999999988776
Q ss_pred EEEecCCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCcccccccccCCcceEEEEEecCCCEEEEeccCCC
Q 046651 161 IAWSNSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGIMHSTRPHYGVQFHPES 240 (392)
Q Consensus 161 iAwt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vmgi~h~~~P~~GVQFHPEs 240 (392)
+-.+... + .-+||+|..+|++.+|||||.
T Consensus 306 lFvN~ND-------------g--------------------------------------SNEGI~Hss~P~fSvQFHPEa 334 (1435)
T KOG0370|consen 306 LFVNAND-------------G--------------------------------------SNEGIMHSSKPFFSVQFHPEA 334 (1435)
T ss_pred heeeccc-------------C--------------------------------------CCceEecCCCCceeeecCCcC
Confidence 6444320 2 567899999999999999999
Q ss_pred CCCch-hHHHHHHHHHHHHHhhhh
Q 046651 241 IATCY-GSKILRNFREITEDYWKR 263 (392)
Q Consensus 241 iat~~-G~~I~~NF~~l~~~~~~~ 263 (392)
..++. -..+|+.|.++.......
T Consensus 335 t~GP~DTeyLFDiFi~lvkk~kst 358 (1435)
T KOG0370|consen 335 TPGPHDTEYLFDVFIELVKKSKST 358 (1435)
T ss_pred CCCCcchHHHHHHHHHHHHHHhcC
Confidence 77665 478999999999877544
|
|
| >PRK05380 pyrG CTP synthetase; Validated | Back alignment and domain information |
|---|
Probab=99.83 E-value=6.9e-20 Score=191.53 Aligned_cols=197 Identities=20% Similarity=0.254 Sum_probs=122.0
Q ss_pred ccEEEEEECC----CCchHHHHHHHHH---hCCCCeEEEeCCCCCHHH--HHhhhcccCCcCEEEECCCCCCCCCCCchh
Q 046651 4 FVRTLLIDNY----DSYTYNIYQELST---INGVPPVVVRNDEWTWRD--ICRYLYEENAFDNIVISPGPGSPACPEDIG 74 (392)
Q Consensus 4 ~~r~LlIDny----DSyT~nl~q~L~~---v~G~~pvVV~nd~~~~ee--l~~~l~e~~~fDgIVISpGPGsp~~~~d~g 74 (392)
.++|.||--| |+|. ++..+|.. .++..+.+.+.|....++ ....| ..+|+|||+||+|.+.....+.
T Consensus 288 ~v~IalVGKY~~l~DaY~-Sv~eAL~hag~~~~~~v~i~wIdse~l~~~~~~~~L---~~~DGIIlpGGfG~~~~~g~i~ 363 (533)
T PRK05380 288 EVTIALVGKYVELPDAYK-SVIEALKHAGIANDVKVNIKWIDSEDLEEENVAELL---KGVDGILVPGGFGERGIEGKIL 363 (533)
T ss_pred ceEEEEEeCccCCcHHHH-HHHHHHHHHHHHcCCeeEEEEEChhhccCcchhhHh---hcCCEEEecCCCCccccccHHH
Confidence 4789998666 4443 34444433 267777777666554332 23333 6799999999999876554443
Q ss_pred HHHHHHHHcCCCCEEEEcHHHHHHHHHhCCeee---ecCCCcee------c--------------------eeEEE-ecC
Q 046651 75 ICLRVLLECWDVPILGVCLGHQALGFVHGADIV---HAPEPVHG------R--------------------LSEIV-HNG 124 (392)
Q Consensus 75 i~~~ll~~~~~iPILGVCLGhQ~La~a~Gg~V~---~apep~hG------~--------------------~s~i~-h~g 124 (392)
.. +..++ .++|+||||+|||+|+.++|+.+. .+...+.+ . ...+. ..+
T Consensus 364 ~i-~~a~e-~~iPiLGIClGmQll~va~Ggnv~g~qda~s~E~~~~t~~pvI~~~~~q~~~~~~ggtmrlg~h~v~i~~g 441 (533)
T PRK05380 364 AI-RYARE-NNIPFLGICLGMQLAVIEFARNVLGLEDANSTEFDPDTPHPVIDLMPEQKDVSDLGGTMRLGAYPCKLKPG 441 (533)
T ss_pred HH-HHHHH-CCCcEEEEchHHHHHHHHhcccccCcccCcccccCCCCCCCeEeeccccccccccCCcccccceeEEECCC
Confidence 32 22233 499999999999999999999984 22100100 0 01111 123
Q ss_pred CcccccCCCCCCcceEEEeeecceeecCC---C-CCCcEEEEEecCCCCccccccCCCCCCCcccccchhhhhhcccccc
Q 046651 125 DRLFHDIPSGQNSGFKVVRYHSLIIDADS---L-PKELIPIAWSNSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDIST 200 (392)
Q Consensus 125 ~~LF~~ips~~~s~f~VvryHSl~V~~~s---L-P~~l~~iAwt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (392)
+.|.+-+.... ..--.-|.+.|++.. + ..+|.+.||+.+. +
T Consensus 442 S~l~~iyg~~~---i~ErhrHryeVNs~h~qal~~~GL~vsa~s~Dg-------------g------------------- 486 (533)
T PRK05380 442 TLAAEIYGKEE---IYERHRHRYEVNNKYREQLEKAGLVFSGTSPDG-------------R------------------- 486 (533)
T ss_pred ChHHHHhCCCc---eeeecccceecCHHHHHHHhhcCeEEEEEcCCC-------------C-------------------
Confidence 33333222210 111123444444321 1 1379999998651 3
Q ss_pred cccCCCcccccccccCCcceEEEEEecCCCEE-EEeccCCCCCCc-hhHHHHHHHHHHHHHh
Q 046651 201 QIKNGSYRHSIYSNRMRREVLMGIMHSTRPHY-GVQFHPESIATC-YGSKILRNFREITEDY 260 (392)
Q Consensus 201 ~~~~g~~~~~~~~~~~~~~~vmgi~h~~~P~~-GVQFHPEsiat~-~G~~I~~NF~~l~~~~ 260 (392)
.++||++.++|+| |||||||..+.+ ..+.||++|.+.|..+
T Consensus 487 -------------------lVEaIEl~~hpfflGVQwHPE~~s~p~~~~pLF~~FV~Aa~~~ 529 (533)
T PRK05380 487 -------------------LVEIVELPDHPWFVGVQFHPEFKSRPRRPHPLFAGFVKAALEN 529 (533)
T ss_pred -------------------cEEEEEeCCCCEEEEEeCCCCCCCCCCchHHHHHHHHHHHHHH
Confidence 8999999999976 999999987654 4789999999999765
|
|
| >TIGR00337 PyrG CTP synthase | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.5e-19 Score=185.29 Aligned_cols=191 Identities=19% Similarity=0.272 Sum_probs=122.8
Q ss_pred ccEEEEEECC----CCchHHHHHHHHHhCCC----CeEEEeCCCCCHHHH-HhhhcccCCcCEEEECCCCCCCCCCCchh
Q 046651 4 FVRTLLIDNY----DSYTYNIYQELSTINGV----PPVVVRNDEWTWRDI-CRYLYEENAFDNIVISPGPGSPACPEDIG 74 (392)
Q Consensus 4 ~~r~LlIDny----DSyT~nl~q~L~~v~G~----~pvVV~nd~~~~eel-~~~l~e~~~fDgIVISpGPGsp~~~~d~g 74 (392)
.++|.|+-.| |+| -++.++|.. .|. .+++..-+....++. ...| ..+|+|||+||||++.....+.
T Consensus 289 ~v~IalVGKY~~~~daY-~SI~eAL~~-ag~~~~~~V~~~~i~se~i~~~~~~~L---~~~dGIiLpGG~G~~~~~g~i~ 363 (525)
T TIGR00337 289 EVTIGIVGKYVELKDSY-LSVIEALKH-AGAKLDTKVNIKWIDSEDLEEEGAEFL---KGVDGILVPGGFGERGVEGKIL 363 (525)
T ss_pred CcEEEEEeCCcCCHHHH-HHHHHHHHh-CccccCCEEEEEEecHHHhhhhhhhhh---cCCCEEEeCCCCCChhhcChHH
Confidence 4899999887 566 378888876 454 343333332211111 1123 5699999999999986433333
Q ss_pred HHHHHHHHcCCCCEEEEcHHHHHHHHHhCCeeeecCCCceec-----eeE------------------------EE-ecC
Q 046651 75 ICLRVLLECWDVPILGVCLGHQALGFVHGADIVHAPEPVHGR-----LSE------------------------IV-HNG 124 (392)
Q Consensus 75 i~~~ll~~~~~iPILGVCLGhQ~La~a~Gg~V~~apep~hG~-----~s~------------------------i~-h~g 124 (392)
..+..++. ++|+||||+|||+|+.++|+.|...+...+.. ... +. ..+
T Consensus 364 -ai~~a~e~-~iP~LGIClG~Qll~i~~grnv~gl~~A~s~Ef~~~~~~pVi~l~~~~~~~~~~GGTmRLG~h~v~i~~g 441 (525)
T TIGR00337 364 -AIKYAREN-NIPFLGICLGMQLAVIEFARNVLGLKGANSTEFDPETKYPVVDLLPEQKDISDLGGTMRLGLYPCILKPG 441 (525)
T ss_pred -HHHHHHHc-CCCEEEEcHHHHHHHHHHHHHhcCCCCCCccccCCCCCCCeeeccCcccccccCCceeeccceEEEECCC
Confidence 23334444 99999999999999999999887765443311 111 11 122
Q ss_pred CcccccCCCCCCcceEEEeeecceeecCCC----CCCcEEEEEecCCCCccccccCCCCCCCcccccchhhhhhcccccc
Q 046651 125 DRLFHDIPSGQNSGFKVVRYHSLIIDADSL----PKELIPIAWSNSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDIST 200 (392)
Q Consensus 125 ~~LF~~ips~~~s~f~VvryHSl~V~~~sL----P~~l~~iAwt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (392)
+.|.+-+.... ...-+.|++.|++... .++|+++||+.+. +
T Consensus 442 S~L~~iyG~~~---i~erhrHry~VNs~h~q~l~~~GL~vsa~s~Dg-------------g------------------- 486 (525)
T TIGR00337 442 TLAFKLYGKEE---VYERHRHRYEVNNEYREQLENKGLIVSGTSPDG-------------R------------------- 486 (525)
T ss_pred ChHHHHhCCCc---eeecccceEEECHHHHHhhhhCCeEEEEEECCC-------------C-------------------
Confidence 33332222210 2223457777776332 2689999998761 3
Q ss_pred cccCCCcccccccccCCcceEEEEEecCCCEE-EEeccCCCCCCch-hHHHHHHHHH
Q 046651 201 QIKNGSYRHSIYSNRMRREVLMGIMHSTRPHY-GVQFHPESIATCY-GSKILRNFRE 255 (392)
Q Consensus 201 ~~~~g~~~~~~~~~~~~~~~vmgi~h~~~P~~-GVQFHPEsiat~~-G~~I~~NF~~ 255 (392)
+++||++.++|+| |||||||..+.+. .+.||+.|.+
T Consensus 487 -------------------~VEaIE~~~hpfflGVQwHPE~~s~p~~~~~LF~~FV~ 524 (525)
T TIGR00337 487 -------------------LVEIIELPDHPFFVACQFHPEFTSRPNRPHPLFLGFVK 524 (525)
T ss_pred -------------------EEEEEEECCCCeEEEEecCCCCCCCCCchhHHHHHHHh
Confidence 8999999999977 9999999876543 5799999985
|
CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. The enzyme catalyzes the reaction L-glutamine + H2O + UTP + ATP = CTP + phosphate + ADP + L-glutamate. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found circa 500 bp 5' upstream of enolase in both beta (Nitrosomonas europaea) and gamma (E.coli) subdivisions of proteobacterium (FEMS Microbiol Lett 1998 Aug 1;165(1):153-7). |
| >PRK06186 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=99.78 E-value=2e-18 Score=164.40 Aligned_cols=192 Identities=18% Similarity=0.219 Sum_probs=113.8
Q ss_pred cEEEEEECC----CCchHHHHHHHHHh---CCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHH
Q 046651 5 VRTLLIDNY----DSYTYNIYQELSTI---NGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICL 77 (392)
Q Consensus 5 ~r~LlIDny----DSyT~nl~q~L~~v---~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~ 77 (392)
++|.||--| |+|. ++.+.|.-. ++.++.+..-|..+.++- ..| ..+|||+|.||.|.......+.. .
T Consensus 2 v~IalVGKY~~~~daY~-Sv~eal~ha~~~~~~~~~i~wi~s~~l~~~-~~l---~~~dgilvpgGfg~rg~~Gki~a-i 75 (229)
T PRK06186 2 LRIALVGDYNPDVTAHQ-AIPLALDLAAAVLGLPVDYEWLPTPEITDP-EDL---AGFDGIWCVPGSPYRNDDGALTA-I 75 (229)
T ss_pred cEEEEEECCcCCcHHHH-HHHHHHHHHHHhcCCeeEEEEEchhhcCCh-hhH---hhCCeeEeCCCCCcccHhHHHHH-H
Confidence 688888776 6665 455555432 676666554444333321 123 57999999999886543333322 2
Q ss_pred HHHHHcCCCCEEEEcHHHHHHHHHhCCeeeecCC------------Cce--------eceeEEEe-cCCcccccCCCCCC
Q 046651 78 RVLLECWDVPILGVCLGHQALGFVHGADIVHAPE------------PVH--------GRLSEIVH-NGDRLFHDIPSGQN 136 (392)
Q Consensus 78 ~ll~~~~~iPILGVCLGhQ~La~a~Gg~V~~ape------------p~h--------G~~s~i~h-~g~~LF~~ips~~~ 136 (392)
+..++ .++|+||||+|||++...+...+...+. |+. .....+.. .++.|.+-+....
T Consensus 76 ~~Are-~~iP~LGIClGmQ~avIe~arnv~g~~dA~s~E~~~~~~~pvi~~~~~~~~~~~h~v~l~~~S~l~~iyg~~~- 153 (229)
T PRK06186 76 RFARE-NGIPFLGTCGGFQHALLEYARNVLGWADAAHAETDPEGDRPVIAPLSCSLVEKTGDIRLRPGSLIARAYGTLE- 153 (229)
T ss_pred HHHHH-cCCCeEeechhhHHHHHHHHhhhcCCcCCCcCCCCCCCCCCEEEECccccccCceEEEECCCCHHHHHhCCCe-
Confidence 33333 3999999999999755544333322111 100 00122322 3444443332220
Q ss_pred cceEEEeeecceeecCC----CCCCcEEEEEecCCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCcccccc
Q 046651 137 SGFKVVRYHSLIIDADS----LPKELIPIAWSNSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIY 212 (392)
Q Consensus 137 s~f~VvryHSl~V~~~s----LP~~l~~iAwt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 212 (392)
+..-.-|.+.|++.- ..++|.++||+.+ +
T Consensus 154 --i~erhrHryeVNs~h~q~i~~~GL~vsa~s~D--------------G------------------------------- 186 (229)
T PRK06186 154 --IEEGYHCRYGVNPEFVAALESGDLRVTGWDED--------------G------------------------------- 186 (229)
T ss_pred --eeeeccccEEECHHHHHHHhcCCeEEEEEcCC--------------C-------------------------------
Confidence 211123455555310 2568999999988 6
Q ss_pred cccCCcceEEEEEecCCCE-EEEeccCCCCCCc-hhHHHHHHHHHHHH
Q 046651 213 SNRMRREVLMGIMHSTRPH-YGVQFHPESIATC-YGSKILRNFREITE 258 (392)
Q Consensus 213 ~~~~~~~~vmgi~h~~~P~-~GVQFHPEsiat~-~G~~I~~NF~~l~~ 258 (392)
++++|+..+.|+ +|||||||..+.+ .-+.||+.|.+.+.
T Consensus 187 -------~iEaiE~~~hpf~lGVQwHPE~~s~~~~~~~LF~~Fv~aa~ 227 (229)
T PRK06186 187 -------DVRAVELPGHPFFVATLFQPERAALAGRPPPLVRAFLRAAR 227 (229)
T ss_pred -------CEEEEEeCCCCcEEEEeCCCCccCCCCCCCHHHHHHHHHHh
Confidence 899999988885 5999999986543 24689999998774
|
|
| >TIGR03800 PLP_synth_Pdx2 pyridoxal 5'-phosphate synthase, glutaminase subunit Pdx2 | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.7e-17 Score=152.94 Aligned_cols=169 Identities=15% Similarity=0.202 Sum_probs=106.0
Q ss_pred EEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCC--CCchhHHHHHHHH-
Q 046651 6 RTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPAC--PEDIGICLRVLLE- 82 (392)
Q Consensus 6 r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~--~~d~gi~~~ll~~- 82 (392)
|+.|+.-+..|.. ....|++ .|+++++++.. +++ ..+|+|||+||+++... ..+.++ .+.|++
T Consensus 1 ~igvl~~qg~~~e-~~~~l~~-~g~~~~~v~~~----~~l-------~~~d~liipGG~~~~~~~l~~~~~l-~~~i~~~ 66 (184)
T TIGR03800 1 KIGVLALQGAVRE-HARALEA-LGVEGVEVKRP----EQL-------DEIDGLIIPGGESTTLSRLLDKYGM-FEPLRNF 66 (184)
T ss_pred CEEEEEccCCHHH-HHHHHHH-CCCEEEEECCh----HHh-------ccCCEEEECCCCHHHHHHHHHhccH-HHHHHHH
Confidence 3555555556654 5577887 79999888652 343 45999999887765421 112222 233333
Q ss_pred -cCCCCEEEEcHHHHHHHHHhC-----------CeeeecCCCceeceeEEEecCCcccccCCCCCCcceEEEeeecceee
Q 046651 83 -CWDVPILGVCLGHQALGFVHG-----------ADIVHAPEPVHGRLSEIVHNGDRLFHDIPSGQNSGFKVVRYHSLIID 150 (392)
Q Consensus 83 -~~~iPILGVCLGhQ~La~a~G-----------g~V~~apep~hG~~s~i~h~g~~LF~~ips~~~s~f~VvryHSl~V~ 150 (392)
..++||||||.|||+|+..+. +++.+.+. |+.....+. .-.++++-.+ .+..+..|...|.
T Consensus 67 ~~~g~pilGIC~G~qlL~~~~~~~~~~~lg~~~~~v~~~~~---g~~~~s~~~-~l~~~~~~~~---~~~~~~~h~~~v~ 139 (184)
T TIGR03800 67 ILSGLPVFGTCAGLIMLAKEIIGQKEGYLGLLDMTVERNAY---GRQVDSFEA-EVDIKGVGDD---PITGVFIRAPKIV 139 (184)
T ss_pred HHcCCcEEEECHHHHHHHhhhccCCCCccCcEEEEEEeecc---CCccccEEE-EeecccCCCC---cceEEEEcCCCcc
Confidence 348999999999999999973 33333321 111000000 0011122111 1667789999998
Q ss_pred cCCCCCCcEEEEEecCCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCcccccccccCCcceEEEEEecCCC
Q 046651 151 ADSLPKELIPIAWSNSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGIMHSTRP 230 (392)
Q Consensus 151 ~~sLP~~l~~iAwt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vmgi~h~~~P 230 (392)
. +|++++++||+++ + +.|++ .++
T Consensus 140 ~--lp~~~~vla~~~~--------------~---------------------------------------~~a~~--~~~ 162 (184)
T TIGR03800 140 S--VGNGVEILAKVGN--------------R---------------------------------------IVAVR--QGN 162 (184)
T ss_pred c--CCCCeEEEEEeCC--------------e---------------------------------------eEEEE--eCC
Confidence 8 9999999999866 3 44664 447
Q ss_pred EEEEeccCCCCCCchhHHHHHHHHH
Q 046651 231 HYGVQFHPESIATCYGSKILRNFRE 255 (392)
Q Consensus 231 ~~GVQFHPEsiat~~G~~I~~NF~~ 255 (392)
+||+|||||.. . .-++++.|++
T Consensus 163 ~~gvQfHPE~~-~--~~~~~~~f~~ 184 (184)
T TIGR03800 163 ILVSSFHPELT-D--DHRVHEYFLE 184 (184)
T ss_pred EEEEEeCCccC-C--CchHHHHhhC
Confidence 99999999983 2 2388998863
|
Pyridoxal 5'-phosphate (PLP) is synthesized by the PdxA/PdxJ pathway in some species (mostly within the gamma subdivision of the proteobacteria) and by the Pdx1/Pdx2 pathway in most other organisms. This family describes Pdx2, the glutaminase subunit of the PLP synthase. |
| >PLN02327 CTP synthase | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.9e-17 Score=173.74 Aligned_cols=196 Identities=19% Similarity=0.225 Sum_probs=122.7
Q ss_pred ccEEEEEECC----CCchHHHHHHHHH---hCCCCeEEEeCCCCCHHH------------HHhhhcccCCcCEEEECCCC
Q 046651 4 FVRTLLIDNY----DSYTYNIYQELST---INGVPPVVVRNDEWTWRD------------ICRYLYEENAFDNIVISPGP 64 (392)
Q Consensus 4 ~~r~LlIDny----DSyT~nl~q~L~~---v~G~~pvVV~nd~~~~ee------------l~~~l~e~~~fDgIVISpGP 64 (392)
.+||.||--| |+|. ++..+|.- .++..+.+..-+....++ +...| ..+|+||++||+
T Consensus 297 ~v~IalVGKY~~l~DAY~-Si~eAL~hA~~~~~~~v~i~wI~se~l~~~~~~~~~~~y~~~~~~L---~~~DGIvvpGGf 372 (557)
T PLN02327 297 PVRIAMVGKYTGLSDSYL-SVLKALLHASVACSRKLVIDWVAASDLEDETAKETPDAYAAAWKLL---KGADGILVPGGF 372 (557)
T ss_pred ceEEEEEecccCCcHhHH-HHHHHHHHHHHHcCCeeEEEEEchhhcCCcccccccchhhhhHHhh---ccCCEEEeCCCC
Confidence 4789999777 5554 44555532 267666555433322221 11223 679999999999
Q ss_pred CCCCCCCchhHHHHHHHHcCCCCEEEEcHHHHHHHHHhCCeeeecCCCceece------eEEE--------e--------
Q 046651 65 GSPACPEDIGICLRVLLECWDVPILGVCLGHQALGFVHGADIVHAPEPVHGRL------SEIV--------H-------- 122 (392)
Q Consensus 65 Gsp~~~~d~gi~~~ll~~~~~iPILGVCLGhQ~La~a~Gg~V~~apep~hG~~------s~i~--------h-------- 122 (392)
|++.....+. ..+..++ .++|+||||+|||+++..++..|...+...+... ..|. .
T Consensus 373 G~~~~~G~i~-ai~~are-~~iP~LGIClGmQl~viefaRnvlG~~dAnS~Efdp~t~~pvI~~m~e~~~~~~GGtMRLG 450 (557)
T PLN02327 373 GDRGVEGKIL-AAKYARE-NKVPYLGICLGMQIAVIEFARSVLGLKDANSTEFDPETPNPCVIFMPEGSKTHMGGTMRLG 450 (557)
T ss_pred CCcccccHHH-HHHHHHH-cCCCEEEEcHHHHHHHHHHHHhhcCCcCCCccccCCCCCCCEEEEehhcccccCCceEECC
Confidence 8875543322 2233333 4999999999999999999887766543211110 0010 0
Q ss_pred --------cCCcccccCCCCCCcceEEE--eeecceeecCCC----CCCcEEEEEecCCCCccccccCCCCCCCcccccc
Q 046651 123 --------NGDRLFHDIPSGQNSGFKVV--RYHSLIIDADSL----PKELIPIAWSNSADGFSYLGTLQSGEIPDAYQSQ 188 (392)
Q Consensus 123 --------~g~~LF~~ips~~~s~f~Vv--ryHSl~V~~~sL----P~~l~~iAwt~~~~~~~~~~~~~~~~~~~~~~~~ 188 (392)
.++.+.+-.... ..|. .-|.|.|++..+ .+++.++||+.+ +
T Consensus 451 ~~~~~~~~~~S~l~~iYg~~----~~VnerHrHRYeVN~q~v~~le~~gL~vsa~s~d--------------g------- 505 (557)
T PLN02327 451 SRRTYFQTPDCKSAKLYGNV----SFVDERHRHRYEVNPEMVPRLEKAGLSFVGKDET--------------G------- 505 (557)
T ss_pred CcccccCCCCCHHHHHhCCc----cceeeeeccccccCHHHHHHHhhcCcEEEEEcCC--------------C-------
Confidence 111111111111 1233 345788877543 368999999876 3
Q ss_pred hhhhhhcccccccccCCCcccccccccCCcceEEEEEecCCCEE-EEeccCCCCCCch-hHHHHHHHHHHHHHh
Q 046651 189 SRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGIMHSTRPHY-GVQFHPESIATCY-GSKILRNFREITEDY 260 (392)
Q Consensus 189 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vmgi~h~~~P~~-GVQFHPEsiat~~-G~~I~~NF~~l~~~~ 260 (392)
.+++++++.++|+| |||||||..+.+. .+.||..|++.+...
T Consensus 506 ------------------------------~~IEaiE~~~~pffvGVQfHPE~~s~p~~~~pLF~~Fv~Aa~~~ 549 (557)
T PLN02327 506 ------------------------------RRMEIVELPSHPFFVGVQFHPEFKSRPGKPSPLFLGLIAAASGQ 549 (557)
T ss_pred ------------------------------CEEEEEEeCCCCEEEEEEcCCCCCCCCCCchHHHHHHHHHHHHh
Confidence 17999999999988 9999999876543 589999999988754
|
|
| >PRK03619 phosphoribosylformylglycinamidine synthase I; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.9e-17 Score=154.33 Aligned_cols=193 Identities=16% Similarity=0.214 Sum_probs=126.0
Q ss_pred cEEEEEECCCCch-HHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCC-----CCchhHHHH
Q 046651 5 VRTLLIDNYDSYT-YNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPAC-----PEDIGICLR 78 (392)
Q Consensus 5 ~r~LlIDnyDSyT-~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~-----~~d~gi~~~ 78 (392)
|||+||.+..+++ +.++.++....|+++..|..++. ++ .+||+|||+||+..-.. ........+
T Consensus 1 ~~v~Vl~~~G~n~~~d~~~a~~~~~G~~~~~v~~~~~---~l-------~~~D~lvipGG~~~~d~l~~~~~~~~~~~~~ 70 (219)
T PRK03619 1 MKVAVIVFPGSNCDRDMARALRDLLGAEPEYVWHKET---DL-------DGVDAVVLPGGFSYGDYLRCGAIAAFSPIMK 70 (219)
T ss_pred CEEEEEecCCcChHHHHHHHHHhcCCCeEEEEecCcC---CC-------CCCCEEEECCCCchhhhhccchhhhchHHHH
Confidence 7999999999995 66899998337998888866543 22 56999999887643211 111122344
Q ss_pred HHHH--cCCCCEEEEcHHHHHHHHH--hCCeeeecCCCcee--ceeE-EEecCCcccccCCCCCCcceEEEee---ecce
Q 046651 79 VLLE--CWDVPILGVCLGHQALGFV--HGADIVHAPEPVHG--RLSE-IVHNGDRLFHDIPSGQNSGFKVVRY---HSLI 148 (392)
Q Consensus 79 ll~~--~~~iPILGVCLGhQ~La~a--~Gg~V~~apep~hG--~~s~-i~h~g~~LF~~ips~~~s~f~Vvry---HSl~ 148 (392)
+|++ ..++||+|||.|+|+|+.+ +++++.+.....+. +... |..+++.+++++..+. .+.+.-. |.+.
T Consensus 71 ~l~~~~~~g~~ilgIC~G~qlLa~~GLL~g~l~~n~~~~~~~~~v~v~i~~~~~~~~~~~~~g~--~~~~~~aH~~~r~~ 148 (219)
T PRK03619 71 AVKEFAEKGKPVLGICNGFQILTEAGLLPGALTRNASLKFICRDVHLRVENNDTPFTSGYEKGE--VIRIPIAHGEGNYY 148 (219)
T ss_pred HHHHHHHCCCEEEEECHHHHHHHHcCCCCCeEEEcCCCcEEEEEEEEEECCCCChhhcCCCCCC--EEEEEEEcCcccEE
Confidence 4444 3599999999999999997 88888877666653 2222 3334678888875442 1333212 3444
Q ss_pred eecCC---C-CCCcEEEEEecCCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCcccccccccCCcceEEEE
Q 046651 149 IDADS---L-PKELIPIAWSNSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGI 224 (392)
Q Consensus 149 V~~~s---L-P~~l~~iAwt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vmgi 224 (392)
++.+. | -++++++..+.. + |. .+...|.++
T Consensus 149 ~~~~~~~~l~~~~~~~~~~~~~--------------n---------------pn-----------------gs~~~ia~i 182 (219)
T PRK03619 149 ADEETLKRLEGNGQVVFRYCDE--------------N---------------PN-----------------GSVNDIAGI 182 (219)
T ss_pred ECHHHHHHHHhCCcEEEEEcCC--------------C---------------CC-----------------CCHHHhccc
Confidence 44321 2 234555544422 1 00 011268888
Q ss_pred EecCCCEEEEeccCCCCCC-----chhHHHHHHHHH
Q 046651 225 MHSTRPHYGVQFHPESIAT-----CYGSKILRNFRE 255 (392)
Q Consensus 225 ~h~~~P~~GVQFHPEsiat-----~~G~~I~~NF~~ 255 (392)
...++.++|+|||||+.+. ..|++||+||++
T Consensus 183 ~~~~~~~~g~~~HPE~~~~~~~~~~~g~~lf~~~v~ 218 (219)
T PRK03619 183 VNEKGNVLGMMPHPERAVEPLLGSTDGLKLFESLLK 218 (219)
T ss_pred CCCCCCEEEEeCCCCccccCccCCCcCHHHHHHHhh
Confidence 8667789999999999865 479999999975
|
|
| >KOG3179 consensus Predicted glutamine synthetase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.2e-17 Score=152.20 Aligned_cols=161 Identities=20% Similarity=0.278 Sum_probs=118.9
Q ss_pred CCCchHHHHHHHHHhCCCC---eEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhH-HHHHHHH--cCCC
Q 046651 13 YDSYTYNIYQELSTINGVP---PVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGI-CLRVLLE--CWDV 86 (392)
Q Consensus 13 yDSyT~nl~q~L~~v~G~~---pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi-~~~ll~~--~~~i 86 (392)
|..|-.-...+|.. -|+. ..|+.++-|..+|+.. |||+||||...+....+|+-. +..++.+ .-++
T Consensus 23 yGgy~nvfvsllg~-ege~wd~frV~~gefP~~~Dl~k-------y~gfvIsGS~~dAf~d~dWI~KLcs~~kkld~mkk 94 (245)
T KOG3179|consen 23 YGGYFNVFVSLLGD-EGEQWDLFRVIDGEFPQEEDLEK-------YDGFVISGSKHDAFSDADWIKKLCSFVKKLDFMKK 94 (245)
T ss_pred hcCHHHHHHHHhcc-cCceeEEEEEecCCCCChhhhhh-------hceEEEeCCcccccccchHHHHHHHHHHHHHhhcc
Confidence 44444344455544 4554 4678888887788754 999999987777665444311 1122222 2379
Q ss_pred CEEEEcHHHHHHHHHhCCeeeecCCC---ceeceeEEE--ecCCcccccCCCCCCcceEEEeeecceeecCCCCCCcEEE
Q 046651 87 PILGVCLGHQALGFVHGADIVHAPEP---VHGRLSEIV--HNGDRLFHDIPSGQNSGFKVVRYHSLIIDADSLPKELIPI 161 (392)
Q Consensus 87 PILGVCLGhQ~La~a~Gg~V~~apep---~hG~~s~i~--h~g~~LF~~ips~~~s~f~VvryHSl~V~~~sLP~~l~~i 161 (392)
||||||+|||+||.+.|++|.++|.+ ..|-...+. .++..+|..||.. ..+...|++.|-. +|++++.+
T Consensus 95 kvlGICFGHQiiara~Gg~Vgra~KG~~~~lg~itivk~~~~~~~yFG~~~~~----l~IikcHqDevle--~PE~a~ll 168 (245)
T KOG3179|consen 95 KVLGICFGHQIIARAKGGKVGRAPKGPDLGLGSITIVKDAEKPEKYFGEIPKS----LNIIKCHQDEVLE--LPEGAELL 168 (245)
T ss_pred ceEEEeccHHHHHHhhCCccccCCCCCcccccceEEEEecccchhhcccchhh----hhHHhhcccceec--CCchhhhh
Confidence 99999999999999999999999976 344333333 3577899999888 7788999999988 99999999
Q ss_pred EEecCCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCcccccccccCCcceEEEEEecCCCEEEEeccCCC
Q 046651 162 AWSNSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGIMHSTRPHYGVQFHPES 240 (392)
Q Consensus 162 Awt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vmgi~h~~~P~~GVQFHPEs 240 (392)
|.++. + .++++. ..+..+++|-|||.
T Consensus 169 asSe~--------------c--------------------------------------eve~fs-~~~~~l~fQGHPEy 194 (245)
T KOG3179|consen 169 ASSEK--------------C--------------------------------------EVEMFS-IEDHLLCFQGHPEY 194 (245)
T ss_pred ccccc--------------c--------------------------------------ceEEEE-ecceEEEecCCchh
Confidence 99988 7 677776 55678899999998
|
|
| >cd01749 GATase1_PB Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.8e-16 Score=145.46 Aligned_cols=133 Identities=19% Similarity=0.264 Sum_probs=86.9
Q ss_pred EEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCC--CCchhHHHHHHHH--
Q 046651 7 TLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPAC--PEDIGICLRVLLE-- 82 (392)
Q Consensus 7 ~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~--~~d~gi~~~ll~~-- 82 (392)
+|.+.+ .+...+ +.|++ .|+++++++.. +++ ..+|+|||+||+.+... ..+... .+.|++
T Consensus 3 vl~~qg--~~~e~~-~~l~~-~g~~v~~v~~~----~~l-------~~~dgiii~Gg~~~~~~~~~~~~~~-~~~i~~~~ 66 (183)
T cd01749 3 VLALQG--DFREHI-RALER-LGVEVIEVRTP----EDL-------EGIDGLIIPGGESTTIGKLLRRTGL-LDPLREFI 66 (183)
T ss_pred EEEecC--CcHHHH-HHHHH-CCCeEEEECCH----HHh-------ccCCEEEECCchHHHHHHHHHhCCH-HHHHHHHH
Confidence 455554 444445 77776 79999888663 233 56999999887754332 112222 333443
Q ss_pred cCCCCEEEEcHHHHHHHHHhCC------------eeeecCCC-ceeceeEEEecCCcccccCC-CCCCcceEEEeeecce
Q 046651 83 CWDVPILGVCLGHQALGFVHGA------------DIVHAPEP-VHGRLSEIVHNGDRLFHDIP-SGQNSGFKVVRYHSLI 148 (392)
Q Consensus 83 ~~~iPILGVCLGhQ~La~a~Gg------------~V~~apep-~hG~~s~i~h~g~~LF~~ip-s~~~s~f~VvryHSl~ 148 (392)
..++|+||||+|||+|+.++|+ +|.+.+.+ ..|+. .....+.+++ .. |.++..|...
T Consensus 67 ~~g~PvlGiC~G~qlL~~~~~~~~~~~glG~~~~~v~~~~~g~~~g~~-----~~~l~~~~~~~~~----~~~~~~h~~~ 137 (183)
T cd01749 67 RAGKPVFGTCAGLILLAKEVEDQGGQPLLGLLDITVRRNAFGRQVDSF-----EADLDIPGLGLGP----FPAVFIRAPV 137 (183)
T ss_pred HcCCeEEEECHHHHHHHHHhcccCCCCccCceeEEEEeeccccccceE-----EEcCCCCcCCCCc----cEEEEEECcE
Confidence 2489999999999999999998 45443321 12211 1112344553 44 8999999999
Q ss_pred eecCCCCCCcEEEEEecC
Q 046651 149 IDADSLPKELIPIAWSNS 166 (392)
Q Consensus 149 V~~~sLP~~l~~iAwt~~ 166 (392)
|.. +|++++++|.++.
T Consensus 138 v~~--~p~~~~~la~~~~ 153 (183)
T cd01749 138 IEE--VGPGVEVLAEYDG 153 (183)
T ss_pred EEE--cCCCcEEEEecCC
Confidence 988 9999999999865
|
Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis. Glutamine amidotransferase (GATase) activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. This group contains proteins like Bacillus subtilus YaaE and Plasmodium falciparum Pdx2 which are members of the triad glutamine aminotransferase family and function in a pathway for the biosynthesis of vitamin B6. |
| >PRK05368 homoserine O-succinyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.5e-15 Score=148.56 Aligned_cols=174 Identities=18% Similarity=0.159 Sum_probs=117.1
Q ss_pred ccEEEEEECCCC--ch-HHHHHHHHHhCC--CCeEEEeCCC---------------CCHHHHHhhhcccCCcCEEEECCC
Q 046651 4 FVRTLLIDNYDS--YT-YNIYQELSTING--VPPVVVRNDE---------------WTWRDICRYLYEENAFDNIVISPG 63 (392)
Q Consensus 4 ~~r~LlIDnyDS--yT-~nl~q~L~~v~G--~~pvVV~nd~---------------~~~eel~~~l~e~~~fDgIVISpG 63 (392)
.+||+|++.=.- -| .++.++|.. .. +++..++-.. .+++++.. ..|||+||+|.
T Consensus 35 pl~i~ilNlMp~k~~TE~q~~rll~~-~~~qv~v~~~~~~~h~~~~~~~~hl~~~y~~~~~i~~-----~~~DG~IITGA 108 (302)
T PRK05368 35 PLKILILNLMPKKIETETQFLRLLGN-TPLQVDIHLLRIDSHESKNTPAEHLENFYCTFEDIKD-----EKFDGLIITGA 108 (302)
T ss_pred CccEEEEeCCCCCchHHHHHHHHhcC-CCceEEEEEEecCCcCCCCCCHHHHHHhccCHHHhcc-----CCCCEEEEcCC
Confidence 478999987422 13 356666643 22 2233343333 13455544 78999999988
Q ss_pred CCC--CCCCCc-hhHHH---HHHHHcCCCCEEEEcHHHHHHHHHhCCeee-ecCCCceecee-EEEecCCcccccCCCCC
Q 046651 64 PGS--PACPED-IGICL---RVLLECWDVPILGVCLGHQALGFVHGADIV-HAPEPVHGRLS-EIVHNGDRLFHDIPSGQ 135 (392)
Q Consensus 64 PGs--p~~~~d-~gi~~---~ll~~~~~iPILGVCLGhQ~La~a~Gg~V~-~apep~hG~~s-~i~h~g~~LF~~ips~~ 135 (392)
|-. +....+ +.-+. +++++. .+|+||||+|||++++++||... ..++...|... .+....++|+.+++..
T Consensus 109 p~e~~~fedv~YW~El~~i~~w~~~~-~~s~LgICwGaQa~a~algGi~k~~~~~K~~Gv~~~~~~~~~~pL~~g~~d~- 186 (302)
T PRK05368 109 PVEQLPFEDVDYWDELKEILDWAKTH-VTSTLFICWAAQAALYHLYGIPKYTLPEKLSGVFEHRVLDPHHPLLRGFDDS- 186 (302)
T ss_pred CCCCccCCCCchHHHHHHHHHHHHHc-CCCEEEEcHHHHHHHHHcCCCccCCCCCceeEEEEEEEcCCCChhhcCCCCc-
Confidence 877 444433 22233 334434 89999999999999999999632 23334666433 2334467899999987
Q ss_pred CcceEEEeeecceeecC--CCCCCcEEEEEecCCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCccccccc
Q 046651 136 NSGFKVVRYHSLIIDAD--SLPKELIPIAWSNSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYS 213 (392)
Q Consensus 136 ~s~f~VvryHSl~V~~~--sLP~~l~~iAwt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 213 (392)
|.+-..|...|..+ .+|++++++|.++. +
T Consensus 187 ---F~~phSr~~~V~~~~i~~~~~l~vLA~S~~--------------~-------------------------------- 217 (302)
T PRK05368 187 ---FLVPHSRYTEVREEDIRAATGLEILAESEE--------------A-------------------------------- 217 (302)
T ss_pred ---cccceeehhhccHHHhccCCCCEEEecCCC--------------C--------------------------------
Confidence 88887877777432 26899999999977 4
Q ss_pred ccCCcceEEEEEecCCCEEEEeccCCC
Q 046651 214 NRMRREVLMGIMHSTRPHYGVQFHPES 240 (392)
Q Consensus 214 ~~~~~~~vmgi~h~~~P~~GVQFHPEs 240 (392)
-++++...+..+|++|+|||.
T Consensus 218 ------gv~~~~~~~~r~~~vQgHPEY 238 (302)
T PRK05368 218 ------GVYLFASKDKREVFVTGHPEY 238 (302)
T ss_pred ------CeEEEEeCCCCEEEEECCCCC
Confidence 466676567789999999998
|
|
| >COG0504 PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.59 E-value=6.3e-15 Score=151.65 Aligned_cols=198 Identities=20% Similarity=0.267 Sum_probs=119.0
Q ss_pred cEEEEEECC----CCchHHHHHHHHHh---CCCCeEEEeCCCCCHHH--HHhhhcccCCcCEEEECCCCCCCCCCCchhH
Q 046651 5 VRTLLIDNY----DSYTYNIYQELSTI---NGVPPVVVRNDEWTWRD--ICRYLYEENAFDNIVISPGPGSPACPEDIGI 75 (392)
Q Consensus 5 ~r~LlIDny----DSyT~nl~q~L~~v---~G~~pvVV~nd~~~~ee--l~~~l~e~~~fDgIVISpGPGsp~~~~d~gi 75 (392)
++|.|+--| |+|. ++..+|.-. ++..+.+..-|..+.++ ...+. ..+|||+|.||.|.......+.
T Consensus 289 v~IalVGKYv~l~DaY~-Sv~EAL~hag~~~~~~v~i~wIdse~le~~~~~~~~---~~~dgIlVPGGFG~RG~eGkI~- 363 (533)
T COG0504 289 VTIALVGKYVELPDAYK-SVIEALKHAGIALGVKVNIKWIDSEDLEEENAAELE---KLVDGILVPGGFGYRGVEGKIA- 363 (533)
T ss_pred eEEEEEECCcCchhHHH-HHHHHHHhhhhhcCCceeeEEEccccccccchhhhh---hcCCEEEeCCCCCcCchHHHHH-
Confidence 788888655 5565 455555432 55555544444332222 11111 1289999999998665443332
Q ss_pred HHHHHHHcCCCCEEEEcHHHHHHHHHhCCeeeec------------CCCceeceeE-----------------EE-ecCC
Q 046651 76 CLRVLLECWDVPILGVCLGHQALGFVHGADIVHA------------PEPVHGRLSE-----------------IV-HNGD 125 (392)
Q Consensus 76 ~~~ll~~~~~iPILGVCLGhQ~La~a~Gg~V~~a------------pep~hG~~s~-----------------i~-h~g~ 125 (392)
..+..++. ++|+||||||||+....+--.|... +.|+.....+ .. ..|+
T Consensus 364 Ai~yAREn-~iP~lGIClGmQ~aviE~ARnv~Gl~~AnS~Efdp~t~~pVv~l~~eq~~~~~lGGTmRLG~y~~~l~~gT 442 (533)
T COG0504 364 AIRYAREN-NIPFLGICLGMQLAVIEFARNVLGLEGANSTEFDPDTKYPVVDLMPEQKDVVDLGGTMRLGAYPCRLKPGT 442 (533)
T ss_pred HHHHHHhc-CCCEEEEchhHHHHHHHHHHHhcCCccCcccccCCCCCCceEEeccccccCCcCCceeeccceeeecCCCc
Confidence 23444554 9999999999998776533222211 1122111111 01 1122
Q ss_pred cccccCCCCCCcceEEEeeecceeecCCCC----CCcEEEEEecCCCCccccccCCCCCCCcccccchhhhhhccccccc
Q 046651 126 RLFHDIPSGQNSGFKVVRYHSLIIDADSLP----KELIPIAWSNSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQ 201 (392)
Q Consensus 126 ~LF~~ips~~~s~f~VvryHSl~V~~~sLP----~~l~~iAwt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (392)
.+.+-.... ...--.-|.|.|.++..+ .+|+..+|+.+ +
T Consensus 443 ~a~~lY~~~---~v~ERHRHRYEvN~~y~~~le~~Gl~~sg~s~d--------------~-------------------- 485 (533)
T COG0504 443 LAAKLYGKD---EIYERHRHRYEVNNDYRDQLEKAGLVFSGTSPD--------------G-------------------- 485 (533)
T ss_pred HHHHHhCCC---eeeeeccchhhcCHHHHHHHHhCCeEEEEEcCC--------------C--------------------
Confidence 121111111 022224578888775322 47888888876 3
Q ss_pred ccCCCcccccccccCCcceEEEEEecCCCEE-EEeccCCCCCCch-hHHHHHHHHHHHHHhhh
Q 046651 202 IKNGSYRHSIYSNRMRREVLMGIMHSTRPHY-GVQFHPESIATCY-GSKILRNFREITEDYWK 262 (392)
Q Consensus 202 ~~~g~~~~~~~~~~~~~~~vmgi~h~~~P~~-GVQFHPEsiat~~-G~~I~~NF~~l~~~~~~ 262 (392)
..++.++..++|+| |+|||||..+.+. .+.+|..|++.+.++.+
T Consensus 486 -----------------~lvEivE~~~hpfFv~~QfHPEf~SrP~~phPlf~~fv~Aa~~~~~ 531 (533)
T COG0504 486 -----------------GLVEIVELPDHPFFVATQFHPEFKSRPLRPHPLFVGFVKAALEYKK 531 (533)
T ss_pred -----------------CeEEEEEcCCCceEEEEcccccccCCCCCCCccHHHHHHHHHHhhc
Confidence 28999999999987 9999999988776 79999999999987643
|
|
| >PLN02832 glutamine amidotransferase subunit of pyridoxal 5'-phosphate synthase complex | Back alignment and domain information |
|---|
Probab=99.58 E-value=4.8e-14 Score=136.00 Aligned_cols=83 Identities=19% Similarity=0.277 Sum_probs=58.1
Q ss_pred ccEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCch----hHHHHH
Q 046651 4 FVRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDI----GICLRV 79 (392)
Q Consensus 4 ~~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~----gi~~~l 79 (392)
.||++|+.++..+... .+.|++ +|.++++++.. +++ ..+|+|||.||.. ++...+ + ..+.
T Consensus 1 ~m~igVLa~qG~~~e~-~~aL~~-lG~ev~~v~~~----~~L-------~~~DgLILPGGfs--~~~~~L~~~~g-l~~~ 64 (248)
T PLN02832 1 MMAIGVLALQGSFNEH-IAALRR-LGVEAVEVRKP----EQL-------EGVSGLIIPGGES--TTMAKLAERHN-LFPA 64 (248)
T ss_pred CcEEEEEeCCCchHHH-HHHHHH-CCCcEEEeCCH----HHh-------ccCCEEEeCCCHH--HHHHHHHhhcc-hHHH
Confidence 4889999999998866 477877 79999887652 454 4599999954332 222111 2 2233
Q ss_pred HHH--cCCCCEEEEcHHHHHHHHHh
Q 046651 80 LLE--CWDVPILGVCLGHQALGFVH 102 (392)
Q Consensus 80 l~~--~~~iPILGVCLGhQ~La~a~ 102 (392)
|++ ..++||||||+|||+|+...
T Consensus 65 I~~~v~~g~PvLGiC~GmqlLa~~~ 89 (248)
T PLN02832 65 LREFVKSGKPVWGTCAGLIFLAERA 89 (248)
T ss_pred HHHHHHcCCCEEEEChhHHHHHHHh
Confidence 333 25899999999999999874
|
|
| >PRK01175 phosphoribosylformylglycinamidine synthase I; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=6.9e-13 Score=128.91 Aligned_cols=93 Identities=19% Similarity=0.274 Sum_probs=62.9
Q ss_pred CccEEEEEECCCCc-hHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCC-------ch-
Q 046651 3 EFVRTLLIDNYDSY-TYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPE-------DI- 73 (392)
Q Consensus 3 ~~~r~LlIDnyDSy-T~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~-------d~- 73 (392)
..||++||...+++ ...++.+|++ .|.++++|...+.. +....+ ..||+|||.||.+..+... ..
T Consensus 2 ~~~kvaVl~~pG~n~d~e~~~Al~~-aG~~v~~v~~~~~~--~~~~~l---~~~DgLvipGGfs~gD~l~~g~~~~~~l~ 75 (261)
T PRK01175 2 ESIRVAVLRMEGTNCEDETVKAFRR-LGVEPEYVHINDLA--AERKSV---SDYDCLVIPGGFSAGDYIRAGAIFAARLK 75 (261)
T ss_pred CCCEEEEEeCCCCCCHHHHHHHHHH-CCCcEEEEeecccc--ccccch---hhCCEEEECCCCCcccccccchhhHHHHH
Confidence 46899999998776 6778899988 79999888764421 111111 5699999988753222111 11
Q ss_pred hHHHHHHHH--cCCCCEEEEcHHHHHHHHH
Q 046651 74 GICLRVLLE--CWDVPILGVCLGHQALGFV 101 (392)
Q Consensus 74 gi~~~ll~~--~~~iPILGVCLGhQ~La~a 101 (392)
..+.+.|++ ..++||||||+|+|+|+.+
T Consensus 76 ~~l~~~Ik~f~~~gkpVLGICnG~QlLa~~ 105 (261)
T PRK01175 76 AVLRKDIEEFIDEGYPIIGICNGFQVLVEL 105 (261)
T ss_pred HHHHHHHHHHHHCCCeEEEECHHHHHHHHC
Confidence 112244444 3599999999999999985
|
|
| >COG0047 PurL Phosphoribosylformylglycinamidine (FGAM) synthase, glutamine amidotransferase domain [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.44 E-value=4.2e-12 Score=120.26 Aligned_cols=202 Identities=17% Similarity=0.211 Sum_probs=128.7
Q ss_pred ccEEEEEECCCCc-hHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCC---C---CchhHH
Q 046651 4 FVRTLLIDNYDSY-TYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPAC---P---EDIGIC 76 (392)
Q Consensus 4 ~~r~LlIDnyDSy-T~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~---~---~d~gi~ 76 (392)
+||+.||-...++ .+..+.++.. +|.+++.|...+.... ++||+||+.||. |-.+ . +.+.-.
T Consensus 2 ~~kvaVi~fpGtN~d~d~~~A~~~-aG~~~~~V~~~d~~~~---------~~~d~vv~pGGF-SyGDyLr~Gaiaa~~~v 70 (231)
T COG0047 2 RPKVAVLRFPGTNCDYDMAAAFER-AGFEAEDVWHSDLLLG---------RDFDGVVLPGGF-SYGDYLRAGAIAAIAPV 70 (231)
T ss_pred CceEEEEEcCCcCchHHHHHHHHH-cCCCceEEEeeecccC---------CCccEEEEcCCC-CcccccCcchHHhhHHH
Confidence 6899999998887 5788999985 8999999987664221 269999996664 2211 1 111112
Q ss_pred HHHHHH--cCCCCEEEEcHHHHHHHHH---hCCeeeecCCCceeceeE--EEecCCcccccCCCCCCcceEEEeeec---
Q 046651 77 LRVLLE--CWDVPILGVCLGHQALGFV---HGADIVHAPEPVHGRLSE--IVHNGDRLFHDIPSGQNSGFKVVRYHS--- 146 (392)
Q Consensus 77 ~~ll~~--~~~iPILGVCLGhQ~La~a---~Gg~V~~apep~hG~~s~--i~h~g~~LF~~ips~~~s~f~VvryHS--- 146 (392)
++-+++ ..+.|+||||.|+|+|.++ -|+-+.....-+..+... |+.+.+.++.++..+. .+.+.--|.
T Consensus 71 ~~~v~~~a~~g~~vLGICNGfQiL~e~gLlPGal~~N~s~~F~cr~v~l~V~~~~t~ft~~~~~g~--~i~ipVAHgEGr 148 (231)
T COG0047 71 MDEVREFAEKGKPVLGICNGFQILSEAGLLPGALTRNESLRFECRWVYLRVENNNTPFTSGYEGGE--VIPIPVAHGEGR 148 (231)
T ss_pred HHHHHHHHHCCCeEEEEcchhHHHHHcCcCCcceecCCCCceEEEEEEEEEecCCCHHHHhcCCCc--eEEEEEeeccee
Confidence 222222 3699999999999999976 355555555556666655 3456677777776642 255544452
Q ss_pred ceeecCC---CC-CCcEEEEEecCCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCcccccccccCCcceEE
Q 046651 147 LIIDADS---LP-KELIPIAWSNSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLM 222 (392)
Q Consensus 147 l~V~~~s---LP-~~l~~iAwt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vm 222 (392)
+.++.+. |- ++.+++-+.+.. + +-+...||+++.. -|.
T Consensus 149 ~~~~~~~l~~l~~ngqvvfrY~d~~-------------G--------~~~~~~NPNGS~~-----------------~Ia 190 (231)
T COG0047 149 YYADDETLAELEENGQVVFRYVDNN-------------G--------ETEEYANPNGSVN-----------------GIA 190 (231)
T ss_pred EEccHHHHHHHhhCCeEEEEEecCC-------------C--------ceeeeeCCCCChh-----------------hce
Confidence 3333221 22 233444444331 1 0011134444333 799
Q ss_pred EEEecCCCEEEEeccCCCCC-----CchhHHHHHHHHHH
Q 046651 223 GIMHSTRPHYGVQFHPESIA-----TCYGSKILRNFREI 256 (392)
Q Consensus 223 gi~h~~~P~~GVQFHPEsia-----t~~G~~I~~NF~~l 256 (392)
||...+.++.|++-|||++. +++|..||++.++.
T Consensus 191 GI~n~~G~V~gmMPHPERa~~~~~g~~Dg~~lF~s~~~~ 229 (231)
T COG0047 191 GITNEDGNVLGMMPHPERASESLLGGEDGLRLFRSARKY 229 (231)
T ss_pred eEEcCCCCEEEecCCchhhhhcccCCchHHHHHHHHHHh
Confidence 99999999999999999975 56789999998764
|
|
| >cd01740 GATase1_FGAR_AT Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.2e-12 Score=123.32 Aligned_cols=201 Identities=15% Similarity=0.169 Sum_probs=116.1
Q ss_pred EEEEECCCCc-hHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCC-----chhH-HHHH
Q 046651 7 TLLIDNYDSY-TYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPE-----DIGI-CLRV 79 (392)
Q Consensus 7 ~LlIDnyDSy-T~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~-----d~gi-~~~l 79 (392)
++||-.+.++ .+.++..|++ .|+++++|..++. .+. ...+ ..||+|||+||+...+... .... ..++
T Consensus 1 v~vl~~pG~n~~~~~~~al~~-aG~~v~~v~~~~~-~~~-~~~l---~~~d~liipGG~~~~d~l~~~~~~~~~~~~~~~ 74 (238)
T cd01740 1 VAVLRFPGSNCDRDMAYAFEL-AGFEAEDVWHNDL-LAG-RKDL---DDYDGVVLPGGFSYGDYLRAGAIAAASPLLMEE 74 (238)
T ss_pred CEEEEcCCcCCHHHHHHHHHH-cCCCEEEEeccCC-ccc-cCCH---hhCCEEEECCCCCcccccccccccccChhHHHH
Confidence 3566666564 5678899988 7999999987653 111 0011 5699999988874322211 1111 3445
Q ss_pred HHH--cCCCCEEEEcHHHHHHHHH--hCCeeeecCCCceece-----eE--EEecCCcccccCCCCCCcceEEEeeecc-
Q 046651 80 LLE--CWDVPILGVCLGHQALGFV--HGADIVHAPEPVHGRL-----SE--IVHNGDRLFHDIPSGQNSGFKVVRYHSL- 147 (392)
Q Consensus 80 l~~--~~~iPILGVCLGhQ~La~a--~Gg~V~~apep~hG~~-----s~--i~h~g~~LF~~ips~~~s~f~VvryHSl- 147 (392)
+++ ..++||||||.|+|+|+.+ +++++...+....... .. |..+++.++..+..+ +.+.+.--|..
T Consensus 75 l~~~~~~g~pvlGIC~G~QlL~~~gll~g~~~~~~~~~~~~~~~~~~v~~~v~~~~si~t~~~~~g--~~l~~~vaHgeG 152 (238)
T cd01740 75 VKEFAERGGLVLGICNGFQILVELGLLPGALIRNKGLKFICRWQNRFVTLRVENNDSPFTKGYMEG--EVLRIPVAHGEG 152 (238)
T ss_pred HHHHHhCCCeEEEECcHHHHHHHcCCCccccccCCCCceeccccCceEEEEEcCCCCceecCCCCC--CEEEEEeECCce
Confidence 544 3599999999999999997 7888877665444321 11 334456666653221 12666666643
Q ss_pred --eeecCCC----CCCcEEEEEecCCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCcccccccccCCcceE
Q 046651 148 --IIDADSL----PKELIPIAWSNSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVL 221 (392)
Q Consensus 148 --~V~~~sL----P~~l~~iAwt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v 221 (392)
..+++.| ..+.+. -+.+.. + ......-.||+++. .-|
T Consensus 153 ~~~~~~~~~~~l~~~~~i~-~y~~~~-------------~------~~~~~yp~NPnGs~-----------------~~i 195 (238)
T cd01740 153 RFYADDETLAELEENGQIA-QYVDDD-------------G------NVTERYPANPNGSL-----------------DGI 195 (238)
T ss_pred eeEcCHHHHHHHHHCCCEE-EEEcCC-------------C------CccccCCCCCCCCh-----------------hcc
Confidence 2222111 112222 222110 1 00001112233221 269
Q ss_pred EEEEecCCCEEEEeccCCCCCCc----------hhHHHHHH
Q 046651 222 MGIMHSTRPHYGVQFHPESIATC----------YGSKILRN 252 (392)
Q Consensus 222 mgi~h~~~P~~GVQFHPEsiat~----------~G~~I~~N 252 (392)
.||...+..++|+..|||+.... .|.+||+|
T Consensus 196 Agi~~~~GrvlglMphPer~~~~~q~~~~~~~~~~~~~F~~ 236 (238)
T cd01740 196 AGICNEDGRVLGMMPHPERAVEPWQWERLLGGSDGLKLFRN 236 (238)
T ss_pred eEEEcCCCCEEEEcCChHHcccccccccccCCCccHHHHhh
Confidence 99999999999999999996543 57788876
|
Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase (FGAR-AT). FGAR-AT catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to formylglycinamidine ribonucleotide (FGAM), ADP, Pi, and glutamate in the fourth step of the purine biosynthetic pathway. FGAR-AT is a glutamine amidotransferase. Glutamine amidotransferase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. FGAR-AT belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site |
| >KOG0623 consensus Glutamine amidotransferase/cyclase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.2e-11 Score=122.74 Aligned_cols=178 Identities=26% Similarity=0.280 Sum_probs=121.0
Q ss_pred EEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCC----chhHHHHHHHH
Q 046651 7 TLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPE----DIGICLRVLLE 82 (392)
Q Consensus 7 ~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~----d~gi~~~ll~~ 82 (392)
+-|||....+..+|-.+|+- +|..+.-|++ ..|+. ..|.+|+ ||.|.....- ..|... -|++
T Consensus 4 v~~ld~~agn~~si~nal~h-lg~~i~~v~~----P~DI~-------~a~rLIf-PGVGnfg~~~D~L~~~Gf~e-plr~ 69 (541)
T KOG0623|consen 4 VTLLDYGAGNVRSIRNALRH-LGFSIKDVQT----PGDIL-------NADRLIF-PGVGNFGPAMDVLNRTGFAE-PLRK 69 (541)
T ss_pred EEEEecCCccHHHHHHHHHh-cCceeeeccC----chhhc-------cCceEee-cCcccchHHHHHHhhhhhHH-HHHH
Confidence 56889888888899999987 8999877764 34553 4788888 8888765322 234332 2333
Q ss_pred --cCCCCEEEEcHHHHHHHHH-------hC-----Ceeeec-----CCCceeceeEEEecCCcccccCCCCCCcceEEEe
Q 046651 83 --CWDVPILGVCLGHQALGFV-------HG-----ADIVHA-----PEPVHGRLSEIVHNGDRLFHDIPSGQNSGFKVVR 143 (392)
Q Consensus 83 --~~~iPILGVCLGhQ~La~a-------~G-----g~V~~a-----pep~hG~~s~i~h~g~~LF~~ips~~~s~f~Vvr 143 (392)
..++|++|||+|.|+|... -| +.|.+. +-|+.||.+.-...++.+|...|.. +++.
T Consensus 70 YiesgkPfmgicvGlQaLF~gSvE~p~skGLgvipg~v~RFD~s~k~VPhIGWNsc~v~sd~effg~~p~~-----~~YF 144 (541)
T KOG0623|consen 70 YIESGKPFMGICVGLQALFDGSVENPPSKGLGVIPGIVGRFDASAKIVPHIGWNSCQVGSDSEFFGDVPNR-----HVYF 144 (541)
T ss_pred HHhcCCCeEeehhhHHHHhcccccCCCcCcccccccceecccCCCCcCCcccccccccCCcccccccCCCc-----eEEE
Confidence 3599999999999999763 01 222221 2357777776445566777777765 6788
Q ss_pred eecceeecC--CCCCCcEEEEEecCCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCcccccccccCCcceE
Q 046651 144 YHSLIIDAD--SLPKELIPIAWSNSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVL 221 (392)
Q Consensus 144 yHSl~V~~~--sLP~~l~~iAwt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v 221 (392)
.||+.+.+. +|+..--.+|.+.+ ++.+ .|
T Consensus 145 VHSyl~~ek~~~len~~wkiat~kY--------------G~E~-----------------------------------Fi 175 (541)
T KOG0623|consen 145 VHSYLNREKPKSLENKDWKIATCKY--------------GSES-----------------------------------FI 175 (541)
T ss_pred EeeecccccccCCCCCCceEeeecc--------------CcHH-----------------------------------HH
Confidence 899976552 24333223555555 4222 45
Q ss_pred EEEEecCCCEEEEeccCCCCCCchhHHHHHHHHH
Q 046651 222 MGIMHSTRPHYGVQFHPESIATCYGSKILRNFRE 255 (392)
Q Consensus 222 mgi~h~~~P~~GVQFHPEsiat~~G~~I~~NF~~ 255 (392)
.+| ...+++++|||||+ +.+.|...+++|+.
T Consensus 176 ~ai--~knN~~AtQFHPEK-SG~aGL~vl~~FL~ 206 (541)
T KOG0623|consen 176 SAI--RKNNVHATQFHPEK-SGEAGLSVLRRFLH 206 (541)
T ss_pred HHH--hcCceeeEeccccc-ccchhHHHHHHHHh
Confidence 556 35689999999999 88899999999996
|
|
| >PRK13526 glutamine amidotransferase subunit PdxT; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=7.2e-11 Score=109.02 Aligned_cols=167 Identities=16% Similarity=0.191 Sum_probs=106.5
Q ss_pred cEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCC--CCCCchhHHHHHHHH
Q 046651 5 VRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSP--ACPEDIGICLRVLLE 82 (392)
Q Consensus 5 ~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp--~~~~d~gi~~~ll~~ 82 (392)
||+.++.-+..+.. -...|.. .|.++++++. .+++ ..+|+|||.||+++. ....+.+ +.+.|++
T Consensus 3 ~~igVLalqG~~~E-h~~al~~-lG~~v~~v~~----~~~l-------~~~D~LILPGG~~t~~~~ll~~~~-l~~~Ik~ 68 (179)
T PRK13526 3 QKVGVLAIQGGYQK-HADMFKS-LGVEVKLVKF----NNDF-------DSIDRLVIPGGESTTLLNLLNKHQ-IFDKLYN 68 (179)
T ss_pred cEEEEEECCccHHH-HHHHHHH-cCCcEEEECC----HHHH-------hCCCEEEECCChHHHHHHHhhhcC-cHHHHHH
Confidence 89999999888875 5566766 6888877763 3454 459999997665443 1122223 2344444
Q ss_pred -cCCCCEEEEcHHHHHHHHH---hC---CeeeecCCCceeceeEEEecCCcccccCCCCCCcceEEEeeecceeecCCCC
Q 046651 83 -CWDVPILGVCLGHQALGFV---HG---ADIVHAPEPVHGRLSEIVHNGDRLFHDIPSGQNSGFKVVRYHSLIIDADSLP 155 (392)
Q Consensus 83 -~~~iPILGVCLGhQ~La~a---~G---g~V~~apep~hG~~s~i~h~g~~LF~~ips~~~s~f~VvryHSl~V~~~sLP 155 (392)
..++|++|||.|+|+|+.. +| ++|.+.. +|+...-....-. +.++ . |+.++..--.|.+ ..
T Consensus 69 ~~~~kpilGICaG~qlL~~~s~~Lg~idg~V~Rn~---~Grq~~sf~~~~~-~~~~--~----~~~vFiRAP~i~~--~~ 136 (179)
T PRK13526 69 FCSSKPVFGTCAGSIILSKGEGYLNLLDLEVQRNA---YGRQVDSFVADIS-FNDK--N----ITGVFIRAPKFIV--VG 136 (179)
T ss_pred HHcCCcEEEEcHHHHHHHccCCCCCCccEEEEEcC---CCCccceeeeecC-cCCc--e----EEEEEEcCceEeE--cC
Confidence 2367999999999999983 22 4444433 2222110000000 1122 2 7788888888877 77
Q ss_pred CCcEEEEEecCCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCcccccccccCCcceEEEEEecCCCEEEEe
Q 046651 156 KELIPIAWSNSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGIMHSTRPHYGVQ 235 (392)
Q Consensus 156 ~~l~~iAwt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vmgi~h~~~P~~GVQ 235 (392)
++++++|+-++ .+-++ +..++.+.-
T Consensus 137 ~~v~vla~~~~-----------------------------------------------------~~v~v--~q~~~l~~~ 161 (179)
T PRK13526 137 NQVDILSKYQN-----------------------------------------------------SPVLL--RQANILVSS 161 (179)
T ss_pred CCcEEEEEECC-----------------------------------------------------EEEEE--EECCEEEEE
Confidence 89999998754 34455 467899999
Q ss_pred ccCCCCCCchhHHHHHHHHH
Q 046651 236 FHPESIATCYGSKILRNFRE 255 (392)
Q Consensus 236 FHPEsiat~~G~~I~~NF~~ 255 (392)
||||- |. ..++.+.|++
T Consensus 162 FHPEl--t~-d~r~h~~f~~ 178 (179)
T PRK13526 162 FHPEL--TQ-DPTVHEYFLA 178 (179)
T ss_pred eCCcc--CC-CchHHHHHhc
Confidence 99998 32 3477777765
|
|
| >KOG2387 consensus CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.22 E-value=3.7e-11 Score=122.52 Aligned_cols=49 Identities=27% Similarity=0.421 Sum_probs=35.1
Q ss_pred CCcCEEEECCCCCCCCCCCchhHHHHHHHHcCCCCEEEEcHHHHHHHHHhC
Q 046651 53 NAFDNIVISPGPGSPACPEDIGICLRVLLECWDVPILGVCLGHQALGFVHG 103 (392)
Q Consensus 53 ~~fDgIVISpGPGsp~~~~d~gi~~~ll~~~~~iPILGVCLGhQ~La~a~G 103 (392)
...|||++.||.|+......+. ..++.++. ++|.||||||||+-..-+-
T Consensus 362 ~~adGilvPGGFG~RGveG~i~-Aak~ARen-~iP~LGiCLGmQ~AvIEfa 410 (585)
T KOG2387|consen 362 KSADGILVPGGFGDRGVEGKIL-AAKWAREN-KIPFLGICLGMQLAVIEFA 410 (585)
T ss_pred ccCCeEEeCCcccccchhHHHH-HHHHHHhc-CCCeEeeehhhhHHHHHHH
Confidence 3589999998888765433332 23444554 9999999999998766543
|
|
| >KOG1559 consensus Gamma-glutamyl hydrolase [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.9e-10 Score=110.03 Aligned_cols=171 Identities=18% Similarity=0.256 Sum_probs=100.9
Q ss_pred HHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCch--hHHHHHHHH---cCCCCEEEEcHHHHH
Q 046651 23 ELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDI--GICLRVLLE---CWDVPILGVCLGHQA 97 (392)
Q Consensus 23 ~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~--gi~~~ll~~---~~~iPILGVCLGhQ~ 97 (392)
.+++..|+.++.+..+++ -+.+...| .-.+|||++||-..-....++ .+....++. -..+||+|+|||+.+
T Consensus 84 K~aEsgGARViPli~nep-Ee~lfqkl---elvNGviftGGwak~~dY~~vvkkifnk~le~nDaGehFPvyg~CLGFE~ 159 (340)
T KOG1559|consen 84 KLAESGGARVIPLIYNEP-EEILFQKL---ELVNGVIFTGGWAKRGDYFEVVKKIFNKVLERNDAGEHFPVYGICLGFEL 159 (340)
T ss_pred HHHHcCCceEEEEecCCc-HHHHHHHH---HHhceeEecCcccccccHHHHHHHHHHHHHhccCCccccchhhhhhhHHH
Confidence 445558999999999997 44444444 668999998885443322221 222344443 137999999999999
Q ss_pred HHHHh--CCeeeecCCCceeceeEEE-----ecCCcccccCCCCCC----cceEEEeeecceeecCCCC------CCcEE
Q 046651 98 LGFVH--GADIVHAPEPVHGRLSEIV-----HNGDRLFHDIPSGQN----SGFKVVRYHSLIIDADSLP------KELIP 160 (392)
Q Consensus 98 La~a~--Gg~V~~apep~hG~~s~i~-----h~g~~LF~~ips~~~----s~f~VvryHSl~V~~~sLP------~~l~~ 160 (392)
|.... |..+...-..+.- .+.+. .....+|+.+|.... ..--|.+.|.+.|.+.+.. .-+.+
T Consensus 160 lsmiISqnrdile~~d~vd~-AssLqF~~nvn~~~t~FQrFPpELLkkL~~dcLvmq~Hk~gisp~nF~~N~~Ls~FFni 238 (340)
T KOG1559|consen 160 LSMIISQNRDILERFDAVDV-ASSLQFVGNVNIHGTMFQRFPPELLKKLSTDCLVMQNHKFGISPKNFQGNPALSSFFNI 238 (340)
T ss_pred HHHHHhcChhHHHhhccccc-ccceeeecccceeehhHhhCCHHHHHHhccchheeeccccccchhhccCCHHHHHHHhh
Confidence 99874 2222221111100 01111 113467888776521 0124678899888775321 12222
Q ss_pred EEEecCCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCcccccccccCCcceEEEEEecCCCEEEEeccCCC
Q 046651 161 IAWSNSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGIMHSTRPHYGVQFHPES 240 (392)
Q Consensus 161 iAwt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vmgi~h~~~P~~GVQFHPEs 240 (392)
+..+.| + .....|..++....|++|+|||||+
T Consensus 239 lTT~~D--------------~----------------------------------~~k~fvSTv~~~kYPvtgfQWHPEK 270 (340)
T KOG1559|consen 239 LTTCTD--------------G----------------------------------NSKTFVSTVESKKYPVTGFQWHPEK 270 (340)
T ss_pred eeeecC--------------C----------------------------------CceEEEEeecceeccceeeeecCcc
Confidence 222222 1 1122788888888999999999999
Q ss_pred CCCchh
Q 046651 241 IATCYG 246 (392)
Q Consensus 241 iat~~G 246 (392)
.+-++|
T Consensus 271 nafEWg 276 (340)
T KOG1559|consen 271 NAFEWG 276 (340)
T ss_pred Cccccc
Confidence 876655
|
|
| >PF13507 GATase_5: CobB/CobQ-like glutamine amidotransferase domain; PDB: 3D54_L 3UMM_A 3UJN_A 3UGJ_A 1T3T_A | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.3e-08 Score=99.20 Aligned_cols=92 Identities=17% Similarity=0.177 Sum_probs=54.4
Q ss_pred ccEEEEEECCCCc-hHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCC-chhH------
Q 046651 4 FVRTLLIDNYDSY-TYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPE-DIGI------ 75 (392)
Q Consensus 4 ~~r~LlIDnyDSy-T~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~-d~gi------ 75 (392)
++|++|+-...+. .+.++.+++. .|++++.|...+. +++- ..| .+||+|||.||.+--+... ...+
T Consensus 1 kpkV~Vl~~pGtNce~e~~~A~~~-aG~~~~~v~~~dl-~~~~-~~l---~~~~~lvipGGFS~gD~l~sg~~~a~~~~~ 74 (259)
T PF13507_consen 1 KPKVAVLRFPGTNCERETAAAFEN-AGFEPEIVHINDL-LSGE-SDL---DDFDGLVIPGGFSYGDYLRSGAIAAARLLF 74 (259)
T ss_dssp --EEEEEE-TTEEEHHHHHHHHHC-TT-EEEEEECCHH-HTTS---G---CC-SEEEE-EE-GGGGTTSTTHHHHHHHCC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH-cCCCceEEEEEec-cccc-Cch---hhCcEEEECCccCccccchHHHHHHHHhhc
Confidence 3799999998887 5789999988 6999988875442 2210 112 7899999977764322211 1111
Q ss_pred ---HHHHHHH---cCCCCEEEEcHHHHHHHHH
Q 046651 76 ---CLRVLLE---CWDVPILGVCLGHQALGFV 101 (392)
Q Consensus 76 ---~~~ll~~---~~~iPILGVCLGhQ~La~a 101 (392)
+.+.|++ ..+.||||||.|+|+|...
T Consensus 75 ~~~~~~~i~~f~~~~g~~vLGIcNGfQiL~~~ 106 (259)
T PF13507_consen 75 NSPLMDAIREFLERPGGFVLGICNGFQILVEL 106 (259)
T ss_dssp SCCCHHHHHHHHHCTT-EEEEECHHHHHHCCC
T ss_pred cHHHHHHHHHHHhcCCCeEEEEchHhHHHHHh
Confidence 1222222 2399999999999999886
|
|
| >TIGR01857 FGAM-synthase phosphoribosylformylglycinamidine synthase, clade II | Back alignment and domain information |
|---|
Probab=98.86 E-value=9e-08 Score=109.51 Aligned_cols=211 Identities=14% Similarity=0.147 Sum_probs=121.5
Q ss_pred CccEEEEEECCCCc-hHHHHHHHHHhCCCCeEEEeCCCCC-------HHHHHhhhcccCCcCEEEECCCCCCCCCC---C
Q 046651 3 EFVRTLLIDNYDSY-TYNIYQELSTINGVPPVVVRNDEWT-------WRDICRYLYEENAFDNIVISPGPGSPACP---E 71 (392)
Q Consensus 3 ~~~r~LlIDnyDSy-T~nl~q~L~~v~G~~pvVV~nd~~~-------~eel~~~l~e~~~fDgIVISpGPGsp~~~---~ 71 (392)
..||++|+-...++ .+..+.++.+ +|++++.|...+.. .+++...| ..|++|+|.||..-=+.+ .
T Consensus 976 ~kpkvaIl~~pGtNce~d~a~Af~~-aG~~~~~v~~~dl~~~~i~~s~~~~~~~l---~~~~~l~~pGGFSyGD~l~~~~ 1051 (1239)
T TIGR01857 976 EKPRVVIPVFPGTNSEYDSAKAFEK-EGAEVNLVIFRNLNEEALVESVETMVDEI---DKSQILMLPGGFSAGDEPDGSA 1051 (1239)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH-cCCceEEEEEecCcccccccchhhhhccc---ccCcEEEEcCccCcccccchhH
Confidence 46999999999887 4778999987 79888777654421 22222223 679999997776332222 1
Q ss_pred ch--hH-----HHHHHHH--cCCCCEEEEcHHHHHHHHH---hCCeeeecCC-----------CceeceeE--EEecCCc
Q 046651 72 DI--GI-----CLRVLLE--CWDVPILGVCLGHQALGFV---HGADIVHAPE-----------PVHGRLSE--IVHNGDR 126 (392)
Q Consensus 72 d~--gi-----~~~ll~~--~~~iPILGVCLGhQ~La~a---~Gg~V~~ape-----------p~hG~~s~--i~h~g~~ 126 (392)
.+ .+ +.+-+.+ .++.++||||.|+|+|... .++++....+ -+..+... |..+.++
T Consensus 1052 ~~~aa~~~n~~~~~~~~~f~~~d~~~LGICNGfQ~L~~lGLlP~~~~~~~~~~~p~l~~N~s~rf~~r~v~~~v~~~~s~ 1131 (1239)
T TIGR01857 1052 KFIAAILRNPKVRVAIDSFLARDGLILGICNGFQALVKSGLLPYGNIEAANETSPTLTYNDINRHVSKIVRTRIASTNSP 1131 (1239)
T ss_pred HHHHHHhhChHHHHHHHHHHhCCCcEEEechHHHHHHHcCCCcCccccccccCCceeeecCCCCeEEeeeEEEECCCCCh
Confidence 11 11 1111222 3699999999999999886 2333322111 12222222 3345678
Q ss_pred ccccCCCCCCcceEEEeeecc---eeecCCC----CCCcEEEEEecCCCCccccccCCCCCCCcccccchhhhhhccccc
Q 046651 127 LFHDIPSGQNSGFKVVRYHSL---IIDADSL----PKELIPIAWSNSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDIS 199 (392)
Q Consensus 127 LF~~ips~~~s~f~VvryHSl---~V~~~sL----P~~l~~iAwt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (392)
++.++..+. .+.+.--|.. ..+++.| -.+.+.+-+.+.. + ......-.||++
T Consensus 1132 ~~~~~~~g~--~~~ipvaHgEGrf~~~~~~l~~l~~~~qva~rYvd~~-------------g------~~t~~~p~NPNG 1190 (1239)
T TIGR01857 1132 WLSGVSVGD--IHAIPVSHGEGRFVASDEVLAELRENGQIATQYVDFN-------------G------KPSMDSKYNPNG 1190 (1239)
T ss_pred hHhcCCCCC--EEEEEeEcCCcceecCHHHHHHHHHCCcEEEEEeCCC-------------C------CcccCCCCCCCC
Confidence 887776442 2555545532 2221111 1244555554331 1 000011223433
Q ss_pred ccccCCCcccccccccCCcceEEEEEecCCCEEEEeccCCCCCC--------chhHHHHHHHHH
Q 046651 200 TQIKNGSYRHSIYSNRMRREVLMGIMHSTRPHYGVQFHPESIAT--------CYGSKILRNFRE 255 (392)
Q Consensus 200 ~~~~~g~~~~~~~~~~~~~~~vmgi~h~~~P~~GVQFHPEsiat--------~~G~~I~~NF~~ 255 (392)
+.. -|.||...+..++|.+-||||... ..|..||+|..+
T Consensus 1191 S~~-----------------~IaGi~s~dGrvlg~MpHpER~~~~~~~~~~g~~~~~iF~~~v~ 1237 (1239)
T TIGR01857 1191 SSL-----------------AIEGITSPDGRIFGKMGHSERYGDGLFKNIPGNKDQHLFASGVK 1237 (1239)
T ss_pred Chh-----------------hhhEeECCCCCEEEECCCcccccCcccCCCCchhhhHHHHHHHh
Confidence 332 799999999999999999999642 235899988764
|
This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This model represents a second clade of these enzymes found in Clostridia, Bifidobacteria and Streptococcus species. This enzyme performs the fourth step in IMP biosynthesis (the precursor of all purines) from PRPP. |
| >cd03131 GATase1_HTS Type 1 glutamine amidotransferase (GATase1)-like domain found in homoserine trans-succinylase (HTS) | Back alignment and domain information |
|---|
Probab=98.69 E-value=2.7e-08 Score=91.68 Aligned_cols=106 Identities=17% Similarity=0.209 Sum_probs=74.5
Q ss_pred CCcCEEEECCCCCCCCCCCch---hHHHHHHHH--cCCCCEEEEcHHHHHHHHHhCCee-eecCCCceeceeEEEecCCc
Q 046651 53 NAFDNIVISPGPGSPACPEDI---GICLRVLLE--CWDVPILGVCLGHQALGFVHGADI-VHAPEPVHGRLSEIVHNGDR 126 (392)
Q Consensus 53 ~~fDgIVISpGPGsp~~~~d~---gi~~~ll~~--~~~iPILGVCLGhQ~La~a~Gg~V-~~apep~hG~~s~i~h~g~~ 126 (392)
..|||+||+|.|-.-...++. .-..+++.. ...+|+||||+|+|+..+++||.. ...++...|....-....++
T Consensus 61 ~~yDGlIITGApve~~~fe~v~Yw~El~~i~dwa~~~v~stl~iCWgaqaal~~~yGi~k~~~~~K~~Gvf~~~~~~~hp 140 (175)
T cd03131 61 AKFDGLIVTGAPVEHLPFEQVDYWEELTEILDWAKTHVTSTLFSCWAAMAALYYFYGIKKHQLPEKIFGVFPHTILEPHP 140 (175)
T ss_pred cCCCEEEEeCCCcccCCccccchHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHcCcccccCCCceEEEEEeeecCCCc
Confidence 789999999888654443332 222333332 237999999999999999998885 77788888855432223789
Q ss_pred ccccCCCCCCcceEEEeeecceeecCCC--CCCcEEEE
Q 046651 127 LFHDIPSGQNSGFKVVRYHSLIIDADSL--PKELIPIA 162 (392)
Q Consensus 127 LF~~ips~~~s~f~VvryHSl~V~~~sL--P~~l~~iA 162 (392)
|+.+++.. |.+-..|...|..+.+ .++|+++|
T Consensus 141 L~~g~~d~----F~~PhSR~~~v~~~~~~~~~~l~il~ 174 (175)
T cd03131 141 LLRGLDDG----FDVPHSRYAEVDREDIEEAAGLTILA 174 (175)
T ss_pred cccCCCCc----eeecCcccccCCHHHHhhCCCCEEcc
Confidence 99999988 9988777667765434 45666654
|
Type 1 glutamine amidotransferase (GATase1)-like domain found in homoserine trans-succinylase (HTS). HTS, the first enzyme in methionine biosynthesis in Escherichia coli, transfers a succinyl group from succinyl-CoA to homoserine forming succinyl homoserine. It has been suggested that the succinyl group of succinyl-CoA is initially transferred to an enzyme nucleophile before subsequent transfer to homoserine. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with GATase1 domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. It has been proposed that this cys is in the active site of the molecule. However, as succinyl has been found bound to a conserved lysine residue, this conserved cys may play a role in dimer formation. HTS acti |
| >COG0311 PDX2 Predicted glutamine amidotransferase involved in pyridoxine biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.69 E-value=3.9e-07 Score=84.36 Aligned_cols=176 Identities=16% Similarity=0.242 Sum_probs=105.4
Q ss_pred cEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCC--CCchhHHHHHHHH
Q 046651 5 VRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPAC--PEDIGICLRVLLE 82 (392)
Q Consensus 5 ~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~--~~d~gi~~~ll~~ 82 (392)
|||.++-....+...+ +.|.+..|.+++.|+. .+++ ...|++||.||-.+.-. ..+.++...+...
T Consensus 1 m~IGVLalQG~v~EH~-~~l~~~~~~e~~~Vk~----~~dL-------~~~d~LIiPGGESTTi~rL~~~~gl~e~l~~~ 68 (194)
T COG0311 1 MKIGVLALQGAVEEHL-EALEKAGGAEVVEVKR----PEDL-------EGVDGLIIPGGESTTIGRLLKRYGLLEPLREF 68 (194)
T ss_pred CeEEEEEecccHHHHH-HHHHhhcCCceEEEcC----HHHh-------ccCcEEEecCccHHHHHHHHHHcCcHHHHHHH
Confidence 6777777766665433 4455533688888764 4565 45999999666543211 2233444444333
Q ss_pred -cCCCCEEEEcHHHHHHHHH-hCCeeeecCCCceeceeE-EEec--CC--cc------cccCCCCCCcceEEEeeeccee
Q 046651 83 -CWDVPILGVCLGHQALGFV-HGADIVHAPEPVHGRLSE-IVHN--GD--RL------FHDIPSGQNSGFKVVRYHSLII 149 (392)
Q Consensus 83 -~~~iPILGVCLGhQ~La~a-~Gg~V~~apep~hG~~s~-i~h~--g~--~L------F~~ips~~~s~f~VvryHSl~V 149 (392)
..++|++|.|-|+-+|+.- .++ -..+..|.... |.-| |. .- ++++-..- .|..++...-.|
T Consensus 69 ~~~G~Pv~GTCAGlIlLakei~~~----~~~~~Lg~mdi~V~RNAfGRQ~dSFe~~~di~~~~~~~--~~~avFIRAP~I 142 (194)
T COG0311 69 IADGLPVFGTCAGLILLAKEILDG----PEQPLLGLLDVTVRRNAFGRQVDSFETELDIEGFGLPF--PFPAVFIRAPVI 142 (194)
T ss_pred HHcCCceEEechhhhhhhhhhcCC----CCCcccceEEEEEEccccccccccceeeEEeecccCCC--cceEEEEEccee
Confidence 3599999999999999954 431 22233333222 1111 10 01 11121110 055677788888
Q ss_pred ecCCCCCCcEEEEEecCCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCcccccccccCCcceEEEEEecCC
Q 046651 150 DADSLPKELIPIAWSNSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGIMHSTR 229 (392)
Q Consensus 150 ~~~sLP~~l~~iAwt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vmgi~h~~~ 229 (392)
++ ..++++++||-++ .+-|.+ +.
T Consensus 143 ~~--vg~~V~vLa~l~~-----------------------------------------------------~iVav~--qg 165 (194)
T COG0311 143 EE--VGDGVEVLATLDG-----------------------------------------------------RIVAVK--QG 165 (194)
T ss_pred eh--hcCcceEeeeeCC-----------------------------------------------------EEEEEE--eC
Confidence 77 5558999998766 444553 56
Q ss_pred CEEEEeccCCCCCCchhHHHHHHHHHHHH
Q 046651 230 PHYGVQFHPESIATCYGSKILRNFREITE 258 (392)
Q Consensus 230 P~~GVQFHPEsiat~~G~~I~~NF~~l~~ 258 (392)
++.++-||||- |.+ .++.+.|++++.
T Consensus 166 n~LatsFHPEL--T~D-~r~Heyf~~~v~ 191 (194)
T COG0311 166 NILATSFHPEL--TDD-TRLHEYFLDMVL 191 (194)
T ss_pred CEEEEecCccc--cCC-ccHHHHHHHHhh
Confidence 99999999998 322 377888888775
|
|
| >PLN03206 phosphoribosylformylglycinamidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.1e-06 Score=101.48 Aligned_cols=93 Identities=22% Similarity=0.212 Sum_probs=61.2
Q ss_pred CccEEEEEECCCCc-hHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCC--CCCCCCch---hH-
Q 046651 3 EFVRTLLIDNYDSY-TYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPG--SPACPEDI---GI- 75 (392)
Q Consensus 3 ~~~r~LlIDnyDSy-T~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPG--sp~~~~d~---gi- 75 (392)
..+|++|+-...++ .+.++.++.. .|++++.|...+. .+. ...| ..|++|||.||.. +.-..... .+
T Consensus 1036 ~~pkVaVl~~pGtN~~~e~~~Af~~-aGf~~~~V~~~dl-~~~-~~~L---~~~~glv~pGGFSyGD~l~sg~~wa~~i~ 1109 (1307)
T PLN03206 1036 SKPKVAIIREEGSNGDREMAAAFYA-AGFEPWDVTMSDL-LNG-RISL---DDFRGIVFVGGFSYADVLDSAKGWAGSIR 1109 (1307)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH-cCCceEEEEeeec-ccc-cccc---cceeEEEEcCcCCCccccchHHHHHHHHH
Confidence 46899999998887 4778899986 7999877776543 111 1112 6799999988763 22221111 11
Q ss_pred ----HHHHHHH---cCCCCEEEEcHHHHHHHHH
Q 046651 76 ----CLRVLLE---CWDVPILGVCLGHQALGFV 101 (392)
Q Consensus 76 ----~~~ll~~---~~~iPILGVCLGhQ~La~a 101 (392)
+.+-+.+ ..+.++||||.|+|+|...
T Consensus 1110 ~n~~~~~~~~~f~~~~d~~~LGICNGfQiL~~l 1142 (1307)
T PLN03206 1110 FNEPLLQQFQEFYNRPDTFSLGVCNGCQLMALL 1142 (1307)
T ss_pred hChHHHHHHHHHHhCCCceEEEEcHHHHHHHHc
Confidence 1122222 2489999999999999986
|
|
| >PF01174 SNO: SNO glutamine amidotransferase family; InterPro: IPR002161 Members of this family are involved in the pyridoxine biosynthetic pathway [, ] | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.8e-07 Score=86.85 Aligned_cols=159 Identities=21% Similarity=0.306 Sum_probs=86.8
Q ss_pred HHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCC--CCchhHHHHHHHH--cCCCCEEEEcHHHHH
Q 046651 22 QELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPAC--PEDIGICLRVLLE--CWDVPILGVCLGHQA 97 (392)
Q Consensus 22 q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~--~~d~gi~~~ll~~--~~~iPILGVCLGhQ~ 97 (392)
..|.+ +|.+++.|+.. +++ ..+|++||.||-.+.-. ....++...+... .+++||||+|-|+-+
T Consensus 13 ~~l~~-lg~~~~~Vr~~----~dL-------~~~dgLIiPGGESTti~~ll~~~gL~~~l~~~~~~g~~Pv~GTCAGlIl 80 (188)
T PF01174_consen 13 RMLER-LGAEVVEVRTP----EDL-------EGLDGLIIPGGESTTIGKLLRRYGLFEPLREFIRSGSKPVWGTCAGLIL 80 (188)
T ss_dssp HHHHH-TTSEEEEE-SG----GGG-------TT-SEEEE-SS-HHHHHHHHHHTTHHHHHHHHHHTT--EEEEETHHHHH
T ss_pred HHHHH-cCCCeEEeCCH----HHH-------ccCCEEEECCCcHHHHHHHHHHcCCHHHHHHHHHcCCCceeehhHHHHH
Confidence 34555 68888888753 455 34899999655432110 1223433333222 224999999999999
Q ss_pred HHHHhCCeeeecCCCceeceeE-EEec--CCcc--------cccCCCCCCcceEEEeeecceeecCCCCCCcEEEEEecC
Q 046651 98 LGFVHGADIVHAPEPVHGRLSE-IVHN--GDRL--------FHDIPSGQNSGFKVVRYHSLIIDADSLPKELIPIAWSNS 166 (392)
Q Consensus 98 La~a~Gg~V~~apep~hG~~s~-i~h~--g~~L--------F~~ips~~~s~f~VvryHSl~V~~~sLP~~l~~iAwt~~ 166 (392)
|+.-.... .....|.+.. |.-| |.++ +.++... |..++..--.|.+-.-|++..++|.-+.
T Consensus 81 La~~v~~~----~q~~Lg~ldi~V~RNafGrQ~~SFe~~l~i~~~~~~----~~avFIRAP~I~~v~~~~~v~vla~~~g 152 (188)
T PF01174_consen 81 LAKEVEGQ----GQPLLGLLDITVRRNAFGRQLDSFEADLDIPGLGEP----FPAVFIRAPVIEEVGSPEGVEVLAELDG 152 (188)
T ss_dssp HEEEECSS----CCTSS--EEEEEETTTTCSSSCEEEEEEEETTTESE----EEEEESS--EEEEE--TTTEEEEEEETT
T ss_pred hhhhhhhc----ccccccceeEEEEccccccchhcEEEEEEeecCCCc----EEEEEcCCcEEEEeeccccccccccccc
Confidence 98743222 2222232221 1111 1111 1222222 7888888777776322367777776654
Q ss_pred CCCccccccCCCCCCCcccccchhhhhhcccccccccCCCcccccccccCCcceEEEEEecCCCEEEEeccCCCCCCchh
Q 046651 167 ADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGIMHSTRPHYGVQFHPESIATCYG 246 (392)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vmgi~h~~~P~~GVQFHPEsiat~~G 246 (392)
.+-+++ ..++.++-||||- |.+|
T Consensus 153 -----------------------------------------------------~iVav~--qgn~latsFHPEL--T~D~ 175 (188)
T PF01174_consen 153 -----------------------------------------------------KIVAVR--QGNILATSFHPEL--TDDD 175 (188)
T ss_dssp -----------------------------------------------------EEEEEE--ETTEEEESS-GGG--SSTH
T ss_pred -----------------------------------------------------ceEEEE--ecCEEEEEeCCcc--cCch
Confidence 333454 5689999999997 7677
Q ss_pred HHHHHHHHHHH
Q 046651 247 SKILRNFREIT 257 (392)
Q Consensus 247 ~~I~~NF~~l~ 257 (392)
.++.+.|++++
T Consensus 176 ~r~H~yFl~~v 186 (188)
T PF01174_consen 176 TRIHEYFLEMV 186 (188)
T ss_dssp CHHHHHHHHHH
T ss_pred hHHHHHHHHHh
Confidence 89999999876
|
The regulation of cellular growth and proliferation in response to environmental cues is critical for development and the maintenance of viability in all organisms. In unicellular organisms, such as the budding yeast Saccharomyces cerevisiae (Baker's yeast), growth and proliferation are regulated by nutrient availability. Pyridoxal 5'-phosphate (PLP) is synthesized by the PdxA/PdxJ pathway in some species (mostly within the gamma subdivision of the proteobacteria) and by the Pdx1/Pdx2 pathway in most other organisms. This family describes PdxT, the glutaminase subunit of the PLP synthase. It is involved in the hydrolysis of glutamine to glutamate and ammonia, channeling an ammonia molecule to PdxS. ; PDB: 2ISS_D 4ADS_J 2ABW_B 2YWD_A 2NV0_A 2NV2_N 1R9G_A 1Q7R_A 2YWJ_A. |
| >TIGR01735 FGAM_synt phosphoribosylformylglycinamidine synthase, single chain form | Back alignment and domain information |
|---|
Probab=98.50 E-value=3.6e-06 Score=97.55 Aligned_cols=208 Identities=15% Similarity=0.154 Sum_probs=114.3
Q ss_pred CccEEEEEECCCCc-hHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCC-chhHH----
Q 046651 3 EFVRTLLIDNYDSY-TYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPE-DIGIC---- 76 (392)
Q Consensus 3 ~~~r~LlIDnyDSy-T~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~-d~gi~---- 76 (392)
..+|++|+-...++ .+.++.++.. .|++++.|...+..-.+.. | .+|++|||.||..-=+... -.++.
T Consensus 1054 ~~p~vail~~pG~N~~~e~~~Af~~-aGf~~~~v~~~dl~~~~~~--l---~~~~~lv~~GGFSygD~lgsg~~~a~~i~ 1127 (1310)
T TIGR01735 1054 VRPKVAILREQGVNGDREMAAAFDR-AGFEAWDVHMSDLLAGRVH--L---DEFRGLAACGGFSYGDVLGAGKGWAKSIL 1127 (1310)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHH-hCCCcEEEEEeccccCCcc--h---hheeEEEEcCCCCCccchhHHHHHHHHHH
Confidence 35899999988887 4678888986 7998888876553222211 1 5699999988753222111 11111
Q ss_pred -----HHHHHH---cCCCCEEEEcHHHHHHHHHhC----Ce----eee-cCCCceeceeE--EEecCCcccccCCCCCCc
Q 046651 77 -----LRVLLE---CWDVPILGVCLGHQALGFVHG----AD----IVH-APEPVHGRLSE--IVHNGDRLFHDIPSGQNS 137 (392)
Q Consensus 77 -----~~ll~~---~~~iPILGVCLGhQ~La~a~G----g~----V~~-apep~hG~~s~--i~h~g~~LF~~ips~~~s 137 (392)
.+-+.+ ..+.++||||.|+|+|....| +. ..+ ...-+..+... |..+.+.+|+++. + +
T Consensus 1128 ~~~~~~~~~~~f~~~~d~~~LGiCNGfQ~L~~~~gllp~~~~~p~l~~N~s~~fe~r~~~~~v~~s~s~~~~~~~-g--~ 1204 (1310)
T TIGR01735 1128 FNPRLRDQFQAFFKRPDTFSLGVCNGCQMLSNLLEWIPGTENWPHFVRNNSERFEARVASVRVGESPSIMLRGMA-G--S 1204 (1310)
T ss_pred hChHHHHHHHHHHhCCCceEEEecHHHHHHHHHhCcCCCCCCCceeeecCCCCeEEeeeEEEECCCCChhhhhcC-C--C
Confidence 122222 358999999999999994433 11 111 11122222222 3345677777764 3 2
Q ss_pred ceEEEeeecc---ee-ecCC---C-CCCcEEEEEecCCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCccc
Q 046651 138 GFKVVRYHSL---II-DADS---L-PKELIPIAWSNSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRH 209 (392)
Q Consensus 138 ~f~VvryHSl---~V-~~~s---L-P~~l~~iAwt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 209 (392)
.+.+.--|.. .+ +++. | -.+.+.+-+.+.. + ......-.||+++..
T Consensus 1205 ~l~~~vaHgEGr~~~~~~~~~~~l~~~~~ia~~Y~d~~-------------g------~~~~~yp~NPNGS~~------- 1258 (1310)
T TIGR01735 1205 RLPVAVAHGEGYAAFSSPELQAQADASGLAALRYIDDD-------------G------NPTEAYPLNPNGSPG------- 1258 (1310)
T ss_pred EEEEEeEcCCCCeeeCCHHHHHHHHhCCeEEEEEeCCC-------------C------CccCCCCCCCCCChh-------
Confidence 2555555533 11 1110 1 1234444443321 1 000011123332222
Q ss_pred ccccccCCcceEEEEEecCCCEEEEeccCCCCC---------C-----chhHHHHHHHHH
Q 046651 210 SIYSNRMRREVLMGIMHSTRPHYGVQFHPESIA---------T-----CYGSKILRNFRE 255 (392)
Q Consensus 210 ~~~~~~~~~~~vmgi~h~~~P~~GVQFHPEsia---------t-----~~G~~I~~NF~~ 255 (392)
-|.||...+..|+|++.|||+.. . ..+.+||+|-++
T Consensus 1259 ----------~IaGi~s~dGrvl~~MpHPEr~~~~~q~~~~p~~~~~~~pw~~~F~na~~ 1308 (1310)
T TIGR01735 1259 ----------GIAGITSCDGRVTIMMPHPERVFRAWQNSWRPEDWDEDTPWLRLFRNARN 1308 (1310)
T ss_pred ----------cceEeECCCCCEEEEcCCHHHhhhHhhCCcCCCCCCCCCcHHHHHHHHHH
Confidence 69999999999999999999952 1 135677777654
|
This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This form is found mostly in eukaryotes and Proteobacteria. In Bacillus subtilis PurL (FGAM synthase II) and PurQ (FGAM synthase I), homologous to different parts of this model, perform the equivalent function; the unrelated small protein PurS is also required and may be a third subunit. |
| >PRK05297 phosphoribosylformylglycinamidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.45 E-value=5.4e-06 Score=96.16 Aligned_cols=93 Identities=15% Similarity=0.142 Sum_probs=61.3
Q ss_pred CccEEEEEECCCCc-hHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCc-hhH-----
Q 046651 3 EFVRTLLIDNYDSY-TYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPED-IGI----- 75 (392)
Q Consensus 3 ~~~r~LlIDnyDSy-T~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d-~gi----- 75 (392)
..+|++|+-...++ .+.++.++.. .|++++.|...+..-... .| .+|++|||.||..-=+.... .++
T Consensus 1034 ~~pkv~il~~pG~N~~~e~~~Af~~-aG~~~~~v~~~dl~~~~~--~l---~~~~~l~~~GGFS~gD~lgsg~~~a~~~~ 1107 (1290)
T PRK05297 1034 ARPKVAILREQGVNSHVEMAAAFDR-AGFDAIDVHMSDLLAGRV--TL---EDFKGLVACGGFSYGDVLGAGEGWAKSIL 1107 (1290)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH-cCCCeEEEEeecCcCCCC--Ch---hhCcEEEECCccCCcccchHHHHHHHHhh
Confidence 35899999998887 4778899986 799887776544321111 12 56999999877533222110 111
Q ss_pred ----HHHHHHH---cCCCCEEEEcHHHHHHHHH
Q 046651 76 ----CLRVLLE---CWDVPILGVCLGHQALGFV 101 (392)
Q Consensus 76 ----~~~ll~~---~~~iPILGVCLGhQ~La~a 101 (392)
+.+-+.+ ..+.++||||.|+|+|...
T Consensus 1108 ~n~~~~~~~~~f~~~~d~~~LGiCNGfQ~L~~l 1140 (1290)
T PRK05297 1108 FNPRLRDQFEAFFARPDTFALGVCNGCQMMSNL 1140 (1290)
T ss_pred ccHHHHHHHHHHHhCCCceEEEEcHHHHHHHHh
Confidence 1122222 3599999999999999997
|
|
| >PF04204 HTS: Homoserine O-succinyltransferase ; InterPro: IPR005697 This family of enzymes, homoserine O-succinyltransferase, catalyses the first step in the biosynthesis of methionine: |
Back alignment and domain information |
|---|
Probab=98.39 E-value=2.5e-06 Score=84.67 Aligned_cols=110 Identities=21% Similarity=0.214 Sum_probs=65.4
Q ss_pred CCcCEEEECCCCCCCCCCCc---hhHHHHHHHH--cCCCCEEEEcHHHHH-HHHHhCCeeeecCCCceeceeEE-EecCC
Q 046651 53 NAFDNIVISPGPGSPACPED---IGICLRVLLE--CWDVPILGVCLGHQA-LGFVHGADIVHAPEPVHGRLSEI-VHNGD 125 (392)
Q Consensus 53 ~~fDgIVISpGPGsp~~~~d---~gi~~~ll~~--~~~iPILGVCLGhQ~-La~a~Gg~V~~apep~hG~~s~i-~h~g~ 125 (392)
..|||+||+|-|=.--.-++ +.-+.+++.. ..-.+.|.||+|.|+ |.+.+|-.-...++...|...-- ....+
T Consensus 97 ~~~DglIITGAPvE~l~Fe~V~YW~El~~i~dwa~~~v~stl~iCWgAqAaLy~~yGI~K~~l~~KlfGVf~~~~~~~~~ 176 (298)
T PF04204_consen 97 RKFDGLIITGAPVEQLPFEEVDYWDELTEIFDWAKTHVTSTLFICWGAQAALYHFYGIPKYPLPEKLFGVFEHRVLDPDH 176 (298)
T ss_dssp S-EEEEEE---TTTTS-GGGSTTHHHHHHHHHHHHHHEEEEEEETHHHHHHHHHHH----EEEEEEEEEEEEEEES-SS-
T ss_pred CCCCEEEEeCCCcCCCCcccCCcHHHHHHHHHHHHHcCCcchhhhHHHHHHHHHHcCCCcccCCCcceeceeeeccCCCC
Confidence 78999999977754333222 2333344443 237899999999998 88888999999998888865442 34578
Q ss_pred cccccCCCCCCcceEEEeeecceeecCCC--CCCcEEEEEecC
Q 046651 126 RLFHDIPSGQNSGFKVVRYHSLIIDADSL--PKELIPIAWSNS 166 (392)
Q Consensus 126 ~LF~~ips~~~s~f~VvryHSl~V~~~sL--P~~l~~iAwt~~ 166 (392)
+|++|++.. |.+-..-.-.|+.+.+ .++|.++|+++.
T Consensus 177 pLl~Gfdd~----f~~PhSR~t~i~~~~i~~~~~L~vLa~s~~ 215 (298)
T PF04204_consen 177 PLLRGFDDT----FFAPHSRYTEIDRDDIKKAPGLEVLAESEE 215 (298)
T ss_dssp GGGTT--SE----EEEEEEEEEE--HHHHCT-TTEEEEEEETT
T ss_pred hhhcCCCcc----ccCCcccccCCCHHHHhcCCCcEEEeccCC
Confidence 999999877 8775332223333324 568999999987
|
Since they are not found in humans, they make a promising new target for antimicrobial drug development. Homoserine O-succinyltransferase (HST) is a representative from this class and has recently had the key amino acids involved in substrate specificity and catalysis elucidated [].; GO: 0016746 transferase activity, transferring acyl groups, 0019281 L-methionine biosynthetic process from homoserine via O-succinyl-L-homoserine and cystathionine, 0005737 cytoplasm; PDB: 2H2W_A 2GHR_A 2VDJ_A. |
| >cd01750 GATase1_CobQ Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ) | Back alignment and domain information |
|---|
Probab=98.20 E-value=2.5e-06 Score=79.24 Aligned_cols=82 Identities=21% Similarity=0.134 Sum_probs=54.3
Q ss_pred EEEEECC-CCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCC-C-C--chhHHHHHHH
Q 046651 7 TLLIDNY-DSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPAC-P-E--DIGICLRVLL 81 (392)
Q Consensus 7 ~LlIDny-DSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~-~-~--d~gi~~~ll~ 81 (392)
++||+.. -++...+.+++.. .|+++++++..+. + ..+|+|||.||. +... . . ..+ ..+.|+
T Consensus 1 ~~~~~y~~~gN~~~l~~~~~~-~G~~~~~~~~~~~----~-------~~~d~lilpGg~-~~~~~~~~~~~~~-~~~~i~ 66 (194)
T cd01750 1 IAVIRYPDISNFTDLDPLARE-PGVDVRYVEVPEG----L-------GDADLIILPGSK-DTIQDLAWLRKRG-LAEAIK 66 (194)
T ss_pred CEeecCCCccCHHHHHHHHhc-CCceEEEEeCCCC----C-------CCCCEEEECCCc-chHHHHHHHHHcC-HHHHHH
Confidence 4677775 3556667777766 7999999876552 2 468999996555 3321 0 0 111 223333
Q ss_pred H--cCCCCEEEEcHHHHHHHHHh
Q 046651 82 E--CWDVPILGVCLGHQALGFVH 102 (392)
Q Consensus 82 ~--~~~iPILGVCLGhQ~La~a~ 102 (392)
+ ..++||||||.|+|+|+...
T Consensus 67 ~~~~~g~pvlgiC~G~qlL~~~~ 89 (194)
T cd01750 67 NYARAGGPVLGICGGYQMLGKYI 89 (194)
T ss_pred HHHHCCCcEEEECHHHHHhhhhc
Confidence 3 24999999999999999986
|
Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ). CobQ plays a role in cobalamin biosythesis. CobQ catalyses amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide in the biosynthesis of cobalamin. CobQ belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobQ. |
| >PHA03366 FGAM-synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.13 E-value=4.6e-05 Score=88.59 Aligned_cols=92 Identities=20% Similarity=0.149 Sum_probs=63.2
Q ss_pred CccEEEEEECCCCc-hHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCC-chhH-----
Q 046651 3 EFVRTLLIDNYDSY-TYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPE-DIGI----- 75 (392)
Q Consensus 3 ~~~r~LlIDnyDSy-T~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~-d~gi----- 75 (392)
.++|++|+-...++ .+.++.++.. .|++++.|...+..-..+ | .+|++|||.||.+.-+... ..++
T Consensus 1027 ~~prVaIl~~pG~N~~~e~~~Af~~-aGf~~~~v~~~dL~~~~~---l---~~f~glv~~GGFS~gD~l~~~~~~a~~il 1099 (1304)
T PHA03366 1027 KRHRVAVLLLPGCPGPHALLAAFTN-AGFDPYPVSIEELKDGTF---L---DEFSGLVIGGSSGAEDSYTGARAAVAALL 1099 (1304)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH-cCCceEEEEeecCCCCCc---c---ccceEEEEcCCCCCcccccHHHHHHHHhh
Confidence 35899999988877 4778999987 799988887655422232 2 6799999987775433221 1121
Q ss_pred ----HHHHHHH---cCCCCEEEEcH-HHHHHHHH
Q 046651 76 ----CLRVLLE---CWDVPILGVCL-GHQALGFV 101 (392)
Q Consensus 76 ----~~~ll~~---~~~iPILGVCL-GhQ~La~a 101 (392)
+.+.+.+ ..|.++||||. |+|+|...
T Consensus 1100 ~n~~~~~~~~~f~~r~dt~~LGiCN~G~Q~L~~l 1133 (1304)
T PHA03366 1100 SNPAVRDALLRFLNRPDTFSLGCGELGCQILFAL 1133 (1304)
T ss_pred hchHHHHHHHHHHhCCCCeEEEeCcHHHHHHHHc
Confidence 1122222 35999999998 99999986
|
|
| >TIGR01001 metA homoserine O-succinyltransferase | Back alignment and domain information |
|---|
Probab=98.03 E-value=2.8e-05 Score=77.06 Aligned_cols=109 Identities=20% Similarity=0.209 Sum_probs=74.0
Q ss_pred CCcCEEEECCCCCCCCCCCc---hhHHHHHHHH--cCCCCEEEEcHHHHH-HHHHhCCeeeecCCCceeceeE-EEecCC
Q 046651 53 NAFDNIVISPGPGSPACPED---IGICLRVLLE--CWDVPILGVCLGHQA-LGFVHGADIVHAPEPVHGRLSE-IVHNGD 125 (392)
Q Consensus 53 ~~fDgIVISpGPGsp~~~~d---~gi~~~ll~~--~~~iPILGVCLGhQ~-La~a~Gg~V~~apep~hG~~s~-i~h~g~ 125 (392)
..|||+||+|-|=.--.-++ +.-+.+++.. ..-..+|.||+|.|+ |-+..|-.-...++...|...- +. ..+
T Consensus 98 ~~fDGlIITGAPvE~l~FeeV~YW~El~~I~dwsk~~v~Stl~iCWaAqAaLy~~yGI~K~~l~~KlfGVf~h~~~-~~~ 176 (300)
T TIGR01001 98 RKFDGLIITGAPVELVPFEDVAYWEELTEIMEWSKHNVTSTMFICWAAQAGLKYFYGIPKYTLPEKLSGVYKHDIA-PDS 176 (300)
T ss_pred CCCCEEEEcCCCcCCCCcccCCcHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHcCCCccccCCceEEeecCccC-CCC
Confidence 78999999987754322222 3334444443 237899999999998 6667798888899888885442 33 678
Q ss_pred cccccCCCCCCcceEEEeeecceeecCCC--CCCcEEEEEecC
Q 046651 126 RLFHDIPSGQNSGFKVVRYHSLIIDADSL--PKELIPIAWSNS 166 (392)
Q Consensus 126 ~LF~~ips~~~s~f~VvryHSl~V~~~sL--P~~l~~iAwt~~ 166 (392)
+|+.|+... |.+-....-.|+.+.+ .++|.++|.++.
T Consensus 177 pL~rGfdd~----f~~PhSR~t~i~~~~i~~~~~L~vla~s~e 215 (300)
T TIGR01001 177 LLLRGFDDF----FLAPHSRYADFDAEDIDKVTDLEILAESDE 215 (300)
T ss_pred ccccCCCCc----cccCCCCCCCCCHHHHhcCCCCeEEecCCC
Confidence 999999877 7764221112443323 358999998876
|
The apparent equivalog from Bacillus subtilis is broken into two tandem reading frames. |
| >PRK06278 cobyrinic acid a,c-diamide synthase; Validated | Back alignment and domain information |
|---|
Probab=97.81 E-value=6.5e-05 Score=79.18 Aligned_cols=81 Identities=20% Similarity=0.340 Sum_probs=49.5
Q ss_pred cEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCch-hHHHHHHHHc
Q 046651 5 VRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDI-GICLRVLLEC 83 (392)
Q Consensus 5 ~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~-gi~~~ll~~~ 83 (392)
|||.|+.- .++++++......++.++..+. .+++ ..+|.|||.| |.-....++ .-..+.+++.
T Consensus 1 m~iGvlal-----~sv~~al~~lg~~~~~vv~~~~--~~~l-------~~~D~lILPG--G~~~~~~~l~~~l~~~i~~~ 64 (476)
T PRK06278 1 MEIGLLDI-----KGSLPCFENFGNLPTKIIDENN--IKEI-------KDLDGLIIPG--GSLVESGSLTDELKKEILNF 64 (476)
T ss_pred CEEEEEeh-----hhHHHHHHHhcCCCcEEEEeCC--hHHh-------ccCCEEEECC--CchhhcchHHHHHHHHHHHc
Confidence 67888874 3555677664333666655444 3555 4599999943 321111221 1123444445
Q ss_pred CCCCEEEEcHHHHHHHHHh
Q 046651 84 WDVPILGVCLGHQALGFVH 102 (392)
Q Consensus 84 ~~iPILGVCLGhQ~La~a~ 102 (392)
+.||||||.|+|+|+...
T Consensus 65 -g~pvlGICgG~QmLg~~~ 82 (476)
T PRK06278 65 -DGYIIGICSGFQILSEKI 82 (476)
T ss_pred -CCeEEEEcHHHHhccccc
Confidence 899999999999999864
|
|
| >cd03130 GATase1_CobB Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase | Back alignment and domain information |
|---|
Probab=97.76 E-value=4.8e-05 Score=70.97 Aligned_cols=72 Identities=18% Similarity=0.170 Sum_probs=44.7
Q ss_pred HHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCC-CCch---hHHHHHHHH--cCCCCEEEEc
Q 046651 19 NIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPAC-PEDI---GICLRVLLE--CWDVPILGVC 92 (392)
Q Consensus 19 nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~-~~d~---gi~~~ll~~--~~~iPILGVC 92 (392)
.-++.|++ .|++++++..-.. +++ ..+|+|||.| |.+.. ...+ .-..+.|++ ..++||+|||
T Consensus 15 e~~~~l~~-~G~~v~~~s~~~~--~~l-------~~~D~lilPG--G~~~~~~~~L~~~~~~~~~i~~~~~~g~pilgIC 82 (198)
T cd03130 15 ENLELLEA-AGAELVPFSPLKD--EEL-------PDADGLYLGG--GYPELFAEELSANQSMRESIRAFAESGGPIYAEC 82 (198)
T ss_pred HHHHHHHH-CCCEEEEECCCCC--CCC-------CCCCEEEECC--CchHHHHHHHHhhHHHHHHHHHHHHcCCCEEEEc
Confidence 34566776 7999988765211 122 3489999944 33331 1111 112344444 2489999999
Q ss_pred HHHHHHHHHh
Q 046651 93 LGHQALGFVH 102 (392)
Q Consensus 93 LGhQ~La~a~ 102 (392)
.|+|+|+...
T Consensus 83 gG~qlL~~~~ 92 (198)
T cd03130 83 GGLMYLGESL 92 (198)
T ss_pred ccHHHHHHHh
Confidence 9999999974
|
Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. CobB plays a role in cobalamin biosythesis catalyzing the conversion of cobyrinic acid to cobyrinic acid a,c-diamide. CobB belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobB. |
| >TIGR01739 tegu_FGAM_synt herpesvirus tegument protein/v-FGAM-synthase | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00062 Score=78.99 Aligned_cols=91 Identities=22% Similarity=0.228 Sum_probs=60.4
Q ss_pred ccEEEEEECCCCc-hHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCC-CchhHH-----
Q 046651 4 FVRTLLIDNYDSY-TYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACP-EDIGIC----- 76 (392)
Q Consensus 4 ~~r~LlIDnyDSy-T~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~-~d~gi~----- 76 (392)
+.||+|+-...++ .+.++.++.. .|++++.|...+..-.+. | .+|++|||.||.+--+.. +..++.
T Consensus 929 ~p~VaIl~~pG~N~~~e~~~Af~~-aGf~~~~v~~~dl~~~~~---l---~~f~glv~~Ggfsy~D~lgsg~~~a~~il~ 1001 (1202)
T TIGR01739 929 RHQVAVLLLPGQSVPHGLLAALTN-AGFDPRIVSITELKKTDF---L---DTFSGLIIGGASGTLDSEVGARALAAALLR 1001 (1202)
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHH-cCCceEEEEeccCCCCCc---h---hheEEEEEcCcCCCCccchHHHHHHHHhhc
Confidence 4689999888776 5778999987 799988887655422221 1 469999997666432211 111111
Q ss_pred ----HHHHHH---cCCCCEEEEcH-HHHHHHHH
Q 046651 77 ----LRVLLE---CWDVPILGVCL-GHQALGFV 101 (392)
Q Consensus 77 ----~~ll~~---~~~iPILGVCL-GhQ~La~a 101 (392)
.+-+.+ ..+.++||||. |+|+|...
T Consensus 1002 n~~~~~~~~~f~~r~dtf~LGiCN~G~Q~L~~l 1034 (1202)
T TIGR01739 1002 NQAFLRDLLTFLNRPDTFSLGFGELGCQLLLAL 1034 (1202)
T ss_pred chHHHHHHHHHHhCCCceEEEeCcHHHHHHHHc
Confidence 122222 34999999997 99999986
|
This model describes a family of large proteins of herpesvirues. The protein is described variably as tegument protein or phosphoribosylformylglycinamidine synthase (FGAM-synthase). Most of the length of the protein shows homology to eukaryotic FGAM-synthase. Functional characterizations were not verified during construction of this model. |
| >cd01653 GATase1 Type 1 glutamine amidotransferase (GATase1)-like domain | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00024 Score=55.57 Aligned_cols=85 Identities=26% Similarity=0.334 Sum_probs=53.7
Q ss_pred EEECCCCch---HHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHHc--
Q 046651 9 LIDNYDSYT---YNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLEC-- 83 (392)
Q Consensus 9 lIDnyDSyT---~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~~-- 83 (392)
++...++.. ..+++.+.. .+.++.++......... . .+...||+|||++|+..+..........+.++++
T Consensus 3 i~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~-~---~~~~~~d~lii~g~~~~~~~~~~~~~~~~~i~~~~~ 77 (115)
T cd01653 3 VLLFPGFEELELASPLDALRE-AGAEVDVVSPDGGPVES-D---VDLDDYDGLILPGGPGTPDDLARDEALLALLREAAA 77 (115)
T ss_pred EEecCCCchhhhHHHHHHHHH-CCCeEEEEcCCCCceec-c---CChhccCEEEECCCCCchhhhccCHHHHHHHHHHHH
Confidence 444434443 567888877 68888888776642110 0 0115699999987776655432112234444442
Q ss_pred CCCCEEEEcHHHHHH
Q 046651 84 WDVPILGVCLGHQAL 98 (392)
Q Consensus 84 ~~iPILGVCLGhQ~L 98 (392)
.+.|++|+|.|+|++
T Consensus 78 ~~~~i~~~c~g~~~l 92 (115)
T cd01653 78 AGKPILGICLGAQLL 92 (115)
T ss_pred cCCEEEEECchhHhH
Confidence 378999999999999
|
Type 1 glutamine amidotransferase (GATase1)-like domain. This group includes proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA. and, the A4 beta-galactosidase middle domain. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamine-depende |
| >cd03128 GAT_1 Type 1 glutamine amidotransferase (GATase1)-like domain | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00024 Score=53.04 Aligned_cols=76 Identities=28% Similarity=0.393 Sum_probs=49.4
Q ss_pred HHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHH--cCCCCEEEEcHHH
Q 046651 18 YNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLE--CWDVPILGVCLGH 95 (392)
Q Consensus 18 ~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~--~~~iPILGVCLGh 95 (392)
.++++.+.+ .+..+.++......... ......+|.||+++|+..+..........+.+.+ ..+.|++|+|.|.
T Consensus 15 ~~~~~~~~~-~~~~~~~~~~~~~~~~~----~~~~~~~~~lii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 89 (92)
T cd03128 15 ASPLDALRE-AGAEVDVVSPDGGPVES----DVDLDDYDGLILPGGPGTPDDLAWDEALLALLREAAAAGKPVLGICLGA 89 (92)
T ss_pred ecHHHHHHh-CCCEEEEEeCCCCcccc----cCCcccCCEEEECCCCcchhhhccCHHHHHHHHHHHHcCCEEEEEeccc
Confidence 577888887 57888888776652211 0112679999998887776554212223344433 2379999999999
Q ss_pred HHH
Q 046651 96 QAL 98 (392)
Q Consensus 96 Q~L 98 (392)
|++
T Consensus 90 ~~~ 92 (92)
T cd03128 90 QLL 92 (92)
T ss_pred ccC
Confidence 864
|
Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA, the A4 beta-galactosidase middle domain and peptidase E. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamin |
| >PRK00784 cobyric acid synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.00042 Score=73.15 Aligned_cols=87 Identities=22% Similarity=0.242 Sum_probs=52.8
Q ss_pred ccEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCC---chhHHHHHH
Q 046651 4 FVRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPE---DIGICLRVL 80 (392)
Q Consensus 4 ~~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~---d~gi~~~ll 80 (392)
.+||.|+..--.+.+.=++.|.+..|++++++...+ ++ ..+|+|||.||.-.-.+.+ ..++ .+.|
T Consensus 251 ~~~i~v~~~~~a~~f~nl~~l~~~~g~~v~~~s~~~----~l-------~~~d~lilpGg~~~~~~~~~~~~~~l-~~~i 318 (488)
T PRK00784 251 ALRIAVIRLPRISNFTDFDPLRAEPGVDVRYVRPGE----PL-------PDADLVILPGSKNTIADLAWLRESGW-DEAI 318 (488)
T ss_pred ceEEEEEeCCCcCCccChHHHhhcCCCeEEEECCcc----cc-------ccCCEEEECCccchHHHHHHHHHcCH-HHHH
Confidence 368888873223333334556554799988886532 33 4589999965542211111 1122 2333
Q ss_pred HH--cCCCCEEEEcHHHHHHHHHh
Q 046651 81 LE--CWDVPILGVCLGHQALGFVH 102 (392)
Q Consensus 81 ~~--~~~iPILGVCLGhQ~La~a~ 102 (392)
++ ..+.||||||.|+|+|+...
T Consensus 319 ~~~~~~g~pilg~C~G~~~L~~~~ 342 (488)
T PRK00784 319 RAHARRGGPVLGICGGYQMLGRRI 342 (488)
T ss_pred HHHHHcCCeEEEECHHHHHHhhhc
Confidence 33 24899999999999999975
|
|
| >cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.00067 Score=63.85 Aligned_cols=89 Identities=19% Similarity=0.140 Sum_probs=55.6
Q ss_pred ccEEEEEECC----CCchHHHHHHHHHhC-CCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCC----Cchh
Q 046651 4 FVRTLLIDNY----DSYTYNIYQELSTIN-GVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACP----EDIG 74 (392)
Q Consensus 4 ~~r~LlIDny----DSyT~nl~q~L~~v~-G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~----~d~g 74 (392)
..|+++|-.- +.|..++.+.+.. + |++++++.--+ -+++...| ..+|.|+++| |+.... .+.+
T Consensus 31 ~~~i~~IptAs~~~~~~~~~~~~a~~~-l~G~~~~~~~~~~--~~~~~~~l---~~ad~I~l~G--G~~~~~~~~l~~~~ 102 (212)
T cd03146 31 RPKVLFVPTASGDRDEYTARFYAAFES-LRGVEVSHLHLFD--TEDPLDAL---LEADVIYVGG--GNTFNLLAQWREHG 102 (212)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHhh-ccCcEEEEEeccC--cccHHHHH---hcCCEEEECC--chHHHHHHHHHHcC
Confidence 4688888543 4566677788877 7 88887664211 11222223 5699999965 554321 1112
Q ss_pred HHHHHHHH--cCCCCEEEEcHHHHHHHHH
Q 046651 75 ICLRVLLE--CWDVPILGVCLGHQALGFV 101 (392)
Q Consensus 75 i~~~ll~~--~~~iPILGVCLGhQ~La~a 101 (392)
..++|++ .++.|++|+|.|+|+++..
T Consensus 103 -l~~~l~~~~~~g~~i~G~SAGa~i~~~~ 130 (212)
T cd03146 103 -LDAILKAALERGVVYIGWSAGSNCWFPS 130 (212)
T ss_pred -HHHHHHHHHHCCCEEEEECHhHHhhCCC
Confidence 2333443 2589999999999999875
|
Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption. |
| >KOG3210 consensus Imidazoleglycerol-phosphate synthase subunit H-like [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.0031 Score=58.18 Aligned_cols=65 Identities=18% Similarity=0.239 Sum_probs=37.4
Q ss_pred CCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCC-CCc-hhH--HHHHHHHcCCCCEEEEcHHHHHHHHHh
Q 046651 29 GVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPAC-PED-IGI--CLRVLLECWDVPILGVCLGHQALGFVH 102 (392)
Q Consensus 29 G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~-~~d-~gi--~~~ll~~~~~iPILGVCLGhQ~La~a~ 102 (392)
++...|..-. +.+|+. ++|++||.||-.+... ... -++ ++.-+-....+|+||.|-||-.|..-.
T Consensus 40 ~Ik~~~~tVK--T~~D~a-------q~DaLIIPGGEST~mslia~~tgL~d~L~~fVhn~~k~~WGTCAGmI~LS~ql 108 (226)
T KOG3210|consen 40 EIKLSVMTVK--TKNDLA-------QCDALIIPGGESTAMSLIAERTGLYDDLYAFVHNPSKVTWGTCAGMIYLSQQL 108 (226)
T ss_pred eEEEEEEeec--CHHHHh-------hCCEEEecCCchhHHHHHHhhhhhHHHHHHHhcCCCccceeechhhhhhhhhh
Confidence 4444444443 357764 5999999666543221 111 121 111122245699999999999988754
|
|
| >COG1492 CobQ Cobyric acid synthase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.0014 Score=68.98 Aligned_cols=84 Identities=20% Similarity=0.261 Sum_probs=57.2
Q ss_pred ccEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchh------HHH
Q 046651 4 FVRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIG------ICL 77 (392)
Q Consensus 4 ~~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~g------i~~ 77 (392)
.++|+++...--=++.-+..|+..-++.+.+|+.... + ...|.||| ||+-...+|+. +-.
T Consensus 251 ~i~Iav~~lp~isNFtD~dpL~~~~~v~v~~v~~~~~----l-------~~~dlvIl---PGsk~t~~DL~~lr~~g~d~ 316 (486)
T COG1492 251 AIRIAVIRLPRISNFTDFDPLRAEPDVRVRFVKPGSD----L-------RDADLVIL---PGSKNTIADLKILREGGMDE 316 (486)
T ss_pred ceEEEEecCCCccccccchhhhcCCCeEEEEeccCCC----C-------CCCCEEEe---CCCcccHHHHHHHHHcCHHH
Confidence 3677777543222444566676545888888876653 3 45899999 67766656653 344
Q ss_pred HHHHHc-CCCCEEEEcHHHHHHHHH
Q 046651 78 RVLLEC-WDVPILGVCLGHQALGFV 101 (392)
Q Consensus 78 ~ll~~~-~~iPILGVCLGhQ~La~a 101 (392)
++++.. .+.||+|||-|+|||+..
T Consensus 317 ~i~~~~~~~~~viGICGG~QmLG~~ 341 (486)
T COG1492 317 KILEYARKGGDVIGICGGYQMLGRR 341 (486)
T ss_pred HHHHHHhCCCCEEEEcchHHhhhhh
Confidence 555553 389999999999999986
|
|
| >PRK11780 isoprenoid biosynthesis protein with amidotransferase-like domain; Provisional | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.0098 Score=56.68 Aligned_cols=50 Identities=16% Similarity=0.199 Sum_probs=35.4
Q ss_pred CCcCEEEECCCCCCCCCCCc----------hhHHHHHHHH--cCCCCEEEEcHHHHHHHHHh
Q 046651 53 NAFDNIVISPGPGSPACPED----------IGICLRVLLE--CWDVPILGVCLGHQALGFVH 102 (392)
Q Consensus 53 ~~fDgIVISpGPGsp~~~~d----------~gi~~~ll~~--~~~iPILGVCLGhQ~La~a~ 102 (392)
.+||+|||.||-|.+....| -....+++++ ..++||..||-|-++|+.+.
T Consensus 84 ~dyDalviPGG~g~~~~l~d~~~~~~~lr~~~~v~~lv~~f~~~gK~vaAIChgp~iL~~~~ 145 (217)
T PRK11780 84 EDFDALIVPGGFGAAKNLSNFAVKGAECTVNPDVKALVRAFHQAGKPIGFICIAPAMLPKIL 145 (217)
T ss_pred hhCCEEEECCCCchhhhhhhhcccchhcccCHHHHHHHHHHHHCCCEEEEECHHHHHHHHHh
Confidence 57999999888665322111 2234556655 35899999999999998875
|
|
| >PRK01077 cobyrinic acid a,c-diamide synthase; Validated | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.0033 Score=65.73 Aligned_cols=87 Identities=16% Similarity=0.150 Sum_probs=52.2
Q ss_pred cEEEEEECCC-CchHH-HHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCC---CCchhHHHHH
Q 046651 5 VRTLLIDNYD-SYTYN-IYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPAC---PEDIGICLRV 79 (392)
Q Consensus 5 ~r~LlIDnyD-SyT~n-l~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~---~~d~gi~~~l 79 (392)
+||.|+-..- +|+|. =++.|++ .|++++.++.-.. +++ ..+|+|||.||...-.. ....+ ..+.
T Consensus 246 ~~iava~d~af~f~y~e~~~~L~~-~g~~~~~~~~~~~--~~l-------~~~D~lilpGG~~~~~~~~l~~~~~-~~~~ 314 (451)
T PRK01077 246 VRIAVARDAAFNFYYPENLELLRA-AGAELVFFSPLAD--EAL-------PDCDGLYLGGGYPELFAAELAANTS-MRAS 314 (451)
T ss_pred ceEEEEecCcccccHHHHHHHHHH-CCCEEEEeCCcCC--CCC-------CCCCEEEeCCCchhhHHHHHhhCch-hHHH
Confidence 5787775432 22221 3466765 7988887764211 122 45899999766422111 11222 2344
Q ss_pred HHH--cCCCCEEEEcHHHHHHHHHh
Q 046651 80 LLE--CWDVPILGVCLGHQALGFVH 102 (392)
Q Consensus 80 l~~--~~~iPILGVCLGhQ~La~a~ 102 (392)
|++ ..+.||+|||-|+|+|+...
T Consensus 315 i~~~~~~g~~i~aiCgG~~~L~~~i 339 (451)
T PRK01077 315 IRAAAAAGKPIYAECGGLMYLGESL 339 (451)
T ss_pred HHHHHHcCCCEEEEcHHHHHHHhhh
Confidence 444 35889999999999999985
|
|
| >cd03169 GATase1_PfpI_1 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.0047 Score=56.06 Aligned_cols=47 Identities=23% Similarity=0.367 Sum_probs=33.6
Q ss_pred CcCEEEECCCCCCCCCCCchhHHHHHHHH--cCCCCEEEEcHHHHHHHHH
Q 046651 54 AFDNIVISPGPGSPACPEDIGICLRVLLE--CWDVPILGVCLGHQALGFV 101 (392)
Q Consensus 54 ~fDgIVISpGPGsp~~~~d~gi~~~ll~~--~~~iPILGVCLGhQ~La~a 101 (392)
.||.|||.||++......+ ....++|++ ..++||.|||.|.++|+.+
T Consensus 76 ~~D~liv~GG~~~~~~~~~-~~~~~~l~~~~~~~k~i~~ic~G~~~La~a 124 (180)
T cd03169 76 DYDALVIPGGRAPEYLRLD-EKVLAIVRHFAEANKPVAAICHGPQILAAA 124 (180)
T ss_pred HCCEEEEcCCCChhhhccC-HHHHHHHHHHHHcCCEEEEECcHHHHHHHc
Confidence 6899999888753221122 234566655 3589999999999999986
|
Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. |
| >TIGR01382 PfpI intracellular protease, PfpI family | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.0069 Score=53.79 Aligned_cols=47 Identities=26% Similarity=0.369 Sum_probs=33.2
Q ss_pred CcCEEEECCCCCCCCCCCchhHHHHHHHH--cCCCCEEEEcHHHHHHHHH
Q 046651 54 AFDNIVISPGPGSPACPEDIGICLRVLLE--CWDVPILGVCLGHQALGFV 101 (392)
Q Consensus 54 ~fDgIVISpGPGsp~~~~d~gi~~~ll~~--~~~iPILGVCLGhQ~La~a 101 (392)
.||.|||.||++ +.....-....++|++ ..++||.|||-|.++|+.+
T Consensus 60 ~~D~vvv~Gg~~-~~~~~~~~~l~~~l~~~~~~~~~i~~ic~G~~~La~a 108 (166)
T TIGR01382 60 EYDALVIPGGRA-PEYLRLNNKAVRLVREFVEKGKPVAAICHGPQLLISA 108 (166)
T ss_pred HCcEEEECCCCC-HHHhccCHHHHHHHHHHHHcCCEEEEEChHHHHHHhc
Confidence 599999988876 3221121234555655 3589999999999999985
|
The member of this family from Pyrococcus horikoshii has been solved to 2 Angstrom resolution. It is an ATP-independent intracellular protease that crystallizes as a hexameric ring. Cys-101 is proposed as the active site residue in a catalytic triad with the adjacent His-102 and a Glu residue from an adjacent monomer. A member of this family from Bacillus subtilis, GSP18, has been shown to be expressed in response to several forms of stress. A role in the degradation of small peptides has been suggested. A closely related family consists of the thiamine biosynthesis protein ThiJ and its homologs. |
| >cd03133 GATase1_ES1 Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1 | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.011 Score=56.23 Aligned_cols=51 Identities=22% Similarity=0.307 Sum_probs=35.8
Q ss_pred CCcCEEEECCCCCCCCCCCc----------hhHHHHHHHH--cCCCCEEEEcHHHHHHHHHhC
Q 046651 53 NAFDNIVISPGPGSPACPED----------IGICLRVLLE--CWDVPILGVCLGHQALGFVHG 103 (392)
Q Consensus 53 ~~fDgIVISpGPGsp~~~~d----------~gi~~~ll~~--~~~iPILGVCLGhQ~La~a~G 103 (392)
.+||+|||.||.+.+....| -....+++++ ..++||.+||-|-++|+.+.+
T Consensus 81 ~dyDalviPGG~~~~~~l~D~~~~~~~~~~~~~l~~lv~~f~~~gK~VaAIChgp~~L~~~~~ 143 (213)
T cd03133 81 ADFDALIFPGGFGAAKNLSDFAVKGADCTVNPEVERLVREFHQAGKPIGAICIAPALAAKILG 143 (213)
T ss_pred hHCCEEEECCCCchhhhhhhhcccccccccCHHHHHHHHHHHHCCCeEEEECHHHHHHHHHhc
Confidence 57999999888664322211 2234555555 358999999999999998763
|
Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1. This group includes, proteins similar to ES1, Escherichia coli enhancing lycopene biosynthesis protein 2, Azospirillum brasilense iaaC and, human HES1. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. Zebrafish ES1 is expressed specifically in adult photoreceptor cells and appears to be a cytoplasmic protein. A. brasilense iaaC is involved in controlling IAA biosynthesis. |
| >TIGR00379 cobB cobyrinic acid a,c-diamide synthase | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.0087 Score=62.66 Aligned_cols=84 Identities=19% Similarity=0.254 Sum_probs=51.1
Q ss_pred cEEEEEECCCCchH---HHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCC-----chhHH
Q 046651 5 VRTLLIDNYDSYTY---NIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPE-----DIGIC 76 (392)
Q Consensus 5 ~r~LlIDnyDSyT~---nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~-----d~gi~ 76 (392)
+||.++-.. .|.+ .=+..|++ .|++++.++.-.. +++ ..+|+|+|.||- |.... ..++
T Consensus 245 ~~Iava~d~-afnFy~~~~~~~L~~-~g~~~~~~~~~~d--~~l-------~~~d~l~ipGG~--~~~~~~~l~~~~~~- 310 (449)
T TIGR00379 245 VRIAVAQDQ-AFNFYYQDNLDALTH-NAAELVPFSPLED--TEL-------PDVDAVYIGGGF--PELFAEELSQNQAL- 310 (449)
T ss_pred cEEEEEech-hhceeHHHHHHHHHH-CCCEEEEECCccC--CCC-------CCCCEEEeCCcH--HHHHHHHHHhhhHH-
Confidence 678777542 3332 34466766 6998888765211 122 358999996654 22111 1122
Q ss_pred HHHHHH--cCCCCEEEEcHHHHHHHHHh
Q 046651 77 LRVLLE--CWDVPILGVCLGHQALGFVH 102 (392)
Q Consensus 77 ~~ll~~--~~~iPILGVCLGhQ~La~a~ 102 (392)
.+.|++ ..+.||||+|-|+|+|+...
T Consensus 311 ~~~i~~~~~~G~pv~g~CgG~~~L~~~i 338 (449)
T TIGR00379 311 RDSIKTFIHQGLPIYGECGGLMYLSQSL 338 (449)
T ss_pred HHHHHHHHHcCCCEEEEcHHHHHHHhhh
Confidence 233333 24899999999999999986
|
This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation. |
| >cd03134 GATase1_PfpI_like A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.017 Score=51.21 Aligned_cols=47 Identities=19% Similarity=0.243 Sum_probs=33.4
Q ss_pred CcCEEEECCCCCCCCCCCchhHHHHHHHH--cCCCCEEEEcHHHHHHHHH
Q 046651 54 AFDNIVISPGPGSPACPEDIGICLRVLLE--CWDVPILGVCLGHQALGFV 101 (392)
Q Consensus 54 ~fDgIVISpGPGsp~~~~d~gi~~~ll~~--~~~iPILGVCLGhQ~La~a 101 (392)
.||.|||.+|++ +....+-....++|++ ..++||.|||-|-++|+.+
T Consensus 62 ~~D~lvvpGG~~-~~~~~~~~~~~~~l~~~~~~~~~i~~ic~G~~~La~a 110 (165)
T cd03134 62 DYDALVIPGGTN-PDKLRRDPDAVAFVRAFAEAGKPVAAICHGPWVLISA 110 (165)
T ss_pred HCCEEEECCCCC-hhhhccCHHHHHHHHHHHHcCCeEEEEchHHHHHHhc
Confidence 589999988874 2222222334566655 3599999999999999986
|
A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. This group includes proteins similar to PfpI from P. furiosus. and PH1704 from Pyrococcus horikoshii. These enzymes are ATP-independent intracellular proteases and may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For PH1704, it is believed that this Cys together with a different His in one monomer and Glu (from an adjacent monomer) forms a different catalytic triad from the typical GATase1domain. PfpI is homooligomeric. Protease activity is only found for oligomeric forms of PH1704. |
| >COG1897 MetA Homoserine trans-succinylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.022 Score=55.84 Aligned_cols=116 Identities=17% Similarity=0.195 Sum_probs=70.1
Q ss_pred CHHHHHhhhcccCCcCEEEECCCCCCCCC---CCchhHHHHHHHH--cCCCCEEEEcHHHHHHHH-HhCCeeeecCCCce
Q 046651 41 TWRDICRYLYEENAFDNIVISPGPGSPAC---PEDIGICLRVLLE--CWDVPILGVCLGHQALGF-VHGADIVHAPEPVH 114 (392)
Q Consensus 41 ~~eel~~~l~e~~~fDgIVISpGPGsp~~---~~d~gi~~~ll~~--~~~iPILGVCLGhQ~La~-a~Gg~V~~apep~h 114 (392)
+|+++.. ..|||.||+|-|----. .+-+.-+.+++.. ..=--.|=||.|.|+--+ .+|-.-...++...
T Consensus 91 tfeeVk~-----~~FDG~IiTGAPve~l~feeV~YW~el~~I~eWskt~V~STl~ICWgaqAaly~~yGv~K~~l~~Kl~ 165 (307)
T COG1897 91 TFEEVKD-----QKFDGLIITGAPVELLPFEEVAYWEELKQIFEWSKTHVTSTLHICWGAQAALYYFYGVPKYTLPEKLS 165 (307)
T ss_pred cHHHHhh-----cccCceEEeCCcccccCchhhhhHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHcCCCccccchhhh
Confidence 4677776 89999999987743222 2223444455543 224467899999996544 46777777777666
Q ss_pred eceeE-EEecCCcccccCCCCCCcceEEE-eeecceeecCCCC--CCcEEEEEecC
Q 046651 115 GRLSE-IVHNGDRLFHDIPSGQNSGFKVV-RYHSLIIDADSLP--KELIPIAWSNS 166 (392)
Q Consensus 115 G~~s~-i~h~g~~LF~~ips~~~s~f~Vv-ryHSl~V~~~sLP--~~l~~iAwt~~ 166 (392)
|...- +....+.|+.|+... |.+- .-|.. |..+.+. ++|++++.+..
T Consensus 166 GVy~h~~l~p~~~l~rGfdd~----f~~PhSR~t~-~~~e~i~~~~~LeIL~es~e 216 (307)
T COG1897 166 GVYKHDILSPHSLLTRGFDDS----FLAPHSRYTD-VPKEDILAVPDLEILAESKE 216 (307)
T ss_pred ceeeccccCccchhhccCCcc----ccCccccccc-CCHHHHhhCCCceeeecccc
Confidence 65432 334577889888766 5543 11222 2222122 36888887765
|
|
| >cd03147 GATase1_Ydr533c_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.019 Score=55.12 Aligned_cols=49 Identities=12% Similarity=0.150 Sum_probs=36.1
Q ss_pred CCcCEEEECCCCCCCCCCCchhHHHHHHHH--cCCCCEEEEcHHHHHHHHH
Q 046651 53 NAFDNIVISPGPGSPACPEDIGICLRVLLE--CWDVPILGVCLGHQALGFV 101 (392)
Q Consensus 53 ~~fDgIVISpGPGsp~~~~d~gi~~~ll~~--~~~iPILGVCLGhQ~La~a 101 (392)
.+||+|+|.||.|...+..+-..+.+++++ ..++||-.||-|-++|..+
T Consensus 93 ~dYDav~iPGG~g~~~dl~~~~~l~~ll~~f~~~gK~iaAIChgp~~L~~a 143 (231)
T cd03147 93 DDYGIFFVAGGHGTLFDFPHATNLQKIAQQIYANGGVVAAVCHGPAILANL 143 (231)
T ss_pred hhCcEEEECCCCchhhhcccCHHHHHHHHHHHHcCCEEEEEChHHHHHHhh
Confidence 579999998887654443322334566655 3589999999999999987
|
Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. This group includes proteins similar to S. cerevisiae Ydr533c. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and Glu residue form a different catalytic triad from the typical GATase1domain. Ydr533c protein is a homodimer. |
| >TIGR00313 cobQ cobyric acid synthase CobQ | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.0077 Score=63.59 Aligned_cols=84 Identities=17% Similarity=0.178 Sum_probs=44.3
Q ss_pred cEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCC---chhHHHHHHH
Q 046651 5 VRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPE---DIGICLRVLL 81 (392)
Q Consensus 5 ~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~---d~gi~~~ll~ 81 (392)
+||.|+..--.+.+.=++.|+.. + .+++... .+++ ..+|+|+|.||.-...... ..++ .+.|+
T Consensus 248 ~~Iav~~~~~~~nf~~~~~L~~~---~--~~~f~~~-~~~l-------~~~d~lilpGg~~~~~~~~~l~~~~~-~~~i~ 313 (475)
T TIGR00313 248 IRIGVVRLPRISNFTDFEPLRYE---A--FVKFLDL-DDSL-------TGCDAVIIPGSKSTIADLYALKQSGF-AEEIL 313 (475)
T ss_pred cEEEEEcCCcccCccChHHHhhC---C--CeEEeCC-cccc-------ccCCEEEECCcchHHHHHHHHHhcCh-HHHHH
Confidence 67888872222222245566552 2 2222221 1233 4589999944431111111 1122 23333
Q ss_pred H--cCCCCEEEEcHHHHHHHHHh
Q 046651 82 E--CWDVPILGVCLGHQALGFVH 102 (392)
Q Consensus 82 ~--~~~iPILGVCLGhQ~La~a~ 102 (392)
+ ..+.||||||.|+|+|+...
T Consensus 314 ~~~~~G~pvlgiCgG~q~Lg~~i 336 (475)
T TIGR00313 314 DFAKEGGIVIGICGGYQMLGKEL 336 (475)
T ss_pred HHHHcCCcEEEEcHHHHHhhhhh
Confidence 3 24899999999999999974
|
|
| >PF07685 GATase_3: CobB/CobQ-like glutamine amidotransferase domain; InterPro: IPR011698 This group of enzymes was suggested to be related to the MinD family of ATPases involved in regulation of cell division in bacteria and archaea [] | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.0059 Score=54.93 Aligned_cols=49 Identities=24% Similarity=0.200 Sum_probs=30.2
Q ss_pred CCcCEEEECCCCCCCCCC---CchhHHHHHHHH--cCCCCEEEEcHHHHHHHHHh
Q 046651 53 NAFDNIVISPGPGSPACP---EDIGICLRVLLE--CWDVPILGVCLGHQALGFVH 102 (392)
Q Consensus 53 ~~fDgIVISpGPGsp~~~---~d~gi~~~ll~~--~~~iPILGVCLGhQ~La~a~ 102 (392)
..+|+|+|.||.-..... +..++. .-|++ ..+.||+|+|-|+|+|++..
T Consensus 6 ~~~D~i~lpGg~pe~~~~~l~~~~~~~-~~I~~~~~~G~pi~aeCGG~~~Lg~~i 59 (158)
T PF07685_consen 6 PDADGIYLPGGYPELFALELSRNRGLK-EAIREAAEAGGPIYAECGGYQYLGESI 59 (158)
T ss_pred CCCCEEEECCCcHHHHHHHHHHHhCHH-HHHHHHHHcCCcEEEEchHHHHHHHHH
Confidence 579999994332111111 111222 33333 34899999999999999986
|
Further sequence analysis suggests a model for the interaction of CobB and CobQ with their respective substrates []. CobB and CobQ were also found to contain unusual Triad family (class I) glutamine amidotransferase domains with conserved Cys and His residues, but lacking the Glu residue of the catalytic triad []. ; GO: 0003824 catalytic activity, 0009236 cobalamin biosynthetic process |
| >cd03144 GATase1_ScBLP_like Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Saccharomyces cerevisiae biotin-apoprotein ligase (ScBLP) | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.017 Score=50.04 Aligned_cols=42 Identities=24% Similarity=0.318 Sum_probs=25.4
Q ss_pred CCcCEEEECCCCCCCCCC----CchhHHHHHHHH--cCCCCEEEEcHHHHHH
Q 046651 53 NAFDNIVISPGPGSPACP----EDIGICLRVLLE--CWDVPILGVCLGHQAL 98 (392)
Q Consensus 53 ~~fDgIVISpGPGsp~~~----~d~gi~~~ll~~--~~~iPILGVCLGhQ~L 98 (392)
..+|.||+ || |+.... ...+ .+.|++ ..+.|+||||+|.-+.
T Consensus 43 ~~ad~lVl-PG-Ga~~~~~~~L~~~g--~~~i~~~v~~g~p~LGIClGAy~a 90 (114)
T cd03144 43 SKTALLVV-PG-GADLPYCRALNGKG--NRRIRNFVRNGGNYLGICAGAYLA 90 (114)
T ss_pred hCCCEEEE-CC-CChHHHHHHHHhhC--cHHHHHHHHCCCcEEEEecCccce
Confidence 46899999 55 654321 1122 233333 2489999999995443
|
Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Saccharomyces cerevisiae biotin-apoprotein ligase (ScBLP). Biotin-apoprotein ligase modifies proteins by covalently attaching biotin. ScBLP is known to biotinylate acety-CoA carboxylase and pyruvate carboxylase. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, the Cys residue found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow in a typical GATase1 domain is conserved. |
| >cd03132 GATase1_catalase Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases | Back alignment and domain information |
|---|
Probab=95.23 E-value=0.044 Score=47.60 Aligned_cols=77 Identities=22% Similarity=0.203 Sum_probs=47.6
Q ss_pred HHHHHHHHhCCCCeEEEeCCCC--------------CHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHH--
Q 046651 19 NIYQELSTINGVPPVVVRNDEW--------------TWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLE-- 82 (392)
Q Consensus 19 nl~q~L~~v~G~~pvVV~nd~~--------------~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~-- 82 (392)
.+++.+.. +|.++.++..+.- +++++.. ..||.|||.+|++......+..-..++|++
T Consensus 19 ~~~~~~~~-a~~~v~vvs~~~~~v~s~~g~~i~~~~~l~~~~~-----~~~D~liVpGg~~~~~~~~~~~~l~~~l~~~~ 92 (142)
T cd03132 19 ALKAALKA-AGANVKVVAPTLGGVVDSDGKTLEVDQTYAGAPS-----VLFDAVVVPGGAEAAFALAPSGRALHFVTEAF 92 (142)
T ss_pred HHHHHHHH-CCCEEEEEecCcCceecCCCcEEecceeecCCCh-----hhcCEEEECCCccCHHHHccChHHHHHHHHHH
Confidence 35566665 7888888764321 1112111 259999997776543221122234556655
Q ss_pred cCCCCEEEEcHHHHHHHHH
Q 046651 83 CWDVPILGVCLGHQALGFV 101 (392)
Q Consensus 83 ~~~iPILGVCLGhQ~La~a 101 (392)
..+.||.+||-|-.+|+.+
T Consensus 93 ~~~~~I~aic~G~~~La~a 111 (142)
T cd03132 93 KHGKPIGAVGEGSDLLEAA 111 (142)
T ss_pred hcCCeEEEcCchHHHHHHc
Confidence 3589999999999999985
|
Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Catalase catalyzes the dismutation of hydrogen peroxide (H2O2) to water and oxygen. This group includes the large catalases: Neurospora crassa Catalase-1 and Catalase-3 and, Escherichia coli HP-II. This GATase1-like domain has an essential role in HP-II catalase activity. However, it lacks enzymatic activity and the catalytic triad typical of GATase1 domains. Catalase-1 and -3 are homotetrameric, HP-II is homohexameric. It has been proposed that this domain may facilitate the folding and oligomerization process. The interface between this GATase1-like domain of HP-II and the core of the subunit forms part of a channel which provides access to the deeply buried catalase active sites of HPII. Catalase-1 is associated with non-growing cells; C |
| >cd03135 GATase1_DJ-1 Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1 | Back alignment and domain information |
|---|
Probab=95.19 E-value=0.069 Score=46.88 Aligned_cols=89 Identities=19% Similarity=0.252 Sum_probs=52.3
Q ss_pred EEEEECCCCchH-HHHHHHHHhCCCCeEEEeCCCC---------------CHHHHHhhhcccCCcCEEEECCCCCCCCCC
Q 046651 7 TLLIDNYDSYTY-NIYQELSTINGVPPVVVRNDEW---------------TWRDICRYLYEENAFDNIVISPGPGSPACP 70 (392)
Q Consensus 7 ~LlIDnyDSyT~-nl~q~L~~v~G~~pvVV~nd~~---------------~~eel~~~l~e~~~fDgIVISpGPGsp~~~ 70 (392)
+|+.|....... .+++.|.. .|.++.++..+.- +++++.. .+||.|||.||++.+...
T Consensus 3 il~~~gf~~~e~~~~~~~~~~-a~~~v~~vs~~~~~~~~~~~g~~v~~~~~~~~~~~-----~~~D~liipGg~~~~~~~ 76 (163)
T cd03135 3 VILADGFEEIEAVTPVDVLRR-AGIEVTTASLEKKLAVGSSHGIKVKADKTLSDVNL-----DDYDAIVIPGGLPGAQNL 76 (163)
T ss_pred EEecCCcchHHHHHHHHHHHH-CCCEEEEEEcCCCceEeccCCCEEEecCCHhHcCC-----CCCCEEEECCCCchHHHH
Confidence 455565544443 34555555 5677666643321 1222211 479999997776433222
Q ss_pred CchhHHHHHHHH--cCCCCEEEEcHHHHHHHHH
Q 046651 71 EDIGICLRVLLE--CWDVPILGVCLGHQALGFV 101 (392)
Q Consensus 71 ~d~gi~~~ll~~--~~~iPILGVCLGhQ~La~a 101 (392)
.+.....++|++ ..+.+|.+||-|-.+|+.+
T Consensus 77 ~~~~~l~~~l~~~~~~~~~i~~ic~g~~~La~a 109 (163)
T cd03135 77 ADNEKLIKLLKEFNAKGKLIAAICAAPAVLAKA 109 (163)
T ss_pred HhCHHHHHHHHHHHHcCCEEEEEchhHHHHHHc
Confidence 222334566655 3589999999999999986
|
Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1. DJ-1 is involved in multiple physiological processes including cancer, Parkinson's disease and male fertility. It is unclear how DJ-1 functions in these. DJ-1 has been shown to possess chaperone activity. DJ-1 is preferentially expressed in the testis and moderately in other tissues; it is induced together with genes involved in oxidative stress response. The Drosophila homologue (DJ-1A) plays an essential role in oxidative stress response and neuronal maintenance. Inhibition of DJ-1A function through RNAi, results in the cellular accumulation of reactive oxygen species, organismal hypersensitivity to oxidative stress, and dysfunction and degeneration of dopaminergic and photoreceptor neurons. DJ-1 has lacks enzymatic activity and the catalytic triad of typical GATase1 domains, however it does contain the highly |
| >PRK11574 oxidative-stress-resistance chaperone; Provisional | Back alignment and domain information |
|---|
Probab=95.10 E-value=0.13 Score=47.19 Aligned_cols=49 Identities=16% Similarity=0.258 Sum_probs=33.5
Q ss_pred CCcCEEEECCCCCCCCCCCchhHHHHHHHH--cCCCCEEEEcHHHHHHHHH
Q 046651 53 NAFDNIVISPGPGSPACPEDIGICLRVLLE--CWDVPILGVCLGHQALGFV 101 (392)
Q Consensus 53 ~~fDgIVISpGPGsp~~~~d~gi~~~ll~~--~~~iPILGVCLGhQ~La~a 101 (392)
..||.|+|.||++.+....+.....++|++ ..+.+|.+||-|-.+|...
T Consensus 65 ~~~D~l~ipGG~~~~~~~~~~~~l~~~L~~~~~~g~~v~aic~G~~~ll~~ 115 (196)
T PRK11574 65 GDFDVIVLPGGIKGAECFRDSPLLVETVRQFHRSGRIVAAICAAPATVLVP 115 (196)
T ss_pred CCCCEEEECCCCchhhhhhhCHHHHHHHHHHHHCCCEEEEECHhHHHHHHh
Confidence 469999997776544432233335566665 3589999999999876543
|
|
| >KOG1907 consensus Phosphoribosylformylglycinamidine synthase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.10 E-value=0.34 Score=54.62 Aligned_cols=194 Identities=14% Similarity=0.160 Sum_probs=104.7
Q ss_pred ccEEEEEECCCCchH-HHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCC-CchhHHH----
Q 046651 4 FVRTLLIDNYDSYTY-NIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACP-EDIGICL---- 77 (392)
Q Consensus 4 ~~r~LlIDnyDSyT~-nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~-~d~gi~~---- 77 (392)
.+||.||--..++-+ .+.-.+.. .|++++-|.-.+. +.. ...| .+|-||+..||..-.+.. +..|+..
T Consensus 1058 ~PkVAilREeGvNg~rEMa~af~~-AgF~~~DVtmtDl-L~G-~~~l---d~frGlaf~GGFSYaDvLgSakGWAasil~ 1131 (1320)
T KOG1907|consen 1058 APKVAILREEGVNGDREMAAAFYA-AGFETVDVTMTDL-LAG-RHHL---DDFRGLAFCGGFSYADVLGSAKGWAASILF 1131 (1320)
T ss_pred CCceEEeeccccccHHHHHHHHHH-cCCceeeeeeehh-hcC-ceeH---hHhcceeeecCcchHhhhccccchhhheee
Confidence 468899987777754 35555655 7998877765543 221 1112 579999998886322110 1112211
Q ss_pred --HHH------HHcCCCCEEEEcHHHHHHHHH--hCCeeeecCCC---------ceeceeEEE--ecCCcccccCCCCCC
Q 046651 78 --RVL------LECWDVPILGVCLGHQALGFV--HGADIVHAPEP---------VHGRLSEIV--HNGDRLFHDIPSGQN 136 (392)
Q Consensus 78 --~ll------~~~~~iPILGVCLGhQ~La~a--~Gg~V~~apep---------~hG~~s~i~--h~g~~LF~~ips~~~ 136 (392)
.++ ....|.=-||||.|.|+|++. .|-.+...|.- .-+|...+. .+.+-+..++...
T Consensus 1132 ne~v~~QF~~F~~R~DtFslGiCNGCQlms~Lg~i~p~~~~~p~~~l~~Nes~rfE~r~~~vkI~~~~SIml~gM~gs-- 1209 (1320)
T KOG1907|consen 1132 NESVRSQFEAFFNRQDTFSLGICNGCQLMSRLGWIGPEVGKWPDVFLDHNESGRFECRFGMVKIESNVSIMLSGMAGS-- 1209 (1320)
T ss_pred ChhHHHHHHHHhcCCCceeeecccHhHHHHHhcccCccccCCCceeeecccccceeeeEEEEEeCCCchhhhccccCC--
Confidence 111 112377789999999999997 33333333321 122222222 2233344444322
Q ss_pred cceEEEeeecce---eec-----CCCCCCcEEEEEecCCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCcc
Q 046651 137 SGFKVVRYHSLI---IDA-----DSLPKELIPIAWSNSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYR 208 (392)
Q Consensus 137 s~f~VvryHSl~---V~~-----~sLP~~l~~iAwt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 208 (392)
..-|+--|... ... .-..+++..|-+.++. + .. --..-.||+++..
T Consensus 1210 -~LgvwvAHGEGRa~f~~e~~~e~~~~~gl~~iryvdd~-------------g-~~-----te~yPfNpNGS~~------ 1263 (1320)
T KOG1907|consen 1210 -VLGVWVAHGEGRATFRSEQNLEHLKKEGLVCIRYVDDY-------------G-NV-----TELYPFNPNGSPD------ 1263 (1320)
T ss_pred -ceeeEEEecccceecCcHHHHHHHhhcCeeEEEEecCC-------------C-CE-----eeecccCCCCCcc------
Confidence 24555556322 111 1123577777776652 1 00 0001223333222
Q ss_pred cccccccCCcceEEEEEecCCCEEEEeccCCCCC
Q 046651 209 HSIYSNRMRREVLMGIMHSTRPHYGVQFHPESIA 242 (392)
Q Consensus 209 ~~~~~~~~~~~~vmgi~h~~~P~~GVQFHPEsia 242 (392)
-|.||...+..|.+++-||||+.
T Consensus 1264 -----------gIAgicSpdGRhLAMMPHpER~~ 1286 (1320)
T KOG1907|consen 1264 -----------GIAGICSPDGRHLAMMPHPERVF 1286 (1320)
T ss_pred -----------cceeeeCCCCCeeeccCCchhee
Confidence 69999999999999999999964
|
|
| >PRK04155 chaperone protein HchA; Provisional | Back alignment and domain information |
|---|
Probab=94.93 E-value=0.077 Score=52.74 Aligned_cols=50 Identities=20% Similarity=0.176 Sum_probs=35.4
Q ss_pred cCCcCEEEECCCCCCCCCCCchhHHHHHHHH--cCCCCEEEEcHHHHHHHHH
Q 046651 52 ENAFDNIVISPGPGSPACPEDIGICLRVLLE--CWDVPILGVCLGHQALGFV 101 (392)
Q Consensus 52 ~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~--~~~iPILGVCLGhQ~La~a 101 (392)
...||+|+|.||.|......+-..+.+++++ ..++||..||-|-++|..+
T Consensus 145 ~~dYDaV~iPGG~g~~~dL~~~~~l~~ll~~~~~~~K~VaAICHGPa~Ll~a 196 (287)
T PRK04155 145 DSDYAAVFIPGGHGALIGLPESEDVAAALQWALDNDRFIITLCHGPAALLAA 196 (287)
T ss_pred cccccEEEECCCCchHHHHhhCHHHHHHHHHHHHcCCEEEEEChHHHHHHHc
Confidence 3689999998887765442222234555555 3599999999999888764
|
|
| >PF01965 DJ-1_PfpI: DJ-1/PfpI family; InterPro: IPR002818 This signature defines a diverse group of protein families which include proteins involved in RNA-protein interaction regulation, thiamine biosynthesis, Ras-related signal transduction, and those with protease activity | Back alignment and domain information |
|---|
Probab=94.76 E-value=0.0086 Score=52.73 Aligned_cols=56 Identities=25% Similarity=0.361 Sum_probs=40.4
Q ss_pred CHHHHHhhhcccCCcCEEEECCCCCCCCCCC-chhHHHHHHHH--cCCCCEEEEcHHHHHHHHH
Q 046651 41 TWRDICRYLYEENAFDNIVISPGPGSPACPE-DIGICLRVLLE--CWDVPILGVCLGHQALGFV 101 (392)
Q Consensus 41 ~~eel~~~l~e~~~fDgIVISpGPGsp~~~~-d~gi~~~ll~~--~~~iPILGVCLGhQ~La~a 101 (392)
+++++.. ..||+|||.||.+.+.... +-..+.+++++ ..++||.+||-|-.+|+.+
T Consensus 29 ~l~~~~~-----~~yDalilpGG~~~~~~l~~~~~~l~~~~~~~~~~~k~iaaIC~g~~~L~~~ 87 (147)
T PF01965_consen 29 TLDEIDP-----SDYDALILPGGHGGADDLRTDSKDLLELLKEFYEAGKPIAAICHGPAVLAAA 87 (147)
T ss_dssp EGGGHTG-----GGESEEEEE-BTHHHHHHTTCHHHHHHHHHHHHHTT-EEEEETTCHHHHHHT
T ss_pred cHHHCCh-----hhCCEEEECCCCchhhhHhhHHHHHHHHHHHHHHcCCeEEecCCCcchhhcc
Confidence 3677765 6799999988888655433 43445666666 3599999999999988886
|
Examples of annotation are: Catalase A, 1.11.1.6 from EC Catalase II ES-1 DJ-1 RNA-binding protein, regulatory subunit [] protease I FGAM I, 6.3.5.3 from EC Putative/Intracellular protease Chaperone hchA Transcriptional regulator, AraC family THiJ/PfpI family [,] ; PDB: 2FEX_C 1OY1_B 1VHQ_B 3UK7_B 1OI4_A 1QVW_B 1QVV_D 1QVZ_A 1RW7_A 1G2I_C .... |
| >PRK13896 cobyrinic acid a,c-diamide synthase; Provisional | Back alignment and domain information |
|---|
Probab=94.70 E-value=0.043 Score=57.52 Aligned_cols=83 Identities=18% Similarity=0.202 Sum_probs=46.4
Q ss_pred cEEEEEECC-CC--chHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCC-ch---hHHH
Q 046651 5 VRTLLIDNY-DS--YTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPE-DI---GICL 77 (392)
Q Consensus 5 ~r~LlIDny-DS--yT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~-d~---gi~~ 77 (392)
+||.|.-.. =+ |..|| ++|++ + ++++.+.. ..-+++ .++|+|+|.||- |.... +. +..
T Consensus 234 ~~iavA~D~AF~FyY~enl-~~L~~-~-aelv~fSP--l~~~~l-------p~~D~l~lpGG~--~e~~~~~L~~n~~~- 298 (433)
T PRK13896 234 PTVAVARDAAFCFRYPATI-ERLRE-R-ADVVTFSP--VAGDPL-------PDCDGVYLPGGY--PELHADALADSPAL- 298 (433)
T ss_pred CeEEEEEcCccceeCHHHH-HHHHh-c-CcEEEEcC--CCCCCC-------CCCCEEEeCCCc--hhhHHHHHHhCCcH-
Confidence 466665321 12 34454 55666 4 66655433 211222 358999996655 33211 11 112
Q ss_pred HHHHH--cCCCCEEEEcHHHHHHHHHh
Q 046651 78 RVLLE--CWDVPILGVCLGHQALGFVH 102 (392)
Q Consensus 78 ~ll~~--~~~iPILGVCLGhQ~La~a~ 102 (392)
+-|++ ..+.||+|+|-|+|+|+...
T Consensus 299 ~~i~~~~~~G~pi~aeCGG~q~L~~~i 325 (433)
T PRK13896 299 DELADRAADGLPVLGECGGLMALAESL 325 (433)
T ss_pred HHHHHHHHCCCcEEEEehHHHHhhccc
Confidence 33333 24899999999999999975
|
|
| >cd03148 GATase1_EcHsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31) | Back alignment and domain information |
|---|
Probab=94.63 E-value=0.11 Score=49.92 Aligned_cols=49 Identities=16% Similarity=0.143 Sum_probs=35.4
Q ss_pred CCcCEEEECCCCCCCCCCCchhHHHHHHHH--cCCCCEEEEcHHHHHHHHH
Q 046651 53 NAFDNIVISPGPGSPACPEDIGICLRVLLE--CWDVPILGVCLGHQALGFV 101 (392)
Q Consensus 53 ~~fDgIVISpGPGsp~~~~d~gi~~~ll~~--~~~iPILGVCLGhQ~La~a 101 (392)
.+||+|+|.||.|...+..+-....+++++ ..++||-.||-|-++|..+
T Consensus 95 ~dYDav~iPGG~g~~~dl~~~~~l~~ll~~f~~~gK~VaAICHGp~~L~~a 145 (232)
T cd03148 95 SEYAAVFIPGGHGALIGIPESQDVAAALQWAIKNDRFVITLCHGPAAFLAA 145 (232)
T ss_pred hhceEEEECCCCCChhhcccCHHHHHHHHHHHHcCCEEEEECcHHHHHHhc
Confidence 579999998887766543332334556655 3589999999999887764
|
Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31). This group includes proteins similar to EcHsp31. EcHsp31 has chaperone activity. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and, an Asp (rather than a Glu) residue form a different catalytic triad from the typical GATase1 domain. EcHsp31 is a homodimer. |
| >COG0693 ThiJ Putative intracellular protease/amidase [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.17 E-value=0.21 Score=45.45 Aligned_cols=50 Identities=20% Similarity=0.313 Sum_probs=35.8
Q ss_pred CCcCEEEECCCCCCCCCCCchhHHHHHHHH--cCCCCEEEEcHHHHHHHHHh
Q 046651 53 NAFDNIVISPGPGSPACPEDIGICLRVLLE--CWDVPILGVCLGHQALGFVH 102 (392)
Q Consensus 53 ~~fDgIVISpGPGsp~~~~d~gi~~~ll~~--~~~iPILGVCLGhQ~La~a~ 102 (392)
.+||.|+|.||...+.......-..+++++ ..++||..||-|-++|+.+-
T Consensus 65 ~~ydal~ipGG~~~~~~~~~~~~~~~~v~~~~~~~k~vaaIC~g~~~L~~ag 116 (188)
T COG0693 65 ADYDALVIPGGDHGPEYLRPDPDLLAFVRDFYANGKPVAAICHGPAVLAAAG 116 (188)
T ss_pred hHCCEEEECCCccchhhccCcHHHHHHHHHHHHcCCEEEEEChhHHHHhccc
Confidence 479999998884444332221445566665 35999999999999999873
|
|
| >cd03141 GATase1_Hsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein | Back alignment and domain information |
|---|
Probab=93.57 E-value=0.1 Score=49.51 Aligned_cols=49 Identities=29% Similarity=0.220 Sum_probs=35.4
Q ss_pred CCcCEEEECCCCCCCCCCCchhHHHHHHHH--cCCCCEEEEcHHHHHHHHH
Q 046651 53 NAFDNIVISPGPGSPACPEDIGICLRVLLE--CWDVPILGVCLGHQALGFV 101 (392)
Q Consensus 53 ~~fDgIVISpGPGsp~~~~d~gi~~~ll~~--~~~iPILGVCLGhQ~La~a 101 (392)
..||+|+|.||++......+-....++|++ ..+++|.+||-|-++|+.+
T Consensus 89 ~~~dal~ipGG~~~~~~l~~~~~l~~~l~~~~~~~k~iaaIC~g~~~La~a 139 (221)
T cd03141 89 SDYDAIFIPGGHGPMFDLPDNPDLQDLLREFYENGKVVAAVCHGPAALLNV 139 (221)
T ss_pred hHceEEEECCCcccccccccCHHHHHHHHHHHHcCCEEEEEcchHHHHHhc
Confidence 479999998887654433222335566655 3589999999999999986
|
Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein (EcHsp31). This group includes EcHsp31 and Saccharomyces cerevisiae Ydr533c protein. EcHsp31 has chaperone activity. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1 domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For EcHsp31, this Cys together with a different His and, an Asp (rather than a Glu) residue form a different |
| >PRK05282 (alpha)-aspartyl dipeptidase; Validated | Back alignment and domain information |
|---|
Probab=93.38 E-value=0.11 Score=50.06 Aligned_cols=90 Identities=18% Similarity=0.231 Sum_probs=55.6
Q ss_pred ccEEEEEEC------CCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCC--CCchhH
Q 046651 4 FVRTLLIDN------YDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPAC--PEDIGI 75 (392)
Q Consensus 4 ~~r~LlIDn------yDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~--~~d~gi 75 (392)
..|+++|-. ++.|.....+.++. .|++++.++.. ++....| ...|+|+|+||--.-.. ..+.++
T Consensus 31 ~~~v~fIPtAs~~~~~~~y~~~~~~af~~-lG~~v~~l~~~----~d~~~~l---~~ad~I~v~GGnt~~l~~~l~~~gl 102 (233)
T PRK05282 31 RRKAVFIPYAGVTQSWDDYTAKVAEALAP-LGIEVTGIHRV----ADPVAAI---ENAEAIFVGGGNTFQLLKQLYERGL 102 (233)
T ss_pred CCeEEEECCCCCCCCHHHHHHHHHHHHHH-CCCEEEEeccc----hhhHHHH---hcCCEEEECCccHHHHHHHHHHCCc
Confidence 467888844 33466667788877 79998777543 3333334 57999999877422110 111221
Q ss_pred HHHHHHH--cCCCCEEEEcHHHHHHHHHh
Q 046651 76 CLRVLLE--CWDVPILGVCLGHQALGFVH 102 (392)
Q Consensus 76 ~~~ll~~--~~~iPILGVCLGhQ~La~a~ 102 (392)
.+.|++ ..++|++|+|-|.-+++...
T Consensus 103 -~~~l~~~~~~G~~~~G~SAGAii~~~~i 130 (233)
T PRK05282 103 -LAPIREAVKNGTPYIGWSAGANVAGPTI 130 (233)
T ss_pred -HHHHHHHHHCCCEEEEECHHHHhhhccc
Confidence 233333 24899999999987766543
|
|
| >cd03140 GATase1_PfpI_3 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus | Back alignment and domain information |
|---|
Probab=92.68 E-value=0.62 Score=41.83 Aligned_cols=47 Identities=17% Similarity=0.246 Sum_probs=33.7
Q ss_pred CCcCEEEECCCCCCCCCCCchhHHHHHHHH--cCCCCEEEEcHHHHHHHHH
Q 046651 53 NAFDNIVISPGPGSPACPEDIGICLRVLLE--CWDVPILGVCLGHQALGFV 101 (392)
Q Consensus 53 ~~fDgIVISpGPGsp~~~~d~gi~~~ll~~--~~~iPILGVCLGhQ~La~a 101 (392)
.+||.|||.||+. +....+ ....++|++ .++.+|.+||-|-++|+.+
T Consensus 59 ~~~D~l~I~Gg~~-~~~~~~-~~l~~~l~~~~~~~~~i~aic~G~~~La~a 107 (170)
T cd03140 59 EDYDLLILPGGDS-WDNPEA-PDLAGLVRQALKQGKPVAAICGATLALARA 107 (170)
T ss_pred hHccEEEEcCCcc-cccCCc-HHHHHHHHHHHHcCCEEEEEChHHHHHHHC
Confidence 3699999988764 222222 234566665 3589999999999999986
|
Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. |
| >cd03138 GATase1_AraC_2 AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain | Back alignment and domain information |
|---|
Probab=92.65 E-value=0.22 Score=45.40 Aligned_cols=49 Identities=18% Similarity=0.160 Sum_probs=34.4
Q ss_pred CCcCEEEECCCCCCCC--CCCchhHHHHHHHH--cCCCCEEEEcHHHHHHHHH
Q 046651 53 NAFDNIVISPGPGSPA--CPEDIGICLRVLLE--CWDVPILGVCLGHQALGFV 101 (392)
Q Consensus 53 ~~fDgIVISpGPGsp~--~~~d~gi~~~ll~~--~~~iPILGVCLGhQ~La~a 101 (392)
.+||.|||.||++... ...+-....++|++ ..+.+|.+||-|-.+|+.+
T Consensus 68 ~~~D~liIpgg~~~~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~a 120 (195)
T cd03138 68 PAPDLVIVPGLGGDPDELLLADNPALIAWLRRQHANGATVAAACTGVFLLAEA 120 (195)
T ss_pred CCCCEEEECCCcCCchhhhhhccHHHHHHHHHHHHcCCEEEEecHHHHHHHHc
Confidence 5799999977765532 12222334566655 3589999999999999985
|
A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. |
| >TIGR01383 not_thiJ DJ-1 family protein | Back alignment and domain information |
|---|
Probab=92.39 E-value=0.15 Score=45.62 Aligned_cols=49 Identities=18% Similarity=0.255 Sum_probs=34.0
Q ss_pred CCcCEEEECCCCCCCCCCCchhHHHHHHHH--cCCCCEEEEcHHHHHHHHH
Q 046651 53 NAFDNIVISPGPGSPACPEDIGICLRVLLE--CWDVPILGVCLGHQALGFV 101 (392)
Q Consensus 53 ~~fDgIVISpGPGsp~~~~d~gi~~~ll~~--~~~iPILGVCLGhQ~La~a 101 (392)
..||.|||.||++.+....+-....++|++ ..+.+|.+||-|-.+|+.+
T Consensus 62 ~~~D~l~v~Gg~~~~~~~~~~~~l~~~l~~~~~~~~~i~~ic~G~~~La~a 112 (179)
T TIGR01383 62 EEFDAIVLPGGMPGAENLRNSKLLLNILKKQESKGKLVAAICAAPAVLLAA 112 (179)
T ss_pred ccCCEEEECCCchHHHHHhhCHHHHHHHHHHHHCCCEEEEEChhHHHHHhc
Confidence 569999997665322221222335566665 3589999999999999986
|
This model represents the DJ-1 clade of the so-called ThiJ/PfpI family of proteins. PfpI, represented by a distinct model, is a putative intracellular cysteine protease. DJ-1 is described as an oncogene that acts cooperatively with H-Ras. Many members of the DJ-1 clade are annotated (apparently incorrectly) as ThiJ, a protein of thiamine biosynthesis. However, published reports of ThiJ activity and identification of a ThiJ/ThiD bifunctional protein describe an unrelated locus mapping near ThiM, rather than the DJ-1 homolog of E. coli. The ThiJ designation for this family may be spurious; the cited paper PubMed:8885414 refers to a locus near thiD and thiM in E. coli, unlike the gene represented here. Current public annotation reflects ThiJ/ThiD bifunctional activity, apparently a property of ThiD and not of this locus. |
| >cd03129 GAT1_Peptidase_E_like Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins | Back alignment and domain information |
|---|
Probab=91.65 E-value=0.59 Score=43.64 Aligned_cols=92 Identities=20% Similarity=0.141 Sum_probs=57.3
Q ss_pred ccEEEEEECCC----CchHHHHHHHHHhCCCCeEEEeCC-CCCHHHHHhhhcccCCcCEEEECCCCCCCCCC----Cchh
Q 046651 4 FVRTLLIDNYD----SYTYNIYQELSTINGVPPVVVRND-EWTWRDICRYLYEENAFDNIVISPGPGSPACP----EDIG 74 (392)
Q Consensus 4 ~~r~LlIDnyD----SyT~nl~q~L~~v~G~~pvVV~nd-~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~----~d~g 74 (392)
..|+++|..-. .|.....+.+.+ .|++.+.+..- ..+-+++...| ...|+|+|+|| ++... .+.+
T Consensus 29 ~~~i~~iptA~~~~~~~~~~~~~~~~~-lG~~~~~~~~~~~~~~~~~~~~l---~~ad~I~~~GG--~~~~~~~~l~~t~ 102 (210)
T cd03129 29 GARVLFIPTASGDRDEYGEEYRAAFER-LGVEVVHLLLIDTANDPDVVARL---LEADGIFVGGG--NQLRLLSVLRETP 102 (210)
T ss_pred CCeEEEEeCCCCChHHHHHHHHHHHHH-cCCceEEEeccCCCCCHHHHHHH---hhCCEEEEcCC--cHHHHHHHHHhCC
Confidence 46888986543 455566777777 69887765442 12234455555 68999999775 33221 1112
Q ss_pred HHHHHHHH-cCCCCEEEEcHHHHHHHHH
Q 046651 75 ICLRVLLE-CWDVPILGVCLGHQALGFV 101 (392)
Q Consensus 75 i~~~ll~~-~~~iPILGVCLGhQ~La~a 101 (392)
....++.. .++.|+.|+|-|..+++..
T Consensus 103 ~~~~i~~~~~~G~v~~G~SAGA~~~~~~ 130 (210)
T cd03129 103 LLDAILKRVARGVVIGGTSAGAAVMGET 130 (210)
T ss_pred hHHHHHHHHHcCCeEEEcCHHHHHhhhc
Confidence 22223322 2589999999999999885
|
Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E and, extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Peptidase E and cyanophycinases are thought to have a Ser-His-Glu catalytic triad which differs from |
| >cd03137 GATase1_AraC_1 AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain | Back alignment and domain information |
|---|
Probab=90.86 E-value=0.56 Score=42.35 Aligned_cols=48 Identities=23% Similarity=0.351 Sum_probs=34.0
Q ss_pred CCcCEEEECCCCCCCCCCCchhHHHHHHHH--cCCCCEEEEcHHHHHHHHH
Q 046651 53 NAFDNIVISPGPGSPACPEDIGICLRVLLE--CWDVPILGVCLGHQALGFV 101 (392)
Q Consensus 53 ~~fDgIVISpGPGsp~~~~d~gi~~~ll~~--~~~iPILGVCLGhQ~La~a 101 (392)
..||.|||.||.+......+ .-..++|++ ..+.+|.+||-|-++|+.+
T Consensus 63 ~~~D~liipGg~~~~~~~~~-~~l~~~l~~~~~~~~~i~aic~g~~~La~a 112 (187)
T cd03137 63 AAADTVIVPGGPDVDGRPPP-PALLAALRRAAARGARVASVCTGAFVLAEA 112 (187)
T ss_pred CCCCEEEECCCcccccccCC-HHHHHHHHHHHhcCCEEEEECHHHHHHHHc
Confidence 57999999877654322223 224555555 3589999999999999986
|
A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. |
| >PRK11104 hemG protoporphyrinogen oxidase; Provisional | Back alignment and domain information |
|---|
Probab=89.66 E-value=1.9 Score=39.50 Aligned_cols=82 Identities=15% Similarity=0.106 Sum_probs=45.7
Q ss_pred cEEEEEEC-CCCchHHHHHHHHHhCC--CCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCC-ch-hHHHHH
Q 046651 5 VRTLLIDN-YDSYTYNIYQELSTING--VPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPE-DI-GICLRV 79 (392)
Q Consensus 5 ~r~LlIDn-yDSyT~nl~q~L~~v~G--~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~-d~-gi~~~l 79 (392)
|++|||=. ....|.-+++.|++.++ .++.++...+....++ ..||.||| |+|-.-.... .+ .++.+.
T Consensus 1 MkilIvY~S~~G~T~~iA~~Ia~~l~~g~~v~~~~~~~~~~~~l-------~~yD~vIl-Gspi~~G~~~~~~~~fl~~~ 72 (177)
T PRK11104 1 MKTLILYSSRDGQTRKIASYIASELKEGIQCDVVNLHRIEEPDL-------SDYDRVVI-GASIRYGHFHSALYKFVKKH 72 (177)
T ss_pred CcEEEEEECCCChHHHHHHHHHHHhCCCCeEEEEEhhhcCccCH-------HHCCEEEE-ECccccCCcCHHHHHHHHHH
Confidence 78877743 34568889999988764 3566665554322233 45999999 3331111111 11 222222
Q ss_pred HHHcCCCCEEEEcHH
Q 046651 80 LLECWDVPILGVCLG 94 (392)
Q Consensus 80 l~~~~~iPILGVCLG 94 (392)
.....++|+.-+|.|
T Consensus 73 ~~~l~~K~v~~F~v~ 87 (177)
T PRK11104 73 ATQLNQMPSAFFSVN 87 (177)
T ss_pred HHHhCCCeEEEEEec
Confidence 233357887777766
|
|
| >COG3442 Predicted glutamine amidotransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.72 E-value=0.34 Score=46.77 Aligned_cols=72 Identities=18% Similarity=0.197 Sum_probs=40.9
Q ss_pred HHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCC--CCchhHHHHHHHH--cCCCCEEEEcHHHHHH
Q 046651 23 ELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPAC--PEDIGICLRVLLE--CWDVPILGVCLGHQAL 98 (392)
Q Consensus 23 ~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~--~~d~gi~~~ll~~--~~~iPILGVCLGhQ~L 98 (392)
.-++..|+.+.|+.-+.- +.+.. ..+|-+++.||--.-.. .+|..-...-|++ ..++|+|.||-|.|+|
T Consensus 28 ~ra~~rgi~v~i~~vsl~--d~~~~-----~~~Dl~~~GGgqD~eQ~i~t~d~~~k~~~l~~~i~~g~p~laiCgg~QlL 100 (250)
T COG3442 28 QRAEKRGIKVEIVEVSLT--DTFPD-----DSYDLYFLGGGQDYEQEIATRDLLTKKEGLKDAIENGKPVLAICGGYQLL 100 (250)
T ss_pred HHHHhcCCceEEEEeecC--CCCCc-----ccccEEEecCchHHHHHHHhhhhccccHHHHHHHhcCCcEEEEccchhhc
Confidence 334446888877654432 12221 46899999655422111 1121111122332 2499999999999999
Q ss_pred HHH
Q 046651 99 GFV 101 (392)
Q Consensus 99 a~a 101 (392)
++.
T Consensus 101 G~y 103 (250)
T COG3442 101 GQY 103 (250)
T ss_pred cce
Confidence 986
|
|
| >cd03136 GATase1_AraC_ArgR_like AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain | Back alignment and domain information |
|---|
Probab=87.52 E-value=1.2 Score=40.31 Aligned_cols=47 Identities=19% Similarity=0.150 Sum_probs=33.6
Q ss_pred CCcCEEEECCCCCCCCCCCchhHHHHHHHH--cCCCCEEEEcHHHHHHHHH
Q 046651 53 NAFDNIVISPGPGSPACPEDIGICLRVLLE--CWDVPILGVCLGHQALGFV 101 (392)
Q Consensus 53 ~~fDgIVISpGPGsp~~~~d~gi~~~ll~~--~~~iPILGVCLGhQ~La~a 101 (392)
.+||.|||.||++.. ..+-....++|++ ..+..|.+||-|-.+|+.+
T Consensus 63 ~~~D~liipgg~~~~--~~~~~~~~~~l~~~~~~~~~i~aic~g~~~La~a 111 (185)
T cd03136 63 PPLDYLFVVGGLGAR--RAVTPALLAWLRRAARRGVALGGIDTGAFLLARA 111 (185)
T ss_pred CCCCEEEEeCCCCcc--ccCCHHHHHHHHHHHhcCCEEEEEcHHHHHHHHc
Confidence 579999997776543 2222334555655 2589999999999999985
|
A subgroup of AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to the Pseudomonas aeruginosa ArgR regulator. ArgR functions in the control of expression of certain genes of arginine biosynthesis and catabolism. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in some sequences in the sharp turn betwee |
| >cd03139 GATase1_PfpI_2 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus | Back alignment and domain information |
|---|
Probab=87.17 E-value=1.2 Score=39.84 Aligned_cols=48 Identities=19% Similarity=0.241 Sum_probs=34.4
Q ss_pred CCcCEEEECCCCCCCCCCCchhHHHHHHHH--cCCCCEEEEcHHHHHHHHH
Q 046651 53 NAFDNIVISPGPGSPACPEDIGICLRVLLE--CWDVPILGVCLGHQALGFV 101 (392)
Q Consensus 53 ~~fDgIVISpGPGsp~~~~d~gi~~~ll~~--~~~iPILGVCLGhQ~La~a 101 (392)
..||.|||.||++... ...-....++|++ ....+|.++|-|--+|+.+
T Consensus 61 ~~~D~lvipgg~~~~~-~~~~~~~~~~l~~~~~~~k~i~aic~g~~~La~a 110 (183)
T cd03139 61 PDLDVLLVPGGGGTRA-LVNDPALLDFIRRQAARAKYVTSVCTGALLLAAA 110 (183)
T ss_pred CCCCEEEECCCcchhh-hccCHHHHHHHHHhcccCCEEEEEchHHHHHHhc
Confidence 4799999987765322 2222345667766 3588999999999998885
|
Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. |
| >PRK11249 katE hydroperoxidase II; Provisional | Back alignment and domain information |
|---|
Probab=86.54 E-value=1.2 Score=49.97 Aligned_cols=97 Identities=18% Similarity=0.087 Sum_probs=56.4
Q ss_pred ccEEEEEECCCCch---HHHHHHHHHhCCCCeEEEeCCCCCHH-------HHHhhhcc--cCCcCEEEECCCCCCCCCCC
Q 046651 4 FVRTLLIDNYDSYT---YNIYQELSTINGVPPVVVRNDEWTWR-------DICRYLYE--ENAFDNIVISPGPGSPACPE 71 (392)
Q Consensus 4 ~~r~LlIDnyDSyT---~nl~q~L~~v~G~~pvVV~nd~~~~e-------el~~~l~e--~~~fDgIVISpGPGsp~~~~ 71 (392)
.+||+||-..+... ..+.+.|.. .|+.+.+|....-... .+...+-+ ...||+|||.+|+..+....
T Consensus 597 gRKIaILVaDG~d~~ev~~~~daL~~-AGa~V~VVSp~~G~V~~s~G~~I~aD~t~~~~~Sv~FDAVvVPGG~~~~~~L~ 675 (752)
T PRK11249 597 GRKVAILLNDGVDAADLLAILKALKA-KGVHAKLLYPRMGEVTADDGTVLPIAATFAGAPSLTFDAVIVPGGKANIADLA 675 (752)
T ss_pred ccEEEEEecCCCCHHHHHHHHHHHHH-CCCEEEEEECCCCeEECCCCCEEecceeeccCCccCCCEEEECCCchhHHHHh
Confidence 36776664422222 245566665 6888877754321000 01111101 12599999977765554333
Q ss_pred chhHHHHHHHH--cCCCCEEEEcHHHHHHHHH
Q 046651 72 DIGICLRVLLE--CWDVPILGVCLGHQALGFV 101 (392)
Q Consensus 72 d~gi~~~ll~~--~~~iPILGVCLGhQ~La~a 101 (392)
+-+-...+|++ ...++|..||-|-++|+.+
T Consensus 676 ~d~~al~fL~eaykHgK~IAAiCaG~~LLaaA 707 (752)
T PRK11249 676 DNGDARYYLLEAYKHLKPIALAGDARKLKAAL 707 (752)
T ss_pred hCHHHHHHHHHHHHcCCEEEEeCccHHHHHhc
Confidence 33445666666 3588999999999999974
|
|
| >PF13278 DUF4066: Putative amidotransferase; PDB: 3BHN_A 3MGK_B 3NOV_A 3NON_B 3NOO_B 3NOQ_A 3NOR_A 3GRA_A 3EWN_A 3ER6_C | Back alignment and domain information |
|---|
Probab=86.33 E-value=0.64 Score=41.31 Aligned_cols=48 Identities=29% Similarity=0.404 Sum_probs=32.9
Q ss_pred CCcCEEEECCCCCCCCCCCchhHHHHHHHH--cCCCCEEEEcHHHHHHHHH
Q 046651 53 NAFDNIVISPGPGSPACPEDIGICLRVLLE--CWDVPILGVCLGHQALGFV 101 (392)
Q Consensus 53 ~~fDgIVISpGPGsp~~~~d~gi~~~ll~~--~~~iPILGVCLGhQ~La~a 101 (392)
..+|.|||.||++......+ ....+.|++ ..+.+|.++|-|-.+|+.+
T Consensus 60 ~~~D~lvvpg~~~~~~~~~~-~~l~~~l~~~~~~~~~i~aic~G~~~La~a 109 (166)
T PF13278_consen 60 PDFDILVVPGGPGFDAAAKD-PALLDWLRQQHAQGTYIAAICTGALLLAEA 109 (166)
T ss_dssp SCCSEEEEE-STTHHHHTT--HHHHHHHHHHHCCTSEEEEETTHHHHHHHT
T ss_pred ccCCEEEeCCCCCchhcccC-HHHHHHhhhhhccceEEeeeehHHHHHhhh
Confidence 67999999888771111222 234455544 3589999999999999997
|
... |
| >PF06283 ThuA: Trehalose utilisation; PDB: 4E5V_A 1T0B_A | Back alignment and domain information |
|---|
Probab=83.57 E-value=6.4 Score=36.75 Aligned_cols=143 Identities=15% Similarity=0.155 Sum_probs=67.4
Q ss_pred EEEEEECC------CCc--hHH-HHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHH
Q 046651 6 RTLLIDNY------DSY--TYN-IYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGIC 76 (392)
Q Consensus 6 r~LlIDny------DSy--T~n-l~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~ 76 (392)
|||||.-. +++ ... |.+++++-.|+++++..+ ...+.+ ..| ..||.||+.-..+..-..+....+
T Consensus 1 kvLi~~g~~~~~~h~~~~~~~~~l~~ll~~~~~~~v~~~~~-~~~~~~--~~L---~~~Dvvv~~~~~~~~l~~~~~~al 74 (217)
T PF06283_consen 1 KVLIFSGGWSGYRHDSIPAAKKALAQLLEESEGFEVTVTED-PDDLTP--ENL---KGYDVVVFYNTGGDELTDEQRAAL 74 (217)
T ss_dssp EEEEEES-SHHHCSHHHHHHHHHHHHHHHHTTCEEEEECCS-GGCTSH--HCH---CT-SEEEEE-SSCCGS-HHHHHHH
T ss_pred CEEEEeCCcCCccCccHHHHHHHHHHHhccCCCEEEEEEeC-cccCCh--hHh---cCCCEEEEECCCCCcCCHHHHHHH
Confidence 68888654 111 112 334444345666654433 222222 112 689999997665432111112222
Q ss_pred HHHHHHcCCCCEEEEcHHH-------HHHHHHhCCeeeecCCCceeceeEEEecCCcccccCCCCCCcceEEE--eeecc
Q 046651 77 LRVLLECWDVPILGVCLGH-------QALGFVHGADIVHAPEPVHGRLSEIVHNGDRLFHDIPSGQNSGFKVV--RYHSL 147 (392)
Q Consensus 77 ~~ll~~~~~iPILGVCLGh-------Q~La~a~Gg~V~~apep~hG~~s~i~h~g~~LF~~ips~~~s~f~Vv--ryHSl 147 (392)
.+.++ ++.+++|+.-+. .......||....-|....... .+...++++.+++|.. |.+. .|...
T Consensus 75 ~~~v~--~Ggglv~lH~~~~~~~~~~~~~~~l~Gg~f~~h~~~~~~~v-~~~~~~HPi~~gl~~~----f~~~DE~Y~~~ 147 (217)
T PF06283_consen 75 RDYVE--NGGGLVGLHGAATDSFPDWPEYNELLGGYFKGHPPPQPFTV-RVEDPDHPITRGLPES----FTIYDEWYYFL 147 (217)
T ss_dssp HHHHH--TT-EEEEEGGGGGCCHTT-HHHHHHHS--SEEEECEEEEEE-EESSTTSCCCTTS-SE----EEEEEEEEES-
T ss_pred HHHHH--cCCCEEEEcccccccchhHHHHHHeeCccccCCCCCceEEE-EEcCCCChhhcCCCCC----ceEcccccccc
Confidence 33333 489999998332 2345567775544331111111 1334679999999877 7774 23322
Q ss_pred eeecCCCCCCcEEEEEec
Q 046651 148 IIDADSLPKELIPIAWSN 165 (392)
Q Consensus 148 ~V~~~sLP~~l~~iAwt~ 165 (392)
. . ..+...+|+...
T Consensus 148 ~-~---~~~~~~vL~~~~ 161 (217)
T PF06283_consen 148 R-D---PRPNVTVLLTAD 161 (217)
T ss_dssp B-S------CEEEEEEEE
T ss_pred c-C---CCCCEEEEEEEE
Confidence 2 1 223578888776
|
|
| >PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1 | Back alignment and domain information |
|---|
Probab=82.99 E-value=1.9 Score=37.48 Aligned_cols=83 Identities=18% Similarity=0.291 Sum_probs=51.6
Q ss_pred cEEEEEECC---CCchHHHHHHHHHhC---CCCeEEEeCCCC-----------------CHHHHHhhhcccCCcCEEEEC
Q 046651 5 VRTLLIDNY---DSYTYNIYQELSTIN---GVPPVVVRNDEW-----------------TWRDICRYLYEENAFDNIVIS 61 (392)
Q Consensus 5 ~r~LlIDny---DSyT~nl~q~L~~v~---G~~pvVV~nd~~-----------------~~eel~~~l~e~~~fDgIVIS 61 (392)
||||+|.-- +|.|..+.+++.+.. |+++.++.-.+. .++++...| .+.|+||+
T Consensus 1 Mkilii~gS~r~~~~t~~l~~~~~~~l~~~g~e~~~i~l~~~~~p~~~~~~~~~~~~~d~~~~~~~~l---~~aD~iI~- 76 (152)
T PF03358_consen 1 MKILIINGSPRKNSNTRKLAEAVAEQLEEAGAEVEVIDLADYPLPCCDGDFECPCYIPDDVQELYDKL---KEADGIIF- 76 (152)
T ss_dssp -EEEEEESSSSTTSHHHHHHHHHHHHHHHTTEEEEEEECTTSHCHHHHHHHHHTGCTSHHHHHHHHHH---HHSSEEEE-
T ss_pred CEEEEEECcCCCCCHHHHHHHHHHHHHHHcCCEEEEEeccccchhhcccccccccCCcHHHHHHHhce---ecCCeEEE-
Confidence 899999653 478888888887764 888888866552 123444444 57899999
Q ss_pred CCCCCCCCCCc----hhHHHHHHH-----HcCCCCEEEEcHH
Q 046651 62 PGPGSPACPED----IGICLRVLL-----ECWDVPILGVCLG 94 (392)
Q Consensus 62 pGPGsp~~~~d----~gi~~~ll~-----~~~~iPILGVCLG 94 (392)
++|.-... .....+.+. ...++|++.|+-|
T Consensus 77 ---~sP~y~~~~s~~lK~~lD~~~~~~~~~~~~K~~~~i~~~ 115 (152)
T PF03358_consen 77 ---ASPVYNGSVSGQLKNFLDRLSCWFRRALRGKPVAIIAVG 115 (152)
T ss_dssp ---EEEEBTTBE-HHHHHHHHTHHHTHTTTTTTSEEEEEEEE
T ss_pred ---eecEEcCcCChhhhHHHHHhccccccccCCCEEEEEEEe
Confidence 56643222 222223332 1358898888643
|
5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction |
| >COG4090 Uncharacterized protein conserved in archaea [Function unknown] | Back alignment and domain information |
|---|
Probab=82.94 E-value=2.5 Score=37.87 Aligned_cols=47 Identities=21% Similarity=0.212 Sum_probs=35.9
Q ss_pred CCcCEEEECCCCCCCCCCCchhHHHHHHHHcCCCCEEEEcHHHHHHHHH
Q 046651 53 NAFDNIVISPGPGSPACPEDIGICLRVLLECWDVPILGVCLGHQALGFV 101 (392)
Q Consensus 53 ~~fDgIVISpGPGsp~~~~d~gi~~~ll~~~~~iPILGVCLGhQ~La~a 101 (392)
...|.||+-||=.-|.-..+..-..+++.+.+..|+.|||+ |.|.+-
T Consensus 84 n~aDvvVLlGGLaMP~~gv~~d~~kel~ee~~~kkliGvCf--m~mF~r 130 (154)
T COG4090 84 NSADVVVLLGGLAMPKIGVTPDDAKELLEELGNKKLIGVCF--MNMFER 130 (154)
T ss_pred ccccEEEEEcccccCcCCCCHHHHHHHHHhcCCCceEEeeH--HHHHHH
Confidence 45899999999888876556655678888877789999994 555544
|
|
| >PF09825 BPL_N: Biotin-protein ligase, N terminal; InterPro: IPR019197 The function of this structural domain is unknown | Back alignment and domain information |
|---|
Probab=82.67 E-value=3.3 Score=42.79 Aligned_cols=86 Identities=15% Similarity=0.203 Sum_probs=49.9
Q ss_pred cEEEEEECCCCchH---HHHHHHHHhCCCCeEEEeCCCCCHHHHHh--hhcccCCcCEEEECCCCCCCCCCCchhHHHHH
Q 046651 5 VRTLLIDNYDSYTY---NIYQELSTINGVPPVVVRNDEWTWRDICR--YLYEENAFDNIVISPGPGSPACPEDIGICLRV 79 (392)
Q Consensus 5 ~r~LlIDnyDSyT~---nl~q~L~~v~G~~pvVV~nd~~~~eel~~--~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~l 79 (392)
|+|||..--..-+. .....|++.+.-...|..-+. ++|.. |. ..++.+|+.||...|++..--+.-.+.
T Consensus 1 mnVlVY~G~G~~~~sv~~~~~~Lr~~l~p~y~V~~v~~---~~l~~~pw~---~~~~LlV~PGG~d~~y~~~l~~~g~~~ 74 (367)
T PF09825_consen 1 MNVLVYNGPGTSPESVRHTLESLRRLLSPHYAVIPVTA---DELLNEPWQ---SKCALLVMPGGADLPYCRSLNGEGNRR 74 (367)
T ss_pred CeEEEEecCCCCHHHHHHHHHHHHHhcCCCeEEEEeCH---HHhhcCccc---cCCcEEEECCCcchHHHHhhChHHHHH
Confidence 78888865544443 344555554443344443332 33322 22 568999998888888773322222344
Q ss_pred HHH--cCCCCEEEEcHHHH
Q 046651 80 LLE--CWDVPILGVCLGHQ 96 (392)
Q Consensus 80 l~~--~~~iPILGVCLGhQ 96 (392)
|++ ..+--.||||.|.-
T Consensus 75 Ir~fV~~GG~YlGiCAGaY 93 (367)
T PF09825_consen 75 IRQFVENGGGYLGICAGAY 93 (367)
T ss_pred HHHHHHcCCcEEEECcchh
Confidence 444 24888999999944
|
It is found to the N terminus of the biotin protein ligase catalytic domain []. Biotin protein ligase carries out the post-translational modification of specific proteins by the attachment of biotin. It acts on various carboxylases such as acetyl-CoA-carboxylase, pyruvate carboxylase, propionyl CoA carboxylase, and 3-methylcrotonyl CoA carboxylase. |
| >PF06490 FleQ: Flagellar regulatory protein FleQ; InterPro: IPR010518 This domain is found at the N terminus of a subset of sigma54-dependent transcriptional activators that are involved in regulation of flagellar motility e | Back alignment and domain information |
|---|
Probab=82.27 E-value=1.7 Score=36.87 Aligned_cols=75 Identities=16% Similarity=0.198 Sum_probs=47.7
Q ss_pred EEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHHcCC
Q 046651 6 RTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLECWD 85 (392)
Q Consensus 6 r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~~~~ 85 (392)
||||||+-..-..+|--.|.. .|..++++..+++ ..... ....++++|.-|... .-......++.....
T Consensus 1 kILvIddd~~R~~~L~~ILeF-lGe~~~~~~~~~~--~~~~~----~~~~~~~~v~~g~~~----~~~~~l~~l~~~~~~ 69 (109)
T PF06490_consen 1 KILVIDDDAERRQRLSTILEF-LGEQCEAVSSSDW--SQADW----SSPWEACAVILGSCS----KLAELLKELLKWAPH 69 (109)
T ss_pred CEEEECCcHHHHHhhhhhhhh-cCCCeEEecHHHH--HHhhh----hcCCcEEEEEecCch----hHHHHHHHHHhhCCC
Confidence 699999855555666666665 7999999987664 22211 156788877655443 222334555555678
Q ss_pred CCEEEE
Q 046651 86 VPILGV 91 (392)
Q Consensus 86 iPILGV 91 (392)
+|+|=+
T Consensus 70 ~Pvlll 75 (109)
T PF06490_consen 70 IPVLLL 75 (109)
T ss_pred CCEEEE
Confidence 998744
|
g. FleQ in Pseudomonas aeruginosa. It is clearly related to IPR001789 from INTERPRO, but lacks the conserved aspartate residue that undergoes phosphorylation in the classic two-component system response regulator (IPR001789 from INTERPRO). |
| >PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional | Back alignment and domain information |
|---|
Probab=81.90 E-value=3.5 Score=41.16 Aligned_cols=78 Identities=19% Similarity=0.280 Sum_probs=44.9
Q ss_pred cEEEEEECCCC-ch----HHHHHHHHHhCCCCeEEEeCCCCCHH-------------HHHhhhcccCCcCEEEECCCCCC
Q 046651 5 VRTLLIDNYDS-YT----YNIYQELSTINGVPPVVVRNDEWTWR-------------DICRYLYEENAFDNIVISPGPGS 66 (392)
Q Consensus 5 ~r~LlIDnyDS-yT----~nl~q~L~~v~G~~pvVV~nd~~~~e-------------el~~~l~e~~~fDgIVISpGPGs 66 (392)
|+++||-|.+. -. ..|...|.+ .|..+.+-........ +... + ...+|.||.-||-|+
T Consensus 1 m~igii~~~~~~~~~~~~~~i~~~l~~-~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~dlvi~lGGDGT 76 (292)
T PRK01911 1 MKIAIFGQTYQESASPYIQELFDELEE-RGAEVLIEEKFLDFLKQDLKFHPSYDTFSDNEE-L--DGSADMVISIGGDGT 76 (292)
T ss_pred CEEEEEeCCCCHHHHHHHHHHHHHHHH-CCCEEEEecchhhhhccccccccccccccchhh-c--ccCCCEEEEECCcHH
Confidence 89999988644 22 334455544 5777755332100000 0011 1 035799999999886
Q ss_pred CCCCCchhHHHHHHHH--cCCCCEEEEcHHH
Q 046651 67 PACPEDIGICLRVLLE--CWDVPILGVCLGH 95 (392)
Q Consensus 67 p~~~~d~gi~~~ll~~--~~~iPILGVCLGh 95 (392)
. ++..+. ..++|||||=+|.
T Consensus 77 ~---------L~aa~~~~~~~~PilGIN~G~ 98 (292)
T PRK01911 77 F---------LRTATYVGNSNIPILGINTGR 98 (292)
T ss_pred H---------HHHHHHhcCCCCCEEEEecCC
Confidence 3 334433 2389999999986
|
|
| >COG4126 Hydantoin racemase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=81.50 E-value=13 Score=35.96 Aligned_cols=94 Identities=21% Similarity=0.343 Sum_probs=57.0
Q ss_pred cEEEEEECCC--CchHHHHHHHHHhCCCCeEEEeCCC----C-CH----H------HHHhhhc--ccCCcCEEEECCCCC
Q 046651 5 VRTLLIDNYD--SYTYNIYQELSTINGVPPVVVRNDE----W-TW----R------DICRYLY--EENAFDNIVISPGPG 65 (392)
Q Consensus 5 ~r~LlIDnyD--SyT~nl~q~L~~v~G~~pvVV~nd~----~-~~----e------el~~~l~--e~~~fDgIVISpGPG 65 (392)
|+||+|.-.. +.|..+...+..+.+..+.++.... + .. + .+...+- ++..+|+|||+
T Consensus 1 ~~IlvINPNsT~smTe~~~~~a~~v~~~~~~l~~~t~~~~~p~~Ieg~~de~~a~~~~l~ei~~~~~~GvdaiiIa---- 76 (230)
T COG4126 1 MRILVINPNSTASMTESMGETARKVASADTELISVTSPRDGPASIEGQEDEALAAPGLLREIADGEEQGVDAIIIA---- 76 (230)
T ss_pred CeEEEECCCchHHHHHHHHHHHHhhcCCCceEEEEccCCCCCccccCcchHHHhhhHHHHHhhcccccCCcEEEEE----
Confidence 6888886543 3566777777666655554432211 0 00 1 1111111 33459999995
Q ss_pred CCCCCCchhHHHHHHHHcCCCCEEEEcHHHHHHHHHhCCeee
Q 046651 66 SPACPEDIGICLRVLLECWDVPILGVCLGHQALGFVHGADIV 107 (392)
Q Consensus 66 sp~~~~d~gi~~~ll~~~~~iPILGVCLGhQ~La~a~Gg~V~ 107 (392)
|..|.+ ...+++.-.+|+.|||----..|...|-++.
T Consensus 77 ---Cf~DPg--l~~~Re~~~~PviGi~eAsv~~A~~vgrrfs 113 (230)
T COG4126 77 ---CFSDPG--LAAARERAAIPVIGICEASVLAALFVGRRFS 113 (230)
T ss_pred ---ecCChH--HHHHHHHhCCCceehhHHHHHHHHHhcceEE
Confidence 556643 5667774499999999998888887766553
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 392 | ||||
| 1qdl_B | 195 | The Crystal Structure Of Anthranilate Synthase From | 1e-29 | ||
| 1i7q_B | 193 | Anthranilate Synthase From S. Marcescens Length = 1 | 2e-17 | ||
| 1i1q_B | 192 | Structure Of The Cooperative Allosteric Anthranilat | 8e-15 | ||
| 2a9v_A | 212 | Crystal Structure Of A Putative Gmp Synthase Subuni | 7e-08 | ||
| 1t36_B | 382 | Crystal Structure Of E. Coli Carbamoyl Phosphate Sy | 8e-07 | ||
| 3r74_A | 645 | Crystal Structure Of 2-Amino-2-Desoxyisochorismate | 2e-06 | ||
| 1m6v_B | 382 | Crystal Structure Of The G359f (Small Subunit) Poin | 4e-06 | ||
| 1jdb_C | 382 | Carbamoyl Phosphate Synthetase From Escherichia Col | 4e-06 | ||
| 1wl8_A | 189 | Crystal Structure Of Ph1346 Protein From Pyrococcus | 9e-06 | ||
| 2d7j_A | 209 | Crystal Structure Analysis Of Glutamine Amidotransf | 2e-05 | ||
| 3r75_A | 645 | Crystal Structure Of 2-Amino-2-Desoxyisochorismate | 4e-05 | ||
| 1c30_B | 382 | Crystal Structure Of Carbamoyl Phosphate Synthetase | 5e-05 | ||
| 1a9x_B | 379 | Carbamoyl Phosphate Synthetase: Caught In The Act O | 7e-05 | ||
| 1cs0_B | 382 | Crystal Structure Of Carbamoyl Phosphate Synthetase | 7e-05 |
| >pdb|1QDL|B Chain B, The Crystal Structure Of Anthranilate Synthase From Sulfolobus Solfataricus Length = 195 | Back alignment and structure |
|
| >pdb|1I7Q|B Chain B, Anthranilate Synthase From S. Marcescens Length = 193 | Back alignment and structure |
|
| >pdb|1I1Q|B Chain B, Structure Of The Cooperative Allosteric Anthranilate Synthase From Salmonella Typhimurium Length = 192 | Back alignment and structure |
|
| >pdb|2A9V|A Chain A, Crystal Structure Of A Putative Gmp Synthase Subunit A Protein (Ta0944m) From Thermoplasma Acidophilum At 2.45 A Resolution Length = 212 | Back alignment and structure |
|
| >pdb|1T36|B Chain B, Crystal Structure Of E. Coli Carbamoyl Phosphate Synthetase Small Subunit Mutant C248d Complexed With Uridine 5'-Monophosphate Length = 382 | Back alignment and structure |
|
| >pdb|3R74|A Chain A, Crystal Structure Of 2-Amino-2-Desoxyisochorismate Synthase (Adic) Synthase Phze From Burkholderia Lata 383 Length = 645 | Back alignment and structure |
|
| >pdb|1M6V|B Chain B, Crystal Structure Of The G359f (Small Subunit) Point Mutant Of Carbamoyl Phosphate Synthetase Length = 382 | Back alignment and structure |
|
| >pdb|1JDB|C Chain C, Carbamoyl Phosphate Synthetase From Escherichia Coli Length = 382 | Back alignment and structure |
|
| >pdb|1WL8|A Chain A, Crystal Structure Of Ph1346 Protein From Pyrococcus Horikoshii Length = 189 | Back alignment and structure |
|
| >pdb|2D7J|A Chain A, Crystal Structure Analysis Of Glutamine Amidotransferase From Pyrococcus Horikoshii Ot3 Length = 209 | Back alignment and structure |
|
| >pdb|3R75|A Chain A, Crystal Structure Of 2-Amino-2-Desoxyisochorismate Synthase (Adic) Synthase Phze From Burkholderia Lata 383 In Complex With Benzoate, Pyruvate, Glutamine And Contaminating Zn2+ Length = 645 | Back alignment and structure |
|
| >pdb|1C30|B Chain B, Crystal Structure Of Carbamoyl Phosphate Synthetase: Small Subunit Mutation C269s Length = 382 | Back alignment and structure |
|
| >pdb|1A9X|B Chain B, Carbamoyl Phosphate Synthetase: Caught In The Act Of Glutamine Hydrolysis Length = 379 | Back alignment and structure |
|
| >pdb|1CS0|B Chain B, Crystal Structure Of Carbamoyl Phosphate Synthetase Complexed At Cys269 In The Small Subunit With The Tetrahedral Mimic L-glutamate Gamma-semialdehyde Length = 382 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 392 | |||
| 1qdl_B | 195 | Protein (anthranilate synthase (TRPG-SUBUNIT)); tr | 2e-78 | |
| 1i1q_B | 192 | Anthranilate synthase component II; tryptophan bio | 2e-71 | |
| 3r75_A | 645 | Anthranilate/para-aminobenzoate synthases compone; | 6e-27 | |
| 1l9x_A | 315 | Gamma-glutamyl hydrolase; 1.60A {Homo sapiens} SCO | 3e-18 | |
| 3uow_A | 556 | GMP synthetase; structural genomics consortium, SG | 2e-10 | |
| 1wl8_A | 189 | GMP synthase [glutamine-hydrolyzing] subunit A; tr | 2e-10 | |
| 1gpm_A | 525 | GMP synthetase, XMP aminase; class I glutamine ami | 1e-08 | |
| 1o1y_A | 239 | Conserved hypothetical protein TM1158; flavodoxin- | 8e-08 | |
| 2a9v_A | 212 | GMP synthase; structural genomics, joint center fo | 8e-08 | |
| 2a9v_A | 212 | GMP synthase; structural genomics, joint center fo | 2e-05 | |
| 3l7n_A | 236 | Putative uncharacterized protein; glutamine amidot | 3e-07 | |
| 1a9x_B | 379 | Carbamoyl phosphate synthetase (small chain); amid | 4e-07 | |
| 2vpi_A | 218 | GMP synthase; guanine monophosphate synthetase, ph | 7e-07 | |
| 2vpi_A | 218 | GMP synthase; guanine monophosphate synthetase, ph | 2e-05 | |
| 2ywb_A | 503 | GMP synthase [glutamine-hydrolyzing]; GMP syntheta | 2e-06 | |
| 2ywb_A | 503 | GMP synthase [glutamine-hydrolyzing]; GMP syntheta | 4e-05 | |
| 2vxo_A | 697 | GMP synthase [glutamine-hydrolyzing]; proto-oncoge | 2e-06 | |
| 2vxo_A | 697 | GMP synthase [glutamine-hydrolyzing]; proto-oncoge | 8e-06 | |
| 3tqi_A | 527 | GMP synthase [glutamine-hydrolyzing]; ligase; 2.84 | 2e-06 | |
| 3tqi_A | 527 | GMP synthase [glutamine-hydrolyzing]; ligase; 2.84 | 3e-05 | |
| 3m3p_A | 250 | Glutamine amido transferase; structural genomics, | 6e-06 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 5e-05 | |
| 2vdj_A | 301 | Homoserine O-succinyltransferase; methionine biosy | 4e-04 |
| >1qdl_B Protein (anthranilate synthase (TRPG-SUBUNIT)); tryptophan biosynthesis, glutamine amidotransferase, allosteric interaction, lyase; 2.50A {Sulfolobus solfataricus} SCOP: c.23.16.1 Length = 195 | Back alignment and structure |
|---|
Score = 239 bits (612), Expect = 2e-78
Identities = 88/250 (35%), Positives = 117/250 (46%), Gaps = 67/250 (26%)
Query: 8 LLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSP 67
L+IDNYDS+ YNI Q + + G P+V+RNDE + + I E D ++ISPGPG+P
Sbjct: 5 LIIDNYDSFVYNIAQIVGEL-GSYPIVIRNDEISIKGI-----ERIDPDRLIISPGPGTP 58
Query: 68 ACPEDIGICLRVLLECWD-VPILGVCLGHQALGFVHGADIVHAPEPVHGRLSEIV---HN 123
EDIG+ L V+ PILGVCLGHQA+G+ GA I A + HG++S I+ ++
Sbjct: 59 EKREDIGVSLDVIKYLGKRTPILGVCLGHQAIGYAFGAKIRRARKVFHGKISNIILVNNS 118
Query: 124 GDRLFHDIPSGQNSGFKVVRYHSLIIDADSLPKELIPIAWSNSADGFSYLGTLQSGEIPD 183
L++ I FK RYHSL++D P + I+ + EI
Sbjct: 119 PLSLYYGIA----KEFKATRYHSLVVDEVHRPLIVDAISAED-------------NEI-- 159
Query: 184 AYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGIMHSTRPHYGVQFHPESIAT 243
M I H P YGVQFHPES+ T
Sbjct: 160 --------------------------------------MAIHHEEYPIYGVQFHPESVGT 181
Query: 244 CYGSKILRNF 253
G KIL NF
Sbjct: 182 SLGYKILYNF 191
|
| >1i1q_B Anthranilate synthase component II; tryptophan biosynthesis, lyase; HET: TRP; 1.90A {Salmonella typhimurium} SCOP: c.23.16.1 PDB: 1i7q_B 1i7s_B* Length = 192 | Back alignment and structure |
|---|
Score = 220 bits (564), Expect = 2e-71
Identities = 64/256 (25%), Positives = 99/256 (38%), Gaps = 72/256 (28%)
Query: 8 LLIDNYDSYTYNIYQELSTINGVPPVVVRND---EWTWRDICRYLYEENAFDNIVISPGP 64
LL+DN DS+T+N+ +L T G V+ RN + + +++SPGP
Sbjct: 4 LLLDNIDSFTWNLADQLRTN-GHNVVIYRNHIPAQTLIDRL-----ATMKNPVLMLSPGP 57
Query: 65 GSPACPEDIGICLRVLLECWD-VPILGVCLGHQALGFVHGADIVHAPEPVHGRLSEIVHN 123
G P + G +L +PI+G+CLGHQA+ +G + A E +HG+ + I H+
Sbjct: 58 GVP---SEAGCMPELLTRLRGKLPIIGICLGHQAIVEAYGGYVGQAGEILHGKATSIEHD 114
Query: 124 GDRLFHDIPSGQNSGFKVVRYHSLIIDADSLPKELIPIAWSNSADGFSYLGTLQSGEIPD 183
G +F + + V RYHSL+ ++P L A N G +
Sbjct: 115 GQAMFAGLA----NPLPVARYHSLVG--SNVPAGLTINAHFN-------------GMV-- 153
Query: 184 AYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGIMHSTRPHYGVQFHPESIAT 243
M + H G QFHPESI T
Sbjct: 154 --------------------------------------MAVRHDADRVCGFQFHPESILT 175
Query: 244 CYGSKILRNFREITED 259
G+++L +
Sbjct: 176 TQGARLLEQTLAWAQQ 191
|
| >3r75_A Anthranilate/para-aminobenzoate synthases compone; ammonia channel, chorismate, type 1 glutamine amidotransfera phenazine biosynthesis, lyase; HET: CYG; 2.10A {Burkholderia SP} PDB: 3r74_A* 3r76_A* Length = 645 | Back alignment and structure |
|---|
Score = 111 bits (280), Expect = 6e-27
Identities = 50/252 (19%), Positives = 79/252 (31%), Gaps = 74/252 (29%)
Query: 6 RTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPG 65
R L++D D +T I Q+LS++ G+ V + + +D +V+ PGPG
Sbjct: 448 RALIVDAEDHFTAMIAQQLSSL-GLATEVCGVHDA---------VDLARYDVVVMGPGPG 497
Query: 66 SPACPEDIGIC-LRVL---LECWDVPILGVCLGHQALGFVHGADIVHAPEPVHGRLSEIV 121
P+ D I L L P + VCL HQ L + G +V P G EI
Sbjct: 498 DPSDAGDPRIARLYAWLRHLIDEGKPFMAVCLSHQILNAILGIPLVRREVPNQGIQVEID 557
Query: 122 HNGDRLFHDIPSGQNSGFKVVRYHSLIIDADSLPKELIPIAWSNSADGFSYLGTLQSGEI 181
G R V Y++ + + + + ++GE+
Sbjct: 558 LFGQRER------------VGFYNTYVAQTVRDEMD------VDGVGTVAISRDPRTGEV 599
Query: 182 PDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGIMHSTRPHYGVQFHPESI 241
+ +QFH ES+
Sbjct: 600 ----------------------------------------HALRG--PTFSSMQFHAESV 617
Query: 242 ATCYGSKILRNF 253
T G +IL
Sbjct: 618 LTVDGPRILGEA 629
|
| >1l9x_A Gamma-glutamyl hydrolase; 1.60A {Homo sapiens} SCOP: c.23.16.1 Length = 315 | Back alignment and structure |
|---|
Score = 84.0 bits (207), Expect = 3e-18
Identities = 40/265 (15%), Positives = 66/265 (24%), Gaps = 66/265 (24%)
Query: 29 GVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLECW---- 84
G V VR D + N ++ PG D ++
Sbjct: 65 GARVVPVRLDL-----TEKDYEILFKSINGILFPGGSVDLRRSDYAKVAKIFYNLSIQSF 119
Query: 85 ----DVPILGVCLGHQALGFVHGADIVHAPEPVHGRLSEIVHNGD----RLFHDIPSGQN 136
P+ G CLG + L + + + + G R+F + P+
Sbjct: 120 DDGDYFPVWGTCLGFEELSLLISGECLLTATDTVDVAMPLNFTGGQLHSRMFQNFPTELL 179
Query: 137 SGFK----VVRYHSLIIDADSLPKELIPIAWSNSADGFSYLGTLQSGEIPDAYQSQSRQK 192
+H + + F+ L T G+I
Sbjct: 180 LSLAVEPLTANFHKWSLSVKNFTM------NEKLKKFFNVLTTNTDGKI----------- 222
Query: 193 ILLSDISTQIKNGSYRHSIYSNRMRREVLMGIMHSTRPHYGVQFHPESIATCYGSKILRN 252
E + + P YGVQ+HPE + + +
Sbjct: 223 --------------------------EFISTMEGYKYPVYGVQWHPEKAPYEWKNLDGIS 256
Query: 253 FREITEDYWKRLRSPFVKE--RNVH 275
L FV E +N H
Sbjct: 257 HAPNAVKTAFYLAEFFVNEARKNNH 281
|
| >3uow_A GMP synthetase; structural genomics consortium, SGC, purine nucleotide biosy process, ligase; HET: XMP; 2.72A {Plasmodium falciparum} Length = 556 | Back alignment and structure |
|---|
Score = 61.5 bits (150), Expect = 2e-10
Identities = 30/216 (13%), Positives = 55/216 (25%), Gaps = 64/216 (29%)
Query: 58 IVISPGP------GSPACPEDIGICLRVLLECWDVPILGVCLGHQALGFVHGADIVHAPE 111
+++S GP GSP +++ +PI G+C G Q + ++ +
Sbjct: 54 VILSGGPYSVTEAGSPHLKKEV----FEYFLEKKIPIFGICYGMQEIAVQMNGEVKKSKT 109
Query: 112 PVHGRLSEIVHNGDRLFHDIPSGQNSGFKVVRYHSLIIDADSLPKEL-------IPIAW- 163
+G + D + + + L I W
Sbjct: 110 SEYGCTDVNILRNDNINNITYCRNFGDSSSAMDLYSNYKLMNETCCLFENIKSDITTVWM 169
Query: 164 ------SNSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMR 217
+ + F + + S
Sbjct: 170 NHNDEVTKIPENFYLVSS--SENCLIC--------------------------------- 194
Query: 218 REVLMGIMHSTRPHYGVQFHPESIATCYGSKILRNF 253
I + YGVQ+HPE + G + NF
Sbjct: 195 -----SIYNKEYNIYGVQYHPEVYESLDGELMFYNF 225
|
| >1wl8_A GMP synthase [glutamine-hydrolyzing] subunit A; transferase, gatases, riken structural genomics/proteomics initiative, RSGI; 1.45A {Pyrococcus horikoshii} SCOP: c.23.16.1 PDB: 2d7j_A Length = 189 | Back alignment and structure |
|---|
Score = 58.5 bits (142), Expect = 2e-10
Identities = 41/205 (20%), Positives = 65/205 (31%), Gaps = 72/205 (35%)
Query: 58 IVISPGP------GSPACPEDIGICLRVLLECWDVPILGVCLGHQALGFVHGADIVHAPE 111
I+ S GP E E ++VPILG+CLGHQ + G + +
Sbjct: 47 IIFSGGPSLENTGNCEKVLEHY-------DE-FNVPILGICLGHQLIAKFFGGKVGRGEK 98
Query: 112 PVHGRLSEIVHNGDRLFHDIPSGQNSGFKVVRYHSLIIDADSLPKELIPIAWSNSADGFS 171
+ + + + +F +P W + D
Sbjct: 99 AEYSLVEIEIIDEXEIFKGLPKRLK-------------------------VWESHMDEVK 133
Query: 172 YLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGIMHSTRPH 231
E+P ++ +R + + + H P
Sbjct: 134 --------ELPPKFKILARSE-------------------------TCPIEAMKHEELPI 160
Query: 232 YGVQFHPESIATCYGSKILRNFREI 256
YGVQFHPE T G +ILRNF ++
Sbjct: 161 YGVQFHPEVAHTEKGEEILRNFAKL 185
|
| >1gpm_A GMP synthetase, XMP aminase; class I glutamine amidotransferase, N-type ATP pyrophosphata transferase (glutamine amidotransferase); HET: AMP CIT; 2.20A {Escherichia coli} SCOP: c.23.16.1 c.26.2.1 d.52.2.1 Length = 525 | Back alignment and structure |
|---|
Score = 55.9 bits (136), Expect = 1e-08
Identities = 41/206 (19%), Positives = 61/206 (29%), Gaps = 72/206 (34%)
Query: 58 IVISPGP------GSPACPEDIGICLRVLLECWDVPILGVCLGHQALGFVHGADIVHAPE 111
I++S GP SP P+ + E VP+ GVC G Q + G + + E
Sbjct: 54 IILSGGPESTTEENSPRAPQYV-------FE-AGVPVFGVCYGMQTMAMQLGGHVEASNE 105
Query: 112 PVHGRLSEIVHNGDRLFHDIPSGQNSGFKVVRY----HSLIIDADSLPKELIPIAWSNSA 167
G V N L I + K + H D + IP
Sbjct: 106 REFGYAQVEVVNDSALVRGIEDALTADGKPLLDVWMSHG-----DKVTA--IP------- 151
Query: 168 DGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGIMHS 227
F + + +S ++ ++ Y
Sbjct: 152 SDFITVASTESCPFA-IMANEEKR-------------------FY--------------- 176
Query: 228 TRPHYGVQFHPESIATCYGSKILRNF 253
GVQFHPE T G ++L F
Sbjct: 177 -----GVQFHPEVTHTRQGMRMLERF 197
|
| >1o1y_A Conserved hypothetical protein TM1158; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG; 1.70A {Thermotoga maritima} SCOP: c.23.16.1 Length = 239 | Back alignment and structure |
|---|
Score = 51.7 bits (124), Expect = 8e-08
Identities = 27/128 (21%), Positives = 46/128 (35%), Gaps = 15/128 (11%)
Query: 53 NAFDNIVISPGPGSPACPEDIG--ICLRVLLECW---DVPILGVCLGHQALGFVHGADIV 107
+ +V+ G E L+E ++P LG+CLG Q L V GA +
Sbjct: 56 EEYSLVVLLGGYMGAYEEEKYPFLKYEFQLIEEILKKEIPFLGICLGSQMLAKVLGASVY 115
Query: 108 HAPEPVHGRLSEI-VHNGDRLFHDIPSGQNSGFKVVRYHSLIIDADSLPKELIPIAWSNS 166
+ + ++ F + P +V ++H D LP+ + S
Sbjct: 116 RGKNGEEIGWYFVEKVSDNKFFREFP----DRLRVFQWHG---DTFDLPRRATRVFTSEK 168
Query: 167 AD--GFSY 172
+ GF Y
Sbjct: 169 YENQGFVY 176
|
| >2a9v_A GMP synthase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, ligase; 2.24A {Thermoplasma acidophilum} SCOP: c.23.16.1 Length = 212 | Back alignment and structure |
|---|
Score = 51.3 bits (124), Expect = 8e-08
Identities = 19/34 (55%), Positives = 19/34 (55%)
Query: 223 GIMHSTRPHYGVQFHPESIATCYGSKILRNFREI 256
G H TRP Y QFHPE T YG I RNF I
Sbjct: 165 GFYHKTRPIYATQFHPEVEHTQYGRDIFRNFIGI 198
|
| >2a9v_A GMP synthase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, ligase; 2.24A {Thermoplasma acidophilum} SCOP: c.23.16.1 Length = 212 | Back alignment and structure |
|---|
Score = 44.4 bits (106), Expect = 2e-05
Identities = 19/97 (19%), Positives = 34/97 (35%), Gaps = 21/97 (21%)
Query: 59 VISPGPGSPACPEDIGICLRVLLECWDVPILGVCLGHQALGFVHGADIVHAPEPVHGRLS 118
+ + + I + + PILG+C+G Q + GA +V A P G+
Sbjct: 67 IDEELDKLGSVGKYI-------DD-HNYPILGICVGAQFIALHFGASVVKAKHPEFGKTK 118
Query: 119 EIVHNGDRLFHDIPSGQN-------------SGFKVV 142
V + + +F +PS F +
Sbjct: 119 VSVMHSENIFGGLPSEITVWENHNDEIINLPDDFTLA 155
|
| >3l7n_A Putative uncharacterized protein; glutamine amidotransferase, transferas; 2.70A {Streptococcus mutans} Length = 236 | Back alignment and structure |
|---|
Score = 49.8 bits (119), Expect = 3e-07
Identities = 34/143 (23%), Positives = 55/143 (38%), Gaps = 19/143 (13%)
Query: 36 RNDEWTWRDICRYLYEE-----NAFDNIVISPGPGSPACPEDIGICLRVLLECW------ 84
R + + + Y YE+ + FD +++ GP SP+ + E
Sbjct: 24 RGHDVSMTKV--YRYEKLPKDIDDFDMLILMGGPQSPSSTKKEFPYYDAQAEVKLIQKAA 81
Query: 85 --DVPILGVCLGHQALGFVHGADIVHAPEPVHGRLSEIVHNGDRLFHDIPSGQNSGFKVV 142
+ I+GVCLG Q +G +GAD +H+P+ G I S + V
Sbjct: 82 KSEKIIVGVCLGAQLMGVAYGADYLHSPKKEIGN-YLISLTEAGKMDSYLSDFSDDLLVG 140
Query: 143 RYHSLIIDADSLPKELIPIAWSN 165
+H D LP + +A S
Sbjct: 141 HWHG---DMPGLPDKAQVLAISQ 160
|
| >1a9x_B Carbamoyl phosphate synthetase (small chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: c.8.3.1 c.23.16.1 PDB: 1bxr_B* 1ce8_B* 1jdb_C* 1cs0_B* 1m6v_B* 1c30_B* 1c3o_B* 1kee_B* 1t36_B* Length = 379 | Back alignment and structure |
|---|
Score = 50.5 bits (122), Expect = 4e-07
Identities = 37/114 (32%), Positives = 46/114 (40%), Gaps = 33/114 (28%)
Query: 56 DNIVISPGPGSP-ACPEDIGICLRVLLECWDVPILGVCLGHQALGFVHGADIV------- 107
D I +S GPG P C I ++ LE D+P+ G+CLGHQ L GA V
Sbjct: 233 DGIFLSNGPGDPAPCDYAITA-IQKFLET-DIPVFGICLGHQLLALASGAKTVKMKFGHH 290
Query: 108 ---HAPEPVHGRLSEIVHNGDRLFHDIPSGQNSGFKVVRYHSLIIDADSLPKEL 158
H PV +V I + QN GF V D +LP L
Sbjct: 291 GGNH---PVKDVEKNVVM--------ITA-QNHGFAV--------DEATLPANL 324
|
| >2vpi_A GMP synthase; guanine monophosphate synthetase, phosphoprotein, GMP synthetase, GMP biosynthesis, glutamine amidotransferase, ligase, cytoplasm; 2.40A {Homo sapiens} Length = 218 | Back alignment and structure |
|---|
Score = 48.7 bits (117), Expect = 7e-07
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 223 GIMHSTRPHYGVQFHPESIATCYGSKILRNF 253
GI + ++ YG QFHPE T G IL+NF
Sbjct: 175 GIANESKKLYGAQFHPEVGLTENGKVILKNF 205
|
| >2vpi_A GMP synthase; guanine monophosphate synthetase, phosphoprotein, GMP synthetase, GMP biosynthesis, glutamine amidotransferase, ligase, cytoplasm; 2.40A {Homo sapiens} Length = 218 | Back alignment and structure |
|---|
Score = 44.5 bits (106), Expect = 2e-05
Identities = 25/104 (24%), Positives = 34/104 (32%), Gaps = 27/104 (25%)
Query: 58 IVISPGP------GSPACPEDIGICLRVLLECWDVPILGVCLGHQALGFVHGADIVHAPE 111
I+IS GP +P I P+LG+C G Q + V G +
Sbjct: 71 IIISGGPNSVYAEDAPWFDPAI-------FT-IGKPVLGICYGMQMMNKVFGGTVHKKSV 122
Query: 112 PVHGRLSEIVHNGDRLFHDIPSGQN-------------SGFKVV 142
G + V N LF + + GFKVV
Sbjct: 123 REDGVFNISVDNTCSLFRGLQKEEVVLLTHGDSVDKVADGFKVV 166
|
| >2ywb_A GMP synthase [glutamine-hydrolyzing]; GMP synthetase, XMP binding, ATP binding, purine nucleotide biosynthetic pathway, structural genomics; 2.10A {Thermus thermophilus} PDB: 2ywc_A* Length = 503 | Back alignment and structure |
|---|
Score = 49.0 bits (118), Expect = 2e-06
Identities = 16/34 (47%), Positives = 18/34 (52%)
Query: 223 GIMHSTRPHYGVQFHPESIATCYGSKILRNFREI 256
I YGVQFHPE T G +IL NF E+
Sbjct: 150 AIASPDGRAYGVQFHPEVAHTPKGMQILENFLEL 183
|
| >2ywb_A GMP synthase [glutamine-hydrolyzing]; GMP synthetase, XMP binding, ATP binding, purine nucleotide biosynthetic pathway, structural genomics; 2.10A {Thermus thermophilus} PDB: 2ywc_A* Length = 503 | Back alignment and structure |
|---|
Score = 44.4 bits (106), Expect = 4e-05
Identities = 19/104 (18%), Positives = 36/104 (34%), Gaps = 28/104 (26%)
Query: 58 IVISPGP------GSPACPEDIGICLRVLLECWDVPILGVCLGHQALGFVHGADIVHAPE 111
+++S GP +P + +P+LG+C G Q L G + A
Sbjct: 46 LILSGGPRSVFDPDAPRPDPRL-------FS-SGLPLLGICYGMQLLAQELGGRVERAGR 97
Query: 112 PVHGRLSEIVHNGDRLFHDIPSGQN-------------SGFKVV 142
+G+ + + + LF + G++VV
Sbjct: 98 AEYGK-ALLTRHEGPLFRGLEGEVQVWMSHQDAVTAPPPGWRVV 140
|
| >2vxo_A GMP synthase [glutamine-hydrolyzing]; proto-oncogene, phosphoprotein, GMP synthetase, guanine monophosphate synthetase, chromosomal rearrangement; HET: XMP; 2.5A {Homo sapiens} Length = 697 | Back alignment and structure |
|---|
Score = 48.8 bits (117), Expect = 2e-06
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 223 GIMHSTRPHYGVQFHPESIATCYGSKILRNF 253
GI + ++ YG QFHPE T G IL+NF
Sbjct: 180 GIANESKKLYGAQFHPEVGLTENGKVILKNF 210
|
| >2vxo_A GMP synthase [glutamine-hydrolyzing]; proto-oncogene, phosphoprotein, GMP synthetase, guanine monophosphate synthetase, chromosomal rearrangement; HET: XMP; 2.5A {Homo sapiens} Length = 697 | Back alignment and structure |
|---|
Score = 46.9 bits (112), Expect = 8e-06
Identities = 25/104 (24%), Positives = 34/104 (32%), Gaps = 27/104 (25%)
Query: 58 IVISPGP------GSPACPEDIGICLRVLLECWDVPILGVCLGHQALGFVHGADIVHAPE 111
I+IS GP +P I P+LG+C G Q + V G +
Sbjct: 76 IIISGGPNSVYAEDAPWFDPAI-------FTI-GKPVLGICYGMQMMNKVFGGTVHKKSV 127
Query: 112 PVHGRLSEIVHNGDRLFHDIPSGQN-------------SGFKVV 142
G + V N LF + + GFKVV
Sbjct: 128 REDGVFNISVDNTCSLFRGLQKEEVVLLTHGDSVDKVADGFKVV 171
|
| >3tqi_A GMP synthase [glutamine-hydrolyzing]; ligase; 2.84A {Coxiella burnetii} Length = 527 | Back alignment and structure |
|---|
Score = 48.6 bits (117), Expect = 2e-06
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 223 GIMHSTRPHYGVQFHPESIATCYGSKILRNF 253
+ R +G+QFHPE T G +IL +F
Sbjct: 170 AMADFKRRFFGLQFHPEVTHTPQGHRILAHF 200
|
| >3tqi_A GMP synthase [glutamine-hydrolyzing]; ligase; 2.84A {Coxiella burnetii} Length = 527 | Back alignment and structure |
|---|
Score = 44.8 bits (107), Expect = 3e-05
Identities = 20/87 (22%), Positives = 30/87 (34%), Gaps = 14/87 (16%)
Query: 58 IVISPGP------GSPACPEDIGICLRVLLECWDVPILGVCLGHQALGFVHGADIVHAPE 111
I++S GP + P I E P+LG+C G Q + + G + +
Sbjct: 57 IILSGGPETVTLSHTLRAPAFI-------FE-IGCPVLGICYGMQTMAYQLGGKVNRTAK 108
Query: 112 PVHGRLSEIVHNGDRLFHDIPSGQNSG 138
G V N LF I +
Sbjct: 109 AEFGHAQLRVLNPAFLFDGIEDQVSPQ 135
|
| >3m3p_A Glutamine amido transferase; structural genomics, nysgrc, PSI-2; HET: MSE; 1.30A {Methylobacillus flagellatus} PDB: 3l83_A* Length = 250 | Back alignment and structure |
|---|
Score = 46.3 bits (110), Expect = 6e-06
Identities = 21/123 (17%), Positives = 36/123 (29%), Gaps = 22/123 (17%)
Query: 53 NAFDNIVISPGPGSPACPED----IGICLRVLLECW---DVPILGVCLGHQALGFVHGAD 105
+ + G P D + L L+ VP++G CLG Q L G +
Sbjct: 47 RDCSGLAMM---GGPMSANDDLPWM-PTLLALIRDAVAQRVPVIGHCLGGQLLAKAMGGE 102
Query: 106 IVHAPEP---VHGRLSEIVHNGDRLFHDIPSGQNSGFKVVRYHSLIIDADSLPKELIPIA 162
+ +P + V ++ +H S+P + I
Sbjct: 103 VTDSPHAEIGWVRAWPQHVPQALEWLGTWDE-----LELFEWHY---QTFSIPPGAVHIL 154
Query: 163 WSN 165
S
Sbjct: 155 RSE 157
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 44.5 bits (104), Expect = 5e-05
Identities = 54/354 (15%), Positives = 102/354 (28%), Gaps = 96/354 (27%)
Query: 3 EFVRTLLIDNYD-------------SYTYNIYQEL--STINGVPPV----VVRNDEWTWR 43
+FV +L NY S +Y E N V R +
Sbjct: 81 KFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYL-- 138
Query: 44 DICRYLYEENAFDNIVISPGPGSPACPEDIG-ICLRVLLECWDVPI------------LG 90
+ + L E N++I GS G + L C + L
Sbjct: 139 KLRQALLELRPAKNVLIDGVLGS-------GKTWV-ALDVCLSYKVQCKMDFKIFWLNLK 190
Query: 91 VCLGHQALGFVHGADIVHAPEPVHGRLSEIVHNGDRLFHDIPSGQNSGFKVVRY-HSLII 149
C + + +++ +P S+ N H I + K Y + L++
Sbjct: 191 NCNSPETV-LEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLV 249
Query: 150 DADSLPKELIPIAWS-NSADGFSY----LGTLQSGEIPDAYQSQSRQKILLSDISTQIKN 204
+ + + + F+ L T + ++ D + + I L S
Sbjct: 250 LLN---------VQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHS----- 295
Query: 205 GSYRHSIYSNRMRREVL---MGIMHSTRPHYGVQFHPESIATCYGSKILRNFREITEDYW 261
+ + +L + P + +P ++ ++ +R+ T D W
Sbjct: 296 -----MTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSII--AESIRDGL-ATWDNW 347
Query: 262 KRLRSPFVKERNVHYTGAESLLLREITRTSRSVNNSDELGREALRPRQLFCDLG 315
K H + L I +S +V E R++F L
Sbjct: 348 K------------HVNCDK---LTTIIESSLNVLEPAEY-------RKMFDRLS 379
|
| >2vdj_A Homoserine O-succinyltransferase; methionine biosynthesis, amino-acid biosynthesis, homoserine transacetylase, homoserine transsuccinylase; 2.00A {Bacillus cereus} PDB: 2ghr_A Length = 301 | Back alignment and structure |
|---|
Score = 40.9 bits (95), Expect = 4e-04
Identities = 28/133 (21%), Positives = 43/133 (32%), Gaps = 18/133 (13%)
Query: 41 TWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLECWD------VPILGVCLG 94
T+RDI E FD ++I+ P E++ L + L +C G
Sbjct: 91 TFRDI-----ENEKFDGLIITGAPVETLSFEEVDYWEE-LKRIMEYSKTNVTSTLHICWG 144
Query: 95 HQALG-FVHGADIVHAPEPVHGRLSEIVHNGDRLFHDIPSGQNSGFKV--VRYHSLIIDA 151
QA +G E + G V + G + F R+ +
Sbjct: 145 AQAGLYHHYGVQKYPLKEKMFGVFEHEVREQH---VKLLQGFDELFFAVHSRHTEVRESD 201
Query: 152 DSLPKELIPIAWS 164
KEL +A S
Sbjct: 202 IREVKELTLLANS 214
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 392 | |||
| 1qdl_B | 195 | Protein (anthranilate synthase (TRPG-SUBUNIT)); tr | 100.0 | |
| 1i1q_B | 192 | Anthranilate synthase component II; tryptophan bio | 100.0 | |
| 2a9v_A | 212 | GMP synthase; structural genomics, joint center fo | 100.0 | |
| 1wl8_A | 189 | GMP synthase [glutamine-hydrolyzing] subunit A; tr | 100.0 | |
| 2vpi_A | 218 | GMP synthase; guanine monophosphate synthetase, ph | 100.0 | |
| 3r75_A | 645 | Anthranilate/para-aminobenzoate synthases compone; | 100.0 | |
| 2ywb_A | 503 | GMP synthase [glutamine-hydrolyzing]; GMP syntheta | 100.0 | |
| 3uow_A | 556 | GMP synthetase; structural genomics consortium, SG | 100.0 | |
| 1gpm_A | 525 | GMP synthetase, XMP aminase; class I glutamine ami | 100.0 | |
| 3tqi_A | 527 | GMP synthase [glutamine-hydrolyzing]; ligase; 2.84 | 100.0 | |
| 4gud_A | 211 | Imidazole glycerol phosphate synthase subunit His; | 100.0 | |
| 1a9x_B | 379 | Carbamoyl phosphate synthetase (small chain); amid | 99.98 | |
| 2vxo_A | 697 | GMP synthase [glutamine-hydrolyzing]; proto-oncoge | 99.97 | |
| 1o1y_A | 239 | Conserved hypothetical protein TM1158; flavodoxin- | 99.96 | |
| 3fij_A | 254 | LIN1909 protein; 11172J, uncharacterized protein, | 99.96 | |
| 3l7n_A | 236 | Putative uncharacterized protein; glutamine amidot | 99.96 | |
| 2ywj_A | 186 | Glutamine amidotransferase subunit PDXT; uncharact | 99.96 | |
| 3m3p_A | 250 | Glutamine amido transferase; structural genomics, | 99.96 | |
| 2w7t_A | 273 | CTP synthetase, putative cytidine triphosphate syn | 99.96 | |
| 1gpw_B | 201 | Amidotransferase HISH; lyase/transferase, complex | 99.95 | |
| 3d54_D | 213 | Phosphoribosylformylglycinamidine synthase 1; alph | 99.94 | |
| 1l9x_A | 315 | Gamma-glutamyl hydrolase; 1.60A {Homo sapiens} SCO | 99.94 | |
| 1vco_A | 550 | CTP synthetase; tetramer, riken structural genomic | 99.93 | |
| 1ka9_H | 200 | Imidazole glycerol phosphtate synthase; riken stru | 99.93 | |
| 2nv0_A | 196 | Glutamine amidotransferase subunit PDXT; 3-layer(A | 99.93 | |
| 2v4u_A | 289 | CTP synthase 2; pyrimidine biosynthesis, glutamine | 99.93 | |
| 1q7r_A | 219 | Predicted amidotransferase; structural genomics, Y | 99.92 | |
| 1s1m_A | 545 | CTP synthase; CTP synthetase, UTP:ammonia ligase ( | 99.92 | |
| 2ywd_A | 191 | Glutamine amidotransferase subunit PDXT; pyridoxin | 99.9 | |
| 1jvn_A | 555 | Glutamine, bifunctional histidine biosynthesis pro | 99.89 | |
| 2iss_D | 208 | Glutamine amidotransferase subunit PDXT; (beta/alp | 99.88 | |
| 3nva_A | 535 | CTP synthase; rossman fold, nucleotide binding, LI | 99.88 | |
| 2abw_A | 227 | PDX2 protein, glutaminase; PLP-synthase, vitamin B | 99.84 | |
| 2vdj_A | 301 | Homoserine O-succinyltransferase; methionine biosy | 99.72 | |
| 2h2w_A | 312 | Homoserine O-succinyltransferase; TM0881, (EC 2.3. | 99.71 | |
| 3ugj_A | 1303 | Phosphoribosylformylglycinamidine synthase; amidot | 99.15 | |
| 3l4e_A | 206 | Uncharacterized peptidase LMO0363; hypothetical pr | 98.08 | |
| 1fy2_A | 229 | Aspartyl dipeptidase; serine protease, catalytic t | 97.98 | |
| 1oi4_A | 193 | Hypothetical protein YHBO; PFPI/THIJ family, compl | 97.41 | |
| 2vrn_A | 190 | Protease I, DR1199; cysteine sulfenic acid, DJ-1/T | 96.93 | |
| 3l18_A | 168 | Intracellular protease I; gatase1_PFPI_LIKE, hydro | 96.85 | |
| 2ab0_A | 205 | YAJL; DJ-1/THIJ superfamily, alpha-beta hydrolase | 96.58 | |
| 2rk3_A | 197 | Protein DJ-1; parkinson'S disease, THIJ, PFPI, cha | 96.58 | |
| 4hcj_A | 177 | THIJ/PFPI domain protein; structural genomics, PSI | 96.58 | |
| 3cne_A | 175 | Putative protease I; structural genomics, PSI-2, M | 96.52 | |
| 1vhq_A | 232 | Enhancing lycopene biosynthesis protein 2; structu | 96.44 | |
| 3l3b_A | 242 | ES1 family protein; ssgcid, NIH, niaid, SBRI, UW, | 95.94 | |
| 4e08_A | 190 | DJ-1 beta; flavodoxin-like fold, stress response, | 95.68 | |
| 1u9c_A | 224 | APC35852; structural genomics, protein structure i | 95.22 | |
| 3f5d_A | 206 | Protein YDEA; unknow protein, PSI-II, nysgrc, stru | 95.07 | |
| 3ej6_A | 688 | Catalase-3; heme, hydrogen iron, metal-binding, ox | 94.84 | |
| 3efe_A | 212 | THIJ/PFPI family protein; structural GEN csgid, ce | 94.78 | |
| 2fex_A | 188 | Conserved hypothetical protein; structural genomic | 94.66 | |
| 3uk7_A | 396 | Class I glutamine amidotransferase-like domain-CO | 94.26 | |
| 3uk7_A | 396 | Class I glutamine amidotransferase-like domain-CO | 93.89 | |
| 3ot1_A | 208 | 4-methyl-5(B-hydroxyethyl)-thiazole monophosphate | 93.85 | |
| 2iuf_A | 688 | Catalase; oxidoreductase; HET: HDD NAG; 1.71A {Pen | 93.53 | |
| 1rw7_A | 243 | YDR533CP; alpha-beta sandwich, DJ-1/THIJ/PFPI supe | 93.33 | |
| 3ttv_A | 753 | Catalase HPII; heme orientation, oxidoreductase; H | 93.13 | |
| 1sy7_A | 715 | Catalase 1; heme oxidation, singlet oxygen, oxidor | 92.29 | |
| 3gra_A | 202 | Transcriptional regulator, ARAC family; transcript | 91.82 | |
| 3fse_A | 365 | Two-domain protein containing DJ-1/THIJ/PFPI-like | 91.59 | |
| 1z0s_A | 278 | Probable inorganic polyphosphate/ATP-NAD kinase; A | 91.58 | |
| 3n7t_A | 247 | Macrophage binding protein; seattle structural gen | 90.91 | |
| 1n57_A | 291 | Chaperone HSP31, protein YEDU; alpha-beta sandwich | 90.11 | |
| 3kkl_A | 244 | Probable chaperone protein HSP33; peptidase, heat | 89.91 | |
| 3er6_A | 209 | Putative transcriptional regulator protein; struct | 89.72 | |
| 3noq_A | 231 | THIJ/PFPI family protein; DJ-1 superfamily, isocya | 88.19 | |
| 3eod_A | 130 | Protein HNR; response regulator, phosphoprotein, t | 87.89 | |
| 3f6c_A | 134 | Positive transcription regulator EVGA; structural | 87.33 | |
| 2rjn_A | 154 | Response regulator receiver:metal-dependent phosph | 86.81 | |
| 2qr3_A | 140 | Two-component system response regulator; structura | 86.79 | |
| 3grc_A | 140 | Sensor protein, kinase; protein structure initiati | 86.16 | |
| 3jte_A | 143 | Response regulator receiver protein; structural ge | 85.96 | |
| 2rdm_A | 132 | Response regulator receiver protein; structural ge | 85.58 | |
| 3i42_A | 127 | Response regulator receiver domain protein (CHEY- | 85.38 | |
| 1qkk_A | 155 | DCTD, C4-dicarboxylate transport transcriptional r | 85.16 | |
| 3cz5_A | 153 | Two-component response regulator, LUXR family; str | 85.12 | |
| 2zay_A | 147 | Response regulator receiver protein; structural ge | 85.09 | |
| 2pl1_A | 121 | Transcriptional regulatory protein PHOP; CHEY-like | 84.73 | |
| 3cg4_A | 142 | Response regulator receiver domain protein (CHEY-; | 84.58 | |
| 3hzh_A | 157 | Chemotaxis response regulator (CHEY-3); phosphatas | 84.42 | |
| 3hdg_A | 137 | Uncharacterized protein; two-component sensor acti | 84.29 | |
| 3ewn_A | 253 | THIJ/PFPI family protein; monomer, PSI nysgrc, str | 83.47 | |
| 2qxy_A | 142 | Response regulator; regulation of transcription, N | 83.33 | |
| 2j48_A | 119 | Two-component sensor kinase; pseudo-receiver, circ | 83.26 | |
| 3cnb_A | 143 | DNA-binding response regulator, MERR family; signa | 83.16 | |
| 3hv2_A | 153 | Response regulator/HD domain protein; PSI-2, NYSGX | 82.64 | |
| 3hdv_A | 136 | Response regulator; PSI-II, structural genomics, P | 82.55 | |
| 3mgk_A | 211 | Intracellular protease/amidase related enzyme (THI | 82.33 | |
| 4e7p_A | 150 | Response regulator; DNA binding, cytosol, transcri | 82.23 | |
| 3kht_A | 144 | Response regulator; PSI-II, 11023K, structural gen | 81.54 | |
| 3qvl_A | 245 | Putative hydantoin racemase; isomerase; HET: 5HY; | 81.49 | |
| 3gt7_A | 154 | Sensor protein; structural genomics, signal receiv | 81.42 | |
| 3bhn_A | 236 | THIJ/PFPI domain protein; structural genomics, joi | 81.02 | |
| 2qsj_A | 154 | DNA-binding response regulator, LUXR family; struc | 80.77 |
| >1qdl_B Protein (anthranilate synthase (TRPG-SUBUNIT)); tryptophan biosynthesis, glutamine amidotransferase, allosteric interaction, lyase; 2.50A {Sulfolobus solfataricus} SCOP: c.23.16.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-40 Score=299.09 Aligned_cols=187 Identities=48% Similarity=0.782 Sum_probs=163.3
Q ss_pred cE-EEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHH-
Q 046651 5 VR-TLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLE- 82 (392)
Q Consensus 5 ~r-~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~- 82 (392)
|| |+||||++||++++.++|++ .|++++++++++.+++++.. ..+|+|||+||||++....+.++..+++++
T Consensus 1 m~mi~iid~~~s~~~~~~~~l~~-~G~~~~v~~~~~~~~~~~~~-----~~~dglil~gG~~~~~~~~~~~~~~~~i~~~ 74 (195)
T 1qdl_B 1 MDLTLIIDNYDSFVYNIAQIVGE-LGSYPIVIRNDEISIKGIER-----IDPDRLIISPGPGTPEKREDIGVSLDVIKYL 74 (195)
T ss_dssp CCEEEEEECSCSSHHHHHHHHHH-TTCEEEEEETTTSCHHHHHH-----HCCSEEEECCCSSCTTSHHHHTTHHHHHHHH
T ss_pred CCEEEEEECCCchHHHHHHHHHh-CCCEEEEEeCCCCCHHHHhh-----CCCCEEEECCCCCChhhhhhhhHHHHHHHHh
Confidence 66 99999999999999999998 79999999998666777754 369999999999998764444455566654
Q ss_pred cCCCCEEEEcHHHHHHHHHhCCeeeecCCCceeceeEEEe-cCC--cccccCCCCCCcceEEEeeecceeecCCCCCCcE
Q 046651 83 CWDVPILGVCLGHQALGFVHGADIVHAPEPVHGRLSEIVH-NGD--RLFHDIPSGQNSGFKVVRYHSLIIDADSLPKELI 159 (392)
Q Consensus 83 ~~~iPILGVCLGhQ~La~a~Gg~V~~apep~hG~~s~i~h-~g~--~LF~~ips~~~s~f~VvryHSl~V~~~sLP~~l~ 159 (392)
..++||||||+|||+|+.++||+|.+.+...||....+.+ .++ +||+++|.. +.+.++|++.|+. +|++++
T Consensus 75 ~~~~PvLGIC~G~QlL~~~~gg~v~~~~~~~~g~~~~v~~~~~~~~~l~~~~~~~----~~v~~~H~~~v~~--l~~~~~ 148 (195)
T 1qdl_B 75 GKRTPILGVCLGHQAIGYAFGAKIRRARKVFHGKISNIILVNNSPLSLYYGIAKE----FKATRYHSLVVDE--VHRPLI 148 (195)
T ss_dssp TTTSCEEEETHHHHHHHHHTTCEEEEEEEEEEEEEEEEEECCSSCCSTTTTCCSE----EEEEEEEEEEEEC--CCTTEE
T ss_pred cCCCcEEEEehHHHHHHHHhCCEEeccCCCcCCCceEEEECCCCHhHHHhcCCCc----eEEeccccchhhh--CCCCcE
Confidence 3589999999999999999999999988788998777776 567 899999876 9999999999986 999999
Q ss_pred EEEEe-cCCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCcccccccccCCcceEEEEEecCCCEEEEeccC
Q 046651 160 PIAWS-NSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGIMHSTRPHYGVQFHP 238 (392)
Q Consensus 160 ~iAwt-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vmgi~h~~~P~~GVQFHP 238 (392)
++|++ ++ + .++|+++.++|+|||||||
T Consensus 149 vla~s~~~--------------g--------------------------------------~i~a~~~~~~~~~gvQfHP 176 (195)
T 1qdl_B 149 VDAISAED--------------N--------------------------------------EIMAIHHEEYPIYGVQFHP 176 (195)
T ss_dssp EEEEESSS--------------C--------------------------------------CEEEEEESSSSEEEESSBT
T ss_pred EEEEECCC--------------C--------------------------------------cEEEEEeCCCCEEEEecCC
Confidence 99999 66 6 8999999888999999999
Q ss_pred CCCCCchhHHHHHHHHH
Q 046651 239 ESIATCYGSKILRNFRE 255 (392)
Q Consensus 239 Esiat~~G~~I~~NF~~ 255 (392)
|+..++.|.+||+||++
T Consensus 177 E~~~~~~g~~l~~~f~~ 193 (195)
T 1qdl_B 177 ESVGTSLGYKILYNFLN 193 (195)
T ss_dssp TSTTCTTHHHHHHHHHH
T ss_pred CCCCCccHHHHHHHHHh
Confidence 99888999999999987
|
| >1i1q_B Anthranilate synthase component II; tryptophan biosynthesis, lyase; HET: TRP; 1.90A {Salmonella typhimurium} SCOP: c.23.16.1 PDB: 1i7q_B 1i7s_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-39 Score=293.36 Aligned_cols=189 Identities=34% Similarity=0.529 Sum_probs=154.4
Q ss_pred cEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHH-c
Q 046651 5 VRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLE-C 83 (392)
Q Consensus 5 ~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~-~ 83 (392)
+||+||||+||||+||.++|++ .|+++++++++.. ++++...+.. ...+++||+||||+|... +....+++. .
T Consensus 1 ~~i~iiDn~~s~~~~i~~~l~~-~G~~~~v~~~~~~-~~~i~~~l~~-~~~~~iil~gGpg~~~~~---~~~~~l~~~~~ 74 (192)
T 1i1q_B 1 ADILLLDNIDSFTWNLADQLRT-NGHNVVIYRNHIP-AQTLIDRLAT-MKNPVLMLSPGPGVPSEA---GCMPELLTRLR 74 (192)
T ss_dssp CEEEEEECSCSSHHHHHHHHHH-TTCEEEEEETTSC-SHHHHHHHTT-CSSEEEEECCCSSCGGGS---TTHHHHHHHHB
T ss_pred CcEEEEECCccHHHHHHHHHHH-CCCeEEEEECCCC-HHHHHHHhhh-ccCCeEEECCCCcCchhC---chHHHHHHHHh
Confidence 6899999999999999999998 7999999999853 6666544311 135579999999998642 334445544 3
Q ss_pred CCCCEEEEcHHHHHHHHHhCCeeeecCCCceeceeEEEecCCcccccCCCCCCcceEEEeeecceeecCCCCCCcEEEEE
Q 046651 84 WDVPILGVCLGHQALGFVHGADIVHAPEPVHGRLSEIVHNGDRLFHDIPSGQNSGFKVVRYHSLIIDADSLPKELIPIAW 163 (392)
Q Consensus 84 ~~iPILGVCLGhQ~La~a~Gg~V~~apep~hG~~s~i~h~g~~LF~~ips~~~s~f~VvryHSl~V~~~sLP~~l~~iAw 163 (392)
.++||||||+|||+|+.++||++.+.+.+.+|+...+.+++++||+++|.. +.+++||++.|.. +|++++++|.
T Consensus 75 ~~~PilGIC~G~Qll~~~~Gg~v~~~~~~~~g~~~~~~~~~~~l~~~~~~~----~~v~~~H~~~v~~--lp~~~~v~a~ 148 (192)
T 1i1q_B 75 GKLPIIGICLGHQAIVEAYGGYVGQAGEILHGKATSIEHDGQAMFAGLANP----LPVARYHSLVGSN--VPAGLTINAH 148 (192)
T ss_dssp TTBCEEEETHHHHHHHHHTSCCCCC---CCSSEEEEEEECCCGGGTTSCSS----EEEEECCC---CC--CCTTCEEEEE
T ss_pred cCCCEEEECcChHHHHHHhCCEEEeCCCcEecceeEEecCCChHHhcCCCC----cEEEechhhHhhh--CCCccEEEEC
Confidence 589999999999999999999999887888998887778888999999877 9999999999976 9999999984
Q ss_pred ecCCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCcccccccccCCcceEEEEEecCCCEEEEeccCCCCCC
Q 046651 164 SNSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGIMHSTRPHYGVQFHPESIAT 243 (392)
Q Consensus 164 t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vmgi~h~~~P~~GVQFHPEsiat 243 (392)
+ + + .++|++|.+.|+||||||||+..+
T Consensus 149 ~-~--------------~--------------------------------------~~~ai~~~~~~~~gvQfHPE~~~~ 175 (192)
T 1i1q_B 149 F-N--------------G--------------------------------------MVMAVRHDADRVCGFQFHPESILT 175 (192)
T ss_dssp E-T--------------T--------------------------------------EEEEEEETTTTEEEESSBTTSTTC
T ss_pred C-C--------------C--------------------------------------cEEEEEECCCCEEEEEccCcccCC
Confidence 3 3 3 799999999999999999999889
Q ss_pred chhHHHHHHHHHHHH
Q 046651 244 CYGSKILRNFREITE 258 (392)
Q Consensus 244 ~~G~~I~~NF~~l~~ 258 (392)
+.|.+||+||++++.
T Consensus 176 ~~g~~il~nf~~~~~ 190 (192)
T 1i1q_B 176 TQGARLLEQTLAWAQ 190 (192)
T ss_dssp TTHHHHHHHHHHHHT
T ss_pred cccHHHHHHHHHHHh
Confidence 999999999998753
|
| >2a9v_A GMP synthase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, ligase; 2.24A {Thermoplasma acidophilum} SCOP: c.23.16.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-37 Score=288.95 Aligned_cols=190 Identities=31% Similarity=0.522 Sum_probs=164.0
Q ss_pred ccEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCC-CCCCCCCCchhHHHHHHHH
Q 046651 4 FVRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPG-PGSPACPEDIGICLRVLLE 82 (392)
Q Consensus 4 ~~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpG-PGsp~~~~d~gi~~~ll~~ 82 (392)
.||+|+||++|+|++++.++|.+ .|.+++++++++ +.+++ ..+|+|||+|| |++++...+...+.+.+.+
T Consensus 13 ~~~i~~id~~~~~~~~~~~~l~~-~G~~~~vv~~~~-~~~~l-------~~~DglIl~GG~p~~~~~~~~~~~l~~~~~~ 83 (212)
T 2a9v_A 13 MLKIYVVDNGGQWTHREWRVLRE-LGVDTKIVPNDI-DSSEL-------DGLDGLVLSGGAPNIDEELDKLGSVGKYIDD 83 (212)
T ss_dssp CCBEEEEEESCCTTCHHHHHHHH-TTCBCCEEETTS-CGGGG-------TTCSEEEEEEECSCGGGTGGGHHHHHHHHHH
T ss_pred cceEEEEeCCCccHHHHHHHHHH-CCCEEEEEeCCC-CHHHH-------hCCCEEEECCCCCCCCcccccchhHHHHHHh
Confidence 48999999999999999999998 699999999876 35554 34999999999 8998764333444455555
Q ss_pred cCCCCEEEEcHHHHHHHHHhCCeeeecCCCceeceeEEEecCCcccccCCCCCCcceEEEeeecceeecCCCCCCcEEEE
Q 046651 83 CWDVPILGVCLGHQALGFVHGADIVHAPEPVHGRLSEIVHNGDRLFHDIPSGQNSGFKVVRYHSLIIDADSLPKELIPIA 162 (392)
Q Consensus 83 ~~~iPILGVCLGhQ~La~a~Gg~V~~apep~hG~~s~i~h~g~~LF~~ips~~~s~f~VvryHSl~V~~~sLP~~l~~iA 162 (392)
. ++||||||+|||+|+.++||+|.+.+.+.+|+.......+++||++++.. +.|+.+|++.|+. +|++++++|
T Consensus 84 ~-~~PiLGIC~G~Qll~~~lGg~v~~~~~~~~G~~~v~~~~~~~l~~~~~~~----~~v~~~H~~~v~~--l~~~~~vlA 156 (212)
T 2a9v_A 84 H-NYPILGICVGAQFIALHFGASVVKAKHPEFGKTKVSVMHSENIFGGLPSE----ITVWENHNDEIIN--LPDDFTLAA 156 (212)
T ss_dssp C-CSCEEEETHHHHHHHHHTTCEEEEEEEEEEEEEEEEESCCCGGGTTCCSE----EEEEEEEEEEEES--CCTTEEEEE
T ss_pred C-CCCEEEEChHHHHHHHHhCCEEEcCCCcccCceeeEECCCChhHhcCCCc----eEEEeEhhhhHhh--CCCCcEEEE
Confidence 4 89999999999999999999999998889998766555678999999876 8999999999987 999999999
Q ss_pred EecCCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCcccccccccCCcceEEEEEecCCCEEEEeccCCCCC
Q 046651 163 WSNSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGIMHSTRPHYGVQFHPESIA 242 (392)
Q Consensus 163 wt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vmgi~h~~~P~~GVQFHPEsia 242 (392)
++++ + .++|+++.+.++||||||||+..
T Consensus 157 ~s~d--------------~--------------------------------------~i~ai~~~~~~i~gvQfHPE~~~ 184 (212)
T 2a9v_A 157 SSAT--------------C--------------------------------------QVQGFYHKTRPIYATQFHPEVEH 184 (212)
T ss_dssp ECSS--------------C--------------------------------------SCSEEEESSSSEEEESSCTTSTT
T ss_pred EeCC--------------C--------------------------------------CEEEEEECCCCEEEEEeCCCCCC
Confidence 9987 6 79999998889999999999988
Q ss_pred CchhHHHHHHHHHHHHHhh
Q 046651 243 TCYGSKILRNFREITEDYW 261 (392)
Q Consensus 243 t~~G~~I~~NF~~l~~~~~ 261 (392)
++.|.+||+||++++..+.
T Consensus 185 ~~~g~~l~~~F~~~~~~~~ 203 (212)
T 2a9v_A 185 TQYGRDIFRNFIGICASYR 203 (212)
T ss_dssp STTHHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHhh
Confidence 8899999999999987653
|
| >1wl8_A GMP synthase [glutamine-hydrolyzing] subunit A; transferase, gatases, riken structural genomics/proteomics initiative, RSGI; 1.45A {Pyrococcus horikoshii} SCOP: c.23.16.1 PDB: 2d7j_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-36 Score=274.49 Aligned_cols=185 Identities=30% Similarity=0.489 Sum_probs=157.6
Q ss_pred cEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHH--
Q 046651 5 VRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLE-- 82 (392)
Q Consensus 5 ~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~-- 82 (392)
|||+|||++++|++++.+.|++ .|.+++++++++ +++++.. ..+|+|||+||| +|.. .+...+++++
T Consensus 1 mmi~iid~~~~~~~~~~~~l~~-~G~~~~~~~~~~-~~~~~~~-----~~~dglil~Gg~-~~~~---~~~~~~~i~~~~ 69 (189)
T 1wl8_A 1 MMIVIMDNGGQYVHRIWRTLRY-LGVETKIIPNTT-PLEEIKA-----MNPKGIIFSGGP-SLEN---TGNCEKVLEHYD 69 (189)
T ss_dssp CEEEEEECSCTTHHHHHHHHHH-TTCEEEEEETTC-CHHHHHH-----TCCSEEEECCCS-CTTC---CTTHHHHHHTGG
T ss_pred CeEEEEECCCchHHHHHHHHHH-CCCeEEEEECCC-ChHHhcc-----cCCCEEEECCCC-Chhh---hhhHHHHHHHHh
Confidence 7899999999999999999998 699999999887 4667654 569999999998 7654 3444566665
Q ss_pred cCCCCEEEEcHHHHHHHHHhCCeeeecCCCceeceeEEEecCCcccccCCCCCCcceEEEeeecceeecCCCCCCcEEEE
Q 046651 83 CWDVPILGVCLGHQALGFVHGADIVHAPEPVHGRLSEIVHNGDRLFHDIPSGQNSGFKVVRYHSLIIDADSLPKELIPIA 162 (392)
Q Consensus 83 ~~~iPILGVCLGhQ~La~a~Gg~V~~apep~hG~~s~i~h~g~~LF~~ips~~~s~f~VvryHSl~V~~~sLP~~l~~iA 162 (392)
..++||||||+|||+|+.++||+|.+.+.+.+|+.......+++||++++.. +.+..+|...+.. ||++++++|
T Consensus 70 ~~~~PilGIC~G~Q~l~~~~gg~v~~~~~~~~G~~~~~~~~~~~l~~~~~~~----~~~~~~h~~~v~~--l~~~~~vla 143 (189)
T 1wl8_A 70 EFNVPILGICLGHQLIAKFFGGKVGRGEKAEYSLVEIEIIDEXEIFKGLPKR----LKVWESHMDEVKE--LPPKFKILA 143 (189)
T ss_dssp GTCSCEEEETHHHHHHHHHHTCEEEECSCCSCEEEEEEESCC--CCTTSCSE----EEEEECCSEEEEE--CCTTEEEEE
T ss_pred hCCCeEEEEcHHHHHHHHHhCCceecCCCcccCceeEEEecCchHHhCCCCc----eEEEEEeeeehhh--CCCCcEEEE
Confidence 3589999999999999999999999988889998776666788899988876 8887777777765 999999999
Q ss_pred EecCCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCcccccccccCCcceEEEEEecCCCEEEEeccCCCCC
Q 046651 163 WSNSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGIMHSTRPHYGVQFHPESIA 242 (392)
Q Consensus 163 wt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vmgi~h~~~P~~GVQFHPEsia 242 (392)
++++ + .++|+++.++|+||||||||+..
T Consensus 144 ~s~~--------------g--------------------------------------~i~a~~~~~~~~~gvQfHPE~~~ 171 (189)
T 1wl8_A 144 RSET--------------C--------------------------------------PIEAMKHEELPIYGVQFHPEVAH 171 (189)
T ss_dssp EESS--------------C--------------------------------------SCSEEEESSSCEEEESSCTTSTT
T ss_pred EcCC--------------C--------------------------------------CEEEEEeCCceEEEEecCCCcCC
Confidence 9987 6 79999999889999999999988
Q ss_pred CchhHHHHHHHHHHHH
Q 046651 243 TCYGSKILRNFREITE 258 (392)
Q Consensus 243 t~~G~~I~~NF~~l~~ 258 (392)
++.|.+||+||++++.
T Consensus 172 ~~~g~~l~~~f~~~~~ 187 (189)
T 1wl8_A 172 TEKGEEILRNFAKLCG 187 (189)
T ss_dssp STTHHHHHHHHHHHHC
T ss_pred CcchHHHHHHHHHHHh
Confidence 8899999999999873
|
| >2vpi_A GMP synthase; guanine monophosphate synthetase, phosphoprotein, GMP synthetase, GMP biosynthesis, glutamine amidotransferase, ligase, cytoplasm; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-35 Score=275.78 Aligned_cols=186 Identities=25% Similarity=0.321 Sum_probs=150.0
Q ss_pred cEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHHcC
Q 046651 5 VRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLECW 84 (392)
Q Consensus 5 ~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~~~ 84 (392)
.||+|||++++|++++.+.|.+ .|+++++++.+.. .+++.. ..+|+|||+|||++++......+... +.+ .
T Consensus 25 ~~I~iiD~g~~~~~~i~~~l~~-~G~~~~vv~~~~~-~~~l~~-----~~~dglil~Gg~~~~~~~~~~~~~~~-~~~-~ 95 (218)
T 2vpi_A 25 GAVVILDAGAQYGKVIDRRVRE-LFVQSEIFPLETP-AFAIKE-----QGFRAIIISGGPNSVYAEDAPWFDPA-IFT-I 95 (218)
T ss_dssp TCEEEEECSTTTTHHHHHHHHH-TTCCEEEECTTCC-HHHHHH-----HTCSEEEEEC---------CCCCCGG-GGT-S
T ss_pred CeEEEEECCCchHHHHHHHHHH-CCCEEEEEECCCC-hHHHhh-----cCCCEEEECCCCcccccccchhHHHH-HHH-c
Confidence 4799999999999999999998 7999999998764 666654 46999999999998864322221122 223 4
Q ss_pred CCCEEEEcHHHHHHHHHhCCeeeecCCCceeceeEEEecCCcccccCCCCCCcceEEEeeecceeecCCCCCCcEEEEEe
Q 046651 85 DVPILGVCLGHQALGFVHGADIVHAPEPVHGRLSEIVHNGDRLFHDIPSGQNSGFKVVRYHSLIIDADSLPKELIPIAWS 164 (392)
Q Consensus 85 ~iPILGVCLGhQ~La~a~Gg~V~~apep~hG~~s~i~h~g~~LF~~ips~~~s~f~VvryHSl~V~~~sLP~~l~~iAwt 164 (392)
++||||||+|||+|+.++||+|.+.+.+.+|+.......+++||++++.. +.|.++|++.|+. ||++++++|++
T Consensus 96 ~~PilGIC~G~Qll~~~~GG~v~~~~~~~~G~~~v~~~~~~~l~~~l~~~----~~v~~~H~~~v~~--l~~~~~vlA~s 169 (218)
T 2vpi_A 96 GKPVLGICYGMQMMNKVFGGTVHKKSVREDGVFNISVDNTCSLFRGLQKE----EVVLLTHGDSVDK--VADGFKVVARS 169 (218)
T ss_dssp SCCEEEETHHHHHHHHHTTCCEEEEEECSCEEEEEEECTTSGGGTTCCSE----EEEEECSEEEESS--CCTTCEEEEEE
T ss_pred CCCEEEEcHHHHHHHHHhCCceEeCCCCcccEEEEEEccCChhHhcCCCC----cEEeehhhhHhhh--cCCCCEEEEEc
Confidence 89999999999999999999999988888897643334578999999876 8999999999976 99999999998
Q ss_pred cCCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCcccccccccCCcceEEEEEecCCCEEEEeccCCCCCCc
Q 046651 165 NSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGIMHSTRPHYGVQFHPESIATC 244 (392)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vmgi~h~~~P~~GVQFHPEsiat~ 244 (392)
+ + .++|+++.+.|+||||||||+..++
T Consensus 170 -~--------------~--------------------------------------~i~ai~~~~~~i~gvQfHPE~~~~~ 196 (218)
T 2vpi_A 170 -G--------------N--------------------------------------IVAGIANESKKLYGAQFHPEVGLTE 196 (218)
T ss_dssp -T--------------T--------------------------------------EEEEEEETTTTEEEESSCTTSTTST
T ss_pred -C--------------C--------------------------------------eEEEEEECCCCEEEEEcCCCCCCCh
Confidence 4 4 8999999999999999999998888
Q ss_pred hhHHHHHHHH-HHHH
Q 046651 245 YGSKILRNFR-EITE 258 (392)
Q Consensus 245 ~G~~I~~NF~-~l~~ 258 (392)
.|++||+||+ +++.
T Consensus 197 ~g~~l~~~F~~~~~~ 211 (218)
T 2vpi_A 197 NGKVILKNFLYDIAG 211 (218)
T ss_dssp THHHHHHHHHTTTTC
T ss_pred hHHHHHHHHHHHHhC
Confidence 9999999999 7763
|
| >3r75_A Anthranilate/para-aminobenzoate synthases compone; ammonia channel, chorismate, type 1 glutamine amidotransfera phenazine biosynthesis, lyase; HET: CYG; 2.10A {Burkholderia SP} PDB: 3r74_A* 3r76_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-34 Score=308.59 Aligned_cols=186 Identities=25% Similarity=0.284 Sum_probs=161.1
Q ss_pred ccEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCc--hhHHHHHHH
Q 046651 4 FVRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPED--IGICLRVLL 81 (392)
Q Consensus 4 ~~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d--~gi~~~ll~ 81 (392)
.++|+||||||||++||.+.|.+ .|+.++|++++.. .++ ..+|+||||||||+|....+ +..+.++|+
T Consensus 446 Gk~IlviD~gdsf~~~l~~~l~~-~G~~v~Vv~~d~~--~~~-------~~~DgIIlsGGPg~p~d~~~p~i~~~~~lI~ 515 (645)
T 3r75_A 446 GCRALIVDAEDHFTAMIAQQLSS-LGLATEVCGVHDA--VDL-------ARYDVVVMGPGPGDPSDAGDPRIARLYAWLR 515 (645)
T ss_dssp TCEEEEEESSCTHHHHHHHHHHH-TTCEEEEEETTCC--CCG-------GGCSEEEECCCSSCTTCTTSHHHHHHHHHHH
T ss_pred CCEEEEEECCccHHHHHHHHHHH-CCCEEEEEECCCc--ccc-------cCCCEEEECCCCCChhhhhhhhHHHHHHHHH
Confidence 37999999999999999999998 7999999999875 122 45999999999999987653 233445555
Q ss_pred H--cCCCCEEEEcHHHHHHHHHhCCeeeecCCCceeceeEEEecCCcccccCCCCCCcceEEEeeecceeecCCCCCCcE
Q 046651 82 E--CWDVPILGVCLGHQALGFVHGADIVHAPEPVHGRLSEIVHNGDRLFHDIPSGQNSGFKVVRYHSLIIDADSLPKELI 159 (392)
Q Consensus 82 ~--~~~iPILGVCLGhQ~La~a~Gg~V~~apep~hG~~s~i~h~g~~LF~~ips~~~s~f~VvryHSl~V~~~sLP~~l~ 159 (392)
+ ..++||||||+|||+|+.++||+|.+.+.+.||..+.+.+.++.+|.+++.. +.|..+|...+.. +|++++
T Consensus 516 ~a~~~~iPiLGIClG~QlLa~alGG~V~~~~~~~~G~~~~i~~~~~~l~~~~~~~----~~v~~~h~~~~~~--lp~g~~ 589 (645)
T 3r75_A 516 HLIDEGKPFMAVCLSHQILNAILGIPLVRREVPNQGIQVEIDLFGQRERVGFYNT----YVAQTVRDEMDVD--GVGTVA 589 (645)
T ss_dssp HHHHHTCCEEEETHHHHHHHHHTTCCEEEEEEEEEEEEEEEEETTEEEEEEEEEE----EEEBCSCSEEEET--TTEEEE
T ss_pred HHHHCCCCEEEECHHHHHHHHHhCCEEEcCCCcccccceEEeeecCcceecCCCc----EEEEEehhhcccc--CCCCeE
Confidence 4 2499999999999999999999999999999999999988888999988876 8888888887766 999999
Q ss_pred EEEEecCCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCcccccccccCCcceEEEEEecCCCEEEEeccCC
Q 046651 160 PIAWSNSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGIMHSTRPHYGVQFHPE 239 (392)
Q Consensus 160 ~iAwt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vmgi~h~~~P~~GVQFHPE 239 (392)
++|++++ + .+|||+|.. +||||||||
T Consensus 590 v~A~s~d--------------g--------------------------------------~i~Ai~~~~--~~GVQFHPE 615 (645)
T 3r75_A 590 ISRDPRT--------------G--------------------------------------EVHALRGPT--FSSMQFHAE 615 (645)
T ss_dssp EEECTTT--------------C--------------------------------------BEEEEEETT--EEEESSBTT
T ss_pred EEEEcCC--------------C--------------------------------------cEEEEEcCC--EEEEEeCCe
Confidence 9999987 6 899999864 799999999
Q ss_pred CCCCchhHHHHHHHHHHHHH
Q 046651 240 SIATCYGSKILRNFREITED 259 (392)
Q Consensus 240 siat~~G~~I~~NF~~l~~~ 259 (392)
++.|++|.+||+||++.+..
T Consensus 616 ~~~t~~G~~Ll~nFl~~~~~ 635 (645)
T 3r75_A 616 SVLTVDGPRILGEAITHAIR 635 (645)
T ss_dssp STTCTTHHHHHHHHHHHHTT
T ss_pred ecCCcchHHHHHHHHHHHHh
Confidence 99999999999999998753
|
| >2ywb_A GMP synthase [glutamine-hydrolyzing]; GMP synthetase, XMP binding, ATP binding, purine nucleotide biosynthetic pathway, structural genomics; 2.10A {Thermus thermophilus} PDB: 2ywc_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.4e-34 Score=294.56 Aligned_cols=185 Identities=26% Similarity=0.350 Sum_probs=156.0
Q ss_pred EEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHHcCC
Q 046651 6 RTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLECWD 85 (392)
Q Consensus 6 r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~~~~ 85 (392)
||||||++++|+++|.+.|++ .|+.+++++++. +.+++.. ..+|+|||||||++++......+... +.+ .+
T Consensus 1 mi~ilD~g~~~~~~i~r~l~~-~G~~~~i~p~~~-~~~~i~~-----~~~dgiIlsGGp~s~~~~~~~~~~~~-~~~-~~ 71 (503)
T 2ywb_A 1 MVLVLDFGSQYTRLIARRLRE-LRAFSLILPGDA-PLEEVLK-----HRPQALILSGGPRSVFDPDAPRPDPR-LFS-SG 71 (503)
T ss_dssp CEEEEESSCTTHHHHHHHHHT-TTCCEEEEETTC-CHHHHHT-----TCCSEEEECCCSSCSSCTTCCCCCGG-GGC-SS
T ss_pred CEEEEECCCcHHHHHHHHHHH-CCCEEEEEECCC-CHHHHHh-----cCCCEEEECCCCchhccCCCcchHHH-HHh-CC
Confidence 499999999999999999998 799999999886 4777765 35799999999999876432222112 223 48
Q ss_pred CCEEEEcHHHHHHHHHhCCeeeecCCCceeceeEEEecCCcccccCCCCCCcceEEEeeecceeecCCCCCCcEEEEEec
Q 046651 86 VPILGVCLGHQALGFVHGADIVHAPEPVHGRLSEIVHNGDRLFHDIPSGQNSGFKVVRYHSLIIDADSLPKELIPIAWSN 165 (392)
Q Consensus 86 iPILGVCLGhQ~La~a~Gg~V~~apep~hG~~s~i~h~g~~LF~~ips~~~s~f~VvryHSl~V~~~sLP~~l~~iAwt~ 165 (392)
+||||||+|||+|+.++||+|.+.+.+++|+....... ++||+++|.. +.|+++|++.|+. +|++++++|+++
T Consensus 72 ~PvLGIC~G~Qlla~~~GG~v~~~~~~e~G~~~v~~~~-~~l~~~~~~~----~~v~~~H~~~v~~--lp~g~~v~A~s~ 144 (503)
T 2ywb_A 72 LPLLGICYGMQLLAQELGGRVERAGRAEYGKALLTRHE-GPLFRGLEGE----VQVWMSHQDAVTA--PPPGWRVVAETE 144 (503)
T ss_dssp CCEEEETHHHHHHHHTTTCEEECC---CEEEEECSEEC-SGGGTTCCSC----CEEEEECSCEEEE--CCTTCEEEEECS
T ss_pred CCEEEECHHHHHHHHHhCCeEeeCCCCccceEEEEecC-cHHhhcCCCc----cEEEEECCCcccc--CCCCCEEEEEEC
Confidence 99999999999999999999999988899987643344 8999999876 8999999999987 999999999998
Q ss_pred CCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCcccccccccCCcceEEEEEecCCCEEEEeccCCCCCCch
Q 046651 166 SADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGIMHSTRPHYGVQFHPESIATCY 245 (392)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vmgi~h~~~P~~GVQFHPEsiat~~ 245 (392)
+ + .++|++|.++++||||||||...++.
T Consensus 145 ~--------------~--------------------------------------~i~ai~~~~~~~~gvQFHPE~~~~~~ 172 (503)
T 2ywb_A 145 E--------------N--------------------------------------PVAAIASPDGRAYGVQFHPEVAHTPK 172 (503)
T ss_dssp S--------------C--------------------------------------SCSEEECTTSSEEEESBCTTSTTSTT
T ss_pred C--------------C--------------------------------------CEEEEEeCCCCEEEEecCCCcccccc
Confidence 7 6 79999998999999999999999999
Q ss_pred hHHHHHHHHHHHH
Q 046651 246 GSKILRNFREITE 258 (392)
Q Consensus 246 G~~I~~NF~~l~~ 258 (392)
|.+||+||+++|.
T Consensus 173 g~~ll~~F~~~~~ 185 (503)
T 2ywb_A 173 GMQILENFLELAG 185 (503)
T ss_dssp HHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHhh
Confidence 9999999998874
|
| >3uow_A GMP synthetase; structural genomics consortium, SGC, purine nucleotide biosy process, ligase; HET: XMP; 2.72A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-33 Score=292.99 Aligned_cols=186 Identities=20% Similarity=0.290 Sum_probs=158.1
Q ss_pred ccEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHH-
Q 046651 4 FVRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLE- 82 (392)
Q Consensus 4 ~~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~- 82 (392)
..||||||++++||++|.+.|++ .|+.+++++++. +++++.. ..+|+|||||||++++......+...+++.
T Consensus 7 ~~~IlilD~Gs~~~~~I~r~lre-~Gv~~eiv~~~~-~~~~i~~-----~~~dgIIlsGGp~s~~~~~~~~~~~~l~~~a 79 (556)
T 3uow_A 7 YDKILVLNFGSQYFHLIVKRLNN-IKIFSETKDYGV-ELKDIKD-----MNIKGVILSGGPYSVTEAGSPHLKKEVFEYF 79 (556)
T ss_dssp CCEEEEEESSCTTHHHHHHHHHH-TTCCEEEEETTC-CGGGTTT-----SCEEEEEECCCSCCTTSTTCCCCCHHHHHHH
T ss_pred CCEEEEEECCCccHHHHHHHHHH-CCCeEEEEECCC-CHHHHhh-----cCCCEEEECCCCCcccccCCcchhHHHHHHh
Confidence 36899999999999999999998 799999999875 4777654 579999999999999765433222333332
Q ss_pred -cCCCCEEEEcHHHHHHHHHhCCeeeecCCCceeceeEEEecCC-------------------------------ccccc
Q 046651 83 -CWDVPILGVCLGHQALGFVHGADIVHAPEPVHGRLSEIVHNGD-------------------------------RLFHD 130 (392)
Q Consensus 83 -~~~iPILGVCLGhQ~La~a~Gg~V~~apep~hG~~s~i~h~g~-------------------------------~LF~~ 130 (392)
..++||||||+|||+|+.++||+|.+.+..++|+.......+. +||++
T Consensus 80 ~~~g~PvLGIC~G~QlLa~~lGG~V~~~~~~E~G~~~l~~~~~~~~~~~p~v~~~~~~~~~mg~~~n~~~~~~~~~Lf~g 159 (556)
T 3uow_A 80 LEKKIPIFGICYGMQEIAVQMNGEVKKSKTSEYGCTDVNILRNDNINNITYCRNFGDSSSAMDLYSNYKLMNETCCLFEN 159 (556)
T ss_dssp HHTTCCEEEETHHHHHHHHHTTCEEEEEEEEEEEEEEEEECCTTGGGGCSGGGGC---CCHHHHHTTSCCCC--CGGGTT
T ss_pred hhcCCCEEEECHHHHHHHHHhCCcEecCCCcccCCcceeeccCcccccccceecccccccccccccccccccccchhhcc
Confidence 2489999999999999999999999998888997654333333 79999
Q ss_pred C-CCCCCcceEEEeeecceeecCCCCCCcEEEEEecCCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCccc
Q 046651 131 I-PSGQNSGFKVVRYHSLIIDADSLPKELIPIAWSNSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRH 209 (392)
Q Consensus 131 i-ps~~~s~f~VvryHSl~V~~~sLP~~l~~iAwt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 209 (392)
+ |.. +.|+++|++.|.. +|++++++|++++ +
T Consensus 160 l~~~~----~~v~~~H~d~V~~--lp~g~~vlA~s~~--------------~---------------------------- 191 (556)
T 3uow_A 160 IKSDI----TTVWMNHNDEVTK--IPENFYLVSSSEN--------------C---------------------------- 191 (556)
T ss_dssp CCSSE----EEEEEEEEEEEEE--CCTTCEEEEEETT--------------E----------------------------
T ss_pred cccCc----eEEEEEccceeec--cCCCcEEEEEeCC--------------C----------------------------
Confidence 9 776 8999999999987 9999999999987 6
Q ss_pred ccccccCCcceEEEEEecCCCEEEEeccCCCCCCchhHHHHHHHH
Q 046651 210 SIYSNRMRREVLMGIMHSTRPHYGVQFHPESIATCYGSKILRNFR 254 (392)
Q Consensus 210 ~~~~~~~~~~~vmgi~h~~~P~~GVQFHPEsiat~~G~~I~~NF~ 254 (392)
.++|+++.++++||||||||+..++.|.+||+||+
T Consensus 192 ----------~i~ai~~~~~~i~GvQFHPE~~~~~~G~~ll~nFl 226 (556)
T 3uow_A 192 ----------LICSIYNKEYNIYGVQYHPEVYESLDGELMFYNFA 226 (556)
T ss_dssp ----------EEEEEEETTTTEEEESSCTTSTTSTTHHHHHHHHH
T ss_pred ----------CEEEEEECCCCEEEEEcCCCCCccccchHHHHHHH
Confidence 89999998999999999999999999999999999
|
| >1gpm_A GMP synthetase, XMP aminase; class I glutamine amidotransferase, N-type ATP pyrophosphata transferase (glutamine amidotransferase); HET: AMP CIT; 2.20A {Escherichia coli} SCOP: c.23.16.1 c.26.2.1 d.52.2.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-33 Score=290.47 Aligned_cols=189 Identities=26% Similarity=0.329 Sum_probs=158.8
Q ss_pred ccEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHHc
Q 046651 4 FVRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLEC 83 (392)
Q Consensus 4 ~~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~~ 83 (392)
.+||+|||++++|+++|.+.|++ .|+.+++++++. +.+++.. ..+|+|||||||++++......+. +.+.+
T Consensus 7 ~~~IlIlD~g~~~~~~i~r~lr~-~G~~~~i~p~~~-~~~~i~~-----~~~dgiILsGGp~s~~~~~~~~~~-~~~~~- 77 (525)
T 1gpm_A 7 KHRILILDFGSQYTQLVARRVRE-LGVYCELWAWDV-TEAQIRD-----FNPSGIILSGGPESTTEENSPRAP-QYVFE- 77 (525)
T ss_dssp SSEEEEEECSCTTHHHHHHHHHH-TTCEEEEEESCC-CHHHHHH-----HCCSEEEECCCSSCTTSTTCCCCC-GGGGT-
T ss_pred CCEEEEEECCCccHHHHHHHHHH-CCCEEEEEECCC-CHHHHhc-----cCCCEEEECCcCccccccCCcchH-HHHHH-
Confidence 47899999999999999999998 799999999876 3677765 247999999999998764322221 22223
Q ss_pred CCCCEEEEcHHHHHHHHHhCCeeeecCCCceeceeEEEecCCcccccCCCCC----CcceEEEeeecceeecCCCCCCcE
Q 046651 84 WDVPILGVCLGHQALGFVHGADIVHAPEPVHGRLSEIVHNGDRLFHDIPSGQ----NSGFKVVRYHSLIIDADSLPKELI 159 (392)
Q Consensus 84 ~~iPILGVCLGhQ~La~a~Gg~V~~apep~hG~~s~i~h~g~~LF~~ips~~----~s~f~VvryHSl~V~~~sLP~~l~ 159 (392)
.++||||||+|||+|+.++||+|.+.+.+++|+.......+++||+++|.+. ...+.|+++|++.|+. ||++++
T Consensus 78 ~g~PvLGIC~G~Qlla~~~GG~V~~~~~~e~G~~~v~~~~~~~L~~~l~~~~~~~~~~~~~v~~~H~~~V~~--lp~g~~ 155 (525)
T 1gpm_A 78 AGVPVFGVCYGMQTMAMQLGGHVEASNEREFGYAQVEVVNDSALVRGIEDALTADGKPLLDVWMSHGDKVTA--IPSDFI 155 (525)
T ss_dssp SSSCEEEETHHHHHHHHHHTCEEECCSSCEEEEEEEEECSCCTTTTTCCSEECTTSCEEEEEEEEECSEEEE--CCTTCE
T ss_pred CCCCEEEEChHHHHHHHHcCCEEEeCCCcccceEEEEeCCCCHhhccCccccccccccceEEEEEccceeee--CCCCCE
Confidence 4899999999999999999999999998999987654456789999998710 0018899999999987 999999
Q ss_pred EEEEecCCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCcccccccccCCcceEEEEEecCCCEEEEeccCC
Q 046651 160 PIAWSNSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGIMHSTRPHYGVQFHPE 239 (392)
Q Consensus 160 ~iAwt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vmgi~h~~~P~~GVQFHPE 239 (392)
++|++++ + .++|++|.++++||||||||
T Consensus 156 v~A~s~~--------------~--------------------------------------~i~ai~~~~~~i~gvQFHPE 183 (525)
T 1gpm_A 156 TVASTES--------------C--------------------------------------PFAIMANEEKRFYGVQFHPE 183 (525)
T ss_dssp EEEECSS--------------C--------------------------------------SCSEEEETTTTEEEESBCTT
T ss_pred EEEECCC--------------C--------------------------------------CEEEEEECCCCEEEEecCCC
Confidence 9999987 6 78999998999999999999
Q ss_pred CCCCchhHHHHHHHHH
Q 046651 240 SIATCYGSKILRNFRE 255 (392)
Q Consensus 240 siat~~G~~I~~NF~~ 255 (392)
...++.|.+||+||+.
T Consensus 184 ~~~~~~g~~ll~nF~~ 199 (525)
T 1gpm_A 184 VTHTRQGMRMLERFVR 199 (525)
T ss_dssp STTSTTHHHHHHHHHH
T ss_pred CCcchhHHHHHHHHHH
Confidence 9999999999999993
|
| >3tqi_A GMP synthase [glutamine-hydrolyzing]; ligase; 2.84A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-33 Score=294.37 Aligned_cols=187 Identities=25% Similarity=0.342 Sum_probs=147.9
Q ss_pred cEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHHcC
Q 046651 5 VRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLECW 84 (392)
Q Consensus 5 ~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~~~ 84 (392)
+||||||++++|+++|.+.|++ .|+.+++++++.. .+++.. ..+|+|||||||++++......+. +.+.+ .
T Consensus 11 ~~I~IlD~g~~~~~~i~r~lr~-~Gv~~~i~p~~~~-~~~i~~-----~~~dgIILsGGp~sv~~~~~~~~~-~~~~~-~ 81 (527)
T 3tqi_A 11 HRILILDFGSQYAQLIARRVRE-IGVYCELMPCDID-EETIRD-----FNPHGIILSGGPETVTLSHTLRAP-AFIFE-I 81 (527)
T ss_dssp SEEEEEECSCTTHHHHHHHHHH-HTCEEEEEETTCC-SSSSTT-----TCCSEEEECCCCC---------CC-CSTTT-S
T ss_pred CeEEEEECCCccHHHHHHHHHH-CCCeEEEEECCCC-HHHHHh-----cCCCEEEECCcCcccccCCChhhH-HHHHh-c
Confidence 4899999999999999999998 6999999988753 556543 357999999999998753222111 11122 4
Q ss_pred CCCEEEEcHHHHHHHHHhCCeeeecCCCceeceeEEEecCCcccccCCCCC----CcceEEEeeecceeecCCCCCCcEE
Q 046651 85 DVPILGVCLGHQALGFVHGADIVHAPEPVHGRLSEIVHNGDRLFHDIPSGQ----NSGFKVVRYHSLIIDADSLPKELIP 160 (392)
Q Consensus 85 ~iPILGVCLGhQ~La~a~Gg~V~~apep~hG~~s~i~h~g~~LF~~ips~~----~s~f~VvryHSl~V~~~sLP~~l~~ 160 (392)
++||||||+|||+|+.++||+|.+.+.+++|+.......+++||++++... ...+.|+++|++.|.. ||+++++
T Consensus 82 ~~PvLGIC~G~Qlla~~lGG~V~~~~~~e~G~~~v~~~~~~~l~~~l~~~~~~~~~~~~~v~~~H~d~v~~--lp~g~~v 159 (527)
T 3tqi_A 82 GCPVLGICYGMQTMAYQLGGKVNRTAKAEFGHAQLRVLNPAFLFDGIEDQVSPQGEPLLDVWMSHGDIVSE--LPPGFEA 159 (527)
T ss_dssp SSCEEEETHHHHHHHHHSSSCBC-----CEEEEEEEESSCTTTTSSCCSBCCTTSCCEEEEEEESSSCBCS--CCTTCEE
T ss_pred CCCEEEEChHHHHHHHHcCCeEEeCCCccccceEEEEcCCChhhcCCccccccccccceEEEEEcccchhc--cCCCCEE
Confidence 999999999999999999999999998999998765566789999998720 0128899999999987 9999999
Q ss_pred EEEecCCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCcccccccccCCcceEEEEEecCCCEEEEeccCCC
Q 046651 161 IAWSNSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGIMHSTRPHYGVQFHPES 240 (392)
Q Consensus 161 iAwt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vmgi~h~~~P~~GVQFHPEs 240 (392)
+|++++ + .++|+++.++++||||||||+
T Consensus 160 ~A~s~~--------------~--------------------------------------~i~ai~~~~~~~~GvQFHPE~ 187 (527)
T 3tqi_A 160 TACTDN--------------S--------------------------------------PLAAMADFKRRFFGLQFHPEV 187 (527)
T ss_dssp EEEETT--------------E--------------------------------------EEEEEECSSSCEEEESBCSSS
T ss_pred EEEeCC--------------C--------------------------------------cEEEEEcCCCCEEEEEecccc
Confidence 999977 6 899999999999999999999
Q ss_pred CCCchhHHHHHHHH
Q 046651 241 IATCYGSKILRNFR 254 (392)
Q Consensus 241 iat~~G~~I~~NF~ 254 (392)
..|++|.+||+||+
T Consensus 188 ~~t~~G~~ll~nF~ 201 (527)
T 3tqi_A 188 THTPQGHRILAHFV 201 (527)
T ss_dssp TTSTTHHHHHHHHH
T ss_pred ccccccchhhhhhh
Confidence 99999999999998
|
| >4gud_A Imidazole glycerol phosphate synthase subunit His; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE 1PE; 1.91A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-33 Score=259.37 Aligned_cols=178 Identities=23% Similarity=0.314 Sum_probs=132.1
Q ss_pred EEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhH---HHHHHHH
Q 046651 6 RTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGI---CLRVLLE 82 (392)
Q Consensus 6 r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi---~~~ll~~ 82 (392)
+|+|||++.+|+.++.++|++ +|++++|+++ .+++.. +|+||| ||||+|....+... ..+.+.+
T Consensus 4 ~I~iiD~g~~n~~si~~al~~-~G~~~~v~~~----~~~l~~-------~D~lil-PG~g~~~~~~~~~~~~~~i~~~~~ 70 (211)
T 4gud_A 4 NVVIIDTGCANISSVKFAIER-LGYAVTISRD----PQVVLA-------ADKLFL-PGVGTASEAMKNLTERDLIELVKR 70 (211)
T ss_dssp CEEEECCCCTTHHHHHHHHHH-TTCCEEEECC----HHHHHH-------CSEEEE-CCCSCHHHHHHHHHHTTCHHHHHH
T ss_pred EEEEEECCCChHHHHHHHHHH-CCCEEEEECC----HHHHhC-------CCEEEE-CCCCCHHHHHHHHHhcChHHHHHH
Confidence 699999999999999999998 7999998753 356644 899999 79998753211100 1122333
Q ss_pred cCCCCEEEEcHHHHHHHHHhCCeeeecCCCcee----------------------ceeEEEecCCcccccCCCCCCcceE
Q 046651 83 CWDVPILGVCLGHQALGFVHGADIVHAPEPVHG----------------------RLSEIVHNGDRLFHDIPSGQNSGFK 140 (392)
Q Consensus 83 ~~~iPILGVCLGhQ~La~a~Gg~V~~apep~hG----------------------~~s~i~h~g~~LF~~ips~~~s~f~ 140 (392)
.++||||||+|||+|+.++|+.+.+.....+| +........++||++++.. +.
T Consensus 71 -~~~PvlGIClG~QlL~~~~g~~~~~~~~~~~gl~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~----~~ 145 (211)
T 4gud_A 71 -VEKPLLGICLGMQLLGKLSEEKGQKADEIVQCLGLVDGEVRLLQTGDLPLPHMGWNTVQVKEGHPLFNGIEPD----AY 145 (211)
T ss_dssp -CCSCEEEETHHHHTTSSEECCC----CCCEECCCSSSCEEEECCCTTSCSSEEEEECCEECTTCGGGTTCCTT----CC
T ss_pred -cCCCEEEEchhHhHHHHHhCCcccccCCccccceeccceEEEcccCCcceeeccceeeeeeccChhhcCCCCC----cE
Confidence 38999999999999999999988776554433 2333445678999999998 88
Q ss_pred EEeeecceeecCCCCCCcEEEEEecCCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCcccccccccCCcce
Q 046651 141 VVRYHSLIIDADSLPKELIPIAWSNSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREV 220 (392)
Q Consensus 141 VvryHSl~V~~~sLP~~l~~iAwt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 220 (392)
++++|++.+. ++...+|++++ + .
T Consensus 146 ~~~~H~~~v~-----~~~~~~a~~~~--------------g--------------------------------------~ 168 (211)
T 4gud_A 146 FYFVHSFAMP-----VGDYTIAQCEY--------------G--------------------------------------Q 168 (211)
T ss_dssp EEEEESEECC-----CCTTEEEEEES--------------S--------------------------------------S
T ss_pred EEEEeeEEeC-----CCCeEEEEecC--------------C--------------------------------------C
Confidence 9999998763 45678999987 5 3
Q ss_pred EEEEEecCCCEEEEeccCCCCCCchhHHHHHHHHHHHHH
Q 046651 221 LMGIMHSTRPHYGVQFHPESIATCYGSKILRNFREITED 259 (392)
Q Consensus 221 vmgi~h~~~P~~GVQFHPEsiat~~G~~I~~NF~~l~~~ 259 (392)
.+++.+.++|+||||||||+ ++++|.+||+||++++.+
T Consensus 169 ~~~~~v~~~~v~GvQFHPE~-s~~~G~~ll~nFl~~~ge 206 (211)
T 4gud_A 169 PFSAAIQAGNYYGVQFHPER-SSKAGARLIQNFLELRGE 206 (211)
T ss_dssp EEEEEEEETTEEEESSCGGG-SHHHHHHHHHHHHHC---
T ss_pred eEEEEEeCCCEEEEEccCEe-cCccHHHHHHHHHHHhcc
Confidence 44444456799999999998 589999999999999864
|
| >1a9x_B Carbamoyl phosphate synthetase (small chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: c.8.3.1 c.23.16.1 PDB: 1bxr_B* 1ce8_B* 1jdb_C* 1cs0_B* 1m6v_B* 1c30_B* 1c3o_B* 1kee_B* 1t36_B* | Back alignment and structure |
|---|
Probab=99.98 E-value=1.5e-31 Score=269.55 Aligned_cols=183 Identities=25% Similarity=0.391 Sum_probs=150.5
Q ss_pred ccEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHHc
Q 046651 4 FVRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLEC 83 (392)
Q Consensus 4 ~~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~~ 83 (392)
.+||++||+ +.++|+.+.|.+ .|+.++|++++. +.+++.. ..+|+||||||||+|... ....+++++.
T Consensus 190 ~~~V~viD~--G~k~ni~r~L~~-~G~~v~vvp~~~-~~e~i~~-----~~~DGliLsGGPgdp~~~---~~~~~~Ir~~ 257 (379)
T 1a9x_B 190 PFHVVAYDF--GAKRNILRMLVD-RGCRLTIVPAQT-SAEDVLK-----MNPDGIFLSNGPGDPAPC---DYAITAIQKF 257 (379)
T ss_dssp CEEEEEEES--SCCHHHHHHHHH-TTEEEEEEETTC-CHHHHHT-----TCCSEEEECCCSBCSTTC---HHHHHHHHHH
T ss_pred CCEEEEEEC--CChHHHHHHHHH-CCCEEEEEeccC-CHHHHhh-----cCCCEEEEeCCCCChHHH---HHHHHHHHHH
Confidence 479999999 677999999998 799999999986 3677754 569999999999999742 3345556552
Q ss_pred --CCCCEEEEcHHHHHHHHHhCCeeeecCCCceeceeEEEecCCcccccCCCCCCcceEEEeeecceeecCCCCCCcEEE
Q 046651 84 --WDVPILGVCLGHQALGFVHGADIVHAPEPVHGRLSEIVHNGDRLFHDIPSGQNSGFKVVRYHSLIIDADSLPKELIPI 161 (392)
Q Consensus 84 --~~iPILGVCLGhQ~La~a~Gg~V~~apep~hG~~s~i~h~g~~LF~~ips~~~s~f~VvryHSl~V~~~sLP~~l~~i 161 (392)
.++||||||+|||+|+.++||++.+.+.+.+|....+.+ ++.++ .+.+.++|++.|+.++||++++++
T Consensus 258 ~~~~~PILGIClG~QLLa~A~GG~v~k~~~gh~g~n~pv~~--------~~~g~--v~its~~H~~aV~~~~Lp~~~~v~ 327 (379)
T 1a9x_B 258 LETDIPVFGICLGHQLLALASGAKTVKMKFGHHGGNHPVKD--------VEKNV--VMITAQNHGFAVDEATLPANLRVT 327 (379)
T ss_dssp TTSCCCEEEETHHHHHHHHHTTCCEEEEEEEEEEEEEEEEE--------TTTTE--EEEEEEEEEEEECSTTCCTTEEEE
T ss_pred HHcCCCEEEECchHHHHHHHhCcEEEecccccccCceeeEe--------cCCCc--EEEEecCccceEecccCCCCeEEE
Confidence 379999999999999999999999998888887666542 23331 133467999999987799999999
Q ss_pred EEe-cCCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCcccccccccCCcceEEEEEecCCCEEEEeccCCC
Q 046651 162 AWS-NSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGIMHSTRPHYGVQFHPES 240 (392)
Q Consensus 162 Awt-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vmgi~h~~~P~~GVQFHPEs 240 (392)
|++ ++ + .+||++|.++|+||||||||+
T Consensus 328 a~s~~D--------------g--------------------------------------~ieai~~~~~pi~gVQFHPE~ 355 (379)
T 1a9x_B 328 HKSLFD--------------G--------------------------------------TLQGIHRTDKPAFSFQGNPEA 355 (379)
T ss_dssp EEETTT--------------C--------------------------------------CEEEEEESSSSEEEESSCTTC
T ss_pred EEeCCC--------------C--------------------------------------cEEEEEECCCCEEEEEeCCcC
Confidence 998 44 5 799999999999999999999
Q ss_pred CCCch-hHHHHHHHHHHHHHh
Q 046651 241 IATCY-GSKILRNFREITEDY 260 (392)
Q Consensus 241 iat~~-G~~I~~NF~~l~~~~ 260 (392)
..++. +.+||+||++++.++
T Consensus 356 ~~~p~d~~~Lf~~Fl~~~~~~ 376 (379)
T 1a9x_B 356 SPGPHDAAPLFDHFIELIEQY 376 (379)
T ss_dssp SSSCSTTTHHHHHHHHHHHHH
T ss_pred CCCcccHHHHHHHHHHHHHHh
Confidence 87764 799999999998765
|
| >2vxo_A GMP synthase [glutamine-hydrolyzing]; proto-oncogene, phosphoprotein, GMP synthetase, guanine monophosphate synthetase, chromosomal rearrangement; HET: XMP; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=7.5e-32 Score=289.82 Aligned_cols=185 Identities=25% Similarity=0.335 Sum_probs=144.4
Q ss_pred cEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHHcC
Q 046651 5 VRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLECW 84 (392)
Q Consensus 5 ~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~~~ 84 (392)
.||+|||++++|+..|.+.|.+ .|+.+++++++.. .+++.. ..+|+|||||||++++......+. +.+.+ .
T Consensus 30 ~~I~VLDfg~q~~~liar~lre-~Gv~~~ivp~~~~-~e~i~~-----~~~dGIILsGGp~s~~~~~~~~~~-~~i~~-~ 100 (697)
T 2vxo_A 30 GAVVILDAGAQYGKVIDRRVRE-LFVQSEIFPLETP-AFAIKE-----QGFRAIIISGGPNSVYAEDAPWFD-PAIFT-I 100 (697)
T ss_dssp CCEEEEEEC--CHHHHHHHHHH-TTCCEEEEETTCC-HHHHHH-----HTCSEEEEEECC-------CCCCC-GGGTT-S
T ss_pred CEEEEEECCCchHHHHHHHHHH-CCCEEEEEECCCC-HHHHhh-----cCCCEEEECCCCCcccCccchhHH-HHHHh-C
Confidence 4799999999999999999998 7999999999874 777755 469999999999998753222111 12223 3
Q ss_pred CCCEEEEcHHHHHHHHHhCCeeeecCCCceeceeEEEecCCcccccCCCCCCcceEEEeeecceeecCCCCCCcEEEEEe
Q 046651 85 DVPILGVCLGHQALGFVHGADIVHAPEPVHGRLSEIVHNGDRLFHDIPSGQNSGFKVVRYHSLIIDADSLPKELIPIAWS 164 (392)
Q Consensus 85 ~iPILGVCLGhQ~La~a~Gg~V~~apep~hG~~s~i~h~g~~LF~~ips~~~s~f~VvryHSl~V~~~sLP~~l~~iAwt 164 (392)
++||||||+|||+|+.++||+|.+.+.+++|+.......+++||++++.. +.|+++|++.|+. +|++++++|++
T Consensus 101 g~PvLGIC~G~QlLa~~lGG~v~~~~~~e~G~~~v~~~~~~~Lf~~l~~~----~~v~~~H~~~V~~--lp~g~~vlA~s 174 (697)
T 2vxo_A 101 GKPVLGICYGMQMMNKVFGGTVHKKSVREDGVFNISVDNTCSLFRGLQKE----EVVLLTHGDSVDK--VADGFKVVARS 174 (697)
T ss_dssp SCCEEEEEHHHHHHHHHTTCCBCC-------CEEEEECTTSGGGTTCCSE----EEECCCSSCCBSS--CCTTCEEEEEE
T ss_pred CCCEEEECHHHHHHHHHhCCeEeecCCCccceEEEEecCCChhhhcCCcc----Ccceeecccceec--CCCCeEEEEEe
Confidence 89999999999999999999999998899998644334678999999876 8999999999986 99999999998
Q ss_pred cCCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCcccccccccCCcceEEEEEecCCCEEEEeccCCCCCCc
Q 046651 165 NSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGIMHSTRPHYGVQFHPESIATC 244 (392)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vmgi~h~~~P~~GVQFHPEsiat~ 244 (392)
++ .++|++|.++++||||||||+..++
T Consensus 175 ~~-----------------------------------------------------~i~ai~~~~~~i~GvQFHPE~~~t~ 201 (697)
T 2vxo_A 175 GN-----------------------------------------------------IVAGIANESKKLYGAQFHPEVGLTE 201 (697)
T ss_dssp TT-----------------------------------------------------EEEEEEETTTTEEEESSCTTSSSST
T ss_pred CC-----------------------------------------------------ceEEEEeCCCCEEEEEecccCCCCc
Confidence 43 8999999999999999999999999
Q ss_pred hhHHHHHHHH-HHH
Q 046651 245 YGSKILRNFR-EIT 257 (392)
Q Consensus 245 ~G~~I~~NF~-~l~ 257 (392)
.|.+||+||+ ++|
T Consensus 202 ~g~~ll~nFl~~i~ 215 (697)
T 2vxo_A 202 NGKVILKNFLYDIA 215 (697)
T ss_dssp THHHHHHHHHTTTT
T ss_pred cchhhhhhhhhccc
Confidence 9999999999 554
|
| >1o1y_A Conserved hypothetical protein TM1158; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG; 1.70A {Thermotoga maritima} SCOP: c.23.16.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=4.2e-29 Score=235.99 Aligned_cols=187 Identities=20% Similarity=0.286 Sum_probs=145.8
Q ss_pred cEEEEEECCCC-chHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCc---hhHHHHHH
Q 046651 5 VRTLLIDNYDS-YTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPED---IGICLRVL 80 (392)
Q Consensus 5 ~r~LlIDnyDS-yT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d---~gi~~~ll 80 (392)
+|+|+|.++.. +..++.+.+.. .|.+++++++++. +++...+ ..+|+|||+|||++++.... +....+++
T Consensus 13 ~~~~~i~~~~~~~~~~i~~~l~~-~G~~v~v~~~~~~--~~~~~~l---~~~Dglil~GG~~~~~~~~~~~~l~~~~~~i 86 (239)
T 1o1y_A 13 VRVLAIRHVEIEDLGMMEDIFRE-KNWSFDYLDTPKG--EKLERPL---EEYSLVVLLGGYMGAYEEEKYPFLKYEFQLI 86 (239)
T ss_dssp CEEEEECSSTTSSCTHHHHHHHH-TTCEEEEECGGGT--CCCSSCG---GGCSEEEECCCSCCTTCTTTCTHHHHHHHHH
T ss_pred eEEEEEECCCCCCchHHHHHHHh-CCCcEEEeCCcCc--cccccch---hcCCEEEECCCCccccCCccChhHHHHHHHH
Confidence 79999999743 56678888887 7999988877542 1122112 46999999999998876432 23345666
Q ss_pred HHc--CCCCEEEEcHHHHHHHHHhCCeeeecCC-CceeceeEEEecCCcccccCCCCCCcceEEEeeecceeecCCCCCC
Q 046651 81 LEC--WDVPILGVCLGHQALGFVHGADIVHAPE-PVHGRLSEIVHNGDRLFHDIPSGQNSGFKVVRYHSLIIDADSLPKE 157 (392)
Q Consensus 81 ~~~--~~iPILGVCLGhQ~La~a~Gg~V~~ape-p~hG~~s~i~h~g~~LF~~ips~~~s~f~VvryHSl~V~~~sLP~~ 157 (392)
++. .++||||||+|||+|+.++||+|.+.+. +.+|........+++||++++.. +.+.++|++.+ . +|++
T Consensus 87 ~~~~~~~~PiLGIC~G~QlL~~alGG~v~~~~~g~~~G~~~v~~~~~~~l~~~~~~~----~~~~~~H~~~v-~--lp~~ 159 (239)
T 1o1y_A 87 EEILKKEIPFLGICLGSQMLAKVLGASVYRGKNGEEIGWYFVEKVSDNKFFREFPDR----LRVFQWHGDTF-D--LPRR 159 (239)
T ss_dssp HHHHHHTCCEEEETHHHHHHHHHTTCCEEECTTCCEEEEEEEEECCCCGGGTTSCSE----EEEEEEESEEE-C--CCTT
T ss_pred HHHHHCCCCEEEEchhHHHHHHHcCCeEecCCCCCccccEEEEECCCCchHHhCCCC----ceeEeecCCcc-c--cCCC
Confidence 552 4899999999999999999999999988 77886533334678999999876 89999999998 3 8999
Q ss_pred cEEEEEecCCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCcccccccccCCcceEEEEEecCCCEEEEecc
Q 046651 158 LIPIAWSNSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGIMHSTRPHYGVQFH 237 (392)
Q Consensus 158 l~~iAwt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vmgi~h~~~P~~GVQFH 237 (392)
++++|++++ + .+||+++.+ +||||||
T Consensus 160 ~~vlA~s~~--------------~--------------------------------------~iea~~~~~--i~gvQfH 185 (239)
T 1o1y_A 160 ATRVFTSEK--------------Y--------------------------------------ENQGFVYGK--AVGLQFH 185 (239)
T ss_dssp CEEEEECSS--------------C--------------------------------------SCSEEEETT--EEEESSB
T ss_pred CEEEEEcCC--------------C--------------------------------------CEEEEEECC--EEEEEeC
Confidence 999999887 5 688999864 9999999
Q ss_pred CCCCCCchhHHHHHHHHHHHHHhhhh
Q 046651 238 PESIATCYGSKILRNFREITEDYWKR 263 (392)
Q Consensus 238 PEsiat~~G~~I~~NF~~l~~~~~~~ 263 (392)
||+. ..+++||+++..+....
T Consensus 186 PE~~-----~~~~~~~~~~~~~~~~~ 206 (239)
T 1o1y_A 186 IEVG-----ARTMKRWIEAYKDELEK 206 (239)
T ss_dssp SSCC-----HHHHHHHHHHTHHHHHH
T ss_pred ccCC-----HHHHHHHHHHhHHHhhh
Confidence 9992 35999999887765433
|
| >3fij_A LIN1909 protein; 11172J, uncharacterized protein, nysgrc, PSI-II, structural genomics, protein structure initiative; 2.30A {Listeria innocua} | Back alignment and structure |
|---|
Probab=99.96 E-value=7.6e-29 Score=235.98 Aligned_cols=180 Identities=15% Similarity=0.200 Sum_probs=138.6
Q ss_pred HHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCC-CCCC--CC--------c---hhHHHHHHHH-
Q 046651 18 YNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPG-SPAC--PE--------D---IGICLRVLLE- 82 (392)
Q Consensus 18 ~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPG-sp~~--~~--------d---~gi~~~ll~~- 82 (392)
.+..+.|.+ +|..|++++.+.. .+ +..+| ..+|+|||+|||+ +|.. .+ + ....++++++
T Consensus 31 ~~~~~~l~~-aG~~pv~lp~~~~-~~-~~~~l---~~~DGlil~GG~~v~P~~yg~~~~~~~~~~~~~rd~~~~~lir~a 104 (254)
T 3fij_A 31 QRYVDAIQK-VGGFPIALPIDDP-ST-AVQAI---SLVDGLLLTGGQDITPQLYLEEPSQEIGAYFPPRDSYEIALVRAA 104 (254)
T ss_dssp HHHHHHHHH-HTCEEEEECCCCG-GG-HHHHH---HTCSEEEECCCSCCCGGGGTCCCCTTCCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-CCCEEEEEeCCCc-hH-HHHHH---hhCCEEEECCCCCCChhhcCCccCcccCCcChhhhHHHHHHHHHH
Confidence 457788877 6999999988764 22 44444 5799999999987 3321 00 1 1224455555
Q ss_pred -cCCCCEEEEcHHHHHHHHHhCCeeeecC--------------CCceeceeEEEecCCcccccCCCCCCcceEEEeeecc
Q 046651 83 -CWDVPILGVCLGHQALGFVHGADIVHAP--------------EPVHGRLSEIVHNGDRLFHDIPSGQNSGFKVVRYHSL 147 (392)
Q Consensus 83 -~~~iPILGVCLGhQ~La~a~Gg~V~~ap--------------ep~hG~~s~i~h~g~~LF~~ips~~~s~f~VvryHSl 147 (392)
..++||||||+|||+|+.++||++.+.. .+..|+.......++.||+.++.. +.|.+||++
T Consensus 105 ~~~~~PiLGIC~G~Qll~~a~Gg~v~~~~~~~~~~~~~h~~~~~~~~g~~~v~~~~~s~l~~~~~~~----~~v~~~H~~ 180 (254)
T 3fij_A 105 LDAGKPIFAICRGMQLVNVALGGTLYQDISQVETKALQHLQRVDEQLGSHTIDIEPTSELAKHHPNK----KLVNSLHHQ 180 (254)
T ss_dssp HHTTCCEEEETHHHHHHHHHTTCCEESSGGGSSSCCCCCBCCSCTTSCCEEEEECTTSSGGGTCCTT----EEECCBCSC
T ss_pred HHcCCCEEEECHHHHHHHHHhCCceecccccccCccccccCCCCCccceEEEEeCCCChHHHhcCCc----EEEEEeccc
Confidence 2599999999999999999999997642 122344333334678999998875 899999999
Q ss_pred eeecCCCCCCcEEEEEecCCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCcccccccccCCcceEEEEEec
Q 046651 148 IIDADSLPKELIPIAWSNSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGIMHS 227 (392)
Q Consensus 148 ~V~~~sLP~~l~~iAwt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vmgi~h~ 227 (392)
.|+. ||++++++|++++ + .++|+++.
T Consensus 181 ~v~~--l~~g~~v~a~s~d--------------g--------------------------------------~ieai~~~ 206 (254)
T 3fij_A 181 FIKK--LAPSFKVTARTAD--------------G--------------------------------------MIEAVEGD 206 (254)
T ss_dssp EESS--CCSSEEEEEEETT--------------C--------------------------------------CEEEEEES
T ss_pred hhhc--cCCCcEEEEEeCC--------------C--------------------------------------cEEEEEec
Confidence 9986 9999999999988 7 89999999
Q ss_pred -CCC-EEEEeccCCCCCC--chhHHHHHHHHHHHHHhh
Q 046651 228 -TRP-HYGVQFHPESIAT--CYGSKILRNFREITEDYW 261 (392)
Q Consensus 228 -~~P-~~GVQFHPEsiat--~~G~~I~~NF~~l~~~~~ 261 (392)
+.| +||||||||+..+ ..|++||+||++++..+.
T Consensus 207 ~~~~~~~gvQfHPE~~~~~~~~~~~lf~~Fv~~~~~~~ 244 (254)
T 3fij_A 207 NLPSWYLGVQWHPELMFQTDPESEQLFQALVDESKKTM 244 (254)
T ss_dssp SCSSCEEEESSCGGGTGGGCHHHHHHHHHHHHHHHSCC
T ss_pred CCCCeEEEEEcCCccCCCCCchHHHHHHHHHHHHHHHH
Confidence 887 9999999999775 678999999999997653
|
| >3l7n_A Putative uncharacterized protein; glutamine amidotransferase, transferas; 2.70A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=99.96 E-value=6.8e-29 Score=233.51 Aligned_cols=182 Identities=22% Similarity=0.314 Sum_probs=142.9
Q ss_pred cEEEEEECCCCch-HHHHHHHHHhCCCCeEEEeCCCCC--HHHHHhhhcccCCcCEEEECCCCCCCCCC-Cc---h--hH
Q 046651 5 VRTLLIDNYDSYT-YNIYQELSTINGVPPVVVRNDEWT--WRDICRYLYEENAFDNIVISPGPGSPACP-ED---I--GI 75 (392)
Q Consensus 5 ~r~LlIDnyDSyT-~nl~q~L~~v~G~~pvVV~nd~~~--~eel~~~l~e~~~fDgIVISpGPGsp~~~-~d---~--gi 75 (392)
|||++|.+...-. .+|.+.+.+ .|.++.+++..... .+++ ..+|+|||+|||++|... .+ + ..
T Consensus 1 m~i~vi~h~~~e~~g~~~~~l~~-~g~~~~~~~~~~~~~~p~~~-------~~~d~lii~GGp~~~~~~~~~~~~~~~~~ 72 (236)
T 3l7n_A 1 MRIHFILHETFEAPGAYLAWAAL-RGHDVSMTKVYRYEKLPKDI-------DDFDMLILMGGPQSPSSTKKEFPYYDAQA 72 (236)
T ss_dssp CEEEEEECCTTSCCHHHHHHHHH-TTCEEEEEEGGGTCCCCSCG-------GGCSEEEECCCSSCTTCCTTTCTTCCHHH
T ss_pred CeEEEEeCCCCCCchHHHHHHHH-CCCeEEEEeeeCCCCCCCCc-------cccCEEEECCCCCCcccccccCcccchHH
Confidence 8999999876544 456676666 89999998764321 1122 469999999999998642 22 1 22
Q ss_pred HHHHHHH--cCCCCEEEEcHHHHHHHHHhCCeeeecCCCceeceeEEEec----CCcccccCCCCCCcceEEEeeeccee
Q 046651 76 CLRVLLE--CWDVPILGVCLGHQALGFVHGADIVHAPEPVHGRLSEIVHN----GDRLFHDIPSGQNSGFKVVRYHSLII 149 (392)
Q Consensus 76 ~~~ll~~--~~~iPILGVCLGhQ~La~a~Gg~V~~apep~hG~~s~i~h~----g~~LF~~ips~~~s~f~VvryHSl~V 149 (392)
..++|++ ..++||||||+|||+|+.++||+|.+.+.+.+|+.. |... .++||.++|.. |.+.++|++.
T Consensus 73 ~~~~i~~~~~~~~PvLGIClG~QlL~~~~Gg~v~~~~~~~~G~~~-v~~~~~~~~~~l~~~~~~~----~~v~~~H~~~- 146 (236)
T 3l7n_A 73 EVKLIQKAAKSEKIIVGVCLGAQLMGVAYGADYLHSPKKEIGNYL-ISLTEAGKMDSYLSDFSDD----LLVGHWHGDM- 146 (236)
T ss_dssp HHHHHHHHHHTTCEEEEETHHHHHHHHHTTCCCEEEEEEEEEEEE-EEECTTGGGCGGGTTSCSE----EEEEEEEEEE-
T ss_pred HHHHHHHHHHcCCCEEEEchHHHHHHHHhCCEEecCCCceeeeEE-EEEccCcccChHHhcCCCC----cEEEEecCCc-
Confidence 4566665 259999999999999999999999999989999874 4443 37899999987 9999999986
Q ss_pred ecCCCCCCcEEEEEecCCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCcccccccccCCcceEEEEEecCC
Q 046651 150 DADSLPKELIPIAWSNSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGIMHSTR 229 (392)
Q Consensus 150 ~~~sLP~~l~~iAwt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vmgi~h~~~ 229 (392)
. .+|++++++|++++ + .++|+++.+
T Consensus 147 ~--~lp~~~~vla~s~~--------------~--------------------------------------~~~a~~~~~- 171 (236)
T 3l7n_A 147 P--GLPDKAQVLAISQG--------------C--------------------------------------PRQIIKFGP- 171 (236)
T ss_dssp C--CCCTTCEEEEECSS--------------C--------------------------------------SCSEEEEET-
T ss_pred c--cCCChheEEEECCC--------------C--------------------------------------CEEEEEECC-
Confidence 2 39999999999987 6 678888764
Q ss_pred CEEEEeccCCCCCCchhHHHHHHHHHHHHHh
Q 046651 230 PHYGVQFHPESIATCYGSKILRNFREITEDY 260 (392)
Q Consensus 230 P~~GVQFHPEsiat~~G~~I~~NF~~l~~~~ 260 (392)
++||||||||+. ..++++|++...++
T Consensus 172 ~v~gvQfHPE~~-----~~~~~~~~~~~~~~ 197 (236)
T 3l7n_A 172 KQYAFQCHLEFT-----PELVAALIAQEDDL 197 (236)
T ss_dssp TEEEESSBSSCC-----HHHHHHHHHHCSCH
T ss_pred CEEEEEeCCCCC-----HHHHHHHHHhhhhh
Confidence 899999999993 68999999876543
|
| >2ywj_A Glutamine amidotransferase subunit PDXT; uncharacterized conserved protein, structural genomics; 1.90A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.96 E-value=8.3e-30 Score=230.06 Aligned_cols=174 Identities=18% Similarity=0.251 Sum_probs=128.7
Q ss_pred cEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCC--chhHHHHHHHH
Q 046651 5 VRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPE--DIGICLRVLLE 82 (392)
Q Consensus 5 ~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~--d~gi~~~ll~~ 82 (392)
|||+|||++++|+.++ +.|.+ .|.++++++++ +++ ..+|+|||+|||+++.... +.++ .+.++
T Consensus 1 m~i~vl~~~g~~~~~~-~~l~~-~G~~~~~~~~~----~~~-------~~~dglil~GG~~~~~~~~~~~~~~-~~~i~- 65 (186)
T 2ywj_A 1 MIIGVLAIQGDVEEHE-EAIKK-AGYEAKKVKRV----EDL-------EGIDALIIPGGESTAIGKLMKKYGL-LEKIK- 65 (186)
T ss_dssp CEEEEECSSSCCHHHH-HHHHH-TTSEEEEECSG----GGG-------TTCSEEEECCSCHHHHHHHHHHTTH-HHHHH-
T ss_pred CEEEEEecCcchHHHH-HHHHH-CCCEEEEECCh----HHh-------ccCCEEEECCCCchhhhhhhhccCH-HHHHH-
Confidence 8999999999999765 88887 69999888752 222 5689999999998764211 1222 24455
Q ss_pred cCCCCEEEEcHHHHHHHHHhCCeeeecCCCceeceeEE-------EecCCcccccCCCCCCcceEEEeeecceeecCCC-
Q 046651 83 CWDVPILGVCLGHQALGFVHGADIVHAPEPVHGRLSEI-------VHNGDRLFHDIPSGQNSGFKVVRYHSLIIDADSL- 154 (392)
Q Consensus 83 ~~~iPILGVCLGhQ~La~a~Gg~V~~apep~hG~~s~i-------~h~g~~LF~~ips~~~s~f~VvryHSl~V~~~sL- 154 (392)
..++||||||+|||+|+.++||++.... ..++..... .|..+.+|.++ .. +.++++|++.|+. +
T Consensus 66 ~~~~PilGIC~G~Qll~~~~gg~~~~lg-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----~~~~~~H~~~v~~--l~ 137 (186)
T 2ywj_A 66 NSNLPILGTCAGMVLLSKGTGINQILLE-LMDITVKRNAYGRQVDSFEKEIEFKDL-GK----VYGVFIRAPVVDK--IL 137 (186)
T ss_dssp TCCCCEEEETHHHHHHSSCCSSCCCCCC-CSSEEEETTTTCSSSCCEEEEEEETTT-EE----EEEEESSCCEEEE--EC
T ss_pred hcCCcEEEECHHHHHHHHHhCCCcCccC-CCceeEEeccCCCcccceecccccccC-Cc----EEEEEEecceeee--cC
Confidence 4589999999999999999999854321 122211100 01122466666 33 8899999999986 8
Q ss_pred CCCcEEEEEecCCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCcccccccccCCcceEEEEEecCCCEEEE
Q 046651 155 PKELIPIAWSNSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGIMHSTRPHYGV 234 (392)
Q Consensus 155 P~~l~~iAwt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vmgi~h~~~P~~GV 234 (392)
|++++++|++ + + .++|+++ +++|||
T Consensus 138 ~~~~~v~a~s-d--------------~--------------------------------------~~~a~~~--~~~~gv 162 (186)
T 2ywj_A 138 SDDVEVIARD-G--------------D--------------------------------------KIVGVKQ--GKYMAL 162 (186)
T ss_dssp CTTCEEEEEE-T--------------T--------------------------------------EEEEEEE--TTEEEE
T ss_pred CCCeEEEEEE-C--------------C--------------------------------------EEEEEee--CCEEEE
Confidence 9999999999 5 4 7999987 479999
Q ss_pred eccCCCCCCchhHHHHHHHHHHHH
Q 046651 235 QFHPESIATCYGSKILRNFREITE 258 (392)
Q Consensus 235 QFHPEsiat~~G~~I~~NF~~l~~ 258 (392)
|||||.. ..|.+||+||++++.
T Consensus 163 QfHPE~~--~~g~~l~~~F~~~~~ 184 (186)
T 2ywj_A 163 SFHPELS--EDGYKVYKYFVENCV 184 (186)
T ss_dssp SSCGGGS--TTHHHHHHHHHHHHT
T ss_pred ECCCCcC--CchhHHHHHHHHHHh
Confidence 9999973 359999999999874
|
| >3m3p_A Glutamine amido transferase; structural genomics, nysgrc, PSI-2; HET: MSE; 1.30A {Methylobacillus flagellatus} PDB: 3l83_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.1e-28 Score=235.77 Aligned_cols=180 Identities=17% Similarity=0.194 Sum_probs=142.3
Q ss_pred ccEEEEEECCC-CchHHHHHHHHHhCCCCeEEEeCCCCC--HHHHHhhhcccCCcCEEEECCCCCCCCCCC-chhHHHHH
Q 046651 4 FVRTLLIDNYD-SYTYNIYQELSTINGVPPVVVRNDEWT--WRDICRYLYEENAFDNIVISPGPGSPACPE-DIGICLRV 79 (392)
Q Consensus 4 ~~r~LlIDnyD-SyT~nl~q~L~~v~G~~pvVV~nd~~~--~eel~~~l~e~~~fDgIVISpGPGsp~~~~-d~gi~~~l 79 (392)
.|+||+|++.+ +....+.++|.+ .|.++++++.+..+ .+++ ..+|+|||+|||+++.... .+....++
T Consensus 3 ~~~vliiqh~~~e~~~~i~~~l~~-~G~~v~v~~~~~~~~~p~~~-------~~~d~lIl~GGp~~~~d~~~~~~~~~~~ 74 (250)
T 3m3p_A 3 LKPVMIIQFSASEGPGHFGDFLAG-EHIPFQVLRMDRSDPLPAEI-------RDCSGLAMMGGPMSANDDLPWMPTLLAL 74 (250)
T ss_dssp CCCEEEEESSSSCCCHHHHHHHHH-TTCCEEEEEGGGTCCCCSCG-------GGSSEEEECCCSSCTTSCCTTHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH-CCCeEEEEeccCCCcCcCcc-------ccCCEEEECCCCCcccccchHHHHHHHH
Confidence 57899999875 567889999987 79999999865421 1222 4599999999999987532 23334455
Q ss_pred HHH--cCCCCEEEEcHHHHHHHHHhCCeeeecCCCceeceeEEEec----CCcccccCCCCCCcceEEEeeecceeecCC
Q 046651 80 LLE--CWDVPILGVCLGHQALGFVHGADIVHAPEPVHGRLSEIVHN----GDRLFHDIPSGQNSGFKVVRYHSLIIDADS 153 (392)
Q Consensus 80 l~~--~~~iPILGVCLGhQ~La~a~Gg~V~~apep~hG~~s~i~h~----g~~LF~~ips~~~s~f~VvryHSl~V~~~s 153 (392)
|++ ..++||||||+|||+|+.++||+|.+.+.+++|+.. |... .++|| ++|.. +.|.+||++.| .
T Consensus 75 i~~~~~~~~PvlGIC~G~Qll~~~lGG~V~~~~~~e~G~~~-v~~~~~~~~~~l~-g~~~~----~~v~~~H~~~v-~-- 145 (250)
T 3m3p_A 75 IRDAVAQRVPVIGHCLGGQLLAKAMGGEVTDSPHAEIGWVR-AWPQHVPQALEWL-GTWDE----LELFEWHYQTF-S-- 145 (250)
T ss_dssp HHHHHHHTCCEEEETHHHHHHHHHTTCCEEEEEEEEEEEEE-EEECSSHHHHHHH-SCSSC----EEEEEEEEEEE-C--
T ss_pred HHHHHHcCCCEEEECHHHHHHHHHhCCEEEeCCCCceeeEE-EEEecCCCCcccc-cCCCc----cEEEEEcccee-e--
Confidence 554 248999999999999999999999999999999875 4433 26799 88887 99999999999 3
Q ss_pred CCCCcEEEEEecCCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCcccccccccCCcceEEEEEecCCCEEE
Q 046651 154 LPKELIPIAWSNSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGIMHSTRPHYG 233 (392)
Q Consensus 154 LP~~l~~iAwt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vmgi~h~~~P~~G 233 (392)
||++++++|++++ + .++|+++.+ ++||
T Consensus 146 lp~~~~vlA~s~~--------------~--------------------------------------~~~a~~~~~-~~~G 172 (250)
T 3m3p_A 146 IPPGAVHILRSEH--------------C--------------------------------------ANQAYVLDD-LHIG 172 (250)
T ss_dssp CCTTEEEEEEETT--------------E--------------------------------------EEEEEEETT-TEEE
T ss_pred cCCCCEEEEEeCC--------------C--------------------------------------CEEEEEECC-eeEE
Confidence 9999999999988 6 899999876 5999
Q ss_pred EeccCCCCCCchhHHHHHHHH
Q 046651 234 VQFHPESIATCYGSKILRNFR 254 (392)
Q Consensus 234 VQFHPEsiat~~G~~I~~NF~ 254 (392)
||||||. ....+..++++|.
T Consensus 173 vQfHPE~-~~~~~~~~l~~~~ 192 (250)
T 3m3p_A 173 FQCHIEM-QAHMVREWCSISP 192 (250)
T ss_dssp ESSCTTC-CHHHHHHHHHHCG
T ss_pred EEeCCcC-CHHHHHHHHHhhH
Confidence 9999998 4344566666554
|
| >2w7t_A CTP synthetase, putative cytidine triphosphate synthase; glutaminase domain, trypsanosoma brucei, ligase, acivicin; HET: 5CS; 2.10A {Trypanosoma brucei} | Back alignment and structure |
|---|
Probab=99.96 E-value=4.3e-30 Score=247.68 Aligned_cols=196 Identities=20% Similarity=0.200 Sum_probs=138.5
Q ss_pred cEEEEE--------ECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHH-----HHhhhcccCCcCEEEECCCCCCCCCCC
Q 046651 5 VRTLLI--------DNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRD-----ICRYLYEENAFDNIVISPGPGSPACPE 71 (392)
Q Consensus 5 ~r~LlI--------DnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~ee-----l~~~l~e~~~fDgIVISpGPGsp~~~~ 71 (392)
+||.|| |||+|++++|.++... .+++++|++++..+.++ +...+ ..+|+|||+||||++...
T Consensus 9 ~~Iaivg~y~~~~~dny~S~~~aL~~~g~~-~~~~v~v~~~~~~~~~~~~~~~~~~~~---~~~dgiil~GG~~~~~~~- 83 (273)
T 2w7t_A 9 VRIAFVGKYLQDAGDTYFSVLQCFEHCQIA-LQVRLDILYVDSEELEGPNADEARKAL---LGCDGIFVPGGFGNRGVD- 83 (273)
T ss_dssp EEEEEEECCHHHHTTTTHHHHHHHHHHHHH-HTCCEEEEEEEGGGGSSTTTHHHHHHH---HTCSEEEECCCCTTTTHH-
T ss_pred CEEEEEeCCCcCCchHHHHHHHHHHHHHHh-cCCceEEeccChhhcccccchhHHHHH---hhCCEEEecCCCCCcCch-
Confidence 566666 4667778999998877 58899999888643211 21222 469999999999885432
Q ss_pred chhHHHHHHHHc--CCCCEEEEcHHHHHHHHHhCCeeee---cC--C-------Cc-----eec----------eeEEEe
Q 046651 72 DIGICLRVLLEC--WDVPILGVCLGHQALGFVHGADIVH---AP--E-------PV-----HGR----------LSEIVH 122 (392)
Q Consensus 72 d~gi~~~ll~~~--~~iPILGVCLGhQ~La~a~Gg~V~~---ap--e-------p~-----hG~----------~s~i~h 122 (392)
+ ..++++++ .++||||||+|||+|+.++||+|.. ++ | +. |+. ...+..
T Consensus 84 --~-~~~~i~~~~~~~~PilGIC~G~Qll~~a~Gg~v~~~~~~~s~E~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~v~~ 160 (273)
T 2w7t_A 84 --G-KCAAAQVARMNNIPYFGVXLGMQVAVIELSRNVVGWSDANSEEFNKESTHQVVRIMDCDRNKMGANMHLGACDVYI 160 (273)
T ss_dssp --H-HHHHHHHHHHHTCCEEEETHHHHHHHHHHHHHTTCCTTCEETTTCTTCSCEEEECCGGGBCSSCBCCEEEEEEEEE
T ss_pred --h-HHHHHHHHHHCCCcEEEECcCHHHHHHHHhCccccccCCchhhcccccCCCceeeccccccccCCcccccceEEEE
Confidence 2 33444431 3899999999999999999999852 11 1 11 111 123343
Q ss_pred --cCCcccccCCCCCCcceEEEee--ecceeecC---CC-CCCcEEEEEecCCCCccccccCCCCCCCcccccchhhhhh
Q 046651 123 --NGDRLFHDIPSGQNSGFKVVRY--HSLIIDAD---SL-PKELIPIAWSNSADGFSYLGTLQSGEIPDAYQSQSRQKIL 194 (392)
Q Consensus 123 --~g~~LF~~ips~~~s~f~Vvry--HSl~V~~~---sL-P~~l~~iAwt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (392)
.++.|++.++.. +.|++| |||.|+++ .| |++++++||+.+ +
T Consensus 161 ~~~~s~l~~~~~~~----~~v~~~H~Hsy~v~~~~v~~l~~~g~~v~A~s~d--------------~------------- 209 (273)
T 2w7t_A 161 VEKSSIMAKIYSKS----NIVVERHRHRYEVNTAYFEDLRKAGLCISAVTDP--------------T------------- 209 (273)
T ss_dssp CCTTSHHHHHTTTC----SEEEEEEEECCEECGGGHHHHHHTTCEEEEESCT--------------T-------------
T ss_pred ecCCcHHHHHhCCC----ceEEeecccccccCHHHHHhhccCCcEEEEEcCC--------------c-------------
Confidence 367787777765 667664 68888754 26 789999999876 2
Q ss_pred cccccccccCCCcccccccccCC-cceEEEEEecCCCEE-EEeccCCCCCCch-hHHHHHHHHHHHHHh
Q 046651 195 LSDISTQIKNGSYRHSIYSNRMR-REVLMGIMHSTRPHY-GVQFHPESIATCY-GSKILRNFREITEDY 260 (392)
Q Consensus 195 ~~~~~~~~~~g~~~~~~~~~~~~-~~~vmgi~h~~~P~~-GVQFHPEsiat~~-G~~I~~NF~~l~~~~ 260 (392)
.+ ..++|||++.++|+| |||||||+..++. +++||+||++++.++
T Consensus 210 ---------------------~~~g~~ieaie~~~~p~~~GvQfHPE~~~~~~~~~~l~~~Fv~~~~~~ 257 (273)
T 2w7t_A 210 ---------------------FSSRCRVEAVENPSLRFFLAVQFHPEFISTPMDPAPTYLSFMAAAAKK 257 (273)
T ss_dssp ---------------------CCTTCCEEEEECTTSSSEEEESSCGGGSCBTTBCCHHHHHHHHHHHTC
T ss_pred ---------------------CCCCCeEEEEEcCCCCeEEEEeCCCCcCCCCCchHHHHHHHHHHHHHH
Confidence 00 127999999999865 9999999988765 599999999998754
|
| >1gpw_B Amidotransferase HISH; lyase/transferase, complex (lyase/transferase), histidine biosynthesis, glutaminase, glutamine amidotransferase; 2.4A {Thermotoga maritima} SCOP: c.23.16.1 PDB: 1k9v_F 1kxj_A 2wjz_B | Back alignment and structure |
|---|
Probab=99.95 E-value=2.1e-28 Score=223.46 Aligned_cols=177 Identities=20% Similarity=0.240 Sum_probs=126.2
Q ss_pred cEEEEEECCCCchHHHHHHHHHhCC-----CCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhH----
Q 046651 5 VRTLLIDNYDSYTYNIYQELSTING-----VPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGI---- 75 (392)
Q Consensus 5 ~r~LlIDnyDSyT~nl~q~L~~v~G-----~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi---- 75 (392)
|||+|||...++..++.+.|.+ .| ++++++++++ + ..+|+||| ||||++.. +...
T Consensus 1 m~I~iid~~~g~~~s~~~~l~~-~G~~~~~~~~~~~~~~~----~--------~~~dglil-pG~g~~~~--~~~~l~~~ 64 (201)
T 1gpw_B 1 MRIGIISVGPGNIMNLYRGVKR-ASENFEDVSIELVESPR----N--------DLYDLLFI-PGVGHFGE--GMRRLREN 64 (201)
T ss_dssp CEEEEECCSSSCCHHHHHHHHH-HSTTBSSCEEEEECSCC----S--------SCCSEEEE-CCCSCSHH--HHHHHHHT
T ss_pred CEEEEEecCCchHHHHHHHHHH-cCCCCCceEEEEECCCc----c--------cCCCEEEE-CCCCcHHH--HHHHHHhh
Confidence 8999999766666777788988 47 8898888643 1 24899999 77787642 1111
Q ss_pred -HHHHHHH--cCCCCEEEEcHHHHHHHHHhC--CeeeecCCCceeceeEE-----EecC-CcccccCC-CCCCcceEEEe
Q 046651 76 -CLRVLLE--CWDVPILGVCLGHQALGFVHG--ADIVHAPEPVHGRLSEI-----VHNG-DRLFHDIP-SGQNSGFKVVR 143 (392)
Q Consensus 76 -~~~ll~~--~~~iPILGVCLGhQ~La~a~G--g~V~~apep~hG~~s~i-----~h~g-~~LF~~ip-s~~~s~f~Vvr 143 (392)
..++|++ ..++||||||+|||+|+.++| +. .......+|..... .|.+ +.++...+ .. +.+++
T Consensus 65 ~~~~~i~~~~~~~~PilGIC~G~Qll~~~~g~~G~-~~~l~~~~g~v~~~~~~~~~~~g~~~l~~~~~~~~----~~v~~ 139 (201)
T 1gpw_B 65 DLIDFVRKHVEDERYVVGVCLGMQLLFEESEEAPG-VKGLSLIEGNVVKLRSRRLPHMGWNEVIFKDTFPN----GYYYF 139 (201)
T ss_dssp TCHHHHHHHHHTTCEEEEETHHHHTTSSEETTEEE-EECCCSSSEEEEECCCSSCSEEEEEEEEESSSSCC----EEEEE
T ss_pred CHHHHHHHHHHcCCeEEEEChhHHHHHHhhccCCC-CCCcceeeeEEEEcCCCCCCcccceeeEeccCCCC----CeEEE
Confidence 2345554 248999999999999999996 33 22222223332221 1222 35555555 33 89999
Q ss_pred eecceeecCCCCCCcEEEEEecCCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCcccccccccCCcceEEE
Q 046651 144 YHSLIIDADSLPKELIPIAWSNSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMG 223 (392)
Q Consensus 144 yHSl~V~~~sLP~~l~~iAwt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vmg 223 (392)
||++.|++ + +++++|++++. + ..++|
T Consensus 140 ~H~~~v~~--~--~~~vla~s~~~-------------g-------------------------------------~~~~a 165 (201)
T 1gpw_B 140 VHTYRAVC--E--EEHVLGTTEYD-------------G-------------------------------------EIFPS 165 (201)
T ss_dssp EESEEEEE--C--GGGEEEEEEET-------------T-------------------------------------EEEEE
T ss_pred ECcceecc--C--CCEEEEEEccC-------------C-------------------------------------ceEEE
Confidence 99999986 4 68899998640 1 16899
Q ss_pred EEecCCCEEEEeccCCCCCCchhHHHHHHHHHHHH
Q 046651 224 IMHSTRPHYGVQFHPESIATCYGSKILRNFREITE 258 (392)
Q Consensus 224 i~h~~~P~~GVQFHPEsiat~~G~~I~~NF~~l~~ 258 (392)
+++.+ ++||||||||+. ++.|++||+||++++.
T Consensus 166 ~~~~~-~i~gvQfHPE~~-~~~~~~l~~~f~~~~~ 198 (201)
T 1gpw_B 166 AVRKG-RILGFQFHPEKS-SKIGRKLLEKVIECSL 198 (201)
T ss_dssp EEEET-TEEEESSCGGGS-HHHHHHHHHHHHHHSS
T ss_pred EEECC-CEEEEECCCccc-CHhHHHHHHHHHHHhh
Confidence 99876 899999999996 7889999999999864
|
| >3d54_D Phosphoribosylformylglycinamidine synthase 1; alpha-beta structure, ATP-binding, cytoplasm, ligase, nucleotide-binding, purine biosynthesis; HET: CYG ADP; 3.50A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.94 E-value=6.2e-27 Score=214.28 Aligned_cols=188 Identities=15% Similarity=0.233 Sum_probs=138.8
Q ss_pred cEEEEEECCCCch-HHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCC-----chhHHHH
Q 046651 5 VRTLLIDNYDSYT-YNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPE-----DIGICLR 78 (392)
Q Consensus 5 ~r~LlIDnyDSyT-~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~-----d~gi~~~ 78 (392)
|||+||++++.++ +++++.|.+ .|.++++++.++ ++ ..+|+|||+||++.+.... ......+
T Consensus 3 ~~i~il~~~~~~~~~~~~~~l~~-~g~~~~~~~~~~----~~-------~~~d~lil~Gg~~~~~~~~~~~~~~~~~~~~ 70 (213)
T 3d54_D 3 PRACVVVYPGSNCDRDAYHALEI-NGFEPSYVGLDD----KL-------DDYELIILPGGFSYGDYLRPGAVAAREKIAF 70 (213)
T ss_dssp CEEEEECCTTEEEHHHHHHHHHT-TTCEEEEECTTC----CC-------SSCSEEEECEECGGGGCSSTTHHHHTSTTHH
T ss_pred cEEEEEEcCCCCccHHHHHHHHH-CCCEEEEEecCC----Cc-------ccCCEEEECCCCchhhhhccccccccHHHHH
Confidence 6899999998886 899999988 699999987653 11 5699999987765443310 0111234
Q ss_pred HHHH--cCCCCEEEEcHHHHHHHHH--hCCeeeecCCC-ceeceeEEEe--cCCcccccCCCCCCcceEEEeee---cce
Q 046651 79 VLLE--CWDVPILGVCLGHQALGFV--HGADIVHAPEP-VHGRLSEIVH--NGDRLFHDIPSGQNSGFKVVRYH---SLI 148 (392)
Q Consensus 79 ll~~--~~~iPILGVCLGhQ~La~a--~Gg~V~~apep-~hG~~s~i~h--~g~~LF~~ips~~~s~f~VvryH---Sl~ 148 (392)
+|++ ..++||||||+|+|+|+.+ ++++|.+.+.. .|.....|.. .+++||++++.+. .+.+.++| ++.
T Consensus 71 ~l~~~~~~~~pilgIC~G~qlLa~aGll~g~v~~~~~~~~~~g~~~v~~~~~~~~l~~~~~~~~--~~~~~~~H~~~s~~ 148 (213)
T 3d54_D 71 EIAKAAERGKLIMGICNGFQILIEMGLLKGALLQNSSGKFICKWVDLIVENNDTPFTNAFEKGE--KIRIPIAHGFGRYV 148 (213)
T ss_dssp HHHHHHHHTCEEEECHHHHHHHHHHTSSCSEEECCSSSSCBCCEEEEEECCCSSTTSTTSCTTC--EEEEECCBSSCEEE
T ss_pred HHHHHHHCCCEEEEECHHHHHHHHcCCCCCCeecCCCCceEeeeEEEEeCCCCCceeeccCCCC--EEEEEeecCceEEE
Confidence 4443 2389999999999999999 99999987643 2443445554 4789999998641 16677799 776
Q ss_pred eecCCCCCCcEEEEEecCCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCcccccccccCCcceEEEEEecC
Q 046651 149 IDADSLPKELIPIAWSNSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGIMHST 228 (392)
Q Consensus 149 V~~~sLP~~l~~iAwt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vmgi~h~~ 228 (392)
+. |++++++|++++++ + ....++|+.+.+
T Consensus 149 ~~----~~~~~~~a~~~~~n------------g-----------------------------------~~~~i~a~~~~~ 177 (213)
T 3d54_D 149 KI----DDVNVVLRYVKDVN------------G-----------------------------------SDERIAGVLNES 177 (213)
T ss_dssp CS----SCCEEEEEESSCSS------------C-----------------------------------CGGGEEEEECSS
T ss_pred ec----CCCcEEEEEcCCCC------------C-----------------------------------CccceeEEEcCC
Confidence 63 36789999986511 1 002799999888
Q ss_pred CCEEEEeccCCCCC-----CchhHHHHHHHHHHH
Q 046651 229 RPHYGVQFHPESIA-----TCYGSKILRNFREIT 257 (392)
Q Consensus 229 ~P~~GVQFHPEsia-----t~~G~~I~~NF~~l~ 257 (392)
.++||||||||+.. ++.|++||+||++++
T Consensus 178 ~~~~gvQfHPE~~~~~~~~~~~g~~l~~~f~~~~ 211 (213)
T 3d54_D 178 GNVFGLMPHPERAVEELIGGEDGKKVFQSILNYL 211 (213)
T ss_dssp SCEEEECSCSTTTTSTTTTCSTTSHHHHHHHHHC
T ss_pred CCEEEEeCCHHHhcCHhhhcCccHHHHHHHHHHh
Confidence 89999999999977 578999999999875
|
| >1l9x_A Gamma-glutamyl hydrolase; 1.60A {Homo sapiens} SCOP: c.23.16.1 | Back alignment and structure |
|---|
Probab=99.94 E-value=4.3e-28 Score=238.21 Aligned_cols=201 Identities=17% Similarity=0.205 Sum_probs=142.5
Q ss_pred cEEEEEECCCC--------chH---HHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCch
Q 046651 5 VRTLLIDNYDS--------YTY---NIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDI 73 (392)
Q Consensus 5 ~r~LlIDnyDS--------yT~---nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~ 73 (392)
++|.|..+... ++| ++.++|.+ .|..+++++++. +.+++..++ ..+|+|||+|||+++... .+
T Consensus 31 P~IGI~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~G~~~~vv~~~~-~~~~i~~~l---~~~dglil~GG~~~v~p~-~~ 104 (315)
T 1l9x_A 31 PIIGILMQKCRNKVMKNYGRYYIAASYVKYLES-AGARVVPVRLDL-TEKDYEILF---KSINGILFPGGSVDLRRS-DY 104 (315)
T ss_dssp CEEEEECEECCSHHHHTTCSEEEEHHHHHHHHH-TTCEEEEECSSC-CHHHHHHHH---HHSSEEEECCCCCCTTTC-HH
T ss_pred CEEEEECCcccccccccCcceehHHHHHHHHHH-CCCEEEEEecCC-CHHHHHHHH---hcCCEEEEeCCCcccChh-hh
Confidence 46777754321 232 46788888 699999999876 366765544 569999999999987532 22
Q ss_pred ----hHHHHHHHHc---C-CCCEEEEcHHHHHHHHHhCCeeeecCCCceeceeEEEe----cCCcccccCCCCCC----c
Q 046651 74 ----GICLRVLLEC---W-DVPILGVCLGHQALGFVHGADIVHAPEPVHGRLSEIVH----NGDRLFHDIPSGQN----S 137 (392)
Q Consensus 74 ----gi~~~ll~~~---~-~iPILGVCLGhQ~La~a~Gg~V~~apep~hG~~s~i~h----~g~~LF~~ips~~~----s 137 (392)
..+.+.+++. + ++||||||+|||+|+.++||.+.....+.+|....+.. .++.||+++|+... .
T Consensus 105 ~~~~~~l~~~~~~~~~~g~~~PiLGIC~G~Qll~~a~GG~~~~~~~~~~g~~~p~~~~~~~~~s~L~~~~~~~~~~~l~~ 184 (315)
T 1l9x_A 105 AKVAKIFYNLSIQSFDDGDYFPVWGTCLGFEELSLLISGECLLTATDTVDVAMPLNFTGGQLHSRMFQNFPTELLLSLAV 184 (315)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCCEEEETHHHHHHHHHHHSSCCCEEEEEEEEEECCEECSTTTTCSTTTTSCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcCCCceEEEEChHHHHHHHHhCCccccccccccCCCCCeeeccCCCCChHHHhcChhhhhhccc
Confidence 1223333332 2 59999999999999999999976655556675434433 47889999875300 0
Q ss_pred ceEEEeeecceeecC------CCCCCcEEEEEecCCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCccccc
Q 046651 138 GFKVVRYHSLIIDAD------SLPKELIPIAWSNSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSI 211 (392)
Q Consensus 138 ~f~VvryHSl~V~~~------sLP~~l~~iAwt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 211 (392)
...++++|++.|+++ .||++++++|++.+ +.
T Consensus 185 ~~~~~~~H~~~V~~~~~~~~~~l~~g~~v~A~s~d--------------g~----------------------------- 221 (315)
T 1l9x_A 185 EPLTANFHKWSLSVKNFTMNEKLKKFFNVLTTNTD--------------GK----------------------------- 221 (315)
T ss_dssp SCCEEEEEEEECBHHHHHTCHHHHHHEEEEEEEES--------------SS-----------------------------
T ss_pred cceEEEhhhhhcCccccccccccCCCCEEEEEcCC--------------CC-----------------------------
Confidence 012457999999842 28889999999987 40
Q ss_pred ccccCCcceEEEEEecCCCEEEEeccCCCCCCc---------------hhHHHHHHHHHHHHHh
Q 046651 212 YSNRMRREVLMGIMHSTRPHYGVQFHPESIATC---------------YGSKILRNFREITEDY 260 (392)
Q Consensus 212 ~~~~~~~~~vmgi~h~~~P~~GVQFHPEsiat~---------------~G~~I~~NF~~l~~~~ 260 (392)
...+|+++|.+.|+||||||||+..++ .|++||++|++++++.
T Consensus 222 ------ve~i~~i~~~~~~i~GVQfHPE~~~~e~~~~~~~p~s~~a~~~~~~lf~~Fv~~a~~~ 279 (315)
T 1l9x_A 222 ------IEFISTMEGYKYPVYGVQWHPEKAPYEWKNLDGISHAPNAVKTAFYLAEFFVNEARKN 279 (315)
T ss_dssp ------CEEEEEEEESSSCEEEESSCTTHHHHCCSSCTTCCCCHHHHHHHHHHHHHHHHHHTTS
T ss_pred ------EEEEEEeccCCCCEEEEEeCCCCCcccccccccCCccHHHHHHHHHHHHHHHHHHHhc
Confidence 115778899888999999999986522 4789999999998643
|
| >1vco_A CTP synthetase; tetramer, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLN; 2.15A {Thermus thermophilus} SCOP: c.23.16.1 c.37.1.10 PDB: 1vcn_A 1vcm_A | Back alignment and structure |
|---|
Probab=99.93 E-value=3e-27 Score=247.81 Aligned_cols=199 Identities=19% Similarity=0.200 Sum_probs=133.1
Q ss_pred EEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCH--HHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHH--
Q 046651 7 TLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTW--RDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLE-- 82 (392)
Q Consensus 7 ~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~--eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~-- 82 (392)
++++|||+|++++|.++... +|+++++++++...+ +++...| ..+|+|||+||||+|... + ..+++++
T Consensus 310 v~l~D~y~Sv~~aL~~~g~~-~g~~v~I~~~d~~~~~~~~~~~~L---~~~DGIILpGGfGd~~~~---g-~i~~ir~a~ 381 (550)
T 1vco_A 310 VKMPDAYLSLLEALRHAGIK-NRARVEVKWVDAESLEAADLEEAF---RDVSGILVPGGFGVRGIE---G-KVRAAQYAR 381 (550)
T ss_dssp C---CTTHHHHHHHHHHHHH-TTEEEEEEEEEGGGC--CCHHHHT---TTCSCEEECCCCSSTTHH---H-HHHHHHHHH
T ss_pred EEEEecHHHHHHHHHHHHHH-cCCeEEEEEeCccccccchHHHHH---hcCCEEEECCCCCCcchh---h-hHHHHHHHH
Confidence 67899999999999999887 799999887766322 1232223 579999999999998532 2 2234433
Q ss_pred cCCCCEEEEcHHHHHHHHHhCCeeeecCC---------CceeceeEE------EecC--------------CcccccCCC
Q 046651 83 CWDVPILGVCLGHQALGFVHGADIVHAPE---------PVHGRLSEI------VHNG--------------DRLFHDIPS 133 (392)
Q Consensus 83 ~~~iPILGVCLGhQ~La~a~Gg~V~~ape---------p~hG~~s~i------~h~g--------------~~LF~~ips 133 (392)
..++|+||||||||+|+.++|+.+..++. ..|+....+ .|.+ ..++..+..
T Consensus 382 e~~iPiLGICLGmQlL~~a~Gg~v~~l~~~~s~E~~~~~~hpvi~~~~~q~~i~~~ggtmrlG~~~v~i~~~s~l~~iy~ 461 (550)
T 1vco_A 382 ERKIPYLGICLGLQIAVIEFARNVAGLKGANSTEFDPHTPHPVIDLMPEQLEVEGLGGTMRLGDWPMRIKPGTLLHRLYG 461 (550)
T ss_dssp HTTCCEEEETHHHHHHHHHHHHHTSCCTTCEETTTCTTCSCEEEEESCGGGCC---CCCCEEEEEEEEECTTSHHHHHHC
T ss_pred HCCCcEEEECcCHHHHHHHhCcccccCCccccccccCCCCCCeEEeccccccccccCCcccccceEEEEccCchhhHhcC
Confidence 24899999999999999999998876542 234433211 1111 122222211
Q ss_pred CCCcceEEEeeecceeecC---CCC-CCcEEEEEecCCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCccc
Q 046651 134 GQNSGFKVVRYHSLIIDAD---SLP-KELIPIAWSNSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRH 209 (392)
Q Consensus 134 ~~~s~f~VvryHSl~V~~~---sLP-~~l~~iAwt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 209 (392)
.. .+.....|.+.|++. .++ ++++++||+.+ +.+
T Consensus 462 ~~--~v~e~h~H~Y~Vns~~~~~l~~~gl~v~a~s~d--------------G~g-------------------------- 499 (550)
T 1vco_A 462 KE--EVLERHRHRYEVNPLYVDGLERAGLVVSATTPG--------------MRG-------------------------- 499 (550)
T ss_dssp CS--EEEEEEEESEEECHHHHHHHHHHTEEEEEECCC--------------BTT--------------------------
T ss_pred Cc--eeeeeccceEEEchHHhhccccCCeEEEEEeCC--------------CCc--------------------------
Confidence 10 011235677777542 255 68999999876 200
Q ss_pred ccccccCCcceEEEEEecCCCEE-EEeccCCCCCCch-hHHHHHHHHHHHHHhh
Q 046651 210 SIYSNRMRREVLMGIMHSTRPHY-GVQFHPESIATCY-GSKILRNFREITEDYW 261 (392)
Q Consensus 210 ~~~~~~~~~~~vmgi~h~~~P~~-GVQFHPEsiat~~-G~~I~~NF~~l~~~~~ 261 (392)
..+..+|||+|.++|+| |||||||+.+++. |++||+||++++.++.
T Consensus 500 ------~~~~~VeaIe~~~~p~fvGVQFHPE~~~~p~~g~~LF~~Fv~aa~~~~ 547 (550)
T 1vco_A 500 ------RGAGLVEAIELKDHPFFLGLQSHPEFKSRPMRPSPPFVGFVEAALAYQ 547 (550)
T ss_dssp ------BSTTCEEEEEETTSSSEEEESSCGGGGCBTTBCCHHHHHHHHHHHHHT
T ss_pred ------cCCCcEEEEEeCCCCEEEEEEeCCccCCCCCChHHHHHHHHHHHHhhc
Confidence 00128999999999998 9999999988876 9999999999988753
|
| >1ka9_H Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.23.16.1 | Back alignment and structure |
|---|
Probab=99.93 E-value=5.5e-26 Score=207.74 Aligned_cols=174 Identities=20% Similarity=0.227 Sum_probs=126.2
Q ss_pred cEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCC----CCchhHHHHHH
Q 046651 5 VRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPAC----PEDIGICLRVL 80 (392)
Q Consensus 5 ~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~----~~d~gi~~~ll 80 (392)
|||+|||...++...+.+.|++ .|.+++++++++ ++ ..+|+||| ||||++.. ..+ ....++|
T Consensus 3 ~~I~iid~~~~~~~~~~~~l~~-~G~~~~~~~~~~----~l-------~~~d~lil-~G~g~~~~~~~~l~~-~~~~~~i 68 (200)
T 1ka9_H 3 MKALLIDYGSGNLRSAAKALEA-AGFSVAVAQDPK----AH-------EEADLLVL-PGQGHFGQVMRAFQE-SGFVERV 68 (200)
T ss_dssp CEEEEECSSCSCHHHHHHHHHH-TTCEEEEESSTT----SC-------SSCSEEEE-CCCSCHHHHHHTTSS-SCTHHHH
T ss_pred cEEEEEeCCCccHHHHHHHHHH-CCCeEEEecChH----Hc-------ccCCEEEE-CCCCcHHHHHHHHHh-cCHHHHH
Confidence 6899999876777888899988 799999987543 22 46999999 88887642 111 1134445
Q ss_pred HH--cCCCCEEEEcHHHHHHHHH---hC---------CeeeecC---CCceeceeEEEecCCcccccCCCCCCcceEEEe
Q 046651 81 LE--CWDVPILGVCLGHQALGFV---HG---------ADIVHAP---EPVHGRLSEIVHNGDRLFHDIPSGQNSGFKVVR 143 (392)
Q Consensus 81 ~~--~~~iPILGVCLGhQ~La~a---~G---------g~V~~ap---ep~hG~~s~i~h~g~~LF~~ips~~~s~f~Vvr 143 (392)
++ ..++||||||+|||+|+.+ +| ++|.+.+ .+..|+... .... . |.+++. +.+++
T Consensus 69 ~~~~~~~~PilGIC~G~Qll~~~~~~~Gg~~~l~~~~g~v~~~~~~~~~~~G~~~v-~~~~-~-l~~~~~-----~~~~~ 140 (200)
T 1ka9_H 69 RRHLERGLPFLGICVGMQVLYEGSEEAPGVRGLGLVPGEVRRFRAGRVPQMGWNAL-EFGG-A-FAPLTG-----RHFYF 140 (200)
T ss_dssp HHHHHTTCCEEECTHHHHTTSSEETTSTTCCCCCSSSSEEEECCSSSSSEEEEEEC-EECG-G-GGGGTT-----CEEEE
T ss_pred HHHHHcCCeEEEEcHHHHHHHHhccccCCcCCccccccEEEECCCCCCCceeEEEE-Eech-h-hhcCCC-----CCEEE
Confidence 43 2489999999999999999 68 8888875 456776543 3223 4 777764 57899
Q ss_pred eecceeecCCCCCCcEEEEEecCCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCcccccccccCCcceEEE
Q 046651 144 YHSLIIDADSLPKELIPIAWSNSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMG 223 (392)
Q Consensus 144 yHSl~V~~~sLP~~l~~iAwt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vmg 223 (392)
+||+.+ + +++. .+ |++++. + ..+++
T Consensus 141 ~Hs~~~-~--~~~~-~v-a~s~~~-------------g-------------------------------------~~~~~ 165 (200)
T 1ka9_H 141 ANSYYG-P--LTPY-SL-GKGEYE-------------G-------------------------------------TPFTA 165 (200)
T ss_dssp EESEEC-C--CCTT-CC-EEEEET-------------T-------------------------------------EEEEE
T ss_pred eccccc-C--CCCC-cE-EEEEeC-------------C-------------------------------------eEEEE
Confidence 999999 5 4443 44 777540 1 15788
Q ss_pred EEecCCCEEEEeccCCCCCCchhHHHH---HHHHHHH
Q 046651 224 IMHSTRPHYGVQFHPESIATCYGSKIL---RNFREIT 257 (392)
Q Consensus 224 i~h~~~P~~GVQFHPEsiat~~G~~I~---~NF~~l~ 257 (392)
+.+.+ ++||||||||+.. +.|++|| +||++++
T Consensus 166 ~~~~~-~i~gvQfHPE~~~-~~g~~l~~~~~~F~~~~ 200 (200)
T 1ka9_H 166 LLAKE-NLLAPQFHPEKSG-KAGLAFLALARRYFEVL 200 (200)
T ss_dssp EEECS-SEEEESSCTTSSH-HHHHHHHHHHHHHC---
T ss_pred EEeeC-CEEEEecCCCcCc-cchhHHHHHHHHHHhhC
Confidence 88766 9999999999965 8899999 9998764
|
| >2nv0_A Glutamine amidotransferase subunit PDXT; 3-layer(ABA) sandwich, rossmann fold, glutaminase; 1.73A {Bacillus subtilis} SCOP: c.23.16.1 PDB: 1r9g_A 2nv2_B* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.7e-25 Score=203.39 Aligned_cols=181 Identities=15% Similarity=0.197 Sum_probs=124.9
Q ss_pred cEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCC-CchhHHHHHHHH-
Q 046651 5 VRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACP-EDIGICLRVLLE- 82 (392)
Q Consensus 5 ~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~-~d~gi~~~ll~~- 82 (392)
|||+|||++++|+.++ +.|++ .|+++++++.. +++ ..+|+|||+||++++... .+..-..+++++
T Consensus 2 m~I~il~~~~~~~~~~-~~l~~-~g~~~~~~~~~----~~l-------~~~d~iil~GG~~~~~~~~~~~~~~~~~i~~~ 68 (196)
T 2nv0_A 2 LTIGVLGLQGAVREHI-HAIEA-CGAAGLVVKRP----EQL-------NEVDGLILPGGESTTMRRLIDTYQFMEPLREF 68 (196)
T ss_dssp CEEEEECSSSCCHHHH-HHHHH-TTCEEEEECSG----GGG-------GGCSEEEECCSCHHHHHHHHHHTTCHHHHHHH
T ss_pred cEEEEEEccCCcHHHH-HHHHH-CCCEEEEeCCh----HHH-------hhCCEEEECCCChhhHHHHhhhHHHHHHHHHH
Confidence 8999999999999887 88887 69999888642 233 359999999998665321 000111344444
Q ss_pred -cCCCCEEEEcHHHHHHHHHhCCeeeecCCCceeceeEEE-------ecCCcccccCCCCCCcceEEEeeecceeecCCC
Q 046651 83 -CWDVPILGVCLGHQALGFVHGADIVHAPEPVHGRLSEIV-------HNGDRLFHDIPSGQNSGFKVVRYHSLIIDADSL 154 (392)
Q Consensus 83 -~~~iPILGVCLGhQ~La~a~Gg~V~~apep~hG~~s~i~-------h~g~~LF~~ips~~~s~f~VvryHSl~V~~~sL 154 (392)
..++||||||+|||+|+.++|+.+...-....+...... +....++.+++.. |.+.++|++.|.. +
T Consensus 69 ~~~~~pilgIC~G~q~l~~~~gg~~~~~lg~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~----~~~~~~h~~~v~~--~ 142 (196)
T 2nv0_A 69 AAQGKPMFGTCAGLIILAKEIAGSDNPHLGLLNVVVERNSFGRQVDSFEADLTIKGLDEP----FTGVFIRAPHILE--A 142 (196)
T ss_dssp HHTTCCEEEETHHHHHHSBCCC----CCCCCSCEEEECCCSCTTTSEEEEEECCTTCSSC----EEEEEESCCEEEE--E
T ss_pred HHCCCcEEEECHHHHHHHHHhcCCCCCcccCCceeEeccCCCcccccccCCcccccCCCc----eEEEEEecceecc--c
Confidence 248999999999999999999975321111111110000 0112355666544 8999999999986 8
Q ss_pred CCCcEEEEEecCCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCcccccccccCCcceEEEEEecCCCEEEE
Q 046651 155 PKELIPIAWSNSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGIMHSTRPHYGV 234 (392)
Q Consensus 155 P~~l~~iAwt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vmgi~h~~~P~~GV 234 (392)
|++++++|++ + + .++|+++ .++||+
T Consensus 143 ~~~~~v~a~~-d--------------~--------------------------------------~~~a~~~--~~~~gv 167 (196)
T 2nv0_A 143 GENVEVLSEH-N--------------G--------------------------------------RIVAAKQ--GQFLGC 167 (196)
T ss_dssp CTTCEEEEEE-T--------------T--------------------------------------EEEEEEE--TTEEEE
T ss_pred CCCcEEEEEE-C--------------C--------------------------------------EEEEEEE--CCEEEE
Confidence 8999999998 4 3 6799986 489999
Q ss_pred eccCCCCCCchhHHHHHHHHHHHHHhhh
Q 046651 235 QFHPESIATCYGSKILRNFREITEDYWK 262 (392)
Q Consensus 235 QFHPEsiat~~G~~I~~NF~~l~~~~~~ 262 (392)
|||||.... .+|++||++.++...+
T Consensus 168 QfHPE~~~~---~~l~~~fl~~~~~~~~ 192 (196)
T 2nv0_A 168 SFHPELTED---HRVTQLFVEMVEEYKQ 192 (196)
T ss_dssp SSCTTSSSC---CHHHHHHHHHHHHHHH
T ss_pred EECCccCCc---hHHHHHHHHHHHhhhh
Confidence 999998443 4899999998876443
|
| >2v4u_A CTP synthase 2; pyrimidine biosynthesis, glutamine amidotransferase, glutaminase domain, 5-OXO-L-norleucine, DON, ligase, phosphoprotein; HET: CYD; 2.3A {Homo sapiens} PDB: 2vkt_A | Back alignment and structure |
|---|
Probab=99.93 E-value=3.8e-26 Score=221.92 Aligned_cols=193 Identities=17% Similarity=0.142 Sum_probs=131.2
Q ss_pred ccEEEEE-EC-CCCc-hHHHHHHHHHhCCC----CeEEEeCCCCCH---------HH---HHhhhcccCCcCEEEECCCC
Q 046651 4 FVRTLLI-DN-YDSY-TYNIYQELSTINGV----PPVVVRNDEWTW---------RD---ICRYLYEENAFDNIVISPGP 64 (392)
Q Consensus 4 ~~r~LlI-Dn-yDSy-T~nl~q~L~~v~G~----~pvVV~nd~~~~---------ee---l~~~l~e~~~fDgIVISpGP 64 (392)
.|||+|| |. ..++ ..++++.|.+. |+ .++++..+..+. ++ +...+ ..+|+|||+|||
T Consensus 25 ~~~Iavv~d~~~~~~s~~si~~~L~~~-G~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~~~dgiil~GG~ 100 (289)
T 2v4u_A 25 ICSIALVGKYTKLRDCYASVFKALEHS-ALAINHKLNLMYIDSIDLEKITETEDPVKFHEAWQKL---CKADGILVPGGF 100 (289)
T ss_dssp EEEEEEEESCSSCCGGGHHHHHHHHHH-HHHTTEEEEEEEEEGGGGSHHHHHHCHHHHHHHHHHH---HHCSEEEECSCC
T ss_pred ceEEEEEecCcCCCccHHHHHHHHHHh-hhhhCCceEEEEechhhcccccccCChhhhhhHHHHH---hhCCEEEecCCC
Confidence 4799999 65 4444 33778888763 44 344444432111 11 11112 459999999999
Q ss_pred CCCCCCCchhHHHHHHHH--cCCCCEEEEcHHHHHHHHHhCCeee---ecCC---------C------ceec--------
Q 046651 65 GSPACPEDIGICLRVLLE--CWDVPILGVCLGHQALGFVHGADIV---HAPE---------P------VHGR-------- 116 (392)
Q Consensus 65 Gsp~~~~d~gi~~~ll~~--~~~iPILGVCLGhQ~La~a~Gg~V~---~ape---------p------~hG~-------- 116 (392)
|++.. .-+.+++++ ..++||||||+|||+|+.++||+|. .++. + .|+.
T Consensus 101 ~~~~~----~~~~~~i~~~~~~~~PilGIC~G~Q~l~~a~Gg~v~~~~~~~~~e~~~~~~~~~i~~~~~h~~~~~~~~~~ 176 (289)
T 2v4u_A 101 GIRGT----LGKLQAISWARTKKIPFLGVXLGMQLAVIEFARNCLNLKDADSTEFRPNAPVPLVIDMPEHNPGNLGGTMR 176 (289)
T ss_dssp SSTTH----HHHHHHHHHHHHTTCCEEEETHHHHHHHHHHHHHHSCCTTEEESTTCTTCSEEEEEECCBCCTTCSSCBCE
T ss_pred CchhH----HHHHHHHHHHHHcCCcEEEECccHHHHHHHHhccccccccCcccccCccccccceecchhhcccccCCccc
Confidence 88432 224455554 2489999999999999999999985 2210 0 1221
Q ss_pred --eeEEEe--cCCcccccCCCCCCcceEEEee--ecceeecC---CCC-CCcEEEEEecCCCCccccccCCCCCCCcccc
Q 046651 117 --LSEIVH--NGDRLFHDIPSGQNSGFKVVRY--HSLIIDAD---SLP-KELIPIAWSNSADGFSYLGTLQSGEIPDAYQ 186 (392)
Q Consensus 117 --~s~i~h--~g~~LF~~ips~~~s~f~Vvry--HSl~V~~~---sLP-~~l~~iAwt~~~~~~~~~~~~~~~~~~~~~~ 186 (392)
...+.. .++.|++.++.. +.|..+ |++.|+++ .|| ++++++|++.+ +
T Consensus 177 ~g~~~v~~~~~~s~l~~~~~~~----~~v~~~H~H~y~vn~~~v~~l~~~g~~v~A~s~d--------------g----- 233 (289)
T 2v4u_A 177 LGIRRTVFKTENSILRKLYGDV----PFIEERHRHRFEVNPNLIKQFEQNDLSFVGQDVD--------------G----- 233 (289)
T ss_dssp EEEEEEEESCSCCHHHHHTTSC----SEEEEEEEECEEECGGGSGGGTTSSEEEEEEETT--------------S-----
T ss_pred cceEEEEEecCCCHHHHhcCCC----ceEEEecccccccCHHHHHhcccCCeEEEEEcCC--------------C-----
Confidence 133444 467787777664 566544 46666553 378 89999999987 6
Q ss_pred cchhhhhhcccccccccCCCcccccccccCCcce-EEEEEecCCCEE-EEeccCCCCCCch-hHHHHHHHHHHHHHh
Q 046651 187 SQSRQKILLSDISTQIKNGSYRHSIYSNRMRREV-LMGIMHSTRPHY-GVQFHPESIATCY-GSKILRNFREITEDY 260 (392)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-vmgi~h~~~P~~-GVQFHPEsiat~~-G~~I~~NF~~l~~~~ 260 (392)
. +|||++.++|+| |||||||+..++. +++||++|++.+...
T Consensus 234 ---------------------------------~~ieaie~~~~p~~lGvQfHPE~~~~~~~~~~lf~~Fv~~~~~~ 277 (289)
T 2v4u_A 234 ---------------------------------DRMEIIELANHPYFVGVQFHPEFSSRPMKPSPPYLGLLLAATGN 277 (289)
T ss_dssp ---------------------------------CSEEEEEESSSSCEEEESSBGGGGCBTTBCCHHHHHHHHHHHTC
T ss_pred ---------------------------------CeEEEEEcCCCCeEEEEECCCCCCCCCCchHHHHHHHHHHHHhh
Confidence 5 999999999976 9999999987665 699999999988643
|
| >1q7r_A Predicted amidotransferase; structural genomics, YAAE, PDX2, predicted glutamine amidotransferase, PSI; HET: MSE; 1.90A {Geobacillus stearothermophilus} SCOP: c.23.16.1 | Back alignment and structure |
|---|
Probab=99.92 E-value=2.2e-25 Score=207.14 Aligned_cols=181 Identities=14% Similarity=0.171 Sum_probs=127.0
Q ss_pred CccEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCC-CchhHHHHHHH
Q 046651 3 EFVRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACP-EDIGICLRVLL 81 (392)
Q Consensus 3 ~~~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~-~d~gi~~~ll~ 81 (392)
..|||+|||++++|+.+ ++.|++ .|+++++++.. +++ ..+|+|||+||++++... .......++|+
T Consensus 22 ~~~~I~il~~~~~~~~~-~~~l~~-~G~~~~~~~~~----~~l-------~~~Dglil~GG~~~~~~~~~~~~~~~~~i~ 88 (219)
T 1q7r_A 22 SNMKIGVLGLQGAVREH-VRAIEA-CGAEAVIVKKS----EQL-------EGLDGLVLPGGESTTMRRLIDRYGLMEPLK 88 (219)
T ss_dssp CCCEEEEESCGGGCHHH-HHHHHH-TTCEEEEECSG----GGG-------TTCSEEEECCCCHHHHHHHHHHTTCHHHHH
T ss_pred CCCEEEEEeCCCCcHHH-HHHHHH-CCCEEEEECCH----HHH-------hhCCEEEECCCChHHHHHHhhhhHHHHHHH
Confidence 45899999998889865 478877 79999888752 232 469999999998754320 00011134444
Q ss_pred H--cCCCCEEEEcHHHHHHHHHhCCeeeecCCCce--------eceeEEEecCCcccccCCCCCCcceEEEeeecceeec
Q 046651 82 E--CWDVPILGVCLGHQALGFVHGADIVHAPEPVH--------GRLSEIVHNGDRLFHDIPSGQNSGFKVVRYHSLIIDA 151 (392)
Q Consensus 82 ~--~~~iPILGVCLGhQ~La~a~Gg~V~~apep~h--------G~~s~i~h~g~~LF~~ips~~~s~f~VvryHSl~V~~ 151 (392)
+ ..++||||||+|||+|+.++|+.+...-.... |+.. ..+.....|.+++.. |.+.++|++.|+.
T Consensus 89 ~~~~~~~PilGIC~G~QlL~~~~gg~~~~~lg~~~~~~~~~~~g~~~-~~~~~~~~~~g~g~~----~~~~~~h~~~v~~ 163 (219)
T 1q7r_A 89 QFAAAGKPMFGTCAGLILLAKRIVGYDEPHLGLMDITVERNSFGRQR-ESFEAELSIKGVGDG----FVGVFIRAPHIVE 163 (219)
T ss_dssp HHHHTTCCEEEETTHHHHHEEEEESSCCCCCCCEEEEEECHHHHCCC-CCEEEEEEETTTEEE----EEEEESSCCEEEE
T ss_pred HHHHcCCeEEEECHHHHHHHHHhCCCCcCCcCccceEEEecCCCccc-cceecCcccCCCCCc----eEEEEEecceeec
Confidence 4 24899999999999999999997632111111 1110 001111234555433 8889999999987
Q ss_pred CCCCCCcEEEEEecCCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCcccccccccCCcceEEEEEecCCCE
Q 046651 152 DSLPKELIPIAWSNSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGIMHSTRPH 231 (392)
Q Consensus 152 ~sLP~~l~~iAwt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vmgi~h~~~P~ 231 (392)
+|++++++|++ + + .++|+++ .++
T Consensus 164 --l~~~~~v~a~s-d--------------g--------------------------------------~~ea~~~--~~i 186 (219)
T 1q7r_A 164 --AGDGVDVLATY-N--------------D--------------------------------------RIVAARQ--GQF 186 (219)
T ss_dssp --ECTTCEEEEEE-T--------------T--------------------------------------EEEEEEE--TTE
T ss_pred --cCCCcEEEEEc-C--------------C--------------------------------------EEEEEEE--CCE
Confidence 89999999998 5 4 7899987 489
Q ss_pred EEEeccCCCCCCchhHHHHHHHHHHHHHhh
Q 046651 232 YGVQFHPESIATCYGSKILRNFREITEDYW 261 (392)
Q Consensus 232 ~GVQFHPEsiat~~G~~I~~NF~~l~~~~~ 261 (392)
||+|||||.... .+||+||++.+..+.
T Consensus 187 ~GvQfHPE~~~~---~~l~~~fl~~~~~~~ 213 (219)
T 1q7r_A 187 LGCSFHPELTDD---HRLMQYFLNMVKEAK 213 (219)
T ss_dssp EEESSCGGGSSC---CHHHHHHHHHHHHHH
T ss_pred EEEEECcccCCC---HHHHHHHHHHHHHhh
Confidence 999999999532 589999999987653
|
| >1s1m_A CTP synthase; CTP synthetase, UTP:ammonia ligase (ADP-forming), cytidine 5 triphosphate synthase, ammonia lyase; 2.30A {Escherichia coli} SCOP: c.23.16.1 c.37.1.10 PDB: 2ad5_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=4.5e-26 Score=238.65 Aligned_cols=194 Identities=19% Similarity=0.209 Sum_probs=133.1
Q ss_pred EEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHH-HHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHH--c
Q 046651 7 TLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWR-DICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLE--C 83 (392)
Q Consensus 7 ~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~e-el~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~--~ 83 (392)
++++|+|+|++++|.+.... +|+++++++++..+++ ++...+ ..+|+||||||||+|... + ..+++++ .
T Consensus 299 v~l~D~y~Si~~aL~~~G~~-~~~~V~i~~~d~e~i~~~~~~~l---~~~DGIilsGGpg~~~~~---g-~~~~i~~a~~ 370 (545)
T 1s1m_A 299 IELPDAYKSVIEALKHGGLK-NRVSVNIKLIDSQDVETRGVEIL---KGLDAILVPGGFGYRGVE---G-MITTARFARE 370 (545)
T ss_dssp CSSGGGGHHHHHHHHHHHHH-HTEEEEEEEEEHHHHHHHCTTTT---TTCSEEEECCCCSSTTHH---H-HHHHHHHHHH
T ss_pred EEEEEHHHHHHHHHHHhCcc-cCCeEEEccCCHHHhhhhhhhhh---hcCCEEEECCCCCCccch---h-hHHHHHHHHH
Confidence 56789999999999888776 4778888877642221 111222 579999999999998532 2 2233433 2
Q ss_pred CCCCEEEEcHHHHHHHHHhCCeeeecCCC---------ceeceeE------------------------------EEecC
Q 046651 84 WDVPILGVCLGHQALGFVHGADIVHAPEP---------VHGRLSE------------------------------IVHNG 124 (392)
Q Consensus 84 ~~iPILGVCLGhQ~La~a~Gg~V~~apep---------~hG~~s~------------------------------i~h~g 124 (392)
.++|+||||+|||+|+.++|+++..++.. .|+.... +....
T Consensus 371 ~~~PiLGIClG~Qll~va~Gg~v~~l~~a~s~E~~~~~~hpvi~l~~~w~~~~g~~~~q~~~~~~ggtmrlG~~~v~l~~ 450 (545)
T 1s1m_A 371 NNIPYLGICLGMQVALIDYARHVANMENANSTEFVPDCKYPVVALITEWRDENGNVEVRSEKSDLGGTMRLGAQQCQLVD 450 (545)
T ss_dssp TTCCEEEETHHHHHHHHHHHHHHHCCTTCEETTTCSSCSCEEEECTTTCCCTTSCCC----------CCEEEEEEEEECT
T ss_pred CCCcEEEECChHHHHHHHhCCceecCCCCcccccCCCCCCceEEeecccccccccccccccccccCccccccceeeEecc
Confidence 48999999999999999999999865422 1221110 01111
Q ss_pred CcccccCCCCCCcceEE--EeeecceeecCC---C-CCCcEEEEEecCCCCccccccCCCCCCCcccccchhhhhhcccc
Q 046651 125 DRLFHDIPSGQNSGFKV--VRYHSLIIDADS---L-PKELIPIAWSNSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDI 198 (392)
Q Consensus 125 ~~LF~~ips~~~s~f~V--vryHSl~V~~~s---L-P~~l~~iAwt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (392)
..++..+... ..+ ...|.+.|++.. | +++++++|++.+ +
T Consensus 451 ~s~l~~iyg~----~~v~e~h~Hry~VNs~~~~~l~~~gl~v~a~s~d--------------g----------------- 495 (545)
T 1s1m_A 451 DSLVRQLYNA----PTIVERHRHRYEVNNMLLKQIEDAGLRVAGRSGD--------------D----------------- 495 (545)
T ss_dssp TCHHHHHTTS----SEEEEEEEECCEECHHHHHHHHHTTCEEEEECSS--------------S-----------------
T ss_pred CCHHHHhcCC----ceEEEecCcceEEChHHhhhcccCCeEEEEECCC--------------C-----------------
Confidence 1222222222 233 356777776532 4 379999999877 3
Q ss_pred cccccCCCcccccccccCCcceEEEEEecCCCEE-EEeccCCCCCCch-hHHHHHHHHHHHHHhhhh
Q 046651 199 STQIKNGSYRHSIYSNRMRREVLMGIMHSTRPHY-GVQFHPESIATCY-GSKILRNFREITEDYWKR 263 (392)
Q Consensus 199 ~~~~~~g~~~~~~~~~~~~~~~vmgi~h~~~P~~-GVQFHPEsiat~~-G~~I~~NF~~l~~~~~~~ 263 (392)
..+||++|.++|+| |||||||+.+++. |+.||+||++++.++.++
T Consensus 496 --------------------~~VEaie~~~~p~flGVQFHPE~~~~p~~g~~LF~~Fv~aa~~~~~~ 542 (545)
T 1s1m_A 496 --------------------QLVEIIEVPNHPWFVACQFHPEFTSTPRDGHPLFAGFVKAASEFQKR 542 (545)
T ss_dssp --------------------CCEEEEECTTSSSEEEESSCGGGTCCTTTCCHHHHHHHHHHHHHHHH
T ss_pred --------------------CceEEEEeCCCCEEEEEeCCCCCCCCCCChHHHHHHHHHHHHHHHhh
Confidence 17999999999988 9999999998887 899999999999876543
|
| >2ywd_A Glutamine amidotransferase subunit PDXT; pyridoxine biosynthesis, structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.90 E-value=2.6e-24 Score=193.97 Aligned_cols=173 Identities=14% Similarity=0.126 Sum_probs=117.6
Q ss_pred ccEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCch---hHHHHHH
Q 046651 4 FVRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDI---GICLRVL 80 (392)
Q Consensus 4 ~~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~---gi~~~ll 80 (392)
+|+|.|+...+.+ .++.+.|.+ .|++++++++++ ++ ..+|+|||+||++. .+.+. ..+.+++
T Consensus 2 ~p~Igi~~~~~~~-~~~~~~l~~-~G~~~~~~~~~~----~l-------~~~dglil~GG~~~--~~~~~~~~~~~~~~i 66 (191)
T 2ywd_A 2 RGVVGVLALQGDF-REHKEALKR-LGIEAKEVRKKE----HL-------EGLKALIVPGGEST--TIGKLAREYGIEDEV 66 (191)
T ss_dssp -CCEEEECSSSCH-HHHHHHHHT-TTCCCEEECSGG----GG-------TTCSEEEECSSCHH--HHHHHHHHTTHHHHH
T ss_pred CcEEEEEecCCch-HHHHHHHHH-CCCEEEEeCChh----hh-------ccCCEEEECCCChh--hhHHhhhhhhHHHHH
Confidence 3678898775444 467888887 799999987543 22 45999999998532 11111 1124455
Q ss_pred HH--cCC-CCEEEEcHHHHHHHHHhCC-eeeecCCCc--------eeceeEEEecCCcccccCCCCCCcceEEEeeecce
Q 046651 81 LE--CWD-VPILGVCLGHQALGFVHGA-DIVHAPEPV--------HGRLSEIVHNGDRLFHDIPSGQNSGFKVVRYHSLI 148 (392)
Q Consensus 81 ~~--~~~-iPILGVCLGhQ~La~a~Gg-~V~~apep~--------hG~~s~i~h~g~~LF~~ips~~~s~f~VvryHSl~ 148 (392)
++ ..+ +||||||+|||+|+.++|+ .+...-... +|+.. ..+....++.++ .. +.+.++||+.
T Consensus 67 ~~~~~~~~~PilGiC~G~Q~l~~~~gg~~~~~~lg~~~~~~~~~~~g~~~-~~~~~~~~~~~~-~~----~~~~~~Hs~~ 140 (191)
T 2ywd_A 67 RKRVEEGSLALFGTCAGAIWLAKEIVGYPEQPRLGVLEAWVERNAFGRQV-ESFEEDLEVEGL-GS----FHGVFIRAPV 140 (191)
T ss_dssp HHHHHTTCCEEEEETHHHHHHEEEETTCTTCCCCCCEEEEEETTCSCCSS-SEEEEEEEETTT-EE----EEEEEESCCE
T ss_pred HHHHHCCCCeEEEECHHHHHHHHHhCCCCCCccccccceEEEcCCcCCcc-ccccccccccCC-Cc----eeEEEEcccc
Confidence 54 247 9999999999999999998 432111111 22110 001112234444 22 7889999999
Q ss_pred eecCCCCCCcEEEEEecCCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCcccccccccCCcceEEEEEecC
Q 046651 149 IDADSLPKELIPIAWSNSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGIMHST 228 (392)
Q Consensus 149 V~~~sLP~~l~~iAwt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vmgi~h~~ 228 (392)
++. +|++++++|++ + + .+||+++.
T Consensus 141 v~~--l~~~~~~~a~~-~--------------~--------------------------------------~~~a~~~~- 164 (191)
T 2ywd_A 141 FRR--LGEGVEVLARL-G--------------D--------------------------------------LPVLVRQG- 164 (191)
T ss_dssp EEE--ECTTCEEEEEE-T--------------T--------------------------------------EEEEEEET-
T ss_pred eec--cCCCcEEEEEE-C--------------C--------------------------------------EEEEEEEC-
Confidence 976 88999999998 5 4 89999975
Q ss_pred CCEEEEeccCCCCCCchhHHHHHHHHHHH
Q 046651 229 RPHYGVQFHPESIATCYGSKILRNFREIT 257 (392)
Q Consensus 229 ~P~~GVQFHPEsiat~~G~~I~~NF~~l~ 257 (392)
++||+|||||... .+ +||+||++++
T Consensus 165 -~~~gvQfHPE~~~--~~-~l~~~f~~~~ 189 (191)
T 2ywd_A 165 -KVLASSFHPELTE--DP-RLHRYFLELA 189 (191)
T ss_dssp -TEEEESSCGGGSS--CC-HHHHHHHHHH
T ss_pred -CEEEEEeCCCCCC--Cc-HHHHHHHHHh
Confidence 5999999999743 34 9999999876
|
| >1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A | Back alignment and structure |
|---|
Probab=99.89 E-value=1.4e-24 Score=228.07 Aligned_cols=184 Identities=20% Similarity=0.240 Sum_probs=137.3
Q ss_pred ccEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCC----chhHHHHH
Q 046651 4 FVRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPE----DIGICLRV 79 (392)
Q Consensus 4 ~~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~----d~gi~~~l 79 (392)
.|+|+|||+.+++++++.+.|.+ .|.+++++++.+ + ..+ ..+|+||| ||||++.... +.+ ..++
T Consensus 4 m~~I~Iid~~~g~~~~~~~~l~~-~G~~~~vv~~~~----~--~~l---~~~DglIL-pGgG~~~~~~~~l~~~~-~~~~ 71 (555)
T 1jvn_A 4 MPVVHVIDVESGNLQSLTNAIEH-LGYEVQLVKSPK----D--FNI---SGTSRLIL-PGVGNYGHFVDNLFNRG-FEKP 71 (555)
T ss_dssp SCEEEEECCSCSCCHHHHHHHHH-TTCEEEEESSGG----G--CCS---TTCSCEEE-EECSCHHHHHHHHHHTT-CHHH
T ss_pred CCEEEEEECCCCCHHHHHHHHHH-CCCEEEEECCcc----c--ccc---ccCCEEEE-CCCCchHhHhhhhhhcc-HHHH
Confidence 36899999877999999999998 799999887543 2 112 56999999 7778764211 111 1344
Q ss_pred HHH--cCCCCEEEEcHHHHHHHHHh------------CCeeeecC-----CCceeceeEEEecCCcccccCCCCCCcceE
Q 046651 80 LLE--CWDVPILGVCLGHQALGFVH------------GADIVHAP-----EPVHGRLSEIVHNGDRLFHDIPSGQNSGFK 140 (392)
Q Consensus 80 l~~--~~~iPILGVCLGhQ~La~a~------------Gg~V~~ap-----ep~hG~~s~i~h~g~~LF~~ips~~~s~f~ 140 (392)
|++ ..++||||||+|||+|+.++ |++|.+.+ .+++|+.. +... ++||++++.. +.
T Consensus 72 i~~~~~~g~PiLGIC~G~QlL~~a~~egg~~~~Lg~lgg~v~~~~~~~~~~~~~G~~~-v~~~-~~L~~~l~~~----~~ 145 (555)
T 1jvn_A 72 IREYIESGKPIMGIXVGLQALFAGSVESPKSTGLNYIDFKLSRFDDSEKPVPEIGWNS-CIPS-ENLFFGLDPY----KR 145 (555)
T ss_dssp HHHHHHTTCCEEEEEHHHHTTEEEETTBTTCCCCCSEEEEEEECCTTTSCSSEEEEEC-CCCC-TTCCTTCCTT----SC
T ss_pred HHHHHHcCCcEEEEchhhhhhhhhhhcCCCccccCCCCcEEEECCcCCCCCccccceE-EEEc-CHHHhhCCCC----ce
Confidence 443 24899999999999999998 78888765 35677753 3334 8899999876 78
Q ss_pred EEeeecceeecCC-----CCCCcEEEEEecCCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCccccccccc
Q 046651 141 VVRYHSLIIDADS-----LPKELIPIAWSNSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNR 215 (392)
Q Consensus 141 VvryHSl~V~~~s-----LP~~l~~iAwt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 215 (392)
++++||+.+.... ||+++.++|++++ +.
T Consensus 146 ~~~vHS~~~~~i~~~~~~L~~g~~vlA~s~~--------------~~--------------------------------- 178 (555)
T 1jvn_A 146 YYFVHSFAAILNSEKKKNLENDGWKIAKAKY--------------GS--------------------------------- 178 (555)
T ss_dssp EEEEESEECBCCHHHHHHHHHTTCEEEEEEE--------------TT---------------------------------
T ss_pred EEEEEEEEEEecccccccCCCCCEEEEEEcC--------------CC---------------------------------
Confidence 9999999986521 2567889999875 20
Q ss_pred CCcceEEEEEecCCCEEEEeccCCCCCCchhHHHHHHHHHHH
Q 046651 216 MRREVLMGIMHSTRPHYGVQFHPESIATCYGSKILRNFREIT 257 (392)
Q Consensus 216 ~~~~~vmgi~h~~~P~~GVQFHPEsiat~~G~~I~~NF~~l~ 257 (392)
+..+||+++ .++||||||||. ..+.|.+||+||++..
T Consensus 179 --D~~i~ai~~--~~i~GvQFHPE~-s~~~g~~l~~~Fl~~~ 215 (555)
T 1jvn_A 179 --EEFIAAVNK--NNIFATQFHPEK-SGKAGLNVIENFLKQQ 215 (555)
T ss_dssp --EEEEEEEEE--TTEEEESSBGGG-SHHHHHHHHHHHHTTC
T ss_pred --CCeEEEEEe--CCEEEEEeCcEe-cChhHHHHHHHHHhcc
Confidence 118999984 589999999997 4467999999999643
|
| >2iss_D Glutamine amidotransferase subunit PDXT; (beta/alpha)8-barrel, alpha/beta three layer sandwich, lyase transferase; HET: 5RP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.88 E-value=7.6e-23 Score=188.42 Aligned_cols=173 Identities=16% Similarity=0.157 Sum_probs=116.1
Q ss_pred CccEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchh---HHHHH
Q 046651 3 EFVRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIG---ICLRV 79 (392)
Q Consensus 3 ~~~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~g---i~~~l 79 (392)
+.|||+|||. ..+-..+++.|.+ .|++++++++. +++ ..+|+|||+||+ |....+.. -..++
T Consensus 19 ~~~~I~ii~~-~~~~~~~~~~l~~-~g~~~~~~~~~----~~l-------~~~d~iil~GG~--~~~~~~~~~~~~~~~~ 83 (208)
T 2iss_D 19 SHMKIGVLGV-QGDVREHVEALHK-LGVETLIVKLP----EQL-------DMVDGLILPGGE--STTMIRILKEMDMDEK 83 (208)
T ss_dssp -CCEEEEECS-SSCHHHHHHHHHH-TTCEEEEECSG----GGG-------GGCSEEEECSSC--HHHHHHHHHHTTCHHH
T ss_pred CCcEEEEEEC-CCchHHHHHHHHH-CCCEEEEeCCh----HHH-------hhCCEEEECCCc--HHHHHhhhhhhhHHHH
Confidence 4589999985 3333356788877 79999888643 333 359999997663 22111110 02344
Q ss_pred HHH--cCCCCEEEEcHHHHHHHHHhCCe-----------eeecCCCceeceeEEEecCCcccccCCCCCCcceEEEeeec
Q 046651 80 LLE--CWDVPILGVCLGHQALGFVHGAD-----------IVHAPEPVHGRLSEIVHNGDRLFHDIPSGQNSGFKVVRYHS 146 (392)
Q Consensus 80 l~~--~~~iPILGVCLGhQ~La~a~Gg~-----------V~~apep~hG~~s~i~h~g~~LF~~ips~~~s~f~VvryHS 146 (392)
|++ ..++||||||+|||+|+.++|+. +.+.+ +|+...... ...+|.+++.. .|.+.++|+
T Consensus 84 i~~~~~~g~PilGIC~G~QlL~~~~gg~~~~~lg~~~~~v~~~~---~g~~~~~~~-~~~~~~~~~~~---~~~~~~~h~ 156 (208)
T 2iss_D 84 LVERINNGLPVFATCAGVILLAKRIKNYSQEKLGVLDITVERNA---YGRQVESFE-TFVEIPAVGKD---PFRAIFIRA 156 (208)
T ss_dssp HHHHHHTTCCEEEETHHHHHHEEEEC---CCCCCCEEEEEETTT---TCSGGGCEE-EEECCGGGCSS---CEEEEESSC
T ss_pred HHHHHHCCCeEEEECHHHHHHHHHcCCCCCCCccccceEEEecC---CCccccccc-CCcccccCCCC---ceEEEEEeC
Confidence 554 24899999999999999999984 33222 222110000 12345666522 289999999
Q ss_pred ceeecCCCCCCcEEEEEecCCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCcccccccccCCcceEEEEEe
Q 046651 147 LIIDADSLPKELIPIAWSNSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGIMH 226 (392)
Q Consensus 147 l~V~~~sLP~~l~~iAwt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vmgi~h 226 (392)
+.++. +|++++++|++ + + .+||+++
T Consensus 157 ~~v~~--~~~~~~v~a~~-d--------------~--------------------------------------~~~a~~~ 181 (208)
T 2iss_D 157 PRIVE--TGKNVEILATY-D--------------Y--------------------------------------DPVLVKE 181 (208)
T ss_dssp CEEEE--ECSSCEEEEEE-T--------------T--------------------------------------EEEEEEE
T ss_pred ccccc--CCCCcEEEEEE-C--------------C--------------------------------------EEEEEEE
Confidence 99987 78899999998 4 4 7899986
Q ss_pred cCCCEEEEeccCCCCCCchhHHHHHHHHHHH
Q 046651 227 STRPHYGVQFHPESIATCYGSKILRNFREIT 257 (392)
Q Consensus 227 ~~~P~~GVQFHPEsiat~~G~~I~~NF~~l~ 257 (392)
.++||+|||||...+ .+||+||++.+
T Consensus 182 --~~i~GvQfHPE~~~~---~~l~~~fl~~~ 207 (208)
T 2iss_D 182 --GNILACTFHPELTDD---LRLHRYFLEMV 207 (208)
T ss_dssp --TTEEEESSCGGGSSC---CHHHHHHHTTC
T ss_pred --CCEEEEEeCCCcCCc---HHHHHHHHHHh
Confidence 479999999999654 38999998754
|
| >3nva_A CTP synthase; rossman fold, nucleotide binding, LIG; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.88 E-value=4.5e-23 Score=214.23 Aligned_cols=193 Identities=22% Similarity=0.291 Sum_probs=127.5
Q ss_pred CccEEEEE-------ECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHH----HhhhcccCCcCEEEECCCCCCCCCCC
Q 046651 3 EFVRTLLI-------DNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDI----CRYLYEENAFDNIVISPGPGSPACPE 71 (392)
Q Consensus 3 ~~~r~LlI-------DnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel----~~~l~e~~~fDgIVISpGPGsp~~~~ 71 (392)
..++|.|| |+|.|.+++|.++-.. ++..+.+.+.|..+.++- ...| ..+|+|||+||||.+..
T Consensus 292 ~~v~IalVGKY~~l~DaY~Sv~eAL~hag~~-~~~~V~I~wIds~~l~~~~~~~~~~L---~~~DgIIlpGG~G~~~~-- 365 (535)
T 3nva_A 292 KTINIALVGKYTKLKDSYISIKEAIYHASAY-IGVRPKLIWIESTDLESDTKNLNEIL---GNVNGIIVLPGFGSRGA-- 365 (535)
T ss_dssp CEEEEEEEESCTTSGGGGHHHHHHHHHHHHH-TTCEEEEEEEEGGGGCCSSSCCTTTT---TSCSEEEECCCCSSTTH--
T ss_pred CeeEEEEEecCcCCchhHHHHHHHHHHHHHH-cCCCeEEEEecchhccccccchhhhc---cCCCEEEECCCCCCccH--
Confidence 34788888 4444556667766665 688887776655422110 1122 67999999999998632
Q ss_pred chhHHHHHHHHc--CCCCEEEEcHHHHHHHHHhCCeeeecCC------------Cce------------ec-----eeEE
Q 046651 72 DIGICLRVLLEC--WDVPILGVCLGHQALGFVHGADIVHAPE------------PVH------------GR-----LSEI 120 (392)
Q Consensus 72 d~gi~~~ll~~~--~~iPILGVCLGhQ~La~a~Gg~V~~ape------------p~h------------G~-----~s~i 120 (392)
.+ ..++++.+ .++|+||||+|||+|+.++|+.|..... |+. |. ...+
T Consensus 366 -~g-~i~~ir~a~~~~~PiLGIClG~Qll~va~Gg~v~g~qda~s~Ef~~~~~~pvI~~m~eq~~~~~~ggtmrlg~h~v 443 (535)
T 3nva_A 366 -EG-KIKAIKYAREHNIPFLGICFGFQLSIVEFARDVLGLSEANSTEINPNTKDPVITLLDEQKNVTQLGGTMRLGAQKI 443 (535)
T ss_dssp -HH-HHHHHHHHHHHTCCEEEETHHHHHHHHHHHHTTTCCTTCEETTTCTTCSCEEEECBCSSSCBCSSCCCCEEEEEEE
T ss_pred -HH-HHHHHHHHHHcCCcEEEECcchhHHHHHhhccccCccCCcccccCCCCCCCeeecchhcccccccCCccccCceEE
Confidence 23 23444432 3999999999999999999999843211 110 10 1112
Q ss_pred E-ecCCcccccCCCCCCcceEEEeeecceeec---CCC-CCCcEEEEEecCCCCccccccCCCCCCCcccccchhhhhhc
Q 046651 121 V-HNGDRLFHDIPSGQNSGFKVVRYHSLIIDA---DSL-PKELIPIAWSNSADGFSYLGTLQSGEIPDAYQSQSRQKILL 195 (392)
Q Consensus 121 ~-h~g~~LF~~ips~~~s~f~VvryHSl~V~~---~sL-P~~l~~iAwt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (392)
. ..++.|.+-+.... +.-...|.+.|++ +.+ +++|.++||+++ +
T Consensus 444 ~l~~gS~L~~iyG~~~---I~erHrHryeVNs~h~q~l~~~GL~vsA~s~D--------------G-------------- 492 (535)
T 3nva_A 444 ILKEGTIAYQLYGKKV---VYERHRHRYEVNPKYVDILEDAGLVVSGISEN--------------G-------------- 492 (535)
T ss_dssp EECTTSHHHHHHTSSE---EEEEEEECCEECHHHHHHHHHTTCEEEEECTT--------------C--------------
T ss_pred EEcCCCcHHHHhCCCe---eeecccccceechHHHhhcccCCeEEEEEeCC--------------C--------------
Confidence 2 23444444333220 2222346777754 113 579999999988 6
Q ss_pred ccccccccCCCcccccccccCCcceEEEEEecCCC-EEEEeccCCCCCCch-hHHHHHHHHHHHH
Q 046651 196 SDISTQIKNGSYRHSIYSNRMRREVLMGIMHSTRP-HYGVQFHPESIATCY-GSKILRNFREITE 258 (392)
Q Consensus 196 ~~~~~~~~~g~~~~~~~~~~~~~~~vmgi~h~~~P-~~GVQFHPEsiat~~-G~~I~~NF~~l~~ 258 (392)
.+|||++.++| ++|||||||+.+++. ++.||++|++.|.
T Consensus 493 ------------------------~IEAIE~~~~pf~vGVQfHPE~~~~p~~~~~LF~~Fv~Aa~ 533 (535)
T 3nva_A 493 ------------------------LVEIIELPSNKFFVATQAHPEFKSRPTNPSPIYLGFIRAVA 533 (535)
T ss_dssp ------------------------CEEEEECTTSSCEEEESSCGGGGCCSSSCCHHHHHHHHHHT
T ss_pred ------------------------CEEEEEeCCCCcEEEEEeCCEecCCCCChhHHHHHHHHHHH
Confidence 89999999999 589999999988764 8999999999874
|
| >2abw_A PDX2 protein, glutaminase; PLP-synthase, vitamin B6, malaria, transferase; HET: PG4; 1.62A {Plasmodium falciparum} SCOP: c.23.16.1 PDB: 4ads_G | Back alignment and structure |
|---|
Probab=99.84 E-value=5.3e-21 Score=177.92 Aligned_cols=192 Identities=16% Similarity=0.167 Sum_probs=123.9
Q ss_pred CccEEEEEECCCCchHHHHHHHHHhC---CCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCC--CCc-hhHH
Q 046651 3 EFVRTLLIDNYDSYTYNIYQELSTIN---GVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPAC--PED-IGIC 76 (392)
Q Consensus 3 ~~~r~LlIDnyDSyT~nl~q~L~~v~---G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~--~~d-~gi~ 76 (392)
..|+|.||+....|+ ..++.|.+ + |+++++++. .+++ ..+|+|||+||+.+... ..+ ..-.
T Consensus 2 ~~~~I~Il~~~~~~~-~~~~~l~~-~~~~G~~~~~~~~----~~~l-------~~~dglil~GG~~~~~~~~~~~d~~~~ 68 (227)
T 2abw_A 2 SEITIGVLSLQGDFE-PHINHFIK-LQIPSLNIIQVRN----VHDL-------GLCDGLVIPGGESTTVRRCCAYENDTL 68 (227)
T ss_dssp CCEEEEEECTTSCCH-HHHHHHHT-TCCTTEEEEEECS----HHHH-------HTCSEEEECCSCHHHHHHHTTHHHHHH
T ss_pred CCcEEEEEeCCCCcH-HHHHHHHH-hccCCeEEEEEcC----cccc-------ccCCEEEECCCcHHHHHHHHHHhHHHH
Confidence 358899999876665 45777877 5 888877763 2444 34999999887743321 111 1123
Q ss_pred HHHHHH--cC-CCCEEEEcHHHHHHHHHhCCeeeecC---CCceeceeE-EEecC----------CcccccCCCCCCcce
Q 046651 77 LRVLLE--CW-DVPILGVCLGHQALGFVHGADIVHAP---EPVHGRLSE-IVHNG----------DRLFHDIPSGQNSGF 139 (392)
Q Consensus 77 ~~ll~~--~~-~iPILGVCLGhQ~La~a~Gg~V~~ap---ep~hG~~s~-i~h~g----------~~LF~~ips~~~s~f 139 (392)
.++|++ .. ++||||||+|||+|+.++|+.+.... .+..|.... +..+. ...+.++..-+.+.|
T Consensus 69 ~~~i~~~~~~~g~PilGIC~G~QlL~~~~gg~~~~~~~~~~~~lG~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~ 148 (227)
T 2abw_A 69 YNALVHFIHVLKKPIWGTCAGCILLSKNVENIKLYSNFGNKFSFGGLDITICRNFYGSQNDSFICSLNIISDSSAFKKDL 148 (227)
T ss_dssp HHHHHHHHHTSCCCEEEETHHHHHTEEEEECCCSCCTTGGGSCCCCEEEEEECCC----CCEEEEECEECCCCTTCCTTC
T ss_pred HHHHHHHHHhcCCEEEEECHHHHHHHHHhcCCccccccccccccCceeEEEEecCCCccccccccccccccccccCCCce
Confidence 455554 35 89999999999999999998763321 233443321 11111 112333310001238
Q ss_pred EEEeeecceeecCCC-CCCcEEEEEecCCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCcccccccccCCc
Q 046651 140 KVVRYHSLIIDADSL-PKELIPIAWSNSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRR 218 (392)
Q Consensus 140 ~VvryHSl~V~~~sL-P~~l~~iAwt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 218 (392)
.++..|++.|.. + |+++.++|++.. +. ..+
T Consensus 149 ~~~~~h~~~v~~--~~~~~~~vla~~~~--------------~~---------------------------------~g~ 179 (227)
T 2abw_A 149 TAACIRAPYIRE--ILSDEVKVLATFSH--------------ES---------------------------------YGP 179 (227)
T ss_dssp EEEEESCCEEEE--ECCTTCEEEEEEEE--------------TT---------------------------------TEE
T ss_pred eEEEEEcceEee--cCCCCcEEEEEccc--------------cc---------------------------------CCC
Confidence 888899999876 6 899999999863 10 001
Q ss_pred ceEEEEEecCCCEEEEeccCCCCCCchhHHHHHHHHHHHHHhh
Q 046651 219 EVLMGIMHSTRPHYGVQFHPESIATCYGSKILRNFREITEDYW 261 (392)
Q Consensus 219 ~~vmgi~h~~~P~~GVQFHPEsiat~~G~~I~~NF~~l~~~~~ 261 (392)
..++|++. .++||+|||||.... .+|++||++.+..+.
T Consensus 180 ~~~~a~~~--~~v~gvQfHPE~~~~---~~l~~~Fl~~~~~~~ 217 (227)
T 2abw_A 180 NIIAAVEQ--NNCLGTVFHPELLPH---TAFQQYFYEKVKNYK 217 (227)
T ss_dssp EEEEEEEE--TTEEEESSCGGGSSC---CHHHHHHHHHHHHHH
T ss_pred CceEEEEE--CCEEEEEECCeeCCC---cHHHHHHHHHHHhhh
Confidence 16788874 579999999998543 499999999986543
|
| >2vdj_A Homoserine O-succinyltransferase; methionine biosynthesis, amino-acid biosynthesis, homoserine transacetylase, homoserine transsuccinylase; 2.00A {Bacillus cereus} PDB: 2ghr_A | Back alignment and structure |
|---|
Probab=99.72 E-value=1.1e-16 Score=156.95 Aligned_cols=175 Identities=17% Similarity=0.164 Sum_probs=116.7
Q ss_pred CccEEEEEECCCCc---hHHHHHHHHHhCCCCeEE--EeCCCC---------------CHHHHHhhhcccCCcCEEEECC
Q 046651 3 EFVRTLLIDNYDSY---TYNIYQELSTINGVPPVV--VRNDEW---------------TWRDICRYLYEENAFDNIVISP 62 (392)
Q Consensus 3 ~~~r~LlIDnyDSy---T~nl~q~L~~v~G~~pvV--V~nd~~---------------~~eel~~~l~e~~~fDgIVISp 62 (392)
..|||+|+..-... -..+.++|.. .+..+.+ ++...- +++++.. ..|||+||+|
T Consensus 34 rplkI~ILnlmp~k~~te~qf~rlL~~-~~~qv~v~~~~~~~~~~~~~~~~hl~~~y~~f~~~~~-----~~~DglIITG 107 (301)
T 2vdj_A 34 RALKIAILNLMPTKQETEAQLLRLIGN-TPLQLDVHLLHMESHLSRNVAQEHLTSFYKTFRDIEN-----EKFDGLIITG 107 (301)
T ss_dssp CCEEEEEECCCSSHHHHHHHHHHHHTC-SSSCEEEEEECCCC------------CCEECHHHHTT-----SCEEEEEECC
T ss_pred CCceEEEEeCCCCcCchHHHHHHHhcC-CCCcEEEEEEeccCCCCCCccHHHHhhcccCcccccc-----cccCEEEECC
Confidence 45899999874332 2345555554 3444443 333211 2444433 7799999999
Q ss_pred CCCCCCCCCc---hhHHHHHHHH--cCCCCEEEEcHHHHHHHHH-hCCeeeecCCCceeceeE-EEecCCcccccCCCCC
Q 046651 63 GPGSPACPED---IGICLRVLLE--CWDVPILGVCLGHQALGFV-HGADIVHAPEPVHGRLSE-IVHNGDRLFHDIPSGQ 135 (392)
Q Consensus 63 GPGsp~~~~d---~gi~~~ll~~--~~~iPILGVCLGhQ~La~a-~Gg~V~~apep~hG~~s~-i~h~g~~LF~~ips~~ 135 (392)
||-.....++ +.-+.++++. ...+|+||||+|||+++++ .|+.....++...|.... +....++||.+++..
T Consensus 108 ap~~~~~~ed~~yw~el~~li~~~~~~~~~~lgIC~GaQ~~l~~~~G~~k~~~~~K~~Gv~~~~~~~~~~pL~~g~~~~- 186 (301)
T 2vdj_A 108 APVETLSFEEVDYWEELKRIMEYSKTNVTSTLHICWGAQAGLYHHYGVQKYPLKEKMFGVFEHEVREQHVKLLQGFDEL- 186 (301)
T ss_dssp CTTTTSCGGGSTTHHHHHHHHHHHHHHEEEEEEETHHHHHHHHHHHCCCCEEEEEEEEEEEEEEECCSSCGGGTTCCSE-
T ss_pred CCCcCCCcccCchHHHHHHHHHHHHHcCCcEEEEcHHHHHHHHHhCCCccccCCCCEEEEEEEEecCCCCccccCCCCc-
Confidence 9976544333 2333444444 2489999999999995555 555666666667775433 223467899999887
Q ss_pred CcceEEEee-----ecceeecCCCCCCcEEEEEecCCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCcccc
Q 046651 136 NSGFKVVRY-----HSLIIDADSLPKELIPIAWSNSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHS 210 (392)
Q Consensus 136 ~s~f~Vvry-----HSl~V~~~sLP~~l~~iAwt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 210 (392)
|.+... |...|.. +| +++++|.++. +
T Consensus 187 ---f~~phsr~~~~~~~~v~~--~p-ga~vLA~S~~--------------~----------------------------- 217 (301)
T 2vdj_A 187 ---FFAVHSRHTEVRESDIRE--VK-ELTLLANSEE--------------A----------------------------- 217 (301)
T ss_dssp ---EEEEEEEEEECCHHHHHT--CT-TEEEEEEETT--------------T-----------------------------
T ss_pred ---eEeeeEeccCcCHHHccC--CC-CCEEEEeCCC--------------C-----------------------------
Confidence 888654 4455555 55 9999999988 6
Q ss_pred cccccCCcceEEEEEecCCCEEEEeccCCCCC
Q 046651 211 IYSNRMRREVLMGIMHSTRPHYGVQFHPESIA 242 (392)
Q Consensus 211 ~~~~~~~~~~vmgi~h~~~P~~GVQFHPEsia 242 (392)
-+++++..+..+||+|||||...
T Consensus 218 ---------~~~~~~~~~~~~~~vQgHpEyd~ 240 (301)
T 2vdj_A 218 ---------GVHLVIGQEGRQVFALGHSEYSC 240 (301)
T ss_dssp ---------EEEEEEEGGGTEEEECSCTTCCT
T ss_pred ---------cceEEEecCCCEEEEECCCCCCH
Confidence 68888876778999999999843
|
| >2h2w_A Homoserine O-succinyltransferase; TM0881, (EC 2.3.1.46), HOM O-transsuccinylase, HTS, (TM0881), structural genomics; 2.52A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.2e-16 Score=157.17 Aligned_cols=178 Identities=15% Similarity=0.121 Sum_probs=115.2
Q ss_pred CccEEEEEECCCC---chHHHHHHHHHhCCCCeEE--EeCC--CC-------------CHHHHHhhhcccCCcCEEEECC
Q 046651 3 EFVRTLLIDNYDS---YTYNIYQELSTINGVPPVV--VRND--EW-------------TWRDICRYLYEENAFDNIVISP 62 (392)
Q Consensus 3 ~~~r~LlIDnyDS---yT~nl~q~L~~v~G~~pvV--V~nd--~~-------------~~eel~~~l~e~~~fDgIVISp 62 (392)
..|||+|+..-.. |-..+.++|.. .+..+.+ ++.. +. +++++.. ..|||+||+|
T Consensus 46 rplkI~ILnlmp~k~~te~qf~rlL~~-~~~qv~v~~~~~~~~~~~~~~~~hl~~~y~~f~~~~~-----~~~DglIITG 119 (312)
T 2h2w_A 46 RPLEILILNLMPDKIKTEIQLLRLLGN-TPLQVNVTLLYTETHKPKHTPIEHILKFYTTFSAVKD-----RKFDGFIITG 119 (312)
T ss_dssp CCEEEEEECCCSSHHHHHHHHHHHHHS-SSSCEEEEEECCSCCCCCSSCHHHHHHHCBCGGGTTT-----CCEEEEEECC
T ss_pred CCceEEEEeCCCCcCchHHHHHHHhcC-CCCcEEEEEEEccCCCCCCccHHHHhhccCCcccccc-----cCcCEEEECC
Confidence 4589999987433 23346666664 4544444 3332 11 1333322 6799999999
Q ss_pred CCCCCCCCCc---hhHHHHHHHH--cCCCCEEEEcHHHHHHHHHh-CCeeeecCCCceeceeEEEecCCcccccCCCCCC
Q 046651 63 GPGSPACPED---IGICLRVLLE--CWDVPILGVCLGHQALGFVH-GADIVHAPEPVHGRLSEIVHNGDRLFHDIPSGQN 136 (392)
Q Consensus 63 GPGsp~~~~d---~gi~~~ll~~--~~~iPILGVCLGhQ~La~a~-Gg~V~~apep~hG~~s~i~h~g~~LF~~ips~~~ 136 (392)
||-.....++ +.-+.++++. ...+|+||||+|||++++++ |+.....++...|.........++||.+++..
T Consensus 120 sP~~~~~~ed~~yw~el~~li~~~~~~~~p~LGIC~GaQ~~l~~~~G~~k~~~~~K~~Gv~~~~~~~~~pL~~g~~~~-- 197 (312)
T 2h2w_A 120 APVELLPFEEVDYWEELTEIMEWSRHNVYSTMFICWAAQAGLYYFYGIPKYELPQKLSGVYKHRVAKDSVLFRGHDDF-- 197 (312)
T ss_dssp CSCTTSCGGGSTTHHHHHHHHHHHHHHEEEEEEETHHHHHHHHHHHCCCCEEEEEEEEEEEEEEESSCCGGGTTCCSE--
T ss_pred CCCCCCCCccCchHHHHHHHHHHHHHcCCcEEEECHHHHHHHHHhCCCccccCCCCEEEEEEEEEcCCCccccCCCCc--
Confidence 9976544333 2333344443 24999999999999965555 55555666667776544333478999999887
Q ss_pred cceEEEeeecceeecCCC--CCCcEEEEEecCCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCcccccccc
Q 046651 137 SGFKVVRYHSLIIDADSL--PKELIPIAWSNSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSN 214 (392)
Q Consensus 137 s~f~VvryHSl~V~~~sL--P~~l~~iAwt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 214 (392)
|.+...|.-.+..+.+ +++++++|.++. +
T Consensus 198 --f~vphsr~~e~~~~~v~~~pga~vLA~S~~--------------~--------------------------------- 228 (312)
T 2h2w_A 198 --FWAPHSRYTEVKKEDIDKVPELEILAESDE--------------A--------------------------------- 228 (312)
T ss_dssp --EEEEEEEEEECCHHHHTTCC-CEEEEEETT--------------T---------------------------------
T ss_pred --eEeeEEeccccCHHHccCCCCCEEEEcCCC--------------C---------------------------------
Confidence 8887653323222112 249999999988 6
Q ss_pred cCCcceEEEEEecCCCEEEEeccCCCCC
Q 046651 215 RMRREVLMGIMHSTRPHYGVQFHPESIA 242 (392)
Q Consensus 215 ~~~~~~vmgi~h~~~P~~GVQFHPEsia 242 (392)
-+++++..+..+||||||||...
T Consensus 229 -----~~q~~~~~~~~~~~vQgHPEyd~ 251 (312)
T 2h2w_A 229 -----GVYVVANKSERQIFVTGHPEYDR 251 (312)
T ss_dssp -----EEEEEECSSSSEEEECSCTTCCT
T ss_pred -----cceEEEecCCCEEEEECCCCCCH
Confidence 68889876778999999999843
|
| >3ugj_A Phosphoribosylformylglycinamidine synthase; amidotransferase, glutaminase, thioester intermediate, ligas; HET: ADP; 1.78A {Salmonella enterica subsp} PDB: 1t3t_A* 3ujn_A* 3umm_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=8.1e-10 Score=125.66 Aligned_cols=207 Identities=14% Similarity=0.165 Sum_probs=118.0
Q ss_pred CccEEEEEECCCCch-HHHHHHHHHhCCCCeEEEeCCCC--CHHHHHhhhcccCCcCEEEECCCCCCCCCCCc-h-----
Q 046651 3 EFVRTLLIDNYDSYT-YNIYQELSTINGVPPVVVRNDEW--TWRDICRYLYEENAFDNIVISPGPGSPACPED-I----- 73 (392)
Q Consensus 3 ~~~r~LlIDnyDSyT-~nl~q~L~~v~G~~pvVV~nd~~--~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d-~----- 73 (392)
..+||+|||.+.++. +.++.+|.. .|.++++|...+. ..+++ ..||+|||+||..-.+.+.- .
T Consensus 1046 ~~pkVaIi~~~G~N~~~~~~~A~~~-aG~~~~~v~~~dl~~~~~~l-------~~~d~lvlPGGfSygD~l~~g~~~a~~ 1117 (1303)
T 3ugj_A 1046 ARPKVAVLREQGVNSHVEMAAAFHR-AGFDAIDVHMSDLLGGRIGL-------GNFHALVACGGFSYGDVLGAGEGWAKS 1117 (1303)
T ss_dssp CCCEEEEEECTTCCCHHHHHHHHHH-TTCEEEEEEHHHHHTTSCCG-------GGCSEEEECCSCGGGGTTSTTHHHHHH
T ss_pred CCCEEEEEecCCcCCHHHHHHHHHH-hCCceEEEeecccccCcccH-------hhCCEEEECCCCcchhhhccchhHHHH
Confidence 368999999999986 889999998 6999988753210 00122 45999999766422222210 0
Q ss_pred ----hHHHHHHHH---cCCCCEEEEcHHHHHHHHHh----CCe----eee-cCCCceeceeE--EEecCCcccccCCCCC
Q 046651 74 ----GICLRVLLE---CWDVPILGVCLGHQALGFVH----GAD----IVH-APEPVHGRLSE--IVHNGDRLFHDIPSGQ 135 (392)
Q Consensus 74 ----gi~~~ll~~---~~~iPILGVCLGhQ~La~a~----Gg~----V~~-apep~hG~~s~--i~h~g~~LF~~ips~~ 135 (392)
..+.+.+++ ..++|+||||+|||+|+.+. |++ +.+ ...-+..+... |..+.+.+++++. +
T Consensus 1118 ~l~~~~l~~~l~~~~~~~g~pvLGICnG~QlL~e~~gllPg~~~~p~l~~N~s~~f~~r~~~~~v~~~~s~~~~~~~-g- 1195 (1303)
T 3ugj_A 1118 ILFNHRVRDEFETFFHRPQTLALGVCNGCQMMSNLRELIPGSELWPRFVRNHSDRFEARFSLVEVTQSPSLLLQGMV-G- 1195 (1303)
T ss_dssp HHTSHHHHHHHHHHHHSSSCEEEEETHHHHHHHTTGGGSTTCTTCCEEECCTTSSCEEEEEEEEECCCSCGGGTTCT-T-
T ss_pred HHhchhHHHHHHHHHHhCCCcEEEECHHHHHHHHhcCcCCCCCCCCeEecCCCCCeEEeCeEEEECCCCChhhhccC-C-
Confidence 112223332 35999999999999999872 331 222 22223333333 3346778888875 3
Q ss_pred CcceEEEeeecce---e-ecCCC----CCCcEEEEEecCCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCc
Q 046651 136 NSGFKVVRYHSLI---I-DADSL----PKELIPIAWSNSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSY 207 (392)
Q Consensus 136 ~s~f~VvryHSl~---V-~~~sL----P~~l~~iAwt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 207 (392)
+.+.+.--|... . +++.| .++.+++-+.+.. + . .....-.||+++..
T Consensus 1196 -~~~~i~vaHgEG~~~~~~~~~l~~l~~~~~v~~rY~d~~-------------g-~-----~~~~yp~NPNGS~~----- 1250 (1303)
T 3ugj_A 1196 -SQMPIAVSHGEGRVEVRDDAHLAALESKGLVALRYVDNF-------------G-K-----VTETYPANPNGSPN----- 1250 (1303)
T ss_dssp -CEEEEEEEESSCEEECSSHHHHHHHHHTTCEEEEEBCTT-------------S-C-----BCCSTTTSSSCCGG-----
T ss_pred -CEEeeeeEeCCCCeeeCCHHHHHHHHhCCcEEEEEeCCC-------------C-C-----cccCCCCCCCCChh-----
Confidence 235555555422 1 11111 1244544444320 1 0 00001123332222
Q ss_pred ccccccccCCcceEEEEEecCCCEEEEeccCCCCCC--------------chhHHHHHHHHHH
Q 046651 208 RHSIYSNRMRREVLMGIMHSTRPHYGVQFHPESIAT--------------CYGSKILRNFREI 256 (392)
Q Consensus 208 ~~~~~~~~~~~~~vmgi~h~~~P~~GVQFHPEsiat--------------~~G~~I~~NF~~l 256 (392)
-|.||...+..++|++.|||+... ..+.+||+|=++.
T Consensus 1251 ------------~IaGi~s~~Grvlg~MpHPEr~~~~~~~~~~p~~~~~~~pw~~~F~na~~w 1301 (1303)
T 3ugj_A 1251 ------------GITAVTTENGRVTIMMPHPERVFRTVANSWHPENWGEDSPWMRIFRNARKQ 1301 (1303)
T ss_dssp ------------GEEEEECTTSSEEEESSBGGGSSBGGGCSSCCTTCCSBCTTHHHHHHHHHH
T ss_pred ------------hceEeECCCCCEEEEcCChHHccccccccCCCcccCCCCcHHHHHHHHHHh
Confidence 699999999999999999999532 1256777775543
|
| >3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=98.08 E-value=2.2e-06 Score=79.21 Aligned_cols=90 Identities=17% Similarity=0.098 Sum_probs=58.5
Q ss_pred ccEEEEEEC------CCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCC----Cch
Q 046651 4 FVRTLLIDN------YDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACP----EDI 73 (392)
Q Consensus 4 ~~r~LlIDn------yDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~----~d~ 73 (392)
.-|+++|+. ++.|...+.+.++. .|++++++.-...+.+++...| .+.|+|++ || |+.... .+.
T Consensus 27 ~~~i~~Ip~As~~~~~~~~~~s~~~a~~~-lG~~v~~~~i~~~~~~~~~~~l---~~ad~I~l-~G-G~~~~l~~~L~~~ 100 (206)
T 3l4e_A 27 GKTVTFIPTASTVEEVTFYVEAGKKALES-LGLLVEELDIATESLGEITTKL---RKNDFIYV-TG-GNTFFLLQELKRT 100 (206)
T ss_dssp TCEEEEECGGGGGCSCCHHHHHHHHHHHH-TTCEEEECCTTTSCHHHHHHHH---HHSSEEEE-CC-SCHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCCCHHHHHHHHHHHHHH-cCCeEEEEEecCCChHHHHHHH---HhCCEEEE-CC-CCHHHHHHHHHHC
Confidence 368999984 33477788888988 7999887753223344433333 45899999 44 554321 122
Q ss_pred hHHHHHHHH--cCCCCEEEEcHHHHHHHH
Q 046651 74 GICLRVLLE--CWDVPILGVCLGHQALGF 100 (392)
Q Consensus 74 gi~~~ll~~--~~~iPILGVCLGhQ~La~ 100 (392)
++ .+.|++ ..++|++|+|.|+|+++.
T Consensus 101 gl-~~~l~~~~~~G~p~~G~sAGa~~l~~ 128 (206)
T 3l4e_A 101 GA-DKLILEEIAAGKLYIGESAGAVITSP 128 (206)
T ss_dssp TH-HHHHHHHHHTTCEEEEETHHHHTTSS
T ss_pred Ch-HHHHHHHHHcCCeEEEECHHHHHhcc
Confidence 32 344444 258999999999999875
|
| >1fy2_A Aspartyl dipeptidase; serine protease, catalytic triad, strand-helix MO hydrolase; 1.20A {Salmonella typhimurium} SCOP: c.23.16.4 PDB: 1fye_A | Back alignment and structure |
|---|
Probab=97.98 E-value=2.4e-06 Score=79.85 Aligned_cols=87 Identities=16% Similarity=0.125 Sum_probs=55.4
Q ss_pred ccEEEEEECCC------CchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCC----Cch
Q 046651 4 FVRTLLIDNYD------SYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACP----EDI 73 (392)
Q Consensus 4 ~~r~LlIDnyD------SyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~----~d~ 73 (392)
..|+++||..- .|...+.+.|++ .|+++++++..+...+++. +.|+|+|+ | |+.... .+.
T Consensus 31 ~~~i~iI~~a~~~~~~~~~~~~~~~al~~-lG~~~~~v~~~~d~~~~l~-------~ad~I~lp-G-G~~~~~~~~l~~~ 100 (229)
T 1fy2_A 31 RRSAVFIPFAGVTQTWDEYTDKTAEVLAP-LGVNVTGIHRVADPLAAIE-------KAEIIIVG-G-GNTFQLLKESRER 100 (229)
T ss_dssp CCEEEEECTTCCSSCHHHHHHHHHHHHGG-GTCEEEETTSSSCHHHHHH-------HCSEEEEC-C-SCHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCCHHHHHHHHHHHHHH-CCCEEEEEeccccHHHHHh-------cCCEEEEC-C-CcHHHHHHHHHHC
Confidence 46899998752 455567788877 6988776643221125554 48999994 4 554321 111
Q ss_pred hHHHHHHHH--cCCCCEEEEcHHHHHHHHH
Q 046651 74 GICLRVLLE--CWDVPILGVCLGHQALGFV 101 (392)
Q Consensus 74 gi~~~ll~~--~~~iPILGVCLGhQ~La~a 101 (392)
++ .+.|++ ..++|++|+|.|+|+|+..
T Consensus 101 gl-~~~l~~~~~~G~p~~G~sAG~~~l~~~ 129 (229)
T 1fy2_A 101 GL-LAPMADRVKRGALYIGWSAGANLACPT 129 (229)
T ss_dssp TC-HHHHHHHHHTTCEEEEETHHHHHTSSB
T ss_pred Ch-HHHHHHHHHcCCEEEEECHHHHhhccc
Confidence 21 233443 2489999999999999874
|
| >1oi4_A Hypothetical protein YHBO; PFPI/THIJ family, complete proteome, PFPI, THIJ, bacterial targets at IGS-CNRS, france, BIGS, structural genomics; 2.03A {Escherichia coli} SCOP: c.23.16.2 | Back alignment and structure |
|---|
Probab=97.41 E-value=0.00023 Score=64.04 Aligned_cols=89 Identities=13% Similarity=0.247 Sum_probs=56.7
Q ss_pred cEEEEEECCCCch----HHHHHHHHHhCCCCeEEEeCCCCC----------------HHHHHhhhcccCCcCEEEECCCC
Q 046651 5 VRTLLIDNYDSYT----YNIYQELSTINGVPPVVVRNDEWT----------------WRDICRYLYEENAFDNIVISPGP 64 (392)
Q Consensus 5 ~r~LlIDnyDSyT----~nl~q~L~~v~G~~pvVV~nd~~~----------------~eel~~~l~e~~~fDgIVISpGP 64 (392)
+|++|+-. |.+. ..+++.|.+ .|.++.++..+.-. ++++. ...||.|||.||+
T Consensus 24 ~kV~ill~-~g~~~~e~~~~~~~l~~-ag~~v~~vs~~~~~~v~~~~g~~~v~~~~~l~~~~-----~~~~D~livpGG~ 96 (193)
T 1oi4_A 24 KKIAVLIT-DEFEDSEFTSPADEFRK-AGHEVITIEKQAGKTVKGKKGEASVTIDKSIDEVT-----PAEFDALLLPGGH 96 (193)
T ss_dssp CEEEEECC-TTBCTHHHHHHHHHHHH-TTCEEEEEESSTTCEEECTTSSCEEECCEEGGGCC-----GGGCSEEEECCBT
T ss_pred CEEEEEEC-CCCCHHHHHHHHHHHHH-CCCEEEEEECCCCcceecCCCCeEEECCCChHHCC-----cccCCEEEECCCc
Confidence 56777754 4442 245677776 68888888655321 11211 1469999998775
Q ss_pred CCCCCCCchhHHHHHHHH--cCCCCEEEEcHHHHHHHHH
Q 046651 65 GSPACPEDIGICLRVLLE--CWDVPILGVCLGHQALGFV 101 (392)
Q Consensus 65 Gsp~~~~d~gi~~~ll~~--~~~iPILGVCLGhQ~La~a 101 (392)
| +....+..-..++|++ ..++||.|||.|.|+|+.+
T Consensus 97 ~-~~~l~~~~~l~~~l~~~~~~gk~i~aIC~G~~lLa~a 134 (193)
T 1oi4_A 97 S-PDYLRGDNRFVTFTRDFVNSGKPVFAICHGPQLLISA 134 (193)
T ss_dssp H-HHHHTTSHHHHHHHHHHHHTTCCEEEETTTHHHHHHH
T ss_pred C-HHHhhhCHHHHHHHHHHHHcCCEEEEECHHHHHHHHC
Confidence 4 2211112334566665 3589999999999999987
|
| >2vrn_A Protease I, DR1199; cysteine sulfenic acid, DJ-1/THIJ/PFPI superfamily, protease hydrolase, stress response; 2.15A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=96.93 E-value=0.00066 Score=60.28 Aligned_cols=91 Identities=11% Similarity=0.144 Sum_probs=56.3
Q ss_pred ccEEEEEECCCCch----HHHHHHHHHhCCCCeEEEeCCCC-------------------CHHHHHhhhcccCCcCEEEE
Q 046651 4 FVRTLLIDNYDSYT----YNIYQELSTINGVPPVVVRNDEW-------------------TWRDICRYLYEENAFDNIVI 60 (392)
Q Consensus 4 ~~r~LlIDnyDSyT----~nl~q~L~~v~G~~pvVV~nd~~-------------------~~eel~~~l~e~~~fDgIVI 60 (392)
.+||+|+- +|.+. ...++.|.. .|.++.++..+.- +++++.. ..||.|||
T Consensus 9 ~~~v~il~-~~g~~~~e~~~~~~~l~~-ag~~v~~vs~~~~~v~~~~~~~~~g~~v~~~~~~~~~~~-----~~~D~liv 81 (190)
T 2vrn_A 9 GKKIAILA-ADGVEEIELTSPRAAIEA-AGGTTELISLEPGEIQSMKGDIEPQEKYRVDHVVSEVQV-----SDYDGLLL 81 (190)
T ss_dssp TCEEEEEC-CTTCBHHHHHHHHHHHHH-TTCEEEEEESSSSEEEEEETTTEEEEEEECSEEGGGCCG-----GGCSEEEE
T ss_pred CCEEEEEe-CCCCCHHHHHHHHHHHHH-CCCEEEEEecCCCccccccccccCCcEEeCCCChhhCCh-----hhCCEEEE
Confidence 46788874 45553 235566766 6888877755421 1222211 46999999
Q ss_pred CCCCCCCCCCCchhHHHHHHHH--cCCCCEEEEcHHHHHHHHH
Q 046651 61 SPGPGSPACPEDIGICLRVLLE--CWDVPILGVCLGHQALGFV 101 (392)
Q Consensus 61 SpGPGsp~~~~d~gi~~~ll~~--~~~iPILGVCLGhQ~La~a 101 (392)
.||++.+..........++|++ ..++||.+||-|-++|+.+
T Consensus 82 pGG~~~~~~~~~~~~l~~~l~~~~~~gk~i~aiC~G~~~La~a 124 (190)
T 2vrn_A 82 PGGTVNPDKLRLEEGAMKFVRDMYDAGKPIAAICHGPWSLSET 124 (190)
T ss_dssp CCCTHHHHHHTTCHHHHHHHHHHHHTTCCEEEC-CTTHHHHHT
T ss_pred CCCchhHHHHhhCHHHHHHHHHHHHcCCEEEEECHhHHHHHhC
Confidence 8776443321222334566665 3589999999999999986
|
| >3l18_A Intracellular protease I; gatase1_PFPI_LIKE, hydrolase; 1.78A {Thermococcus onnurineus} SCOP: c.23.16.2 PDB: 1g2i_A | Back alignment and structure |
|---|
Probab=96.85 E-value=0.0012 Score=57.46 Aligned_cols=90 Identities=17% Similarity=0.248 Sum_probs=56.5
Q ss_pred ccEEEEEECCCCch----HHHHHHHHHhCCCCeEEEeCCCC--------------CHHHHHhhhcccCCcCEEEECCCCC
Q 046651 4 FVRTLLIDNYDSYT----YNIYQELSTINGVPPVVVRNDEW--------------TWRDICRYLYEENAFDNIVISPGPG 65 (392)
Q Consensus 4 ~~r~LlIDnyDSyT----~nl~q~L~~v~G~~pvVV~nd~~--------------~~eel~~~l~e~~~fDgIVISpGPG 65 (392)
.|||+|+-. |.+. ...++.|.. .|.++.++..+.- +++++.. ..||.|||.||+|
T Consensus 2 ~~ki~il~~-~g~~~~e~~~~~~~l~~-ag~~v~~vs~~~~~v~~~~g~~i~~~~~~~~~~~-----~~~D~livpGG~~ 74 (168)
T 3l18_A 2 SMKVLFLSA-DGFEDLELIYPLHRIKE-EGHEVYVASFQRGKITGKHGYSVNVDLTFEEVDP-----DEFDALVLPGGKA 74 (168)
T ss_dssp CCEEEEECC-TTBCHHHHHHHHHHHHH-TTCEEEEEESSSEEEECTTSCEEEECEEGGGCCG-----GGCSEEEECCBSH
T ss_pred CcEEEEEeC-CCccHHHHHHHHHHHHH-CCCEEEEEECCCCEEecCCCcEEeccCChhHCCH-----hhCCEEEECCCcC
Confidence 477777744 3432 245677766 6888887765431 1233221 3599999977764
Q ss_pred CCCCCCchhHHHHHHHH--cCCCCEEEEcHHHHHHHHH
Q 046651 66 SPACPEDIGICLRVLLE--CWDVPILGVCLGHQALGFV 101 (392)
Q Consensus 66 sp~~~~d~gi~~~ll~~--~~~iPILGVCLGhQ~La~a 101 (392)
. .....-....++|++ ..++||.+||-|.++|+.+
T Consensus 75 ~-~~~~~~~~l~~~l~~~~~~~k~i~aiC~G~~~La~a 111 (168)
T 3l18_A 75 P-EIVRLNEKAVMITRRMFEDDKPVASICHGPQILISA 111 (168)
T ss_dssp H-HHHTTCHHHHHHHHHHHHTTCCEEEETTTHHHHHHT
T ss_pred H-HHhccCHHHHHHHHHHHHCCCEEEEECHhHHHHHHC
Confidence 2 211122234566665 3599999999999999986
|
| >2ab0_A YAJL; DJ-1/THIJ superfamily, alpha-beta hydrolase fold, unknown function; 1.10A {Escherichia coli} SCOP: c.23.16.2 | Back alignment and structure |
|---|
Probab=96.58 E-value=0.0017 Score=58.77 Aligned_cols=91 Identities=13% Similarity=0.132 Sum_probs=56.4
Q ss_pred cEEEEEECCCCch---HHHHHHHHHhCCCCeEEEeCCCC-----------------CHHHHHhhhcccCCcCEEEECCCC
Q 046651 5 VRTLLIDNYDSYT---YNIYQELSTINGVPPVVVRNDEW-----------------TWRDICRYLYEENAFDNIVISPGP 64 (392)
Q Consensus 5 ~r~LlIDnyDSyT---~nl~q~L~~v~G~~pvVV~nd~~-----------------~~eel~~~l~e~~~fDgIVISpGP 64 (392)
+|++|+=..+... ...++.|.+ .|.++.++..+.- +++++.. ..||.|||.||+
T Consensus 3 ~kV~ill~~g~~~~e~~~~~~~l~~-ag~~v~~vs~~~~~~~~v~~~~g~~v~~~~~l~~~~~-----~~~D~livpGG~ 76 (205)
T 2ab0_A 3 ASALVCLAPGSEETEAVTTIDLLVR-GGIKVTTASVASDGNLAITCSRGVKLLADAPLVEVAD-----GEYDVIVLPGGI 76 (205)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHHH-TTCEEEEEECSSTTCCEEECTTSCEEECSEEHHHHTT-----SCCSEEEECCCH
T ss_pred cEEEEEEcCCCcHHHHHHHHHHHHH-CCCEEEEEeCCCCCCceeecCCCeEEecCCCHHHCCc-----ccCCEEEECCCc
Confidence 3676665432222 234567776 6888888765431 2344422 579999998776
Q ss_pred CCCCCCCchhHHHHHHHH--cCCCCEEEEcHHH-HHHHHH
Q 046651 65 GSPACPEDIGICLRVLLE--CWDVPILGVCLGH-QALGFV 101 (392)
Q Consensus 65 Gsp~~~~d~gi~~~ll~~--~~~iPILGVCLGh-Q~La~a 101 (392)
+.+....+.....++|++ ..++||.+||-|- ++|+.+
T Consensus 77 ~~~~~l~~~~~l~~~l~~~~~~gk~i~aiC~G~~~lLa~a 116 (205)
T 2ab0_A 77 KGAECFRDSTLLVETVKQFHRSGRIVAAICAAPATVLVPH 116 (205)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHTTCEEEEETHHHHHHTTTT
T ss_pred ccHHHhccCHHHHHHHHHHHHcCCEEEEECHhHHHHHHHC
Confidence 544321122334566665 3589999999999 898864
|
| >2rk3_A Protein DJ-1; parkinson'S disease, THIJ, PFPI, chaperone, cytoplasm, disease mutation, nucleus, oncogene, oxidation, parkinson disease; 1.05A {Homo sapiens} PDB: 1pdv_A 1pdw_A 3cy6_A 1pe0_A 3cza_A 3cyf_A 2rk4_A 3cz9_A* 3ezg_A 3f71_A 3sf8_A 1p5f_A 1ps4_A 1q2u_A 1soa_A 1ucf_A 2or3_A 3bwe_A 3b38_A 3b36_A ... | Back alignment and structure |
|---|
Probab=96.58 E-value=0.0026 Score=57.04 Aligned_cols=90 Identities=18% Similarity=0.142 Sum_probs=56.4
Q ss_pred cEEEEEECCCCch----HHHHHHHHHhCCCCeEEEeCCCC---------------CHHHH-HhhhcccCCcCEEEECCCC
Q 046651 5 VRTLLIDNYDSYT----YNIYQELSTINGVPPVVVRNDEW---------------TWRDI-CRYLYEENAFDNIVISPGP 64 (392)
Q Consensus 5 ~r~LlIDnyDSyT----~nl~q~L~~v~G~~pvVV~nd~~---------------~~eel-~~~l~e~~~fDgIVISpGP 64 (392)
+|++|+=. |.|. ...++.|.+ .|.++.++..+.- +++++ .. ..||.|||.||+
T Consensus 4 ~~v~ill~-~g~~~~e~~~~~~~l~~-ag~~v~~vs~~~~~~v~~~~g~~v~~d~~l~~~~~~-----~~~D~livpGG~ 76 (197)
T 2rk3_A 4 KRALVILA-KGAEEMETVIPVDVMRR-AGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKE-----GPYDVVVLPGGN 76 (197)
T ss_dssp CEEEEEEC-TTCCHHHHHHHHHHHHH-TTCEEEEEETTCSSCEECTTSCEECCSEEHHHHHTT-----CCCSEEEECCCH
T ss_pred CEEEEEEC-CCCcHHHHHHHHHHHHH-CCCEEEEEEcCCCCccccCCCCEEeCCcCHHHcCCc-----cCCCEEEECCCc
Confidence 36666644 3442 235677776 6888888764421 23443 21 579999998776
Q ss_pred CCCCCCCchhHHHHHHHH--cCCCCEEEEcHHHHHHHHH
Q 046651 65 GSPACPEDIGICLRVLLE--CWDVPILGVCLGHQALGFV 101 (392)
Q Consensus 65 Gsp~~~~d~gi~~~ll~~--~~~iPILGVCLGhQ~La~a 101 (392)
+.+....+.....++|++ ..++||.+||-|-++|+.+
T Consensus 77 ~~~~~l~~~~~~~~~l~~~~~~gk~i~aiC~G~~~La~a 115 (197)
T 2rk3_A 77 LGAQNLSESAAVKEILKEQENRKGLIATICAGPTALLAH 115 (197)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHTTCEEEEETTTHHHHHHT
T ss_pred hhHHHhhhCHHHHHHHHHHHHcCCEEEEECHHHHHHHHC
Confidence 433221122334566665 3589999999999999986
|
| >4hcj_A THIJ/PFPI domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta-alpha sandwich; HET: MSE; 1.12A {Brachyspira murdochii} | Back alignment and structure |
|---|
Probab=96.58 E-value=0.0034 Score=56.31 Aligned_cols=90 Identities=12% Similarity=0.070 Sum_probs=57.3
Q ss_pred cEEEEEECCCCch----HHHHHHHHHhCCCCeEEEeCCCC--------------CHHHHHhhhcccCCcCEEEECCCCCC
Q 046651 5 VRTLLIDNYDSYT----YNIYQELSTINGVPPVVVRNDEW--------------TWRDICRYLYEENAFDNIVISPGPGS 66 (392)
Q Consensus 5 ~r~LlIDnyDSyT----~nl~q~L~~v~G~~pvVV~nd~~--------------~~eel~~~l~e~~~fDgIVISpGPGs 66 (392)
.++++|=-.|.|- .--++.|++ .|.+++++..+.- +++++.. .+||.|||.||+|.
T Consensus 8 ~~~v~il~~~gFe~~E~~~p~~~l~~-ag~~V~~~s~~~~~v~~~~G~~v~~d~~l~~v~~-----~~yD~liiPGG~g~ 81 (177)
T 4hcj_A 8 NNILYVMSGQNFQDEEYFESKKIFES-AGYKTKVSSTFIGTAQGKLGGMTNIDLLFSEVDA-----VEFDAVVFVGGIGC 81 (177)
T ss_dssp CEEEEECCSEEECHHHHHHHHHHHHH-TTCEEEEEESSSEEEEETTSCEEEECEEGGGCCG-----GGCSEEEECCSGGG
T ss_pred CCEEEEECCCCccHHHHHHHHHHHHH-CCCEEEEEECCCCeEeeCCCCEEecCccHHHCCH-----hHCCEEEECCCccH
Confidence 4566553334442 235577777 7998887765431 2334332 57999999888864
Q ss_pred CCCCCchhHHHHHHHH--cCCCCEEEEcHHHHHHHHH
Q 046651 67 PACPEDIGICLRVLLE--CWDVPILGVCLGHQALGFV 101 (392)
Q Consensus 67 p~~~~d~gi~~~ll~~--~~~iPILGVCLGhQ~La~a 101 (392)
..-..+ ....+++++ ..++||.+||-|-++|+.+
T Consensus 82 ~~l~~~-~~~~~~l~~~~~~~k~iaaIC~g~~~La~a 117 (177)
T 4hcj_A 82 ITLWDD-WRTQGLAKLFLDNQKIVAGIGSGVVIMANA 117 (177)
T ss_dssp GGGTTC-HHHHHHHHHHHHTTCEEEEETTHHHHHHHT
T ss_pred HHHhhC-HHHHHHHHHHHHhCCEEEEecccHHHHHHC
Confidence 322222 334566665 3589999999999999875
|
| >3cne_A Putative protease I; structural genomics, PSI-2, MCSG, protein struct initiative, midwest center for structural genomics; HET: FMN; 1.99A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=96.52 E-value=0.0056 Score=53.56 Aligned_cols=91 Identities=14% Similarity=0.149 Sum_probs=55.3
Q ss_pred cEEEEEECCCCch---HHHHHHHHHhCCCCeEEEeCCC---------------CCHHHH--HhhhcccCCcCEEEECCC-
Q 046651 5 VRTLLIDNYDSYT---YNIYQELSTINGVPPVVVRNDE---------------WTWRDI--CRYLYEENAFDNIVISPG- 63 (392)
Q Consensus 5 ~r~LlIDnyDSyT---~nl~q~L~~v~G~~pvVV~nd~---------------~~~eel--~~~l~e~~~fDgIVISpG- 63 (392)
+|++|+-.....- +.....+.+ .|.++.++..+. .+++++ .. ..||.|||.||
T Consensus 3 ~~v~ill~~~~~g~~~~~~~e~~~~-~~~~v~~vs~~~~~~v~~~~g~~v~~d~~~~~~~~~~-----~~~D~livpGG~ 76 (175)
T 3cne_A 3 KKVAVLAVNPVNGCGLFQYLEAFFE-NGISYKVFAVSDTKEIKTNSGMVLIVDDVIANLKGHE-----DEFDALVFSCGD 76 (175)
T ss_dssp CEEEEEECSSBCHHHHHHHHHHHHH-TTCEEEEEESSSSSEEEBTTSCEEECSEEGGGGTTCG-----GGCSEEEEECCT
T ss_pred cEEEEEEecCcCCCccchhhheeee-CCCEEEEEECCCCCceecCCCeEEEeccCHHHhccCc-----ccCCEEEECCCc
Confidence 5777775431112 344444443 688888886652 123333 11 46999999877
Q ss_pred -CCCCCCCC---chhHHHHHHHH--cCCCCEEEEcHHHHHHHHH
Q 046651 64 -PGSPACPE---DIGICLRVLLE--CWDVPILGVCLGHQALGFV 101 (392)
Q Consensus 64 -PGsp~~~~---d~gi~~~ll~~--~~~iPILGVCLGhQ~La~a 101 (392)
...+.... ......++|++ ..++||.+||-|-++|+.+
T Consensus 77 ~~~~~~~l~~~~~~~~~~~~l~~~~~~gk~i~aiC~G~~~La~a 120 (175)
T 3cne_A 77 AVPVFQQYANQPYNVDLMEVIKTFGEKGKMMIGHCAGAMMFDFT 120 (175)
T ss_dssp TGGGGGGCTTCHHHHHHHHHHHHHHHTTCEEEEETTHHHHHHHT
T ss_pred CcccHHHHhhcccCHHHHHHHHHHHHCCCEEEEECHHHHHHHHC
Confidence 42333222 22335566665 3589999999999999986
|
| >1vhq_A Enhancing lycopene biosynthesis protein 2; structural genomics, unknown function; 1.65A {Escherichia coli} SCOP: c.23.16.2 PDB: 1oy1_A | Back alignment and structure |
|---|
Probab=96.44 E-value=0.0037 Score=57.72 Aligned_cols=50 Identities=12% Similarity=0.133 Sum_probs=35.0
Q ss_pred CCcCEEEECCCCCCCCCCCc----------hhHHHHHHHH--cCCCCEEEEcHHHHHHHHHh
Q 046651 53 NAFDNIVISPGPGSPACPED----------IGICLRVLLE--CWDVPILGVCLGHQALGFVH 102 (392)
Q Consensus 53 ~~fDgIVISpGPGsp~~~~d----------~gi~~~ll~~--~~~iPILGVCLGhQ~La~a~ 102 (392)
..||.|||.||.|......+ -....++|++ ..++||.+||-|-++|+.++
T Consensus 89 ~~~D~livpGG~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~gk~vaaIC~G~~~La~aL 150 (232)
T 1vhq_A 89 AELDALIVPGGFGAAKNLSNFASLGSECTVDRELKALAQAMHQAGKPLGFMCIAPAMLPKIF 150 (232)
T ss_dssp GGCSEEEECCSTHHHHTSBCHHHHGGGCCBCHHHHHHHHHHHHTTCCEEEETTGGGGHHHHC
T ss_pred ccCCEEEECCCcchHHHHhhhhccccccccCHHHHHHHHHHHHcCCEEEEECHHHHHHHHHh
Confidence 46999999888764211111 2334566665 35999999999999999873
|
| >3l3b_A ES1 family protein; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography, isopr biosynthesis; 1.90A {Ehrlichia chaffeensis} | Back alignment and structure |
|---|
Probab=95.94 E-value=0.021 Score=53.63 Aligned_cols=96 Identities=17% Similarity=0.120 Sum_probs=57.3
Q ss_pred EEEEEEC----CCCchH----HHHHHHHHhCCCCeEEEeCCCC-----------------CHH-HHH-------hhhcc-
Q 046651 6 RTLLIDN----YDSYTY----NIYQELSTINGVPPVVVRNDEW-----------------TWR-DIC-------RYLYE- 51 (392)
Q Consensus 6 r~LlIDn----yDSyT~----nl~q~L~~v~G~~pvVV~nd~~-----------------~~e-el~-------~~l~e- 51 (392)
||++|=. ||.|.. ..++.|++ .|.+++++..+.- ... +.. ..|-+
T Consensus 25 kV~ill~~~~~~dG~e~~E~~~p~~vL~~-aG~~V~~~S~~~g~~~~~~~~~g~~v~~s~g~~v~~d~~~~~~~~~l~dv 103 (242)
T 3l3b_A 25 NSAVILAGCGHMDGSEIREAVLVMLELDR-HNVNFKCFAPNKNQKQVVDHKKKESVGEVRNILVESARIARGSVYDIEQI 103 (242)
T ss_dssp EEEEECCCSSTTTSCCHHHHHHHHHHHHH-TTCEEEEEECSSBCSCEEETTTTEEESCCCBHHHHHHHHTTTCEEEGGGC
T ss_pred EEEEEEecCCCCCCeeHHHHHHHHHHHHH-CCCEEEEEecCCCcccccccccCccccccCCeEEecchhccccCCChHHC
Confidence 6777754 455532 35677777 7999888765431 010 100 00111
Q ss_pred -cCCcCEEEECCCCCCC----CC-------CCchhHHHHHHHH--cCCCCEEEEcHHHHHHHHHh
Q 046651 52 -ENAFDNIVISPGPGSP----AC-------PEDIGICLRVLLE--CWDVPILGVCLGHQALGFVH 102 (392)
Q Consensus 52 -~~~fDgIVISpGPGsp----~~-------~~d~gi~~~ll~~--~~~iPILGVCLGhQ~La~a~ 102 (392)
...||.|||.||.|.. .. ...-....++|++ ..++||.+||-|-.+|+.+-
T Consensus 104 ~~~~~D~livPGG~~~~~~L~~~~~~~~~~~~~~~~l~~~lr~~~~~gk~IaaIC~G~~~La~ag 168 (242)
T 3l3b_A 104 RVEEFDMLVIPGGYGVAKNFSNLFDEDKENDYILPEFKNAVREFYNAKKPIGAVCISPAVVVALL 168 (242)
T ss_dssp CGGGCSEEEECCCHHHHHHHBSTTSCC--CCCBCHHHHHHHHHHHHTTCCEEEETTHHHHHHHHH
T ss_pred CcccCCEEEEcCCcchhhhhhhhhccccccccCCHHHHHHHHHHHHcCCEEEEECHHHHHHHHhC
Confidence 1469999998886531 10 1112334566655 35999999999999999885
|
| >4e08_A DJ-1 beta; flavodoxin-like fold, stress response, motor protein; 2.00A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=95.68 E-value=0.012 Score=52.25 Aligned_cols=89 Identities=16% Similarity=0.174 Sum_probs=54.7
Q ss_pred EEEEEECCCCch-H---HHHHHHHHhCCCCeEEEeCCC--C-------------CHHHHHhhhcccCCcCEEEECCCCCC
Q 046651 6 RTLLIDNYDSYT-Y---NIYQELSTINGVPPVVVRNDE--W-------------TWRDICRYLYEENAFDNIVISPGPGS 66 (392)
Q Consensus 6 r~LlIDnyDSyT-~---nl~q~L~~v~G~~pvVV~nd~--~-------------~~eel~~~l~e~~~fDgIVISpGPGs 66 (392)
|++++=. |.|. . ..++.|++ .|.++.++..+. + +++++.. ..||.|||.||.+.
T Consensus 7 kv~ill~-~g~~~~e~~~~~~~l~~-ag~~v~~~s~~~~~~v~~~~g~~i~~d~~l~~~~~-----~~~D~livpGG~~~ 79 (190)
T 4e08_A 7 SALVILA-PGAEEMEFIIAADVLRR-AGIKVTVAGLNGGEAVKCSRDVQILPDTSLAQVAS-----DKFDVVVLPGGLGG 79 (190)
T ss_dssp EEEEEEC-TTCCHHHHHHHHHHHHH-TTCEEEEEESSSSSCEECTTSCEEECSEETGGGTT-----CCCSEEEECCCHHH
T ss_pred EEEEEEC-CCchHHHHHHHHHHHHH-CCCEEEEEECCCCcceecCCCcEEECCCCHHHCCc-----ccCCEEEECCCChH
Confidence 5666643 4442 2 35577776 688888886654 1 1334322 46999999776322
Q ss_pred CCCCCchhHHHHHHHH--cCCCCEEEEcHHHHHHHHH
Q 046651 67 PACPEDIGICLRVLLE--CWDVPILGVCLGHQALGFV 101 (392)
Q Consensus 67 p~~~~d~gi~~~ll~~--~~~iPILGVCLGhQ~La~a 101 (392)
+....+-....++|++ ..++||.+||-|-++|+.+
T Consensus 80 ~~~~~~~~~~~~~l~~~~~~~k~i~aiC~G~~~La~a 116 (190)
T 4e08_A 80 SNAMGESSLVGDLLRSQESGGGLIAAICAAPTVLAKH 116 (190)
T ss_dssp HHHHHHCHHHHHHHHHHHHTTCEEEEETTTHHHHHHT
T ss_pred HHHhhhCHHHHHHHHHHHHCCCEEEEECHHHHHHHHC
Confidence 2111112234566665 3599999999999999975
|
| >1u9c_A APC35852; structural genomics, protein structure initiative, MCSG, PAR disease, chaperone, cysteine protease, PSI; 1.35A {Geobacillus stearothermophilus} SCOP: c.23.16.2 | Back alignment and structure |
|---|
Probab=95.22 E-value=0.018 Score=52.25 Aligned_cols=49 Identities=27% Similarity=0.211 Sum_probs=34.7
Q ss_pred CCcCEEEECCCCCCCCCCCchhHHHHHHHH--cCCCCEEEEcHHHHHHHHH
Q 046651 53 NAFDNIVISPGPGSPACPEDIGICLRVLLE--CWDVPILGVCLGHQALGFV 101 (392)
Q Consensus 53 ~~fDgIVISpGPGsp~~~~d~gi~~~ll~~--~~~iPILGVCLGhQ~La~a 101 (392)
..||.|||.||++......+-....++|++ ..++||.+||-|-++|+.+
T Consensus 88 ~~~D~livpGG~~~~~~l~~~~~l~~~l~~~~~~~k~iaaiC~G~~~La~a 138 (224)
T 1u9c_A 88 HGFDAIFLPGGHGTMFDFPDNETLQYVLQQFAEDGRIIAAVCHGPSGLVNA 138 (224)
T ss_dssp SSCSEEEECCCTTHHHHSTTCHHHHHHHHHHHHTTCEEEEETTGGGGGTTC
T ss_pred hhCCEEEECCCcchHHHhhcCHHHHHHHHHHHHCCCEEEEEChHHHHHHHc
Confidence 479999998887753222222335566665 3589999999999988865
|
| >3f5d_A Protein YDEA; unknow protein, PSI-II, nysgrc, structural genomics, protein structure initiative; 2.06A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=95.07 E-value=0.072 Score=48.47 Aligned_cols=75 Identities=15% Similarity=0.104 Sum_probs=49.2
Q ss_pred HHHHHHHHHhCCCCeEEEeCCCC-------------CHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHH--
Q 046651 18 YNIYQELSTINGVPPVVVRNDEW-------------TWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLE-- 82 (392)
Q Consensus 18 ~nl~q~L~~v~G~~pvVV~nd~~-------------~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~-- 82 (392)
...++.|.+..|.++.++..+.- +++++ ...||.|||.||+|... .+ ....++|++
T Consensus 20 ~~~~~~l~~~~~~~v~~vs~~~~V~~~~G~~v~~d~~l~~~------~~~~D~livpGG~~~~~--~~-~~l~~~l~~~~ 90 (206)
T 3f5d_A 20 VYLASALNQREDWSVHTVSLDPIVSSIGGFKTSVDYIIGLE------PANFNLLVMIGGDSWSN--DN-KKLLHFVKTAF 90 (206)
T ss_dssp HHHHHHHHTSTTEEEEEEESSSEEEBTTSCEEECSEETTSS------CSCCSEEEECCBSCCCC--CC-HHHHHHHHHHH
T ss_pred HHHHHHHhccCCeEEEEEECCCCEEecCCcEEecCcChhhC------CcCCCEEEEcCCCChhh--cC-HHHHHHHHHHH
Confidence 35667776633777776654421 12222 13699999988875433 33 345566665
Q ss_pred cCCCCEEEEcHHHHHHHHH
Q 046651 83 CWDVPILGVCLGHQALGFV 101 (392)
Q Consensus 83 ~~~iPILGVCLGhQ~La~a 101 (392)
..++||.+||-|-++|+.+
T Consensus 91 ~~gk~iaaiC~G~~~La~a 109 (206)
T 3f5d_A 91 QKNIPIAAICGAVDFLAKN 109 (206)
T ss_dssp HTTCCEEEETHHHHHHHHT
T ss_pred HcCCEEEEECHHHHHHHHc
Confidence 3599999999999999986
|
| >3ej6_A Catalase-3; heme, hydrogen iron, metal-binding, oxidoreductase, peroxidase; HET: NAG HEM; 2.30A {Neurospora crassa} | Back alignment and structure |
|---|
Probab=94.84 E-value=0.095 Score=56.39 Aligned_cols=91 Identities=19% Similarity=0.272 Sum_probs=60.7
Q ss_pred cEEEEEECCCCch----HHHHHHHHHhCCCCeEEEeCCC-----CCHHHHHhhhcccCCcCEEEECCCCCC-------CC
Q 046651 5 VRTLLIDNYDSYT----YNIYQELSTINGVPPVVVRNDE-----WTWRDICRYLYEENAFDNIVISPGPGS-------PA 68 (392)
Q Consensus 5 ~r~LlIDnyDSyT----~nl~q~L~~v~G~~pvVV~nd~-----~~~eel~~~l~e~~~fDgIVISpGPGs-------p~ 68 (392)
.||+|+-..+.+. ..+.+.|++ .|+.+++|-... .+++++.. ..||+|||.||... |.
T Consensus 538 rKVaILvadG~fE~~El~~p~~aL~~-aGa~V~vVsp~~g~GvD~t~~~~~s-----~~fDAVvlPGG~~~~~~~~~~~d 611 (688)
T 3ej6_A 538 LRVGVLSTTKGGSLDKAKALKEQLEK-DGLKVTVIAEYLASGVDQTYSAADA-----TAFDAVVVAEGAERVFSGKGAMS 611 (688)
T ss_dssp CEEEEECCSSSSHHHHHHHHHHHHHH-TTCEEEEEESSCCTTCCEETTTCCG-----GGCSEEEECTTCCTTTSTTTTCC
T ss_pred CEEEEEccCCCccHHHHHHHHHHHHH-CCCEEEEEeCCCCCCcccCcccCCh-----hcCcEEEECCCcccccccccchh
Confidence 5676663311243 346678887 799999996532 13444433 46999999888543 34
Q ss_pred CCCchhHHHHHHHH--cCCCCEEEEcHHHHHHHHH
Q 046651 69 CPEDIGICLRVLLE--CWDVPILGVCLGHQALGFV 101 (392)
Q Consensus 69 ~~~d~gi~~~ll~~--~~~iPILGVCLGhQ~La~a 101 (392)
....-+-..+++++ ...+||-.||-|-++|..+
T Consensus 612 ~Lr~~~~a~~fV~e~~~hgKpIAAIchgp~lL~~A 646 (688)
T 3ej6_A 612 PLFPAGRPSQILTDGYRWGKPVAAVGSAKKALQSI 646 (688)
T ss_dssp TTSCTTHHHHHHHHHHHTTCCEEEEGGGHHHHHHT
T ss_pred hhccCHHHHHHHHHHHHcCCEEEEeCccHHHHHHc
Confidence 34444456677766 3599999999999999876
|
| >3efe_A THIJ/PFPI family protein; structural GEN csgid, center for structural genomics of infectious disease chaperone; 2.30A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=94.78 E-value=0.09 Score=47.73 Aligned_cols=47 Identities=15% Similarity=0.109 Sum_probs=34.3
Q ss_pred CCcCEEEECCCCCCCCCCCchhHHHHHHHH--cCCCCEEEEcHHHHHHHHH
Q 046651 53 NAFDNIVISPGPGSPACPEDIGICLRVLLE--CWDVPILGVCLGHQALGFV 101 (392)
Q Consensus 53 ~~fDgIVISpGPGsp~~~~d~gi~~~ll~~--~~~iPILGVCLGhQ~La~a 101 (392)
..||.|||.||.+.. . .+-....++|++ ..+++|.+||-|-.+|+.+
T Consensus 73 ~~~D~livpGG~~~~-~-~~~~~l~~~l~~~~~~gk~iaaiC~G~~~La~a 121 (212)
T 3efe_A 73 ESKDLLILPGGTTWS-E-EIHQPILERIGQALKIGTIVAAICGATDALANM 121 (212)
T ss_dssp CTTCEEEECCCSCTT-S-GGGHHHHHHHHHHHHHTCEEEEETHHHHHHHHT
T ss_pred cCCCEEEECCCCccc-c-ccCHHHHHHHHHHHHCCCEEEEEcHHHHHHHHc
Confidence 379999998887632 2 223345566665 2489999999999999976
|
| >2fex_A Conserved hypothetical protein; structural genomics, protein structure initiative, PSI, MIDW center for structural genomics, MCSG; 1.70A {Agrobacterium tumefaciens} SCOP: c.23.16.2 | Back alignment and structure |
|---|
Probab=94.66 E-value=0.12 Score=45.67 Aligned_cols=76 Identities=18% Similarity=0.156 Sum_probs=45.8
Q ss_pred HHHHHHHHhCCCCeEEEeCCCC--------------CHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHH--
Q 046651 19 NIYQELSTINGVPPVVVRNDEW--------------TWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLE-- 82 (392)
Q Consensus 19 nl~q~L~~v~G~~pvVV~nd~~--------------~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~-- 82 (392)
..++.|.+..|.++.++..+.- +++++.. ..||.|||.||++... ..+ .-..++|++
T Consensus 19 ~~~~~l~~a~~~~v~~vs~~~~~v~~~~g~~v~~~~~~~~~~~-----~~~D~livpGG~~~~~-~~~-~~l~~~l~~~~ 91 (188)
T 2fex_A 19 LLAAAARSYLGVEIVHATPDGMPVTSMGGLKVTPDTSYDALDP-----VDIDALVIPGGLSWEK-GTA-ADLGGLVKRFR 91 (188)
T ss_dssp HHHHHHHHHSCCEEEEEETTSSCEECTTCCEEECSEEGGGCCT-----TTCSEEEECCBSHHHH-TCC-CCCHHHHHHHH
T ss_pred HHHHHHhhcCCceEEEEeCCCCceeeCCCcEEeccccHHHCCc-----ccCCEEEECCCCcccc-ccc-HHHHHHHHHHH
Confidence 3556665435777777765431 1222211 3699999988765211 111 112344444
Q ss_pred cCCCCEEEEcHHHHHHHHH
Q 046651 83 CWDVPILGVCLGHQALGFV 101 (392)
Q Consensus 83 ~~~iPILGVCLGhQ~La~a 101 (392)
..++||.+||-|-++|+.+
T Consensus 92 ~~~k~i~aiC~G~~~La~a 110 (188)
T 2fex_A 92 DRDRLVAGICAAASALGGT 110 (188)
T ss_dssp HTTCEEEEETHHHHHHHHT
T ss_pred HCCCEEEEECHHHHHHHHC
Confidence 2489999999999999976
|
| >3uk7_A Class I glutamine amidotransferase-like domain-CO protein; rossmann fold, cytosol; 2.05A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=94.26 E-value=0.049 Score=53.92 Aligned_cols=48 Identities=25% Similarity=0.438 Sum_probs=34.0
Q ss_pred CCcCEEEECCCCCCCCCCCchhHHHHHHHH--cCCCCEEEEcHHHHHHHHH
Q 046651 53 NAFDNIVISPGPGSPACPEDIGICLRVLLE--CWDVPILGVCLGHQALGFV 101 (392)
Q Consensus 53 ~~fDgIVISpGPGsp~~~~d~gi~~~ll~~--~~~iPILGVCLGhQ~La~a 101 (392)
..||.|||.||+| +....+-....++|++ ..++||.+||-|-++|+.+
T Consensus 281 ~~~D~livpGg~~-~~~~~~~~~~~~~l~~~~~~~~~i~aiC~g~~~La~a 330 (396)
T 3uk7_A 281 SSYDALVIPGGRA-PEYLALNEHVLNIVKEFMNSEKPVASICHGQQILAAA 330 (396)
T ss_dssp GGCSEEEECCBSH-HHHHTTCHHHHHHHHHHHHTTCCEEEEGGGHHHHHHT
T ss_pred ccCCEEEECCCcc-hhhhccCHHHHHHHHHHHHCCCEEEEEchHHHHHHHc
Confidence 4699999977765 2211122334566665 3599999999999999986
|
| >3uk7_A Class I glutamine amidotransferase-like domain-CO protein; rossmann fold, cytosol; 2.05A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=93.89 E-value=0.066 Score=52.98 Aligned_cols=89 Identities=20% Similarity=0.278 Sum_probs=55.7
Q ss_pred cEEEEEECCCCch----HHHHHHHHHhCCCCeEEEeCCCC------------------------------CHHHHHhhhc
Q 046651 5 VRTLLIDNYDSYT----YNIYQELSTINGVPPVVVRNDEW------------------------------TWRDICRYLY 50 (392)
Q Consensus 5 ~r~LlIDnyDSyT----~nl~q~L~~v~G~~pvVV~nd~~------------------------------~~eel~~~l~ 50 (392)
+|++|+= +|.|. ...++.|++ .|.++.++..+.. +++++..
T Consensus 13 ~kv~ill-~dg~e~~E~~~~~~~l~~-ag~~v~~vs~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~--- 87 (396)
T 3uk7_A 13 RTVLILC-GDYMEDYEVMVPFQALQA-FGITVHTVCPGKKAGDSCPTAVHDFCGHQTYFESRGHNFTLNATFDEVDL--- 87 (396)
T ss_dssp CEEEEEC-CTTEEHHHHHHHHHHHHH-TTCEEEEECTTCCTTCEECEEEEECSSSSSCEEEECCCEECCSCGGGCCG---
T ss_pred CeEEEEe-CCCccHHHHHHHHHHHHH-CCCEEEEEcCCCcCCCcccccccccccchhhhhccCceeeccCChhhcCc---
Confidence 3566554 34543 235677776 7888888755421 1223211
Q ss_pred ccCCcCEEEECCCCCCCCCCCchhHHHHHHHH--cCCCCEEEEcHHHHHHHHH
Q 046651 51 EENAFDNIVISPGPGSPACPEDIGICLRVLLE--CWDVPILGVCLGHQALGFV 101 (392)
Q Consensus 51 e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~--~~~iPILGVCLGhQ~La~a 101 (392)
..||.|||.||.| +....+-....++|++ ..++||.+||-|-++|+.+
T Consensus 88 --~~~D~livpGG~~-~~~~~~~~~~~~~l~~~~~~~~~i~aiC~G~~~La~a 137 (396)
T 3uk7_A 88 --SKYDGLVIPGGRA-PEYLALTASVVELVKEFSRSGKPIASICHGQLILAAA 137 (396)
T ss_dssp --GGCSEEEECCBSH-HHHHTTCHHHHHHHHHHHHTTCCEEEETTTHHHHHHT
T ss_pred --ccCCEEEECCCcc-hhhcccCHHHHHHHHHHHHcCCEEEEECchHHHHHhc
Confidence 4699999987765 2211222334566665 3599999999999999987
|
| >3ot1_A 4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis enzyme; csgid, structural genomics; HET: MSE CSX; 1.16A {Vibrio cholerae o1 biovar el tor} SCOP: c.23.16.0 | Back alignment and structure |
|---|
Probab=93.85 E-value=0.024 Score=51.33 Aligned_cols=89 Identities=16% Similarity=0.164 Sum_probs=53.9
Q ss_pred EEEEEECCCCch----HHHHHHHHHhCCCCeEEEeCCC-C--------------CHHHHHhhhcccCCcCEEEECCCCCC
Q 046651 6 RTLLIDNYDSYT----YNIYQELSTINGVPPVVVRNDE-W--------------TWRDICRYLYEENAFDNIVISPGPGS 66 (392)
Q Consensus 6 r~LlIDnyDSyT----~nl~q~L~~v~G~~pvVV~nd~-~--------------~~eel~~~l~e~~~fDgIVISpGPGs 66 (392)
||+|+=. |.|. ...++.|.. .|.++.++..+. . +++++.. ..||.|||.||.+.
T Consensus 11 ~v~ill~-~g~~~~e~~~~~~~l~~-ag~~v~~vs~~g~~~v~~~~G~~v~~d~~l~~~~~-----~~~D~livpGG~~~ 83 (208)
T 3ot1_A 11 RILVPVA-HGSEEMETVIIVDTLVR-AGFQVTMAAVGDKLQVQGSRGVWLTAEQTLEACSA-----EAFDALALPGGVGG 83 (208)
T ss_dssp EEEEEEC-TTCCHHHHHHHHHHHHH-TTCEEEEEESSSCSEEECTTSCEEECSEEGGGCCG-----GGCSEEEECCCHHH
T ss_pred eEEEEEC-CCCcHHHHHHHHHHHHH-CCCEEEEEEcCCCcceecCCCcEEeCCCCHHHCCC-----cCCCEEEECCCchH
Confidence 5666643 4442 235567766 688888876652 1 1233211 36999999777543
Q ss_pred CCCCCchhHHHHHHHH--cCCCCEEEEcHHH-HHHHHH
Q 046651 67 PACPEDIGICLRVLLE--CWDVPILGVCLGH-QALGFV 101 (392)
Q Consensus 67 p~~~~d~gi~~~ll~~--~~~iPILGVCLGh-Q~La~a 101 (392)
+....+-....++|++ ..+++|.+||-|- .+|+.+
T Consensus 84 ~~~l~~~~~l~~~l~~~~~~gk~i~aiC~G~a~~La~a 121 (208)
T 3ot1_A 84 AQAFADSTALLALIDAFSQQGKLVAAICATPALVFAKQ 121 (208)
T ss_dssp HHHHHTCHHHHHHHHHHHHTTCEEEEETTHHHHTTTTT
T ss_pred HHHHhhCHHHHHHHHHHHHcCCEEEEEChhHHHHHHHC
Confidence 3221122234566665 3599999999998 788763
|
| >2iuf_A Catalase; oxidoreductase; HET: HDD NAG; 1.71A {Penicillium janthinellum} PDB: 2xf2_A* | Back alignment and structure |
|---|
Probab=93.53 E-value=0.059 Score=58.01 Aligned_cols=91 Identities=22% Similarity=0.250 Sum_probs=60.6
Q ss_pred cEEEEEEC-CCCch----HHHHHHHHHhCCCCeEEEeCCCC-----CHHHHHhhhcccCCcCEEEECCCCCC--------
Q 046651 5 VRTLLIDN-YDSYT----YNIYQELSTINGVPPVVVRNDEW-----TWRDICRYLYEENAFDNIVISPGPGS-------- 66 (392)
Q Consensus 5 ~r~LlIDn-yDSyT----~nl~q~L~~v~G~~pvVV~nd~~-----~~eel~~~l~e~~~fDgIVISpGPGs-------- 66 (392)
+||+|+-. .|.+. ..+.+.|++ .|+.++||....- +++++.. ..||+|||.||..+
T Consensus 530 ~kVaIL~a~~dGfe~~E~~~~~~~L~~-aG~~V~vVs~~~g~~vD~t~~~~~s-----~~fDAVvlPGG~~g~~~~~~~~ 603 (688)
T 2iuf_A 530 LKVGLLASVNKPASIAQGAKLQVALSS-VGVDVVVVAERXANNVDETYSASDA-----VQFDAVVVADGAEGLFGADSFT 603 (688)
T ss_dssp CEEEEECCTTCHHHHHHHHHHHHHHGG-GTCEEEEEESSCCTTCCEESTTCCG-----GGCSEEEECTTCGGGCCTTTTT
T ss_pred CEEEEEecCCCCCcHHHHHHHHHHHHH-CCCEEEEEeccCCcccccchhcCCc-----cccCeEEecCCCcccccccccc
Confidence 57777754 14443 246677777 7999999965432 1223222 46999999988543
Q ss_pred --------CCCCCchhHHHHHHHH--cCCCCEEEEcHHHHHHHHH
Q 046651 67 --------PACPEDIGICLRVLLE--CWDVPILGVCLGHQALGFV 101 (392)
Q Consensus 67 --------p~~~~d~gi~~~ll~~--~~~iPILGVCLGhQ~La~a 101 (392)
+.....-+-..+++++ ..++||-.||-|-++|..+
T Consensus 604 ~~~~~~~~~~~L~~~~~~~~~v~~~~~~gKpIaAIc~ap~vL~~a 648 (688)
T 2iuf_A 604 VEPSAGSGASTLYPAGRPLNILLDAFRFGKTVGALGSGSDALESG 648 (688)
T ss_dssp CCCCTTSCCCSSSCTTHHHHHHHHHHHHTCEEEEEGGGHHHHHHT
T ss_pred cccccccchhhcccChHHHHHHHHHHHcCCEEEEECchHHHHHHc
Confidence 4444444556777776 2499999999999998865
|
| >1rw7_A YDR533CP; alpha-beta sandwich, DJ-1/THIJ/PFPI superfamily, unknown function; 1.80A {Saccharomyces cerevisiae} SCOP: c.23.16.2 PDB: 1qvv_A* 1qvz_A 1qvw_A | Back alignment and structure |
|---|
Probab=93.33 E-value=0.02 Score=53.20 Aligned_cols=49 Identities=14% Similarity=0.107 Sum_probs=34.0
Q ss_pred CCcCEEEECCCCCCCCCCCchhHHHHHHHH--cCCCCEEEEcHHHHHHHHH
Q 046651 53 NAFDNIVISPGPGSPACPEDIGICLRVLLE--CWDVPILGVCLGHQALGFV 101 (392)
Q Consensus 53 ~~fDgIVISpGPGsp~~~~d~gi~~~ll~~--~~~iPILGVCLGhQ~La~a 101 (392)
..||.|||.||.|.......-....++|++ ..++||.+||-|-.+|+.+
T Consensus 97 ~~~D~livpGG~~~~~~l~~~~~l~~~l~~~~~~gk~vaaIC~G~~~La~a 147 (243)
T 1rw7_A 97 DDYQIFFASAGHGTLFDYPKAKDLQDIASEIYANGGVVAAVCHGPAIFDGL 147 (243)
T ss_dssp GGEEEEEECCSTTHHHHGGGCHHHHHHHHHHHHTTCEEEEETTGGGGGTTC
T ss_pred hhCcEEEECCCCCchhhcccCHHHHHHHHHHHHcCCEEEEECCCHHHHHhc
Confidence 469999998887643222222334566655 3599999999999888875
|
| >3ttv_A Catalase HPII; heme orientation, oxidoreductase; HET: HEM; 1.45A {Escherichia coli} PDB: 3ttt_A* 1gge_A* 1iph_A* 4ens_A* 3ttu_A* 3p9p_A* 4enq_A* 1p81_A* 3ttx_A* 4enw_A* 3ttw_A* 4ent_A* 1qws_A* 1cf9_A* 1p80_A* 1qf7_A* 4enu_A* 4enp_A* 1gg9_A* 1ggf_A* ... | Back alignment and structure |
|---|
Probab=93.13 E-value=0.043 Score=59.49 Aligned_cols=88 Identities=18% Similarity=0.117 Sum_probs=57.0
Q ss_pred cEEEEEECCCCch----HHHHHHHHHhCCCCeEEEeCCCC--------------CHHHHHhhhcccCCcCEEEECCCCCC
Q 046651 5 VRTLLIDNYDSYT----YNIYQELSTINGVPPVVVRNDEW--------------TWRDICRYLYEENAFDNIVISPGPGS 66 (392)
Q Consensus 5 ~r~LlIDnyDSyT----~nl~q~L~~v~G~~pvVV~nd~~--------------~~eel~~~l~e~~~fDgIVISpGPGs 66 (392)
.||+|+=. |.|. ..+++.|++ .|+.+++|..+.- +++++.. ..||+|||.|| .
T Consensus 601 rKVaILla-DGfEe~El~~pvdaLr~-AG~~V~vVS~~~g~V~gs~G~~V~aD~t~~~v~s-----~~fDALVVPGG--g 671 (753)
T 3ttv_A 601 RVVAILLN-DEVRSADLLAILKALKA-KGVHAKLLYSRMGEVTADDGTVLPIAATFAGAPS-----LTVDAVIVPCG--N 671 (753)
T ss_dssp CEEEEECC-TTCCHHHHHHHHHHHHH-HTCEEEEEESSSSEEECTTSCEEECCEETTTSCG-----GGCSEEEECCS--C
T ss_pred CEEEEEec-CCCCHHHHHHHHHHHHH-CCCEEEEEEcCCCeEEeCCCCEEecccchhhCCC-----cCCCEEEECCC--C
Confidence 46666632 3442 346777877 6999888865432 1223222 34999999777 3
Q ss_pred CCCCCchhHHHHHHHH--cCCCCEEEEcHHHHHHHHH
Q 046651 67 PACPEDIGICLRVLLE--CWDVPILGVCLGHQALGFV 101 (392)
Q Consensus 67 p~~~~d~gi~~~ll~~--~~~iPILGVCLGhQ~La~a 101 (392)
+.....-.-..++|++ ..++||-+||-|-++|+.+
T Consensus 672 ~~~Lr~d~~vl~~Vre~~~~gKpIAAIC~Gp~lLa~A 708 (753)
T 3ttv_A 672 IADIADNGDANYYLMEAYKHLKPIALAGDARKFKATI 708 (753)
T ss_dssp GGGTTTCHHHHHHHHHHHHTTCCEEEEGGGGGGGGGG
T ss_pred hHHhhhCHHHHHHHHHHHhcCCeEEEECchHHHHHHc
Confidence 3333333445677776 3599999999999999876
|
| >1sy7_A Catalase 1; heme oxidation, singlet oxygen, oxidoreductase; HET: HDD HEM; 1.75A {Neurospora crassa} SCOP: c.23.16.3 | Back alignment and structure |
|---|
Probab=92.29 E-value=0.094 Score=56.73 Aligned_cols=92 Identities=18% Similarity=0.158 Sum_probs=56.9
Q ss_pred cEEEEEECCCCch----HHHHHHHHHhCCCCeEEEeCCCC--------------CHHHHHhhhcccCCcCEEEECCCCCC
Q 046651 5 VRTLLIDNYDSYT----YNIYQELSTINGVPPVVVRNDEW--------------TWRDICRYLYEENAFDNIVISPGPGS 66 (392)
Q Consensus 5 ~r~LlIDnyDSyT----~nl~q~L~~v~G~~pvVV~nd~~--------------~~eel~~~l~e~~~fDgIVISpGPGs 66 (392)
+||+||-. |.+. ...++.|.. .|++++++..+.- +++++. ...||.|||.||.+.
T Consensus 535 rkVaILl~-dGfe~~El~~p~dvL~~-AG~~V~ivS~~gg~V~ss~G~~v~~d~~l~~v~-----~~~yDaViVPGG~~~ 607 (715)
T 1sy7_A 535 RRVAIIIA-DGYDNVAYDAAYAAISA-NQAIPLVIGPRRSKVTAANGSTVQPHHHLEGFR-----STMVDAIFIPGGAKA 607 (715)
T ss_dssp CEEEEECC-TTBCHHHHHHHHHHHHH-TTCEEEEEESCSSCEEBTTSCEECCSEETTTCC-----GGGSSEEEECCCHHH
T ss_pred CEEEEEEc-CCCCHHHHHHHHHHHHh-cCCEEEEEECCCCceecCCCceEecccccccCC-----cccCCEEEEcCCccc
Confidence 57777744 4442 235667766 6898888865431 112211 135999999777433
Q ss_pred CCCCCchhHHHHHHHH--cCCCCEEEEcHHHHHHHHHhC
Q 046651 67 PACPEDIGICLRVLLE--CWDVPILGVCLGHQALGFVHG 103 (392)
Q Consensus 67 p~~~~d~gi~~~ll~~--~~~iPILGVCLGhQ~La~a~G 103 (392)
+.....-.-..++|++ ..++||.+||-|-.+|+.+.|
T Consensus 608 ~~~l~~~~~l~~~Lr~~~~~gK~IaAIC~G~~lLA~AlG 646 (715)
T 1sy7_A 608 AETLSKNGRALHWIREAFGHLKAIGATGEAVDLVAKAIA 646 (715)
T ss_dssp HHHHHTCHHHHHHHHHHHHTTCEEEEETTHHHHHHHHHC
T ss_pred HhhhccCHHHHHHHHHHHhCCCEEEEECHHHHHHHHccC
Confidence 3221122334566665 358999999999999998854
|
| >3gra_A Transcriptional regulator, ARAC family; transcription regulator, PSI-II, structural genomics structure initiative; 2.30A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=91.82 E-value=0.15 Score=45.88 Aligned_cols=46 Identities=22% Similarity=0.225 Sum_probs=35.1
Q ss_pred CCcCEEEECCCCCCCCCCCchhHHHHHHHH--cCCCCEEEEcHHHHHHHHH
Q 046651 53 NAFDNIVISPGPGSPACPEDIGICLRVLLE--CWDVPILGVCLGHQALGFV 101 (392)
Q Consensus 53 ~~fDgIVISpGPGsp~~~~d~gi~~~ll~~--~~~iPILGVCLGhQ~La~a 101 (392)
..||.|||.||.+..... ....++|++ ..+++|.+||-|-.+|+.+
T Consensus 70 ~~~D~livpGG~~~~~~~---~~l~~~l~~~~~~g~~iaaIC~G~~~La~a 117 (202)
T 3gra_A 70 KELDLLVVCGGLRTPLKY---PELDRLLNDCAAHGMALGGLWNGAWFLGRA 117 (202)
T ss_dssp TTCSEEEEECCTTCCSCC---TTHHHHHHHHHHHTCEEEEETTHHHHHHHH
T ss_pred CCCCEEEEeCCCchhhcc---HHHHHHHHHHHhhCCEEEEECHHHHHHHHc
Confidence 679999998887654432 335566665 2489999999999999987
|
| >3fse_A Two-domain protein containing DJ-1/THIJ/PFPI-like ferritin-like domains; structural genomics; HET: MSE CSX; 1.90A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=91.59 E-value=0.17 Score=50.48 Aligned_cols=88 Identities=18% Similarity=0.119 Sum_probs=53.9
Q ss_pred EEEEEECCCCchH----HHHHHHHHhCCCCeEEEeCCCCC----------------HHHHHhhhcccCCcCEEEECCCCC
Q 046651 6 RTLLIDNYDSYTY----NIYQELSTINGVPPVVVRNDEWT----------------WRDICRYLYEENAFDNIVISPGPG 65 (392)
Q Consensus 6 r~LlIDnyDSyT~----nl~q~L~~v~G~~pvVV~nd~~~----------------~eel~~~l~e~~~fDgIVISpGPG 65 (392)
||+|+- +|.|.. ..++.|.. .|.++.++..+.-. ++++. ...||.|||.||+|
T Consensus 12 kV~ILl-~dgf~~~El~~p~dvL~~-Ag~~v~vvS~~~g~~V~ss~G~~~i~~d~~l~~v~-----~~~~DaLiVPGG~g 84 (365)
T 3fse_A 12 KVAILI-EQAVEDTEFIIPCNGLKQ-AGFEVVVLGSRMNEKYKGKRGRLSTQADGTTTEAI-----ASEFDAVVIPGGMA 84 (365)
T ss_dssp EEEEEC-CTTBCHHHHHHHHHHHHH-TTCEEEEEESSSSCCEECTTSCCEECCSEETTTCC-----GGGCSEEEECCBTH
T ss_pred EEEEEE-CCCCcHHHHHHHHHHHHH-CCCEEEEEECCCCceeecCCCceEEeCCCCHhhCC-----CcCCCEEEEECCcc
Confidence 555553 455532 35677766 68888777554321 11211 12599999988774
Q ss_pred CCCCCCchhHHHHHHHH--cCCCCEEEEcHHHHHHHHH
Q 046651 66 SPACPEDIGICLRVLLE--CWDVPILGVCLGHQALGFV 101 (392)
Q Consensus 66 sp~~~~d~gi~~~ll~~--~~~iPILGVCLGhQ~La~a 101 (392)
. ....+-.-..++|++ ..++||.+||-|-.+|+.+
T Consensus 85 ~-~~l~~~~~l~~~Lr~~~~~gk~IaAIC~G~~lLA~A 121 (365)
T 3fse_A 85 P-DKMRRNPNTVRFVQEAMEQGKLVAAVCHGPQVLIEG 121 (365)
T ss_dssp H-HHHTTCHHHHHHHHHHHHTTCEEEEETTTHHHHHHT
T ss_pred h-hhccCCHHHHHHHHHHHHCCCEEEEECHHHHHHHHc
Confidence 3 211122234566665 3599999999999999986
|
| >1z0s_A Probable inorganic polyphosphate/ATP-NAD kinase; ATP-binding, structural genomics, NADP, PSI, protein structure initiative; HET: ATP; 1.70A {Archaeoglobus fulgidus} SCOP: e.52.1.1 PDB: 1z0u_A* 1z0z_A* 1suw_A* | Back alignment and structure |
|---|
Probab=91.58 E-value=0.16 Score=48.97 Aligned_cols=73 Identities=25% Similarity=0.336 Sum_probs=49.8
Q ss_pred CccEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHH
Q 046651 3 EFVRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLE 82 (392)
Q Consensus 3 ~~~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~ 82 (392)
+.||++||-+.+.-...+.+.|.. .|+++.+..... +.+ ..+|.||.-||-|+ .++..+.
T Consensus 28 ~~mki~iv~~~~~~~~~l~~~L~~-~g~~v~~~~~~~---~~~-------~~~DlvIvlGGDGT---------~L~aa~~ 87 (278)
T 1z0s_A 28 GGMRAAVVYKTDGHVKRIEEALKR-LEVEVELFNQPS---EEL-------ENFDFIVSVGGDGT---------ILRILQK 87 (278)
T ss_dssp --CEEEEEESSSTTHHHHHHHHHH-TTCEEEEESSCC---GGG-------GGSSEEEEEECHHH---------HHHHHTT
T ss_pred cceEEEEEeCCcHHHHHHHHHHHH-CCCEEEEccccc---ccc-------CCCCEEEEECCCHH---------HHHHHHH
Confidence 469999998876556678888877 698876543322 222 35899998899875 3455555
Q ss_pred cCC-CCEEEEcHHH
Q 046651 83 CWD-VPILGVCLGH 95 (392)
Q Consensus 83 ~~~-iPILGVCLGh 95 (392)
..+ +||+||=.|+
T Consensus 88 ~~~~~PilGIN~G~ 101 (278)
T 1z0s_A 88 LKRCPPIFGINTGR 101 (278)
T ss_dssp CSSCCCEEEEECSS
T ss_pred hCCCCcEEEECCCC
Confidence 334 9999999874
|
| >3n7t_A Macrophage binding protein; seattle structural genomics center for infectious disease, S macrophage, pathogenic fungus, coccidioidomycosis; 2.10A {Coccidioides immitis} SCOP: c.23.16.0 | Back alignment and structure |
|---|
Probab=90.91 E-value=0.028 Score=52.98 Aligned_cols=49 Identities=14% Similarity=0.095 Sum_probs=34.4
Q ss_pred CCcCEEEECCCCCCCCCCCchhHHHHHHHH--cCCCCEEEEcHHHHHHHHH
Q 046651 53 NAFDNIVISPGPGSPACPEDIGICLRVLLE--CWDVPILGVCLGHQALGFV 101 (392)
Q Consensus 53 ~~fDgIVISpGPGsp~~~~d~gi~~~ll~~--~~~iPILGVCLGhQ~La~a 101 (392)
..||.|||.||.|.......-....++|++ ..++||.+||-|-.+|+.+
T Consensus 104 ~~yD~l~ipGG~g~~~~l~~~~~l~~~l~~~~~~gk~iaaIC~Gp~~La~a 154 (247)
T 3n7t_A 104 HDYGLMFVCGGHGALYDFPHAKHLQNIAQDIYKRGGVIGAVCHGPAMLPGI 154 (247)
T ss_dssp GGCSEEEECCSTTHHHHGGGCHHHHHHHHHHHHTTCEEEEETTGGGGGGGC
T ss_pred hhCCEEEEeCCCchhhhcccCHHHHHHHHHHHHcCCEEEEEChHHHHHHHh
Confidence 469999998887653222222334566665 3599999999999888765
|
| >1n57_A Chaperone HSP31, protein YEDU; alpha-beta sandwich; 1.60A {Escherichia coli} SCOP: c.23.16.2 PDB: 1pv2_A 1izy_A 1ons_A 1izz_A | Back alignment and structure |
|---|
Probab=90.11 E-value=0.096 Score=50.26 Aligned_cols=50 Identities=16% Similarity=0.167 Sum_probs=35.6
Q ss_pred CCcCEEEECCCCCCCCCCCchhHHHHHHHH--cCCCCEEEEcHHHHHHHHHh
Q 046651 53 NAFDNIVISPGPGSPACPEDIGICLRVLLE--CWDVPILGVCLGHQALGFVH 102 (392)
Q Consensus 53 ~~fDgIVISpGPGsp~~~~d~gi~~~ll~~--~~~iPILGVCLGhQ~La~a~ 102 (392)
..||.|||.||+|......+-....++|++ ..+++|.+||-|-.+|+.+.
T Consensus 144 ~~yD~livPGG~g~~~~l~~~~~l~~~l~~~~~~gk~VaaIC~Gp~~La~a~ 195 (291)
T 1n57_A 144 SEYAAIFVPGGHGALIGLPESQDVAAALQWAIKNDRFVISLCHGPAAFLALR 195 (291)
T ss_dssp CSEEEEEECCSGGGGSSGGGCHHHHHHHHHHHHTTCEEEEETTGGGGGGGGT
T ss_pred ccCCEEEecCCcchhhhhhhCHHHHHHHHHHHHcCCEEEEECccHHHHHhhc
Confidence 679999998887755332222335566665 35899999999988877763
|
| >3kkl_A Probable chaperone protein HSP33; peptidase, heat shock protein, hydrolase, protease, stress response; 2.03A {Saccharomyces cerevisiae} PDB: 3mii_A* | Back alignment and structure |
|---|
Probab=89.91 E-value=0.035 Score=52.11 Aligned_cols=49 Identities=12% Similarity=0.079 Sum_probs=34.1
Q ss_pred CCcCEEEECCCCCCCCCCCchhHHHHHHHH--cCCCCEEEEcHHHHHHHHH
Q 046651 53 NAFDNIVISPGPGSPACPEDIGICLRVLLE--CWDVPILGVCLGHQALGFV 101 (392)
Q Consensus 53 ~~fDgIVISpGPGsp~~~~d~gi~~~ll~~--~~~iPILGVCLGhQ~La~a 101 (392)
..||.|||.||.|......+-....++|++ ..++||.+||-|-.+|+.+
T Consensus 97 ~~yD~l~vpGG~~~~~~l~~~~~l~~~l~~~~~~gk~iaaIC~G~~~La~a 147 (244)
T 3kkl_A 97 SDYKVFFASAGHGALFDYPKAKNLQDIASKIYANGGVIAAICHGPLLFDGL 147 (244)
T ss_dssp GGCSEEEECCSTTHHHHGGGCHHHHHHHHHHHHTTCEEEEETTGGGGGTTC
T ss_pred hhCCEEEEcCCCchhhhcccCHHHHHHHHHHHHcCCEEEEECHHHHHHHHh
Confidence 469999998887653222222334566665 3599999999999888765
|
| >3er6_A Putative transcriptional regulator protein; structural genomics, unknown function, DNA-binding, transcription regulation, PSI-2; 1.90A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=89.72 E-value=0.28 Score=44.38 Aligned_cols=49 Identities=8% Similarity=-0.054 Sum_probs=33.4
Q ss_pred CCcCEEEECCCCCCCCC-CCchhHHHHHHHH--cCCCCEEEEcHHHHHHHHH
Q 046651 53 NAFDNIVISPGPGSPAC-PEDIGICLRVLLE--CWDVPILGVCLGHQALGFV 101 (392)
Q Consensus 53 ~~fDgIVISpGPGsp~~-~~d~gi~~~ll~~--~~~iPILGVCLGhQ~La~a 101 (392)
..||.|||.||.+.... ..+-....++|++ ..+++|.+||-|-.+|+.+
T Consensus 73 ~~~D~livpGg~~~~~~~~~~~~~l~~~l~~~~~~g~~iaaIC~G~~~La~a 124 (209)
T 3er6_A 73 DFTNILIIGSIGDPLESLDKIDPALFDWIRELHLKGSKIVAIDTGIFVVAKA 124 (209)
T ss_dssp SCCSEEEECCCSCHHHHGGGSCHHHHHHHHHHHHTTCEEEEETTHHHHHHHH
T ss_pred CCCCEEEECCCCCchhhhccCCHHHHHHHHHHHhcCCEEEEEcHHHHHHHHc
Confidence 46999999666542211 1122334566665 3589999999999999987
|
| >3noq_A THIJ/PFPI family protein; DJ-1 superfamily, isocyanide hydratase, isonitrIle hydratase; HET: NHE; 1.00A {Pseudomonas fluorescens} PDB: 3noo_A 3non_A 3nor_A* 3nov_A | Back alignment and structure |
|---|
Probab=88.19 E-value=0.31 Score=44.92 Aligned_cols=95 Identities=17% Similarity=0.169 Sum_probs=54.7
Q ss_pred cEEEEEECCCCchH----HHHHHHHHhCCCCeEEEeCCCCCH---HH--H--HhhhcccCCcCEEEECCCCCCCCCCCch
Q 046651 5 VRTLLIDNYDSYTY----NIYQELSTINGVPPVVVRNDEWTW---RD--I--CRYLYEENAFDNIVISPGPGSPACPEDI 73 (392)
Q Consensus 5 ~r~LlIDnyDSyT~----nl~q~L~~v~G~~pvVV~nd~~~~---ee--l--~~~l~e~~~fDgIVISpGPGsp~~~~d~ 73 (392)
+||+|+ -+|.|.. ..++.|....|.++.++..+.-.. .. + ...+-+...||.|||.||+|......+
T Consensus 6 ~~V~il-l~~gf~~~e~~~p~evl~~~~~~~v~~vs~~~~~V~~~~G~~v~~d~~l~~~~~~D~livpGG~g~~~~~~~- 83 (231)
T 3noq_A 6 VQIGFL-LFPEVQQLDLTGPHDVLASLPDVQVHLIWKEPGPVVASSGLVLQATTSFADCPPLDVICIPGGTGVGALMED- 83 (231)
T ss_dssp EEEEEE-CCTTCCHHHHHHHHHHHTTSTTEEEEEEESSSEEEECTTSCEEEECEETTTCCCCSEEEECCSTTHHHHTTC-
T ss_pred EEEEEE-EeCCCcHHHHHHHHHHHHcCCCCEEEEEECCCCcEEcCCCCEEecccChhHCCcCCEEEECCCCChhhhccC-
Confidence 356555 3455532 355666654677776665432100 00 0 000112246999999888764221222
Q ss_pred hHHHHHHHH--cCCCCEEEEcHHHHHHHHH
Q 046651 74 GICLRVLLE--CWDVPILGVCLGHQALGFV 101 (392)
Q Consensus 74 gi~~~ll~~--~~~iPILGVCLGhQ~La~a 101 (392)
....++|++ ..+.+|.+||-|-.+|+.+
T Consensus 84 ~~l~~~lr~~~~~g~~v~aiC~G~~~La~a 113 (231)
T 3noq_A 84 PQALAFIRQQAARARYVTSVSTGSLVLGAA 113 (231)
T ss_dssp HHHHHHHHHHHTTCSEEEEETTHHHHHHHT
T ss_pred HHHHHHHHHHHhcCCEEEEECHHHHHHHHc
Confidence 234566665 3599999999999999976
|
| >3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=87.89 E-value=1.1 Score=35.28 Aligned_cols=82 Identities=12% Similarity=0.088 Sum_probs=48.4
Q ss_pred CccEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHH
Q 046651 3 EFVRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLE 82 (392)
Q Consensus 3 ~~~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~ 82 (392)
..+|+||||........+.+.|.. .|..+++.. +.++....+ +...+|.||+.-.- |. ...+.++.++-..
T Consensus 6 ~~~~ilivdd~~~~~~~l~~~L~~-~g~~v~~~~----~~~~a~~~l-~~~~~dlvi~d~~l--~~-~~g~~~~~~l~~~ 76 (130)
T 3eod_A 6 VGKQILIVEDEQVFRSLLDSWFSS-LGATTVLAA----DGVDALELL-GGFTPDLMICDIAM--PR-MNGLKLLEHIRNR 76 (130)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHH-TTCEEEEES----CHHHHHHHH-TTCCCSEEEECCC--------CHHHHHHHHHT
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHh-CCceEEEeC----CHHHHHHHH-hcCCCCEEEEecCC--CC-CCHHHHHHHHHhc
Confidence 457999999755555567777776 687765432 245555544 44679999995321 11 1234444444333
Q ss_pred cCCCCEEEEcH
Q 046651 83 CWDVPILGVCL 93 (392)
Q Consensus 83 ~~~iPILGVCL 93 (392)
...+||+-+.-
T Consensus 77 ~~~~~ii~~t~ 87 (130)
T 3eod_A 77 GDQTPVLVISA 87 (130)
T ss_dssp TCCCCEEEEEC
T ss_pred CCCCCEEEEEc
Confidence 45889987763
|
| >3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=87.33 E-value=1.2 Score=35.19 Aligned_cols=81 Identities=14% Similarity=0.079 Sum_probs=46.4
Q ss_pred ccEEEEEECCCCchHHHHHHHHHhCCCCeE-EEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHH
Q 046651 4 FVRTLLIDNYDSYTYNIYQELSTINGVPPV-VVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLE 82 (392)
Q Consensus 4 ~~r~LlIDnyDSyT~nl~q~L~~v~G~~pv-VV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~ 82 (392)
.||+||||....+...+-+.|.. .|..++ ...+.+..++.+.. ..+|.||+--.- |. ...+.++.++-..
T Consensus 1 ~~~ilivdd~~~~~~~l~~~L~~-~g~~v~~~~~~~~~a~~~~~~-----~~~dlii~d~~l--~~-~~g~~~~~~l~~~ 71 (134)
T 3f6c_A 1 SLNAIIIDDHPLAIAAIRNLLIK-NDIEILAELTEGGSAVQRVET-----LKPDIVIIDVDI--PG-VNGIQVLETLRKR 71 (134)
T ss_dssp CEEEEEECCCHHHHHHHHHHHHH-TTEEEEEEESSSTTHHHHHHH-----HCCSEEEEETTC--SS-SCHHHHHHHHHHT
T ss_pred CeEEEEEcCCHHHHHHHHHHHhh-CCcEEEEEcCCHHHHHHHHHh-----cCCCEEEEecCC--CC-CChHHHHHHHHhc
Confidence 37999999755555667777776 676655 33333322333333 579999994221 11 1223444444333
Q ss_pred cCCCCEEEEcH
Q 046651 83 CWDVPILGVCL 93 (392)
Q Consensus 83 ~~~iPILGVCL 93 (392)
..++||+-+.-
T Consensus 72 ~~~~~ii~~s~ 82 (134)
T 3f6c_A 72 QYSGIIIIVSA 82 (134)
T ss_dssp TCCSEEEEEEC
T ss_pred CCCCeEEEEeC
Confidence 55889887764
|
| >2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis} | Back alignment and structure |
|---|
Probab=86.81 E-value=1 Score=36.87 Aligned_cols=83 Identities=10% Similarity=0.017 Sum_probs=49.6
Q ss_pred CccEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHH
Q 046651 3 EFVRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLE 82 (392)
Q Consensus 3 ~~~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~ 82 (392)
..++|||||........+.+.|.. .|..++.+. +.++....+ +...+|.||+--. -|. ...+.++..+-..
T Consensus 6 ~~~~iLivdd~~~~~~~l~~~L~~-~g~~v~~~~----~~~~a~~~l-~~~~~dlvi~d~~--l~~-~~g~~~~~~l~~~ 76 (154)
T 2rjn_A 6 KNYTVMLVDDEQPILNSLKRLIKR-LGCNIITFT----SPLDALEAL-KGTSVQLVISDMR--MPE-MGGEVFLEQVAKS 76 (154)
T ss_dssp SCCEEEEECSCHHHHHHHHHHHHT-TTCEEEEES----CHHHHHHHH-TTSCCSEEEEESS--CSS-SCHHHHHHHHHHH
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHH-cCCeEEEeC----CHHHHHHHH-hcCCCCEEEEecC--CCC-CCHHHHHHHHHHh
Confidence 458999999865555667777776 687655432 245555544 3356999998422 111 1223444444444
Q ss_pred cCCCCEEEEcHH
Q 046651 83 CWDVPILGVCLG 94 (392)
Q Consensus 83 ~~~iPILGVCLG 94 (392)
...+||+-+.-.
T Consensus 77 ~~~~~ii~ls~~ 88 (154)
T 2rjn_A 77 YPDIERVVISGY 88 (154)
T ss_dssp CTTSEEEEEECG
T ss_pred CCCCcEEEEecC
Confidence 558999887643
|
| >2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=86.79 E-value=0.86 Score=36.31 Aligned_cols=84 Identities=8% Similarity=0.052 Sum_probs=47.7
Q ss_pred ccEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCC-CCC-CCCchhHHHHHHH
Q 046651 4 FVRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPG-SPA-CPEDIGICLRVLL 81 (392)
Q Consensus 4 ~~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPG-sp~-~~~d~gi~~~ll~ 81 (392)
.+|+||||........+.+.|.. .|..+..+.+ .++....+ +...+|.||+--.-. ... ....+.++.++-.
T Consensus 3 ~~~ilivdd~~~~~~~l~~~L~~-~g~~v~~~~~----~~~a~~~l-~~~~~dlvi~d~~~~~~~~~~~~g~~~~~~l~~ 76 (140)
T 2qr3_A 3 LGTIIIVDDNKGVLTAVQLLLKN-HFSKVITLSS----PVSLSTVL-REENPEVVLLDMNFTSGINNGNEGLFWLHEIKR 76 (140)
T ss_dssp CCEEEEECSCHHHHHHHHHHHTT-TSSEEEEECC----HHHHHHHH-HHSCEEEEEEETTTTC-----CCHHHHHHHHHH
T ss_pred CceEEEEeCCHHHHHHHHHHHHh-CCcEEEEeCC----HHHHHHHH-HcCCCCEEEEeCCcCCCCCCCccHHHHHHHHHh
Confidence 57899999865555566677766 5776654432 34544443 235699999943211 000 1122344444444
Q ss_pred HcCCCCEEEEcH
Q 046651 82 ECWDVPILGVCL 93 (392)
Q Consensus 82 ~~~~iPILGVCL 93 (392)
....+||+-+.-
T Consensus 77 ~~~~~~ii~ls~ 88 (140)
T 2qr3_A 77 QYRDLPVVLFTA 88 (140)
T ss_dssp HCTTCCEEEEEE
T ss_pred hCcCCCEEEEEC
Confidence 456899988863
|
| >3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=86.16 E-value=1.4 Score=35.23 Aligned_cols=84 Identities=11% Similarity=0.143 Sum_probs=49.5
Q ss_pred CccEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHH-
Q 046651 3 EFVRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLL- 81 (392)
Q Consensus 3 ~~~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~- 81 (392)
..+|+||||........+.+.|.. .|..+..+.+ .++....+ +...+|.||+--. -|. ...+.++.++-.
T Consensus 5 ~~~~iLivdd~~~~~~~l~~~l~~-~g~~v~~~~~----~~~a~~~l-~~~~~dlvi~d~~--l~~-~~g~~~~~~l~~~ 75 (140)
T 3grc_A 5 PRPRILICEDDPDIARLLNLMLEK-GGFDSDMVHS----AAQALEQV-ARRPYAAMTVDLN--LPD-QDGVSLIRALRRD 75 (140)
T ss_dssp CCSEEEEECSCHHHHHHHHHHHHH-TTCEEEEECS----HHHHHHHH-HHSCCSEEEECSC--CSS-SCHHHHHHHHHTS
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHH-CCCeEEEECC----HHHHHHHH-HhCCCCEEEEeCC--CCC-CCHHHHHHHHHhC
Confidence 347999999865555567777776 7877544432 44554443 3367999999422 111 122344434332
Q ss_pred -HcCCCCEEEEcHHH
Q 046651 82 -ECWDVPILGVCLGH 95 (392)
Q Consensus 82 -~~~~iPILGVCLGh 95 (392)
...++||+-+.-..
T Consensus 76 ~~~~~~~ii~~s~~~ 90 (140)
T 3grc_A 76 SRTRDLAIVVVSANA 90 (140)
T ss_dssp GGGTTCEEEEECTTH
T ss_pred cccCCCCEEEEecCC
Confidence 23589999887544
|
| >3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405} | Back alignment and structure |
|---|
Probab=85.96 E-value=1.3 Score=35.55 Aligned_cols=83 Identities=16% Similarity=0.131 Sum_probs=48.5
Q ss_pred CccEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcc-cCCcCEEEECCCCCCCCCCCchhHHHHHHH
Q 046651 3 EFVRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYE-ENAFDNIVISPGPGSPACPEDIGICLRVLL 81 (392)
Q Consensus 3 ~~~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e-~~~fDgIVISpGPGsp~~~~d~gi~~~ll~ 81 (392)
..+|+||||........+...|.. .|..+.... +.++....+.+ ...+|.||+--.- | ....+.++.++-.
T Consensus 2 ~~~~ilivdd~~~~~~~l~~~l~~-~g~~v~~~~----~~~~a~~~~~~~~~~~dlvi~d~~l--~-~~~g~~~~~~l~~ 73 (143)
T 3jte_A 2 SLAKILVIDDESTILQNIKFLLEI-DGNEVLTAS----SSTEGLRIFTENCNSIDVVITDMKM--P-KLSGMDILREIKK 73 (143)
T ss_dssp -CCEEEEECSCHHHHHHHHHHHHH-TTCEEEEES----SHHHHHHHHHHTTTTCCEEEEESCC--S-SSCHHHHHHHHHH
T ss_pred CCCEEEEEcCCHHHHHHHHHHHHh-CCceEEEeC----CHHHHHHHHHhCCCCCCEEEEeCCC--C-CCcHHHHHHHHHH
Confidence 357899999765555667777776 687655433 24455544432 3579999994221 1 1123344444443
Q ss_pred HcCCCCEEEEcH
Q 046651 82 ECWDVPILGVCL 93 (392)
Q Consensus 82 ~~~~iPILGVCL 93 (392)
...++||+-+.-
T Consensus 74 ~~~~~~ii~ls~ 85 (143)
T 3jte_A 74 ITPHMAVIILTG 85 (143)
T ss_dssp HCTTCEEEEEEC
T ss_pred hCCCCeEEEEEC
Confidence 455889887764
|
| >2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae} | Back alignment and structure |
|---|
Probab=85.58 E-value=1.9 Score=33.91 Aligned_cols=84 Identities=18% Similarity=0.104 Sum_probs=47.9
Q ss_pred CccEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHH
Q 046651 3 EFVRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLE 82 (392)
Q Consensus 3 ~~~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~ 82 (392)
..+++||||........+.+.|.. .|..++.+. +.++....+.+...+|.||+--. -|.....+.++.++-..
T Consensus 4 ~~~~ilivdd~~~~~~~l~~~L~~-~g~~v~~~~----~~~~a~~~l~~~~~~dlvi~d~~--l~~~~~g~~~~~~l~~~ 76 (132)
T 2rdm_A 4 EAVTILLADDEAILLLDFESTLTD-AGFLVTAVS----SGAKAIEMLKSGAAIDGVVTDIR--FCQPPDGWQVARVAREI 76 (132)
T ss_dssp SSCEEEEECSSHHHHHHHHHHHHH-TTCEEEEES----SHHHHHHHHHTTCCCCEEEEESC--CSSSSCHHHHHHHHHHH
T ss_pred CCceEEEEcCcHHHHHHHHHHHHH-cCCEEEEEC----CHHHHHHHHHcCCCCCEEEEeee--CCCCCCHHHHHHHHHhc
Confidence 457999999865555567777775 687665432 24555544422127999998422 12101223444444333
Q ss_pred cCCCCEEEEcH
Q 046651 83 CWDVPILGVCL 93 (392)
Q Consensus 83 ~~~iPILGVCL 93 (392)
...+||+-+.-
T Consensus 77 ~~~~~ii~~s~ 87 (132)
T 2rdm_A 77 DPNMPIVYISG 87 (132)
T ss_dssp CTTCCEEEEES
T ss_pred CCCCCEEEEeC
Confidence 45788887753
|
| >3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0 | Back alignment and structure |
|---|
Probab=85.38 E-value=0.99 Score=35.49 Aligned_cols=81 Identities=12% Similarity=0.192 Sum_probs=46.8
Q ss_pred CccEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHH
Q 046651 3 EFVRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLE 82 (392)
Q Consensus 3 ~~~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~ 82 (392)
..+|+||||........+.+.|.. .|..+..+. +.++....+ +...+|.||+--. -| ....+.++.++-..
T Consensus 2 ~~~~ilivdd~~~~~~~l~~~L~~-~g~~v~~~~----~~~~a~~~l-~~~~~dlii~D~~--l~-~~~g~~~~~~l~~~ 72 (127)
T 3i42_A 2 SLQQALIVEDYQAAAETFKELLEM-LGFQADYVM----SGTDALHAM-STRGYDAVFIDLN--LP-DTSGLALVKQLRAL 72 (127)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHHH-TTEEEEEES----SHHHHHHHH-HHSCCSEEEEESB--CS-SSBHHHHHHHHHHS
T ss_pred CcceEEEEcCCHHHHHHHHHHHHH-cCCCEEEEC----CHHHHHHHH-HhcCCCEEEEeCC--CC-CCCHHHHHHHHHhh
Confidence 357899999855555667777776 687554443 245555444 3367999999422 11 11223434443333
Q ss_pred --cCCCCEEEEc
Q 046651 83 --CWDVPILGVC 92 (392)
Q Consensus 83 --~~~iPILGVC 92 (392)
..++||+-+.
T Consensus 73 ~~~~~~~ii~~s 84 (127)
T 3i42_A 73 PMEKTSKFVAVS 84 (127)
T ss_dssp CCSSCCEEEEEE
T ss_pred hccCCCCEEEEE
Confidence 3578888765
|
| >1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A | Back alignment and structure |
|---|
Probab=85.16 E-value=1 Score=36.93 Aligned_cols=81 Identities=15% Similarity=0.144 Sum_probs=48.6
Q ss_pred CccEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHH
Q 046651 3 EFVRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLE 82 (392)
Q Consensus 3 ~~~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~ 82 (392)
..+++||||........+...|.. .|..+..+. +.++....+ +...+|.||+--.- |. ...+.++..+...
T Consensus 2 ~~~~ILivdd~~~~~~~l~~~L~~-~g~~v~~~~----~~~~a~~~l-~~~~~dliild~~l--~~-~~g~~~~~~l~~~ 72 (155)
T 1qkk_A 2 AAPSVFLIDDDRDLRKAMQQTLEL-AGFTVSSFA----SATEALAGL-SADFAGIVISDIRM--PG-MDGLALFRKILAL 72 (155)
T ss_dssp --CEEEEECSCHHHHHHHHHHHHH-TTCEEEEES----CHHHHHHTC-CTTCCSEEEEESCC--SS-SCHHHHHHHHHHH
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHH-cCcEEEEEC----CHHHHHHHH-HhCCCCEEEEeCCC--CC-CCHHHHHHHHHhh
Confidence 458999999865556667777776 687665432 245665544 33579999985321 11 1223444444434
Q ss_pred cCCCCEEEEc
Q 046651 83 CWDVPILGVC 92 (392)
Q Consensus 83 ~~~iPILGVC 92 (392)
...+||+-+.
T Consensus 73 ~~~~pii~ls 82 (155)
T 1qkk_A 73 DPDLPMILVT 82 (155)
T ss_dssp CTTSCEEEEE
T ss_pred CCCCCEEEEE
Confidence 5589998775
|
| >3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP} | Back alignment and structure |
|---|
Probab=85.12 E-value=1.1 Score=36.58 Aligned_cols=83 Identities=17% Similarity=0.101 Sum_probs=46.4
Q ss_pred CccEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHH
Q 046651 3 EFVRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLE 82 (392)
Q Consensus 3 ~~~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~ 82 (392)
..+|+||||........+.+.|....|..++..-. +.++....+ +...+|.||+--.- |. ...+.++.++-..
T Consensus 4 ~~~~ILivdd~~~~~~~l~~~L~~~~~~~v~~~~~---~~~~a~~~l-~~~~~dlii~D~~l--~~-~~g~~~~~~l~~~ 76 (153)
T 3cz5_A 4 STARIMLVDDHPIVREGYRRLIERRPGYAVVAEAA---DAGEAYRLY-RETTPDIVVMDLTL--PG-PGGIEATRHIRQW 76 (153)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHTTSTTEEEEEEES---SHHHHHHHH-HTTCCSEEEECSCC--SS-SCHHHHHHHHHHH
T ss_pred cccEEEEECCcHHHHHHHHHHHhhCCCcEEEEEeC---CHHHHHHHH-hcCCCCEEEEecCC--CC-CCHHHHHHHHHHh
Confidence 45799999986555555666665434655441222 245555444 33569999994221 11 1233444444434
Q ss_pred cCCCCEEEEc
Q 046651 83 CWDVPILGVC 92 (392)
Q Consensus 83 ~~~iPILGVC 92 (392)
...+||+-+.
T Consensus 77 ~~~~~ii~ls 86 (153)
T 3cz5_A 77 DGAARILIFT 86 (153)
T ss_dssp CTTCCEEEEE
T ss_pred CCCCeEEEEE
Confidence 5588988776
|
| >2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans} | Back alignment and structure |
|---|
Probab=85.09 E-value=0.96 Score=36.56 Aligned_cols=81 Identities=11% Similarity=0.109 Sum_probs=48.8
Q ss_pred ccEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHH--
Q 046651 4 FVRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLL-- 81 (392)
Q Consensus 4 ~~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~-- 81 (392)
.+||||||........+.+.|.. .|..+..+. +.++....+. ...+|.||+--.- |. ...+.++..+-.
T Consensus 8 ~~~iLivd~~~~~~~~l~~~L~~-~g~~v~~~~----~~~~a~~~l~-~~~~dlii~d~~l--~~-~~g~~~~~~l~~~~ 78 (147)
T 2zay_A 8 WWRIMLVDTQLPALAASISALSQ-EGFDIIQCG----NAIEAVPVAV-KTHPHLIITEANM--PK-ISGMDLFNSLKKNP 78 (147)
T ss_dssp CEEEEEECTTGGGGHHHHHHHHH-HTEEEEEES----SHHHHHHHHH-HHCCSEEEEESCC--SS-SCHHHHHHHHHTST
T ss_pred CceEEEEeCCHHHHHHHHHHHHH-cCCeEEEeC----CHHHHHHHHH-cCCCCEEEEcCCC--CC-CCHHHHHHHHHcCc
Confidence 47899999877777778888877 587655433 2445544332 2469999994221 11 122344444333
Q ss_pred HcCCCCEEEEcH
Q 046651 82 ECWDVPILGVCL 93 (392)
Q Consensus 82 ~~~~iPILGVCL 93 (392)
....+||+-+.-
T Consensus 79 ~~~~~pii~ls~ 90 (147)
T 2zay_A 79 QTASIPVIALSG 90 (147)
T ss_dssp TTTTSCEEEEES
T ss_pred ccCCCCEEEEeC
Confidence 235899988764
|
| >2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A | Back alignment and structure |
|---|
Probab=84.73 E-value=2.3 Score=32.83 Aligned_cols=79 Identities=16% Similarity=0.247 Sum_probs=44.4
Q ss_pred cEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHHcC
Q 046651 5 VRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLECW 84 (392)
Q Consensus 5 ~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~~~ 84 (392)
||+||||........+.+.|.. .|..+..+.+ .++....+ +...+|.||+--. -|. ...+.++.++.....
T Consensus 1 ~~ilivdd~~~~~~~l~~~l~~-~g~~v~~~~~----~~~a~~~~-~~~~~dlil~D~~--l~~-~~g~~~~~~l~~~~~ 71 (121)
T 2pl1_A 1 MRVLVVEDNALLRHHLKVQIQD-AGHQVDDAED----AKEADYYL-NEHIPDIAIVDLG--LPD-EDGLSLIRRWRSNDV 71 (121)
T ss_dssp CEEEEECSCHHHHHHHHHHHHH-TTCEEEEESS----HHHHHHHH-HHSCCSEEEECSC--CSS-SCHHHHHHHHHHTTC
T ss_pred CeEEEEeCcHHHHHHHHHHHhh-cCCEEEEeCC----HHHHHHHH-hccCCCEEEEecC--CCC-CCHHHHHHHHHhcCC
Confidence 6899999755555566677766 6876544332 33444333 2257999998422 121 122333333332245
Q ss_pred CCCEEEEc
Q 046651 85 DVPILGVC 92 (392)
Q Consensus 85 ~iPILGVC 92 (392)
.+|++-+.
T Consensus 72 ~~~ii~~s 79 (121)
T 2pl1_A 72 SLPILVLT 79 (121)
T ss_dssp CSCEEEEE
T ss_pred CCCEEEEe
Confidence 78988774
|
| >3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1} | Back alignment and structure |
|---|
Probab=84.58 E-value=1.2 Score=35.59 Aligned_cols=81 Identities=10% Similarity=0.051 Sum_probs=46.2
Q ss_pred CccEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHH-
Q 046651 3 EFVRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLL- 81 (392)
Q Consensus 3 ~~~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~- 81 (392)
..+++||||........+.+.|.. .|..+..+. +.++....+ +...+|.||+--. -|. ...+.++.++-.
T Consensus 6 ~~~~iLivdd~~~~~~~l~~~L~~-~g~~v~~~~----~~~~a~~~l-~~~~~dlii~d~~--l~~-~~g~~~~~~l~~~ 76 (142)
T 3cg4_A 6 HKGDVMIVDDDAHVRIAVKTILSD-AGFHIISAD----SGGQCIDLL-KKGFSGVVLLDIM--MPG-MDGWDTIRAILDN 76 (142)
T ss_dssp CCCEEEEECSCHHHHHHHHHHHHH-TTCEEEEES----SHHHHHHHH-HTCCCEEEEEESC--CSS-SCHHHHHHHHHHT
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHH-CCeEEEEeC----CHHHHHHHH-HhcCCCEEEEeCC--CCC-CCHHHHHHHHHhh
Confidence 357899999865566667777877 587654432 245555444 3356999998422 111 122333433333
Q ss_pred -HcCCCCEEEEc
Q 046651 82 -ECWDVPILGVC 92 (392)
Q Consensus 82 -~~~~iPILGVC 92 (392)
....+||+.+.
T Consensus 77 ~~~~~~pii~~s 88 (142)
T 3cg4_A 77 SLEQGIAIVMLT 88 (142)
T ss_dssp TCCTTEEEEEEE
T ss_pred cccCCCCEEEEE
Confidence 13467777664
|
| >3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi} | Back alignment and structure |
|---|
Probab=84.42 E-value=1.6 Score=36.11 Aligned_cols=80 Identities=9% Similarity=0.095 Sum_probs=46.5
Q ss_pred cEEEEEECCCCchHHHHHHHHHhCCCCeE-EEeCCCCCHHHHHhhhcccC--CcCEEEECCCCCCCCCCCchhHHHHHHH
Q 046651 5 VRTLLIDNYDSYTYNIYQELSTINGVPPV-VVRNDEWTWRDICRYLYEEN--AFDNIVISPGPGSPACPEDIGICLRVLL 81 (392)
Q Consensus 5 ~r~LlIDnyDSyT~nl~q~L~~v~G~~pv-VV~nd~~~~eel~~~l~e~~--~fDgIVISpGPGsp~~~~d~gi~~~ll~ 81 (392)
+||||||........|.+.|.. .|..++ .+.+ .+++...+.+ . .+|.||+--.- |. ...+.++.++-.
T Consensus 37 ~~Ilivdd~~~~~~~l~~~L~~-~g~~v~~~~~~----~~~al~~l~~-~~~~~dliilD~~l--~~-~~g~~~~~~lr~ 107 (157)
T 3hzh_A 37 FNVLIVDDSVFTVKQLTQIFTS-EGFNIIDTAAD----GEEAVIKYKN-HYPNIDIVTLXITM--PK-MDGITCLSNIME 107 (157)
T ss_dssp CEEEEECSCHHHHHHHHHHHHH-TTCEEEEEESS----HHHHHHHHHH-HGGGCCEEEECSSC--SS-SCHHHHHHHHHH
T ss_pred eEEEEEeCCHHHHHHHHHHHHh-CCCeEEEEECC----HHHHHHHHHh-cCCCCCEEEEeccC--CC-ccHHHHHHHHHh
Confidence 6899999754455556677766 687664 3322 3455444422 3 68999994221 11 223444444444
Q ss_pred HcCCCCEEEEcH
Q 046651 82 ECWDVPILGVCL 93 (392)
Q Consensus 82 ~~~~iPILGVCL 93 (392)
....+||+-+.-
T Consensus 108 ~~~~~~ii~ls~ 119 (157)
T 3hzh_A 108 FDKNARVIMISA 119 (157)
T ss_dssp HCTTCCEEEEES
T ss_pred hCCCCcEEEEec
Confidence 456899987763
|
| >3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0 | Back alignment and structure |
|---|
Probab=84.29 E-value=1.1 Score=35.83 Aligned_cols=81 Identities=10% Similarity=-0.015 Sum_probs=47.8
Q ss_pred ccEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHHc
Q 046651 4 FVRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLEC 83 (392)
Q Consensus 4 ~~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~~ 83 (392)
.|||||||........+-+.|.. .|..+..+.+ .++....+ +...+|.||+--.- | ....+.++.++-...
T Consensus 7 ~~~ilivdd~~~~~~~l~~~L~~-~~~~v~~~~~----~~~a~~~l-~~~~~dlvi~d~~l--~-~~~g~~~~~~l~~~~ 77 (137)
T 3hdg_A 7 ALKILIVEDDTDAREWLSTIISN-HFPEVWSAGD----GEEGERLF-GLHAPDVIITDIRM--P-KLGGLEMLDRIKAGG 77 (137)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHT-TCSCEEEESS----HHHHHHHH-HHHCCSEEEECSSC--S-SSCHHHHHHHHHHTT
T ss_pred ccEEEEEeCCHHHHHHHHHHHHh-cCcEEEEECC----HHHHHHHH-hccCCCEEEEeCCC--C-CCCHHHHHHHHHhcC
Confidence 47999999865555667777776 6766655433 34444433 23579999994321 1 122344444443334
Q ss_pred CCCCEEEEcH
Q 046651 84 WDVPILGVCL 93 (392)
Q Consensus 84 ~~iPILGVCL 93 (392)
..+||+-+.-
T Consensus 78 ~~~~ii~~s~ 87 (137)
T 3hdg_A 78 AKPYVIVISA 87 (137)
T ss_dssp CCCEEEECCC
T ss_pred CCCcEEEEec
Confidence 5888887763
|
| >3ewn_A THIJ/PFPI family protein; monomer, PSI nysgrc, structural genomics, protein structure initiative; 1.65A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=83.47 E-value=0.38 Score=45.25 Aligned_cols=89 Identities=17% Similarity=0.202 Sum_probs=54.3
Q ss_pred cEEEEEECCCCchH----HHHHHHHHhCCCCeEEEeCCCCC--------------HHHHHhhhcccCCcCEEEECCCC-C
Q 046651 5 VRTLLIDNYDSYTY----NIYQELSTINGVPPVVVRNDEWT--------------WRDICRYLYEENAFDNIVISPGP-G 65 (392)
Q Consensus 5 ~r~LlIDnyDSyT~----nl~q~L~~v~G~~pvVV~nd~~~--------------~eel~~~l~e~~~fDgIVISpGP-G 65 (392)
+||+|+= +|.|.. ..++.|....|.++.++..+.-. ++++. ..||.|||.||. |
T Consensus 24 ~~I~ill-~~gf~~~e~~~p~dvl~~~~~~~v~~vs~~~~~V~~~~G~~i~~d~~l~~~~------~~yD~liVPGG~~g 96 (253)
T 3ewn_A 24 EQIAMLV-YPGMTVMDLVGPHCMFGSLMGAKIYIVAKSLDPVTSDAGLAIVPTATFGTCP------RDLTVLFAPGGTDG 96 (253)
T ss_dssp CEEEEEC-CTTBCHHHHHHHHHHHTTSTTCEEEEEESSSSCEECTTSCEECCSEETTTSC------SSCSEEEECCBSHH
T ss_pred eEEEEEe-CCCCcHHHHHHHHHHHHhCCCCEEEEEeCCCCeEEcCCCCEEeCCcCHHHcC------CCCCEEEECCCccc
Confidence 4666664 455532 35566644468888777554311 11211 357999997776 5
Q ss_pred CCCCCCchhHHHHHHHH--cCCCCEEEEcHHHHHHHHH
Q 046651 66 SPACPEDIGICLRVLLE--CWDVPILGVCLGHQALGFV 101 (392)
Q Consensus 66 sp~~~~d~gi~~~ll~~--~~~iPILGVCLGhQ~La~a 101 (392)
......+ .-..++|++ ..+++|.+||-|-.+|+.+
T Consensus 97 ~~~l~~~-~~l~~~Lr~~~~~gk~IaaICtG~~lLa~A 133 (253)
T 3ewn_A 97 TLAAASD-AETLAFMADRGARAKYITSVCSGSLILGAA 133 (253)
T ss_dssp HHHHTTC-HHHHHHHHHHHTTCSEEEEETTHHHHHHHT
T ss_pred hhhhccC-HHHHHHHHHHHHcCCEEEEEChHHHHHHHc
Confidence 3221222 234566665 3589999999999999986
|
| >2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=83.33 E-value=0.88 Score=36.55 Aligned_cols=80 Identities=11% Similarity=0.170 Sum_probs=47.4
Q ss_pred ccEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHHc
Q 046651 4 FVRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLEC 83 (392)
Q Consensus 4 ~~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~~ 83 (392)
.+++||||........+.+.|.. .|..+..+. +.++....+ +...+|.||+-- .|. ...+.++..+-...
T Consensus 4 ~~~iLivdd~~~~~~~l~~~L~~-~g~~v~~~~----~~~~a~~~l-~~~~~dlvi~d~---~~~-~~g~~~~~~l~~~~ 73 (142)
T 2qxy_A 4 TPTVMVVDESRITFLAVKNALEK-DGFNVIWAK----NEQEAFTFL-RREKIDLVFVDV---FEG-EESLNLIRRIREEF 73 (142)
T ss_dssp CCEEEEECSCHHHHHHHHHHHGG-GTCEEEEES----SHHHHHHHH-TTSCCSEEEEEC---TTT-HHHHHHHHHHHHHC
T ss_pred CCeEEEEeCCHHHHHHHHHHHHh-CCCEEEEEC----CHHHHHHHH-hccCCCEEEEeC---CCC-CcHHHHHHHHHHHC
Confidence 46899999765555667777776 687665432 245555544 336799999943 121 11223333333334
Q ss_pred CCCCEEEEcH
Q 046651 84 WDVPILGVCL 93 (392)
Q Consensus 84 ~~iPILGVCL 93 (392)
.++||+.+.-
T Consensus 74 ~~~pii~ls~ 83 (142)
T 2qxy_A 74 PDTKVAVLSA 83 (142)
T ss_dssp TTCEEEEEES
T ss_pred CCCCEEEEEC
Confidence 5799998863
|
| >2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus} | Back alignment and structure |
|---|
Probab=83.26 E-value=1.4 Score=33.28 Aligned_cols=78 Identities=15% Similarity=0.076 Sum_probs=45.2
Q ss_pred cEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHHc-
Q 046651 5 VRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLEC- 83 (392)
Q Consensus 5 ~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~~- 83 (392)
+++||||........+.+.|.. .|..+..+.+ .++....+. ...+|.||+.-.- +. .....++ +.+++.
T Consensus 2 ~~iliv~~~~~~~~~l~~~l~~-~g~~v~~~~~----~~~~~~~l~-~~~~dlii~d~~~--~~-~~~~~~~-~~l~~~~ 71 (119)
T 2j48_A 2 GHILLLEEEDEAATVVCEMLTA-AGFKVIWLVD----GSTALDQLD-LLQPIVILMAWPP--PD-QSCLLLL-QHLREHQ 71 (119)
T ss_dssp CEEEEECCCHHHHHHHHHHHHH-TTCEEEEESC----HHHHHHHHH-HHCCSEEEEECST--TC-CTHHHHH-HHHHHTC
T ss_pred CEEEEEeCCHHHHHHHHHHHHh-CCcEEEEecC----HHHHHHHHH-hcCCCEEEEecCC--CC-CCHHHHH-HHHHhcc
Confidence 6899999865556667777776 6876654432 344444332 2468999984321 11 1223333 334442
Q ss_pred --CCCCEEEEc
Q 046651 84 --WDVPILGVC 92 (392)
Q Consensus 84 --~~iPILGVC 92 (392)
..+|++-+.
T Consensus 72 ~~~~~~ii~~~ 82 (119)
T 2j48_A 72 ADPHPPLVLFL 82 (119)
T ss_dssp CCSSCCCEEEE
T ss_pred ccCCCCEEEEe
Confidence 578887665
|
| >3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea} | Back alignment and structure |
|---|
Probab=83.16 E-value=2 Score=34.16 Aligned_cols=81 Identities=14% Similarity=0.112 Sum_probs=46.5
Q ss_pred ccEEEEEECCCCchHHHHHHHHHhCCCC-eEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHH
Q 046651 4 FVRTLLIDNYDSYTYNIYQELSTINGVP-PVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLE 82 (392)
Q Consensus 4 ~~r~LlIDnyDSyT~nl~q~L~~v~G~~-pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~ 82 (392)
.+++||||........+.+.|....|.. +..+.+ .++....+ +...+|.||+--.- |. ...+.++.+ +++
T Consensus 8 ~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~----~~~a~~~l-~~~~~dlii~d~~l--~~-~~g~~~~~~-l~~ 78 (143)
T 3cnb_A 8 DFSILIIEDDKEFADMLTQFLENLFPYAKIKIAYN----PFDAGDLL-HTVKPDVVMLDLMM--VG-MDGFSICHR-IKS 78 (143)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHHCTTCEEEEECS----HHHHHHHH-HHTCCSEEEEETTC--TT-SCHHHHHHH-HHT
T ss_pred CceEEEEECCHHHHHHHHHHHHhccCccEEEEECC----HHHHHHHH-HhcCCCEEEEeccc--CC-CcHHHHHHH-HHh
Confidence 4789999976555556777777646888 444332 34444433 23579999995321 11 122333333 443
Q ss_pred ---cCCCCEEEEcH
Q 046651 83 ---CWDVPILGVCL 93 (392)
Q Consensus 83 ---~~~iPILGVCL 93 (392)
...+||+-+.-
T Consensus 79 ~~~~~~~~ii~~s~ 92 (143)
T 3cnb_A 79 TPATANIIVIAMTG 92 (143)
T ss_dssp STTTTTSEEEEEES
T ss_pred CccccCCcEEEEeC
Confidence 35789988763
|
| >3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5} | Back alignment and structure |
|---|
Probab=82.64 E-value=1.8 Score=35.40 Aligned_cols=81 Identities=14% Similarity=0.049 Sum_probs=47.1
Q ss_pred ccEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHHc
Q 046651 4 FVRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLEC 83 (392)
Q Consensus 4 ~~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~~ 83 (392)
.++|||||........|-+.|.. .|..+..+. +.++....+ +...+|.||+--. -| ....+.++.++-...
T Consensus 14 ~~~ILivdd~~~~~~~l~~~L~~-~g~~v~~~~----~~~~a~~~l-~~~~~dlvi~D~~--l~-~~~g~~~~~~l~~~~ 84 (153)
T 3hv2_A 14 RPEILLVDSQEVILQRLQQLLSP-LPYTLHFAR----DATQALQLL-ASREVDLVISAAH--LP-QMDGPTLLARIHQQY 84 (153)
T ss_dssp CCEEEEECSCHHHHHHHHHHHTT-SSCEEEEES----SHHHHHHHH-HHSCCSEEEEESC--CS-SSCHHHHHHHHHHHC
T ss_pred CceEEEECCCHHHHHHHHHHhcc-cCcEEEEEC----CHHHHHHHH-HcCCCCEEEEeCC--CC-cCcHHHHHHHHHhHC
Confidence 47899999755555556666765 576654432 244554433 3367999999422 11 112334444443345
Q ss_pred CCCCEEEEcH
Q 046651 84 WDVPILGVCL 93 (392)
Q Consensus 84 ~~iPILGVCL 93 (392)
.++||+-+.-
T Consensus 85 ~~~~ii~~s~ 94 (153)
T 3hv2_A 85 PSTTRILLTG 94 (153)
T ss_dssp TTSEEEEECC
T ss_pred CCCeEEEEEC
Confidence 6889987764
|
| >3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0 | Back alignment and structure |
|---|
Probab=82.55 E-value=2 Score=34.09 Aligned_cols=82 Identities=11% Similarity=0.069 Sum_probs=47.4
Q ss_pred ccEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHH-
Q 046651 4 FVRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLE- 82 (392)
Q Consensus 4 ~~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~- 82 (392)
.+++||||........+-+.|.. .|..++.+.+ .++....+.+...+|.||+--.- |. ...+.++.++-..
T Consensus 7 ~~~ilivdd~~~~~~~l~~~L~~-~g~~v~~~~~----~~~a~~~~~~~~~~dlvi~D~~l--~~-~~g~~~~~~l~~~~ 78 (136)
T 3hdv_A 7 RPLVLVVDDNAVNREALILYLKS-RGIDAVGADG----AEEARLYLHYQKRIGLMITDLRM--QP-ESGLDLIRTIRASE 78 (136)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHH-TTCCEEEESS----HHHHHHHHHHCTTEEEEEECSCC--SS-SCHHHHHHHHHTST
T ss_pred CCeEEEECCCHHHHHHHHHHHHH-cCceEEEeCC----HHHHHHHHHhCCCCcEEEEeccC--CC-CCHHHHHHHHHhcC
Confidence 46899999865556667777777 6887765432 34444444333349999994221 11 1223333333322
Q ss_pred cCCCCEEEEcH
Q 046651 83 CWDVPILGVCL 93 (392)
Q Consensus 83 ~~~iPILGVCL 93 (392)
...+||+-+.-
T Consensus 79 ~~~~~ii~~s~ 89 (136)
T 3hdv_A 79 RAALSIIVVSG 89 (136)
T ss_dssp TTTCEEEEEES
T ss_pred CCCCCEEEEeC
Confidence 35789887764
|
| >3mgk_A Intracellular protease/amidase related enzyme (THIJ family); amidotranferase-like, structural genomics, PSI; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=82.33 E-value=0.37 Score=43.68 Aligned_cols=48 Identities=19% Similarity=0.220 Sum_probs=33.1
Q ss_pred CCcCEEEECCCCCCCCCCCchhHHHHHHHH--cCCCCEEEEcHHHHHHHHH
Q 046651 53 NAFDNIVISPGPGSPACPEDIGICLRVLLE--CWDVPILGVCLGHQALGFV 101 (392)
Q Consensus 53 ~~fDgIVISpGPGsp~~~~d~gi~~~ll~~--~~~iPILGVCLGhQ~La~a 101 (392)
..||.|||.||+|......+ ....++|++ ..+++|.+||-|-.+|+.+
T Consensus 64 ~~~D~livpGG~~~~~~~~~-~~~~~~l~~~~~~~k~iaaiC~G~~~La~a 113 (211)
T 3mgk_A 64 NIEKILFVPGGSGTREKVND-DNFINFIGNMVKESKYIISVCTGSALLSKA 113 (211)
T ss_dssp SSEEEEEECCSTHHHHHTTC-HHHHHHHHHHHHHCSEEEECTTHHHHHHHT
T ss_pred CCCCEEEECCCcchhhhcCC-HHHHHHHHHHHHcCCEEEEEchHHHHHHhc
Confidence 35899999877653221112 234566665 2489999999999999975
|
| >4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A | Back alignment and structure |
|---|
Probab=82.23 E-value=1.6 Score=35.62 Aligned_cols=83 Identities=12% Similarity=0.161 Sum_probs=46.6
Q ss_pred ccEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHHc
Q 046651 4 FVRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLEC 83 (392)
Q Consensus 4 ~~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~~ 83 (392)
.|||||||....+...|.+.|.. .|....|..... .++....+ +...+|.||+--. -|. ...+.++.++-...
T Consensus 20 m~~iLivdd~~~~~~~l~~~L~~-~~~~~~v~~~~~--~~~al~~l-~~~~~dlii~D~~--l~~-~~g~~~~~~l~~~~ 92 (150)
T 4e7p_A 20 HMKVLVAEDQSMLRDAMCQLLTL-QPDVESVLQAKN--GQEAIQLL-EKESVDIAILDVE--MPV-KTGLEVLEWIRSEK 92 (150)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHT-STTEEEEEEESS--HHHHHHHH-TTSCCSEEEECSS--CSS-SCHHHHHHHHHHTT
T ss_pred ccEEEEEcCCHHHHHHHHHHHHh-CCCcEEEEEECC--HHHHHHHh-hccCCCEEEEeCC--CCC-CcHHHHHHHHHHhC
Confidence 47899999755555556666765 443233333322 45555544 3467999999422 111 12334444443335
Q ss_pred CCCCEEEEcH
Q 046651 84 WDVPILGVCL 93 (392)
Q Consensus 84 ~~iPILGVCL 93 (392)
.++||+-+.-
T Consensus 93 ~~~~ii~ls~ 102 (150)
T 4e7p_A 93 LETKVVVVTT 102 (150)
T ss_dssp CSCEEEEEES
T ss_pred CCCeEEEEeC
Confidence 5889987764
|
| >3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0 | Back alignment and structure |
|---|
Probab=81.54 E-value=4.9 Score=32.15 Aligned_cols=83 Identities=13% Similarity=0.145 Sum_probs=48.6
Q ss_pred CccEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHH
Q 046651 3 EFVRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLE 82 (392)
Q Consensus 3 ~~~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~ 82 (392)
..+|+||||........+-+.|.. .|...+|..... .++....+ +...+|.||+--. -|. ...+.++ +.|++
T Consensus 4 ~~~~ILivdd~~~~~~~l~~~L~~-~~~~~~v~~~~~--~~~a~~~l-~~~~~dlii~D~~--l~~-~~g~~~~-~~lr~ 75 (144)
T 3kht_A 4 RSKRVLVVEDNPDDIALIRRVLDR-KDIHCQLEFVDN--GAKALYQV-QQAKYDLIILDIG--LPI-ANGFEVM-SAVRK 75 (144)
T ss_dssp -CEEEEEECCCHHHHHHHHHHHHH-TTCCEEEEEESS--HHHHHHHH-TTCCCSEEEECTT--CGG-GCHHHHH-HHHHS
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHh-cCCCeeEEEECC--HHHHHHHh-hcCCCCEEEEeCC--CCC-CCHHHHH-HHHHh
Confidence 347899999755555667777776 687754444333 45555544 3467999999422 111 1123333 33443
Q ss_pred ---cCCCCEEEEcH
Q 046651 83 ---CWDVPILGVCL 93 (392)
Q Consensus 83 ---~~~iPILGVCL 93 (392)
..++||+-+.-
T Consensus 76 ~~~~~~~pii~~s~ 89 (144)
T 3kht_A 76 PGANQHTPIVILTD 89 (144)
T ss_dssp SSTTTTCCEEEEET
T ss_pred cccccCCCEEEEeC
Confidence 35899998873
|
| >3qvl_A Putative hydantoin racemase; isomerase; HET: 5HY; 1.82A {Klebsiella pneumoniae subsp} PDB: 3qvk_A* 3qvj_A | Back alignment and structure |
|---|
Probab=81.49 E-value=6.2 Score=36.71 Aligned_cols=94 Identities=17% Similarity=0.124 Sum_probs=51.5
Q ss_pred ccEEEEEECCC--CchHHHHHHHHHhC--CCCeEEEeCCCC--------CHHHHHhhhc------ccCCcCEEEECCCCC
Q 046651 4 FVRTLLIDNYD--SYTYNIYQELSTIN--GVPPVVVRNDEW--------TWRDICRYLY------EENAFDNIVISPGPG 65 (392)
Q Consensus 4 ~~r~LlIDnyD--SyT~nl~q~L~~v~--G~~pvVV~nd~~--------~~eel~~~l~------e~~~fDgIVISpGPG 65 (392)
.||+|||.-.. ++|..|.+.++.+. |.+++.+..+.- +|......++ +...+|+|||+-.
T Consensus 1 ~mrilvINPnts~~~T~~i~~~~~~~~~p~~~i~~~t~~~gp~~i~~~~d~~~a~~~l~~~~~~l~~~g~d~iviaCn-- 78 (245)
T 3qvl_A 1 SVRIQVINPNTSLAMTETIGAAARAVAAPGTEILAVCPRAGVPSIEGHFDEAIAAVGVLEQIRAGREQGVDGHVIASF-- 78 (245)
T ss_dssp CEEEEEECSSCCHHHHHHHHHHHHHHCCTTEEEEEECCSSSCSSCCSHHHHHHHHHHHHHHHHHHHHHTCSEEEEC-C--
T ss_pred CCEEEEEeCCCCHHHHHHHHHHHHHhcCCCCEEEEEeCCCCchhhcChhHHHHHHHHHHHHHHHHHHCCCCEEEEeCC--
Confidence 48999997654 36777777777765 344444433211 1221111111 2357999999532
Q ss_pred CCCCCCchhHHHHHHHHcCCCCEEEEcHHHHHHHHHhCCee
Q 046651 66 SPACPEDIGICLRVLLECWDVPILGVCLGHQALGFVHGADI 106 (392)
Q Consensus 66 sp~~~~d~gi~~~ll~~~~~iPILGVCLGhQ~La~a~Gg~V 106 (392)
.+-++ +.+++.-++||+||.--.-..+...|.++
T Consensus 79 -----t~~~l--~~lr~~~~iPvigi~e~~~~~a~~~~~ri 112 (245)
T 3qvl_A 79 -----GDPGL--LAARELAQGPVIGIAEAAMHMATMVATRF 112 (245)
T ss_dssp -----CCTTH--HHHHHHCSSCEEEHHHHHHHHHHHHCSCE
T ss_pred -----ChhHH--HHHHHHcCCCEECccHHHHHHHHHcCCEE
Confidence 23233 55666449999999654333333345444
|
| >3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB} | Back alignment and structure |
|---|
Probab=81.42 E-value=2 Score=35.39 Aligned_cols=79 Identities=19% Similarity=0.271 Sum_probs=47.7
Q ss_pred ccEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHHc
Q 046651 4 FVRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLEC 83 (392)
Q Consensus 4 ~~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~~ 83 (392)
.+||||||........+.+.|.. .|..+..+. +.++....+ +...+|.||+--. -|. ...+.++ +.|++.
T Consensus 7 ~~~ILivdd~~~~~~~l~~~L~~-~g~~v~~~~----~~~~al~~l-~~~~~dlii~D~~--l~~-~~g~~~~-~~lr~~ 76 (154)
T 3gt7_A 7 AGEILIVEDSPTQAEHLKHILEE-TGYQTEHVR----NGREAVRFL-SLTRPDLIISDVL--MPE-MDGYALC-RWLKGQ 76 (154)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHT-TTCEEEEES----SHHHHHHHH-TTCCCSEEEEESC--CSS-SCHHHHH-HHHHHS
T ss_pred CCcEEEEeCCHHHHHHHHHHHHH-CCCEEEEeC----CHHHHHHHH-HhCCCCEEEEeCC--CCC-CCHHHHH-HHHHhC
Confidence 47999999865555667777776 687665442 245555544 3467999999421 111 1223333 334442
Q ss_pred ---CCCCEEEEc
Q 046651 84 ---WDVPILGVC 92 (392)
Q Consensus 84 ---~~iPILGVC 92 (392)
.++||+-+.
T Consensus 77 ~~~~~~pii~~s 88 (154)
T 3gt7_A 77 PDLRTIPVILLT 88 (154)
T ss_dssp TTTTTSCEEEEE
T ss_pred CCcCCCCEEEEE
Confidence 589999876
|
| >3bhn_A THIJ/PFPI domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.76A {Shewanella loihica pv-4} | Back alignment and structure |
|---|
Probab=81.02 E-value=0.27 Score=45.73 Aligned_cols=48 Identities=25% Similarity=0.278 Sum_probs=31.7
Q ss_pred CCcCEEEECCC-CCCCCCCCchhHHHHHHHHcCCC-CEEEEcHHHHHHHHH
Q 046651 53 NAFDNIVISPG-PGSPACPEDIGICLRVLLECWDV-PILGVCLGHQALGFV 101 (392)
Q Consensus 53 ~~fDgIVISpG-PGsp~~~~d~gi~~~ll~~~~~i-PILGVCLGhQ~La~a 101 (392)
..||.|||.|| +|......+ ....++|....+. +|.+||-|-.+|+.+
T Consensus 79 ~~~D~liVPGG~~g~~~l~~~-~~l~~~L~~~~~~~~IaaIC~G~~lLa~A 128 (236)
T 3bhn_A 79 KEQDVVLITSGYRGIPAALQD-ENFMSALKLDPSRQLIGSICAGSFVLHEL 128 (236)
T ss_dssp GGCSEEEECCCTTHHHHHHTC-HHHHHHCCCCTTTCEEEEETTHHHHHHHT
T ss_pred cCCCEEEEcCCccCHhhhccC-HHHHHHHHhCCCCCEEEEEcHHHHHHHHc
Confidence 56999999887 554321122 2234555223355 999999999999986
|
| >2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=80.77 E-value=7 Score=31.58 Aligned_cols=86 Identities=16% Similarity=0.057 Sum_probs=46.7
Q ss_pred CccEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHH
Q 046651 3 EFVRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLE 82 (392)
Q Consensus 3 ~~~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~ 82 (392)
..|||||||........|.+.|....|...+..-. +.++....+-+...+|.||+--.- |. ...+.++.++-..
T Consensus 2 ~~~~iLivdd~~~~~~~l~~~L~~~~g~~~v~~~~---~~~~a~~~l~~~~~~dlvi~d~~l--~~-~~g~~~~~~l~~~ 75 (154)
T 2qsj_A 2 SLTVVLIVDDHHLIRAGAKNLLEGAFSGMRVEGAE---TVSDALAFLEADNTVDLILLDVNL--PD-AEAIDGLVRLKRF 75 (154)
T ss_dssp -CEEEEEECSCHHHHHHHHHHHHHHCTTEEEEEES---SHHHHHHHHHTTCCCSEEEECC---------CHHHHHHHHHH
T ss_pred CccEEEEEcCCHHHHHHHHHHHHhCCCceEEEEec---CHHHHHHHHhccCCCCEEEEeCCC--CC-CchHHHHHHHHHh
Confidence 35799999976555666777777744663322222 245555554222569999994321 11 1233444444444
Q ss_pred cCCCCEEEEcHH
Q 046651 83 CWDVPILGVCLG 94 (392)
Q Consensus 83 ~~~iPILGVCLG 94 (392)
...+||+-++--
T Consensus 76 ~~~~~ii~ls~~ 87 (154)
T 2qsj_A 76 DPSNAVALISGE 87 (154)
T ss_dssp CTTSEEEEC---
T ss_pred CCCCeEEEEeCC
Confidence 568999988754
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 392 | ||||
| d1qdlb_ | 195 | c.23.16.1 (B:) Anthranilate synthase GAT subunit, | 3e-28 | |
| d1a9xb2 | 228 | c.23.16.1 (B:1653-1880) Carbamoyl phosphate synthe | 1e-18 | |
| d1wl8a1 | 188 | c.23.16.1 (A:1-188) GMP synthase subunit A, GuaAA | 4e-18 | |
| d1i7qb_ | 192 | c.23.16.1 (B:) Anthranilate synthase GAT subunit, | 3e-17 | |
| d1i7qb_ | 192 | c.23.16.1 (B:) Anthranilate synthase GAT subunit, | 2e-11 | |
| d2a9va1 | 196 | c.23.16.1 (A:1-196) GMP synthase subunit A, GuaAA | 2e-16 | |
| d1gpma2 | 205 | c.23.16.1 (A:3-207) GMP synthetase {Escherichia co | 3e-14 | |
| d1l9xa_ | 288 | c.23.16.1 (A:) gamma-glutamyl hydrolase {Human (Ho | 7e-14 | |
| d1k9vf_ | 200 | c.23.16.1 (F:) GAT subunit, HisH, (or domain) of i | 0.003 |
| >d1qdlb_ c.23.16.1 (B:) Anthranilate synthase GAT subunit, TrpG {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 195 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: Class I glutamine amidotransferases (GAT) domain: Anthranilate synthase GAT subunit, TrpG species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 107 bits (268), Expect = 3e-28
Identities = 84/251 (33%), Positives = 112/251 (44%), Gaps = 67/251 (26%)
Query: 7 TLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGS 66
TL+IDNYDS+ YNI Q + + G P+V+RNDE + + I E D ++ISPGPG+
Sbjct: 4 TLIIDNYDSFVYNIAQIVGEL-GSYPIVIRNDEISIKGI-----ERIDPDRLIISPGPGT 57
Query: 67 PACPEDIGICLRVLLEC-WDVPILGVCLGHQALGFVHGADIVHAPEPVHGRLSEIVHN-- 123
P EDIG+ L V+ PILGVCLGHQA+G+ GA I A + HG++S I+
Sbjct: 58 PEKREDIGVSLDVIKYLGKRTPILGVCLGHQAIGYAFGAKIRRARKVFHGKISNIILVNN 117
Query: 124 -GDRLFHDIPSGQNSGFKVVRYHSLIIDADSLPKELIPIAWSNSADGFSYLGTLQSGEIP 182
L++ I FK RYHS
Sbjct: 118 SPLSLYYGIAKE----FKATRYHS------------------------------------ 137
Query: 183 DAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGIMHSTRPHYGVQFHPESIA 242
+ ++ +I + +M I H P YGVQFHPES+
Sbjct: 138 --------------LVVDEVHRPLIVDAISAEDN---EIMAIHHEEYPIYGVQFHPESVG 180
Query: 243 TCYGSKILRNF 253
T G KIL NF
Sbjct: 181 TSLGYKILYNF 191
|
| >d1a9xb2 c.23.16.1 (B:1653-1880) Carbamoyl phosphate synthetase, small subunit C-terminal domain {Escherichia coli [TaxId: 562]} Length = 228 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: Class I glutamine amidotransferases (GAT) domain: Carbamoyl phosphate synthetase, small subunit C-terminal domain species: Escherichia coli [TaxId: 562]
Score = 81.8 bits (201), Expect = 1e-18
Identities = 47/258 (18%), Positives = 77/258 (29%), Gaps = 72/258 (27%)
Query: 6 RTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPG 65
+ D NI + L + + + D+ + D I +S GPG
Sbjct: 41 HVVAYDF--GAKRNILRMLVDRGCRL--TIVPAQTSAEDV-----LKMNPDGIFLSNGPG 91
Query: 66 SPACPEDIGICLRVLLECWDVPILGVCLGHQALGFVHGADIVHAPEPVHGRLSEIVHNGD 125
PA + ++ LE D+P+ G+CLGHQ L GA V HG +
Sbjct: 92 DPAPCDYAITAIQKFLE-TDIPVFGICLGHQLLALASGAKTVKMKFGHHGGNHPVKDVEK 150
Query: 126 RLFHDIPSGQNSGFKVVRYHSLIIDADSLPKELIPIAWSNSADGFSYLGTLQSGEIPDAY 185
+ + H +D +LP L S
Sbjct: 151 NVV----------MITAQNHGFAVDEATLPANLRVTHKS--------------------- 179
Query: 186 QSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGIMHSTRPHYGVQFHPESIATCY 245
+ L GI + +P + Q +PE+ +
Sbjct: 180 ------------------------------LFDGTLQGIHRTDKPAFSFQGNPEASPGPH 209
Query: 246 -GSKILRNFREITEDYWK 262
+ + +F E+ E Y K
Sbjct: 210 DAAPLFDHFIELIEQYRK 227
|
| >d1i7qb_ c.23.16.1 (B:) Anthranilate synthase GAT subunit, TrpG {Serratia marcescens [TaxId: 615]} Length = 192 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: Class I glutamine amidotransferases (GAT) domain: Anthranilate synthase GAT subunit, TrpG species: Serratia marcescens [TaxId: 615]
Score = 77.2 bits (189), Expect = 3e-17
Identities = 39/138 (28%), Positives = 61/138 (44%), Gaps = 5/138 (3%)
Query: 8 LLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSP 67
LL+DN DS+TYN+ +L G V+ RN I R + V+ PG
Sbjct: 4 LLLDNVDSFTYNLVDQLRAS-GHQVVIYRNQIGAEVIIERLQ----HMEQPVLMLSPGPG 58
Query: 68 ACPEDIGICLRVLLECWDVPILGVCLGHQALGFVHGADIVHAPEPVHGRLSEIVHNGDRL 127
E + + +PI+G+CLGHQA+ +G + A E +HG+ S I H+G+ +
Sbjct: 59 TPSEAGCMPELLQRLRGQLPIIGICLGHQAIVEAYGGQVGQAGEILHGKASAIAHDGEGM 118
Query: 128 FHDIPSGQNSGFKVVRYH 145
F + +
Sbjct: 119 FAGMANPLPVARYHSLVG 136
|
| >d1i7qb_ c.23.16.1 (B:) Anthranilate synthase GAT subunit, TrpG {Serratia marcescens [TaxId: 615]} Length = 192 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: Class I glutamine amidotransferases (GAT) domain: Anthranilate synthase GAT subunit, TrpG species: Serratia marcescens [TaxId: 615]
Score = 60.3 bits (145), Expect = 2e-11
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 219 EVLMGIMHSTRPHYGVQFHPESIATCYGSKILRNF 253
E++M + R G QFHPESI T +G+++L
Sbjct: 151 EMVMAVRDDRRRVCGFQFHPESILTTHGARLLEQT 185
|
| >d2a9va1 c.23.16.1 (A:1-196) GMP synthase subunit A, GuaAA {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 196 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: Class I glutamine amidotransferases (GAT) domain: GMP synthase subunit A, GuaAA species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 74.9 bits (183), Expect = 2e-16
Identities = 44/258 (17%), Positives = 72/258 (27%), Gaps = 67/258 (25%)
Query: 5 VRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGP 64
++ ++DN +T+ ++ L + GV +V ND + E + D +V+S G
Sbjct: 2 LKIYVVDNGGQWTHREWRVLREL-GVDTKIVPNDIDSS--------ELDGLDGLVLSGGA 52
Query: 65 GSPACPEDIGICLRVLLECWDVPILGVCLGHQALGFVHGADIVHAPEPVHGRLSEIVHNG 124
+ + H + + H
Sbjct: 53 PNIDEEL-----------DKLGSVGKYIDDHNYPILGICVGAQFIALHFGASVVKAKHPE 101
Query: 125 DRLFHDIPSGQNSGFKVVRYHSLIIDADSLPKELIPIAWSNSADGFSYLGTLQSGEIPDA 184
+ F LP E+
Sbjct: 102 FGKTKVSVMHSENIFG------------GLPSEI------------------------TV 125
Query: 185 YQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGIMHSTRPHYGVQFHPESIATC 244
+++ + + I L D T + + G H TRP Y QFHPE T
Sbjct: 126 WENHNDEIINLPDDFTLAASSATCQV-----------QGFYHKTRPIYATQFHPEVEHTQ 174
Query: 245 YGSKILRNFREITEDYWK 262
YG I RNF I Y +
Sbjct: 175 YGRDIFRNFIGICASYRE 192
|
| >d1gpma2 c.23.16.1 (A:3-207) GMP synthetase {Escherichia coli [TaxId: 562]} Length = 205 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: Class I glutamine amidotransferases (GAT) domain: GMP synthetase species: Escherichia coli [TaxId: 562]
Score = 68.8 bits (167), Expect = 3e-14
Identities = 44/248 (17%), Positives = 69/248 (27%), Gaps = 59/248 (23%)
Query: 6 RTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPG 65
R L++D YT + + + + GV + D T I + I++S GP
Sbjct: 7 RILILDFGSQYTQLVARRVREL-GVYCELWAWDV-TEAQIRDF-----NPSGIILSGGPE 59
Query: 66 SPACPEDIGICLRVLLECWDVPILGVCLGHQALGFVHGADIVHAPEPVHGRLSEIVHNGD 125
S V VP+ GVC G Q + G + + E G V N
Sbjct: 60 STTEENSPRAPQYVF--EAGVPVFGVCYGMQTMAMQLGGHVEASNEREFGYAQVEVVNDS 117
Query: 126 RLFHDIPSGQNSGFKVVRYHSLIIDADSLPKELIPIAWSNSADGFSYLGTLQSGEIPDAY 185
L I + K + + I +++
Sbjct: 118 ALVRGIEDALTADGKPLLDVWMSHGDKVTAIPSDFITVASTES----------------- 160
Query: 186 QSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGIMHSTRPHYGVQFHPESIATCY 245
+ + + YGVQFHPE T
Sbjct: 161 ---------------------------------CPFAIMANEEKRFYGVQFHPEVTHTRQ 187
Query: 246 GSKILRNF 253
G ++L F
Sbjct: 188 GMRMLERF 195
|
| >d1l9xa_ c.23.16.1 (A:) gamma-glutamyl hydrolase {Human (Homo sapiens) [TaxId: 9606]} Length = 288 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: Class I glutamine amidotransferases (GAT) domain: gamma-glutamyl hydrolase species: Human (Homo sapiens) [TaxId: 9606]
Score = 69.2 bits (168), Expect = 7e-14
Identities = 43/283 (15%), Positives = 76/283 (26%), Gaps = 50/283 (17%)
Query: 3 EFVRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISP 62
+ ++ + Y Y + G V VR D T +D N + P
Sbjct: 12 KCRNKVMKNYGRYYIAASYVKYLESAGARVVPVRLDL-TEKDYEILFKSINGI----LFP 66
Query: 63 GPGSPACPEDIGICLRVLLEC--------WDVPILGVCLGHQALGFVHGADIVHAPEPVH 114
G D ++ P+ G CLG + L + + +
Sbjct: 67 GGSVDLRRSDYAKVAKIFYNLSIQSFDDGDYFPVWGTCLGFEELSLLISGECLLTATDTV 126
Query: 115 GRLSEIVHNGDRLFHDIPSGQNSGFKVVRYHSLIIDADSLPKELIPIAWSNSADGFSYLG 174
+ G +L + + SL E P+ + S
Sbjct: 127 DVAMPLNFTGGQLHSRMFQNFPTELL-----------LSLAVE--PLTANFHKWSLSVKN 173
Query: 175 TLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGIMHSTRPHYGV 234
+ ++ + + T +G E + + P YGV
Sbjct: 174 FTMNEKLKKFFN-----------VLTTNTDGKI-----------EFISTMEGYKYPVYGV 211
Query: 235 QFHPESIATCYGSKILRNFREITEDYWKRLRSPFVKE--RNVH 275
Q+HPE + + + L FV E +N H
Sbjct: 212 QWHPEKAPYEWKNLDGISHAPNAVKTAFYLAEFFVNEARKNNH 254
|
| >d1k9vf_ c.23.16.1 (F:) GAT subunit, HisH, (or domain) of imidazoleglycerolphosphate synthase HisF {Thermotoga maritima [TaxId: 2336]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: Class I glutamine amidotransferases (GAT) domain: GAT subunit, HisH, (or domain) of imidazoleglycerolphosphate synthase HisF species: Thermotoga maritima [TaxId: 2336]
Score = 36.1 bits (82), Expect = 0.003
Identities = 10/26 (38%), Positives = 13/26 (50%), Gaps = 1/26 (3%)
Query: 232 YGVQFHPESIATCYGSKILRNFREIT 257
G QFHPE + G K+L E +
Sbjct: 173 LGFQFHPEKSSK-IGRKLLEKVIECS 197
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 392 | |||
| d1i7qb_ | 192 | Anthranilate synthase GAT subunit, TrpG {Serratia | 100.0 | |
| d1qdlb_ | 195 | Anthranilate synthase GAT subunit, TrpG {Archaeon | 100.0 | |
| d1wl8a1 | 188 | GMP synthase subunit A, GuaAA {Archaeon Pyrococcus | 100.0 | |
| d2a9va1 | 196 | GMP synthase subunit A, GuaAA {Archaeon Thermoplas | 100.0 | |
| d1a9xb2 | 228 | Carbamoyl phosphate synthetase, small subunit C-te | 100.0 | |
| d1gpma2 | 205 | GMP synthetase {Escherichia coli [TaxId: 562]} | 100.0 | |
| d1o1ya_ | 230 | Hypothetical protein TM1158 {Thermotoga maritima [ | 99.95 | |
| d1k9vf_ | 200 | GAT subunit, HisH, (or domain) of imidazoleglycero | 99.92 | |
| d1ka9h_ | 195 | GAT subunit, HisH, (or domain) of imidazoleglycero | 99.91 | |
| d2nv0a1 | 195 | Hypothetical protein YaaE {Bacillus subtilis [TaxI | 99.9 | |
| d1jvna2 | 232 | GAT subunit, HisH, (or domain) of imidazoleglycero | 99.89 | |
| d1q7ra_ | 202 | Hypothetical protein YaaE {Bacillus stearothermoph | 99.88 | |
| d1l9xa_ | 288 | gamma-glutamyl hydrolase {Human (Homo sapiens) [Ta | 99.87 | |
| d2abwa1 | 218 | Pyridoxine biosynthesis protein 2, Pdx2 {Malaria p | 99.82 | |
| d1vcoa1 | 250 | CTP synthase PyrG, C-terminal domain {Thermus ther | 99.78 | |
| d1s1ma1 | 258 | CTP synthase PyrG, C-terminal domain {Escherichia | 99.76 | |
| d2ghra1 | 281 | Homoserine O-succinyltransferase HTS (MetA) {Bacil | 99.6 | |
| d1t3ta2 | 262 | FGAM synthase PurL, amidotransferase domain {Salmo | 99.11 | |
| d1vhqa_ | 217 | Putative sigma cross-reacting protein 27A (SCRP-27 | 96.95 | |
| d1g2ia_ | 166 | Intracellular protease {Archaeon Pyrococcus horiko | 96.41 | |
| d1sy7a1 | 184 | Catalase, C-terminal domain {Neurospora crassa [Ta | 96.34 | |
| d1p5fa_ | 186 | DJ-1 {Human (Homo sapiens) [TaxId: 9606]} | 96.07 | |
| d1u9ca_ | 221 | GK2698 ortholog {Bacillus stearothermophilus [TaxI | 96.04 | |
| d1oi4a1 | 170 | Hypothetical protein YhbO {Escherichia coli [TaxId | 95.78 | |
| d2fexa1 | 188 | Hypothetical protein Atu0886 {Agrobacterium tumefa | 95.57 | |
| d1p80a1 | 156 | Catalase, C-terminal domain {Escherichia coli, HPI | 95.15 | |
| d1ycga1 | 149 | Nitric oxide reductase C-terminal domain {Moorella | 93.49 | |
| d1qvwa_ | 236 | Hypothetical protein Ydr533Cp {Baker's yeast (Sacc | 92.84 | |
| d2ab0a1 | 195 | Protein ThiJ (YajL) {Escherichia coli [TaxId: 562] | 92.38 | |
| d2pl1a1 | 119 | PhoP receiver domain {Escherichia coli [TaxId: 562 | 92.24 | |
| d1z0sa1 | 249 | Inorganic polyphosphate/ATP-NAD kinase PpnK {Archa | 91.1 | |
| d1ny5a1 | 137 | Transcriptional activator sigm54 (NtrC1), N-termin | 90.88 | |
| d1kgsa2 | 122 | PhoB receiver domain {Thermotoga maritima [TaxId: | 90.68 | |
| d1n57a_ | 279 | HSP31 (HchA; YedU) {Escherichia coli [TaxId: 562]} | 90.53 | |
| d1ys7a2 | 121 | Transcriptional regulatory protein PrrA, N-termina | 89.81 | |
| d2b4aa1 | 118 | Hypothetical protein BH3024 {Bacillus halodurans [ | 88.72 | |
| d1xhfa1 | 121 | Aerobic respiration control protein ArcA, N-termin | 88.2 | |
| d1krwa_ | 123 | NTRC receiver domain {Salmonella typhimurium [TaxI | 86.91 | |
| d1zgza1 | 120 | TorCAD operon transcriptional regulator TorD, N-te | 86.91 | |
| d2a9pa1 | 117 | DNA-binding response regulator MicA, N-terminal do | 86.83 | |
| d1ydga_ | 201 | Trp repressor binding protein WrbA {Deinococcus ra | 86.19 | |
| d2ayxa1 | 133 | Sensor kinase protein RcsC, C-terminal domain {Esc | 84.89 | |
| d1sc6a2 | 132 | Phosphoglycerate dehydrogenase {Escherichia coli [ | 84.7 | |
| d1w25a1 | 139 | Response regulator PleD, receiver domain {Caulobac | 84.39 | |
| d1zesa1 | 121 | PhoB receiver domain {Escherichia coli [TaxId: 562 | 83.01 | |
| d1mvoa_ | 121 | PhoP receiver domain {Bacillus subtilis [TaxId: 14 | 82.62 | |
| d1mb3a_ | 123 | Cell division response regulator DivK {Caulobacter | 80.16 |
| >d1i7qb_ c.23.16.1 (B:) Anthranilate synthase GAT subunit, TrpG {Serratia marcescens [TaxId: 615]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: Class I glutamine amidotransferases (GAT) domain: Anthranilate synthase GAT subunit, TrpG species: Serratia marcescens [TaxId: 615]
Probab=100.00 E-value=1.3e-44 Score=329.40 Aligned_cols=189 Identities=34% Similarity=0.546 Sum_probs=164.9
Q ss_pred EEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHHcCC
Q 046651 6 RTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLECWD 85 (392)
Q Consensus 6 r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~~~~ 85 (392)
.||||||||||||||+++|++ .|.+++|+++|.. .+.....+ +..++|+|++|||||+|....+.....+.+ ..+
T Consensus 2 niliiD~~DSFt~ni~~~l~~-lG~~~~v~~~~~~-~~~~~~~l-~~~~~~~iils~Gpg~~~~~~~~~~i~~~l--~~~ 76 (192)
T d1i7qb_ 2 DILLLDNVDSFTYNLVDQLRA-SGHQVVIYRNQIG-AEVIIERL-QHMEQPVLMLSPGPGTPSEAGCMPELLQRL--RGQ 76 (192)
T ss_dssp EEEEEECSCSSHHHHHHHHHH-TTCEEEEEETTSC-HHHHHHHH-HHCSSEEEEECCCSSCGGGSTTHHHHHHHH--BTT
T ss_pred cEEEEECCCcHHHHHHHHHHH-CCCeEEEEeCCCc-ccccHHHH-HhcCCCeEEecCccccccccccchhhHHhh--hcC
Confidence 589999999999999999998 7999999999876 33222222 125789999999999998766654444443 349
Q ss_pred CCEEEEcHHHHHHHHHhCCeeeecCCCceeceeEEEecCCcccccCCCCCCcceEEEeeecceeecCCCCCCcEEEEEec
Q 046651 86 VPILGVCLGHQALGFVHGADIVHAPEPVHGRLSEIVHNGDRLFHDIPSGQNSGFKVVRYHSLIIDADSLPKELIPIAWSN 165 (392)
Q Consensus 86 iPILGVCLGhQ~La~a~Gg~V~~apep~hG~~s~i~h~g~~LF~~ips~~~s~f~VvryHSl~V~~~sLP~~l~~iAwt~ 165 (392)
+||||||+|||+|+.++|++|.+.+.+.+|+...+.+.++.+|.+.+.. +.+.++|++.++. +|+.++.+|+++
T Consensus 77 iPiLGIClG~Q~la~~~Gg~v~~~~~~~~g~~~~~~~~~~~l~~~~~~~----~~~~~~h~~~~~~--~~~~~~~~a~~~ 150 (192)
T d1i7qb_ 77 LPIIGICLGHQAIVEAYGGQVGQAGEILHGKASAIAHDGEGMFAGMANP----LPVARYHSLVGSN--IPADLTVNARFG 150 (192)
T ss_dssp BCEEEETHHHHHHHHHTTCEEEEEEEEEEEEEEEEEECCCGGGTTCCSS----EEEEEEEEEEEES--CCTTSEEEEEET
T ss_pred ccEEeeeHHHHHHHHHCCCeEEECCcccccceEEEeecCCCceeecccc----ceEEeeccccccc--ccceeeeecCCC
Confidence 9999999999999999999999999999999999999999999999988 9999999999988 999999999875
Q ss_pred CCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCcccccccccCCcceEEEEEecCCCEEEEeccCCCCCCch
Q 046651 166 SADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGIMHSTRPHYGVQFHPESIATCY 245 (392)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vmgi~h~~~P~~GVQFHPEsiat~~ 245 (392)
. .+||++|.++|+||||||||++.|++
T Consensus 151 ~-----------------------------------------------------~i~ai~~~~~~i~GvQFHPEs~~t~~ 177 (192)
T d1i7qb_ 151 E-----------------------------------------------------MVMAVRDDRRRVCGFQFHPESILTTH 177 (192)
T ss_dssp T-----------------------------------------------------EEEEEEETTTTEEEESSCTTSTTSTT
T ss_pred C-----------------------------------------------------eeEEEEECCCCEEEEEeCCCcCCCCC
Confidence 4 79999999999999999999999999
Q ss_pred hHHHHHHHHHHHH
Q 046651 246 GSKILRNFREITE 258 (392)
Q Consensus 246 G~~I~~NF~~l~~ 258 (392)
|.+||+||+.++.
T Consensus 178 G~~il~nFl~~~~ 190 (192)
T d1i7qb_ 178 GARLLEQTLAWAL 190 (192)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHh
Confidence 9999999998764
|
| >d1qdlb_ c.23.16.1 (B:) Anthranilate synthase GAT subunit, TrpG {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: Class I glutamine amidotransferases (GAT) domain: Anthranilate synthase GAT subunit, TrpG species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=1.9e-43 Score=319.97 Aligned_cols=188 Identities=47% Similarity=0.748 Sum_probs=161.7
Q ss_pred EEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHH-cC
Q 046651 6 RTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLE-CW 84 (392)
Q Consensus 6 r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~-~~ 84 (392)
|||||||||||||||+++|++ .|++++|+++|+.+.+++.. ..+|+||+|||||+|....+.+....+.+. ..
T Consensus 3 ~~liiD~~dsft~Ni~~~l~~-lG~~~~vi~~d~~~~~~i~~-----~~~~gvilsgGp~~~~~~~~~~~~~~i~~~~~~ 76 (195)
T d1qdlb_ 3 LTLIIDNYDSFVYNIAQIVGE-LGSYPIVIRNDEISIKGIER-----IDPDRLIISPGPGTPEKREDIGVSLDVIKYLGK 76 (195)
T ss_dssp EEEEEECSCSSHHHHHHHHHH-TTCEEEEEETTTSCHHHHHH-----HCCSEEEECCCSSCTTSHHHHTTHHHHHHHHTT
T ss_pred EEEEEECCCchHHHHHHHHHh-CCCeEEEEeCCCCCHHHHHh-----hCCCccccCCCCCccccccccccchhhhhhhcC
Confidence 799999999999999999998 79999999999988898876 458999999999999876655544444333 35
Q ss_pred CCCEEEEcHHHHHHHHHhCCeeeecCCCceeceeEEEe---cCCcccccCCCCCCcceEEEeeecceeecCCCCCCcEEE
Q 046651 85 DVPILGVCLGHQALGFVHGADIVHAPEPVHGRLSEIVH---NGDRLFHDIPSGQNSGFKVVRYHSLIIDADSLPKELIPI 161 (392)
Q Consensus 85 ~iPILGVCLGhQ~La~a~Gg~V~~apep~hG~~s~i~h---~g~~LF~~ips~~~s~f~VvryHSl~V~~~sLP~~l~~i 161 (392)
++||||||||||+|+.++|++|.+.+.+.+|....+.. ....+|++++.. +++.+||++.+.. +|+....+
T Consensus 77 ~~PiLGIClG~Qll~~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~lf~~~~~~----~~~~~~h~~~~~~--~~~~~~~~ 150 (195)
T d1qdlb_ 77 RTPILGVCLGHQAIGYAFGAKIRRARKVFHGKISNIILVNNSPLSLYYGIAKE----FKATRYHSLVVDE--VHRPLIVD 150 (195)
T ss_dssp TSCEEEETHHHHHHHHHTTCEEEEEEEEEEEEEEEEEECCSSCCSTTTTCCSE----EEEEEEEEEEEEC--CCTTEEEE
T ss_pred CCCEEEeehhhhhhhhccCCEEEeecccccccccccccccccccccccCCCcc----ceeeecceeeeec--cccCcccc
Confidence 89999999999999999999999999888988776654 345799999988 9999999999987 77777777
Q ss_pred EEecCCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCcccccccccCCcceEEEEEecCCCEEEEeccCCCC
Q 046651 162 AWSNSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGIMHSTRPHYGVQFHPESI 241 (392)
Q Consensus 162 Awt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vmgi~h~~~P~~GVQFHPEsi 241 (392)
+.+... + .+||++|.++|+||||||||+.
T Consensus 151 ~~~~~~-------------~--------------------------------------~i~ai~~~~~~i~GvQFHPE~~ 179 (195)
T d1qdlb_ 151 AISAED-------------N--------------------------------------EIMAIHHEEYPIYGVQFHPESV 179 (195)
T ss_dssp EEESSS-------------C--------------------------------------CEEEEEESSSSEEEESSBTTST
T ss_pred eeccCC-------------C--------------------------------------cEEEEEECCCCEEEEEcCCCCC
Confidence 655431 3 8999999999999999999999
Q ss_pred CCchhHHHHHHHHHH
Q 046651 242 ATCYGSKILRNFREI 256 (392)
Q Consensus 242 at~~G~~I~~NF~~l 256 (392)
.|++|.+||+||++.
T Consensus 180 ~s~~G~~il~nFl~~ 194 (195)
T d1qdlb_ 180 GTSLGYKILYNFLNR 194 (195)
T ss_dssp TCTTHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHhh
Confidence 999999999999863
|
| >d2a9va1 c.23.16.1 (A:1-196) GMP synthase subunit A, GuaAA {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: Class I glutamine amidotransferases (GAT) domain: GMP synthase subunit A, GuaAA species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=100.00 E-value=6.3e-42 Score=311.53 Aligned_cols=192 Identities=31% Similarity=0.483 Sum_probs=167.8
Q ss_pred ccEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCch-hHHHHHHHH
Q 046651 4 FVRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDI-GICLRVLLE 82 (392)
Q Consensus 4 ~~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~-gi~~~ll~~ 82 (392)
.||||||||+++||++|.+.|++ .|++++|+++|.. .+++ ..+|+|||||||+++....+. ....+.+.+
T Consensus 1 m~ki~iiD~g~~~~~~i~r~l~~-lg~~~~i~~~d~~-~~~~-------~~~dgiIl~Gg~~~~~~~~~~~~~l~~~~~~ 71 (196)
T d2a9va1 1 MLKIYVVDNGGQWTHREWRVLRE-LGVDTKIVPNDID-SSEL-------DGLDGLVLSGGAPNIDEELDKLGSVGKYIDD 71 (196)
T ss_dssp CCBEEEEEESCCTTCHHHHHHHH-TTCBCCEEETTSC-GGGG-------TTCSEEEEEEECSCGGGTGGGHHHHHHHHHH
T ss_pred CCEEEEEECCCcHHHHHHHHHHH-CCCeEEEEeCCCC-HHHH-------hcCCcEEEeccccccccccchhhhHHHHHhh
Confidence 37999999999999999999998 7999999999864 5554 569999999999987754432 223333333
Q ss_pred cCCCCEEEEcHHHHHHHHHhCCeeeecCCCceeceeEEEecCCcccccCCCCCCcceEEEeeecceeecCCCCCCcEEEE
Q 046651 83 CWDVPILGVCLGHQALGFVHGADIVHAPEPVHGRLSEIVHNGDRLFHDIPSGQNSGFKVVRYHSLIIDADSLPKELIPIA 162 (392)
Q Consensus 83 ~~~iPILGVCLGhQ~La~a~Gg~V~~apep~hG~~s~i~h~g~~LF~~ips~~~s~f~VvryHSl~V~~~sLP~~l~~iA 162 (392)
.++||||||+|||+|+.++||++...+.+.++......+..+++|++++.. +.+.++|++.|.. +|++++++|
T Consensus 72 -~~~PilGIC~G~Qll~~~~gg~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~~H~~~v~~--~~~~~~v~a 144 (196)
T d2a9va1 72 -HNYPILGICVGAQFIALHFGASVVKAKHPEFGKTKVSVMHSENIFGGLPSE----ITVWENHNDEIIN--LPDDFTLAA 144 (196)
T ss_dssp -CCSCEEEETHHHHHHHHHTTCEEEEEEEEEEEEEEEEESCCCGGGTTCCSE----EEEEEEEEEEEES--CCTTEEEEE
T ss_pred -cCceEEEeehhhhhhhhccccccccccccccccceEEEecCCccccCCCCc----eEEEecceeEEEe--CCCccceee
Confidence 499999999999999999999999999888888777777889999999988 9999999999987 999999999
Q ss_pred EecCCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCcccccccccCCcceEEEEEecCCCEEEEeccCCCCC
Q 046651 163 WSNSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGIMHSTRPHYGVQFHPESIA 242 (392)
Q Consensus 163 wt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vmgi~h~~~P~~GVQFHPEsia 242 (392)
.+++ + .+||++|.++|+||||||||+..
T Consensus 145 ~~~~--------------~--------------------------------------~v~ai~~~~~~i~gvQfHPE~~~ 172 (196)
T d2a9va1 145 SSAT--------------C--------------------------------------QVQGFYHKTRPIYATQFHPEVEH 172 (196)
T ss_dssp ECSS--------------C--------------------------------------SCSEEEESSSSEEEESSCTTSTT
T ss_pred cccc--------------c--------------------------------------chheEEECCCCEEEEEeCcccCC
Confidence 9877 6 78999999999999999999999
Q ss_pred CchhHHHHHHHHHHHHHhhhh
Q 046651 243 TCYGSKILRNFREITEDYWKR 263 (392)
Q Consensus 243 t~~G~~I~~NF~~l~~~~~~~ 263 (392)
|++|++||+||+++|.++++.
T Consensus 173 s~~G~~il~~F~~~~~~~~~~ 193 (196)
T d2a9va1 173 TQYGRDIFRNFIGICASYREI 193 (196)
T ss_dssp STTHHHHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHHHHh
Confidence 999999999999999988654
|
| >d1a9xb2 c.23.16.1 (B:1653-1880) Carbamoyl phosphate synthetase, small subunit C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: Class I glutamine amidotransferases (GAT) domain: Carbamoyl phosphate synthetase, small subunit C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.8e-38 Score=296.18 Aligned_cols=186 Identities=25% Similarity=0.380 Sum_probs=158.8
Q ss_pred ccEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHH-
Q 046651 4 FVRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLE- 82 (392)
Q Consensus 4 ~~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~- 82 (392)
..||+|||. +-.||+.+.|++ .|+.++|++++. +++++.. ..+|+||||||||+|... +.+.+++++
T Consensus 39 ~~~i~~~D~--G~k~~ilr~l~~-~~~~~~v~p~~~-~~~~i~~-----~~pdgivlS~GPg~P~~~---~~~~~~~~~~ 106 (228)
T d1a9xb2 39 PFHVVAYDF--GAKRNILRMLVD-RGCRLTIVPAQT-SAEDVLK-----MNPDGIFLSNGPGDPAPC---DYAITAIQKF 106 (228)
T ss_dssp CEEEEEEES--SCCHHHHHHHHH-TTEEEEEEETTC-CHHHHHT-----TCCSEEEECCCSBCSTTC---HHHHHHHHHH
T ss_pred cceEEEEeC--CCcHHhHhHHHh-cCceEEEcCCCC-CHHHHHh-----cCCCEEEEeCCCCccccc---hhHHHHHHHH
Confidence 368999998 456779999998 899999999997 4888877 689999999999999754 334455544
Q ss_pred -cCCCCEEEEcHHHHHHHHHhCCeeeecCCCceeceeEEEecCCcccccCCCCCCcceEEEeeecceeecCCCCCCcEEE
Q 046651 83 -CWDVPILGVCLGHQALGFVHGADIVHAPEPVHGRLSEIVHNGDRLFHDIPSGQNSGFKVVRYHSLIIDADSLPKELIPI 161 (392)
Q Consensus 83 -~~~iPILGVCLGhQ~La~a~Gg~V~~apep~hG~~s~i~h~g~~LF~~ips~~~s~f~VvryHSl~V~~~sLP~~l~~i 161 (392)
..++||||||+|||+|+.++||+|.+++.++||....+.+....++ +...++|++.+...+++..+.++
T Consensus 107 ~~~~iPILGIClG~Qlia~~~Gg~v~k~~~~~~G~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~v~ 176 (228)
T d1a9xb2 107 LETDIPVFGICLGHQLLALASGAKTVKMKFGHHGGNHPVKDVEKNVV----------MITAQNHGFAVDEATLPANLRVT 176 (228)
T ss_dssp TTSCCCEEEETHHHHHHHHHTTCCEEEEEEEEEEEEEEEEETTTTEE----------EEEEEEEEEEECSTTCCTTEEEE
T ss_pred HhCCCCEEEEEcChHHHHHHcCCceeeccccccccccccccccccee----------eeecccccceecccccccceEEE
Confidence 2499999999999999999999999999999999988877665554 56778999999988899999888
Q ss_pred EEecCCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCcccccccccCCcceEEEEEecCCCEEEEeccCCCC
Q 046651 162 AWSNSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGIMHSTRPHYGVQFHPESI 241 (392)
Q Consensus 162 Awt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vmgi~h~~~P~~GVQFHPEsi 241 (392)
+.+.+. + .+|||+|.++|+||||||||++
T Consensus 177 ~~s~~d-------------~--------------------------------------~i~ai~h~~~~i~gVQFHPE~~ 205 (228)
T d1a9xb2 177 HKSLFD-------------G--------------------------------------TLQGIHRTDKPAFSFQGNPEAS 205 (228)
T ss_dssp EEETTT-------------C--------------------------------------CEEEEEESSSSEEEESSCTTCS
T ss_pred EEecCC-------------C--------------------------------------cEEEEEECCCCEEEEeCCCCCC
Confidence 777431 4 8999999999999999999999
Q ss_pred CCch-hHHHHHHHHHHHHHhhh
Q 046651 242 ATCY-GSKILRNFREITEDYWK 262 (392)
Q Consensus 242 at~~-G~~I~~NF~~l~~~~~~ 262 (392)
.|++ |..||+||++++.++.+
T Consensus 206 ~t~~dg~~l~~nFl~~i~~~kk 227 (228)
T d1a9xb2 206 PGPHDAAPLFDHFIELIEQYRK 227 (228)
T ss_dssp SSCSTTTHHHHHHHHHHHHHHH
T ss_pred CCcccHHHHHHHHHHHHHHHhC
Confidence 9876 99999999999987643
|
| >d1gpma2 c.23.16.1 (A:3-207) GMP synthetase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: Class I glutamine amidotransferases (GAT) domain: GMP synthetase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1e-36 Score=277.48 Aligned_cols=189 Identities=26% Similarity=0.313 Sum_probs=159.0
Q ss_pred ccEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHHc
Q 046651 4 FVRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLEC 83 (392)
Q Consensus 4 ~~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~~ 83 (392)
.-||+|||++++|+.+|.+.|++ +|+..+|+++|. +.+++.. ..+|+||+|||||+|.+.........++ .
T Consensus 5 ~~kI~IiD~G~~~~~~I~r~lr~-lg~~~~I~~~d~-~~~~~~~-----~~~~giils~gp~~~~~~~~~~~~~~~~--~ 75 (205)
T d1gpma2 5 KHRILILDFGSQYTQLVARRVRE-LGVYCELWAWDV-TEAQIRD-----FNPSGIILSGGPESTTEENSPRAPQYVF--E 75 (205)
T ss_dssp SSEEEEEECSCTTHHHHHHHHHH-TTCEEEEEESCC-CHHHHHH-----HCCSEEEECCCSSCTTSTTCCCCCGGGG--T
T ss_pred cCeEEEEECCchHHHHHHHHHHH-CCCEEEEECCCC-CHHHHhh-----cCCCeEEecCCCCccchhhhhhHHHHHH--h
Confidence 35899999999999999999998 799999999986 4777766 4589999999999998765544333332 2
Q ss_pred CCCCEEEEcHHHHHHHHHhCCeeeecCCCceeceeEEEecCCcccccCCCCC----CcceEEEeeecceeecCCCCCCcE
Q 046651 84 WDVPILGVCLGHQALGFVHGADIVHAPEPVHGRLSEIVHNGDRLFHDIPSGQ----NSGFKVVRYHSLIIDADSLPKELI 159 (392)
Q Consensus 84 ~~iPILGVCLGhQ~La~a~Gg~V~~apep~hG~~s~i~h~g~~LF~~ips~~----~s~f~VvryHSl~V~~~sLP~~l~ 159 (392)
.++||||||||||+|+.++||++.+++.++||+...+.+....++.+++... ...+.++.+|++.+.. +|+...
T Consensus 76 ~~~PiLGIClG~Qlla~~~Gg~v~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~--~~~~~~ 153 (205)
T d1gpma2 76 AGVPVFGVCYGMQTMAMQLGGHVEASNEREFGYAQVEVVNDSALVRGIEDALTADGKPLLDVWMSHGDKVTA--IPSDFI 153 (205)
T ss_dssp SSSCEEEETHHHHHHHHHHTCEEECCSSCEEEEEEEEECSCCTTTTTCCSEECTTSCEEEEEEEEECSEEEE--CCTTCE
T ss_pred CCCCEEEeccchhhhhhhcCCccccccccccCcceeccccccccccccccccccCCccceeeeccccccccc--ccccce
Confidence 4999999999999999999999999999999999888888888887776531 1235778899998887 888888
Q ss_pred EEEEecCCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCcccccccccCCcceEEEEEecCCCEEEEeccCC
Q 046651 160 PIAWSNSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGIMHSTRPHYGVQFHPE 239 (392)
Q Consensus 160 ~iAwt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vmgi~h~~~P~~GVQFHPE 239 (392)
.++.+.+ + .++++.|.++|+||||||||
T Consensus 154 ~~~~~~~--------------~--------------------------------------~~~~~~~~~~ni~gvQFHPE 181 (205)
T d1gpma2 154 TVASTES--------------C--------------------------------------PFAIMANEEKRFYGVQFHPE 181 (205)
T ss_dssp EEEECSS--------------C--------------------------------------SCSEEEETTTTEEEESBCTT
T ss_pred eeeccCC--------------C--------------------------------------ceEEEEeCCCCEEEEEeecc
Confidence 8887766 4 67788899999999999999
Q ss_pred CCCCchhHHHHHHHHH
Q 046651 240 SIATCYGSKILRNFRE 255 (392)
Q Consensus 240 siat~~G~~I~~NF~~ 255 (392)
++.|++|.+||+||++
T Consensus 182 ~s~s~~G~~il~nFl~ 197 (205)
T d1gpma2 182 VTHTRQGMRMLERFVR 197 (205)
T ss_dssp STTSTTHHHHHHHHHH
T ss_pred cCCCccHHHHHHHHHH
Confidence 9889999999999985
|
| >d1o1ya_ c.23.16.1 (A:) Hypothetical protein TM1158 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: Class I glutamine amidotransferases (GAT) domain: Hypothetical protein TM1158 species: Thermotoga maritima [TaxId: 2336]
Probab=99.95 E-value=6.6e-28 Score=224.67 Aligned_cols=183 Identities=21% Similarity=0.293 Sum_probs=139.7
Q ss_pred ccEEEEEECCCCc-hHHHHHHHHHhCCCCeEEEeCCCCC--HHHHHhhhcccCCcCEEEECCCCCCCCCCCch---hHHH
Q 046651 4 FVRTLLIDNYDSY-TYNIYQELSTINGVPPVVVRNDEWT--WRDICRYLYEENAFDNIVISPGPGSPACPEDI---GICL 77 (392)
Q Consensus 4 ~~r~LlIDnyDSy-T~nl~q~L~~v~G~~pvVV~nd~~~--~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~---gi~~ 77 (392)
-||+|+|.+.+.- ...+.+.|.+ .|.++.+++....+ .+++ ..||+|||+|||++++..... ....
T Consensus 3 ~mrvli~qh~~~e~~G~~~~~l~~-~g~~~~~~~~~~~~~~p~~l-------~~~d~iii~Ggp~~~~d~~~~~~~~~~~ 74 (230)
T d1o1ya_ 3 HVRVLAIRHVEIEDLGMMEDIFRE-KNWSFDYLDTPKGEKLERPL-------EEYSLVVLLGGYMGAYEEEKYPFLKYEF 74 (230)
T ss_dssp CCEEEEECSSTTSSCTHHHHHHHH-TTCEEEEECGGGTCCCSSCG-------GGCSEEEECCCSCCTTCTTTCTHHHHHH
T ss_pred ceEEEEEECCCCCCcHHHHHHHHH-CCCEEEEEECCCCCcCCcch-------hhCCEEEEcCCCcccccchhhhhhHHHH
Confidence 4999999887653 3457777777 79999888654321 1222 459999999999999876543 2234
Q ss_pred HHHHH--cCCCCEEEEcHHHHHHHHHhCCeeeecCCCc-eeceeEEEecCCcccccCCCCCCcceEEEeeecceeecCCC
Q 046651 78 RVLLE--CWDVPILGVCLGHQALGFVHGADIVHAPEPV-HGRLSEIVHNGDRLFHDIPSGQNSGFKVVRYHSLIIDADSL 154 (392)
Q Consensus 78 ~ll~~--~~~iPILGVCLGhQ~La~a~Gg~V~~apep~-hG~~s~i~h~g~~LF~~ips~~~s~f~VvryHSl~V~~~sL 154 (392)
++|++ ..++||||||+|||+|+.++||+|.+.+.+. .|.........+++|.++|+. |.+.++|++.++ +
T Consensus 75 ~~i~~~~~~~~PilGIC~G~Qlla~alGg~V~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~~H~d~~~---l 147 (230)
T d1o1ya_ 75 QLIEEILKKEIPFLGICLGSQMLAKVLGASVYRGKNGEEIGWYFVEKVSDNKFFREFPDR----LRVFQWHGDTFD---L 147 (230)
T ss_dssp HHHHHHHHHTCCEEEETHHHHHHHHHTTCCEEECTTCCEEEEEEEEECCCCGGGTTSCSE----EEEEEEESEEEC---C
T ss_pred HHHHHHHHhcceEEEeecCHHHHHHHhccccccccccccccccccccccchhhhccCCcc----ceEEEecceeee---e
Confidence 55554 2499999999999999999999999988754 444433445678999999988 999999998654 9
Q ss_pred CCCcEEEEEecCCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCcccccccccCCcceEEEEEecCCCEEEE
Q 046651 155 PKELIPIAWSNSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGIMHSTRPHYGV 234 (392)
Q Consensus 155 P~~l~~iAwt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vmgi~h~~~P~~GV 234 (392)
|++++.+|.++. + .++|++. .++||+
T Consensus 148 p~~~~~la~s~~--------------~--------------------------------------~~qa~~~--~~~~g~ 173 (230)
T d1o1ya_ 148 PRRATRVFTSEK--------------Y--------------------------------------ENQGFVY--GKAVGL 173 (230)
T ss_dssp CTTCEEEEECSS--------------C--------------------------------------SCSEEEE--TTEEEE
T ss_pred ccchhhhhhhcC--------------C--------------------------------------ceEEEEe--cCEeEE
Confidence 999999998877 5 5778875 479999
Q ss_pred eccCCCCCCchhHHHHHHHHHHHHHh
Q 046651 235 QFHPESIATCYGSKILRNFREITEDY 260 (392)
Q Consensus 235 QFHPEsiat~~G~~I~~NF~~l~~~~ 260 (392)
|||||. ...++++|++...+.
T Consensus 174 QfHPE~-----~~~~~~~~i~~~~~~ 194 (230)
T d1o1ya_ 174 QFHIEV-----GARTMKRWIEAYKDE 194 (230)
T ss_dssp SSBSSC-----CHHHHHHHHHHTHHH
T ss_pred EeCCCC-----CHHHHHHHHHHhHHH
Confidence 999996 457888887655443
|
| >d1k9vf_ c.23.16.1 (F:) GAT subunit, HisH, (or domain) of imidazoleglycerolphosphate synthase HisF {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: Class I glutamine amidotransferases (GAT) domain: GAT subunit, HisH, (or domain) of imidazoleglycerolphosphate synthase HisF species: Thermotoga maritima [TaxId: 2336]
Probab=99.92 E-value=1.1e-26 Score=209.66 Aligned_cols=178 Identities=19% Similarity=0.119 Sum_probs=103.1
Q ss_pred cEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCC----CchhHHHHHH
Q 046651 5 VRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACP----EDIGICLRVL 80 (392)
Q Consensus 5 ~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~----~d~gi~~~ll 80 (392)
|||+|||...++++++..+|++ +|....++..+..+.+++ ..+|+||| ||||++... .+.++...+.
T Consensus 1 MKI~IiDyg~gN~~si~~al~~-~g~~~~~~~~~~~~~~~~-------~~~D~lIl-PG~G~f~~~~~~l~~~~~~~~i~ 71 (200)
T d1k9vf_ 1 MRIGIISVGPGNIMNLYRGVKR-ASENFEDVSIELVESPRN-------DLYDLLFI-PGVGHFGEGMRRLRENDLIDFVR 71 (200)
T ss_dssp CEEEEECSSSSCCHHHHHHHHH-HTTTSSSCEEEEESSSCS-------CCCSEEEE-CCCSCHHHHHHHHHHTTCHHHHH
T ss_pred CEEEEEeCCCcHHHHHHHHHHH-hccccccceEEEeCChHh-------hccCeEEE-cChHHHHHHHHhhhccccccccc
Confidence 9999999777788999999987 454322111110001111 45899999 999974321 1122222222
Q ss_pred HH-cCCCCEEEEcHHHHHHHHHhCCeeeecC---------------CCceeceeEEEecCCcccccCCCCCCcceEEEee
Q 046651 81 LE-CWDVPILGVCLGHQALGFVHGADIVHAP---------------EPVHGRLSEIVHNGDRLFHDIPSGQNSGFKVVRY 144 (392)
Q Consensus 81 ~~-~~~iPILGVCLGhQ~La~a~Gg~V~~ap---------------ep~hG~~s~i~h~g~~LF~~ips~~~s~f~Vvry 144 (392)
+. ..++||||||+|||+|+...+....... .+..|+.. ..+...... ..+...
T Consensus 72 ~~~~~~~PiLGIClG~QlL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~----~~~~~~ 140 (200)
T d1k9vf_ 72 KHVEDERYVVGVCLGMQLLFEESEEAPGVKGLSLIEGNVVKLRSRRLPHMGWNE-------VIFKDTFPN----GYYYFV 140 (200)
T ss_dssp HHHHTTCEEEEETHHHHTTEEEETTSTTCCCCCCEEEEEEECSCSSCSEEEEEE-------EEESSSSCC----EEEEEE
T ss_pred ccccccceEEEEecceeEEeeecccCcccccccccccccccccccccccccccc-------ccccccCCc----eEEEEe
Confidence 21 2489999999999999875322111100 01111111 111111122 456788
Q ss_pred ecceeecCCCCCCcEEEEEecCCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCcccccccccCCcceEEEE
Q 046651 145 HSLIIDADSLPKELIPIAWSNSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGI 224 (392)
Q Consensus 145 HSl~V~~~sLP~~l~~iAwt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vmgi 224 (392)
|++.+.++ ++ . .++.+.+. + ..+++++
T Consensus 141 hs~~~~~~--~~-~-~~~~~~~~-------------~------------------------------------~~~~a~v 167 (200)
T d1k9vf_ 141 HTYRAVCE--EE-H-VLGTTEYD-------------G------------------------------------EIFPSAV 167 (200)
T ss_dssp ESEEEEEC--GG-G-EEEEEEET-------------T------------------------------------EEEEEEE
T ss_pred eeeeeccc--cc-c-eEEEEEEC-------------C------------------------------------eEEEEEE
Confidence 99888762 22 2 33333320 2 1144456
Q ss_pred EecCCCEEEEeccCCCCCCchhHHHHHHHHHHHH
Q 046651 225 MHSTRPHYGVQFHPESIATCYGSKILRNFREITE 258 (392)
Q Consensus 225 ~h~~~P~~GVQFHPEsiat~~G~~I~~NF~~l~~ 258 (392)
++ .++||||||||+ +++.|.+||+||++++.
T Consensus 168 ~~--~ni~GvQFHPEk-S~~~G~~ll~nFl~~~~ 198 (200)
T d1k9vf_ 168 RK--GRILGFQFHPEK-SSKIGRKLLEKVIECSL 198 (200)
T ss_dssp EE--TTEEEESSBGGG-SHHHHHHHHHHHHHHHH
T ss_pred Ec--CCEEEEeCCCcc-cchhHHHHHHHHHhhhh
Confidence 53 489999999996 46889999999999875
|
| >d1ka9h_ c.23.16.1 (H:) GAT subunit, HisH, (or domain) of imidazoleglycerolphosphate synthase HisF {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: Class I glutamine amidotransferases (GAT) domain: GAT subunit, HisH, (or domain) of imidazoleglycerolphosphate synthase HisF species: Thermus thermophilus [TaxId: 274]
Probab=99.91 E-value=1.5e-24 Score=191.86 Aligned_cols=177 Identities=19% Similarity=0.176 Sum_probs=106.6
Q ss_pred cEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCC----CCchhHHHHHH
Q 046651 5 VRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPAC----PEDIGICLRVL 80 (392)
Q Consensus 5 ~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~----~~d~gi~~~ll 80 (392)
|||||||.+.+|+.+|++.|++ +|++++++++.+ ++ ..+|++|+ ||.|++.. ..+.+....+.
T Consensus 1 Mki~IiD~G~gN~~si~~~l~~-lg~~~~i~~~~~----~i-------~~~d~lIl-pG~g~~~~~~~~~~~~~~~~~~~ 67 (195)
T d1ka9h_ 1 MKALLIDYGSGNLRSAAKALEA-AGFSVAVAQDPK----AH-------EEADLLVL-PGQGHFGQVMRAFQESGFVERVR 67 (195)
T ss_dssp CEEEEECSSCSCHHHHHHHHHH-TTCEEEEESSTT----SC-------SSCSEEEE-CCCSCHHHHHHTTSSSCTHHHHH
T ss_pred CEEEEEeCCCcHHHHHHHHHHH-CCCeEEEECCHH----HH-------HHHhhhhc-CCCccccchhhhccccCCccccc
Confidence 9999999999999999999998 799999886543 33 45899999 55554321 22222222222
Q ss_pred HH-cCCCCEEEEcHHHHHHHHHh-------CCe-----eeecCCCceeceeEEEecCCcccccCCCCCCcceEEEeeecc
Q 046651 81 LE-CWDVPILGVCLGHQALGFVH-------GAD-----IVHAPEPVHGRLSEIVHNGDRLFHDIPSGQNSGFKVVRYHSL 147 (392)
Q Consensus 81 ~~-~~~iPILGVCLGhQ~La~a~-------Gg~-----V~~apep~hG~~s~i~h~g~~LF~~ips~~~s~f~VvryHSl 147 (392)
.. ..++|+||||+|||+|+... |.. +.....................+... .. ..+...|++
T Consensus 68 ~~~~~g~pilGiClG~qll~~~~~e~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----~~~~~~~~~ 142 (195)
T d1ka9h_ 68 RHLERGLPFLGICVGMQVLYEGSEEAPGVRGLGLVPGEVRRFRAGRVPQMGWNALEFGGAFAPL-TG----RHFYFANSY 142 (195)
T ss_dssp HHHHTTCCEEECTHHHHTTSSEETTSTTCCCCCSSSSEEEECCSSSSSEEEEEECEECGGGGGG-TT----CEEEEEESE
T ss_pred ccccccchhhhhhhhhheeeeccccccccCCceeeecccccccccccccccccccccccccccc-cc----cccccccce
Confidence 11 34999999999999998642 111 11111110000000000111111111 12 466778888
Q ss_pred eeecCCCCCCcEEEEEecCCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCcccccccccCCcceEEEEEec
Q 046651 148 IIDADSLPKELIPIAWSNSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGIMHS 227 (392)
Q Consensus 148 ~V~~~sLP~~l~~iAwt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vmgi~h~ 227 (392)
.+.. ++.....+.+.+ . .++++++
T Consensus 143 ~~~~---~~~~~~~~~~~~--------------~-------------------------------------~~~a~v~-- 166 (195)
T d1ka9h_ 143 YGPL---TPYSLGKGEYEG--------------T-------------------------------------PFTALLA-- 166 (195)
T ss_dssp ECCC---CTTCCEEEEETT--------------E-------------------------------------EEEEEEE--
T ss_pred eeec---cccceeeeecCC--------------c-------------------------------------eEEEEEE--
Confidence 7764 233333343332 1 1566665
Q ss_pred CCCEEEEeccCCCCCCchhHHHHHHHHHH
Q 046651 228 TRPHYGVQFHPESIATCYGSKILRNFREI 256 (392)
Q Consensus 228 ~~P~~GVQFHPEsiat~~G~~I~~NF~~l 256 (392)
..++||||||||. ++..|.+|++||++.
T Consensus 167 ~~ni~GvQFHPEk-S~~~G~~lL~nF~~~ 194 (195)
T d1ka9h_ 167 KENLLAPQFHPEK-SGKAGLAFLALARRY 194 (195)
T ss_dssp CSSEEEESSCTTS-SHHHHHHHHHHHHHH
T ss_pred cCCEEEEeCCccc-ccHhHHHHHHHHHHh
Confidence 3489999999997 457899999999873
|
| >d2nv0a1 c.23.16.1 (A:1-195) Hypothetical protein YaaE {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: Class I glutamine amidotransferases (GAT) domain: Hypothetical protein YaaE species: Bacillus subtilis [TaxId: 1423]
Probab=99.90 E-value=7.8e-24 Score=191.44 Aligned_cols=182 Identities=15% Similarity=0.210 Sum_probs=120.1
Q ss_pred ccEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCC--CchhHHHHHHH
Q 046651 4 FVRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACP--EDIGICLRVLL 81 (392)
Q Consensus 4 ~~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~--~d~gi~~~ll~ 81 (392)
.|||.|||.. ...++..++|.+ +|+++++++. .+++ ..+|+|||+||+.+.... ...++ .+.|+
T Consensus 1 m~~igv~~~~-G~~~~~~~al~~-~G~~~~~i~~----~~~l-------~~~D~lIlPGG~~~~~~~~~~~~~~-~~~I~ 66 (195)
T d2nv0a1 1 MLTIGVLGLQ-GAVREHIHAIEA-CGAAGLVVKR----PEQL-------NEVDGLILPGGESTTMRRLIDTYQF-MEPLR 66 (195)
T ss_dssp CCEEEEECSS-SCCHHHHHHHHH-TTCEEEEECS----GGGG-------GGCSEEEECCSCHHHHHHHHHHTTC-HHHHH
T ss_pred CcEEEEEecC-ChHHHHHHHHHH-CCCcEEEECC----HHHH-------hhCCEEEECCCCccHHHHHhhhchh-cchhh
Confidence 4899999985 445778899988 7999998853 3455 349999995543222110 01111 22333
Q ss_pred H--cCCCCEEEEcHHHHHHHHHhCCeeeecCCCceeceeEE-------EecCCcccccCCCCCCcceEEEeeecceeecC
Q 046651 82 E--CWDVPILGVCLGHQALGFVHGADIVHAPEPVHGRLSEI-------VHNGDRLFHDIPSGQNSGFKVVRYHSLIIDAD 152 (392)
Q Consensus 82 ~--~~~iPILGVCLGhQ~La~a~Gg~V~~apep~hG~~s~i-------~h~g~~LF~~ips~~~s~f~VvryHSl~V~~~ 152 (392)
+ ..++||||||+|||+|+...++..........+..... ......+|.+++.. +.++.+|++.+..
T Consensus 67 ~~~~~g~pilGIC~G~Qll~~~~~g~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~h~~~~~~- 141 (195)
T d2nv0a1 67 EFAAQGKPMFGTCAGLIILAKEIAGSDNPHLGLLNVVVERNSFGRQVDSFEADLTIKGLDEP----FTGVFIRAPHILE- 141 (195)
T ss_dssp HHHHTTCCEEEETHHHHHHSBCCC----CCCCCSCEEEECCCSCTTTSEEEEEECCTTCSSC----EEEEEESCCEEEE-
T ss_pred hhhhhcceeeeccccHHHHHhhhcccccccccccccccccccccccceeeeeeecccCCCCC----ceEEEEeeeEEEe-
Confidence 3 34899999999999999987765433211111110000 11223467777776 8899999999987
Q ss_pred CCCCCcEEEEEecCCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCcccccccccCCcceEEEEEecCCCEE
Q 046651 153 SLPKELIPIAWSNSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGIMHSTRPHY 232 (392)
Q Consensus 153 sLP~~l~~iAwt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vmgi~h~~~P~~ 232 (392)
+|+.+.++|.+++ .++|+++ .++|
T Consensus 142 -~~~~~~vla~~~~-----------------------------------------------------~~~a~~~--~ni~ 165 (195)
T d2nv0a1 142 -AGENVEVLSEHNG-----------------------------------------------------RIVAAKQ--GQFL 165 (195)
T ss_dssp -ECTTCEEEEEETT-----------------------------------------------------EEEEEEE--TTEE
T ss_pred -cCCCceeeeeECC-----------------------------------------------------EEEEEEE--CCEE
Confidence 8899999997655 3457764 4899
Q ss_pred EEeccCCCCCCchhHHHHHHHHHHHHHhhhh
Q 046651 233 GVQFHPESIATCYGSKILRNFREITEDYWKR 263 (392)
Q Consensus 233 GVQFHPEsiat~~G~~I~~NF~~l~~~~~~~ 263 (392)
|+|||||... +..++++|+++++++..+
T Consensus 166 g~QFHPE~s~---~~~~~~~F~~~~~~~k~~ 193 (195)
T d2nv0a1 166 GCSFHPELTE---DHRVTQLFVEMVEEYKQK 193 (195)
T ss_dssp EESSCTTSSS---CCHHHHHHHHHHHHHHHH
T ss_pred EEEeCCcccC---CcHHHHHHHHHHHHHHHc
Confidence 9999999743 345899999999987654
|
| >d1q7ra_ c.23.16.1 (A:) Hypothetical protein YaaE {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: Class I glutamine amidotransferases (GAT) domain: Hypothetical protein YaaE species: Bacillus stearothermophilus [TaxId: 1422]
Probab=99.88 E-value=1.9e-23 Score=189.62 Aligned_cols=179 Identities=16% Similarity=0.232 Sum_probs=118.2
Q ss_pred CccEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCC--CCchhHHHHHH
Q 046651 3 EFVRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPAC--PEDIGICLRVL 80 (392)
Q Consensus 3 ~~~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~--~~d~gi~~~ll 80 (392)
..|||.|||... +-+++++.|.+ .|+++++++. .+++ .++|+|||+||+.+... ..+.++ .+.|
T Consensus 5 ~~mkIgii~~~G-n~~s~~~al~~-~G~~~~~v~~----~~~l-------~~~D~lIlPGG~~~~~~~~l~~~~l-~~~I 70 (202)
T d1q7ra_ 5 SNMKIGVLGLQG-AVREHVRAIEA-CGAEAVIVKK----SEQL-------EGLDGLVLPGGESTTMRRLIDRYGL-MEPL 70 (202)
T ss_dssp CCCEEEEESCGG-GCHHHHHHHHH-TTCEEEEECS----GGGG-------TTCSEEEECCCCHHHHHHHHHHTTC-HHHH
T ss_pred cCCEEEEEECCC-CHHHHHHHHHH-CCCcEEEECC----HHHH-------hcCCEEEECCCCcHHHHHHhhhhHH-HHHH
Confidence 459999998743 44788899998 7999988853 3454 56999999544322110 001111 2333
Q ss_pred HH--cCCCCEEEEcHHHHHHHHHhCCeeeecCCCceeceeE-EE----------ecCCcccccCCCCCCcceEEEeeecc
Q 046651 81 LE--CWDVPILGVCLGHQALGFVHGADIVHAPEPVHGRLSE-IV----------HNGDRLFHDIPSGQNSGFKVVRYHSL 147 (392)
Q Consensus 81 ~~--~~~iPILGVCLGhQ~La~a~Gg~V~~apep~hG~~s~-i~----------h~g~~LF~~ips~~~s~f~VvryHSl 147 (392)
++ ..++||||||+|||+|+...++. .++..|.... +. ......+.+++.. +..+.+|+.
T Consensus 71 ~~~~~~gkPiLGIClG~Qll~~~~~~~----~~~~lg~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~ 142 (202)
T d1q7ra_ 71 KQFAAAGKPMFGTCAGLILLAKRIVGY----DEPHLGLMDITVERNSFGRQRESFEAELSIKGVGDG----FVGVFIRAP 142 (202)
T ss_dssp HHHHHTTCCEEEETTHHHHHEEEEESS----CCCCCCCEEEEEECHHHHCCCCCEEEEEEETTTEEE----EEEEESSCC
T ss_pred hhhccccceeeeeehhhHHhhhhcccc----ceeecccccccccccccccccccceeccccccccCC----cceEEEeec
Confidence 33 24999999999999998754332 1222232211 11 0112344455544 777888888
Q ss_pred eeecCCCCCCcEEEEEecCCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCcccccccccCCcceEEEEEec
Q 046651 148 IIDADSLPKELIPIAWSNSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGIMHS 227 (392)
Q Consensus 148 ~V~~~sLP~~l~~iAwt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vmgi~h~ 227 (392)
.+.. +|+.+..+|+.++ .++|++
T Consensus 143 ~~~~--~~~~~~~~a~~~~-----------------------------------------------------~~~a~~-- 165 (202)
T d1q7ra_ 143 HIVE--AGDGVDVLATYND-----------------------------------------------------RIVAAR-- 165 (202)
T ss_dssp EEEE--ECTTCEEEEEETT-----------------------------------------------------EEEEEE--
T ss_pred cccc--cccceeEEeecCC-----------------------------------------------------EEEEEE--
Confidence 8888 8899999997755 456775
Q ss_pred CCCEEEEeccCCCCCCchhHHHHHHHHHHHHHhhhh
Q 046651 228 TRPHYGVQFHPESIATCYGSKILRNFREITEDYWKR 263 (392)
Q Consensus 228 ~~P~~GVQFHPEsiat~~G~~I~~NF~~l~~~~~~~ 263 (392)
..++||+|||||+. .|.+|++||++++++....
T Consensus 166 ~gni~G~QFHPEkS---~~~~il~~Fl~~~~~~k~~ 198 (202)
T d1q7ra_ 166 QGQFLGCSFHPELT---DDHRLMQYFLNMVKEAKMA 198 (202)
T ss_dssp ETTEEEESSCGGGS---SCCHHHHHHHHHHHHHHHH
T ss_pred eCCEEEEEeCCccC---CChHHHHHHHHHHHHhhhh
Confidence 35799999999983 2678999999999876543
|
| >d1l9xa_ c.23.16.1 (A:) gamma-glutamyl hydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: Class I glutamine amidotransferases (GAT) domain: gamma-glutamyl hydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.87 E-value=2e-22 Score=192.48 Aligned_cols=185 Identities=19% Similarity=0.246 Sum_probs=128.1
Q ss_pred HHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchh-----HH-HHHHHH--cCCCCEEE
Q 046651 19 NIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIG-----IC-LRVLLE--CWDVPILG 90 (392)
Q Consensus 19 nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~g-----i~-~~ll~~--~~~iPILG 90 (392)
+.+++|.. +|+.|++|+.+.. .+++..+| ..+|||||+||+.+... .+.. +. ..+... ...+||||
T Consensus 29 sYvk~ie~-aGa~vvpi~~~~~-~~~~~~~l---~~idGillpGG~~~~~~-~~~~~~~r~~~~~~l~~~~~~~~~PilG 102 (288)
T d1l9xa_ 29 SYVKYLES-AGARVVPVRLDLT-EKDYEILF---KSINGILFPGGSVDLRR-SDYAKVAKIFYNLSIQSFDDGDYFPVWG 102 (288)
T ss_dssp HHHHHHHH-TTCEEEEECSSCC-HHHHHHHH---HHSSEEEECCCCCCTTT-CHHHHHHHHHHHHHHHHHHTTCCCCEEE
T ss_pred HHHHHHHH-CCCEEEEECCCCC-HHHHHHHH---hhcCCeEecCCCCCccc-ccccccchHHHHHHHHHHHhhCCCCeEE
Confidence 56788877 7999999998874 66776666 67899999888765543 2221 11 111222 24799999
Q ss_pred EcHHHHHHHHHhCCeeeecCCCceeceeEEEec----CCcccccCCCCCC----cceEEEeeecceeecC------CCCC
Q 046651 91 VCLGHQALGFVHGADIVHAPEPVHGRLSEIVHN----GDRLFHDIPSGQN----SGFKVVRYHSLIIDAD------SLPK 156 (392)
Q Consensus 91 VCLGhQ~La~a~Gg~V~~apep~hG~~s~i~h~----g~~LF~~ips~~~----s~f~VvryHSl~V~~~------sLP~ 156 (392)
||+|||+|+.++||++.......++....+... .+.+|..+|.... ....+..+|++.|... .|++
T Consensus 103 IC~G~Qll~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~H~~~v~~~~~~~~~~l~~ 182 (288)
T d1l9xa_ 103 TCLGFEELSLLISGECLLTATDTVDVAMPLNFTGGQLHSRMFQNFPTELLLSLAVEPLTANFHKWSLSVKNFTMNEKLKK 182 (288)
T ss_dssp ETHHHHHHHHHHHSSCCCEEEEEEEEEECCEECSTTTTCSTTTTSCHHHHHHHHHSCCEEEEEEEECBHHHHHTCHHHHH
T ss_pred EcHHHHHHHHHhCCEeeccccCcCCcceeEEecCCCccceeEeecccchhhhccCCceEEEecccEEEecccchhhhcCC
Confidence 999999999999999887766666665544432 3456766654310 0135778999999632 2788
Q ss_pred CcEEEEEecCCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCcccccccccCCcceEEEEEecCCCEEEEec
Q 046651 157 ELIPIAWSNSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNRMRREVLMGIMHSTRPHYGVQF 236 (392)
Q Consensus 157 ~l~~iAwt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vmgi~h~~~P~~GVQF 236 (392)
++.++|++.+ + ....|++++|.+.|+|||||
T Consensus 183 ~~~v~a~s~d--------------~-----------------------------------~~e~I~~ie~~~~pi~GvQf 213 (288)
T d1l9xa_ 183 FFNVLTTNTD--------------G-----------------------------------KIEFISTMEGYKYPVYGVQW 213 (288)
T ss_dssp HEEEEEEEES--------------S-----------------------------------SCEEEEEEEESSSCEEEESS
T ss_pred ceEEEEEECC--------------C-----------------------------------CeEEEEEEEcCCCcEEEEEc
Confidence 9999999977 3 11268999999999999999
Q ss_pred cCCCC-----------CCchhHHH---HHHH-HHHHH
Q 046651 237 HPESI-----------ATCYGSKI---LRNF-REITE 258 (392)
Q Consensus 237 HPEsi-----------at~~G~~I---~~NF-~~l~~ 258 (392)
|||+. .+..+.++ |.|| .+.|+
T Consensus 214 HPEk~~fE~~~~~~~~H~~~~~~~~~~~~~ffv~~~r 250 (288)
T d1l9xa_ 214 HPEKAPYEWKNLDGISHAPNAVKTAFYLAEFFVNEAR 250 (288)
T ss_dssp CTTHHHHCCSSCTTCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCcccccCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99953 34445555 6664 35554
|
| >d2abwa1 c.23.16.1 (A:2-219) Pyridoxine biosynthesis protein 2, Pdx2 {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: Class I glutamine amidotransferases (GAT) domain: Pyridoxine biosynthesis protein 2, Pdx2 species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=99.82 E-value=3.2e-20 Score=167.99 Aligned_cols=187 Identities=13% Similarity=0.121 Sum_probs=108.4
Q ss_pred ccEEEEEECCCCchHHHHHHHHHhCCCCe-EEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCC----chhHHHH
Q 046651 4 FVRTLLIDNYDSYTYNIYQELSTINGVPP-VVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPE----DIGICLR 78 (392)
Q Consensus 4 ~~r~LlIDnyDSyT~nl~q~L~~v~G~~p-vVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~----d~gi~~~ 78 (392)
.|+|.|||..++| +...+.|.+ +|.+. .++..+ +++++. .+|+|||+||+....+.. ..+....
T Consensus 2 ~ikIGvl~l~G~~-~~~~~al~~-lg~~~~~v~~~~--~~~~l~-------~~D~lIlPGgg~~~~~~~~~~~~~~~~~~ 70 (218)
T d2abwa1 2 EITIGVLSLQGDF-EPHINHFIK-LQIPSLNIIQVR--NVHDLG-------LCDGLVIPGGESTTVRRCCAYENDTLYNA 70 (218)
T ss_dssp CEEEEEECTTSCC-HHHHHHHHT-TCCTTEEEEEEC--SHHHHH-------TCSEEEECCSCHHHHHHHTTHHHHHHHHH
T ss_pred CCEEEEEeCCCcH-HHHHHHHHH-cCCCceEEEEeC--CHHHHh-------hCCEEEEcCCCccHHHHHHHHHhccchHH
Confidence 5899999987777 455678877 57543 333333 367775 499999955433222111 1122223
Q ss_pred HHHH--cCCCCEEEEcHHHHHHHHHhCCeeeecCCCceeceeE--------------------EE-ecCCcccccCCCCC
Q 046651 79 VLLE--CWDVPILGVCLGHQALGFVHGADIVHAPEPVHGRLSE--------------------IV-HNGDRLFHDIPSGQ 135 (392)
Q Consensus 79 ll~~--~~~iPILGVCLGhQ~La~a~Gg~V~~apep~hG~~s~--------------------i~-h~g~~LF~~ips~~ 135 (392)
++.. ..++||||||+|||+|+...+..........++.... +. ...+.+|..+...
T Consensus 71 i~~~~~~~gkPilGIC~G~QlL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 149 (218)
T d2abwa1 71 LVHFIHVLKKPIWGTCAGCILLSKNVENIKLYSNFGNKFSFGGLDITICRNFYGSQNDSFICSLNIISDSSAFKKDLTA- 149 (218)
T ss_dssp HHHHHHTSCCCEEEETHHHHHTEEEEECCCSCCTTGGGSCCCCEEEEEECCC----CCEEEEECEECCCCTTCCTTCEE-
T ss_pred HHHHHHHcCCeEEEecHHHHHHHHhccCCccccccccccccccccccceecccCCcccccccceeeccCCccccCcccc-
Confidence 3332 3599999999999999876544433322221111110 11 1223344433322
Q ss_pred CcceEEEeeecceeecCCCCCCcEEEEEecCCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCccccccccc
Q 046651 136 NSGFKVVRYHSLIIDADSLPKELIPIAWSNSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYRHSIYSNR 215 (392)
Q Consensus 136 ~s~f~VvryHSl~V~~~sLP~~l~~iAwt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 215 (392)
..++..|++.+ ++++...+|++.. . +
T Consensus 150 ---~~~y~~h~~~~----~~~~~~~~a~~~~--------------~---------------------------------~ 175 (218)
T d2abwa1 150 ---ACIRAPYIREI----LSDEVKVLATFSH--------------E---------------------------------S 175 (218)
T ss_dssp ---EEESCCEEEEE----CCTTCEEEEEEEE--------------T---------------------------------T
T ss_pred ---eeEEeeEEEEe----ecCChhhheeecc--------------c---------------------------------c
Confidence 22333355554 4556677776544 1 0
Q ss_pred CCcceEEEEEecCCCEEEEeccCCCCCCchhHHHHHHHHHHHHHhh
Q 046651 216 MRREVLMGIMHSTRPHYGVQFHPESIATCYGSKILRNFREITEDYW 261 (392)
Q Consensus 216 ~~~~~vmgi~h~~~P~~GVQFHPEsiat~~G~~I~~NF~~l~~~~~ 261 (392)
.+...++|+++ .++||+|||||...+ .+++++|+++++++.
T Consensus 176 ~g~~~i~av~~--~ni~G~QFHPE~s~d---~r~~~~F~~~v~~~~ 216 (218)
T d2abwa1 176 YGPNIIAAVEQ--NNCLGTVFHPELLPH---TAFQQYFYEKVKNYK 216 (218)
T ss_dssp TEEEEEEEEEE--TTEEEESSCGGGSSC---CHHHHHHHHHHHHHH
T ss_pred CCCeEEEEEec--CCEEEEEcCCeecCC---chHHHHHHHHHHhhh
Confidence 11227889974 579999999998432 358999999998764
|
| >d1vcoa1 c.23.16.1 (A:298-547) CTP synthase PyrG, C-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: Class I glutamine amidotransferases (GAT) domain: CTP synthase PyrG, C-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=99.78 E-value=1.3e-19 Score=170.64 Aligned_cols=202 Identities=18% Similarity=0.214 Sum_probs=125.6
Q ss_pred ccEEEEEECC----CCchHHHHHHHHH---hCCCCeEE--EeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchh
Q 046651 4 FVRTLLIDNY----DSYTYNIYQELST---INGVPPVV--VRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIG 74 (392)
Q Consensus 4 ~~r~LlIDny----DSyT~nl~q~L~~---v~G~~pvV--V~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~g 74 (392)
.++|.||--| |+|. +|.++|.- .+++.+.+ |..+..+-+++...| ..+|||||.||.|.......+.
T Consensus 3 ~v~IaiVGKY~~l~DaY~-Si~eAL~hA~~~~~~~v~i~wi~s~~l~~~~~~~~L---~~~dGIlvPGGFG~rG~eGki~ 78 (250)
T d1vcoa1 3 TVKIAIAGKYVKMPDAYL-SLLEALRHAGIKNRARVEVKWVDAESLEAADLEEAF---RDVSGILVPGGFGVRGIEGKVR 78 (250)
T ss_dssp EEEEEEEESCC---CTTH-HHHHHHHHHHHHTTEEEEEEEEEGGGC--CCHHHHT---TTCSCEEECCCCSSTTHHHHHH
T ss_pred eEEEEEEeCCCCCchHHH-HHHHHHHHhHHhcCCeEEEEEEcchhcchhhHHHHH---hcCCeEEecCCCCccchHHHHH
Confidence 4788888555 7774 55565542 25655544 444333223344444 7899999999999764333332
Q ss_pred HHHHHHHHcCCCCEEEEcHHHHHHHHHhCCeeeecCCCceece------------------------------eEEEecC
Q 046651 75 ICLRVLLECWDVPILGVCLGHQALGFVHGADIVHAPEPVHGRL------------------------------SEIVHNG 124 (392)
Q Consensus 75 i~~~ll~~~~~iPILGVCLGhQ~La~a~Gg~V~~apep~hG~~------------------------------s~i~h~g 124 (392)
+.+..++. +||+||||||||++...+...|...+...+... .....++
T Consensus 79 -ai~yARen-~iPfLGIClGmQ~avIEfARnvlgl~~A~s~Ef~~~~~~pvi~~~~e~~~~~~~ggtmRLG~~~~~l~~~ 156 (250)
T d1vcoa1 79 -AAQYARER-KIPYLGICLGLQIAVIEFARNVAGLKGANSTEFDPHTPHPVIDLMPEQLEVEGLGGTMRLGDWPMRIKPG 156 (250)
T ss_dssp -HHHHHHHT-TCCEEEETHHHHHHHHHHHHHTSCCTTCEETTTCTTCSCEEEEESCGGGCC---CCCCEEEEEEEEECTT
T ss_pred -HHHHHHHc-chhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCCCCeEEEeeccceeccccCccccccceeeeecCC
Confidence 23555555 999999999999998876555544333211111 0011123
Q ss_pred CcccccCCCCCCcceEEEeeecceeecCCC----CCCcEEEEEecCCCCccccccCCCCCCCcccccchhhhhhcccccc
Q 046651 125 DRLFHDIPSGQNSGFKVVRYHSLIIDADSL----PKELIPIAWSNSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDIST 200 (392)
Q Consensus 125 ~~LF~~ips~~~s~f~VvryHSl~V~~~sL----P~~l~~iAwt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (392)
+.+++-..+. .+.--.-|.|.|+++.. -.+|...+|+.+.+ +
T Consensus 157 S~~~~~Y~~~---~i~ERhRHRYevN~~y~~~le~~gl~~sg~~~d~~------------~------------------- 202 (250)
T d1vcoa1 157 TLLHRLYGKE---EVLERHRHRYEVNPLYVDGLERAGLVVSATTPGMR------------G------------------- 202 (250)
T ss_dssp SHHHHHHCCS---EEEEEEEESEEECHHHHHHHHHHTEEEEEECCCBT------------T-------------------
T ss_pred cHHHhhcccc---EEeehcccceeechhhhHHHHhccccccccCcccc------------c-------------------
Confidence 3333322222 12223558899876432 24789999987610 0
Q ss_pred cccCCCcccccccccCCcceEEEEEecCCCEE-EEeccCCCCCCch-hHHHHHHHHHHHHHh
Q 046651 201 QIKNGSYRHSIYSNRMRREVLMGIMHSTRPHY-GVQFHPESIATCY-GSKILRNFREITEDY 260 (392)
Q Consensus 201 ~~~~g~~~~~~~~~~~~~~~vmgi~h~~~P~~-GVQFHPEsiat~~-G~~I~~NF~~l~~~~ 260 (392)
.+...+++|+..++|+| |+|||||..+++. .+.||..|++.+.++
T Consensus 203 ---------------~~~~lvEiiEl~~HPffvgvQfHPEf~Srp~~phPLF~~fi~Aal~~ 249 (250)
T d1vcoa1 203 ---------------RGAGLVEAIELKDHPFFLGLQSHPEFKSRPMRPSPPFVGFVEAALAY 249 (250)
T ss_dssp ---------------BSTTCEEEEEETTSSSEEEESSCGGGGCBTTBCCHHHHHHHHHHHHH
T ss_pred ---------------CCCCeEEEEECCCCCcEEEecCCccccCCCCCCCccHHHHHHHHHhc
Confidence 11227999999999987 9999999987765 589999999999876
|
| >d1s1ma1 c.23.16.1 (A:287-544) CTP synthase PyrG, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: Class I glutamine amidotransferases (GAT) domain: CTP synthase PyrG, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.76 E-value=8.7e-19 Score=165.60 Aligned_cols=200 Identities=21% Similarity=0.255 Sum_probs=124.6
Q ss_pred ccEEEEEECC----CCchHHHHHHHHH---hCCCCeEEEeCCCCCHHH-HHhhhcccCCcCEEEECCCCCCCCCCCchhH
Q 046651 4 FVRTLLIDNY----DSYTYNIYQELST---INGVPPVVVRNDEWTWRD-ICRYLYEENAFDNIVISPGPGSPACPEDIGI 75 (392)
Q Consensus 4 ~~r~LlIDny----DSyT~nl~q~L~~---v~G~~pvVV~nd~~~~ee-l~~~l~e~~~fDgIVISpGPGsp~~~~d~gi 75 (392)
+++|.||--| |+|. ++...|.- .+++.+.+..-|....++ ....| ..+|||||.||.|.......+.
T Consensus 3 ev~Ia~vGKY~~l~DaY~-Sv~eaL~ha~~~~~~~v~i~wi~s~~~e~~~~~~L---~~~dGIlvPGGFG~RG~eGki~- 77 (258)
T d1s1ma1 3 EVTIGMVGKYIELPDAYK-SVIEALKHGGLKNRVSVNIKLIDSQDVETRGVEIL---KGLDAILVPGGFGYRGVEGMIT- 77 (258)
T ss_dssp EEEEEEEESSCSSGGGGH-HHHHHHHHHHHHHTEEEEEEEEEHHHHHHHCTTTT---TTCSEEEECCCCSSTTHHHHHH-
T ss_pred eeEEEEEeCcCCCchhHH-hHHHHHHHhHHhcCCeEEEEEEccccccccccccc---cccccEEeecccCcCCHHHHHH-
Confidence 5788998655 6774 56666542 257666665544322221 11223 6799999998888654222221
Q ss_pred HHHHHHHcCCCCEEEEcHHHHHHHHHhCCeeeecCCC------------ce----------------------ece----
Q 046651 76 CLRVLLECWDVPILGVCLGHQALGFVHGADIVHAPEP------------VH----------------------GRL---- 117 (392)
Q Consensus 76 ~~~ll~~~~~iPILGVCLGhQ~La~a~Gg~V~~apep------------~h----------------------G~~---- 117 (392)
+.+..++. +||+||||||||++...+...|...+.. +. |..
T Consensus 78 ai~yARen-~iPfLGIClGmQ~avIE~ARnvlg~~~A~S~Ef~p~t~~pvi~~~~~~~~~~~~~~~~~~~~~~GgTmrlG 156 (258)
T d1s1ma1 78 TARFAREN-NIPYLGICLGMQVALIDYARHVANMENANSTEFVPDCKYPVVALITEWRDENGNVEVRSEKSDLGGTMRLG 156 (258)
T ss_dssp HHHHHHHT-TCCEEEETHHHHHHHHHHHHHHHCCTTCEETTTCSSCSCEEEECTTTCCCTTSCCC----------CCEEE
T ss_pred HHHHHHHc-CccHHHHHHHHHHHHHHHHHHhCCCCCCcCCCCCCCCCCCEEEecccccccCCceeEeecccCccccccCc
Confidence 23344444 9999999999999988755444333221 10 000
Q ss_pred -eEEE-ecCCcccccCCCCCCcceEEEeeecceeecCCC----CCCcEEEEEecCCCCccccccCCCCCCCcccccchhh
Q 046651 118 -SEIV-HNGDRLFHDIPSGQNSGFKVVRYHSLIIDADSL----PKELIPIAWSNSADGFSYLGTLQSGEIPDAYQSQSRQ 191 (392)
Q Consensus 118 -s~i~-h~g~~LF~~ips~~~s~f~VvryHSl~V~~~sL----P~~l~~iAwt~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (392)
..+. .+++.+.+-.... .+.--.-|.|.|.++.. ..+|...||+.+ +
T Consensus 157 ~~~~~l~~~s~~~~~Y~~~---~i~ERHRHRYevN~~y~~~le~~gl~~sG~s~d--------------g---------- 209 (258)
T d1s1ma1 157 AQQCQLVDDSLVRQLYNAP---TIVERHRHRYEVNNMLLKQIEDAGLRVAGRSGD--------------D---------- 209 (258)
T ss_dssp EEEEEECTTCHHHHHTTSS---EEEEEEEECCEECHHHHHHHHHTTCEEEEECSS--------------S----------
T ss_pred ccchhhhhHHHHHHhcCcc---eehhhhhcchhhhhhhhhhhhcCCceeeeecCC--------------C----------
Confidence 0111 1222222222222 02223558999987532 258999999877 3
Q ss_pred hhhcccccccccCCCcccccccccCCcceEEEEEecCCCEE-EEeccCCCCCCch-hHHHHHHHHHHHHHhhhh
Q 046651 192 KILLSDISTQIKNGSYRHSIYSNRMRREVLMGIMHSTRPHY-GVQFHPESIATCY-GSKILRNFREITEDYWKR 263 (392)
Q Consensus 192 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vmgi~h~~~P~~-GVQFHPEsiat~~-G~~I~~NF~~l~~~~~~~ 263 (392)
..+++|+..++|+| |+|||||..+.+. .+.||..|++.+.++.++
T Consensus 210 ---------------------------~~vEiiEl~~HPffvg~QfHPEf~Srp~~p~PLF~~Fi~Aa~~~~k~ 256 (258)
T d1s1ma1 210 ---------------------------QLVEIIEVPNHPWFVACQFHPEFTSTPRDGHPLFAGFVKAASEFQKR 256 (258)
T ss_dssp ---------------------------CCEEEEECTTSSSEEEESSCGGGTCCTTTCCHHHHHHHHHHHHHHHH
T ss_pred ---------------------------CeEEEEEeCCCCeEEEecCCccccCCCCCCChHHHHHHHHHHHHHHh
Confidence 17999999999965 9999999987665 568999999999987665
|
| >d2ghra1 c.23.16.8 (A:17-297) Homoserine O-succinyltransferase HTS (MetA) {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: HTS-like domain: Homoserine O-succinyltransferase HTS (MetA) species: Bacillus cereus [TaxId: 1396]
Probab=99.60 E-value=1.7e-15 Score=144.70 Aligned_cols=141 Identities=19% Similarity=0.141 Sum_probs=101.5
Q ss_pred CHHHHHhhhcccCCcCEEEECCCCCCCCCCCc---hhHHHHHHHHc--CCCCEEEEcHHHHHHHHHhCCeeeec-CCCce
Q 046651 41 TWRDICRYLYEENAFDNIVISPGPGSPACPED---IGICLRVLLEC--WDVPILGVCLGHQALGFVHGADIVHA-PEPVH 114 (392)
Q Consensus 41 ~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d---~gi~~~ll~~~--~~iPILGVCLGhQ~La~a~Gg~V~~a-pep~h 114 (392)
+++++.. ..|||+||+|+|-+....+| +.-+.++++.+ ..+|+||||+|||++++++||.+.+. ++...
T Consensus 75 ~~~~i~~-----~~fDglIITGap~~~~~fedv~y~~eL~eii~~a~~~~~~~lgiCwGaQa~~~~lgGi~k~~~~~k~~ 149 (281)
T d2ghra1 75 TFRDIEN-----EKFDGLIITGAPVETLSFEEVDYWEELKRIMEYSKTNVTSTLHICWGAQAGLYHHYGVQKYPLKEKMF 149 (281)
T ss_dssp CHHHHTT-----CCEEEEEECCCSCTTSCGGGSTTHHHHHHHHHHHHHHEEEEEEETHHHHHHHHHHHCCCCEEEEEEEE
T ss_pred hHHHhhc-----ccCCEEEEeCCCCCcccccccccHHHHHHHHHHHHhcCCCeEEEcHHHHHHHHHhCCCccccCCCceE
Confidence 4566655 78999999999987654334 33344555542 38999999999999999999987765 45567
Q ss_pred eceeEE-EecCCcccccCCCCCCcceEEEeeecceeecCC--CCCCcEEEEEecCCCCccccccCCCCCCCcccccchhh
Q 046651 115 GRLSEI-VHNGDRLFHDIPSGQNSGFKVVRYHSLIIDADS--LPKELIPIAWSNSADGFSYLGTLQSGEIPDAYQSQSRQ 191 (392)
Q Consensus 115 G~~s~i-~h~g~~LF~~ips~~~s~f~VvryHSl~V~~~s--LP~~l~~iAwt~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (392)
|..... ....++|+.+++.. |.+...|.-.+..+. .++++.++|.++. +
T Consensus 150 Gv~~~~~~~~~~pL~~g~~d~----f~~p~Sr~~~~~~d~v~~~p~l~vLa~S~~--------------~---------- 201 (281)
T d2ghra1 150 GVFEHEVREQHVKLLQGFDEL----FFAPHSRHTEVRESDIREVKELTLLANSEE--------------A---------- 201 (281)
T ss_dssp EEEEEEECCSSCGGGTTCCSE----EEEEEEEEEECCHHHHHTCTTEEEEEEETT--------------T----------
T ss_pred EEEEEeeccCCChhccCCcch----hheeeeecccCCHHHHhhCCCceEEeecCC--------------c----------
Confidence 765443 34567999999887 888766644443211 4567888888876 3
Q ss_pred hhhcccccccccCCCcccccccccCCcceEEEEEecCCCEEEEeccCCCCC
Q 046651 192 KILLSDISTQIKNGSYRHSIYSNRMRREVLMGIMHSTRPHYGVQFHPESIA 242 (392)
Q Consensus 192 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vmgi~h~~~P~~GVQFHPEsia 242 (392)
-+.++...+..++++|+|||...
T Consensus 202 ----------------------------g~~~~~~~~~~~~~iQgHPEYd~ 224 (281)
T d2ghra1 202 ----------------------------GVHLVIGQEGRQVFALGHSEYSC 224 (281)
T ss_dssp ----------------------------EEEEEEEGGGTEEEECSCTTCCT
T ss_pred ----------------------------ccEEEEECCCCEEEEeCCCCcch
Confidence 34455667788999999999844
|
| >d1t3ta2 c.23.16.1 (A:1034-1295) FGAM synthase PurL, amidotransferase domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: Class I glutamine amidotransferases (GAT) domain: FGAM synthase PurL, amidotransferase domain species: Salmonella typhimurium [TaxId: 90371]
Probab=99.11 E-value=4.5e-09 Score=98.77 Aligned_cols=209 Identities=14% Similarity=0.143 Sum_probs=114.9
Q ss_pred CCccEEEEEECCCCch-HHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCC-chhHH---
Q 046651 2 LEFVRTLLIDNYDSYT-YNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPE-DIGIC--- 76 (392)
Q Consensus 2 ~~~~r~LlIDnyDSyT-~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~-d~gi~--- 76 (392)
+.++||+||-.+.++. +....++.. .|+++++|... ++..--.+..+||+|||.||..-=+... -.+..
T Consensus 4 ~~kpkvaVl~~pGtNcd~e~~~Af~~-aG~~~~~v~~~-----dl~~~~~~L~~~~~lvipGGFSygD~l~ag~~~a~~~ 77 (262)
T d1t3ta2 4 GARPKVAVLREQGVNSHVEMAAAFHR-AGFDAIDVHMS-----DLLGGRIGLGNFHALVACGGFSYGDVLGAGEGWAKSI 77 (262)
T ss_dssp TCCCEEEEEECTTBCCHHHHHHHHHH-TTCEEEEEEHH-----HHHHTSCCGGGCSEEEECCBCGGGGTTSTTHHHHHHH
T ss_pred CCCCeEEEEeCCCCCcHHHHHHHHHH-cCCceEEEEee-----ecccCcccccccceEEEeccccccccccchhHHHhhh
Confidence 4578999999999885 678899988 69999988643 3322000115799999976653221111 01111
Q ss_pred -------HHHHHH--cCCCCEEEEcHHHHHHHHHh----CC----eeeec-CCCceeceeE--EEecCCcccccCCCCCC
Q 046651 77 -------LRVLLE--CWDVPILGVCLGHQALGFVH----GA----DIVHA-PEPVHGRLSE--IVHNGDRLFHDIPSGQN 136 (392)
Q Consensus 77 -------~~ll~~--~~~iPILGVCLGhQ~La~a~----Gg----~V~~a-pep~hG~~s~--i~h~g~~LF~~ips~~~ 136 (392)
.++++. ..+.||||||.|+|+|...- |. +..+. ..-...+... +..+.+.+|+++...
T Consensus 78 ~~~~~~~~~~~~f~~~~~~~iLGICNGfQiL~elg~l~pg~~~~~~~~~N~s~rfe~rw~~~~v~~~~s~~~~~~~g~-- 155 (262)
T d1t3ta2 78 LFNHRVRDEFETFFHRPQTLALGVCNGCQMMSNLRELIPGSELWPRFVRNHSDRFEARFSLVEVTQSPSLLLQGMVGS-- 155 (262)
T ss_dssp HHSHHHHHHHHHHHHSSSCEEEEETHHHHHHHTTGGGSTTCTTCCEEECCTTSSCEEEEEEEEECCCSCGGGTTCTTC--
T ss_pred hhhhHHHHHHHHHhhcCCceEEeechHHHHHHHhcccCCCcccCcccccccCCeEEEEEeeeccccccChhhccCCCc--
Confidence 111111 34899999999999999852 11 01111 1111222212 223455667666432
Q ss_pred cceEEEeeecce---eecCC----C-CCCcEEEEEecCCCCccccccCCCCCCCcccccchhhhhhcccccccccCCCcc
Q 046651 137 SGFKVVRYHSLI---IDADS----L-PKELIPIAWSNSADGFSYLGTLQSGEIPDAYQSQSRQKILLSDISTQIKNGSYR 208 (392)
Q Consensus 137 s~f~VvryHSl~---V~~~s----L-P~~l~~iAwt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 208 (392)
.+.+.--|... +..+. | -++.+.+-+.+.. + ......-.||+++..
T Consensus 156 -~l~ipiaHgEG~f~~~~~~~l~~L~~~~~ia~~Y~d~~-------------g------~~~~~yp~NPNGS~~------ 209 (262)
T d1t3ta2 156 -QMPIAVSHGEGRVEVRDDAHLAALESKGLVALRYVDNF-------------G------KVTETYPANPNGSPN------ 209 (262)
T ss_dssp -EEEEEEEESSCEEECSSHHHHHHHHHTTCEEEEEBCTT-------------S------CBCCSTTTSSSCCGG------
T ss_pred -ceEeeeecCCCCcccCCHHHHHHhhhccceEEEEEcCC-------------C------ccccccCCCCCCCcc------
Confidence 25554444322 21110 1 1345555555431 1 000011123332222
Q ss_pred cccccccCCcceEEEEEecCCCEEEEeccCCCCCC--------------chhHHHHHHHHH
Q 046651 209 HSIYSNRMRREVLMGIMHSTRPHYGVQFHPESIAT--------------CYGSKILRNFRE 255 (392)
Q Consensus 209 ~~~~~~~~~~~~vmgi~h~~~P~~GVQFHPEsiat--------------~~G~~I~~NF~~ 255 (392)
-|.||...+..|+|++.|||+... ..|.+||+|=++
T Consensus 210 -----------~IAGIcs~~GrvlgmMPHPER~~~~~q~~~~~~~~~~~spw~~iF~na~~ 259 (262)
T d1t3ta2 210 -----------GITAVTTENGRVTIMMPHPERVFRTVANSWHPENWGEDSPWMRIFRNARK 259 (262)
T ss_dssp -----------GEEEEECTTSSEEEESSBGGGSSBGGGCSSCCTTCCSBCTTHHHHHHHHH
T ss_pred -----------ceeEEECCCCCEEEEcCChhHhhhccccCcCCcccCCCChHHHHHHHHHH
Confidence 699999999999999999998421 236788888655
|
| >d1vhqa_ c.23.16.2 (A:) Putative sigma cross-reacting protein 27A (SCRP-27A, EllB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: DJ-1/PfpI domain: Putative sigma cross-reacting protein 27A (SCRP-27A, EllB) species: Escherichia coli [TaxId: 562]
Probab=96.95 E-value=0.0003 Score=63.29 Aligned_cols=92 Identities=14% Similarity=0.161 Sum_probs=61.8
Q ss_pred EEEEE----ECCCCc----hHHHHHHHHHhCCCCeEEEeCCCC--------------------------------CHHHH
Q 046651 6 RTLLI----DNYDSY----TYNIYQELSTINGVPPVVVRNDEW--------------------------------TWRDI 45 (392)
Q Consensus 6 r~LlI----DnyDSy----T~nl~q~L~~v~G~~pvVV~nd~~--------------------------------~~eel 45 (392)
|++|| ..+|.+ ....+..|++ .|++++++..+.. +++++
T Consensus 3 KvaviLsg~g~~DG~E~~E~~~~~~~L~r-aG~~v~~~sp~~~~~~~~~h~~~~~~~~~r~~~~~~~~i~~~~~~~l~~v 81 (217)
T d1vhqa_ 3 KIGVILSGCGVYDGSEIHEAVLTLLAISR-SGAQAVCFAPDKQQVDVINHLTGEAMTETRNVLIEAARITRGEIRPLAQA 81 (217)
T ss_dssp EEEEECCSBSTTTSBCHHHHHHHHHHHHH-TTCEEEEEECSSBCSCCBCTTTCCBCSCCCBHHHHHTTTTTTCCEEGGGC
T ss_pred EEEEEecCCCCCCchhHHHHHHHHHHHHH-CCCEEEEEecCCCccceeccCCCcccccccceeeeeeeeeccccCChHHC
Confidence 57777 234544 2346677888 7999998865421 13333
Q ss_pred HhhhcccCCcCEEEECCCCCCCCCCCch----------hHHHHHHHH--cCCCCEEEEcHHHHHHHHHhC
Q 046651 46 CRYLYEENAFDNIVISPGPGSPACPEDI----------GICLRVLLE--CWDVPILGVCLGHQALGFVHG 103 (392)
Q Consensus 46 ~~~l~e~~~fDgIVISpGPGsp~~~~d~----------gi~~~ll~~--~~~iPILGVCLGhQ~La~a~G 103 (392)
.. ..||+|||.||.|......+. ....+++++ ..++||-.||-|-++|+.+.+
T Consensus 82 ~~-----~~yDaliiPGG~g~~~~l~~~~~~~~~~~~~~~v~~li~~~~~~gk~iaaIC~gp~~l~~~~~ 146 (217)
T d1vhqa_ 82 DA-----AELDALIVPGGFGAAKNLSNFASLGSECTVDRELKALAQAMHQAGKPLGFMCIAPAMLPKIFD 146 (217)
T ss_dssp CG-----GGCSEEEECCSTHHHHTSBCHHHHGGGCCBCHHHHHHHHHHHHTTCCEEEETTGGGGHHHHCS
T ss_pred CH-----hHCCEEEecCCcccHHHHhhhhccccccccCHHHHHHHHHHHHcCCCEEEEChhHHHHHHHhc
Confidence 22 679999999998875443222 234566665 359999999999999999854
|
| >d1g2ia_ c.23.16.2 (A:) Intracellular protease {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: DJ-1/PfpI domain: Intracellular protease species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=96.41 E-value=0.0011 Score=55.94 Aligned_cols=89 Identities=16% Similarity=0.300 Sum_probs=57.0
Q ss_pred cEEEEEECCCCch-H---HHHHHHHHhCCCCeEEEeCCCCC--------------HHHHHhhhcccCCcCEEEECCCCCC
Q 046651 5 VRTLLIDNYDSYT-Y---NIYQELSTINGVPPVVVRNDEWT--------------WRDICRYLYEENAFDNIVISPGPGS 66 (392)
Q Consensus 5 ~r~LlIDnyDSyT-~---nl~q~L~~v~G~~pvVV~nd~~~--------------~eel~~~l~e~~~fDgIVISpGPGs 66 (392)
|||+++= +|.|. . ..++.|.+ .|.++.++..+.-. ++++.. .+||.|||.||++.
T Consensus 1 mKv~il~-~dgf~~~E~~~p~~~l~~-ag~~v~~vs~~~~~V~~~~g~~i~~d~~~~~~~~-----~~~d~viipGg~~~ 73 (166)
T d1g2ia_ 1 MKVLFLT-ANEFEDVELIYPYHRLKE-EGHEVYIASFERGTITGKHGYSVKVDLTFDKVNP-----EEFDALVLPGGRAP 73 (166)
T ss_dssp CEEEEEC-CTTBCHHHHHHHHHHHHH-TTCEEEEEESSSEEEECTTSCEEEECEEGGGCCG-----GGCSEEEECCBSHH
T ss_pred CEEEEEe-CCCcCHHHHHHHHHHHHH-CCCEEEEEeCCCceEeecCCcEEeccccHHHcCc-----ccccEEEEecccch
Confidence 8888774 34542 2 34566766 79988877654421 223222 47999999877654
Q ss_pred CCCCCchhHHHHHHHH--cCCCCEEEEcHHHHHHHHH
Q 046651 67 PACPEDIGICLRVLLE--CWDVPILGVCLGHQALGFV 101 (392)
Q Consensus 67 p~~~~d~gi~~~ll~~--~~~iPILGVCLGhQ~La~a 101 (392)
.....+ .-..++|++ ..++||.+||-|-.+|+.+
T Consensus 74 ~~~~~~-~~~~~~l~~~~~~~k~i~aiC~G~~~La~a 109 (166)
T d1g2ia_ 74 ERVRLN-EKAVSIARKMFSEGKPVASICHGPQILISA 109 (166)
T ss_dssp HHHTTC-HHHHHHHHHHHHTTCCEEEETTTTHHHHHH
T ss_pred hhhccC-hHHHHHHHHHHhcCCeeeeccccchhhhhc
Confidence 322222 224455554 3589999999999999987
|
| >d1sy7a1 c.23.16.3 (A:553-736) Catalase, C-terminal domain {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: Catalase, C-terminal domain domain: Catalase, C-terminal domain species: Neurospora crassa [TaxId: 5141]
Probab=96.34 E-value=0.00068 Score=57.76 Aligned_cols=76 Identities=17% Similarity=0.137 Sum_probs=50.8
Q ss_pred HHHHHHHhCCCCeEEEeCCCCC--------------HHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHH--c
Q 046651 20 IYQELSTINGVPPVVVRNDEWT--------------WRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLE--C 83 (392)
Q Consensus 20 l~q~L~~v~G~~pvVV~nd~~~--------------~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~--~ 83 (392)
+++.|.+ .|.+++++..+.-. .++... ..||.+||.||++.+....+-....++|++ .
T Consensus 22 ~~~~l~~-ag~~v~ivs~~~~~v~~~~g~~v~~d~~~~~~~~-----~~~dalivpgg~~~~~~~~~~~~~~~~l~~~~~ 95 (184)
T d1sy7a1 22 AYAAISA-NQAIPLVIGPRRSKVTAANGSTVQPHHHLEGFRS-----TMVDAIFIPGGAKAAETLSKNGRALHWIREAFG 95 (184)
T ss_dssp HHHHHHH-TTCEEEEEESCSSCEEBTTSCEECCSEETTTCCG-----GGSSEEEECCCHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHH-CCCEEEEEEecCCccccccccccccccccccccc-----ccceEEEEeeccccccccccccchhHHHHHHHh
Confidence 5667766 79998888654321 122221 468999997776554332223345566665 3
Q ss_pred CCCCEEEEcHHHHHHHHH
Q 046651 84 WDVPILGVCLGHQALGFV 101 (392)
Q Consensus 84 ~~iPILGVCLGhQ~La~a 101 (392)
.++||.+||-|-++|+.+
T Consensus 96 ~~k~i~aic~G~~~La~a 113 (184)
T d1sy7a1 96 HLKAIGATGEAVDLVAKA 113 (184)
T ss_dssp TTCEEEEETTHHHHHHHH
T ss_pred cCCceEEechHHHHHHHc
Confidence 599999999999999997
|
| >d1p5fa_ c.23.16.2 (A:) DJ-1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: DJ-1/PfpI domain: DJ-1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.07 E-value=0.0043 Score=53.12 Aligned_cols=90 Identities=19% Similarity=0.179 Sum_probs=56.6
Q ss_pred EEEEEECCCCch-H---HHHHHHHHhCCCCeEEEeCCCC---------------CHHHHHhhhcccCCcCEEEECCCCCC
Q 046651 6 RTLLIDNYDSYT-Y---NIYQELSTINGVPPVVVRNDEW---------------TWRDICRYLYEENAFDNIVISPGPGS 66 (392)
Q Consensus 6 r~LlIDnyDSyT-~---nl~q~L~~v~G~~pvVV~nd~~---------------~~eel~~~l~e~~~fDgIVISpGPGs 66 (392)
|+||+=. |.|. . -.++.|.+ +|++++++..+.. +++++.. ...||.|||.||.+.
T Consensus 3 kvlvll~-~Gfe~~E~~~p~~~l~~-ag~~v~~~s~~~~~~v~~~~g~~i~~d~~l~d~~~----~~~~D~liipGG~~~ 76 (186)
T d1p5fa_ 3 RALVILA-KGAEEMETVIPVDVMRR-AGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKK----EGPYDVVVLPGGNLG 76 (186)
T ss_dssp EEEEEEC-TTCCHHHHHHHHHHHHH-TTCEEEEEETTCSSCEECTTSCEECCSEEHHHHHH----TCCCSEEEECCCHHH
T ss_pred EEEEEeC-CCCCHHHHHHHHHHHHH-CCCEEEEEEecCCcceecCCCccccCccchhccCC----cccccEEEEecCccc
Confidence 5665543 3442 2 34566766 7999888864321 1233332 147999999777654
Q ss_pred CCCCCchhHHHHHHHH--cCCCCEEEEcHHHHHHHHH
Q 046651 67 PACPEDIGICLRVLLE--CWDVPILGVCLGHQALGFV 101 (392)
Q Consensus 67 p~~~~d~gi~~~ll~~--~~~iPILGVCLGhQ~La~a 101 (392)
+....+.....++|++ ..++||.+||-|-.+|+.+
T Consensus 77 ~~~l~~~~~l~~~lr~~~~~~k~i~aiC~G~~~La~a 113 (186)
T d1p5fa_ 77 AQNLSESAAVKEILKEQENRKGLIAAICAGPTALLAH 113 (186)
T ss_dssp HHHHHHCHHHHHHHHHHHHTTCEEEEETTTHHHHHHT
T ss_pred cccccchHHHHHHHHHhhccccceeecccCcchhhhc
Confidence 4332222334566665 3599999999999999986
|
| >d1u9ca_ c.23.16.2 (A:) GK2698 ortholog {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: DJ-1/PfpI domain: GK2698 ortholog species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.04 E-value=0.0021 Score=57.34 Aligned_cols=81 Identities=22% Similarity=0.188 Sum_probs=49.8
Q ss_pred HHHHHHHHhCCCCeEEEeCCC--------------CCHHHHHhhh--------cccCCcCEEEECCCCCCCCCCCchhHH
Q 046651 19 NIYQELSTINGVPPVVVRNDE--------------WTWRDICRYL--------YEENAFDNIVISPGPGSPACPEDIGIC 76 (392)
Q Consensus 19 nl~q~L~~v~G~~pvVV~nd~--------------~~~eel~~~l--------~e~~~fDgIVISpGPGsp~~~~d~gi~ 76 (392)
--|+.|.+ +|.+++++...- ..+.+....| .+..+||+|+|.||.|......+-...
T Consensus 30 ~P~~~l~~-aG~~V~~aS~~gg~~~~d~~~~~~~~~~~~~~~~~l~~~~~l~~v~~~dYd~v~iPGG~g~~~~l~~~~~l 108 (221)
T d1u9ca_ 30 VPYLVFQE-KGYDVKVASIQGGEVPLDPRSINEKDPSWAEAEAALKHTARLSKDDAHGFDAIFLPGGHGTMFDFPDNETL 108 (221)
T ss_dssp HHHHHHHH-TTCEEEEEESSCBCCCBCGGGSSSCCGGGHHHHHHTTSBEECCGGGGSSCSEEEECCCTTHHHHSTTCHHH
T ss_pred HHHHHHHH-CCCEEEEEecCCCcceeccCccccccchhHHHHHHhhCCCChhHCCHhHCCEEEeCCCCchhhcchhhHHH
Confidence 35677777 799999886420 1111111111 012679999998888754432222334
Q ss_pred HHHHHH--cCCCCEEEEcHHHHHHHH
Q 046651 77 LRVLLE--CWDVPILGVCLGHQALGF 100 (392)
Q Consensus 77 ~~ll~~--~~~iPILGVCLGhQ~La~ 100 (392)
.++++. ..++||-.||-|-++|..
T Consensus 109 ~~li~~~~~~~k~iaAIChgp~~l~~ 134 (221)
T d1u9ca_ 109 QYVLQQFAEDGRIIAAVCHGPSGLVN 134 (221)
T ss_dssp HHHHHHHHHTTCEEEEETTGGGGGTT
T ss_pred HHHHHHHHhccCcceeecccceeeec
Confidence 455554 359999999999887765
|
| >d1oi4a1 c.23.16.2 (A:23-192) Hypothetical protein YhbO {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: DJ-1/PfpI domain: Hypothetical protein YhbO species: Escherichia coli [TaxId: 562]
Probab=95.78 E-value=0.0052 Score=52.07 Aligned_cols=88 Identities=14% Similarity=0.245 Sum_probs=54.2
Q ss_pred EEEEEECCCCch----HHHHHHHHHhCCCCeEEEeCCCC----------------CHHHHHhhhcccCCcCEEEECCCCC
Q 046651 6 RTLLIDNYDSYT----YNIYQELSTINGVPPVVVRNDEW----------------TWRDICRYLYEENAFDNIVISPGPG 65 (392)
Q Consensus 6 r~LlIDnyDSyT----~nl~q~L~~v~G~~pvVV~nd~~----------------~~eel~~~l~e~~~fDgIVISpGPG 65 (392)
||+||= +|.|. ...++.|.+ .|.+++++....- +++++. ..+||+|||.||.|
T Consensus 3 kIail~-~dgf~~~E~~~~~~~l~~-ag~~v~~vs~~~~~~v~~~~~~~~v~~d~~l~~~~-----~~~yDalivpGG~~ 75 (170)
T d1oi4a1 3 KIAVLI-TDEFEDSEFTSPADEFRK-AGHEVITIEKQAGKTVKGKKGEASVTIDKSIDEVT-----PAEFDALLLPGGHS 75 (170)
T ss_dssp EEEEEC-CTTBCTHHHHHHHHHHHH-TTCEEEEEESSTTCEEECTTSSCEEECCEEGGGCC-----GGGCSEEEECCBTH
T ss_pred EEEEEe-CCCcCHHHHHHHHHHHHH-CCCEEEeccCCCCceeeeeccCeEEecCCcHHHCC-----hhhceEEEEccchh
Confidence 566653 34442 245667776 7888877754321 012221 25799999987764
Q ss_pred CCCCCCchhHHHHHHHH--cCCCCEEEEcHHHHHHHHH
Q 046651 66 SPACPEDIGICLRVLLE--CWDVPILGVCLGHQALGFV 101 (392)
Q Consensus 66 sp~~~~d~gi~~~ll~~--~~~iPILGVCLGhQ~La~a 101 (392)
.-....+ ..+.++|++ ..++||.+||-|-.+|+.+
T Consensus 76 ~~~l~~~-~~~~~~i~~~~~~~k~i~aiC~g~~~La~~ 112 (170)
T d1oi4a1 76 PDYLRGD-NRFVTFTRDFVNSGKPVFAICHGPQLLISA 112 (170)
T ss_dssp HHHHTTS-HHHHHHHHHHHHTTCCEEEETTTHHHHHHH
T ss_pred hhhhccC-hHHHHHHHHHhhcCCeeeecccchHHHhhh
Confidence 3221122 335566665 3599999999999999986
|
| >d2fexa1 c.23.16.2 (A:1-188) Hypothetical protein Atu0886 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: DJ-1/PfpI domain: Hypothetical protein Atu0886 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=95.57 E-value=0.011 Score=51.09 Aligned_cols=89 Identities=17% Similarity=0.175 Sum_probs=54.2
Q ss_pred EEEEEECCCCchH-HHHHHHHHhCCCCeEEEeCCCCC--------------HHHHHhhhcccCCcCEEEECCCCCCCCCC
Q 046651 6 RTLLIDNYDSYTY-NIYQELSTINGVPPVVVRNDEWT--------------WRDICRYLYEENAFDNIVISPGPGSPACP 70 (392)
Q Consensus 6 r~LlIDnyDSyT~-nl~q~L~~v~G~~pvVV~nd~~~--------------~eel~~~l~e~~~fDgIVISpGPGsp~~~ 70 (392)
-++|.|....|-+ .+...+.+..|.+++++..+.-. ++++. ..+||.|||.||.+....
T Consensus 5 ~vll~~gf~~~E~~~~~~~l~~~~g~~v~~vs~~~~~V~s~~G~~v~~d~~l~~~~-----~~~~D~liipGG~~~~~~- 78 (188)
T d2fexa1 5 AIALAQDFADWEPALLAAAARSYLGVEIVHATPDGMPVTSMGGLKVTPDTSYDALD-----PVDIDALVIPGGLSWEKG- 78 (188)
T ss_dssp EEECCTTBCTTSSHHHHHHHHHHSCCEEEEEETTSSCEECTTCCEEECSEEGGGCC-----TTTCSEEEECCBSHHHHT-
T ss_pred EEEeCCChhHHHHHHHHHHHhhcCCcEEEEEeCCCCcEEcCCCCEEeecCchHHCC-----hhhccEEEecCCcccccc-
Confidence 3455565544433 34566665579998887666431 22322 257999999777643211
Q ss_pred CchhHHHHHHHH--cCCCCEEEEcHHHHHHHHH
Q 046651 71 EDIGICLRVLLE--CWDVPILGVCLGHQALGFV 101 (392)
Q Consensus 71 ~d~gi~~~ll~~--~~~iPILGVCLGhQ~La~a 101 (392)
.+.. +.++|++ ..+.||.+||-|-.+|+.+
T Consensus 79 ~~~~-l~~~lr~~~~~~~~i~aiC~g~~~La~a 110 (188)
T d2fexa1 79 TAAD-LGGLVKRFRDRDRLVAGICAAASALGGT 110 (188)
T ss_dssp CCCC-CHHHHHHHHHTTCEEEEETHHHHHHHHT
T ss_pred ccHH-HHHHHHHHHHhCCEEEEecchhHHHHHc
Confidence 1111 2344444 2489999999999999875
|
| >d1p80a1 c.23.16.3 (A:598-753) Catalase, C-terminal domain {Escherichia coli, HPII [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: Catalase, C-terminal domain domain: Catalase, C-terminal domain species: Escherichia coli, HPII [TaxId: 562]
Probab=95.15 E-value=0.0028 Score=53.04 Aligned_cols=75 Identities=16% Similarity=0.086 Sum_probs=48.3
Q ss_pred HHHHHHHHhCCCCeEEEeCCCCC--------------HHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHH--
Q 046651 19 NIYQELSTINGVPPVVVRNDEWT--------------WRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLE-- 82 (392)
Q Consensus 19 nl~q~L~~v~G~~pvVV~nd~~~--------------~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~-- 82 (392)
.+++.|.+ .|..++++..+.-. +++... ..||+|||.||++. ....-.-..++|++
T Consensus 21 ~~~~~l~~-ag~~v~~v~~~~~~v~~~~G~~i~~d~t~~~~~~-----~~yDaliiPGG~~~--~l~~~~~~~~~i~e~~ 92 (156)
T d1p80a1 21 AILKALKA-KGVHAKLLYSRMGEVTADDGTVLPIAATFAGAPS-----LTVDAVIVPCGNIA--DIADNGDANYYLMEAY 92 (156)
T ss_dssp HHHHHHHH-HTCEEEEEESSSSEEECTTSCEEECCEETTTSCG-----GGCSEEEECCSCTH--HHHTCHHHHHHHHHHH
T ss_pred HHHHHHHH-CCCEEEEEecccccccccceeEEeeeeeeccCCc-----ccCCEEEeeCCchH--HHhcchHHHHHHHHHH
Confidence 46677776 58888777544321 222222 46999999766432 11122334677776
Q ss_pred cCCCCEEEEcHHHHHHHHH
Q 046651 83 CWDVPILGVCLGHQALGFV 101 (392)
Q Consensus 83 ~~~iPILGVCLGhQ~La~a 101 (392)
...+||-.||-|-++|+.+
T Consensus 93 ~~~K~I~aic~g~~~La~a 111 (156)
T d1p80a1 93 KHLKPIALAGDARKFKATI 111 (156)
T ss_dssp HTTCCEEEEGGGGGGGGTT
T ss_pred HcCCeEEEECchHHHHHHc
Confidence 3589999999999999866
|
| >d1ycga1 c.23.5.1 (A:251-399) Nitric oxide reductase C-terminal domain {Moorella thermoacetica [TaxId: 1525]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Flavoproteins family: Flavodoxin-related domain: Nitric oxide reductase C-terminal domain species: Moorella thermoacetica [TaxId: 1525]
Probab=93.49 E-value=0.053 Score=44.00 Aligned_cols=58 Identities=16% Similarity=0.248 Sum_probs=40.5
Q ss_pred CccEEEEEECCCCc---hHHHHHHHHHh---CCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCC
Q 046651 3 EFVRTLLIDNYDSY---TYNIYQELSTI---NGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPAC 69 (392)
Q Consensus 3 ~~~r~LlIDnyDSy---T~nl~q~L~~v---~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~ 69 (392)
|.+|+||| |+|. |..+++.|++- .|.+++++.-.+.+.+++...+ ..+|+||| |+|.-
T Consensus 1 ~k~K~lIv--Y~S~~GnT~~vA~~Ia~~l~~~g~~v~~~~~~~~~~~~~~~~~---~~~d~ii~----Gspt~ 64 (149)
T d1ycga1 1 GKAKAVIA--YDTMWLSTEKMAHALMDGLVAGGCEVKLFKLSVSDRNDVIKEI---LDARAVLV----GSPTI 64 (149)
T ss_dssp CCSEEEEE--ECCSSSHHHHHHHHHHHHHHHTTCEEEEEEGGGSCHHHHHHHH---HHCSEEEE----ECCCB
T ss_pred CCcEEEEE--EECCCcHHHHHHHHHHHHHHhcCCeeEEEEccccchHHHhhhh---hhCCeEEE----Eeecc
Confidence 56899998 4454 55566666532 6889988887777777776544 45999999 56643
|
| >d1qvwa_ c.23.16.2 (A:) Hypothetical protein Ydr533Cp {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: DJ-1/PfpI domain: Hypothetical protein Ydr533Cp species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.84 E-value=0.019 Score=51.57 Aligned_cols=49 Identities=14% Similarity=0.118 Sum_probs=33.9
Q ss_pred CCcCEEEECCCCCCCCCCCchhHHHHHHHH--cCCCCEEEEcHHHHHHHHH
Q 046651 53 NAFDNIVISPGPGSPACPEDIGICLRVLLE--CWDVPILGVCLGHQALGFV 101 (392)
Q Consensus 53 ~~fDgIVISpGPGsp~~~~d~gi~~~ll~~--~~~iPILGVCLGhQ~La~a 101 (392)
.+||+|+|.||.|......+-....+++++ ..++||-.||-|-++|..+
T Consensus 96 ~~ydav~ipGG~g~~~dl~~~~~l~~li~~~~~~gk~vaAIChGp~~L~~~ 146 (236)
T d1qvwa_ 96 DDYQIFMASAGHGTLFDYPKAKDLQDIASEIYANGGVVAAVCHGPAMFDGL 146 (236)
T ss_dssp GGCSEEEECCSTTHHHHGGGCHHHHHHHHHHHHTTCEEEEETTGGGGGTTC
T ss_pred hHCCEEEEeCCccchhcchhhhHHHHHHHHHHhcCCeEEEehhhHHHHHHH
Confidence 579999998887754432222334556655 3599999999998776543
|
| >d2ab0a1 c.23.16.2 (A:2-196) Protein ThiJ (YajL) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: DJ-1/PfpI domain: Protein ThiJ (YajL) species: Escherichia coli [TaxId: 562]
Probab=92.38 E-value=0.0093 Score=51.86 Aligned_cols=76 Identities=13% Similarity=0.173 Sum_probs=48.5
Q ss_pred HHHHHHHhCCCCeEEEeCCCC-----------------CHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHH
Q 046651 20 IYQELSTINGVPPVVVRNDEW-----------------TWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLE 82 (392)
Q Consensus 20 l~q~L~~v~G~~pvVV~nd~~-----------------~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~ 82 (392)
-++.|.+ .|++++++..+.. +++++.. .+||.|||.||.+.+....+-....+++++
T Consensus 20 p~d~L~r-ag~~v~~~s~~~~~~~~v~~~~G~~v~~d~~~~d~~~-----~d~D~liiPGG~~~~~~l~~~~~l~~~lr~ 93 (195)
T d2ab0a1 20 TIDLLVR-GGIKVTTASVASDGNLAITCSRGVKLLADAPLVEVAD-----GEYDVIVLPGGIKGAECFRDSTLLVETVKQ 93 (195)
T ss_dssp HHHHHHH-TTCEEEEEECSSTTCCEEECTTSCEEECSEEHHHHTT-----SCCSEEEECCCHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHH-CCCEEEEEEEcCCCCceEEeCCCcEeecCcChHHcCc-----ccceEEEEccccCccccccccHHHHHHHHH
Confidence 4566766 6888877753211 1344433 689999997776544332222335566665
Q ss_pred --cCCCCEEEEcHH-HHHHHHH
Q 046651 83 --CWDVPILGVCLG-HQALGFV 101 (392)
Q Consensus 83 --~~~iPILGVCLG-hQ~La~a 101 (392)
..++||.+||-| ..+|+.+
T Consensus 94 ~~~~gk~i~aiC~g~a~lLa~a 115 (195)
T d2ab0a1 94 FHRSGRIVAAICAAPATVLVPH 115 (195)
T ss_dssp HHHTTCEEEEETHHHHHHTTTT
T ss_pred Hhhccceeeeeeccchhhhhhc
Confidence 359999999999 5777654
|
| >d2pl1a1 c.23.1.1 (A:1-119) PhoP receiver domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: PhoP receiver domain species: Escherichia coli [TaxId: 562]
Probab=92.24 E-value=0.14 Score=40.34 Aligned_cols=79 Identities=16% Similarity=0.247 Sum_probs=48.8
Q ss_pred cEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHHcC
Q 046651 5 VRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLECW 84 (392)
Q Consensus 5 ~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~~~ 84 (392)
|||||||........+-+.|.. .|.++....+ -++...++ +...||.||+-= .-|. ..-+.++.++-....
T Consensus 1 mrILvVDDd~~~~~~l~~~L~~-~G~~v~~a~~----g~eal~~l-~~~~~dliilD~--~mP~-~~G~e~~~~i~~~~~ 71 (119)
T d2pl1a1 1 MRVLVVEDNALLRHHLKVQIQD-AGHQVDDAED----AKEADYYL-NEHIPDIAIVDL--GLPD-EDGLSLIRRWRSNDV 71 (119)
T ss_dssp CEEEEECSCHHHHHHHHHHHHH-TTCEEEEESS----HHHHHHHH-HHSCCSEEEECS--CCSS-SCHHHHHHHHHHTTC
T ss_pred CEEEEEeCCHHHHHHHHHHHHH-CCCEEEEECC----HHHHHHHH-Hhcccceeehhc--cCCC-chhHHHHHHHHhcCc
Confidence 8999999865566667777876 7988765543 34444433 347899999931 1121 122444545444345
Q ss_pred CCCEEEEc
Q 046651 85 DVPILGVC 92 (392)
Q Consensus 85 ~iPILGVC 92 (392)
.+|++-+-
T Consensus 72 ~~pvi~lt 79 (119)
T d2pl1a1 72 SLPILVLT 79 (119)
T ss_dssp CSCEEEEE
T ss_pred ccceEeee
Confidence 88988664
|
| >d1z0sa1 e.52.1.1 (A:1-249) Inorganic polyphosphate/ATP-NAD kinase PpnK {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: NAD kinase/diacylglycerol kinase-like superfamily: NAD kinase/diacylglycerol kinase-like family: NAD kinase-like domain: Inorganic polyphosphate/ATP-NAD kinase PpnK species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=91.10 E-value=0.091 Score=47.48 Aligned_cols=71 Identities=25% Similarity=0.362 Sum_probs=52.9
Q ss_pred cEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHH-c
Q 046651 5 VRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLE-C 83 (392)
Q Consensus 5 ~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~-~ 83 (392)
||+.+|=+-|+....+.+.|.. .++++.++.... +++ .++|-||.-||-|+ .++.++. .
T Consensus 1 mr~~iv~k~d~~~k~i~e~l~~-~~~~~~~~~~~~---~~~-------~~~D~vi~iGGDGT---------~L~a~~~~~ 60 (249)
T d1z0sa1 1 MRAAVVYKTDGHVKRIEEALKR-LEVEVELFNQPS---EEL-------ENFDFIVSVGGDGT---------ILRILQKLK 60 (249)
T ss_dssp CEEEEEESSSTTHHHHHHHHHH-TTCEEEEESSCC---GGG-------GGSSEEEEEECHHH---------HHHHHTTCS
T ss_pred CeEEEEECCchhHHHHHHHHHh-cCCeEEEecCcc---ccc-------cCCCEEEEECCcHH---------HHHHHHHhc
Confidence 8999999999999889888887 688887763322 333 34899999899875 3344433 2
Q ss_pred CCCCEEEEcHHH
Q 046651 84 WDVPILGVCLGH 95 (392)
Q Consensus 84 ~~iPILGVCLGh 95 (392)
..+|||||=.|+
T Consensus 61 ~~~PilGIn~G~ 72 (249)
T d1z0sa1 61 RCPPIFGINTGR 72 (249)
T ss_dssp SCCCEEEEECSS
T ss_pred CCCcEEEECccc
Confidence 468999999985
|
| >d1ny5a1 c.23.1.1 (A:1-137) Transcriptional activator sigm54 (NtrC1), N-terminal domain {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Transcriptional activator sigm54 (NtrC1), N-terminal domain species: Aquifex aeolicus [TaxId: 63363]
Probab=90.88 E-value=0.13 Score=41.51 Aligned_cols=79 Identities=11% Similarity=0.159 Sum_probs=48.0
Q ss_pred cEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHHcC
Q 046651 5 VRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLECW 84 (392)
Q Consensus 5 ~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~~~ 84 (392)
|||||||....+...+-+.|.. .|..++.+.+ -++....+ +...||.||+- -..-...-+.++.++-....
T Consensus 1 mkILiVDDd~~~~~~l~~~L~~-~g~~v~~a~~----~~eAl~~l-~~~~~dlvilD---~~mp~~~G~e~~~~lr~~~~ 71 (137)
T d1ny5a1 1 MNVLVIEDDKVFRGLLEEYLSM-KGIKVESAER----GKEAYKLL-SEKHFNVVLLD---LLLPDVNGLEILKWIKERSP 71 (137)
T ss_dssp CEEEEECCCHHHHHHHHHHHHH-HTCEEEEESS----HHHHHHHH-HHSCCSEEEEE---SBCSSSBHHHHHHHHHHHCT
T ss_pred CEEEEEecCHHHHHHHHHHHHH-CCCEEEEECC----HHHHHHHh-hccccccchHH---HhhhhhhHHHHHHHHHHhCC
Confidence 8999999765566667777776 6988765532 34555544 33689999982 11111122344444433356
Q ss_pred CCCEEEEc
Q 046651 85 DVPILGVC 92 (392)
Q Consensus 85 ~iPILGVC 92 (392)
++||+-+-
T Consensus 72 ~~piI~lT 79 (137)
T d1ny5a1 72 ETEVIVIT 79 (137)
T ss_dssp TSEEEEEE
T ss_pred CCCEEEEE
Confidence 89988653
|
| >d1kgsa2 c.23.1.1 (A:2-123) PhoB receiver domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: PhoB receiver domain species: Thermotoga maritima [TaxId: 2336]
Probab=90.68 E-value=0.2 Score=39.38 Aligned_cols=79 Identities=15% Similarity=0.160 Sum_probs=47.1
Q ss_pred cEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHHcC
Q 046651 5 VRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLECW 84 (392)
Q Consensus 5 ~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~~~ 84 (392)
|||||||........+-..|.. .|..++++.+- ++....+ +...||.||+--. -|. ...+.++.++-....
T Consensus 2 irILiVdDd~~~~~~l~~~L~~-~g~~v~~a~~~----~~al~~l-~~~~~dlillD~~--mp~-~~g~~~~~~lr~~~~ 72 (122)
T d1kgsa2 2 VRVLVVEDERDLADLITEALKK-EMFTVDVCYDG----EEGMYMA-LNEPFDVVILDIM--LPV-HDGWEILKSMRESGV 72 (122)
T ss_dssp CEEEEECSSHHHHHHHHHHHHH-TTCEEEEESSH----HHHHHHH-HHSCCSEEEEESC--CSS-SCHHHHHHHHHHTTC
T ss_pred CEEEEEeCCHHHHHHHHHHHHH-CCCEEEEEcch----HHHHHHH-HhhCccccccccc--ccc-chhHHHHHHHHhcCC
Confidence 8999999754555567677776 79988766543 3333333 2378999999411 121 123344444332345
Q ss_pred CCCEEEEc
Q 046651 85 DVPILGVC 92 (392)
Q Consensus 85 ~iPILGVC 92 (392)
.+||+-+.
T Consensus 73 ~~piI~lt 80 (122)
T d1kgsa2 73 NTPVLMLT 80 (122)
T ss_dssp CCCEEEEE
T ss_pred CCcEEEEc
Confidence 78887654
|
| >d1n57a_ c.23.16.2 (A:) HSP31 (HchA; YedU) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: DJ-1/PfpI domain: HSP31 (HchA; YedU) species: Escherichia coli [TaxId: 562]
Probab=90.53 E-value=0.12 Score=47.54 Aligned_cols=49 Identities=16% Similarity=0.167 Sum_probs=34.6
Q ss_pred CCcCEEEECCCCCCCCCCCchhHHHHHHHH--cCCCCEEEEcHHHHHHHHH
Q 046651 53 NAFDNIVISPGPGSPACPEDIGICLRVLLE--CWDVPILGVCLGHQALGFV 101 (392)
Q Consensus 53 ~~fDgIVISpGPGsp~~~~d~gi~~~ll~~--~~~iPILGVCLGhQ~La~a 101 (392)
.+||+|+|.||-|...+..+-....++|+. ..++||..||-|=.+|..+
T Consensus 140 ~dYdav~iPGGhG~~~dL~~~~~l~~ll~~~~~~gk~vaaICHGPa~Ll~a 190 (279)
T d1n57a_ 140 SEYAAIFVPGGHGALIGLPESQDVAAALQWAIKNDRFVISLCHGPAAFLAL 190 (279)
T ss_dssp CSEEEEEECCSGGGGSSGGGCHHHHHHHHHHHHTTCEEEEETTGGGGGGGG
T ss_pred ccccEEEecCCccchhhhhHHHHHHHHHHHHHHcCCcceeccccchhhhhc
Confidence 479999999988865543322334555554 2599999999998777544
|
| >d1ys7a2 c.23.1.1 (A:7-127) Transcriptional regulatory protein PrrA, N-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Transcriptional regulatory protein PrrA, N-terminal domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=89.81 E-value=0.27 Score=38.72 Aligned_cols=79 Identities=19% Similarity=0.240 Sum_probs=48.4
Q ss_pred cEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHHcC
Q 046651 5 VRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLECW 84 (392)
Q Consensus 5 ~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~~~ 84 (392)
+||||||........|...|+. .|.++....+- ++....+ +...||.||+--. -|. ..-+.++.++-....
T Consensus 2 PkILiVDD~~~~~~~l~~~L~~-~g~~v~~a~~~----~eal~~~-~~~~~dlvl~D~~--mP~-~~G~el~~~ir~~~~ 72 (121)
T d1ys7a2 2 PRVLVVDDDSDVLASLERGLRL-SGFEVATAVDG----AEALRSA-TENRPDAIVLDIN--MPV-LDGVSVVTALRAMDN 72 (121)
T ss_dssp CEEEEECSCHHHHHHHHHHHHH-TTCEEEEESSH----HHHHHHH-HHSCCSEEEEESS--CSS-SCHHHHHHHHHHTTC
T ss_pred CEEEEEECCHHHHHHHHHHHHH-CCCEEEEECCH----HHHHHHH-HhCCCCEEEEEee--ccC-cccHHHHHHHHhcCC
Confidence 6999999765566677788877 79887766543 3333333 3378999998311 121 223455555433345
Q ss_pred CCCEEEEc
Q 046651 85 DVPILGVC 92 (392)
Q Consensus 85 ~iPILGVC 92 (392)
++||+-+.
T Consensus 73 ~~piI~lt 80 (121)
T d1ys7a2 73 DVPVCVLS 80 (121)
T ss_dssp CCCEEEEE
T ss_pred CCEEEEEE
Confidence 78877654
|
| >d2b4aa1 c.23.1.1 (A:2-119) Hypothetical protein BH3024 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Hypothetical protein BH3024 species: Bacillus halodurans [TaxId: 86665]
Probab=88.72 E-value=0.47 Score=37.15 Aligned_cols=79 Identities=15% Similarity=0.042 Sum_probs=47.0
Q ss_pred ccEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHH-
Q 046651 4 FVRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLE- 82 (392)
Q Consensus 4 ~~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~- 82 (392)
-|||||||........+.+.|.. .|..+++..+. ++....+.+...||.||+--. -|. ..-+.++.++ ++
T Consensus 2 p~rILvVdDd~~~~~~l~~~L~~-~g~~v~~~~~~----~~al~~l~~~~~~dliilD~~--lp~-~~G~el~~~i-r~~ 72 (118)
T d2b4aa1 2 PFRVTLVEDEPSHATLIQYHLNQ-LGAEVTVHPSG----SAFFQHRSQLSTCDLLIVSDQ--LVD-LSIFSLLDIV-KEQ 72 (118)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHH-TTCEEEEESSH----HHHHHTGGGGGSCSEEEEETT--CTT-SCHHHHHHHH-TTS
T ss_pred CCEEEEEECCHHHHHHHHHHHHh-cCCCeEEECCH----HHHHHHHHhcCCCCEEEEeCC--CCC-CCHHHHHHHH-Hhc
Confidence 48999999755556667777877 79888776543 233333334457999999311 121 1223334333 33
Q ss_pred cCCCCEEEE
Q 046651 83 CWDVPILGV 91 (392)
Q Consensus 83 ~~~iPILGV 91 (392)
..++||+-+
T Consensus 73 ~~~~pii~l 81 (118)
T d2b4aa1 73 TKQPSVLIL 81 (118)
T ss_dssp SSCCEEEEE
T ss_pred CCCCcEEEE
Confidence 347887765
|
| >d1xhfa1 c.23.1.1 (A:2-122) Aerobic respiration control protein ArcA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Aerobic respiration control protein ArcA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=88.20 E-value=0.37 Score=37.81 Aligned_cols=79 Identities=11% Similarity=0.174 Sum_probs=48.2
Q ss_pred ccEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHHc
Q 046651 4 FVRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLEC 83 (392)
Q Consensus 4 ~~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~~ 83 (392)
..||||||....+-..+.+.|.. .|..++...+- ++....+ +...||.||+-- .-|. ..-+.++ +.+++.
T Consensus 2 tp~ILiVDDd~~~~~~l~~~L~~-~g~~v~~a~~~----~~al~~l-~~~~~dlii~D~--~mp~-~~G~~~~-~~~r~~ 71 (121)
T d1xhfa1 2 TPHILIVEDELVTRNTLKSIFEA-EGYDVFEATDG----AEMHQIL-SEYDINLVIMDI--NLPG-KNGLLLA-RELREQ 71 (121)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHT-TTCEEEEESSH----HHHHHHH-HHSCCSEEEECS--SCSS-SCHHHHH-HHHHHH
T ss_pred CCEEEEEECCHHHHHHHHHHHHH-CCCEEEEECCh----HHHHHHH-HhcCCCEEEeec--ccCC-ccCcHHH-HHHHhc
Confidence 36999999755555667777877 79887766543 3333333 237899999942 1222 1223334 334555
Q ss_pred CCCCEEEEc
Q 046651 84 WDVPILGVC 92 (392)
Q Consensus 84 ~~iPILGVC 92 (392)
.++||+.+-
T Consensus 72 ~~~pii~lt 80 (121)
T d1xhfa1 72 ANVALMFLT 80 (121)
T ss_dssp CCCEEEEEE
T ss_pred CCCcEEEEE
Confidence 689998663
|
| >d1krwa_ c.23.1.1 (A:) NTRC receiver domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: NTRC receiver domain species: Salmonella typhimurium [TaxId: 90371]
Probab=86.91 E-value=0.72 Score=36.04 Aligned_cols=80 Identities=11% Similarity=0.148 Sum_probs=49.0
Q ss_pred ccEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHHc
Q 046651 4 FVRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLEC 83 (392)
Q Consensus 4 ~~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~~ 83 (392)
+-+|||||........|-+.|.. .|..+....+- ++...++ +...||.||+-=. -| ...-+.++.++-+..
T Consensus 3 k~~ILIVDDd~~~~~~l~~~L~~-~g~~v~~a~~~----~~a~~~l-~~~~~dlii~D~~--mp-~~~G~el~~~l~~~~ 73 (123)
T d1krwa_ 3 RGIVWVVDDDSSIRWVLERALAG-AGLTCTTFENG----NEVLAAL-ASKTPDVLLSDIR--MP-GMDGLALLKQIKQRH 73 (123)
T ss_dssp CCEEEEESSSHHHHHHHHHHHHH-TTCEEEEESSS----HHHHHHH-TTCCCSEEEECCS--SS-SSTTHHHHHHHHHHS
T ss_pred CCEEEEEECCHHHHHHHHHHHHH-CCCEEEEeCCH----HHHHHHH-HhCCCCEEEehhh--cC-CchHHHHHHHHHHhC
Confidence 45799999765566667777776 79887765443 3444433 3478999999311 12 122344455554445
Q ss_pred CCCCEEEEc
Q 046651 84 WDVPILGVC 92 (392)
Q Consensus 84 ~~iPILGVC 92 (392)
.++||+-+.
T Consensus 74 ~~~piI~~t 82 (123)
T d1krwa_ 74 PMLPVIIMT 82 (123)
T ss_dssp SSCCEEESC
T ss_pred CCCeEEEEe
Confidence 689998544
|
| >d1zgza1 c.23.1.1 (A:2-121) TorCAD operon transcriptional regulator TorD, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: TorCAD operon transcriptional regulator TorD, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=86.91 E-value=0.51 Score=36.60 Aligned_cols=91 Identities=16% Similarity=0.203 Sum_probs=54.4
Q ss_pred cEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHHcC
Q 046651 5 VRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLECW 84 (392)
Q Consensus 5 ~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~~~ 84 (392)
+||||||....+-..+...|.. .|..+....+ .++....+ +...||.|++--. -|. ..-+.+ .+.++...
T Consensus 2 ~rILiVDDd~~~~~~l~~~L~~-~g~~v~~a~~----~~~a~~~~-~~~~~dliilD~~--mp~-~~g~~~-~~~~~~~~ 71 (120)
T d1zgza1 2 HHIVIVEDEPVTQARLQSYFTQ-EGYTVSVTAS----GAGLREIM-QNQSVDLILLDIN--LPD-ENGLML-TRALRERS 71 (120)
T ss_dssp CEEEEECSSHHHHHHHHHHHHH-TTCEEEEESS----HHHHHHHH-HHSCCSEEEEESC--CSS-SCHHHH-HHHHHTTC
T ss_pred CEEEEEeCCHHHHHHHHHHHHH-CCCEEEEECC----HHHHHHHH-HhcCCCEEeeehh--hcc-chhHHH-HHHHhccC
Confidence 6999999765566667788877 7988766543 34444433 3378999999321 121 112232 34455556
Q ss_pred CCCEEEEcH----HHHHHHHHhCCe
Q 046651 85 DVPILGVCL----GHQALGFVHGAD 105 (392)
Q Consensus 85 ~iPILGVCL----GhQ~La~a~Gg~ 105 (392)
.+||+-+.- ..+.-+...|+.
T Consensus 72 ~~piI~lt~~~~~~~~~~a~~~Ga~ 96 (120)
T d1zgza1 72 TVGIILVTGRSDRIDRIVGLEMGAD 96 (120)
T ss_dssp CCEEEEEESSCCHHHHHHHHHHTCS
T ss_pred CCeEEEEEccCCHHHHHHHHHCCCC
Confidence 899998762 233344445654
|
| >d2a9pa1 c.23.1.1 (A:2-118) DNA-binding response regulator MicA, N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: DNA-binding response regulator MicA, N-terminal domain species: Streptococcus pneumoniae [TaxId: 1313]
Probab=86.83 E-value=0.5 Score=36.70 Aligned_cols=90 Identities=21% Similarity=0.312 Sum_probs=51.7
Q ss_pred EEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHHcCC
Q 046651 6 RTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLECWD 85 (392)
Q Consensus 6 r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~~~~ 85 (392)
||||||........+-..|+. .|.+++.+.+- ++....+ +...||.||+-- .-|. ..-+.++.+ +++..+
T Consensus 2 rILiVdDd~~~~~~l~~~L~~-~g~~v~~a~~~----~eal~~~-~~~~~dlillD~--~mp~-~~G~~~~~~-i~~~~~ 71 (117)
T d2a9pa1 2 KILIVDDEKPISDIIKFNMTK-EGYEVVTAFNG----REALEQF-EAEQPDIIILDL--MLPE-IDGLEVAKT-IRKTSS 71 (117)
T ss_dssp EEEEECSCHHHHHHHHHHHHH-TTCEEEEESSH----HHHHHHH-HHHCCSEEEECS--SCSS-SCHHHHHHH-HHTTCC
T ss_pred EEEEEECCHHHHHHHHHHHHH-CCCEEEEECCH----HHHHHHH-HhcCCCEEEecc--ccCC-CCccHHHHH-HHhCCC
Confidence 799999754445556677776 79887766443 3333333 236799999831 1121 122344444 455568
Q ss_pred CCEEEEcHH----HHHHHHHhCCe
Q 046651 86 VPILGVCLG----HQALGFVHGAD 105 (392)
Q Consensus 86 iPILGVCLG----hQ~La~a~Gg~ 105 (392)
+||+-+.-- ...-+.-.|+.
T Consensus 72 ~pvI~lt~~~~~~~~~~a~~~Ga~ 95 (117)
T d2a9pa1 72 VPILMLSAKDSEFDKVIGLELGAD 95 (117)
T ss_dssp CCEEEEESCCSHHHHHHHHHHTCS
T ss_pred CCEEEEecCCCHHHHHHHHHcCCC
Confidence 999887642 23334445554
|
| >d1ydga_ c.23.5.8 (A:) Trp repressor binding protein WrbA {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Flavoproteins family: WrbA-like domain: Trp repressor binding protein WrbA species: Deinococcus radiodurans [TaxId: 1299]
Probab=86.19 E-value=0.51 Score=39.94 Aligned_cols=35 Identities=17% Similarity=0.208 Sum_probs=23.3
Q ss_pred cEEEEEECC-CCchHHHHHHHHH---hCCCCeEEEeCCC
Q 046651 5 VRTLLIDNY-DSYTYNIYQELST---INGVPPVVVRNDE 39 (392)
Q Consensus 5 ~r~LlIDny-DSyT~nl~q~L~~---v~G~~pvVV~nd~ 39 (392)
||||||-.- ...|..|.+.+++ ..|+++.+++-.+
T Consensus 3 mkilivy~S~~GnT~~la~~ia~g~~~~G~ev~~~~~~~ 41 (201)
T d1ydga_ 3 VKLAIVFYSSTGTGYAMAQEAAEAGRAAGAEVRLLKVRE 41 (201)
T ss_dssp CEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEECCC
T ss_pred cEEEEEEeCCCcHHHHHHHHHHHHHHhcCCEEEEEEccc
Confidence 899999321 1236667766654 3799998887543
|
| >d2ayxa1 c.23.1.1 (A:817-949) Sensor kinase protein RcsC, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Sensor kinase protein RcsC, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=84.89 E-value=0.83 Score=36.21 Aligned_cols=82 Identities=16% Similarity=0.214 Sum_probs=48.5
Q ss_pred CccEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHH
Q 046651 3 EFVRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLE 82 (392)
Q Consensus 3 ~~~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~ 82 (392)
+.|+|||||.....-..+...|.. .|..+....+-. +...++ ....||.|++--. -|. ..-+.++.++-..
T Consensus 7 ~~~~ILiVDD~~~~~~~l~~~L~~-~g~~v~~a~~g~----ea~~~~-~~~~~dlillD~~--mP~-~dG~el~~~ir~~ 77 (133)
T d2ayxa1 7 DDMMILVVDDHPINRRLLADQLGS-LGYQCKTANDGV----DALNVL-SKNHIDIVLSDVN--MPN-MDGYRLTQRIRQL 77 (133)
T ss_dssp CCCEEEEEESSHHHHHHHHHHHHH-HTSEEEEECCSH----HHHHHH-HHSCCSEEEEEES--SCS-SCCHHHHHHHHHH
T ss_pred CCCEEEEEECCHHHHHHHHHHHHH-cCCEEEEECcHH----HHHHHH-hccCceEEEEecc--CCC-CCHHHHHHHHHHh
Confidence 458999999754555667777776 698876554332 333322 2368999999321 121 1234444444333
Q ss_pred cCCCCEEEEcH
Q 046651 83 CWDVPILGVCL 93 (392)
Q Consensus 83 ~~~iPILGVCL 93 (392)
...+||+.+..
T Consensus 78 ~~~~pii~lt~ 88 (133)
T d2ayxa1 78 GLTLPVIGVTA 88 (133)
T ss_dssp HCCSCEEEEES
T ss_pred CCCCCEEEEec
Confidence 45889887753
|
| >d1sc6a2 c.23.12.1 (A:7-107,A:296-326) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Formate/glycerate dehydrogenase catalytic domain-like family: Formate/glycerate dehydrogenases, substrate-binding domain domain: Phosphoglycerate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=84.70 E-value=2.4 Score=33.93 Aligned_cols=52 Identities=10% Similarity=0.147 Sum_probs=38.8
Q ss_pred CccEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEEC
Q 046651 3 EFVRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVIS 61 (392)
Q Consensus 3 ~~~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVIS 61 (392)
..||||+.|+. .-...+.|++ .|...+.......+.+++...+ ..+|+|++.
T Consensus 3 ~kmKILv~d~i---~~~a~~~L~~-~g~~~v~~~~~~~~~~~l~~~~---~~~d~ii~~ 54 (132)
T d1sc6a2 3 DKIKFLLVEGV---HQKALESLRA-AGYTNIEFHKGALDDEQLKESI---RDAHFIGLR 54 (132)
T ss_dssp SSCCEEECSCC---CHHHHHHHHH-TTCCCEEECSSCCCHHHHHHHT---TSCSEEEEC
T ss_pred CCCEEEEECCC---CHHHHHHHHh-CCCEEEEeCCCCCCHHHHHHhh---cCCcEEEEe
Confidence 46999999964 4455678887 6877655555556778888877 789999884
|
| >d1w25a1 c.23.1.1 (A:2-140) Response regulator PleD, receiver domain {Caulobacter crescentus [TaxId: 155892]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Response regulator PleD, receiver domain species: Caulobacter crescentus [TaxId: 155892]
Probab=84.39 E-value=0.88 Score=36.26 Aligned_cols=92 Identities=16% Similarity=0.265 Sum_probs=53.0
Q ss_pred cEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHH--
Q 046651 5 VRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLE-- 82 (392)
Q Consensus 5 ~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~-- 82 (392)
-||||||........|...|.. .|.++.+..+- ++....+ +...||.|++-= --|. ..-+.++ +.+++
T Consensus 2 arILiVDD~~~~~~~l~~~L~~-~g~~v~~a~~~----~eal~~~-~~~~~dlil~D~--~~p~-~~G~~~~-~~ir~~~ 71 (139)
T d1w25a1 2 ARILVVDDIEANVRLLEAKLTA-EYYEVSTAMDG----PTALAMA-ARDLPDIILLDV--MMPG-MDGFTVC-RKLKDDP 71 (139)
T ss_dssp CEEEEECSSTTHHHHHHHHHHH-TTCEEEEESSH----HHHHHHH-HHHCCSEEEEES--CCSS-SCHHHHH-HHHHHST
T ss_pred CEEEEEECCHHHHHHHHHHHHH-CCCEEEEEccc----hhhhhhh-hcccceeeeeec--cccC-CCchHHH-HHhhhcc
Confidence 3899999866555667777776 79987766543 3443333 226799988820 1111 1123334 44444
Q ss_pred -cCCCCEEEEc----HHHHHHHHHhCCee
Q 046651 83 -CWDVPILGVC----LGHQALGFVHGADI 106 (392)
Q Consensus 83 -~~~iPILGVC----LGhQ~La~a~Gg~V 106 (392)
..++||+-+- .....-+...|+.-
T Consensus 72 ~~~~~piI~lt~~~~~~~~~~a~~~Ga~d 100 (139)
T d1w25a1 72 TTRHIPVVLITALDGRGDRIQGLESGASD 100 (139)
T ss_dssp TTTTSCEEEEECSSCHHHHHHHHHHTCCE
T ss_pred cccCCCEEEEEcCCCHHHHHHHHHcCCCE
Confidence 3589999875 33334444456554
|
| >d1zesa1 c.23.1.1 (A:3-123) PhoB receiver domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: PhoB receiver domain species: Escherichia coli [TaxId: 562]
Probab=83.01 E-value=0.76 Score=35.73 Aligned_cols=78 Identities=21% Similarity=0.265 Sum_probs=47.7
Q ss_pred EEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHH--c
Q 046651 6 RTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLE--C 83 (392)
Q Consensus 6 r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~--~ 83 (392)
||||||.....-..+-+.|.. .|.++....+ -++....+ +...||.||+-=. -|. ..-+..+.++-.. .
T Consensus 2 kILiVDD~~~~~~~l~~~L~~-~g~~v~~a~~----~~~al~~l-~~~~~dlil~D~~--mp~-~~G~~l~~~lr~~~~~ 72 (121)
T d1zesa1 2 RILVVEDEAPIREMVCFVLEQ-NGFQPVEAED----YDSAVNQL-NEPWPDLILLDWM--LPG-GSGIQFIKHLKRESMT 72 (121)
T ss_dssp EEEEECSCHHHHHHHHHHHHH-TTCEEEEECS----HHHHHHHS-SSSCCSEEEECSS--CTT-SCHHHHHHHHHHSTTT
T ss_pred EEEEEeCCHHHHHHHHHHHHH-CCCEEEEECC----hHHHHHHH-HccCCCEEEeecC--CCC-CCHHHHHHHHHhCccC
Confidence 799999754445556677776 7987765542 45555544 4478999998311 122 2234445444332 3
Q ss_pred CCCCEEEEc
Q 046651 84 WDVPILGVC 92 (392)
Q Consensus 84 ~~iPILGVC 92 (392)
.++||+-+.
T Consensus 73 ~~~pvi~lt 81 (121)
T d1zesa1 73 RDIPVVMLT 81 (121)
T ss_dssp TTSCEEEEE
T ss_pred CCCeEEEEE
Confidence 589999887
|
| >d1mvoa_ c.23.1.1 (A:) PhoP receiver domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: PhoP receiver domain species: Bacillus subtilis [TaxId: 1423]
Probab=82.62 E-value=0.81 Score=35.50 Aligned_cols=78 Identities=19% Similarity=0.257 Sum_probs=44.2
Q ss_pred EEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHHcCC
Q 046651 6 RTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLECWD 85 (392)
Q Consensus 6 r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~~~~ 85 (392)
||||||.....-..+-..|.. .|.++....+-+..++-+.. ..||.||+-- .-|. ..-+..+.++-.....
T Consensus 4 rILiVDDd~~~~~~l~~~L~~-~g~~v~~a~~~~~al~~l~~-----~~~dlillD~--~mp~-~~G~~~~~~~r~~~~~ 74 (121)
T d1mvoa_ 4 KILVVDDEESIVTLLQYNLER-SGYDVITASDGEEALKKAET-----EKPDLIVLDV--MLPK-LDGIEVCKQLRQQKLM 74 (121)
T ss_dssp EEEEECSCHHHHHHHHHHHHH-TTCEEEEESSHHHHHHHHHH-----HCCSEEEEES--SCSS-SCHHHHHHHHHHTTCC
T ss_pred CEEEEECCHHHHHHHHHHHHH-CCCEEEEECCHHHHHHHHhc-----ccccEEEecc--cccC-CCCchhhhhhhccCCC
Confidence 799999754445556677776 79988766544333333332 6799999821 1121 1223444444333446
Q ss_pred CCEEEEc
Q 046651 86 VPILGVC 92 (392)
Q Consensus 86 iPILGVC 92 (392)
+||+-+-
T Consensus 75 ~~ii~lt 81 (121)
T d1mvoa_ 75 FPILMLT 81 (121)
T ss_dssp CCEEEEE
T ss_pred CEEEEEE
Confidence 7776543
|
| >d1mb3a_ c.23.1.1 (A:) Cell division response regulator DivK {Caulobacter crescentus [TaxId: 155892]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Cell division response regulator DivK species: Caulobacter crescentus [TaxId: 155892]
Probab=80.16 E-value=0.98 Score=35.02 Aligned_cols=79 Identities=16% Similarity=0.222 Sum_probs=45.1
Q ss_pred cEEEEEECCCCchHHHHHHHHHhCCCCeEEEeCCCCCHHHHHhhhcccCCcCEEEECCCCCCCCCCCchhHHHHHHHH--
Q 046651 5 VRTLLIDNYDSYTYNIYQELSTINGVPPVVVRNDEWTWRDICRYLYEENAFDNIVISPGPGSPACPEDIGICLRVLLE-- 82 (392)
Q Consensus 5 ~r~LlIDnyDSyT~nl~q~L~~v~G~~pvVV~nd~~~~eel~~~l~e~~~fDgIVISpGPGsp~~~~d~gi~~~ll~~-- 82 (392)
-||||||....+-.-+-+.|.. .|.+++...+- ++...++ +...||.|++-- .-|. ..-+.++ +.|++
T Consensus 2 krILiVDD~~~~~~~l~~~L~~-~g~~v~~a~~~----~~al~~~-~~~~~dlil~D~--~mp~-~dG~el~-~~ir~~~ 71 (123)
T d1mb3a_ 2 KKVLIVEDNELNMKLFHDLLEA-QGYETLQTREG----LSALSIA-RENKPDLILMDI--QLPE-ISGLEVT-KWLKEDD 71 (123)
T ss_dssp CEEEEECSCHHHHHHHHHHHHH-TTCEEEEESCH----HHHHHHH-HHHCCSEEEEES--BCSS-SBHHHHH-HHHHHST
T ss_pred ceEEEEECCHHHHHHHHHHHHH-CCCEEEEECCH----HHHHHHH-HhCCCCEEEEEe--ccCC-CcHHHHH-HHHHhCC
Confidence 3899999754444456666665 79887655432 3444433 225799998821 1121 1223333 34444
Q ss_pred -cCCCCEEEEcH
Q 046651 83 -CWDVPILGVCL 93 (392)
Q Consensus 83 -~~~iPILGVCL 93 (392)
..++||+.+.-
T Consensus 72 ~~~~iPii~lt~ 83 (123)
T d1mb3a_ 72 DLAHIPVVAVTA 83 (123)
T ss_dssp TTTTSCEEEEC-
T ss_pred CcCCCCeEEEEE
Confidence 25899988873
|