Citrus Sinensis ID: 046655

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190----
Protein Sequence
MAPAASTVSRLVVIIILINVGAISDTTIFAIASAAGLLSSPKLLEREALLATGWWVNNWATGNYTSYHCKWTGVSCNSAGSVIGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLSDNYLSGYIPPTLGRLSKLEILNLSSNDLY
Secondary Structure (PSIPRED)
cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHcccccccccccccccccccccccccccccccEEEEEEccccccccEEEEccccccccccccEEEccccccccccccHHHHccccccEEEcccccccccccHHHHccccccEEEcccccccccccccccccccccEEEccccccc
Secondary Structure Prediction (SSPRO)
ccccHccHHHHEEEEccHHHHccHccEEEEccccccccccHHHHHHHHccccccHccccccccccccccccEEEcccccccEEEEEEEEcccccccccccHHHHcccHcccEEEEcccccccccccHHHcccccccEEEcccccccccccHHHccccccEEEEEccccccccccHHHccccccEEEEccccccc
Coil and Loop (DISEMBL)
MAPAASTVSRLVVIIILINVGAISDTTIFAIASAagllsspkLLEREALLATGwwvnnwatgnytsyhckwtgvscnsagsVIGVSLLwyendnitgelgrfkfscfpnlksfkihsnyllsgsipSEIAAVSMLQtlelpsssltgiiplemgrlrnlvhldlsdnylsgyipptlgrlsKLEILnlssndly
Flexible Loop (DISEMBL)
MAPAASTVSRLVVIIILINVGAISDTTIFAIASAAGLLSSPKLLEREALLATGWWVNNWATGNYTSYHCKWTGVSCNSAGSVIGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLSDNYLSGyipptlgrlskleilnlssndly
Low Complexity Region (SEG)
MAPAASTVSRLVVIIILINVGAISDTTIFAIASAAGLLSSPKLLEREALLATGWWVNNWATGNYTSYHCKWTGVSCNSAGSVIGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLSDNYLSGYIPPTLGRLSKLEILNLSSNDLY
Disordered region (IsUnstruct)
*******VSRLVVIIILINVGAISDTTIFAIASAAGLLSSPKLLEREALLATGWWVNNWATGNYTSYHCKWTGVSCNSAGSVIGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLSDNYLSGYIPPTLGRLSKLEILN*******
Disordered Region (DISOPRED)
***********VVIIILINVGAISDTTIFAIASA**************LLATGWWVNNWATGNYTSYHCKWTGVSCNSAGSVIGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLSDNYLSGYIPPTLGRLSKLEILNLSSNDLY
Disordered Region (DISEMBL)
********SRLVVIIILINVGAISDTTIFAIASAAGLLSSPKLLEREALLATGWWVNNWATGNYTSYHCKWTGVSCNSAGSVIGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLSDNYLSGYIPPTLGRLSKLEILNLSSNDLY
Disordered Region (DISPRO)
MAPAASTVSRLVVIIILINVGAISDTTIFAIASAAGLLSSPKLLEREALLATGWWVNNWATGNYTSYHCKWTGVSCNSAGSVIGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLSDNYLSGYIPPTLGRLSKLEILNLSSNDL*
Transmembrane Helix (TMHMM)
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAPAASTVSRLVVIIILINVGAISDTTIFAIASAAGLLSSPKLLEREALLATGWWVNNWATGNYTSYHCKWTGVSCNSAGSVIGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLSDNYLSGYIPPTLGRLSKLEILNLSSNDLY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	194	2.2.26 [Sep-21-2011]
Q94F62	615	BRASSINOSTEROID INSENSITI	yes	no	0.618	0.195	0.384	3e-15
Q9LP24	1120	Probable leucine-rich rep	no	no	0.804	0.139	0.369	1e-13
Q9FL51	872	Probably inactive leucine	no	no	0.680	0.151	0.300	4e-13
C0LGF4	591	LRR receptor-like serine/	no	no	0.695	0.228	0.331	5e-13
Q9XIC7	628	Somatic embryogenesis rec	no	no	0.597	0.184	0.364	1e-12
Q0WVM4	634	Probable LRR receptor-lik	no	no	0.902	0.276	0.312	3e-12
Q42371	976	LRR receptor-like serine/	no	no	0.675	0.134	0.367	4e-12
C0LGQ5	1249	LRR receptor-like serine/	no	no	0.659	0.102	0.372	5e-12
Q8VZG8	1045	Probable LRR receptor-lik	no	no	0.623	0.115	0.337	5e-12
Q9SGP2	996	Receptor-like protein kin	no	no	0.798	0.155	0.315	6e-12

>sp|Q94F62|BAK1_ARATH BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 OS=Arabidopsis thaliana GN=BAK1 PE=1 SV=2

 Score = 81.6 bits (200), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 48/125 (38%), Positives = 79/125 (63%), Gaps = 5/125 (4%)

Query: 69  CKWTGVSCNSAGSVIGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSE 128
           C W  V+CNS  SV  V L    N N++G+L   +    PNL+  +++SN + +G+IP +
Sbjct: 57  CTWFHVTCNSDNSVTRVDL---GNANLSGQL-VMQLGQLPNLQYLELYSNNI-TGTIPEQ 111

Query: 129 IAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLSDNYLSGYIPPTLGRLSKLEILNL 188
           +  ++ L +L+L  ++L+G IP  +GRL+ L  L L++N LSG IP +L  +  L++L+L
Sbjct: 112 LGNLTELVSLDLYLNNLSGPIPSTLGRLKKLRFLRLNNNSLSGEIPRSLTAVLTLQVLDL 171

Query: 189 SSNDL 193
           S+N L
Sbjct: 172 SNNPL 176

Dual specificity kinase acting on both serine/threonine-and tyrosine-containing substrates. Controls the expression of genes associated with innate immunity in the absence of pathogens or elicitors. Involved in brassinosteroid (BR) signal transduction. Phosphorylates BRI1. May be involved in changing the equilibrium between plasma membrane-located BRI1 homodimers and endocytosed BRI1-BAK1 heterodimers. Interaction with MSBP1 stimulates the endocytosis of BAK1 and suppresses brassinosteroid signaling. Acts in pathogen-associated molecular pattern (PAMP)-triggered immunity (PTI) via its interaction with FLS2 and the phosphorylation of BIK1. Involved in programmed cell death (PCD) control. Positively regulates the BR-dependent plant growth pathway and negatively regulates the BR-independent cell-death pathway.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|Q9LP24|Y1571_ARATH Probable leucine-rich repeat receptor-like protein kinase At1g35710 OS=Arabidopsis thaliana GN=At1g35710 PE=2 SV=1

 Score = 76.3 bits (186), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 61/165 (36%), Positives = 82/165 (49%), Gaps = 9/165 (5%)

Query: 30  AIASAAGLLSSPKLLEREALLATGWWVNNWATGNYTSYHC-KWTGVSCNSAGSVIGVSLL 88
            IA A  LL         + L++  WV++  T   TS+ C  W GVSCNS GS+  ++L 
Sbjct: 30  TIAEANALLKWKSTFTNSSKLSS--WVHDANTN--TSFSCTSWYGVSCNSRGSIEELNL- 84

Query: 89  WYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGI 148
              N  I G    F F    NL    +  N LLSG+IP +   +S L   +L ++ LTG 
Sbjct: 85  --TNTGIEGTFQDFPFISLSNLAYVDLSMN-LLSGTIPPQFGNLSKLIYFDLSTNHLTGE 141

Query: 149 IPLEMGRLRNLVHLDLSDNYLSGYIPPTLGRLSKLEILNLSSNDL 193
           I   +G L+NL  L L  NYL+  IP  LG +  +  L LS N L
Sbjct: 142 ISPSLGNLKNLTVLYLHQNYLTSVIPSELGNMESMTDLALSQNKL 186

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FL51|Y5694_ARATH Probably inactive leucine-rich repeat receptor-like protein kinase At5g06940 OS=Arabidopsis thaliana GN=At5g06940 PE=3 SV=1

 Score = 74.7 bits (182), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 49/163 (30%), Positives = 87/163 (53%), Gaps = 31/163 (19%)

Query: 52  TGWWVNNWATGNYTSYHCKWTGVSCNSAGSVIGVSLLWYENDNITGELGR---------- 101
           +GW+         +S+HC WTG++C  A ++  VS +  ++ N++GE+            
Sbjct: 51  SGWF------NTSSSHHCNWTGITCTRAPTLY-VSSINLQSLNLSGEISDSICDLPYLTH 103

Query: 102 -------------FKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGI 148
                         + S    L++  + SN L+ G+IP +I+  S L+ ++  S+ + G+
Sbjct: 104 LDLSLNFFNQPIPLQLSRCVTLETLNLSSN-LIWGTIPDQISEFSSLKVIDFSSNHVEGM 162

Query: 149 IPLEMGRLRNLVHLDLSDNYLSGYIPPTLGRLSKLEILNLSSN 191
           IP ++G L NL  L+L  N L+G +PP +G+LS+L +L+LS N
Sbjct: 163 IPEDLGLLFNLQVLNLGSNLLTGIVPPAIGKLSELVVLDLSEN 205

Arabidopsis thaliana (taxid: 3702)

>sp|C0LGF4|FEI1_ARATH LRR receptor-like serine/threonine-protein kinase FEI 1 OS=Arabidopsis thaliana GN=FEI1 PE=1 SV=1

 Score = 73.9 bits (180), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 50/151 (33%), Positives = 83/151 (54%), Gaps = 16/151 (10%)

Query: 46  REALLATGWWVNNWATGNYTSYHCKWTGVSCNSA-GSVIGVSLLWYENDNITG----ELG 100
           R A+  +  +++ W   +     C W GV+C++    VI ++L +++   I G    ++G
Sbjct: 41  RNAVTRSDSFIHQWRPEDPDP--CNWNGVTCDAKTKRVITLNLTYHK---IMGPLPPDIG 95

Query: 101 RFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLV 160
           +       +L+   +H+N L  G+IP+ +   + L+ + L S+  TG IP EMG L  L 
Sbjct: 96  KLD-----HLRLLMLHNNALY-GAIPTALGNCTALEEIHLQSNYFTGPIPAEMGDLPGLQ 149

Query: 161 HLDLSDNYLSGYIPPTLGRLSKLEILNLSSN 191
            LD+S N LSG IP +LG+L KL   N+S+N
Sbjct: 150 KLDMSSNTLSGPIPASLGQLKKLSNFNVSNN 180

Involved in the signaling pathway that regulates cell wall function, including cellulose biosynthesis, likely via an 1-aminocyclopropane-1-carboxylic acid (ACC)-mediated signal (a precursor of ethylene).

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9XIC7|SERK2_ARATH Somatic embryogenesis receptor kinase 2 OS=Arabidopsis thaliana GN=SERK2 PE=1 SV=1

 Score = 73.2 bits (178), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 47/129 (36%), Positives = 79/129 (61%), Gaps = 13/129 (10%)

Query: 69  CKWTGVSCNSAGSVIGVSLLWYENDNITGEL----GRFKFSCFPNLKSFKIHSNYLLSGS 124
           C W  V+CN+  SVI V L    N +++G+L    G+ K     NL+  +++SN + +G 
Sbjct: 61  CTWFHVTCNNENSVIRVDL---GNADLSGQLVPQLGQLK-----NLQYLELYSNNI-TGP 111

Query: 125 IPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLSDNYLSGYIPPTLGRLSKLE 184
           +PS++  ++ L +L+L  +S TG IP  +G+L  L  L L++N L+G IP +L  +  L+
Sbjct: 112 VPSDLGNLTNLVSLDLYLNSFTGPIPDSLGKLFKLRFLRLNNNSLTGPIPMSLTNIMTLQ 171

Query: 185 ILNLSSNDL 193
           +L+LS+N L
Sbjct: 172 VLDLSNNRL 180

Serine/threonine-kinase involved in brassinosteroid-dependent and -independent signaling pathways. Acts redundantly with SERK1 as a control point for sporophytic development controlling male gametophyte production.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q0WVM4|Y2239_ARATH Probable LRR receptor-like serine/threonine-protein kinase At2g23950 OS=Arabidopsis thaliana GN=At2g23950 PE=2 SV=1

 Score = 71.2 bits (173), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 59/189 (31%), Positives = 96/189 (50%), Gaps = 14/189 (7%)

Query: 12  VVIIILINVGAISDTTIFAIASAAGLLSSPKLLEREALLATGWWVN-------NWATGNY 64
           +V++ LI +   S   +        L S P+  E EAL+     ++       NW    +
Sbjct: 1   MVVMKLITMKIFSVLLLLCFFVTCSLSSEPRNPEVEALINIKNELHDPHGVFKNW--DEF 58

Query: 65  TSYHCKWTGVSCNSAGSVIGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGS 124
           +   C WT +SC+S   VIG   L   + +++G L         NL+   + +N + SG 
Sbjct: 59  SVDPCSWTMISCSSDNLVIG---LGAPSQSLSGTLSG-SIGNLTNLRQVSLQNNNI-SGK 113

Query: 125 IPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLSDNYLSGYIPPTLGRLSKLE 184
           IP EI ++  LQTL+L ++  +G IP  + +L NL +L L++N LSG  P +L ++  L 
Sbjct: 114 IPPEICSLPKLQTLDLSNNRFSGEIPGSVNQLSNLQYLRLNNNSLSGPFPASLSQIPHLS 173

Query: 185 ILNLSSNDL 193
            L+LS N+L
Sbjct: 174 FLDLSYNNL 182

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q42371|ERECT_ARATH LRR receptor-like serine/threonine-protein kinase ERECTA OS=Arabidopsis thaliana GN=ERECTA PE=1 SV=1

 Score = 71.2 bits (173), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 50/136 (36%), Positives = 70/136 (51%), Gaps = 5/136 (3%)

Query: 58  NWATGNYTSYHCKWTGVSCNSAGSVIGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHS 117
           +W T   + Y C W GVSC +      V  L   + N+ GE+         +L S  +  
Sbjct: 46  DWTTSPSSDY-CVWRGVSCENV--TFNVVALNLSDLNLDGEISP-AIGDLKSLLSIDLRG 101

Query: 118 NYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLSDNYLSGYIPPTL 177
           N L SG IP EI   S LQ L+L  + L+G IP  + +L+ L  L L +N L G IP TL
Sbjct: 102 NRL-SGQIPDEIGDCSSLQNLDLSFNELSGDIPFSISKLKQLEQLILKNNQLIGPIPSTL 160

Query: 178 GRLSKLEILNLSSNDL 193
            ++  L+IL+L+ N L
Sbjct: 161 SQIPNLKILDLAQNKL 176

Receptor kinase that, together with ERL1 and ERL2, regulates aerial architecture, including inflorescence (e.g. shoot apical meristem-originating organ shape, elongation of the internode and pedicels, and adaxial-abaxial polarity), and stomatal patterning (e.g. density and clustering), probably by tuning cell division and expansion. Modulates plant transpiration efficiency by controlling stomatal density, leaf photosynthetic capacity, epidermal cell expansion, mesophyll cell proliferation and cell-cell contact. Probable major trait regulating canalization (maintenance of phenotype despite varying environment) in many aspect of the plant physiology (e.g. plant morphology, light-dependent leaves number, branch number, flowering time, phytate and mineral concentrations) by transducing microenvironmental variation into phenotypic differentiation (ecological amplifier). May maintain development integrity in heat stress conditions. Regulates cell wall composition and structure. Confers resistance to the pathogenic bacteria Ralstonia solanacearum and to the necrotrophic fungi Plectosphaerella cucumerina and Pythium irregulare, and required for callose deposition upon infection. Resistance to P.cucumerina seems cell wall-mediated.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGQ5|GSO1_ARATH LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1

 Score = 70.9 bits (172), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 51/137 (37%), Positives = 79/137 (57%), Gaps = 9/137 (6%)

Query: 56  VNNWATGNYTSYHCKWTGVSCNSAG--SVIGVSLLWYENDNITGELGRFKFSCFPNLKSF 113
           +  W + N    +C WTGV+C++ G   VI ++L       +TG +  + F  F NL   
Sbjct: 47  LRQWNSDNIN--YCSWTGVTCDNTGLFRVIALNLTGL---GLTGSISPW-FGRFDNLIHL 100

Query: 114 KIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLSDNYLSGYI 173
            + SN L+ G IP+ ++ ++ L++L L S+ LTG IP ++G L N+  L + DN L G I
Sbjct: 101 DLSSNNLV-GPIPTALSNLTSLESLFLFSNQLTGEIPSQLGSLVNIRSLRIGDNELVGDI 159

Query: 174 PPTLGRLSKLEILNLSS 190
           P TLG L  L++L L+S
Sbjct: 160 PETLGNLVNLQMLALAS 176

Together with GSO2, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q8VZG8|Y4885_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g08850 OS=Arabidopsis thaliana GN=At4g08850 PE=1 SV=3

 Score = 70.9 bits (172), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 50/148 (33%), Positives = 67/148 (45%), Gaps = 27/148 (18%)

Query: 59  WATGNYTSYHCKWTGVSCNSAGSVIGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSN 118
           W   N +S+   W GV+C S GS+I ++L    N  I G    F FS  PNL    +  N
Sbjct: 73  WVNPNTSSFCTSWYGVAC-SLGSIIRLNLT---NTGIEGTFEDFPFSSLPNLTFVDLSMN 128

Query: 119 YL-----------------------LSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGR 155
                                    L G IP E+  +S L TL L  + L G IP E+GR
Sbjct: 129 RFSGTISPLWGRFSKLEYFDLSINQLVGEIPPELGDLSNLDTLHLVENKLNGSIPSEIGR 188

Query: 156 LRNLVHLDLSDNYLSGYIPPTLGRLSKL 183
           L  +  + + DN L+G IP + G L+KL
Sbjct: 189 LTKVTEIAIYDNLLTGPIPSSFGNLTKL 216

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9SGP2|HSL1_ARATH Receptor-like protein kinase HSL1 OS=Arabidopsis thaliana GN=HSL1 PE=2 SV=1

 Score = 70.5 bits (171), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 52/165 (31%), Positives = 86/165 (52%), Gaps = 10/165 (6%)

Query: 27  TIFAIASAAGLLSSPKLLEREALLATGWWVNNWATGNYTSYHCKWTGVSCNSAGSVIGVS 86
           T+F++     +L   KL    +L     ++++W + + +   C+W+GVSC  AG    V+
Sbjct: 12  TVFSLNQDGFILQQVKL----SLDDPDSYLSSWNSNDASP--CRWSGVSC--AGDFSSVT 63

Query: 87  LLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLT 146
            +   + N+ G           NL    +++N + S ++P  IAA   LQTL+L  + LT
Sbjct: 64  SVDLSSANLAGPFPSV-ICRLSNLAHLSLYNNSINS-TLPLNIAACKSLQTLDLSQNLLT 121

Query: 147 GIIPLEMGRLRNLVHLDLSDNYLSGYIPPTLGRLSKLEILNLSSN 191
           G +P  +  +  LVHLDL+ N  SG IP + G+   LE+L+L  N
Sbjct: 122 GELPQTLADIPTLVHLDLTGNNFSGDIPASFGKFENLEVLSLVYN 166

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	194
224065665	847	predicted protein [Populus trichocarpa]	0.835	0.191	0.409	6e-23
224110038	964	predicted protein [Populus trichocarpa]	0.819	0.164	0.411	2e-22
225452751	878	PREDICTED: probable leucine-rich repeat	0.855	0.189	0.375	1e-21
224065673	964	predicted protein [Populus trichocarpa]	0.819	0.164	0.4	2e-21
224110020	1048	predicted protein [Populus trichocarpa]	0.819	0.151	0.405	6e-21
147769855	1643	hypothetical protein VITISV_039063 [Viti	0.809	0.095	0.411	8e-21
224110024	827	predicted protein [Populus trichocarpa]	0.829	0.194	0.404	9e-21
357501751	799	Receptor kinase [Medicago truncatula] gi	0.804	0.195	0.390	3e-20
225452749	783	PREDICTED: probable LRR receptor-like se	0.891	0.220	0.334	4e-20
359488981	757	PREDICTED: probable LRR receptor-like se	0.881	0.225	0.333	6e-20

>gi|224065665|ref|XP_002301910.1| predicted protein [Populus trichocarpa] gi|222843636|gb|EEE81183.1| predicted protein [Populus trichocarpa]

 Score =  112 bits (281), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 70/171 (40%), Positives = 98/171 (57%), Gaps = 9/171 (5%)

Query: 23  ISDTTIFAIASAAGLLSSPKLLEREALLATGWWVNNWATGNYTSYHCKWTGVSCNSAGSV 82
           +S T + A    + LL+S    E +ALL +GWW +     N TS+ CKWTG+ C+ AGS+
Sbjct: 25  VSCTGLVAALDDSALLAS----EGKALLESGWWSD---YRNLTSHRCKWTGIVCDRAGSI 77

Query: 83  IGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPS 142
             +S    E   +  + G+  FSCF NL    + +N+ LSGSIP +I+ +  L+ L L S
Sbjct: 78  TDISP-PPEFLKVGNKFGKMNFSCFSNLARLHL-ANHELSGSIPPQISILPQLRYLNLSS 135

Query: 143 SSLTGIIPLEMGRLRNLVHLDLSDNYLSGYIPPTLGRLSKLEILNLSSNDL 193
           ++L G +P  +G L  LV LD S N     IPP LG L  LEIL+ S+N L
Sbjct: 136 NNLAGELPSSLGNLSRLVELDFSSNNFINSIPPELGNLKNLEILDASNNRL 186

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224110038|ref|XP_002333164.1| predicted protein [Populus trichocarpa] gi|222835017|gb|EEE73466.1| predicted protein [Populus trichocarpa]

 Score =  111 bits (277), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 70/170 (41%), Positives = 99/170 (58%), Gaps = 11/170 (6%)

Query: 23  ISDTTIFAIASAAGLLSSPKLLEREALLATGWWVNNWATGNYTSYHCKWTGVSCNSAGSV 82
           +S T + A    + LL+S    E +ALL +GWW +     N TS+ CKWTG+ C+ AGS+
Sbjct: 25  VSSTGLVAALDDSALLAS----EGKALLESGWWSD---YSNLTSHRCKWTGIVCDGAGSI 77

Query: 83  IGVSLLWYENDNITGELGRFKFSCFPNLKSFKIH-SNYLLSGSIPSEIAAVSMLQTLELP 141
             +S    E   +  + G+  FSCF NL   ++H +N+ LSGSIP +I+ +  L+ L L 
Sbjct: 78  TKISP-PPEFLKVGNKFGKMNFSCFSNL--VRLHLANHELSGSIPPQISILPQLRYLNLS 134

Query: 142 SSSLTGIIPLEMGRLRNLVHLDLSDNYLSGYIPPTLGRLSKLEILNLSSN 191
           S++L G +P  +G L  LV LD S N L+  IPP LG L  L  L+LS N
Sbjct: 135 SNNLAGELPSSLGNLSRLVELDFSSNNLTNSIPPELGNLKNLVTLSLSDN 184

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225452751|ref|XP_002277606.1| PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710-like [Vitis vinifera]

 Score =  108 bits (269), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 68/181 (37%), Positives = 104/181 (57%), Gaps = 15/181 (8%)

Query: 15  IILINVGAISDTTIFAIASAAGLLSSPK--LLEREALLATGWWVNNWATGNYTSYHCKWT 72
           ++++ + +I    +F++A+A   LSSP     E EAL +TGWW       N TS HC W 
Sbjct: 11  VVVVTITSIMMIMLFSLANA---LSSPSSSTDEAEALRSTGWW-------NSTSAHCNWD 60

Query: 73  GVSCNSAGSVIGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAV 132
           GV CN+AG V  ++  ++++    GEL + +FS FP+L    + S+  L+GSIP +I  +
Sbjct: 61  GVYCNNAGRVTQIA--FFDSGKKLGELSKLEFSSFPSLVELFL-SDCGLNGSIPHQIGTL 117

Query: 133 SMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLSDNYLSGYIPPTLGRLSKLEILNLSSND 192
           + L  L LP ++LTG +PL +  L  L +L L  N L G IPP +G++  L    L  N+
Sbjct: 118 TQLIILYLPLNNLTGELPLSLANLTQLEYLSLHSNRLHGSIPPEIGKMKNLIYFILHDNN 177

Query: 193 L 193
           L
Sbjct: 178 L 178

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224065673|ref|XP_002301914.1| predicted protein [Populus trichocarpa] gi|222843640|gb|EEE81187.1| predicted protein [Populus trichocarpa]

 Score =  108 bits (269), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 68/170 (40%), Positives = 98/170 (57%), Gaps = 11/170 (6%)

Query: 23  ISDTTIFAIASAAGLLSSPKLLEREALLATGWWVNNWATGNYTSYHCKWTGVSCNSAGSV 82
           +S T + A    + LL+S    E +AL+ +GWW +     N TS+ C WTG+ C+ AGS+
Sbjct: 25  VSSTGLVAALDDSALLAS----EGKALVESGWWSD---YSNLTSHRCNWTGIVCDGAGSI 77

Query: 83  IGVSLLWYENDNITGELGRFKFSCFPNLKSFKIH-SNYLLSGSIPSEIAAVSMLQTLELP 141
             +S    E   +  + G+  FSCF NL   ++H +N+ LSGSIP +I+ +  L+ L L 
Sbjct: 78  TKISP-PPEFLKVGNKFGKMNFSCFSNL--VRLHLANHELSGSIPPQISILPQLRYLNLS 134

Query: 142 SSSLTGIIPLEMGRLRNLVHLDLSDNYLSGYIPPTLGRLSKLEILNLSSN 191
           S++L G +P  +G L  LV LD S N L+  IPP LG L  L  L+LS N
Sbjct: 135 SNNLAGELPSSLGNLSRLVELDFSSNNLTNSIPPELGNLKNLVTLSLSDN 184

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224110020|ref|XP_002333160.1| predicted protein [Populus trichocarpa] gi|222835013|gb|EEE73462.1| predicted protein [Populus trichocarpa]

 Score =  106 bits (264), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 69/170 (40%), Positives = 96/170 (56%), Gaps = 11/170 (6%)

Query: 23  ISDTTIFAIASAAGLLSSPKLLEREALLATGWWVNNWATGNYTSYHCKWTGVSCNSAGSV 82
           +S T + A    + LL+S    E +ALL +GWW +     N TS+ CKWTG+ C+ AGS+
Sbjct: 25  VSSTGLVAALDDSALLAS----EGKALLESGWWSD---YSNLTSHRCKWTGIVCDRAGSI 77

Query: 83  IGVSLLWYENDNITGELGRFKFSCFPNLKSFKIH-SNYLLSGSIPSEIAAVSMLQTLELP 141
             +S    E   +  + G+  FSCF NL   ++H +N+ LSGSIP +I+ +  L+ L L 
Sbjct: 78  TEISP-PPEFLKVGNKFGKMNFSCFSNL--VRLHLANHELSGSIPHQISILPQLRYLNLS 134

Query: 142 SSSLTGIIPLEMGRLRNLVHLDLSDNYLSGYIPPTLGRLSKLEILNLSSN 191
           S+ L G +P  +G L  LV LD S N     IPP LG L  L  L+LS N
Sbjct: 135 SNYLAGELPSSLGNLSRLVELDFSSNNFINSIPPELGNLKSLVTLSLSYN 184

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147769855|emb|CAN61272.1| hypothetical protein VITISV_039063 [Vitis vinifera]

 Score =  105 bits (263), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 67/163 (41%), Positives = 94/163 (57%), Gaps = 6/163 (3%)

Query: 32  ASAAGLLSSPK-LLEREALLATGWWVNNWATGNYTSYHCKWTGVSCNSAGSVIGVSLLWY 90
           + AA + SSP+   E EAL ++G W  +W +    S HC W+GV+CN AG VI +  L  
Sbjct: 25  SHAAPIYSSPQSQAEAEALRSSGCW--SWESN--ISNHCHWSGVTCNEAGHVIKIMNLMS 80

Query: 91  ENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIP 150
            +  +     ++KFS FP+L    + S   L+GSIP +I  ++ L  L+L  + L G IP
Sbjct: 81  CHTAVPSGFSKWKFSSFPSLIHLDL-SICGLTGSIPDQIGNLANLIYLDLSYNQLHGNIP 139

Query: 151 LEMGRLRNLVHLDLSDNYLSGYIPPTLGRLSKLEILNLSSNDL 193
            ++G L  L +LDLS N LSG IP +LG L KL  LNL  N +
Sbjct: 140 YQLGALTKLTYLDLSYNALSGVIPSSLGYLIKLTSLNLVRNQI 182

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224110024|ref|XP_002333161.1| predicted protein [Populus trichocarpa] gi|222835014|gb|EEE73463.1| predicted protein [Populus trichocarpa]

 Score =  105 bits (262), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 70/173 (40%), Positives = 97/173 (56%), Gaps = 12/173 (6%)

Query: 23  ISDTTIFAIASAAGLLSSPKLLEREALLATGWWVNNWATGNYTSYHCK-WTGVSCNSAGS 81
           +S T + A    + LL+S    E +ALL +GWW       N TS+ CK W G+ CN AGS
Sbjct: 25  VSSTGLVAALDDSALLAS----EVKALLESGWWSQ---YSNLTSHRCKYWPGIFCNRAGS 77

Query: 82  VIGVSLLWYENDNITGELGRFKFSCFPNLKSFKIH-SNYLLSGSIPSEIAAVSMLQTLEL 140
           +  +S    E   +  + G+  FSCF NL   ++H  N+ L+GSIP +I+ +  L+ L L
Sbjct: 78  ITKISP-PPEFLKVGNKFGKMNFSCFSNL--VRLHLPNHELNGSIPPQISILPQLRYLNL 134

Query: 141 PSSSLTGIIPLEMGRLRNLVHLDLSDNYLSGYIPPTLGRLSKLEILNLSSNDL 193
            S++L G +P  +G L  LV LD S N     IPP LG L  LEIL+ S+N L
Sbjct: 135 SSNNLAGELPSSLGNLSRLVELDFSSNNFINSIPPELGNLKNLEILDASNNRL 187

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357501751|ref|XP_003621164.1| Receptor kinase [Medicago truncatula] gi|355496179|gb|AES77382.1| Receptor kinase [Medicago truncatula]

 Score =  103 bits (257), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 64/164 (39%), Positives = 101/164 (61%), Gaps = 8/164 (4%)

Query: 30  AIASAAGLLSSPKLLEREA--LLATGWWVNNWATGNYTSYHCKWTGVSCNSAGSVIGVSL 87
           AI S A   SSP  LE+EA  L+ +GWW N++   N+    C+W G++CN+ GS+  +SL
Sbjct: 14  AIMSVAASKSSPLQLEKEAQALVNSGWW-NDFT--NHAPTRCQWPGITCNNEGSITNISL 70

Query: 88  LWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTG 147
                  +  + G+F FS F NL    + S+ ++ G+IP E+A +S L  L++ S+ + G
Sbjct: 71  --PPEIQLGDKFGKFHFSSFTNLVHLNLASHGII-GNIPFELATLSKLIFLDVSSNDIEG 127

Query: 148 IIPLEMGRLRNLVHLDLSDNYLSGYIPPTLGRLSKLEILNLSSN 191
            IP  +  L+NL+ L+LS N L+G IP ++G+L+KL  L+L +N
Sbjct: 128 HIPSNIWSLKNLITLNLSRNKLNGSIPSSIGQLTKLTFLHLDAN 171

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225452749|ref|XP_002277477.1| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850-like [Vitis vinifera]

 Score =  103 bits (257), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 78/233 (33%), Positives = 110/233 (47%), Gaps = 60/233 (25%)

Query: 12  VVIIILINVGAISDTTIFAIASAAGLLSSPK--LLEREALLATGWWVNNWATGNYTSYHC 69
           ++I   + V  I+ T +  +   A  +SSP     E EAL +TGWW       N TS HC
Sbjct: 5   IIIFTAVVVVTITSTMMIMLFPLANAISSPSSSTDEAEALRSTGWW-------NSTSAHC 57

Query: 70  KWTGVSCNSAGSVIGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEI 129
            W GV CN+AG V G++L  Y +    GEL +  FS FP+L    + S+  L+GSIP +I
Sbjct: 58  HWDGVFCNNAGRVTGIAL--YGSGKELGELSKLDFSSFPSLVELSL-SDCGLNGSIPHQI 114

Query: 130 AAVSMLQTLELPSSSLTGIIPL------------------------EMGRLRNLVHLDLS 165
             ++ L  L L  ++LTG +PL                        E+G+++NL  LDL 
Sbjct: 115 GTLTQLTYLSLGLNNLTGELPLSLANLTQLEVLSFYSNRLHGSILPEIGKMKNLTVLDLG 174

Query: 166 DNYL------------------------SGYIPPTLGRLSKLEILNLSSNDLY 194
           +N L                        SG+IPP +G+L  L  L LSSN L+
Sbjct: 175 NNNLTGVIPSSFGNLTNLTFLYLDGNKISGFIPPQIGKLKNLRFLYLSSNGLH 227

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359488981|ref|XP_002275364.2| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850-like [Vitis vinifera]

 Score =  102 bits (255), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 77/231 (33%), Positives = 110/231 (47%), Gaps = 60/231 (25%)

Query: 14  IIILINVGAISDTTIFAIASAAGLLSSPK--LLEREALLATGWWVNNWATGNYTSYHCKW 71
           +II   V  ++ T +  + S A  +SSP     E EAL +TGWW       N TS HC W
Sbjct: 5   VIISTAVVIVTSTMMMMLFSLAKAISSPSSSTDEAEALRSTGWW-------NSTSAHCHW 57

Query: 72  TGVSCNSAGSVIGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAA 131
            GV CN+AG V G++L  Y +    GEL + +FS FP+L    + S   L+GSIP +I  
Sbjct: 58  DGVYCNNAGRVTGIAL--YGSGKELGELSKLEFSSFPSLVELNL-SACGLNGSIPHQIGT 114

Query: 132 VSMLQTLELPSSSLTGIIPL------------------------EMGRLRNLVHLDL--- 164
           ++ L  L L  ++LTG IPL                        E+G+++NL+ LDL   
Sbjct: 115 LTQLTVLSLHDNNLTGEIPLSLANLTQLLYLTLCSNPLHGSIPPEIGKMKNLIFLDLGYS 174

Query: 165 ---------------------SDNYLSGYIPPTLGRLSKLEILNLSSNDLY 194
                                  N +SG+IPP +G++  L+ L LS N L+
Sbjct: 175 NLIGVIPSSFGNLTTLTTLYLDGNQISGFIPPQIGKMKNLKSLLLSYNGLH 225

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	194
TAIR|locus:2178968	218	AT5G21090 [Arabidopsis thalian	0.618	0.550	0.368	1.8e-16
TAIR|locus:2011339	1120	AT1G35710 [Arabidopsis thalian	0.886	0.153	0.358	1.8e-16
TAIR|locus:2182870	1192	EMS1 "EXCESS MICROSPOROCYTES1"	0.819	0.133	0.350	4.2e-16
TAIR|locus:2170668	604	AT5G62710 [Arabidopsis thalian	0.829	0.266	0.348	1.4e-15
TAIR|locus:2061466	634	AT2G23950 [Arabidopsis thalian	0.902	0.276	0.306	1.8e-14
TAIR|locus:2180587	811	RLP52 "receptor like protein 5	0.618	0.147	0.370	2e-14
TAIR|locus:2120362	1249	GSO1 "GASSHO1" [Arabidopsis th	0.670	0.104	0.370	2.9e-14
TAIR|locus:2005507	976	ER "ERECTA" [Arabidopsis thali	0.670	0.133	0.372	3.4e-14
TAIR|locus:2128414	638	AT4G23740 [Arabidopsis thalian	0.664	0.202	0.355	4.8e-14
TAIR|locus:2032553	996	HSL1 "HAESA-like 1" [Arabidops	0.793	0.154	0.319	5.7e-14

TAIR|locus:2178968 AT5G21090 [Arabidopsis thaliana (taxid:3702)]

 Score = 204 (76.9 bits), Expect = 1.8e-16, P = 1.8e-16
 Identities = 46/125 (36%), Positives = 77/125 (61%)

Query:    69 CKWTGVSCNSAGSVIGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSE 128
             C W  V+CN    V  V L    N N++G L   +     +L+  +++ N +  G+IPSE
Sbjct:    59 CTWFHVTCNQDNRVTRVDL---GNSNLSGHLAP-ELGKLEHLQYLELYKNNI-QGTIPSE 113

Query:   129 IAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLSDNYLSGYIPPTLGRLSKLEILNL 188
             +  +  L +L+L +++LTGI+P  +G+L++LV L L+DN L+G IP  L  +  L+++++
Sbjct:   114 LGNLKNLISLDLYNNNLTGIVPTSLGKLKSLVFLRLNDNRLTGPIPRALTAIPSLKVVDV 173

Query:   189 SSNDL 193
             SSNDL
Sbjct:   174 SSNDL 178

GO:0005886 "plasma membrane" evidence=ISM

GO:0007165 "signal transduction" evidence=IC

GO:0006096 "glycolysis" evidence=RCA

GO:0006833 "water transport" evidence=RCA

GO:0006972 "hyperosmotic response" evidence=RCA

GO:0007030 "Golgi organization" evidence=RCA

GO:0009266 "response to temperature stimulus" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0042744 "hydrogen peroxide catabolic process" evidence=RCA

GO:0046686 "response to cadmium ion" evidence=RCA

TAIR|locus:2011339 AT1G35710 [Arabidopsis thaliana (taxid:3702)]

 Score = 217 (81.4 bits), Expect = 1.8e-16, P = 1.8e-16
 Identities = 66/184 (35%), Positives = 92/184 (50%)

Query:    11 LVVIIILINVGAISDTTIFAIASAAGLLSSPKLLEREALLATGWWVNNWATGNYTSYHC- 69
             L+ I I+++    +  TI   A A  LL         + L++  WV++ A  N TS+ C 
Sbjct:    14 LLFISIILSCSISASATI---AEANALLKWKSTFTNSSKLSS--WVHD-ANTN-TSFSCT 66

Query:    70 KWTGVSCNSAGSVIGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEI 129
              W GVSCNS GS+  ++L    N  I G    F F    NL    +  N LLSG+IP + 
Sbjct:    67 SWYGVSCNSRGSIEELNLT---NTGIEGTFQDFPFISLSNLAYVDLSMN-LLSGTIPPQF 122

Query:   130 AAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLSDNYLSGYIPPTLGRLSKLEILNLS 189
               +S L   +L ++ LTG I   +G L+NL  L L  NYL+  IP  LG +  +  L LS
Sbjct:   123 GNLSKLIYFDLSTNHLTGEISPSLGNLKNLTVLYLHQNYLTSVIPSELGNMESMTDLALS 182

Query:   190 SNDL 193
              N L
Sbjct:   183 QNKL 186

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=ISS

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0000165 "MAPK cascade" evidence=RCA

GO:0009814 "defense response, incompatible interaction" evidence=RCA

TAIR|locus:2182870 EMS1 "EXCESS MICROSPOROCYTES1" [Arabidopsis thaliana (taxid:3702)]

 Score = 214 (80.4 bits), Expect = 4.2e-16, P = 4.2e-16
 Identities = 61/174 (35%), Positives = 98/174 (56%)

Query:    22 AISDTTIFAIAS-AAGLLSSPKLLEREALLATGWWVNNWATGNYTSYHCKWTGVSCNSAG 80
             + S + I  ++S    L+S  + LE  +LL++ W V++ A+      HC W GV+C   G
Sbjct:    14 SFSSSAIVDLSSETTSLISFKRSLENPSLLSS-WNVSSSAS------HCDWVGVTC-LLG 65

Query:    81 SVIGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLEL 140
              V  +SL    + ++ G++ + + S   NL+   +  N   SG IP EI  +  LQTL+L
Sbjct:    66 RVNSLSL---PSLSLRGQIPK-EISSLKNLRELCLAGNQF-SGKIPPEIWNLKHLQTLDL 120

Query:   141 PSSSLTGIIPLEMGRLRNLVHLDLSDNYLSGYIPPTLG-RLSKLEILNLSSNDL 193
               +SLTG++P  +  L  L++LDLSDN+ SG +PP+    L  L  L++S+N L
Sbjct:   121 SGNSLTGLLPRLLSELPQLLYLDLSDNHFSGSLPPSFFISLPALSSLDVSNNSL 174

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009556 "microsporogenesis" evidence=IMP

GO:0010234 "tapetal cell fate specification" evidence=IMP

GO:0016020 "membrane" evidence=IDA

GO:0019199 "transmembrane receptor protein kinase activity" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2170668 AT5G62710 [Arabidopsis thaliana (taxid:3702)]

 Score = 205 (77.2 bits), Expect = 1.4e-15, P = 1.4e-15
 Identities = 60/172 (34%), Positives = 88/172 (51%)

Query:    23 ISDTTIFAIASAAGLLSSPKLLE-REALLATGWWVNNWATGNYTSYHCKWTGVSCNSAGS 81
             IS  T+F   S A  L    LLE +     T   + NW   + +   C WTGVSCN    
Sbjct:    11 ISVATLFVSCSFALTLDGFALLELKSGFNDTRNSLENWKDSDESP--CSWTGVSCNPQDQ 68

Query:    82 -VIGVSLLWYENDNITG-ELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLE 139
              V+ ++L + +   I    +G+        L+   +H N L  G+IP+EI   + L+ + 
Sbjct:    69 RVVSINLPYMQLGGIISPSIGKLS-----RLQRLALHQNSL-HGNIPNEITNCTELRAMY 122

Query:   140 LPSSSLTGIIPLEMGRLRNLVHLDLSDNYLSGYIPPTLGRLSKLEILNLSSN 191
             L ++ L G IP ++G L  L  LDLS N L G IP ++ RL++L  LNLS+N
Sbjct:   123 LRANFLQGGIPPDLGNLTFLTILDLSSNTLKGAIPSSISRLTRLRSLNLSTN 174

GO:0004672 "protein kinase activity" evidence=IEA;ISS

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0009887 "organ morphogenesis" evidence=RCA

GO:0010051 "xylem and phloem pattern formation" evidence=RCA

GO:0048439 "flower morphogenesis" evidence=RCA

GO:0048519 "negative regulation of biological process" evidence=RCA

TAIR|locus:2061466 AT2G23950 [Arabidopsis thaliana (taxid:3702)]

 Score = 195 (73.7 bits), Expect = 1.8e-14, P = 1.8e-14
 Identities = 58/189 (30%), Positives = 96/189 (50%)

Query:    12 VVIIILINVGAISDTTIFAIASAAGLLSSPKLLEREALLATGWWVN-------NWATGNY 64
             +V++ LI +   S   +        L S P+  E EAL+     ++       NW    +
Sbjct:     1 MVVMKLITMKIFSVLLLLCFFVTCSLSSEPRNPEVEALINIKNELHDPHGVFKNW--DEF 58

Query:    65 TSYHCKWTGVSCNSAGSVIGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGS 124
             +   C WT +SC+S   VIG+      + +++G L         NL+   + +N + SG 
Sbjct:    59 SVDPCSWTMISCSSDNLVIGLGA---PSQSLSGTLSG-SIGNLTNLRQVSLQNNNI-SGK 113

Query:   125 IPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLSDNYLSGYIPPTLGRLSKLE 184
             IP EI ++  LQTL+L ++  +G IP  + +L NL +L L++N LSG  P +L ++  L 
Sbjct:   114 IPPEICSLPKLQTLDLSNNRFSGEIPGSVNQLSNLQYLRLNNNSLSGPFPASLSQIPHLS 173

Query:   185 ILNLSSNDL 193
              L+LS N+L
Sbjct:   174 FLDLSYNNL 182

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0010075 "regulation of meristem growth" evidence=RCA

TAIR|locus:2180587 RLP52 "receptor like protein 52" [Arabidopsis thaliana (taxid:3702)]

 Score = 196 (74.1 bits), Expect = 2.0e-14, P = 2.0e-14
 Identities = 47/127 (37%), Positives = 73/127 (57%)

Query:    63 NYTSYHCKWTGVSCNSAGSVIGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLS 122
             N TS  C W  ++C +AG+V  ++   ++N N TG +       FPNLKS  +  NY  +
Sbjct:    47 NDTSSPCNWPRITC-TAGNVTEIN---FQNQNFTGTVPT-TICNFPNLKSLNLSFNYF-A 100

Query:   123 GSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLR-NLVHLDLSDNYLSGYIPPTLGRLS 181
             G  P+ +   + LQ L+L  +   G +P ++ RL   L +LDL+ N  +G IP  +GR+S
Sbjct:   101 GEFPTVLYNCTKLQYLDLSQNLFNGSLPDDINRLAPKLKYLDLAANSFAGDIPKNIGRIS 160

Query:   182 KLEILNL 188
             KL++LNL
Sbjct:   161 KLKVLNL 167

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC;RCA

GO:0010200 "response to chitin" evidence=IEP

GO:0050832 "defense response to fungus" evidence=IMP

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2120362 GSO1 "GASSHO1" [Arabidopsis thaliana (taxid:3702)]

 Score = 197 (74.4 bits), Expect = 2.9e-14, P = 2.9e-14
 Identities = 50/135 (37%), Positives = 77/135 (57%)

Query:    56 VNNWATGNYTSYHCKWTGVSCNSAGSVIGVSLLWYENDNITGELGRFKFSCFPNLKSFKI 115
             +  W + N    +C WTGV+C++ G +  V  L      +TG +  + F  F NL    +
Sbjct:    47 LRQWNSDNIN--YCSWTGVTCDNTG-LFRVIALNLTGLGLTGSISPW-FGRFDNLIHLDL 102

Query:   116 HSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLSDNYLSGYIPP 175
              SN L+ G IP+ ++ ++ L++L L S+ LTG IP ++G L N+  L + DN L G IP 
Sbjct:   103 SSNNLV-GPIPTALSNLTSLESLFLFSNQLTGEIPSQLGSLVNIRSLRIGDNELVGDIPE 161

Query:   176 TLGRLSKLEILNLSS 190
             TLG L  L++L L+S
Sbjct:   162 TLGNLVNLQMLALAS 176

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0008544 "epidermis development" evidence=IGI

GO:0009790 "embryo development" evidence=IGI

TAIR|locus:2005507 ER "ERECTA" [Arabidopsis thaliana (taxid:3702)]

 Score = 195 (73.7 bits), Expect = 3.4e-14, P = 3.4e-14
 Identities = 51/137 (37%), Positives = 74/137 (54%)

Query:    58 NWATGNYTSYHCKWTGVSC-NSAGSVIGVSLLWYENDNITGELGRFKFSCFPNLKSFKIH 116
             +W T   + Y C W GVSC N   +V+ ++L    + N+ GE+         +L S  + 
Sbjct:    46 DWTTSPSSDY-CVWRGVSCENVTFNVVALNL---SDLNLDGEISP-AIGDLKSLLSIDLR 100

Query:   117 SNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLSDNYLSGYIPPT 176
              N L SG IP EI   S LQ L+L  + L+G IP  + +L+ L  L L +N L G IP T
Sbjct:   101 GNRL-SGQIPDEIGDCSSLQNLDLSFNELSGDIPFSISKLKQLEQLILKNNQLIGPIPST 159

Query:   177 LGRLSKLEILNLSSNDL 193
             L ++  L+IL+L+ N L
Sbjct:   160 LSQIPNLKILDLAQNKL 176

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005576 "extracellular region" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0048281 "inflorescence morphogenesis" evidence=IMP

GO:0009944 "polarity specification of adaxial/abaxial axis" evidence=IMP

GO:0042742 "defense response to bacterium" evidence=IMP

GO:0005739 "mitochondrion" evidence=IDA

GO:0050832 "defense response to fungus" evidence=IMP

GO:0010103 "stomatal complex morphogenesis" evidence=RCA;IMP

GO:0001558 "regulation of cell growth" evidence=IGI;IMP

GO:0009965 "leaf morphogenesis" evidence=RCA;IMP

GO:0010148 "transpiration" evidence=IMP

GO:0030155 "regulation of cell adhesion" evidence=IMP

GO:0051302 "regulation of cell division" evidence=IGI;IMP

GO:0009664 "plant-type cell wall organization" evidence=IMP

GO:0008356 "asymmetric cell division" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

GO:0031540 "regulation of anthocyanin biosynthetic process" evidence=RCA

GO:0019199 "transmembrane receptor protein kinase activity" evidence=ISS

GO:2000027 "regulation of organ morphogenesis" evidence=IMP

TAIR|locus:2128414 AT4G23740 [Arabidopsis thaliana (taxid:3702)]

 Score = 191 (72.3 bits), Expect = 4.8e-14, P = 4.8e-14
 Identities = 49/138 (35%), Positives = 75/138 (54%)

Query:    58 NWATGNYTSYHCK-WTGVSCNSAGS-VIGVSLLWYENDNITGELGRFKFSCFPNLKSFKI 115
             NW   N TS  C  WTGV+CN  GS +I V L       + G++     S    L+   +
Sbjct:    47 NW---NETSQVCNIWTGVTCNQDGSRIIAVRL---PGVGLNGQIPPNTISRLSALRVLSL 100

Query:   116 HSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLSDNYLSGYIPP 175
              SN L+SG  P +   +  L  L L  ++L+G +PL+    +NL  ++LS+N  +G IP 
Sbjct:   101 RSN-LISGEFPKDFVELKDLAFLYLQDNNLSGPLPLDFSVWKNLTSVNLSNNGFNGTIPS 159

Query:   176 TLGRLSKLEILNLSSNDL 193
             +L RL +++ LNL++N L
Sbjct:   160 SLSRLKRIQSLNLANNTL 177

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=ISS

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0010075 "regulation of meristem growth" evidence=RCA

TAIR|locus:2032553 HSL1 "HAESA-like 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 193 (73.0 bits), Expect = 5.7e-14, P = 5.7e-14
 Identities = 53/166 (31%), Positives = 87/166 (52%)

Query:    27 TIFAIASAAGLLSSPKLLEREALLATGWWVNNWATGNYTSYHCKWTGVSCNSAGSVIGVS 86
             T+F++     +L   KL    +L     ++++W + + +   C+W+GVSC  AG    V+
Sbjct:    12 TVFSLNQDGFILQQVKL----SLDDPDSYLSSWNSNDASP--CRWSGVSC--AGDFSSVT 63

Query:    87 LLWYENDNITGELGRFKFSC-FPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSL 145
              +   + N+ G        C   NL    +++N + S ++P  IAA   LQTL+L  + L
Sbjct:    64 SVDLSSANLAGPFP--SVICRLSNLAHLSLYNNSINS-TLPLNIAACKSLQTLDLSQNLL 120

Query:   146 TGIIPLEMGRLRNLVHLDLSDNYLSGYIPPTLGRLSKLEILNLSSN 191
             TG +P  +  +  LVHLDL+ N  SG IP + G+   LE+L+L  N
Sbjct:   121 TGELPQTLADIPTLVHLDLTGNNFSGDIPASFGKFENLEVLSLVYN 166

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0000271 "polysaccharide biosynthetic process" evidence=RCA

GO:0007020 "microtubule nucleation" evidence=RCA

GO:0007389 "pattern specification process" evidence=RCA

GO:0008361 "regulation of cell size" evidence=RCA

GO:0009664 "plant-type cell wall organization" evidence=RCA

GO:0009825 "multidimensional cell growth" evidence=RCA

GO:0009832 "plant-type cell wall biogenesis" evidence=RCA

GO:0009926 "auxin polar transport" evidence=RCA

GO:0009932 "cell tip growth" evidence=RCA

GO:0010015 "root morphogenesis" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

GO:0010817 "regulation of hormone levels" evidence=RCA

GO:0040007 "growth" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048653 "anther development" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pg.C_LG_II000069 hypothetical protein (847 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	194
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-18
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-13
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	5e-13
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-12
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	9e-12
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-11
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-11
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	5e-11
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	7e-11
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-09
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-09
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	5e-08
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-07
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-07
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-07
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	2e-05
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-05
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	6e-05
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	0.001

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 81.8 bits (202), Expect = 3e-18
 Identities = 49/162 (30%), Positives = 82/162 (50%), Gaps = 31/162 (19%)

Query: 55  WVNNWATGNYTSYHCKWTGVSCNSAGSVIGVSLLWYENDNITGELGRFKFSCFPNLKSFK 114
           +++NW   N ++  C W G++CN++  V+ + L      NI+G++    F   P +++  
Sbjct: 47  YLSNW---NSSADVCLWQGITCNNSSRVVSIDL---SGKNISGKISSAIFR-LPYIQTIN 99

Query: 115 IHSNYLLSGSIPSEI-----------------------AAVSMLQTLELPSSSLTGIIPL 151
           + +N L SG IP +I                        ++  L+TL+L ++ L+G IP 
Sbjct: 100 LSNNQL-SGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPN 158

Query: 152 EMGRLRNLVHLDLSDNYLSGYIPPTLGRLSKLEILNLSSNDL 193
           ++G   +L  LDL  N L G IP +L  L+ LE L L+SN L
Sbjct: 159 DIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQL 200

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 67.9 bits (166), Expect = 1e-13
 Identities = 33/76 (43%), Positives = 49/76 (64%)

Query: 118 NYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLSDNYLSGYIPPTL 177
           N  L G IP++I+ +  LQ++ L  +S+ G IP  +G + +L  LDLS N  +G IP +L
Sbjct: 427 NQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESL 486

Query: 178 GRLSKLEILNLSSNDL 193
           G+L+ L ILNL+ N L
Sbjct: 487 GQLTSLRILNLNGNSL 502

Length = 623

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 66.4 bits (162), Expect = 5e-13
 Identities = 34/73 (46%), Positives = 46/73 (63%)

Query: 121 LSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLSDNYLSGYIPPTLGRL 180
           L+G IPS +  +  LQ L L  + L+G IP  +  L+ L+ LDLSDN LSG IP  + +L
Sbjct: 248 LTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQL 307

Query: 181 SKLEILNLSSNDL 193
             LEIL+L SN+ 
Sbjct: 308 QNLEILHLFSNNF 320

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 65.6 bits (160), Expect = 1e-12
 Identities = 43/136 (31%), Positives = 71/136 (52%), Gaps = 8/136 (5%)

Query: 64  YTSYHCKWTGVSCN------SAGSVIGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHS 117
            TS   ++  +S N        GS+  +  L   N+ ++GE+       F +LK   +  
Sbjct: 115 TTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPN-DIGSFSSLKVLDLGG 173

Query: 118 NYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLSDNYLSGYIPPTL 177
           N L+ G IP+ +  ++ L+ L L S+ L G IP E+G++++L  + L  N LSG IP  +
Sbjct: 174 NVLV-GKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEI 232

Query: 178 GRLSKLEILNLSSNDL 193
           G L+ L  L+L  N+L
Sbjct: 233 GGLTSLNHLDLVYNNL 248

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 62.6 bits (152), Expect = 9e-12
 Identities = 35/84 (41%), Positives = 50/84 (59%), Gaps = 1/84 (1%)

Query: 110 LKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLSDNYL 169
           L+   + SN L+ G IP E+  +  L+ + L  ++L+G IP E+G L +L HLDL  N L
Sbjct: 190 LEFLTLASNQLV-GQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNL 248

Query: 170 SGYIPPTLGRLSKLEILNLSSNDL 193
           +G IP +LG L  L+ L L  N L
Sbjct: 249 TGPIPSSLGNLKNLQYLFLYQNKL 272

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 62.2 bits (151), Expect = 2e-11
 Identities = 35/92 (38%), Positives = 48/92 (52%), Gaps = 1/92 (1%)

Query: 103 KFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHL 162
           K      L   K+  N  LSG IP E+++   L +L+L  + L+G IP     +  L  L
Sbjct: 494 KLGSLSELMQLKLSEN-KLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQL 552

Query: 163 DLSDNYLSGYIPPTLGRLSKLEILNLSSNDLY 194
           DLS N LSG IP  LG +  L  +N+S N L+
Sbjct: 553 DLSQNQLSGEIPKNLGNVESLVQVNISHNHLH 584

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 61.4 bits (149), Expect = 3e-11
 Identities = 44/99 (44%), Positives = 58/99 (58%), Gaps = 6/99 (6%)

Query: 95  ITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMG 154
           I  ELG+ K     +LK   +  N L SG IP EI  ++ L  L+L  ++LTG IP  +G
Sbjct: 204 IPRELGQMK-----SLKWIYLGYNNL-SGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLG 257

Query: 155 RLRNLVHLDLSDNYLSGYIPPTLGRLSKLEILNLSSNDL 193
            L+NL +L L  N LSG IPP++  L KL  L+LS N L
Sbjct: 258 NLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSL 296

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 60.6 bits (147), Expect = 5e-11
 Identities = 32/85 (37%), Positives = 49/85 (57%), Gaps = 1/85 (1%)

Query: 109 NLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLSDNY 168
            L++  +  N   SG++P ++ ++S L  L+L  + L+G IP E+   + LV LDLS N 
Sbjct: 476 RLENLDLSRN-QFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQ 534

Query: 169 LSGYIPPTLGRLSKLEILNLSSNDL 193
           LSG IP +   +  L  L+LS N L
Sbjct: 535 LSGQIPASFSEMPVLSQLDLSQNQL 559

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 59.8 bits (145), Expect = 7e-11
 Identities = 37/125 (29%), Positives = 63/125 (50%), Gaps = 7/125 (5%)

Query: 71  WTGVSC---NSAGSVIGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPS 127
           W+G  C   ++ G    +  L  +N  + G +     S   +L+S  +  N +  G+IP 
Sbjct: 404 WSGADCQFDSTKGKWF-IDGLGLDNQGLRGFIPN-DISKLRHLQSINLSGNSI-RGNIPP 460

Query: 128 EIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLSDNYLSGYIPPTLG-RLSKLEIL 186
            + +++ L+ L+L  +S  G IP  +G+L +L  L+L+ N LSG +P  LG RL      
Sbjct: 461 SLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASF 520

Query: 187 NLSSN 191
           N + N
Sbjct: 521 NFTDN 525

Length = 623

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 55.2 bits (133), Expect = 3e-09
 Identities = 34/85 (40%), Positives = 46/85 (54%), Gaps = 1/85 (1%)

Query: 109 NLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLSDNY 168
           NL+   + SN   +G IP  + ++  LQ L+L S+  +G IP  +G+  NL  LDLS N 
Sbjct: 309 NLEILHLFSNNF-TGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNN 367

Query: 169 LSGYIPPTLGRLSKLEILNLSSNDL 193
           L+G IP  L     L  L L SN L
Sbjct: 368 LTGEIPEGLCSSGNLFKLILFSNSL 392

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 55.2 bits (133), Expect = 3e-09
 Identities = 39/107 (36%), Positives = 57/107 (53%), Gaps = 3/107 (2%)

Query: 87  LLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLT 146
           L  Y+N  ++G +    FS    L S  +  N L SG IP  +  +  L+ L L S++ T
Sbjct: 265 LFLYQN-KLSGPIPPSIFS-LQKLISLDLSDNSL-SGEIPELVIQLQNLEILHLFSNNFT 321

Query: 147 GIIPLEMGRLRNLVHLDLSDNYLSGYIPPTLGRLSKLEILNLSSNDL 193
           G IP+ +  L  L  L L  N  SG IP  LG+ + L +L+LS+N+L
Sbjct: 322 GKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNL 368

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 51.7 bits (124), Expect = 5e-08
 Identities = 24/56 (42%), Positives = 37/56 (66%)

Query: 138 LELPSSSLTGIIPLEMGRLRNLVHLDLSDNYLSGYIPPTLGRLSKLEILNLSSNDL 193
           L L +  L G IP ++ +LR+L  ++LS N + G IPP+LG ++ LE+L+LS N  
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSF 478

Length = 623

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 50.6 bits (121), Expect = 1e-07
 Identities = 36/103 (34%), Positives = 53/103 (51%), Gaps = 3/103 (2%)

Query: 91  ENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIP 150
           ++++ +GEL   +F+  P +    I +N L  G I S    +  LQ L L  +   G +P
Sbjct: 412 QDNSFSGELPS-EFTKLPLVYFLDISNNNL-QGRINSRKWDMPSLQMLSLARNKFFGGLP 469

Query: 151 LEMGRLRNLVHLDLSDNYLSGYIPPTLGRLSKLEILNLSSNDL 193
            +    + L +LDLS N  SG +P  LG LS+L  L LS N L
Sbjct: 470 -DSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKL 511

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 50.2 bits (120), Expect = 2e-07
 Identities = 33/101 (32%), Positives = 49/101 (48%), Gaps = 2/101 (1%)

Query: 93  DNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLE 152
           +N TG++     +  P L+  ++ SN   SG IP  +   + L  L+L +++LTG IP  
Sbjct: 318 NNFTGKIPV-ALTSLPRLQVLQLWSNKF-SGEIPKNLGKHNNLTVLDLSTNNLTGEIPEG 375

Query: 153 MGRLRNLVHLDLSDNYLSGYIPPTLGRLSKLEILNLSSNDL 193
           +    NL  L L  N L G IP +LG    L  + L  N  
Sbjct: 376 LCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSF 416

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 49.5 bits (118), Expect = 3e-07
 Identities = 32/109 (29%), Positives = 57/109 (52%), Gaps = 2/109 (1%)

Query: 68  HCKWTGVSCNSAGSVIGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPS 127
             +++G      GS+  +  L    + ++GE+     SC   L S  +  N L SG IP+
Sbjct: 484 RNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSC-KKLVSLDLSHNQL-SGQIPA 541

Query: 128 EIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLSDNYLSGYIPPT 176
             + + +L  L+L  + L+G IP  +G + +LV +++S N+L G +P T
Sbjct: 542 SFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPST 590

Length = 968

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 40.2 bits (95), Expect = 2e-05
 Identities = 23/59 (38%), Positives = 31/59 (52%)

Query: 135 LQTLELPSSSLTGIIPLEMGRLRNLVHLDLSDNYLSGYIPPTLGRLSKLEILNLSSNDL 193
           L++L+L ++ LT I       L NL  LDLS N L+   P     L  L  L+LS N+L
Sbjct: 2   LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 42.9 bits (101), Expect = 4e-05
 Identities = 23/74 (31%), Positives = 39/74 (52%)

Query: 121 LSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLSDNYLSGYIPPTLGRL 180
           L G IP  + A   L+ + L  +S +G +P E  +L  +  LD+S+N L G I      +
Sbjct: 392 LEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDM 451

Query: 181 SKLEILNLSSNDLY 194
             L++L+L+ N  +
Sbjct: 452 PSLQMLSLARNKFF 465

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 42.5 bits (100), Expect = 6e-05
 Identities = 27/73 (36%), Positives = 41/73 (56%)

Query: 121 LSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLSDNYLSGYIPPTLGRL 180
           L+G IP  + +   L  L L S+SL G IP  +G  R+L  + L DN  SG +P    +L
Sbjct: 368 LTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKL 427

Query: 181 SKLEILNLSSNDL 193
             +  L++S+N+L
Sbjct: 428 PLVYFLDISNNNL 440

Length = 968

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 38.8 bits (90), Expect = 0.001
 Identities = 31/86 (36%), Positives = 49/86 (56%), Gaps = 4/86 (4%)

Query: 108 PNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLSDN 167
            NLK   +  N + S  +PS +  +  L+ L+L  + L+  +P  +  L NL +LDLS N
Sbjct: 140 SNLKELDLSDNKIES--LPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGN 196

Query: 168 YLSGYIPPTLGRLSKLEILNLSSNDL 193
            +S  +PP +  LS LE L+LS+N +
Sbjct: 197 KISD-LPPEIELLSALEELDLSNNSI 221

Length = 394

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	194
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.86
PLN03150	623	hypothetical protein; Provisional	99.78
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.56
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.37
PLN03150	623	hypothetical protein; Provisional	99.33
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.25
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.15
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.15
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.15
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	99.13
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.08
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	99.02
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.01
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.0
KOG4237	498	consensus Extracellular matrix protein slit, conta	98.99
KOG0472	565	consensus Leucine-rich repeat protein [Function un	98.97
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	98.91
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.87
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	98.8
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	98.75
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.74
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	98.72
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.7
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.68
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.67
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.63
KOG4237	498	consensus Extracellular matrix protein slit, conta	98.61
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.6
PLN03210	1153	Resistant to P. syringae 6; Provisional	98.58
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	98.56
PLN03210	1153	Resistant to P. syringae 6; Provisional	98.52
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.43
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.42
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.42
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	98.42
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.39
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.35
PF08263	43	LRRNT_2: Leucine rich repeat N-terminal domain; In	98.35
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.26
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.15
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.99
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	97.99
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.98
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.97
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	97.96
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	97.86
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.78
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	97.57
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	97.5
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.45
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.05
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.92
KOG0473	326	consensus Leucine-rich repeat protein [Function un	96.89
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.75
PRK15386	426	type III secretion protein GogB; Provisional	96.74
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.64
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	96.59
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.47
KOG2982	418	consensus Uncharacterized conserved protein [Funct	96.37
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	96.21
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	96.09
KOG2982	418	consensus Uncharacterized conserved protein [Funct	95.82
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	95.24
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	95.14
KOG2123	388	consensus Uncharacterized conserved protein [Funct	95.11
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	94.94
PRK15386	426	type III secretion protein GogB; Provisional	94.88
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	94.61
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	93.95
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	93.44
KOG0473	326	consensus Leucine-rich repeat protein [Function un	93.43
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	93.04
smart00370	26	LRR Leucine-rich repeats, outliers.	93.04
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	90.43
smart00365	26	LRR_SD22 Leucine-rich repeat, SDS22-like subfamily	88.89
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	87.95
smart00364	26	LRR_BAC Leucine-rich repeats, bacterial type.	85.46
smart00368	28	LRR_RI Leucine rich repeat, ribonuclease inhibitor	84.66

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.86  E-value=3.7e-21  Score=174.70  Aligned_cols=151  Identities=30%  Similarity=0.544  Sum_probs=87.2

Q ss_pred             CCCchhHHHHHHHhhcCCCCCCCCCCCCCCCCCcccccceeCCCCCeeeee---------------------eeeccCCc
Q 046655           36 GLLSSPKLLEREALLATGWWVNNWATGNYTSYHCKWTGVSCNSAGSVIGVS---------------------LLWYENDN   94 (194)
Q Consensus        36 ~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~~~c~~~gv~c~~~~~~~~l~---------------------~l~l~~n~   94 (194)
                      +.|..+|+.||+.+.++...+.+|   ....++|.|.||.|+..++++.|.                     .+++++|+
T Consensus        28 ~~~~~~l~~~~~~~~~~~~~~~~w---~~~~~~c~w~gv~c~~~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~  104 (968)
T PLN00113         28 AEELELLLSFKSSINDPLKYLSNW---NSSADVCLWQGITCNNSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQ  104 (968)
T ss_pred             HHHHHHHHHHHHhCCCCcccCCCC---CCCCCCCcCcceecCCCCcEEEEEecCCCccccCChHHhCCCCCCEEECCCCc
Confidence            357889999999997665567899   456789999999998655554443                     35566666


Q ss_pred             cccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchhhccCcccceeecccCccCCCCc
Q 046655           95 ITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLSDNYLSGYIP  174 (194)
Q Consensus        95 l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~g~~p  174 (194)
                      +.|.+|...+..+++|++|++++| .+++.+|.  +.+++|++|++++|.+.+.+|..++.+++|++|++++|.+.+.+|
T Consensus       105 ~~~~ip~~~~~~l~~L~~L~Ls~n-~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p  181 (968)
T PLN00113        105 LSGPIPDDIFTTSSSLRYLNLSNN-NFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIP  181 (968)
T ss_pred             cCCcCChHHhccCCCCCEEECcCC-ccccccCc--cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCC
Confidence            666666322334555555555555 44433332  223444444444444444444445555555555555555554555


Q ss_pred             cccCCCCCCCeEeccCCc
Q 046655          175 PTLGRLSKLEILNLSSND  192 (194)
Q Consensus       175 ~~~~~l~~L~~L~ls~N~  192 (194)
                      ..++++++|++|++++|.
T Consensus       182 ~~~~~l~~L~~L~L~~n~  199 (968)
T PLN00113        182 NSLTNLTSLEFLTLASNQ  199 (968)
T ss_pred             hhhhhCcCCCeeeccCCC
Confidence            555555555555555444

>PLN03150 hypothetical protein; Provisional

Probab=99.78  E-value=1.2e-18  Score=151.30  Aligned_cols=151  Identities=25%  Similarity=0.399  Sum_probs=127.1

Q ss_pred             ccCCCCchhHHHHHHHhhcCCCCCCCCCCCCCCCCCc-----ccccceeCCCC--CeeeeeeeeccCCccccccCccccC
Q 046655           33 SAAGLLSSPKLLEREALLATGWWVNNWATGNYTSYHC-----KWTGVSCNSAG--SVIGVSLLWYENDNITGELGRFKFS  105 (194)
Q Consensus        33 ~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~~~c-----~~~gv~c~~~~--~~~~l~~l~l~~n~l~~~lp~~~~~  105 (194)
                      .+...|..+|..+|..+..+.  ..+|.     .++|     .|.||.|....  ....+..++|++|.+.|.+| ..+.
T Consensus       368 ~t~~~~~~aL~~~k~~~~~~~--~~~W~-----g~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~g~ip-~~i~  439 (623)
T PLN03150        368 KTLLEEVSALQTLKSSLGLPL--RFGWN-----GDPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLRGFIP-NDIS  439 (623)
T ss_pred             ccCchHHHHHHHHHHhcCCcc--cCCCC-----CCCCCCcccccccceeeccCCCCceEEEEEECCCCCccccCC-HHHh
Confidence            345567888999999885443  24792     3455     79999996322  22346678899999999999 7899


Q ss_pred             CCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchhhccCcccceeecccCccCCCCccccCCC-CCCC
Q 046655          106 CFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLSDNYLSGYIPPTLGRL-SKLE  184 (194)
Q Consensus       106 ~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l-~~L~  184 (194)
                      .+++|+.|++++| .+.|.+|..++.+++|+.|+|++|+++|.+|+.++.+++|+.|++++|+++|.+|..++.. .++.
T Consensus       440 ~L~~L~~L~Ls~N-~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~  518 (623)
T PLN03150        440 KLRHLQSINLSGN-SIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRA  518 (623)
T ss_pred             CCCCCCEEECCCC-cccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCc
Confidence            9999999999999 9999999999999999999999999999999999999999999999999999999988763 4677


Q ss_pred             eEeccCCc
Q 046655          185 ILNLSSND  192 (194)
Q Consensus       185 ~L~ls~N~  192 (194)
                      .+++.+|.
T Consensus       519 ~l~~~~N~  526 (623)
T PLN03150        519 SFNFTDNA  526 (623)
T ss_pred             eEEecCCc
Confidence            88888875

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.56  E-value=4.5e-15  Score=135.12  Aligned_cols=110  Identities=34%  Similarity=0.549  Sum_probs=53.5

Q ss_pred             CeeeeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchhhccCcccc
Q 046655           81 SVIGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLV  160 (194)
Q Consensus        81 ~~~~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~  160 (194)
                      .+..|+.+++++|.+.+.+| ..+..+++|++|++++| .+.+.+|..+.++++|++|++++|.+.+.+|..++.+++|+
T Consensus       138 ~l~~L~~L~Ls~n~~~~~~p-~~~~~l~~L~~L~L~~n-~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~  215 (968)
T PLN00113        138 SIPNLETLDLSNNMLSGEIP-NDIGSFSSLKVLDLGGN-VLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLK  215 (968)
T ss_pred             ccCCCCEEECcCCcccccCC-hHHhcCCCCCEEECccC-cccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCcc
Confidence            34444455555555554444 34445555555555555 44444444444555555555555554444444444444444


Q ss_pred             eeecccCccCCCCccccCCCCCCCeEeccCCc
Q 046655          161 HLDLSDNYLSGYIPPTLGRLSKLEILNLSSND  192 (194)
Q Consensus       161 ~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~  192 (194)
                      .|++++|++++.+|..++++++|++|++++|.
T Consensus       216 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~  247 (968)
T PLN00113        216 WIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNN  247 (968)
T ss_pred             EEECcCCccCCcCChhHhcCCCCCEEECcCce
Confidence            44444444444444444444444444444443

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.37  E-value=4.5e-14  Score=102.09  Aligned_cols=110  Identities=29%  Similarity=0.492  Sum_probs=94.3

Q ss_pred             CCCeeeeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCccc-ccCchhhccCc
Q 046655           79 AGSVIGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLT-GIIPLEMGRLR  157 (194)
Q Consensus        79 ~~~~~~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~-~~~p~~~~~l~  157 (194)
                      ...+.+++.+++.+|++. ++| ..++.++.|+.|+++.| .+. ..|..|+.++.|+.|||.+|++. ..+|..|..+.
T Consensus        52 ia~l~nlevln~~nnqie-~lp-~~issl~klr~lnvgmn-rl~-~lprgfgs~p~levldltynnl~e~~lpgnff~m~  127 (264)
T KOG0617|consen   52 IAELKNLEVLNLSNNQIE-ELP-TSISSLPKLRILNVGMN-RLN-ILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMT  127 (264)
T ss_pred             HHHhhhhhhhhcccchhh-hcC-hhhhhchhhhheecchh-hhh-cCccccCCCchhhhhhccccccccccCCcchhHHH
Confidence            456778888999999999 999 78999999999999999 776 68999999999999999999885 35788888888


Q ss_pred             ccceeecccCccCCCCccccCCCCCCCeEeccCCcC
Q 046655          158 NLVHLDLSDNYLSGYIPPTLGRLSKLEILNLSSNDL  193 (194)
Q Consensus       158 ~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l  193 (194)
                      .|+.|.++.|.|. .+|..++++++|+.|.+..|.+
T Consensus       128 tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndl  162 (264)
T KOG0617|consen  128 TLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDL  162 (264)
T ss_pred             HHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCch
Confidence            8888888888888 7888888888888888888754

>PLN03150 hypothetical protein; Provisional

Probab=99.33  E-value=2.3e-12  Score=112.34  Aligned_cols=85  Identities=38%  Similarity=0.620  Sum_probs=81.5

Q ss_pred             CccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchhhccCcccceeecccCccCCCCccccCCCCCCCeEec
Q 046655          109 NLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLSDNYLSGYIPPTLGRLSKLEILNL  188 (194)
Q Consensus       109 ~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~l  188 (194)
                      .++.|+|++| .+.|.+|..+..+++|+.|+|++|.+.|.+|..++.+++|+.|+|++|+++|.+|+.++++++|++|++
T Consensus       419 ~v~~L~L~~n-~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~L  497 (623)
T PLN03150        419 FIDGLGLDNQ-GLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNL  497 (623)
T ss_pred             EEEEEECCCC-CccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEEC
Confidence            4788999999 999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCcCC
Q 046655          189 SSNDLY  194 (194)
Q Consensus       189 s~N~ls  194 (194)
                      ++|+++
T Consensus       498 s~N~l~  503 (623)
T PLN03150        498 NGNSLS  503 (623)
T ss_pred             cCCccc
Confidence            999874

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.25  E-value=1.5e-13  Score=99.45  Aligned_cols=105  Identities=24%  Similarity=0.411  Sum_probs=92.8

Q ss_pred             eeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchhhccCcccceee
Q 046655           84 GVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLD  163 (194)
Q Consensus        84 ~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~  163 (194)
                      .+..+-+++|.++ .+| +.+..+.+|+.|++.+| .++ .+|..++.++.|+.|+++.|++. .+|..|+.++.|+.||
T Consensus        34 ~ITrLtLSHNKl~-~vp-pnia~l~nlevln~~nn-qie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levld  108 (264)
T KOG0617|consen   34 NITRLTLSHNKLT-VVP-PNIAELKNLEVLNLSNN-QIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLD  108 (264)
T ss_pred             hhhhhhcccCcee-ecC-CcHHHhhhhhhhhcccc-hhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhh
Confidence            3444667999999 888 78999999999999999 777 58999999999999999999998 8899999999999999


Q ss_pred             cccCccC-CCCccccCCCCCCCeEeccCCcC
Q 046655          164 LSDNYLS-GYIPPTLGRLSKLEILNLSSNDL  193 (194)
Q Consensus       164 L~~N~l~-g~~p~~~~~l~~L~~L~ls~N~l  193 (194)
                      +..|++. ..+|..|..+..|+.|++++|.|
T Consensus       109 ltynnl~e~~lpgnff~m~tlralyl~dndf  139 (264)
T KOG0617|consen  109 LTYNNLNENSLPGNFFYMTTLRALYLGDNDF  139 (264)
T ss_pred             ccccccccccCCcchhHHHHHHHHHhcCCCc
Confidence            9999887 47898899999999999999976

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.15  E-value=7.9e-12  Score=100.85  Aligned_cols=102  Identities=32%  Similarity=0.536  Sum_probs=75.5

Q ss_pred             eeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCccc---------------------
Q 046655           88 LWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLT---------------------  146 (194)
Q Consensus        88 l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~---------------------  146 (194)
                      +.++.|.+. .+| ..+..++.|..|++++| .+. .+|.+++.+..||.|+++.|+|.                     
T Consensus       417 l~lsnn~is-fv~-~~l~~l~kLt~L~L~NN-~Ln-~LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nq  492 (565)
T KOG0472|consen  417 LVLSNNKIS-FVP-LELSQLQKLTFLDLSNN-LLN-DLPEEMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQ  492 (565)
T ss_pred             HHhhcCccc-cch-HHHHhhhcceeeecccc-hhh-hcchhhhhhhhhheecccccccccchHHHhhHHHHHHHHhcccc
Confidence            334444444 666 56666777777777776 444 56777777766777777776664                     


Q ss_pred             --ccCchhhccCcccceeecccCccCCCCccccCCCCCCCeEeccCCcCC
Q 046655          147 --GIIPLEMGRLRNLVHLDLSDNYLSGYIPPTLGRLSKLEILNLSSNDLY  194 (194)
Q Consensus       147 --~~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~ls  194 (194)
                        ...|+.+.++.+|..||+.+|.+. .+|+.++++++|++|++.+|+|.
T Consensus       493 i~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  493 IGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             ccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence              223344788999999999999999 89999999999999999999984

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.15  E-value=3.5e-12  Score=107.03  Aligned_cols=88  Identities=27%  Similarity=0.319  Sum_probs=36.0

Q ss_pred             cCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchhhccCcccceeecccCccCCCCccc---cCCC
Q 046655          104 FSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLSDNYLSGYIPPT---LGRL  180 (194)
Q Consensus       104 ~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~g~~p~~---~~~l  180 (194)
                      +...+.|++|+|++| .++...+..|..+..|+.|+|++|++...--..|.++++|+.|||++|.+++.+.+.   |..+
T Consensus       313 WsftqkL~~LdLs~N-~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl  391 (873)
T KOG4194|consen  313 WSFTQKLKELDLSSN-RITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGL  391 (873)
T ss_pred             hhhcccceeEecccc-ccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccc
Confidence            333334444444444 333333333333444444444444443222223444444444444444444333221   3344


Q ss_pred             CCCCeEeccCCc
Q 046655          181 SKLEILNLSSND  192 (194)
Q Consensus       181 ~~L~~L~ls~N~  192 (194)
                      ++|+.|++.+|+
T Consensus       392 ~~LrkL~l~gNq  403 (873)
T KOG4194|consen  392 PSLRKLRLTGNQ  403 (873)
T ss_pred             hhhhheeecCce
Confidence            455555555544

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.15  E-value=4.7e-11  Score=87.84  Aligned_cols=105  Identities=23%  Similarity=0.393  Sum_probs=38.4

Q ss_pred             eeeeeeeeccCCccccccCccccC-CCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchhh-ccCccc
Q 046655           82 VIGVSLLWYENDNITGELGRFKFS-CFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEM-GRLRNL  159 (194)
Q Consensus        82 ~~~l~~l~l~~n~l~~~lp~~~~~-~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~-~~l~~L  159 (194)
                      ..+++.|+|+||+|+ .+.  .++ .+.+|+.|++++| .++. ++ .+..++.|++|++++|+++ .+.+.+ ..+++|
T Consensus        18 ~~~~~~L~L~~n~I~-~Ie--~L~~~l~~L~~L~Ls~N-~I~~-l~-~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L   90 (175)
T PF14580_consen   18 PVKLRELNLRGNQIS-TIE--NLGATLDKLEVLDLSNN-QITK-LE-GLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNL   90 (175)
T ss_dssp             ---------------------S--TT-TT--EEE-TTS---S---T-T----TT--EEE--SS----S-CHHHHHH-TT-
T ss_pred             ccccccccccccccc-ccc--chhhhhcCCCEEECCCC-CCcc-cc-CccChhhhhhcccCCCCCC-ccccchHHhCCcC
Confidence            345566888888888 665  344 5778899999999 7773 43 5778888999999999998 454444 467889


Q ss_pred             ceeecccCccCCCCc--cccCCCCCCCeEeccCCcCC
Q 046655          160 VHLDLSDNYLSGYIP--PTLGRLSKLEILNLSSNDLY  194 (194)
Q Consensus       160 ~~L~L~~N~l~g~~p--~~~~~l~~L~~L~ls~N~ls  194 (194)
                      +.|++++|++.. +-  ..+..+++|++|++.+|+++
T Consensus        91 ~~L~L~~N~I~~-l~~l~~L~~l~~L~~L~L~~NPv~  126 (175)
T PF14580_consen   91 QELYLSNNKISD-LNELEPLSSLPKLRVLSLEGNPVC  126 (175)
T ss_dssp             -EEE-TTS---S-CCCCGGGGG-TT--EEE-TT-GGG
T ss_pred             CEEECcCCcCCC-hHHhHHHHcCCCcceeeccCCccc
Confidence            999999998873 22  34667888999999988763

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=99.13  E-value=3.8e-11  Score=73.17  Aligned_cols=61  Identities=39%  Similarity=0.573  Sum_probs=42.8

Q ss_pred             CCCCEeecCCCcccccCchhhccCcccceeecccCccCCCCccccCCCCCCCeEeccCCcC
Q 046655          133 SMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLSDNYLSGYIPPTLGRLSKLEILNLSSNDL  193 (194)
Q Consensus       133 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l  193 (194)
                      ++|++|++++|+++...+..|.++++|++|++++|+++...|..|.++++|++|++++|+|
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            3567777777777744445677777777777777777755555677777777777777764

...

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.08  E-value=1.6e-11  Score=103.17  Aligned_cols=104  Identities=22%  Similarity=0.239  Sum_probs=57.3

Q ss_pred             eeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchhhccCcccceeecccC
Q 046655           88 LWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLSDN  167 (194)
Q Consensus        88 l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N  167 (194)
                      ++|+.|++. .+.++.+.+++.|+.|++++| .+...-++.|...+.|++|+|++|++....++.|..+..|+.|+|++|
T Consensus       274 l~L~~N~l~-~vn~g~lfgLt~L~~L~lS~N-aI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~N  351 (873)
T KOG4194|consen  274 LNLETNRLQ-AVNEGWLFGLTSLEQLDLSYN-AIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHN  351 (873)
T ss_pred             eecccchhh-hhhcccccccchhhhhccchh-hhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhccccc
Confidence            444555555 444344455555555555555 555445555555555666666666665444444555556666666666


Q ss_pred             ccCCCCccccCCCCCCCeEeccCCcC
Q 046655          168 YLSGYIPPTLGRLSKLEILNLSSNDL  193 (194)
Q Consensus       168 ~l~g~~p~~~~~l~~L~~L~ls~N~l  193 (194)
                      +++......|..+++|+.|||++|.+
T Consensus       352 si~~l~e~af~~lssL~~LdLr~N~l  377 (873)
T KOG4194|consen  352 SIDHLAEGAFVGLSSLHKLDLRSNEL  377 (873)
T ss_pred             chHHHHhhHHHHhhhhhhhcCcCCeE
Confidence            65533333455566666666666654

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=99.02  E-value=2.6e-10  Score=69.44  Aligned_cols=61  Identities=39%  Similarity=0.565  Sum_probs=48.3

Q ss_pred             CCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchhhccCcccceeecccCcc
Q 046655          108 PNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLSDNYL  169 (194)
Q Consensus       108 ~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l  169 (194)
                      ++|++|++++| .++...+..|..+++|++|++++|++....|..|.++++|+++++++|++
T Consensus         1 p~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNN-KLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSS-TESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCC-CCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            46788888888 77765556778888888888888888866666788888888888888865

...

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.01  E-value=4.1e-11  Score=101.69  Aligned_cols=108  Identities=33%  Similarity=0.465  Sum_probs=83.4

Q ss_pred             eeeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCccc----------------
Q 046655           83 IGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLT----------------  146 (194)
Q Consensus        83 ~~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~----------------  146 (194)
                      .+.-+++|++|+|. +||.+-+-++..|-.|||++| .+. .+|+.+..+.+|++|.|++|.+.                
T Consensus       126 Kn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~N-rLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vL  202 (1255)
T KOG0444|consen  126 KNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNN-RLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVL  202 (1255)
T ss_pred             cCcEEEEcccCccc-cCCchHHHhhHhHhhhccccc-hhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhh
Confidence            33444777778777 777666677777788888888 666 57777777888888888887542                


Q ss_pred             ---------ccCchhhccCcccceeecccCccCCCCccccCCCCCCCeEeccCCcCC
Q 046655          147 ---------GIIPLEMGRLRNLVHLDLSDNYLSGYIPPTLGRLSKLEILNLSSNDLY  194 (194)
Q Consensus       147 ---------~~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~ls  194 (194)
                               .-+|.++..+.+|..+|++.|.+. ++|+.+-++++|+.|+||+|+|+
T Consensus       203 hms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~it  258 (1255)
T KOG0444|consen  203 HMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKIT  258 (1255)
T ss_pred             hcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCcee
Confidence                     126777778888889999999998 88998889999999999999874

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.00  E-value=4.7e-11  Score=104.53  Aligned_cols=107  Identities=28%  Similarity=0.405  Sum_probs=85.0

Q ss_pred             CCeeeeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchhhccCccc
Q 046655           80 GSVIGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNL  159 (194)
Q Consensus        80 ~~~~~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L  159 (194)
                      .....|+++++++|++. .+|...+.+++.|+.|++|+| .++ .+|..+..+..|++|...+|++. ..| ++..++.|
T Consensus       380 ~~~~hLKVLhLsyNrL~-~fpas~~~kle~LeeL~LSGN-kL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL  454 (1081)
T KOG0618|consen  380 VNFKHLKVLHLSYNRLN-SFPASKLRKLEELEELNLSGN-KLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQL  454 (1081)
T ss_pred             ccccceeeeeecccccc-cCCHHHHhchHHhHHHhcccc-hhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcc
Confidence            45567778888888888 888777888888888888888 777 57888888888888888888888 777 78888999


Q ss_pred             ceeecccCccCC-CCccccCCCCCCCeEeccCCc
Q 046655          160 VHLDLSDNYLSG-YIPPTLGRLSKLEILNLSSND  192 (194)
Q Consensus       160 ~~L~L~~N~l~g-~~p~~~~~l~~L~~L~ls~N~  192 (194)
                      +.+|++.|+++. .+|...- -++|++||+++|.
T Consensus       455 ~~lDlS~N~L~~~~l~~~~p-~p~LkyLdlSGN~  487 (1081)
T KOG0618|consen  455 KVLDLSCNNLSEVTLPEALP-SPNLKYLDLSGNT  487 (1081)
T ss_pred             eEEecccchhhhhhhhhhCC-CcccceeeccCCc
Confidence            999999998883 3333322 2789999999884

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=98.99  E-value=3.5e-11  Score=96.84  Aligned_cols=103  Identities=22%  Similarity=0.326  Sum_probs=90.6

Q ss_pred             eeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCC-CcccccCc-hhhccCcccceeecc
Q 046655           88 LWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPS-SSLTGIIP-LEMGRLRNLVHLDLS  165 (194)
Q Consensus        88 l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~-n~l~~~~p-~~~~~l~~L~~L~L~  165 (194)
                      +.|..|+|+ .||...|..+++|++|||+.| .++.+-|..|.++.++..|-+.+ |+|+ .+| ..|+++.+|+.|.+.
T Consensus        72 irLdqN~I~-~iP~~aF~~l~~LRrLdLS~N-~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-~l~k~~F~gL~slqrLllN  148 (498)
T KOG4237|consen   72 IRLDQNQIS-SIPPGAFKTLHRLRRLDLSKN-NISFIAPDAFKGLASLLSLVLYGNNKIT-DLPKGAFGGLSSLQRLLLN  148 (498)
T ss_pred             EEeccCCcc-cCChhhccchhhhceeccccc-chhhcChHhhhhhHhhhHHHhhcCCchh-hhhhhHhhhHHHHHHHhcC
Confidence            777999999 999899999999999999999 99988999999999998887766 9999 555 459999999999999


Q ss_pred             cCccCCCCccccCCCCCCCeEeccCCcC
Q 046655          166 DNYLSGYIPPTLGRLSKLEILNLSSNDL  193 (194)
Q Consensus       166 ~N~l~g~~p~~~~~l~~L~~L~ls~N~l  193 (194)
                      -|++.-.....|..++++..|.+.+|.+
T Consensus       149 an~i~Cir~~al~dL~~l~lLslyDn~~  176 (498)
T KOG4237|consen  149 ANHINCIRQDALRDLPSLSLLSLYDNKI  176 (498)
T ss_pred             hhhhcchhHHHHHHhhhcchhcccchhh
Confidence            9999877777788899998888888765

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=98.97  E-value=4.1e-11  Score=96.78  Aligned_cols=112  Identities=31%  Similarity=0.458  Sum_probs=91.5

Q ss_pred             ceeCCCCCeeeeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCcccc-CCCCCCEeecCCCcccccCchh
Q 046655           74 VSCNSAGSVIGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIA-AVSMLQTLELPSSSLTGIIPLE  152 (194)
Q Consensus        74 v~c~~~~~~~~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~-~l~~L~~L~L~~n~l~~~~p~~  152 (194)
                      +.....+.+.++..+++..|.+. .+|  +|..+..|+.++++.| .++ .+|.+.. .+.++..|||..|++. +.|.+
T Consensus       197 tlP~~lg~l~~L~~LyL~~Nki~-~lP--ef~gcs~L~Elh~g~N-~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde  270 (565)
T KOG0472|consen  197 TLPPELGGLESLELLYLRRNKIR-FLP--EFPGCSLLKELHVGEN-QIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDE  270 (565)
T ss_pred             cCChhhcchhhhHHHHhhhcccc-cCC--CCCccHHHHHHHhccc-HHH-hhHHHHhcccccceeeeccccccc-cCchH
Confidence            33345577777888888888888 887  6788888888888888 666 4666655 7888999999999998 88999


Q ss_pred             hccCcccceeecccCccCCCCccccCCCCCCCeEeccCCcC
Q 046655          153 MGRLRNLVHLDLSDNYLSGYIPPTLGRLSKLEILNLSSNDL  193 (194)
Q Consensus       153 ~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l  193 (194)
                      +..+.+|++||+++|.++ .+|.+++++ .|+.|-+.+|++
T Consensus       271 ~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPl  309 (565)
T KOG0472|consen  271 ICLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPL  309 (565)
T ss_pred             HHHhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCch
Confidence            888899999999999999 588888888 888888888875

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=98.91  E-value=1e-10  Score=102.50  Aligned_cols=110  Identities=26%  Similarity=0.366  Sum_probs=95.6

Q ss_pred             CCeeeeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchhhccCccc
Q 046655           80 GSVIGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNL  159 (194)
Q Consensus        80 ~~~~~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L  159 (194)
                      .....|+.+.+.+|.++...= +.+.+.++|+.|+|++| .+.......+.++..|+.|+|++|++. .+|..+..++.|
T Consensus       356 ~~~~~Lq~LylanN~Ltd~c~-p~l~~~~hLKVLhLsyN-rL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L  432 (1081)
T KOG0618|consen  356 NNHAALQELYLANNHLTDSCF-PVLVNFKHLKVLHLSYN-RLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRL  432 (1081)
T ss_pred             hhhHHHHHHHHhcCcccccch-hhhccccceeeeeeccc-ccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhh
Confidence            445556668889999987665 57889999999999999 777444456778999999999999999 899999999999


Q ss_pred             ceeecccCccCCCCccccCCCCCCCeEeccCCcCC
Q 046655          160 VHLDLSDNYLSGYIPPTLGRLSKLEILNLSSNDLY  194 (194)
Q Consensus       160 ~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~ls  194 (194)
                      ++|...+|++. .+| ++..+++|+.+|+|.|+++
T Consensus       433 ~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~  465 (1081)
T KOG0618|consen  433 HTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLS  465 (1081)
T ss_pred             HHHhhcCCcee-ech-hhhhcCcceEEecccchhh
Confidence            99999999999 789 7899999999999999874

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.87  E-value=1.2e-09  Score=80.38  Aligned_cols=102  Identities=23%  Similarity=0.324  Sum_probs=52.0

Q ss_pred             CeeeeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccc-cCCCCCCEeecCCCccccc-CchhhccCcc
Q 046655           81 SVIGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEI-AAVSMLQTLELPSSSLTGI-IPLEMGRLRN  158 (194)
Q Consensus        81 ~~~~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~-~~l~~L~~L~L~~n~l~~~-~p~~~~~l~~  158 (194)
                      .+..++.+++++|.|+ .+.  .+..++.|++|++++| .++. +.+.+ ..+++|+.|++++|++... .-..+..+++
T Consensus        40 ~l~~L~~L~Ls~N~I~-~l~--~l~~L~~L~~L~L~~N-~I~~-i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~  114 (175)
T PF14580_consen   40 TLDKLEVLDLSNNQIT-KLE--GLPGLPRLKTLDLSNN-RISS-ISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPK  114 (175)
T ss_dssp             T-TT--EEE-TTS--S---T--T----TT--EEE--SS----S--CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT
T ss_pred             hhcCCCEEECCCCCCc-ccc--CccChhhhhhcccCCC-CCCc-cccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCC
Confidence            4667888999999999 886  5788999999999999 8874 55544 4689999999999999742 1245778999


Q ss_pred             cceeecccCccCCCCcc----ccCCCCCCCeEec
Q 046655          159 LVHLDLSDNYLSGYIPP----TLGRLSKLEILNL  188 (194)
Q Consensus       159 L~~L~L~~N~l~g~~p~----~~~~l~~L~~L~l  188 (194)
                      |+.|++.+|.++. .+.    .+..+|+|+.||-
T Consensus       115 L~~L~L~~NPv~~-~~~YR~~vi~~lP~Lk~LD~  147 (175)
T PF14580_consen  115 LRVLSLEGNPVCE-KKNYRLFVIYKLPSLKVLDG  147 (175)
T ss_dssp             --EEE-TT-GGGG-STTHHHHHHHH-TT-SEETT
T ss_pred             cceeeccCCcccc-hhhHHHHHHHHcChhheeCC
Confidence            9999999999983 343    2567899999975

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=98.80  E-value=6.7e-10  Score=94.52  Aligned_cols=100  Identities=25%  Similarity=0.368  Sum_probs=61.7

Q ss_pred             eeccCCccccccCccccCCCCCccEEEecCCCCCc-ccCCccccCCCCCCEeecCCCcccccCchhhccCcccceeeccc
Q 046655           88 LWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLS-GSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLSD  166 (194)
Q Consensus        88 l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~-~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~  166 (194)
                      ++++.|+++ .+| ..++.++.|+.|.+.+| .++ ..+|..++++.+|+.+..++|.+. ..|+.+..|..|+.|.|+.
T Consensus       273 LNlSrNQLt-~LP-~avcKL~kL~kLy~n~N-kL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~  348 (1255)
T KOG0444|consen  273 LNLSRNQLT-VLP-DAVCKLTKLTKLYANNN-KLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDH  348 (1255)
T ss_pred             hccccchhc-cch-HHHhhhHHHHHHHhccC-cccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhcccc
Confidence            455555555 555 45555666666655555 332 235666666666666666666665 5666666666677777777


Q ss_pred             CccCCCCccccCCCCCCCeEeccCCc
Q 046655          167 NYLSGYIPPTLGRLSKLEILNLSSND  192 (194)
Q Consensus       167 N~l~g~~p~~~~~l~~L~~L~ls~N~  192 (194)
                      |++. .+|+.+.-++.|+.||+..|+
T Consensus       349 NrLi-TLPeaIHlL~~l~vLDlreNp  373 (1255)
T KOG0444|consen  349 NRLI-TLPEAIHLLPDLKVLDLRENP  373 (1255)
T ss_pred             ccee-echhhhhhcCCcceeeccCCc
Confidence            7666 567776667777777776663

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=98.75  E-value=1.7e-08  Score=89.47  Aligned_cols=76  Identities=30%  Similarity=0.406  Sum_probs=51.8

Q ss_pred             CccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchhhccCcccceeecccCccCCCCccccCCCCCCCeEec
Q 046655          109 NLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLSDNYLSGYIPPTLGRLSKLEILNL  188 (194)
Q Consensus       109 ~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~l  188 (194)
                      .|+.|++++| .+++ +|..   .++|+.|++++|+++ .+|..   ..+|+.|++++|+++ .+|..+.++++|+.|++
T Consensus       383 ~L~~LdLs~N-~Lt~-LP~l---~s~L~~LdLS~N~Ls-sIP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdL  452 (788)
T PRK15387        383 GLKELIVSGN-RLTS-LPVL---PSELKELMVSGNRLT-SLPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNL  452 (788)
T ss_pred             ccceEEecCC-cccC-CCCc---ccCCCEEEccCCcCC-CCCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEEC
Confidence            3445555555 4442 3322   245666666666666 35543   245778888888888 78999999999999999


Q ss_pred             cCCcCC
Q 046655          189 SSNDLY  194 (194)
Q Consensus       189 s~N~ls  194 (194)
                      ++|+|+
T Consensus       453 s~N~Ls  458 (788)
T PRK15387        453 EGNPLS  458 (788)
T ss_pred             CCCCCC
Confidence            999885

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.74  E-value=1e-09  Score=92.03  Aligned_cols=108  Identities=27%  Similarity=0.502  Sum_probs=72.8

Q ss_pred             CCCeeeeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchhhccCc-
Q 046655           79 AGSVIGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLR-  157 (194)
Q Consensus        79 ~~~~~~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~-  157 (194)
                      ...+..+.+++|+.|+++ .+| ..++.++ |+.|-+++| +++ .+|+.++.+..|..|+.+.|.+. .+|..++++. 
T Consensus       117 i~~L~~lt~l~ls~NqlS-~lp-~~lC~lp-Lkvli~sNN-kl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~s  190 (722)
T KOG0532|consen  117 ICNLEALTFLDLSSNQLS-HLP-DGLCDLP-LKVLIVSNN-KLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTS  190 (722)
T ss_pred             hhhhhHHHHhhhccchhh-cCC-hhhhcCc-ceeEEEecC-ccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHH
Confidence            345666666777777777 777 4566655 777777777 555 46666666666666666666665 3444333333 


Q ss_pred             ---------------------ccceeecccCccCCCCccccCCCCCCCeEeccCCcC
Q 046655          158 ---------------------NLVHLDLSDNYLSGYIPPTLGRLSKLEILNLSSNDL  193 (194)
Q Consensus       158 ---------------------~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l  193 (194)
                                           .|..||++.|+++ .+|-.|.+++.|++|-|.+|++
T Consensus       191 lr~l~vrRn~l~~lp~El~~LpLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPL  246 (722)
T KOG0532|consen  191 LRDLNVRRNHLEDLPEELCSLPLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPL  246 (722)
T ss_pred             HHHHHHhhhhhhhCCHHHhCCceeeeecccCcee-ecchhhhhhhhheeeeeccCCC
Confidence                                 3566788888888 7788888888888888888876

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=98.72  E-value=3.7e-08  Score=87.40  Aligned_cols=97  Identities=28%  Similarity=0.448  Sum_probs=65.6

Q ss_pred             eeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchhhccCcccceee
Q 046655           84 GVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLD  163 (194)
Q Consensus        84 ~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~  163 (194)
                      .+..+++++|+++ .+| ..+.  ++|++|++++| .++ .+|..+.  .+|+.|+|++|++. .+|..+.  .+|+.|+
T Consensus       200 ~L~~L~Ls~N~Lt-sLP-~~l~--~nL~~L~Ls~N-~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~  268 (754)
T PRK15370        200 QITTLILDNNELK-SLP-ENLQ--GNIKTLYANSN-QLT-SIPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLD  268 (754)
T ss_pred             CCcEEEecCCCCC-cCC-hhhc--cCCCEEECCCC-ccc-cCChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEE
Confidence            3445677777777 677 3332  46788888887 666 4565443  46777778777777 6676654  4678888


Q ss_pred             cccCccCCCCccccCCCCCCCeEeccCCcCC
Q 046655          164 LSDNYLSGYIPPTLGRLSKLEILNLSSNDLY  194 (194)
Q Consensus       164 L~~N~l~g~~p~~~~~l~~L~~L~ls~N~ls  194 (194)
                      +++|+++ .+|..+.  ++|+.|++++|+|+
T Consensus       269 Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt  296 (754)
T PRK15370        269 LFHNKIS-CLPENLP--EELRYLSVYDNSIR  296 (754)
T ss_pred             CcCCccC-ccccccC--CCCcEEECCCCccc
Confidence            8888887 5676553  47788888877663

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.70  E-value=1.7e-09  Score=84.80  Aligned_cols=105  Identities=25%  Similarity=0.366  Sum_probs=60.5

Q ss_pred             eeeeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchhhccCcccce
Q 046655           82 VIGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVH  161 (194)
Q Consensus        82 ~~~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~  161 (194)
                      +..++.++++.|.|. .+.  .+..+++|+.||+++| .++. +...-.++.+..+|.|+.|.+...  +.++++-+|..
T Consensus       306 ~Pkir~L~lS~N~i~-~v~--nLa~L~~L~~LDLS~N-~Ls~-~~Gwh~KLGNIKtL~La~N~iE~L--SGL~KLYSLvn  378 (490)
T KOG1259|consen  306 APKLRRLILSQNRIR-TVQ--NLAELPQLQLLDLSGN-LLAE-CVGWHLKLGNIKTLKLAQNKIETL--SGLRKLYSLVN  378 (490)
T ss_pred             ccceeEEecccccee-eeh--hhhhcccceEeecccc-hhHh-hhhhHhhhcCEeeeehhhhhHhhh--hhhHhhhhhee
Confidence            344445555555555 443  2445555555555555 4442 222223445555555555555421  44666777888


Q ss_pred             eecccCccCCCCc--cccCCCCCCCeEeccCCcCC
Q 046655          162 LDLSDNYLSGYIP--PTLGRLSKLEILNLSSNDLY  194 (194)
Q Consensus       162 L~L~~N~l~g~~p--~~~~~l~~L~~L~ls~N~ls  194 (194)
                      ||+++|++. .+.  ..++++|.|+++.|.+|+++
T Consensus       379 LDl~~N~Ie-~ldeV~~IG~LPCLE~l~L~~NPl~  412 (490)
T KOG1259|consen  379 LDLSSNQIE-ELDEVNHIGNLPCLETLRLTGNPLA  412 (490)
T ss_pred             ccccccchh-hHHHhcccccccHHHHHhhcCCCcc
Confidence            888888877 222  24778888888888888763

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.68  E-value=2.7e-09  Score=89.66  Aligned_cols=92  Identities=21%  Similarity=0.436  Sum_probs=73.5

Q ss_pred             CCeeeeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchhhccCccc
Q 046655           80 GSVIGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNL  159 (194)
Q Consensus        80 ~~~~~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L  159 (194)
                      +....+..++.+.|++. .+| ..++.+.+|+.|.+..| .+. .+|+++..|+ |..||++.|++. .+|-.|.+|..|
T Consensus       163 g~~~tl~~ld~s~nei~-slp-sql~~l~slr~l~vrRn-~l~-~lp~El~~Lp-Li~lDfScNkis-~iPv~fr~m~~L  236 (722)
T KOG0532|consen  163 GLLPTLAHLDVSKNEIQ-SLP-SQLGYLTSLRDLNVRRN-HLE-DLPEELCSLP-LIRLDFSCNKIS-YLPVDFRKMRHL  236 (722)
T ss_pred             ccchhHHHhhhhhhhhh-hch-HHhhhHHHHHHHHHhhh-hhh-hCCHHHhCCc-eeeeecccCcee-ecchhhhhhhhh
Confidence            34444555777777777 777 67778888888888888 665 5788887554 999999999999 899999999999


Q ss_pred             ceeecccCccCCCCccccC
Q 046655          160 VHLDLSDNYLSGYIPPTLG  178 (194)
Q Consensus       160 ~~L~L~~N~l~g~~p~~~~  178 (194)
                      ++|.|.+|.++ .-|..+.
T Consensus       237 q~l~LenNPLq-SPPAqIC  254 (722)
T KOG0532|consen  237 QVLQLENNPLQ-SPPAQIC  254 (722)
T ss_pred             eeeeeccCCCC-CChHHHH
Confidence            99999999999 5566553

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.67  E-value=4.1e-09  Score=82.72  Aligned_cols=98  Identities=26%  Similarity=0.304  Sum_probs=71.8

Q ss_pred             eeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchhhccCcccceeecccC
Q 046655           88 LWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLSDN  167 (194)
Q Consensus        88 l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N  167 (194)
                      +++++|.|+ .+. ++..-.|.++.|++++| .+.. + ..+..+++|+.|||++|.++ .+-.+-.++.+++.|.|++|
T Consensus       289 lDLS~N~I~-~iD-ESvKL~Pkir~L~lS~N-~i~~-v-~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N  362 (490)
T KOG1259|consen  289 LDLSGNLIT-QID-ESVKLAPKLRRLILSQN-RIRT-V-QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQN  362 (490)
T ss_pred             ccccccchh-hhh-hhhhhccceeEEecccc-ceee-e-hhhhhcccceEeecccchhH-hhhhhHhhhcCEeeeehhhh
Confidence            777888877 777 66666778888888888 6552 2 33677788888888888877 55555556777788888888


Q ss_pred             ccCCCCccccCCCCCCCeEeccCCcC
Q 046655          168 YLSGYIPPTLGRLSKLEILNLSSNDL  193 (194)
Q Consensus       168 ~l~g~~p~~~~~l~~L~~L~ls~N~l  193 (194)
                      .+. .+ +.++++-+|..||+++|+|
T Consensus       363 ~iE-~L-SGL~KLYSLvnLDl~~N~I  386 (490)
T KOG1259|consen  363 KIE-TL-SGLRKLYSLVNLDLSSNQI  386 (490)
T ss_pred             hHh-hh-hhhHhhhhheeccccccch
Confidence            776 22 3467788889999999876

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.63  E-value=1.1e-08  Score=81.88  Aligned_cols=85  Identities=31%  Similarity=0.443  Sum_probs=39.9

Q ss_pred             CCccEEEecCCCCCccc----CCccccCCCCCCEeecCCCccccc----CchhhccCcccceeecccCccCCC----Ccc
Q 046655          108 PNLKSFKIHSNYLLSGS----IPSEIAAVSMLQTLELPSSSLTGI----IPLEMGRLRNLVHLDLSDNYLSGY----IPP  175 (194)
Q Consensus       108 ~~L~~L~l~~n~~l~~~----~p~~~~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~L~~N~l~g~----~p~  175 (194)
                      ++|+.|++++| .+++.    ++..+..+++|++|++++|.+.+.    ++..+...++|+.|++++|.+++.    ++.
T Consensus       137 ~~L~~L~L~~n-~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~  215 (319)
T cd00116         137 PALEKLVLGRN-RLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAE  215 (319)
T ss_pred             CCceEEEcCCC-cCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHH
Confidence            45555555555 44421    222333444555555555555421    222233334555555555555421    222


Q ss_pred             ccCCCCCCCeEeccCCcC
Q 046655          176 TLGRLSKLEILNLSSNDL  193 (194)
Q Consensus       176 ~~~~l~~L~~L~ls~N~l  193 (194)
                      .+..+++|++|++++|++
T Consensus       216 ~~~~~~~L~~L~ls~n~l  233 (319)
T cd00116         216 TLASLKSLEVLNLGDNNL  233 (319)
T ss_pred             HhcccCCCCEEecCCCcC
Confidence            344455555555555544

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=98.61  E-value=1.3e-08  Score=82.26  Aligned_cols=98  Identities=24%  Similarity=0.252  Sum_probs=86.7

Q ss_pred             cccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchhhccCcccceeecccCccCCCCc
Q 046655           95 ITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLSDNYLSGYIP  174 (194)
Q Consensus        95 l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~g~~p  174 (194)
                      .-+..|...|..+++|+++++++| .+++.-+..|.++..++.|.|..|++...--.-|.++..|+.|+|.+|+|+-.-|
T Consensus       261 ~d~~cP~~cf~~L~~L~~lnlsnN-~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~  339 (498)
T KOG4237|consen  261 PDSICPAKCFKKLPNLRKLNLSNN-KITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAP  339 (498)
T ss_pred             cCCcChHHHHhhcccceEeccCCC-ccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEec
Confidence            333566667899999999999999 9998889999999999999999999985555668999999999999999998888


Q ss_pred             cccCCCCCCCeEeccCCcC
Q 046655          175 PTLGRLSKLEILNLSSNDL  193 (194)
Q Consensus       175 ~~~~~l~~L~~L~ls~N~l  193 (194)
                      ..|..+.+|..|.+-.|++
T Consensus       340 ~aF~~~~~l~~l~l~~Np~  358 (498)
T KOG4237|consen  340 GAFQTLFSLSTLNLLSNPF  358 (498)
T ss_pred             ccccccceeeeeehccCcc
Confidence            8999999999999988876

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.60  E-value=1.1e-08  Score=81.85  Aligned_cols=113  Identities=20%  Similarity=0.276  Sum_probs=84.1

Q ss_pred             CCeeeeeeeeccCCccccccCccccCCCCC---ccEEEecCCCCCcc----cCCccccCC-CCCCEeecCCCccccc---
Q 046655           80 GSVIGVSLLWYENDNITGELGRFKFSCFPN---LKSFKIHSNYLLSG----SIPSEIAAV-SMLQTLELPSSSLTGI---  148 (194)
Q Consensus        80 ~~~~~l~~l~l~~n~l~~~lp~~~~~~l~~---L~~L~l~~n~~l~~----~~p~~~~~l-~~L~~L~L~~n~l~~~---  148 (194)
                      .....|+.+++++|.+.+..+ ..+..+..   |++|++++| .+.+    .+...+..+ ++|+.|++++|.+++.   
T Consensus        78 ~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~~~~L~~L~ls~~-~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~  155 (319)
T cd00116          78 TKGCGLQELDLSDNALGPDGC-GVLESLLRSSSLQELKLNNN-GLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCE  155 (319)
T ss_pred             HhcCceeEEEccCCCCChhHH-HHHHHHhccCcccEEEeeCC-ccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHH
Confidence            446788888999998875444 44544444   999999999 6662    223345566 8999999999999843   


Q ss_pred             -CchhhccCcccceeecccCccCC----CCccccCCCCCCCeEeccCCcCC
Q 046655          149 -IPLEMGRLRNLVHLDLSDNYLSG----YIPPTLGRLSKLEILNLSSNDLY  194 (194)
Q Consensus       149 -~p~~~~~l~~L~~L~L~~N~l~g----~~p~~~~~l~~L~~L~ls~N~ls  194 (194)
                       ++..+..+++|+.|++++|.+++    .++..+..+++|++|++++|.++
T Consensus       156 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~  206 (319)
T cd00116         156 ALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLT  206 (319)
T ss_pred             HHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccC
Confidence             34456677899999999999984    23445566789999999999763

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PLN03210 Resistant to P

Probab=98.58  E-value=2.3e-07  Score=86.43  Aligned_cols=103  Identities=22%  Similarity=0.275  Sum_probs=64.5

Q ss_pred             eeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchhhccCcccceee
Q 046655           84 GVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLD  163 (194)
Q Consensus        84 ~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~  163 (194)
                      +|..+++.+|++. .++ ..+..+++|+.++++++ .....+| .+..+++|++|+|++|.....+|..++.+++|+.|+
T Consensus       612 ~L~~L~L~~s~l~-~L~-~~~~~l~~Lk~L~Ls~~-~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~  687 (1153)
T PLN03210        612 NLVKLQMQGSKLE-KLW-DGVHSLTGLRNIDLRGS-KNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLD  687 (1153)
T ss_pred             CCcEEECcCcccc-ccc-cccccCCCCCEEECCCC-CCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEe
Confidence            3444556666666 555 45566777777777766 3223444 366677777777777655556777777777777777


Q ss_pred             cccCccCCCCccccCCCCCCCeEeccCC
Q 046655          164 LSDNYLSGYIPPTLGRLSKLEILNLSSN  191 (194)
Q Consensus       164 L~~N~l~g~~p~~~~~l~~L~~L~ls~N  191 (194)
                      +++|..-+.+|..+ ++++|+.|++++|
T Consensus       688 L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc  714 (1153)
T PLN03210        688 MSRCENLEILPTGI-NLKSLYRLNLSGC  714 (1153)
T ss_pred             CCCCCCcCccCCcC-CCCCCCEEeCCCC
Confidence            77654333566554 5566666666654

syringae 6; Provisional

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=98.56  E-value=6.6e-08  Score=85.83  Aligned_cols=99  Identities=21%  Similarity=0.363  Sum_probs=65.0

Q ss_pred             eeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchhhccCcccceee
Q 046655           84 GVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLD  163 (194)
Q Consensus        84 ~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~  163 (194)
                      +|..+.+++|.++ .+| ..+.  ++|+.|++++| .++ .+|..+.  +.|+.|++++|++. .+|..+.  ..|+.|+
T Consensus       326 sL~~L~Ls~N~Lt-~LP-~~l~--~sL~~L~Ls~N-~L~-~LP~~lp--~~L~~LdLs~N~Lt-~LP~~l~--~sL~~Ld  394 (754)
T PRK15370        326 GLKTLEAGENALT-SLP-ASLP--PELQVLDVSKN-QIT-VLPETLP--PTITTLDVSRNALT-NLPENLP--AALQIMQ  394 (754)
T ss_pred             cceeccccCCccc-cCC-hhhc--CcccEEECCCC-CCC-cCChhhc--CCcCEEECCCCcCC-CCCHhHH--HHHHHHh
Confidence            3444555666665 455 3332  56777777777 665 3555442  56778888888777 5666654  3677888


Q ss_pred             cccCccCCCCcccc----CCCCCCCeEeccCCcCC
Q 046655          164 LSDNYLSGYIPPTL----GRLSKLEILNLSSNDLY  194 (194)
Q Consensus       164 L~~N~l~g~~p~~~----~~l~~L~~L~ls~N~ls  194 (194)
                      +++|+++ .+|..+    ..++++..+++.+|+|+
T Consensus       395 Ls~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls  428 (754)
T PRK15370        395 ASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS  428 (754)
T ss_pred             hccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence            8888887 455543    34577888999988874

>PLN03210 Resistant to P

Probab=98.52  E-value=2.8e-07  Score=85.89  Aligned_cols=103  Identities=21%  Similarity=0.377  Sum_probs=56.2

Q ss_pred             eeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecC---------------------C
Q 046655           84 GVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELP---------------------S  142 (194)
Q Consensus        84 ~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~---------------------~  142 (194)
                      +|+.+++++|...+.+| ..+..+++|+.|++++|..+. .+|..+ .+++|+.|+++                     +
T Consensus       779 sL~~L~Ls~n~~l~~lP-~si~~L~~L~~L~Ls~C~~L~-~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~  855 (1153)
T PLN03210        779 SLTRLFLSDIPSLVELP-SSIQNLHKLEHLEIENCINLE-TLPTGI-NLESLESLDLSGCSRLRTFPDISTNISDLNLSR  855 (1153)
T ss_pred             cchheeCCCCCCccccC-hhhhCCCCCCEEECCCCCCcC-eeCCCC-CccccCEEECCCCCccccccccccccCEeECCC
Confidence            45556666666555677 567777777777777663333 455443 34445555554                     4


Q ss_pred             CcccccCchhhccCcccceeeccc-CccCCCCccccCCCCCCCeEeccCC
Q 046655          143 SSLTGIIPLEMGRLRNLVHLDLSD-NYLSGYIPPTLGRLSKLEILNLSSN  191 (194)
Q Consensus       143 n~l~~~~p~~~~~l~~L~~L~L~~-N~l~g~~p~~~~~l~~L~~L~ls~N  191 (194)
                      |.+. .+|..+..+++|+.|++++ |+++ .+|..+..+++|+.++++++
T Consensus       856 n~i~-~iP~si~~l~~L~~L~L~~C~~L~-~l~~~~~~L~~L~~L~l~~C  903 (1153)
T PLN03210        856 TGIE-EVPWWIEKFSNLSFLDMNGCNNLQ-RVSLNISKLKHLETVDFSDC  903 (1153)
T ss_pred             CCCc-cChHHHhcCCCCCEEECCCCCCcC-ccCcccccccCCCeeecCCC
Confidence            4444 4455555555555555554 2344 34444555555555555543

syringae 6; Provisional

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.43  E-value=1e-07  Score=78.86  Aligned_cols=105  Identities=34%  Similarity=0.507  Sum_probs=80.0

Q ss_pred             eeeeeeeeccCCccccccCccccCCCC-CccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchhhccCcccc
Q 046655           82 VIGVSLLWYENDNITGELGRFKFSCFP-NLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLV  160 (194)
Q Consensus        82 ~~~l~~l~l~~n~l~~~lp~~~~~~l~-~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~  160 (194)
                      +..+..+.+.+|+++ .++ .....+. +|+.|++++| .+. .+|..+..+++|+.|++++|++. .+|...+..+.|+
T Consensus       115 ~~~l~~L~l~~n~i~-~i~-~~~~~~~~nL~~L~l~~N-~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~  189 (394)
T COG4886         115 LTNLTSLDLDNNNIT-DIP-PLIGLLKSNLKELDLSDN-KIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLN  189 (394)
T ss_pred             ccceeEEecCCcccc-cCc-cccccchhhccccccccc-chh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhh
Confidence            345666777888888 777 5556663 8888888888 665 45566788888888888888888 6777666778888


Q ss_pred             eeecccCccCCCCccccCCCCCCCeEeccCCc
Q 046655          161 HLDLSDNYLSGYIPPTLGRLSKLEILNLSSND  192 (194)
Q Consensus       161 ~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~  192 (194)
                      .+++++|+++ .+|........|+.+++++|+
T Consensus       190 ~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~  220 (394)
T COG4886         190 NLDLSGNKIS-DLPPEIELLSALEELDLSNNS  220 (394)
T ss_pred             heeccCCccc-cCchhhhhhhhhhhhhhcCCc
Confidence            8888888888 777766666668888888773

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.42  E-value=2.3e-07  Score=52.47  Aligned_cols=37  Identities=38%  Similarity=0.562  Sum_probs=27.4

Q ss_pred             CCCCEeecCCCcccccCchhhccCcccceeecccCccC
Q 046655          133 SMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLSDNYLS  170 (194)
Q Consensus       133 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~  170 (194)
                      ++|++|++++|+++ .+|+.++++++|+.|++++|+++
T Consensus         1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            36788888888888 56767788888888888888877

...

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.42  E-value=1.3e-07  Score=85.33  Aligned_cols=104  Identities=24%  Similarity=0.394  Sum_probs=85.4

Q ss_pred             eeeeeeccCCc--cccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchhhccCcccce
Q 046655           84 GVSLLWYENDN--ITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVH  161 (194)
Q Consensus        84 ~l~~l~l~~n~--l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~  161 (194)
                      .++.+-+.+|.  +. .++...|..++.|++||+++| .--+.+|..++.+-+|++|++++..++ .+|..++++..|.+
T Consensus       546 ~L~tLll~~n~~~l~-~is~~ff~~m~~LrVLDLs~~-~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~  622 (889)
T KOG4658|consen  546 KLRTLLLQRNSDWLL-EISGEFFRSLPLLRVLDLSGN-SSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIY  622 (889)
T ss_pred             ccceEEEeecchhhh-hcCHHHHhhCcceEEEECCCC-CccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhhe
Confidence            45555666665  44 566445788999999999999 444579999999999999999999999 89999999999999


Q ss_pred             eecccCccCCCCccccCCCCCCCeEeccC
Q 046655          162 LDLSDNYLSGYIPPTLGRLSKLEILNLSS  190 (194)
Q Consensus       162 L~L~~N~l~g~~p~~~~~l~~L~~L~ls~  190 (194)
                      |++..+.-...+|.....+++|++|.+..
T Consensus       623 Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~  651 (889)
T KOG4658|consen  623 LNLEVTGRLESIPGILLELQSLRVLRLPR  651 (889)
T ss_pred             eccccccccccccchhhhcccccEEEeec
Confidence            99998876556677777799999998854

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=98.42  E-value=7.3e-07  Score=79.28  Aligned_cols=98  Identities=32%  Similarity=0.408  Sum_probs=54.9

Q ss_pred             eeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccC-----------------CCCCCEeecCCCcccc
Q 046655           85 VSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAA-----------------VSMLQTLELPSSSLTG  147 (194)
Q Consensus        85 l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~-----------------l~~L~~L~L~~n~l~~  147 (194)
                      ++.|.+.+|+++ .+| .   .+++|++|++++| .++ .+|.....                 ..+|+.|++++|++. 
T Consensus       224 L~~L~L~~N~Lt-~LP-~---lp~~Lk~LdLs~N-~Lt-sLP~lp~sL~~L~Ls~N~L~~Lp~lp~~L~~L~Ls~N~Lt-  295 (788)
T PRK15387        224 ITTLVIPDNNLT-SLP-A---LPPELRTLEVSGN-QLT-SLPVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLT-  295 (788)
T ss_pred             CCEEEccCCcCC-CCC-C---CCCCCcEEEecCC-ccC-cccCcccccceeeccCCchhhhhhchhhcCEEECcCCccc-
Confidence            444556666666 555 2   2456666666666 555 23432111                 123455555555555 


Q ss_pred             cCchhhccCcccceeecccCccCCCCccc---cC----------CC----CCCCeEeccCCcCC
Q 046655          148 IIPLEMGRLRNLVHLDLSDNYLSGYIPPT---LG----------RL----SKLEILNLSSNDLY  194 (194)
Q Consensus       148 ~~p~~~~~l~~L~~L~L~~N~l~g~~p~~---~~----------~l----~~L~~L~ls~N~ls  194 (194)
                      .+|.   .+++|+.|++++|++++ +|..   +.          .+    .+|++|++++|+|+
T Consensus       296 ~LP~---~p~~L~~LdLS~N~L~~-Lp~lp~~L~~L~Ls~N~L~~LP~lp~~Lq~LdLS~N~Ls  355 (788)
T PRK15387        296 SLPV---LPPGLQELSVSDNQLAS-LPALPSELCKLWAYNNQLTSLPTLPSGLQELSVSDNQLA  355 (788)
T ss_pred             cccc---cccccceeECCCCcccc-CCCCcccccccccccCccccccccccccceEecCCCccC
Confidence            3443   23678888888888884 4431   11          11    26778888888764

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.39  E-value=1.9e-08  Score=70.43  Aligned_cols=81  Identities=25%  Similarity=0.410  Sum_probs=38.8

Q ss_pred             eeeeeccCCccccccCccccCC-CCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchhhccCcccceee
Q 046655           85 VSLLWYENDNITGELGRFKFSC-FPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLD  163 (194)
Q Consensus        85 l~~l~l~~n~l~~~lp~~~~~~-l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~  163 (194)
                      |...++++|.+. .+| +.|.. ++.++.+++++| .++ .+|+++..++.|+.|+++.|.+. ..|..+..+.++..|+
T Consensus        55 l~~i~ls~N~fk-~fp-~kft~kf~t~t~lNl~~n-eis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Ld  129 (177)
T KOG4579|consen   55 LTKISLSDNGFK-KFP-KKFTIKFPTATTLNLANN-EIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLD  129 (177)
T ss_pred             EEEEecccchhh-hCC-HHHhhccchhhhhhcchh-hhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhc
Confidence            333444555555 444 33332 234555555555 444 34555555555555555555554 3444444455555555


Q ss_pred             cccCccC
Q 046655          164 LSDNYLS  170 (194)
Q Consensus       164 L~~N~l~  170 (194)
                      ..+|.+.
T Consensus       130 s~~na~~  136 (177)
T KOG4579|consen  130 SPENARA  136 (177)
T ss_pred             CCCCccc
Confidence            5554444

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.35  E-value=3.9e-07  Score=51.53  Aligned_cols=36  Identities=25%  Similarity=0.595  Sum_probs=20.5

Q ss_pred             CccEEEecCCCCCcccCCccccCCCCCCEeecCCCccc
Q 046655          109 NLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLT  146 (194)
Q Consensus       109 ~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~  146 (194)
                      +|++|++++| .++ .+|+.+++|++|+.|++++|+++
T Consensus         2 ~L~~L~l~~N-~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNN-QIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSS-S-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCC-CCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            4566666666 555 34555666666666666666665

...

>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=98.35  E-value=2.7e-07  Score=51.97  Aligned_cols=39  Identities=23%  Similarity=0.484  Sum_probs=27.4

Q ss_pred             CCchhHHHHHHHhhcC-CCCCCCCCCCCC-CCCCcccccceeC
Q 046655           37 LLSSPKLLEREALLAT-GWWVNNWATGNY-TSYHCKWTGVSCN   77 (194)
Q Consensus        37 ~~~~~l~~~~~~~~~~-~~~~~~w~~~~~-~~~~c~~~gv~c~   77 (194)
                      .|.++|++||..+..+ ...+.+|.  .. ..++|+|.||+|+
T Consensus         3 ~d~~aLl~~k~~l~~~~~~~l~~W~--~~~~~~~C~W~GV~Cd   43 (43)
T PF08263_consen    3 QDRQALLAFKKSLNNDPSGVLSSWN--PSSDSDPCSWSGVTCD   43 (43)
T ss_dssp             HHHHHHHHHHHCTT-SC-CCCTT----TT--S-CCCSTTEEE-
T ss_pred             HHHHHHHHHHHhcccccCcccccCC--CcCCCCCeeeccEEeC
Confidence            4678999999999864 47889993  22 3799999999995

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.26  E-value=4.2e-07  Score=75.26  Aligned_cols=79  Identities=30%  Similarity=0.450  Sum_probs=46.3

Q ss_pred             eeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchhhccCcccceee
Q 046655           84 GVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLD  163 (194)
Q Consensus        84 ~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~  163 (194)
                      +|..+++++|++. .+| ..+..++.|+.|+++.| .+. .+|.....+++|+.|++++|++. .+|........|+.+.
T Consensus       141 nL~~L~l~~N~i~-~l~-~~~~~l~~L~~L~l~~N-~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~  215 (394)
T COG4886         141 NLKELDLSDNKIE-SLP-SPLRNLPNLKNLDLSFN-DLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELD  215 (394)
T ss_pred             hcccccccccchh-hhh-hhhhccccccccccCCc-hhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhh
Confidence            5666666777776 665 45666677777777777 555 34544445566666666666666 4554443344455555


Q ss_pred             cccC
Q 046655          164 LSDN  167 (194)
Q Consensus       164 L~~N  167 (194)
                      +++|
T Consensus       216 ~~~N  219 (394)
T COG4886         216 LSNN  219 (394)
T ss_pred             hcCC
Confidence            5444

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.15  E-value=2e-07  Score=65.44  Aligned_cols=104  Identities=20%  Similarity=0.285  Sum_probs=80.6

Q ss_pred             eeeeeccCCccccccCc--cccCCCCCccEEEecCCCCCcccCCccccC-CCCCCEeecCCCcccccCchhhccCcccce
Q 046655           85 VSLLWYENDNITGELGR--FKFSCFPNLKSFKIHSNYLLSGSIPSEIAA-VSMLQTLELPSSSLTGIIPLEMGRLRNLVH  161 (194)
Q Consensus        85 l~~l~l~~n~l~~~lp~--~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~-l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~  161 (194)
                      +..++|+.+++. .+++  ..+....+|+..++++| .+. .+|+.|.. .+..+++++++|.++ .+|.++..++.|+.
T Consensus        29 ~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N-~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~  104 (177)
T KOG4579|consen   29 LHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDN-GFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRS  104 (177)
T ss_pred             hhhcccccchhh-HHHHHHHHHhCCceEEEEecccc-hhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhh
Confidence            334556666665 4541  12344566788899999 777 46766654 458999999999999 88999999999999


Q ss_pred             eecccCccCCCCccccCCCCCCCeEeccCCcC
Q 046655          162 LDLSDNYLSGYIPPTLGRLSKLEILNLSSNDL  193 (194)
Q Consensus       162 L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l  193 (194)
                      ++++.|.+. ..|..+..+.++..||..+|.+
T Consensus       105 lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~  135 (177)
T KOG4579|consen  105 LNLRFNPLN-AEPRVIAPLIKLDMLDSPENAR  135 (177)
T ss_pred             cccccCccc-cchHHHHHHHhHHHhcCCCCcc
Confidence            999999999 7888888889999998887753

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.99  E-value=1.3e-07  Score=81.82  Aligned_cols=104  Identities=30%  Similarity=0.388  Sum_probs=70.0

Q ss_pred             eeeeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCcc-ccCCCCCCEeecCCCcccccCchhhccCcccc
Q 046655           82 VIGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSE-IAAVSMLQTLELPSSSLTGIIPLEMGRLRNLV  160 (194)
Q Consensus        82 ~~~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~-~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~  160 (194)
                      +..++.|+|++|++. .+.  .+..+++|++||+++| .+. .+|.. ...+. |+.|.+++|.++..  ..+.++.+|+
T Consensus       186 l~ale~LnLshNk~~-~v~--~Lr~l~~LkhLDlsyN-~L~-~vp~l~~~gc~-L~~L~lrnN~l~tL--~gie~LksL~  257 (1096)
T KOG1859|consen  186 LPALESLNLSHNKFT-KVD--NLRRLPKLKHLDLSYN-CLR-HVPQLSMVGCK-LQLLNLRNNALTTL--RGIENLKSLY  257 (1096)
T ss_pred             HHHhhhhccchhhhh-hhH--HHHhcccccccccccc-hhc-cccccchhhhh-heeeeecccHHHhh--hhHHhhhhhh
Confidence            344555788888877 554  5667788888888888 666 34421 22333 88888888888733  4467788888


Q ss_pred             eeecccCccCCCCc-cccCCCCCCCeEeccCCcC
Q 046655          161 HLDLSDNYLSGYIP-PTLGRLSKLEILNLSSNDL  193 (194)
Q Consensus       161 ~L~L~~N~l~g~~p-~~~~~l~~L~~L~ls~N~l  193 (194)
                      .||++.|-+.+--. .-++.+..|+.|+|.+|++
T Consensus       258 ~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl  291 (1096)
T KOG1859|consen  258 GLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL  291 (1096)
T ss_pred             ccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence            88888888774211 1245667778888888875

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=97.99  E-value=1.9e-06  Score=71.99  Aligned_cols=107  Identities=23%  Similarity=0.342  Sum_probs=57.8

Q ss_pred             CCCeeeeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchhhccCcc
Q 046655           79 AGSVIGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRN  158 (194)
Q Consensus        79 ~~~~~~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~  158 (194)
                      .+.++++..+++.+|+|. .+. ..+..+++|++|++++| .++..  ..+..++.|+.|++++|.++..  ..+..++.
T Consensus        91 l~~~~~l~~l~l~~n~i~-~i~-~~l~~~~~L~~L~ls~N-~I~~i--~~l~~l~~L~~L~l~~N~i~~~--~~~~~l~~  163 (414)
T KOG0531|consen   91 LSKLKSLEALDLYDNKIE-KIE-NLLSSLVNLQVLDLSFN-KITKL--EGLSTLTLLKELNLSGNLISDI--SGLESLKS  163 (414)
T ss_pred             cccccceeeeeccccchh-hcc-cchhhhhcchheecccc-ccccc--cchhhccchhhheeccCcchhc--cCCccchh
Confidence            344555555666666666 444 22455666666666666 55432  2244555566666666666522  33444566


Q ss_pred             cceeecccCccCCCCccc-cCCCCCCCeEeccCCcC
Q 046655          159 LVHLDLSDNYLSGYIPPT-LGRLSKLEILNLSSNDL  193 (194)
Q Consensus       159 L~~L~L~~N~l~g~~p~~-~~~l~~L~~L~ls~N~l  193 (194)
                      |+.+++++|+++. +... ...+.+++.+++.+|.+
T Consensus       164 L~~l~l~~n~i~~-ie~~~~~~~~~l~~l~l~~n~i  198 (414)
T KOG0531|consen  164 LKLLDLSYNRIVD-IENDELSELISLEELDLGGNSI  198 (414)
T ss_pred             hhcccCCcchhhh-hhhhhhhhccchHHHhccCCch
Confidence            6666666666662 2221 34455555555555543

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.98  E-value=1.1e-05  Score=60.09  Aligned_cols=99  Identities=18%  Similarity=0.241  Sum_probs=75.1

Q ss_pred             eeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCc--hhhccCcccceee
Q 046655           86 SLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIP--LEMGRLRNLVHLD  163 (194)
Q Consensus        86 ~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p--~~~~~l~~L~~L~  163 (194)
                      ..++|++|++- .++  .|..++.|.+|.+..| .++...|.--..+++|..|.|.+|++. .+-  ..+..++.|++|.
T Consensus        45 d~iDLtdNdl~-~l~--~lp~l~rL~tLll~nN-rIt~I~p~L~~~~p~l~~L~LtnNsi~-~l~dl~pLa~~p~L~~Lt  119 (233)
T KOG1644|consen   45 DAIDLTDNDLR-KLD--NLPHLPRLHTLLLNNN-RITRIDPDLDTFLPNLKTLILTNNSIQ-ELGDLDPLASCPKLEYLT  119 (233)
T ss_pred             ceecccccchh-hcc--cCCCccccceEEecCC-cceeeccchhhhccccceEEecCcchh-hhhhcchhccCCccceee
Confidence            34778888887 665  5778899999999999 888655544445678999999999886 322  3367889999999


Q ss_pred             cccCccCCCCcc----ccCCCCCCCeEeccC
Q 046655          164 LSDNYLSGYIPP----TLGRLSKLEILNLSS  190 (194)
Q Consensus       164 L~~N~l~g~~p~----~~~~l~~L~~L~ls~  190 (194)
                      +-+|.++ ....    .+.++|+|+.||+..
T Consensus       120 ll~Npv~-~k~~YR~yvl~klp~l~~LDF~k  149 (233)
T KOG1644|consen  120 LLGNPVE-HKKNYRLYVLYKLPSLRTLDFQK  149 (233)
T ss_pred             ecCCchh-cccCceeEEEEecCcceEeehhh
Confidence            9999887 2232    367889999999764

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.97  E-value=1.6e-07  Score=81.30  Aligned_cols=97  Identities=23%  Similarity=0.315  Sum_probs=76.0

Q ss_pred             eeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchh-hccCcccceeeccc
Q 046655           88 LWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLE-MGRLRNLVHLDLSD  166 (194)
Q Consensus        88 l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~-~~~l~~L~~L~L~~  166 (194)
                      .+++.|.+. .+. ..+.-++.+++|+|++| .++..  ..+..++.|+.|||++|++. .+|.- ..++. |+.|.+.+
T Consensus       169 a~fsyN~L~-~mD-~SLqll~ale~LnLshN-k~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~lrn  241 (1096)
T KOG1859|consen  169 ASFSYNRLV-LMD-ESLQLLPALESLNLSHN-KFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLLNLRN  241 (1096)
T ss_pred             hhcchhhHH-hHH-HHHHHHHHhhhhccchh-hhhhh--HHHHhcccccccccccchhc-cccccchhhhh-heeeeecc
Confidence            455667776 666 67777899999999999 87743  37888999999999999998 66643 23444 99999999


Q ss_pred             CccCCCCccccCCCCCCCeEeccCCcC
Q 046655          167 NYLSGYIPPTLGRLSKLEILNLSSNDL  193 (194)
Q Consensus       167 N~l~g~~p~~~~~l~~L~~L~ls~N~l  193 (194)
                      |.++ .+ ..+.++.+|+.||+++|-|
T Consensus       242 N~l~-tL-~gie~LksL~~LDlsyNll  266 (1096)
T KOG1859|consen  242 NALT-TL-RGIENLKSLYGLDLSYNLL  266 (1096)
T ss_pred             cHHH-hh-hhHHhhhhhhccchhHhhh
Confidence            9988 33 3477899999999999965

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=97.96  E-value=2.1e-06  Score=71.82  Aligned_cols=105  Identities=25%  Similarity=0.332  Sum_probs=81.1

Q ss_pred             eeeeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchhhccCcccce
Q 046655           82 VIGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVH  161 (194)
Q Consensus        82 ~~~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~  161 (194)
                      +..+..+.+..|.+. .+- ..+..+..++.+++..| .+.. +...+..+++|+.|++++|+|+..  ..+..++.|+.
T Consensus        71 l~~l~~l~l~~n~i~-~~~-~~l~~~~~l~~l~l~~n-~i~~-i~~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~  144 (414)
T KOG0531|consen   71 LTSLKELNLRQNLIA-KIL-NHLSKLKSLEALDLYDN-KIEK-IENLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKE  144 (414)
T ss_pred             hHhHHhhccchhhhh-hhh-cccccccceeeeecccc-chhh-cccchhhhhcchheeccccccccc--cchhhccchhh
Confidence            344444556777776 433 35778899999999999 8774 444377899999999999999955  34667778999


Q ss_pred             eecccCccCCCCccccCCCCCCCeEeccCCcCC
Q 046655          162 LDLSDNYLSGYIPPTLGRLSKLEILNLSSNDLY  194 (194)
Q Consensus       162 L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~ls  194 (194)
                      |++++|.++ .+ ..+..+++|+.+++++|.++
T Consensus       145 L~l~~N~i~-~~-~~~~~l~~L~~l~l~~n~i~  175 (414)
T KOG0531|consen  145 LNLSGNLIS-DI-SGLESLKSLKLLDLSYNRIV  175 (414)
T ss_pred             heeccCcch-hc-cCCccchhhhcccCCcchhh
Confidence            999999999 33 34667899999999999763

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=97.86  E-value=8.7e-06  Score=73.71  Aligned_cols=101  Identities=29%  Similarity=0.364  Sum_probs=79.7

Q ss_pred             eeccCCccccccCccccCCCCCccEEEecCCCC-CcccCCccccCCCCCCEeecCCCcccccCchhhccCcccceeeccc
Q 046655           88 LWYENDNITGELGRFKFSCFPNLKSFKIHSNYL-LSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLSD  166 (194)
Q Consensus        88 l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~-l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~  166 (194)
                      ..+-+|++. .++ ... ..+.|++|-+.+|.. +.....+.|..++.|+.|||++|.--+.+|..++.+-+|++|++++
T Consensus       528 ~s~~~~~~~-~~~-~~~-~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~  604 (889)
T KOG4658|consen  528 MSLMNNKIE-HIA-GSS-ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSD  604 (889)
T ss_pred             EEEeccchh-hcc-CCC-CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccC
Confidence            334455555 444 232 334799999999831 3333344578899999999999887779999999999999999999


Q ss_pred             CccCCCCccccCCCCCCCeEeccCCc
Q 046655          167 NYLSGYIPPTLGRLSKLEILNLSSND  192 (194)
Q Consensus       167 N~l~g~~p~~~~~l~~L~~L~ls~N~  192 (194)
                      ..++ .+|..++++.+|.+|++..+.
T Consensus       605 t~I~-~LP~~l~~Lk~L~~Lnl~~~~  629 (889)
T KOG4658|consen  605 TGIS-HLPSGLGNLKKLIYLNLEVTG  629 (889)
T ss_pred             CCcc-ccchHHHHHHhhheecccccc
Confidence            9999 899999999999999998764

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.78  E-value=4.9e-05  Score=56.73  Aligned_cols=84  Identities=26%  Similarity=0.267  Sum_probs=66.0

Q ss_pred             CCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchhhccCcccceeecccCccCCCCcc--ccCCCCCCC
Q 046655          107 FPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLSDNYLSGYIPP--TLGRLSKLE  184 (194)
Q Consensus       107 l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~g~~p~--~~~~l~~L~  184 (194)
                      +.+...+||+.| .+.  .-..|..++.|.+|.+++|+|+...|.--..++.|..|.|.+|++. .+-+  -+..+|+|+
T Consensus        41 ~d~~d~iDLtdN-dl~--~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~-~l~dl~pLa~~p~L~  116 (233)
T KOG1644|consen   41 LDQFDAIDLTDN-DLR--KLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQ-ELGDLDPLASCPKLE  116 (233)
T ss_pred             ccccceeccccc-chh--hcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchh-hhhhcchhccCCccc
Confidence            346778999999 554  2356788999999999999999666655556688999999999998 3322  256789999


Q ss_pred             eEeccCCcCC
Q 046655          185 ILNLSSNDLY  194 (194)
Q Consensus       185 ~L~ls~N~ls  194 (194)
                      +|.+-+|+++
T Consensus       117 ~Ltll~Npv~  126 (233)
T KOG1644|consen  117 YLTLLGNPVE  126 (233)
T ss_pred             eeeecCCchh
Confidence            9999998753

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=97.57  E-value=1.4e-05  Score=65.71  Aligned_cols=61  Identities=31%  Similarity=0.471  Sum_probs=32.7

Q ss_pred             CCCCCEeecCCCcccccCc--hhhccCcccceeecccCccCCC-Cccc-----cCCCCCCCeEeccCCcC
Q 046655          132 VSMLQTLELPSSSLTGIIP--LEMGRLRNLVHLDLSDNYLSGY-IPPT-----LGRLSKLEILNLSSNDL  193 (194)
Q Consensus       132 l~~L~~L~L~~n~l~~~~p--~~~~~l~~L~~L~L~~N~l~g~-~p~~-----~~~l~~L~~L~ls~N~l  193 (194)
                      ++.|+.|+|++|.+- ..+  ...+.++.|+.|+++.+.+... .|+.     ...+++|++|++..|++
T Consensus       245 ~~~L~~LdLs~N~li-~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I  313 (505)
T KOG3207|consen  245 LQTLQELDLSNNNLI-DFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNI  313 (505)
T ss_pred             hhHHhhccccCCccc-ccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCcc
Confidence            445555666555554 222  2344555666666666555521 1221     23566777777777765

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=97.50  E-value=2.3e-05  Score=64.48  Aligned_cols=112  Identities=20%  Similarity=0.251  Sum_probs=72.2

Q ss_pred             CeeeeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCccccc-Cchh-----hc
Q 046655           81 SVIGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGI-IPLE-----MG  154 (194)
Q Consensus        81 ~~~~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~-~p~~-----~~  154 (194)
                      ..+++..+++++|+..+.-. .....++.|+.|||++|..+....-...+.++.|+.|+++.+.+... .|+.     -.
T Consensus       220 ~fPsl~~L~L~~N~~~~~~~-~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~  298 (505)
T KOG3207|consen  220 TFPSLEVLYLEANEIILIKA-TSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTH  298 (505)
T ss_pred             hCCcHHHhhhhcccccceec-chhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhc
Confidence            34455557778774321212 23445678899999999333322224567788899999998888643 2322     24


Q ss_pred             cCcccceeecccCccCCCCcc--ccCCCCCCCeEeccCCcCC
Q 046655          155 RLRNLVHLDLSDNYLSGYIPP--TLGRLSKLEILNLSSNDLY  194 (194)
Q Consensus       155 ~l~~L~~L~L~~N~l~g~~p~--~~~~l~~L~~L~ls~N~ls  194 (194)
                      ..++|++|++..|++. ..+.  .+..+++|++|.+..|.++
T Consensus       299 ~f~kL~~L~i~~N~I~-~w~sl~~l~~l~nlk~l~~~~n~ln  339 (505)
T KOG3207|consen  299 TFPKLEYLNISENNIR-DWRSLNHLRTLENLKHLRITLNYLN  339 (505)
T ss_pred             ccccceeeecccCccc-cccccchhhccchhhhhhccccccc
Confidence            5688999999999986 3332  3556778888887777653

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.45  E-value=8.9e-05  Score=57.22  Aligned_cols=83  Identities=24%  Similarity=0.372  Sum_probs=49.6

Q ss_pred             ccCCCCCccEEEecCCC-CCcccCCccccCCCCCCEeecCCCcccccCchh---hccCcccceeecccCccCCCCc----
Q 046655          103 KFSCFPNLKSFKIHSNY-LLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLE---MGRLRNLVHLDLSDNYLSGYIP----  174 (194)
Q Consensus       103 ~~~~l~~L~~L~l~~n~-~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~---~~~l~~L~~L~L~~N~l~g~~p----  174 (194)
                      .+..+++|+.|.++.|+ .+++.++.-...+++|++++++.|++..  ++.   ...+.+|..|++.++..++ .-    
T Consensus        60 ~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl~pl~~l~nL~~Ldl~n~~~~~-l~dyre  136 (260)
T KOG2739|consen   60 NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTLRPLKELENLKSLDLFNCSVTN-LDDYRE  136 (260)
T ss_pred             cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--ccccchhhhhcchhhhhcccCCccc-cccHHH
Confidence            35567778888888772 1222333334456788888888888762  222   4455667777777776653 11    


Q ss_pred             cccCCCCCCCeEec
Q 046655          175 PTLGRLSKLEILNL  188 (194)
Q Consensus       175 ~~~~~l~~L~~L~l  188 (194)
                      ..|.-+++|++||-
T Consensus       137 ~vf~ll~~L~~LD~  150 (260)
T KOG2739|consen  137 KVFLLLPSLKYLDG  150 (260)
T ss_pred             HHHHHhhhhccccc
Confidence            12445667766653

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.05  E-value=0.00023  Score=63.17  Aligned_cols=83  Identities=27%  Similarity=0.345  Sum_probs=36.1

Q ss_pred             CCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccc-cCchhhccCcccceeecccCccCCCCc-------cccC
Q 046655          107 FPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTG-IIPLEMGRLRNLVHLDLSDNYLSGYIP-------PTLG  178 (194)
Q Consensus       107 l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~-~~p~~~~~l~~L~~L~L~~N~l~g~~p-------~~~~  178 (194)
                      +++|..||+|+. +++. + ..++.+++|+.|.+.+=.+.. ..-..+..+++|+.||+|..+... .+       +.-.
T Consensus       172 FpNL~sLDIS~T-nI~n-l-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~-~~~ii~qYlec~~  247 (699)
T KOG3665|consen  172 FPNLRSLDISGT-NISN-L-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNND-DTKIIEQYLECGM  247 (699)
T ss_pred             cCccceeecCCC-CccC-c-HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeecccccccc-chHHHHHHHHhcc
Confidence            344444444444 3331 1 333444444444433333321 111234456666666666554431 11       1112


Q ss_pred             CCCCCCeEeccCCcC
Q 046655          179 RLSKLEILNLSSNDL  193 (194)
Q Consensus       179 ~l~~L~~L~ls~N~l  193 (194)
                      .+|+|+.||.|++.+
T Consensus       248 ~LpeLrfLDcSgTdi  262 (699)
T KOG3665|consen  248 VLPELRFLDCSGTDI  262 (699)
T ss_pred             cCccccEEecCCcch
Confidence            356666666665543

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.92  E-value=0.00044  Score=53.46  Aligned_cols=86  Identities=23%  Similarity=0.273  Sum_probs=63.1

Q ss_pred             ccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCC--cccccCchhhccCcccceeecccCccCCCCccc---c
Q 046655          103 KFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSS--SLTGIIPLEMGRLRNLVHLDLSDNYLSGYIPPT---L  177 (194)
Q Consensus       103 ~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n--~l~~~~p~~~~~l~~L~~L~L~~N~l~g~~p~~---~  177 (194)
                      ....+..|+.+++.+. .++.  -..+..|++|++|.++.|  ++++.++.....+++|+++++++|+++ . ++.   +
T Consensus        38 l~d~~~~le~ls~~n~-gltt--~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~-~-lstl~pl  112 (260)
T KOG2739|consen   38 LTDEFVELELLSVINV-GLTT--LTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK-D-LSTLRPL  112 (260)
T ss_pred             ccccccchhhhhhhcc-ceee--cccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc-c-ccccchh
Confidence            3444566777777666 5542  245778899999999999  777666666667799999999999998 2 433   3


Q ss_pred             CCCCCCCeEeccCCcC
Q 046655          178 GRLSKLEILNLSSNDL  193 (194)
Q Consensus       178 ~~l~~L~~L~ls~N~l  193 (194)
                      ..+.+|..|++.+|..
T Consensus       113 ~~l~nL~~Ldl~n~~~  128 (260)
T KOG2739|consen  113 KELENLKSLDLFNCSV  128 (260)
T ss_pred             hhhcchhhhhcccCCc
Confidence            4567788889888753

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=96.89  E-value=2.4e-05  Score=59.72  Aligned_cols=92  Identities=15%  Similarity=0.241  Sum_probs=62.1

Q ss_pred             ccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchhhccCcccceeecccCccCCCCcccc
Q 046655           98 ELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLSDNYLSGYIPPTL  177 (194)
Q Consensus        98 ~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~  177 (194)
                      ++|-.++......+.||++.| .+. .+-..|..++.+..++++.|.+. -.|..++....++.+++..|..+ ..|.++
T Consensus        32 ~~~v~ei~~~kr~tvld~~s~-r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~  107 (326)
T KOG0473|consen   32 EIPVREIASFKRVTVLDLSSN-RLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQ  107 (326)
T ss_pred             ccchhhhhccceeeeehhhhh-HHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccc
Confidence            444344555666777777777 544 24555666677777777777776 56777777777777777777777 667777


Q ss_pred             CCCCCCCeEeccCCcC
Q 046655          178 GRLSKLEILNLSSNDL  193 (194)
Q Consensus       178 ~~l~~L~~L~ls~N~l  193 (194)
                      +..+.++++++-.|+|
T Consensus       108 ~k~~~~k~~e~k~~~~  123 (326)
T KOG0473|consen  108 KKEPHPKKNEQKKTEF  123 (326)
T ss_pred             cccCCcchhhhccCcc
Confidence            7777777777766654

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.75  E-value=0.00011  Score=57.57  Aligned_cols=80  Identities=21%  Similarity=0.236  Sum_probs=55.6

Q ss_pred             CCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCc-hhhccCcccceeecccCccCCCCccc-----cC
Q 046655          105 SCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIP-LEMGRLRNLVHLDLSDNYLSGYIPPT-----LG  178 (194)
Q Consensus       105 ~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~L~~N~l~g~~p~~-----~~  178 (194)
                      ..++.|++|.|+-| .++..  ..+..++.|++|+|..|.|....- .-+.++++|+.|.|..|.-.|.-+..     +.
T Consensus        38 ~kMp~lEVLsLSvN-kIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR  114 (388)
T KOG2123|consen   38 EKMPLLEVLSLSVN-KISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLR  114 (388)
T ss_pred             HhcccceeEEeecc-ccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHH
Confidence            45778888888888 66632  346778888888888888873211 23567888888888888777655443     44


Q ss_pred             CCCCCCeEe
Q 046655          179 RLSKLEILN  187 (194)
Q Consensus       179 ~l~~L~~L~  187 (194)
                      -+|+|+.||
T Consensus       115 ~LPnLkKLD  123 (388)
T KOG2123|consen  115 VLPNLKKLD  123 (388)
T ss_pred             Hcccchhcc
Confidence            567777665

>PRK15386 type III secretion protein GogB; Provisional

Probab=96.74  E-value=0.0038  Score=52.00  Aligned_cols=59  Identities=19%  Similarity=0.274  Sum_probs=32.6

Q ss_pred             eeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCC-cccccCch
Q 046655           84 GVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSS-SLTGIIPL  151 (194)
Q Consensus        84 ~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n-~l~~~~p~  151 (194)
                      .+..|++++|.++ .+| .   -.++|++|.++++..++ .+|..+.  .+|++|++++| .+. .+|.
T Consensus        53 ~l~~L~Is~c~L~-sLP-~---LP~sLtsL~Lsnc~nLt-sLP~~LP--~nLe~L~Ls~Cs~L~-sLP~  112 (426)
T PRK15386         53 ASGRLYIKDCDIE-SLP-V---LPNELTEITIENCNNLT-TLPGSIP--EGLEKLTVCHCPEIS-GLPE  112 (426)
T ss_pred             CCCEEEeCCCCCc-ccC-C---CCCCCcEEEccCCCCcc-cCCchhh--hhhhheEccCccccc-cccc
Confidence            3445666777666 665 1   12357777777653443 4454432  46777777766 343 4443

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.64  E-value=0.00076  Score=31.94  Aligned_cols=19  Identities=47%  Similarity=0.646  Sum_probs=9.6

Q ss_pred             cceeecccCccCCCCccccC
Q 046655          159 LVHLDLSDNYLSGYIPPTLG  178 (194)
Q Consensus       159 L~~L~L~~N~l~g~~p~~~~  178 (194)
                      |++||+++|+++ .+|+.|+
T Consensus         2 L~~Ldls~n~l~-~ip~~~~   20 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPSSFS   20 (22)
T ss_dssp             ESEEEETSSEES-EEGTTTT
T ss_pred             ccEEECCCCcCE-eCChhhc
Confidence            455555555555 4554443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=96.59  E-value=0.0018  Score=57.61  Aligned_cols=108  Identities=18%  Similarity=0.246  Sum_probs=66.3

Q ss_pred             eeeeeeeeccCCcccc-ccCccccCCCCCccEEEecCCCCCccc-CCccccCCCCCCEeecCCCcccccCchhhccCccc
Q 046655           82 VIGVSLLWYENDNITG-ELGRFKFSCFPNLKSFKIHSNYLLSGS-IPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNL  159 (194)
Q Consensus        82 ~~~l~~l~l~~n~l~~-~lp~~~~~~l~~L~~L~l~~n~~l~~~-~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L  159 (194)
                      -.+|+.|+++|.+... ..+...-..+|+|++|.+.+- .+... .-.-..++++|..||+++.+++..  ..++.+++|
T Consensus       121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~-~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknL  197 (699)
T KOG3665|consen  121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGR-QFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNL  197 (699)
T ss_pred             HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCc-eecchhHHHHhhccCccceeecCCCCccCc--HHHhccccH
Confidence            3455556667654431 112111234788888888876 44321 122344678888888888888743  667788888


Q ss_pred             ceeecccCccCC-CCccccCCCCCCCeEeccCCc
Q 046655          160 VHLDLSDNYLSG-YIPPTLGRLSKLEILNLSSND  192 (194)
Q Consensus       160 ~~L~L~~N~l~g-~~p~~~~~l~~L~~L~ls~N~  192 (194)
                      +.|.+.+=.+.. ..-..+..+++|++||+|...
T Consensus       198 q~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~  231 (699)
T KOG3665|consen  198 QVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDK  231 (699)
T ss_pred             HHHhccCCCCCchhhHHHHhcccCCCeeeccccc
Confidence            888776655551 111246678888888888653

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.47  E-value=0.0011  Score=31.36  Aligned_cols=21  Identities=33%  Similarity=0.502  Sum_probs=12.5

Q ss_pred             CCCEeecCCCcccccCchhhcc
Q 046655          134 MLQTLELPSSSLTGIIPLEMGR  155 (194)
Q Consensus       134 ~L~~L~L~~n~l~~~~p~~~~~  155 (194)
                      +|++|++++|+++ .+|++|++
T Consensus         1 ~L~~Ldls~n~l~-~ip~~~~~   21 (22)
T PF00560_consen    1 NLEYLDLSGNNLT-SIPSSFSN   21 (22)
T ss_dssp             TESEEEETSSEES-EEGTTTTT
T ss_pred             CccEEECCCCcCE-eCChhhcC
Confidence            3566666666666 56655543

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.37  E-value=0.00058  Score=54.15  Aligned_cols=61  Identities=33%  Similarity=0.284  Sum_probs=24.4

Q ss_pred             CCCCCCEeecCCCcccccCchhhccCcccceeecccCccCCC-CccccCCCCCCCeEeccCC
Q 046655          131 AVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLSDNYLSGY-IPPTLGRLSKLEILNLSSN  191 (194)
Q Consensus       131 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~g~-~p~~~~~l~~L~~L~ls~N  191 (194)
                      +|+.|+.|+|+.|.+...|-..-....+|+.+-|.+..+... ....+..+|.++.|+++.|
T Consensus        95 ~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N  156 (418)
T KOG2982|consen   95 QLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDN  156 (418)
T ss_pred             cCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccc
Confidence            444555555555554422211101233444444444444321 1122334444444444444

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=96.21  E-value=0.0013  Score=52.96  Aligned_cols=63  Identities=22%  Similarity=0.260  Sum_probs=29.6

Q ss_pred             CCCCCCEeecCCCccccc----CchhhccCcccceeecccCccCC----CCccccCCCCCCCeEeccCCcC
Q 046655          131 AVSMLQTLELPSSSLTGI----IPLEMGRLRNLVHLDLSDNYLSG----YIPPTLGRLSKLEILNLSSNDL  193 (194)
Q Consensus       131 ~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~L~~N~l~g----~~p~~~~~l~~L~~L~ls~N~l  193 (194)
                      ..+.|+.+.+..|.+.-.    +-..+..+++|+.||+..|-|+-    .+...+..+++|+.++++++.+
T Consensus       183 ~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll  253 (382)
T KOG1909|consen  183 SHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLL  253 (382)
T ss_pred             hccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccccccc
Confidence            344455555555544311    11234455666666666665551    1122234445556666555543

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=96.09  E-value=0.001  Score=53.59  Aligned_cols=89  Identities=20%  Similarity=0.313  Sum_probs=36.7

Q ss_pred             cCCCCCccEEEecCCCCCccc----CCccccCCCCCCEeecCCCcccccCchh----h-ccCcccceeecccCccCCC--
Q 046655          104 FSCFPNLKSFKIHSNYLLSGS----IPSEIAAVSMLQTLELPSSSLTGIIPLE----M-GRLRNLVHLDLSDNYLSGY--  172 (194)
Q Consensus       104 ~~~l~~L~~L~l~~n~~l~~~----~p~~~~~l~~L~~L~L~~n~l~~~~p~~----~-~~l~~L~~L~L~~N~l~g~--  172 (194)
                      +..+++|++||+..| .++..    +...++.+++|+.|+++++.+...=...    + ...++|+.+.+.+|.++..  
T Consensus       209 l~~~~~LevLdl~DN-tft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~  287 (382)
T KOG1909|consen  209 LEHCPHLEVLDLRDN-TFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAA  287 (382)
T ss_pred             HHhCCcceeeecccc-hhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHH
Confidence            334445555555555 33311    1222333444555555555444221111    1 1234555555555555411  


Q ss_pred             --CccccCCCCCCCeEeccCCcC
Q 046655          173 --IPPTLGRLSKLEILNLSSNDL  193 (194)
Q Consensus       173 --~p~~~~~l~~L~~L~ls~N~l  193 (194)
                        +-......+.|..|+|++|.+
T Consensus       288 ~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  288 LALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             HHHHHHHhcchhhHHhcCCcccc
Confidence              111123345555555555543

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.82  E-value=0.003  Score=50.26  Aligned_cols=81  Identities=26%  Similarity=0.323  Sum_probs=38.6

Q ss_pred             eeeeeccCCcccc--ccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCccccc-CchhhccCcccce
Q 046655           85 VSLLWYENDNITG--ELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGI-IPLEMGRLRNLVH  161 (194)
Q Consensus        85 l~~l~l~~n~l~~--~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~-~p~~~~~l~~L~~  161 (194)
                      +..+++.+|.|+.  ++. ..+.++|+|++|+++.| .+...|...-..+.+|+.|-|.+..+... .-..+..+|.++.
T Consensus        73 v~elDL~~N~iSdWseI~-~ile~lP~l~~LNls~N-~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vte  150 (418)
T KOG2982|consen   73 VKELDLTGNLISDWSEIG-AILEQLPALTTLNLSCN-SLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTE  150 (418)
T ss_pred             hhhhhcccchhccHHHHH-HHHhcCccceEeeccCC-cCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhh
Confidence            3335556666652  122 22345666666666666 55433322112345566666666555432 1122344445555


Q ss_pred             eecccC
Q 046655          162 LDLSDN  167 (194)
Q Consensus       162 L~L~~N  167 (194)
                      +.++.|
T Consensus       151 lHmS~N  156 (418)
T KOG2982|consen  151 LHMSDN  156 (418)
T ss_pred             hhhccc
Confidence            545444

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=95.24  E-value=0.056  Score=37.05  Aligned_cols=99  Identities=21%  Similarity=0.355  Sum_probs=53.2

Q ss_pred             eeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchhhccCcccceeec
Q 046655           85 VSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDL  164 (194)
Q Consensus        85 l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L  164 (194)
                      +..+.+.. .+. .++...|...+.++.+++..+  +...-...|..+.+++.+.+.. .+...-...|..++.|+.+++
T Consensus        14 l~~i~~~~-~~~-~I~~~~F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~   88 (129)
T PF13306_consen   14 LESITFPN-TIK-KIGENAFSNCTSLKSINFPNN--LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDI   88 (129)
T ss_dssp             --EEEETS-T---EE-TTTTTT-TT-SEEEESST--TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEE
T ss_pred             CCEEEECC-Cee-EeChhhccccccccccccccc--ccccceeeeecccccccccccc-ccccccccccccccccccccc
Confidence            33444443 455 666667888888999998776  3434455677887899999876 443233345777889999998


Q ss_pred             ccCccCCCCccccCCCCCCCeEeccC
Q 046655          165 SDNYLSGYIPPTLGRLSKLEILNLSS  190 (194)
Q Consensus       165 ~~N~l~g~~p~~~~~l~~L~~L~ls~  190 (194)
                      ..+ +...-...|.+. +++.+.+..
T Consensus        89 ~~~-~~~i~~~~f~~~-~l~~i~~~~  112 (129)
T PF13306_consen   89 PSN-ITEIGSSSFSNC-NLKEINIPS  112 (129)
T ss_dssp             TTT--BEEHTTTTTT--T--EEE-TT
T ss_pred             Ccc-ccEEchhhhcCC-CceEEEECC
Confidence            765 442223346665 788877764

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=95.14  E-value=0.0014  Score=52.02  Aligned_cols=56  Identities=14%  Similarity=0.081  Sum_probs=22.5

Q ss_pred             eccCCccccccCccccCCCCCccEEEecCCCCCccc-CCccccCCCCCCEeecCCCcc
Q 046655           89 WYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGS-IPSEIAAVSMLQTLELPSSSL  145 (194)
Q Consensus        89 ~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~-~p~~~~~l~~L~~L~L~~n~l  145 (194)
                      .++|+++...+- ..+..-..|+.++++++..++.. ..--+..++.|..|+|+++.+
T Consensus       216 SlEg~~LdD~I~-~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l  272 (419)
T KOG2120|consen  216 SLEGLRLDDPIV-NTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFL  272 (419)
T ss_pred             cccccccCcHHH-HHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhc
Confidence            334444443333 23334445555555554322211 011123344455555555443

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.11  E-value=0.0014  Score=51.63  Aligned_cols=81  Identities=22%  Similarity=0.273  Sum_probs=62.7

Q ss_pred             CCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchhhccCcccceeecccCccCCCCcc--ccCCCCCCC
Q 046655          107 FPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLSDNYLSGYIPP--TLGRLSKLE  184 (194)
Q Consensus       107 l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~g~~p~--~~~~l~~L~  184 (194)
                      +...+.|++=++ .+..  -....+|+.|+.|.|+-|+|+..  ..+..|++|+.|.|..|.|. .+-+  .+.++|+|+
T Consensus        18 l~~vkKLNcwg~-~L~D--Isic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~-sldEL~YLknlpsLr   91 (388)
T KOG2123|consen   18 LENVKKLNCWGC-GLDD--ISICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIE-SLDELEYLKNLPSLR   91 (388)
T ss_pred             HHHhhhhcccCC-CccH--HHHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccc-cHHHHHHHhcCchhh
Confidence            455667777676 5552  23346799999999999999955  44889999999999999998 4443  367899999


Q ss_pred             eEeccCCcC
Q 046655          185 ILNLSSNDL  193 (194)
Q Consensus       185 ~L~ls~N~l  193 (194)
                      .|.|..|+-
T Consensus        92 ~LWL~ENPC  100 (388)
T KOG2123|consen   92 TLWLDENPC  100 (388)
T ss_pred             hHhhccCCc
Confidence            999988863

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=94.94  E-value=0.086  Score=36.10  Aligned_cols=99  Identities=18%  Similarity=0.303  Sum_probs=47.3

Q ss_pred             CCCCeeeeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchhhccCc
Q 046655           78 SAGSVIGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLR  157 (194)
Q Consensus        78 ~~~~~~~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~  157 (194)
                      .+.....+..+.+.++ +. .++...|...+.++.+.+..+ . ...-...|..+++++.+++..+ +...-...|.+. 
T Consensus        30 ~F~~~~~l~~i~~~~~-~~-~i~~~~F~~~~~l~~i~~~~~-~-~~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-  103 (129)
T PF13306_consen   30 AFSNCTSLKSINFPNN-LT-SIGDNAFSNCKSLESITFPNN-L-KSIGDNAFSNCTNLKNIDIPSN-ITEIGSSSFSNC-  103 (129)
T ss_dssp             TTTT-TT-SEEEESST-TS-CE-TTTTTT-TT-EEEEETST-T--EE-TTTTTT-TTECEEEETTT--BEEHTTTTTT--
T ss_pred             hccccccccccccccc-cc-ccceeeeeccccccccccccc-c-cccccccccccccccccccCcc-ccEEchhhhcCC-
Confidence            3444445555666553 55 666567777778888888654 2 2233455667888999888765 442333456666 


Q ss_pred             ccceeecccCccCCCCccccCCCCCC
Q 046655          158 NLVHLDLSDNYLSGYIPPTLGRLSKL  183 (194)
Q Consensus       158 ~L~~L~L~~N~l~g~~p~~~~~l~~L  183 (194)
                      .|+.+.+.. .++..-...|.++++|
T Consensus       104 ~l~~i~~~~-~~~~i~~~~F~~~~~l  128 (129)
T PF13306_consen  104 NLKEINIPS-NITKIEENAFKNCTKL  128 (129)
T ss_dssp             T--EEE-TT-B-SS----GGG-----
T ss_pred             CceEEEECC-CccEECCccccccccC
Confidence            888887765 4442333446666555

>PRK15386 type III secretion protein GogB; Provisional

Probab=94.88  E-value=0.077  Score=44.40  Aligned_cols=32  Identities=22%  Similarity=0.269  Sum_probs=18.2

Q ss_pred             cccceeecccCccCCCCccccCCCCCCCeEeccCC
Q 046655          157 RNLVHLDLSDNYLSGYIPPTLGRLSKLEILNLSSN  191 (194)
Q Consensus       157 ~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N  191 (194)
                      ++|++|+++++... .+|..+-  .+|+.|+++.|
T Consensus       156 sSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n  187 (426)
T PRK15386        156 PSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIE  187 (426)
T ss_pred             CcccEEEecCCCcc-cCccccc--ccCcEEEeccc
Confidence            36777777776655 3443322  36666666554

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=94.61  E-value=0.017  Score=25.36  Aligned_cols=12  Identities=58%  Similarity=0.731  Sum_probs=3.9

Q ss_pred             cceeecccCccC
Q 046655          159 LVHLDLSDNYLS  170 (194)
Q Consensus       159 L~~L~L~~N~l~  170 (194)
                      |+.|++++|+++
T Consensus         3 L~~L~l~~n~L~   14 (17)
T PF13504_consen    3 LRTLDLSNNRLT   14 (17)
T ss_dssp             -SEEEETSS--S
T ss_pred             cCEEECCCCCCC
Confidence            344444444433

...

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=93.95  E-value=0.031  Score=44.10  Aligned_cols=104  Identities=24%  Similarity=0.316  Sum_probs=59.4

Q ss_pred             eeeeccCCccccc----cCccccCCCCCccEEEecCCCCCcccCC-----------ccccCCCCCCEeecCCCcccccCc
Q 046655           86 SLLWYENDNITGE----LGRFKFSCFPNLKSFKIHSNYLLSGSIP-----------SEIAAVSMLQTLELPSSSLTGIIP  150 (194)
Q Consensus        86 ~~l~l~~n~l~~~----lp~~~~~~l~~L~~L~l~~n~~l~~~~p-----------~~~~~l~~L~~L~L~~n~l~~~~p  150 (194)
                      .-++++||.|..+    +- ..+.+-.+|+..+++.-  ++|..-           ..+.+|+.|++.+||.|.|....|
T Consensus        33 ~evdLSGNtigtEA~e~l~-~~ia~~~~L~vvnfsd~--ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~  109 (388)
T COG5238          33 VEVDLSGNTIGTEAMEELC-NVIANVRNLRVVNFSDA--FTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFP  109 (388)
T ss_pred             eEEeccCCcccHHHHHHHH-HHHhhhcceeEeehhhh--hhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccc
Confidence            3356677766522    12 23344556666666553  333321           224467788888888888876666


Q ss_pred             hh----hccCcccceeecccCccCCCCccc-cC-------------CCCCCCeEeccCCcC
Q 046655          151 LE----MGRLRNLVHLDLSDNYLSGYIPPT-LG-------------RLSKLEILNLSSNDL  193 (194)
Q Consensus       151 ~~----~~~l~~L~~L~L~~N~l~g~~p~~-~~-------------~l~~L~~L~ls~N~l  193 (194)
                      +.    +.+-..|.+|.+++|.+- ++... ++             .-|.|+.++...|++
T Consensus       110 e~L~d~is~~t~l~HL~l~NnGlG-p~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRl  169 (388)
T COG5238         110 EELGDLISSSTDLVHLKLNNNGLG-PIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRL  169 (388)
T ss_pred             hHHHHHHhcCCCceeEEeecCCCC-ccchhHHHHHHHHHHHHhhhccCCCceEEEeccchh
Confidence            54    344567888888887765 22211 11             345677777776654

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=93.44  E-value=0.14  Score=40.51  Aligned_cols=104  Identities=21%  Similarity=0.241  Sum_probs=55.4

Q ss_pred             eeeeeeccCCccccccCccc----cCCCCCccEEEecCCCCCcccCC-ccc-------------cCCCCCCEeecCCCcc
Q 046655           84 GVSLLWYENDNITGELGRFK----FSCFPNLKSFKIHSNYLLSGSIP-SEI-------------AAVSMLQTLELPSSSL  145 (194)
Q Consensus        84 ~l~~l~l~~n~l~~~lp~~~----~~~l~~L~~L~l~~n~~l~~~~p-~~~-------------~~l~~L~~L~L~~n~l  145 (194)
                      +++..+++.|.+....| +.    +..-..|++|.+++| .+- .+. ..+             ..-+.|+.+....|++
T Consensus        93 ~l~~v~LSDNAfg~~~~-e~L~d~is~~t~l~HL~l~Nn-GlG-p~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRl  169 (388)
T COG5238          93 RLQKVDLSDNAFGSEFP-EELGDLISSSTDLVHLKLNNN-GLG-PIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRL  169 (388)
T ss_pred             cceeeeccccccCcccc-hHHHHHHhcCCCceeEEeecC-CCC-ccchhHHHHHHHHHHHHhhhccCCCceEEEeccchh
Confidence            34445566666665554 22    233455667777666 432 221 111             1235566666666666


Q ss_pred             cccCchh-----hccCcccceeecccCccCCCCcc--------ccCCCCCCCeEeccCCcCC
Q 046655          146 TGIIPLE-----MGRLRNLVHLDLSDNYLSGYIPP--------TLGRLSKLEILNLSSNDLY  194 (194)
Q Consensus       146 ~~~~p~~-----~~~l~~L~~L~L~~N~l~g~~p~--------~~~~l~~L~~L~ls~N~ls  194 (194)
                      .. -|..     +..-..|+.+.+..|.|.   |.        .+..+.+|++||+..|-|+
T Consensus       170 en-gs~~~~a~~l~sh~~lk~vki~qNgIr---pegv~~L~~~gl~y~~~LevLDlqDNtft  227 (388)
T COG5238         170 EN-GSKELSAALLESHENLKEVKIQQNGIR---PEGVTMLAFLGLFYSHSLEVLDLQDNTFT  227 (388)
T ss_pred             cc-CcHHHHHHHHHhhcCceeEEeeecCcC---cchhHHHHHHHHHHhCcceeeeccccchh
Confidence            42 2211     222245666666666665   43        1345678888888888654

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=93.43  E-value=0.0016  Score=49.95  Aligned_cols=80  Identities=11%  Similarity=0.139  Sum_probs=66.1

Q ss_pred             eeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchhhccCcccceeecc
Q 046655           86 SLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLS  165 (194)
Q Consensus        86 ~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~  165 (194)
                      ..++++.|++. .+. ..|..++.+..||++-| .+. ..|..++.+..++.+++..|.++ ..|.+++..++++++++-
T Consensus        45 tvld~~s~r~v-n~~-~n~s~~t~~~rl~~skn-q~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~k  119 (326)
T KOG0473|consen   45 TVLDLSSNRLV-NLG-KNFSILTRLVRLDLSKN-QIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQK  119 (326)
T ss_pred             eeehhhhhHHH-hhc-cchHHHHHHHHHhccHh-hHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhhc
Confidence            34666777776 665 56777888999999988 665 57889999899999999999998 889999999999999999


Q ss_pred             cCccC
Q 046655          166 DNYLS  170 (194)
Q Consensus       166 ~N~l~  170 (194)
                      .|.|.
T Consensus       120 ~~~~~  124 (326)
T KOG0473|consen  120 KTEFF  124 (326)
T ss_pred             cCcch
Confidence            88876

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=93.04  E-value=0.11  Score=25.22  Aligned_cols=13  Identities=31%  Similarity=0.560  Sum_probs=6.4

Q ss_pred             CCCEeecCCCccc
Q 046655          134 MLQTLELPSSSLT  146 (194)
Q Consensus       134 ~L~~L~L~~n~l~  146 (194)
                      +|++|+|++|++.
T Consensus         3 ~L~~L~L~~N~l~   15 (26)
T smart00369        3 NLRELDLSNNQLS   15 (26)
T ss_pred             CCCEEECCCCcCC
Confidence            4445555555544

>smart00370 LRR Leucine-rich repeats, outliers

Probab=93.04  E-value=0.11  Score=25.22  Aligned_cols=13  Identities=31%  Similarity=0.560  Sum_probs=6.4

Q ss_pred             CCCEeecCCCccc
Q 046655          134 MLQTLELPSSSLT  146 (194)
Q Consensus       134 ~L~~L~L~~n~l~  146 (194)
                      +|++|+|++|++.
T Consensus         3 ~L~~L~L~~N~l~   15 (26)
T smart00370        3 NLRELDLSNNQLS   15 (26)
T ss_pred             CCCEEECCCCcCC
Confidence            4445555555544

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=90.43  E-value=0.08  Score=25.24  Aligned_cols=15  Identities=33%  Similarity=0.554  Sum_probs=7.2

Q ss_pred             CCCCEeecCCCcccc
Q 046655          133 SMLQTLELPSSSLTG  147 (194)
Q Consensus       133 ~~L~~L~L~~n~l~~  147 (194)
                      ++|++|+|++|++++
T Consensus         2 ~~L~~L~l~~n~i~~   16 (24)
T PF13516_consen    2 PNLETLDLSNNQITD   16 (24)
T ss_dssp             TT-SEEE-TSSBEHH
T ss_pred             CCCCEEEccCCcCCH
Confidence            455566666665553

...

>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily

Probab=88.89  E-value=0.37  Score=23.66  Aligned_cols=13  Identities=46%  Similarity=0.690  Sum_probs=7.0

Q ss_pred             CCCCeEeccCCcC
Q 046655          181 SKLEILNLSSNDL  193 (194)
Q Consensus       181 ~~L~~L~ls~N~l  193 (194)
                      .+|+.|+++.|+|
T Consensus         2 ~~L~~L~L~~NkI   14 (26)
T smart00365        2 TNLEELDLSQNKI   14 (26)
T ss_pred             CccCEEECCCCcc
Confidence            3455555555554

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=87.95  E-value=0.015  Score=46.40  Aligned_cols=82  Identities=24%  Similarity=0.290  Sum_probs=48.0

Q ss_pred             CccEEEecCCCCCcc-cCCccccCCCCCCEeecCCCcccccCchhhccCcccceeecccC-ccCC-CCccccCCCCCCCe
Q 046655          109 NLKSFKIHSNYLLSG-SIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLSDN-YLSG-YIPPTLGRLSKLEI  185 (194)
Q Consensus       109 ~L~~L~l~~n~~l~~-~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N-~l~g-~~p~~~~~l~~L~~  185 (194)
                      .++++||+.. .++- .+..-+..+..|+.|.|.++++.+.+-..+.+-..|+.++++.. .|+. .+.-.+..++.|+.
T Consensus       186 Rlq~lDLS~s-~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~  264 (419)
T KOG2120|consen  186 RLQHLDLSNS-VITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE  264 (419)
T ss_pred             hhHHhhcchh-heeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence            4677777766 4442 12233455667777777777777666666777777777777654 3441 11122455666666


Q ss_pred             EeccCC
Q 046655          186 LNLSSN  191 (194)
Q Consensus       186 L~ls~N  191 (194)
                      |+++-+
T Consensus       265 LNlsWc  270 (419)
T KOG2120|consen  265 LNLSWC  270 (419)
T ss_pred             cCchHh
Confidence            666543

>smart00364 LRR_BAC Leucine-rich repeats, bacterial type

Probab=85.46  E-value=0.52  Score=23.15  Aligned_cols=18  Identities=33%  Similarity=0.569  Sum_probs=13.2

Q ss_pred             cccceeecccCccCCCCcc
Q 046655          157 RNLVHLDLSDNYLSGYIPP  175 (194)
Q Consensus       157 ~~L~~L~L~~N~l~g~~p~  175 (194)
                      ++|+.|++++|+++ .+|+
T Consensus         2 ~~L~~L~vs~N~Lt-~LPe   19 (26)
T smart00364        2 PSLKELNVSNNQLT-SLPE   19 (26)
T ss_pred             cccceeecCCCccc-cCcc
Confidence            45777888888887 5665

>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type

Probab=84.66  E-value=0.81  Score=22.69  Aligned_cols=13  Identities=46%  Similarity=0.611  Sum_probs=7.9

Q ss_pred             CCCCeEeccCCcC
Q 046655          181 SKLEILNLSSNDL  193 (194)
Q Consensus       181 ~~L~~L~ls~N~l  193 (194)
                      ++|++|||++|.|
T Consensus         2 ~~L~~LdL~~N~i   14 (28)
T smart00368        2 PSLRELDLSNNKL   14 (28)
T ss_pred             CccCEEECCCCCC
Confidence            3566666666655

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	194
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		2e-08
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		2e-08
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		3e-05
1w8a_A	192	Third Lrr Domain Of Drosophila Slit Length = 192		4e-04

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 33/74 (44%), Positives = 46/74 (62%)
Query: 120 LLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLSDNYLSGYIPPTLGR 179
           +LSG IP EI ++  L  L L  + ++G IP E+G LR L  LDLS N L G IP  +  
Sbjct: 640 MLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSA 699
Query: 180 LSKLEILNLSSNDL 193
           L+ L  ++LS+N+L
Sbjct: 700 LTMLTEIDLSNNNL 713

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 33/74 (44%), Positives = 46/74 (62%)
Query: 120 LLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLSDNYLSGYIPPTLGR 179
           +LSG IP EI ++  L  L L  + ++G IP E+G LR L  LDLS N L G IP  +  
Sbjct: 643 MLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSA 702
Query: 180 LSKLEILNLSSNDL 193
           L+ L  ++LS+N+L
Sbjct: 703 LTMLTEIDLSNNNL 716

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 44.7 bits (104), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 38/63 (60%)
Query: 121 LSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLSDNYLSGYIPPTLGRL 180
           L G IP  IA ++ L  L +  ++++G IP  + +++ LV LD S N LSG +PP++  L
Sbjct: 89  LVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSL 148
Query: 181 SKL 183
             L
Sbjct: 149 PNL 151

>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit Length = 192

Iteration: 1
 Score = 40.8 bits (94), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 41/134 (30%), Positives = 59/134 (44%), Gaps = 14/134 (10%)
Query: 68  HCKWTGVSCNSAG-SVIGVSLLWYE-----NDNITGELGRFK----FSCFPNLKSFKIHS 117
           HC+ T V C   G   I   +  +      NDN   ELGR      F   P+L   ++  
Sbjct: 7   HCEGTTVDCTGRGLKEIPRDIPLHTTELLLNDN---ELGRISSDGLFGRLPHLVKLELKR 63
Query: 118 NYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLSDNYLSGYIPPTL 177
           N L +G  P+     S +Q L+L  + +  I       L  L  L+L DN +S  +P + 
Sbjct: 64  NQL-TGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSF 122
Query: 178 GRLSKLEILNLSSN 191
             L+ L  LNL+SN
Sbjct: 123 EHLNSLTSLNLASN 136

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	194
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-30
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-20
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-16
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-13
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-21
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-20
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-20
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-20
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	7e-20
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-19
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-19
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	9e-19
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-18
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-17
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	8e-17
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-16
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-14
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-11
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	9e-11
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-10
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-04
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-16
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	9e-16
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-13
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-13
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-13
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	8e-12
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-10
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-09
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-09
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-08
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-08
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-06
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-05
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-05
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-15
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-14
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-12
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-12
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-12
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-12
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	9e-12
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-11
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-11
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-08
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-15
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-14
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-14
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-08
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-14
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-14
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-13
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-13
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-13
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-12
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-11
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-11
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-11
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-11
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-11
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-11
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-10
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-10
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-10
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-04
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-13
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-12
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-11
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-11
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-09
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-09
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-09
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	8e-09
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	9e-09
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-08
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-08
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-07
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-06
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-13
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-12
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-12
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	7e-11
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	7e-11
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-10
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-10
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	7e-10
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-09
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-09
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	7e-08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-12
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	8e-12
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-11
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-11
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-10
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-10
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-09
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-09
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-08
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	9e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	7e-04
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-11
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	7e-11
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	8e-11
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-10
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	7e-10
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-08
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-10
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-10
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-09
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-08
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-08
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	9e-08
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-06
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-10
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-09
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-09
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-08
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	9e-08
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-07
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-07
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	6e-06
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	9e-05
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-10
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-10
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-09
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	7e-09
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-08
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-08
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	5e-08
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	7e-06
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-04
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-10
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-09
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-09
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-09
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	9e-09
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-06
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-09
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-08
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-07
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-07
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	8e-07
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	9e-07
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-06
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-04
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-09
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-07
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-06
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-04
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-09
1o6v_A	466	Internalin A; bacterial infection, extracellular r	6e-09
1o6v_A	466	Internalin A; bacterial infection, extracellular r	9e-09
1o6v_A	466	Internalin A; bacterial infection, extracellular r	9e-09
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-08
1o6v_A	466	Internalin A; bacterial infection, extracellular r	6e-08
1o6v_A	466	Internalin A; bacterial infection, extracellular r	6e-08
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-07
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-07
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-07
1o6v_A	466	Internalin A; bacterial infection, extracellular r	7e-05
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	6e-09
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	3e-07
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-06
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-08
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	9e-08
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-07
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	7e-07
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-06
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	5e-06
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-05
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-05
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-08
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	6e-08
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-07
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-07
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-07
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	5e-06
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	5e-06
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-05
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-05
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-08
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-07
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	7e-07
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	5e-06
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	6e-06
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-05
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-05
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	6e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-07
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	7e-06
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-05
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	6e-08
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-07
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-07
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-07
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	5e-07
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-06
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-05
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	7e-08
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-07
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-06
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	6e-06
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-07
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-06
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	8e-06
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-05
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-04
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-07
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	7e-06
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-05
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-04
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-07
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-06
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-05
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-05
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-05
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-07
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-07
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-06
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-06
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-06
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-04
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-07
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	8e-07
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	8e-07
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-06
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-06
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-06
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-06
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-05
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-07
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	5e-06
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	5e-06
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	8e-06
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	8e-06
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-05
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-06
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-06
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	6e-06
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-05
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	7e-05
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	8e-05
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-06
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-06
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-05
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-05
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-04
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-06
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-05
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	5e-05
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	5e-04
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	4e-06
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	5e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	8e-04
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	6e-06
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-05
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	9e-05
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-04
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	7e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-05
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	8e-06
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-05
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	6e-05
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	5e-04
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-05
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-05
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-05
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-04
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-05
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-05
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-05
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	6e-05
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-04
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-04
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-05
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	5e-05
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	5e-05
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	5e-04
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	8e-04
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	5e-05
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	6e-04
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	7e-05
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-04
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-04
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	6e-04
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	7e-05
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-04
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-04
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-04
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-04
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-04
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-04
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-04
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	4e-04
3m19_A	251	Variable lymphocyte receptor A diversity region; a	7e-04

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  112 bits (283), Expect = 1e-30
 Identities = 37/142 (26%), Positives = 59/142 (41%), Gaps = 12/142 (8%)

Query: 58  NWATGNYTSYHCKWTGVSCNSAGSVIGVSLLWYENDNITG------ELGRFKFSCFPNLK 111
           +W        +  W GV C++      V+ L     N+         L        P L 
Sbjct: 26  SWLPTTDCC-NRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANL-----PYLN 79

Query: 112 SFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLSDNYLSG 171
              I     L G IP  IA ++ L  L +  ++++G IP  + +++ LV LD S N LSG
Sbjct: 80  FLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSG 139

Query: 172 YIPPTLGRLSKLEILNLSSNDL 193
            +PP++  L  L  +    N +
Sbjct: 140 TLPPSISSLPNLVGITFDGNRI 161

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 85.3 bits (212), Expect = 3e-20
 Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 2/85 (2%)

Query: 109 NLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLSDNY 168
           NL    +  N +L G       +    Q + L  +SL   +  ++G  +NL  LDL +N 
Sbjct: 198 NLAFVDLSRN-MLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNR 255

Query: 169 LSGYIPPTLGRLSKLEILNLSSNDL 193
           + G +P  L +L  L  LN+S N+L
Sbjct: 256 IYGTLPQGLTQLKFLHSLNVSFNNL 280

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 73.7 bits (182), Expect = 3e-16
 Identities = 23/88 (26%), Positives = 40/88 (45%), Gaps = 2/88 (2%)

Query: 107 FPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLSD 166
           F  L +    S   L+G IP   A ++ L  ++L  + L G   +  G  +N   + L+ 
Sbjct: 172 FSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAK 230

Query: 167 NYLSGYIPPTLGRLSKLEILNLSSNDLY 194
           N L+  +   +G    L  L+L +N +Y
Sbjct: 231 NSLAFDLGK-VGLSKNLNGLDLRNNRIY 257

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 66.0 bits (162), Expect = 3e-13
 Identities = 20/84 (23%), Positives = 40/84 (47%), Gaps = 3/84 (3%)

Query: 109 NLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLSDNY 168
           N +   +  N  L+  +   +     L  L+L ++ + G +P  + +L+ L  L++S N 
Sbjct: 222 NTQKIHLAKN-SLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNN 279

Query: 169 LSGYIPPTLGRLSKLEILNLSSND 192
           L G I P  G L + ++   ++N 
Sbjct: 280 LCGEI-PQGGNLQRFDVSAYANNK 302

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 89.6 bits (223), Expect = 3e-21
 Identities = 33/101 (32%), Positives = 47/101 (46%), Gaps = 2/101 (1%)

Query: 94  NITGEL-GRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLE 152
           N +G +      +    L+   + +N   +G IP  ++  S L +L L  + L+G IP  
Sbjct: 379 NFSGPILPNLCQNPKNTLQELYLQNNGF-TGKIPPTLSNCSELVSLHLSFNYLSGTIPSS 437

Query: 153 MGRLRNLVHLDLSDNYLSGYIPPTLGRLSKLEILNLSSNDL 193
           +G L  L  L L  N L G IP  L  +  LE L L  NDL
Sbjct: 438 LGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDL 478

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 86.9 bits (216), Expect = 3e-20
 Identities = 24/102 (23%), Positives = 41/102 (40%)

Query: 92  NDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPL 151
            + I G+   +  +     +     +     G    ++  +S      + S    G    
Sbjct: 567 ANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSP 626

Query: 152 EMGRLRNLVHLDLSDNYLSGYIPPTLGRLSKLEILNLSSNDL 193
                 +++ LD+S N LSGYIP  +G +  L ILNL  ND+
Sbjct: 627 TFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDI 668

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 86.1 bits (214), Expect = 5e-20
 Identities = 35/159 (22%), Positives = 59/159 (37%), Gaps = 30/159 (18%)

Query: 63  NYTSYHCKWTGVSCNSAGSVIGVSL----LWYENDNITGELGRFK--------------- 103
           +     C + GV+C     V  + L    L      ++  L                   
Sbjct: 34  SSNKNPCTFDGVTCRD-DKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGS 92

Query: 104 ---FSCFPNLKSFKIHSNYLLSGSIPS--EIAAVSMLQTLELPSSSLTGIIPLEMG-RLR 157
              F C  +L S  +  N L SG + +   + + S L+ L + S++L     +  G +L 
Sbjct: 93  VSGFKCSASLTSLDLSRNSL-SGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLN 151

Query: 158 NLVHLDLSDNYLSGYIPPTL---GRLSKLEILNLSSNDL 193
           +L  LDLS N +SG             +L+ L +S N +
Sbjct: 152 SLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKI 190

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 86.1 bits (214), Expect = 5e-20
 Identities = 37/101 (36%), Positives = 52/101 (51%), Gaps = 2/101 (1%)

Query: 94  NITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEM 153
            ++G +          L+  K+  N +L G IP E+  V  L+TL L  + LTG IP  +
Sbjct: 429 YLSGTIPSS-LGSLSKLRDLKLWLN-MLEGEIPQELMYVKTLETLILDFNDLTGEIPSGL 486

Query: 154 GRLRNLVHLDLSDNYLSGYIPPTLGRLSKLEILNLSSNDLY 194
               NL  + LS+N L+G IP  +GRL  L IL LS+N   
Sbjct: 487 SNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFS 527

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 85.7 bits (213), Expect = 7e-20
 Identities = 33/86 (38%), Positives = 48/86 (55%), Gaps = 1/86 (1%)

Query: 108 PNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLSDN 167
             L++  +  N L +G IPS ++  + L  + L ++ LTG IP  +GRL NL  L LS+N
Sbjct: 466 KTLETLILDFNDL-TGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNN 524

Query: 168 YLSGYIPPTLGRLSKLEILNLSSNDL 193
             SG IP  LG    L  L+L++N  
Sbjct: 525 SFSGNIPAELGDCRSLIWLDLNTNLF 550

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 85.3 bits (212), Expect = 1e-19
 Identities = 34/102 (33%), Positives = 55/102 (53%), Gaps = 3/102 (2%)

Query: 94  NITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEM 153
             TGE+  F       L    +  N+   G++P    + S+L++L L S++ +G +P++ 
Sbjct: 280 KFTGEIPDFLSGACDTLTGLDLSGNHF-YGAVPPFFGSCSLLESLALSSNNFSGELPMDT 338

Query: 154 -GRLRNLVHLDLSDNYLSGYIPPTLGRLS-KLEILNLSSNDL 193
             ++R L  LDLS N  SG +P +L  LS  L  L+LSSN+ 
Sbjct: 339 LLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNF 380

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 83.4 bits (207), Expect = 4e-19
 Identities = 36/131 (27%), Positives = 59/131 (45%), Gaps = 2/131 (1%)

Query: 63  NYTSYHCKWTGVSCNSAGSVIGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLS 122
           +      ++ G+       +   +     +    G       +   ++    +  N L S
Sbjct: 588 HGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNN-GSMMFLDMSYNML-S 645

Query: 123 GSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLSDNYLSGYIPPTLGRLSK 182
           G IP EI ++  L  L L  + ++G IP E+G LR L  LDLS N L G IP  +  L+ 
Sbjct: 646 GYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTM 705

Query: 183 LEILNLSSNDL 193
           L  ++LS+N+L
Sbjct: 706 LTEIDLSNNNL 716

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 82.3 bits (204), Expect = 9e-19
 Identities = 27/102 (26%), Positives = 44/102 (43%), Gaps = 6/102 (5%)

Query: 94  NITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAA-VSMLQTLELPSSSLTGIIPLE 152
              G +         +L+   +  N   +G IP  ++     L  L+L  +   G +P  
Sbjct: 258 QFVGPIPPLPLK---SLQYLSLAENKF-TGEIPDFLSGACDTLTGLDLSGNHFYGAVPPF 313

Query: 153 MGRLRNLVHLDLSDNYLSGYIPP-TLGRLSKLEILNLSSNDL 193
            G    L  L LS N  SG +P  TL ++  L++L+LS N+ 
Sbjct: 314 FGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEF 355

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 80.7 bits (200), Expect = 3e-18
 Identities = 30/102 (29%), Positives = 50/102 (49%), Gaps = 6/102 (5%)

Query: 94  NITGEL--GRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPL 151
           +I+G    G         LK   I  N + SG +   ++    L+ L++ S++ +  IP 
Sbjct: 162 SISGANVVGWVLSDGCGELKHLAISGNKI-SGDVD--VSRCVNLEFLDVSSNNFSTGIP- 217

Query: 152 EMGRLRNLVHLDLSDNYLSGYIPPTLGRLSKLEILNLSSNDL 193
            +G    L HLD+S N LSG     +   ++L++LN+SSN  
Sbjct: 218 FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQF 259

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 78.8 bits (195), Expect = 1e-17
 Identities = 36/91 (39%), Positives = 41/91 (45%), Gaps = 4/91 (4%)

Query: 104 FSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEM-GRLRNLVHL 162
            S    LK   I SN    G IP        LQ L L  +  TG IP  + G    L  L
Sbjct: 243 ISTCTELKLLNISSNQF-VGPIPPLPL--KSLQYLSLAENKFTGEIPDFLSGACDTLTGL 299

Query: 163 DLSDNYLSGYIPPTLGRLSKLEILNLSSNDL 193
           DLS N+  G +PP  G  S LE L LSSN+ 
Sbjct: 300 DLSGNHFYGAVPPFFGSCSLLESLALSSNNF 330

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 76.9 bits (190), Expect = 8e-17
 Identities = 33/101 (32%), Positives = 53/101 (52%), Gaps = 2/101 (1%)

Query: 94  NITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEM 153
           ++TGE+     +C  NL    + +N L +G IP  I  +  L  L+L ++S +G IP E+
Sbjct: 477 DLTGEIPSGLSNC-TNLNWISLSNNRL-TGEIPKWIGRLENLAILKLSNNSFSGNIPAEL 534

Query: 154 GRLRNLVHLDLSDNYLSGYIPPTLGRLSKLEILNLSSNDLY 194
           G  R+L+ LDL+ N  +G IP  + + S     N  +   Y
Sbjct: 535 GDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRY 575

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 76.5 bits (189), Expect = 1e-16
 Identities = 28/94 (29%), Positives = 41/94 (43%), Gaps = 4/94 (4%)

Query: 100 GRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNL 159
           G    S   NL+   + SN   S  IP  +   S LQ L++  + L+G     +     L
Sbjct: 192 GDVDVSRCVNLEFLDVSSNNF-STGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTEL 249

Query: 160 VHLDLSDNYLSGYIPPTLGRLSKLEILNLSSNDL 193
             L++S N   G IPP    L  L+ L+L+ N  
Sbjct: 250 KLLNISSNQFVGPIPPL--PLKSLQYLSLAENKF 281

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 68.4 bits (168), Expect = 6e-14
 Identities = 28/90 (31%), Positives = 46/90 (51%), Gaps = 5/90 (5%)

Query: 108 PNLKSFKIHSNYLLSGSIPSE-IAAVSMLQTLELPSSSLTGIIPLEMGRLR-NLVHLDLS 165
             L+S  + SN   SG +P + +  +  L+ L+L  +  +G +P  +  L  +L+ LDLS
Sbjct: 318 SLLESLALSSN-NFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLS 376

Query: 166 DNYLSGYIPPTLGR--LSKLEILNLSSNDL 193
            N  SG I P L +   + L+ L L +N  
Sbjct: 377 SNNFSGPILPNLCQNPKNTLQELYLQNNGF 406

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 60.7 bits (148), Expect = 2e-11
 Identities = 15/89 (16%), Positives = 34/89 (38%), Gaps = 7/89 (7%)

Query: 107 FPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLSD 166
             +L    +++N   +G+IP+ +      Q+ ++ ++ + G   + +           + 
Sbjct: 537 CRSLIWLDLNTNLF-NGTIPAAMF----KQSGKIAANFIAGKRYVYIKNDGMKKECHGAG 591

Query: 167 NY--LSGYIPPTLGRLSKLEILNLSSNDL 193
           N     G     L RLS     N++S   
Sbjct: 592 NLLEFQGIRSEQLNRLSTRNPCNITSRVY 620

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 59.2 bits (144), Expect = 9e-11
 Identities = 23/102 (22%), Positives = 42/102 (41%), Gaps = 10/102 (9%)

Query: 92  NDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPL 151
              I   +GR       NL   K+ +N   SG+IP+E+     L  L+L ++   G IP 
Sbjct: 503 TGEIPKWIGRL-----ENLAILKLSNN-SFSGNIPAELGDCRSLIWLDLNTNLFNGTIPA 556

Query: 152 EMGRLRNLVHLDLSDNYLSGYIPPTLGRLSKLEILNLSSNDL 193
            M +        ++ N+++G     +      +  + + N L
Sbjct: 557 AMFKQS----GKIAANFIAGKRYVYIKNDGMKKECHGAGNLL 594

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 57.2 bits (139), Expect = 4e-10
 Identities = 26/56 (46%), Positives = 33/56 (58%)

Query: 121 LSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLSDNYLSGYIPPT 176
           +SGSIP E+  +  L  L+L S+ L G IP  M  L  L  +DLS+N LSG IP  
Sbjct: 668 ISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM 723

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 39.1 bits (92), Expect = 5e-04
 Identities = 11/41 (26%), Positives = 20/41 (48%), Gaps = 3/41 (7%)

Query: 157 RNLVHLDLSDNYLS---GYIPPTLGRLSKLEILNLSSNDLY 194
             +  +DLS   L+     +  +L  L+ LE L LS++ + 
Sbjct: 50  DKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHIN 90

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 75.5 bits (186), Expect = 2e-16
 Identities = 19/90 (21%), Positives = 35/90 (38%), Gaps = 1/90 (1%)

Query: 104 FSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLD 163
           F  FP L+   +    +          ++S L TL L  + +  +       L +L  L 
Sbjct: 48  FFSFPELQVLDLSRCEI-QTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 106

Query: 164 LSDNYLSGYIPPTLGRLSKLEILNLSSNDL 193
             +  L+      +G L  L+ LN++ N +
Sbjct: 107 AVETNLASLENFPIGHLKTLKELNVAHNLI 136

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 73.5 bits (181), Expect = 9e-16
 Identities = 20/90 (22%), Positives = 36/90 (40%)

Query: 104 FSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLD 163
           F+   +L+  K+  N      +P     +  L  L+L    L  + P     L +L  L+
Sbjct: 441 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 500

Query: 164 LSDNYLSGYIPPTLGRLSKLEILNLSSNDL 193
           +S N            L+ L++L+ S N +
Sbjct: 501 MSHNNFFSLDTFPYKCLNSLQVLDYSLNHI 530

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 67.0 bits (164), Expect = 2e-13
 Identities = 22/91 (24%), Positives = 42/91 (46%), Gaps = 2/91 (2%)

Query: 104 FSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLD 163
           +    +L +  +  N +         + +S LQ L    ++L  +    +G L+ L  L+
Sbjct: 72  YQSLSHLSTLILTGNPI-QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELN 130

Query: 164 LSDNYL-SGYIPPTLGRLSKLEILNLSSNDL 193
           ++ N + S  +P     L+ LE L+LSSN +
Sbjct: 131 VAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 65.8 bits (161), Expect = 5e-13
 Identities = 18/91 (19%), Positives = 29/91 (31%), Gaps = 1/91 (1%)

Query: 104 FSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLD 163
           F     L+      + L   S  S   ++  L  L++  +            L +L  L 
Sbjct: 392 FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLK 451

Query: 164 LSDNYLSGYIPP-TLGRLSKLEILNLSSNDL 193
           ++ N       P     L  L  L+LS   L
Sbjct: 452 MAGNSFQENFLPDIFTELRNLTFLDLSQCQL 482

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 65.4 bits (160), Expect = 5e-13
 Identities = 23/101 (22%), Positives = 37/101 (36%), Gaps = 2/101 (1%)

Query: 94  NITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEM 153
           +         F+   NL    +    L     P+   ++S LQ L +  ++   +     
Sbjct: 456 SFQENFLPDIFTELRNLTFLDLSQCQL-EQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPY 514

Query: 154 GRLRNLVHLDLSDNYLSGYIPPTLGRL-SKLEILNLSSNDL 193
             L +L  LD S N++       L    S L  LNL+ ND 
Sbjct: 515 KCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 555

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 62.0 bits (151), Expect = 8e-12
 Identities = 16/70 (22%), Positives = 24/70 (34%), Gaps = 2/70 (2%)

Query: 124 SIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLSDNYLSGYIPPTLGRLSKL 183
            IP  +      + L+L  + L  +          L  LDLS   +          LS L
Sbjct: 21  KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHL 78

Query: 184 EILNLSSNDL 193
             L L+ N +
Sbjct: 79  STLILTGNPI 88

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 56.6 bits (137), Expect = 6e-10
 Identities = 23/95 (24%), Positives = 38/95 (40%), Gaps = 6/95 (6%)

Query: 104 FSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGI-IPLEMGRLRNLVHL 162
           FS   +L+        L +      I  +  L+ L +  + +    +P     L NL HL
Sbjct: 96  FSGLSSLQKLVAVETNL-ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHL 154

Query: 163 DLSDNYLSGYIPPTLGRLSKLEI----LNLSSNDL 193
           DLS N +       L  L ++ +    L+LS N +
Sbjct: 155 DLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPM 189

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 55.4 bits (134), Expect = 2e-09
 Identities = 23/98 (23%), Positives = 39/98 (39%), Gaps = 6/98 (6%)

Query: 98  ELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLT--GIIPLEMGR 155
           + G+F      +LK     SN    G        +  L+ L+L  + L+  G        
Sbjct: 315 KFGQFPTLKLKSLKRLTFTSN---KGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFG 371

Query: 156 LRNLVHLDLSDNYLSGYIPPTLGRLSKLEILNLSSNDL 193
             +L +LDLS N +   +      L +LE L+   ++L
Sbjct: 372 TTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNL 408

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 55.4 bits (134), Expect = 2e-09
 Identities = 20/94 (21%), Positives = 33/94 (35%), Gaps = 3/94 (3%)

Query: 102 FKFSCFPNLKSFKIHSNYL-LSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLV 160
           F     P+L+   +  N L   G         + L+ L+L  + +  +    +G L  L 
Sbjct: 341 FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLG-LEQLE 399

Query: 161 HLDLSDNYLSGYIPP-TLGRLSKLEILNLSSNDL 193
           HLD   + L           L  L  L++S    
Sbjct: 400 HLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT 433

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 50.8 bits (122), Expect = 6e-08
 Identities = 21/118 (17%), Positives = 40/118 (33%), Gaps = 28/118 (23%)

Query: 104 FSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRN----- 158
                 LK   +  N + S  +P   + ++ L+ L+L S+ +  I   ++  L       
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLN 179

Query: 159 ----------------------LVHLDLSDNYLSGYIPPT-LGRLSKLEILNLSSNDL 193
                                 L  L L +N+ S  +  T +  L+ LE+  L   + 
Sbjct: 180 LSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEF 237

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 50.4 bits (121), Expect = 7e-08
 Identities = 26/111 (23%), Positives = 42/111 (37%), Gaps = 24/111 (21%)

Query: 104 FSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLR------ 157
           F+C  N+ SF + S  +       + +     Q LEL +        L++  L+      
Sbjct: 278 FNCLTNVSSFSLVSVTI---ERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTS 334

Query: 158 -------------NLVHLDLSDNYLS--GYIPPTLGRLSKLEILNLSSNDL 193
                        +L  LDLS N LS  G    +    + L+ L+LS N +
Sbjct: 335 NKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGV 385

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 45.0 bits (107), Expect = 6e-06
 Identities = 17/112 (15%), Positives = 33/112 (29%), Gaps = 7/112 (6%)

Query: 88  LWYENDNITGELGRFKFSCFPNLKSFKIHSNYL-----LSGSIPSEIAAVSMLQTLELPS 142
           L        G L +F  S    L +  I    L         I      ++ + +  L S
Sbjct: 232 LVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVS 291

Query: 143 SSLTGIIPLEMGRLRNLVHLDLSDNYLSGYIPPTLGRLSKLEILNLSSNDLY 194
            ++  +            HL+L +     +    L  L +L   +    + +
Sbjct: 292 VTIERVKDF--SYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAF 341

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 43.9 bits (104), Expect = 1e-05
 Identities = 13/94 (13%), Positives = 30/94 (31%), Gaps = 4/94 (4%)

Query: 104 FSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRL-RNLVHL 162
           F+   +L+   +  N             ++ LQ L+   + +      E+     +L  L
Sbjct: 490 FNSLSSLQVLNMSHN-NFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFL 548

Query: 163 DLSDNYLSGYIPPT--LGRLSKLEILNLSSNDLY 194
           +L+ N  +        L  +     L +    + 
Sbjct: 549 NLTQNDFACTCEHQSFLQWIKDQRQLLVEVERME 582

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 42.7 bits (101), Expect = 3e-05
 Identities = 15/94 (15%), Positives = 31/94 (32%), Gaps = 9/94 (9%)

Query: 109 NLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEM---GRLRNLVHLDLS 165
            L    + +N+     + + I  ++ L+   L          LE      L  L +L + 
Sbjct: 201 RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIE 260

Query: 166 DNYLS------GYIPPTLGRLSKLEILNLSSNDL 193
           +  L+        I      L+ +   +L S  +
Sbjct: 261 EFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTI 294

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 72.0 bits (177), Expect = 4e-15
 Identities = 19/90 (21%), Positives = 36/90 (40%), Gaps = 1/90 (1%)

Query: 104 FSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLD 163
                 ++   I  N L +  + + +  +  L  LE   + L G +P   G    L  L+
Sbjct: 301 APVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLN 359

Query: 164 LSDNYLSGYIPPTLGRLSKLEILNLSSNDL 193
           L+ N ++       G   ++E L+ + N L
Sbjct: 360 LAYNQITEIPANFCGFTEQVENLSFAHNKL 389

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 68.1 bits (167), Expect = 7e-14
 Identities = 11/86 (12%), Positives = 32/86 (37%), Gaps = 6/86 (6%)

Query: 108 PNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLSDN 167
             L+ F + ++         E       +      +       L+   L++L  +++ + 
Sbjct: 206 TKLRQFYMGNSPF-VAENICEA-----WENENSEYAQQYKTEDLKWDNLKDLTDVEVYNC 259

Query: 168 YLSGYIPPTLGRLSKLEILNLSSNDL 193
                +P  L  L +++++N++ N  
Sbjct: 260 PNLTKLPTFLKALPEMQLINVACNRG 285

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 64.7 bits (158), Expect = 1e-12
 Identities = 24/164 (14%), Positives = 40/164 (24%), Gaps = 32/164 (19%)

Query: 58  NWATGNYTSYHCKWTGVSCNSAGSVIGVSLLWYENDNITG----ELGRFKF--------- 104
           NW             GVS NS G V G+SL   E    +G     +G+            
Sbjct: 59  NWNFNKELDMWGAQPGVSLNSNGRVTGLSL---EGFGASGRVPDAIGQLTELEVLALGSH 115

Query: 105 -----------SCFPNLKSFKIHSNYL--LSGSIPSEIAAVSM--LQTLELPSSSLTGII 149
                             S +           +            L    + S      I
Sbjct: 116 GEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSI 175

Query: 150 PLEMGRLRNLVHLDLSDNYLSGYIPPTLGRLSKLEILNLSSNDL 193
                       +    N ++  +   + RL+KL    + ++  
Sbjct: 176 KKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPF 218

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 63.9 bits (156), Expect = 2e-12
 Identities = 15/97 (15%), Positives = 36/97 (37%), Gaps = 7/97 (7%)

Query: 104 FSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGI-------IPLEMGRL 156
                 +++     N L       +  +VS++  ++   + +  +       +     + 
Sbjct: 373 CGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKG 432

Query: 157 RNLVHLDLSDNYLSGYIPPTLGRLSKLEILNLSSNDL 193
            N+  ++LS+N +S +        S L  +NL  N L
Sbjct: 433 INVSSINLSNNQISKFPKELFSTGSPLSSINLMGNML 469

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 62.8 bits (153), Expect = 5e-12
 Identities = 15/136 (11%), Positives = 42/136 (30%), Gaps = 16/136 (11%)

Query: 67  YHCKWTGVSCNSAGSVIGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIP 126
            +  +   +   A           +      +    K     +L   ++++   L   +P
Sbjct: 214 GNSPFVAENICEAWENENSEYA-QQYKTEDLKWDNLK-----DLTDVEVYNCPNL-TKLP 266

Query: 127 SEIAAVSMLQTLEL--------PSSSLTGIIPLEMGRLRNLVHLDLSDNYL-SGYIPPTL 177
           + + A+  +Q + +                   +      +  + +  N L +  +  +L
Sbjct: 267 TFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSL 326

Query: 178 GRLSKLEILNLSSNDL 193
            ++ KL +L    N L
Sbjct: 327 QKMKKLGMLECLYNQL 342

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 62.4 bits (152), Expect = 7e-12
 Identities = 20/96 (20%), Positives = 33/96 (34%), Gaps = 11/96 (11%)

Query: 107 FPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGI-------IPLEMGRLRNL 159
             N+ S  + +N  +S       +  S L ++ L  + LT I                 L
Sbjct: 432 GINVSSINLSNN-QISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLL 490

Query: 160 VHLDLSDNYLSGYIPPTL--GRLSKLEILNLSSNDL 193
             +DL  N L+  +        L  L  ++LS N  
Sbjct: 491 TSIDLRFNKLTK-LSDDFRATTLPYLVGIDLSYNSF 525

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 62.0 bits (151), Expect = 9e-12
 Identities = 19/98 (19%), Positives = 32/98 (32%), Gaps = 11/98 (11%)

Query: 104 FSCFPNLKSFKIHSNYLLSGSIPSEIAAVSM--LQTLELPSSSLTGIIPLEMGRLRNLVH 161
           F     L S  +  N L    +  +  A ++  L  ++L  +S +   P +      L  
Sbjct: 484 FKNTYLLTSIDLRFNKL--TKLSDDFRATTLPYLVGIDLSYNSFSKF-PTQPLNSSTLKG 540

Query: 162 L------DLSDNYLSGYIPPTLGRLSKLEILNLSSNDL 193
                  D   N      P  +     L  L + SND+
Sbjct: 541 FGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI 578

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 61.2 bits (149), Expect = 1e-11
 Identities = 11/99 (11%), Positives = 27/99 (27%), Gaps = 13/99 (13%)

Query: 108 PNLKSFKIHSNYLLS------GSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVH 161
             + +     N + S        +         + ++ L ++ ++            L  
Sbjct: 402 SVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSS 461

Query: 162 LDLSDNYLSG-------YIPPTLGRLSKLEILNLSSNDL 193
           ++L  N L+                   L  ++L  N L
Sbjct: 462 INLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKL 500

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 60.1 bits (146), Expect = 5e-11
 Identities = 13/98 (13%), Positives = 31/98 (31%), Gaps = 11/98 (11%)

Query: 102 FKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSS------SLTGIIPLEMGR 155
           F+ +  P L    +  N       P++    S L+   + +             P  +  
Sbjct: 507 FRATTLPYLVGIDLSYNSF--SKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITL 564

Query: 156 LRNLVHLDLSDNYLSGYIPPTLGRLSKLEILNLSSNDL 193
             +L  L +  N +   +   +     + +L++  N  
Sbjct: 565 CPSLTQLQIGSNDIRK-VNEKI--TPNISVLDIKDNPN 599

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 52.4 bits (126), Expect = 2e-08
 Identities = 15/89 (16%), Positives = 27/89 (30%), Gaps = 8/89 (8%)

Query: 108 PNLKSFKIHSNYLLS-----GSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHL 162
             LK F I +             P  I     L  L++ S+ +  +         N+  L
Sbjct: 536 STLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNE---KITPNISVL 592

Query: 163 DLSDNYLSGYIPPTLGRLSKLEILNLSSN 191
           D+ DN         +    +  +  L  +
Sbjct: 593 DIKDNPNISIDLSYVCPYIEAGMYMLFYD 621

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 69.6 bits (171), Expect = 2e-14
 Identities = 29/90 (32%), Positives = 40/90 (44%), Gaps = 1/90 (1%)

Query: 104 FSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLD 163
               P LK   +  N L S       A  + L  L L S+S+  I      + +NL+ LD
Sbjct: 69  CQKLPMLKVLNLQHNEL-SQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLD 127

Query: 164 LSDNYLSGYIPPTLGRLSKLEILNLSSNDL 193
           LS N LS     T  +L  L+ L LS+N +
Sbjct: 128 LSHNGLSSTKLGTQVQLENLQELLLSNNKI 157

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 68.9 bits (169), Expect = 4e-14
 Identities = 22/90 (24%), Positives = 34/90 (37%), Gaps = 1/90 (1%)

Query: 104 FSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLD 163
           F+ +  L S  +  N + S   P     + ML+ L L  + L+ +         NL  L 
Sbjct: 45  FTRYSQLTSLDVGFNTI-SKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELH 103

Query: 164 LSDNYLSGYIPPTLGRLSKLEILNLSSNDL 193
           L  N +         +   L  L+LS N L
Sbjct: 104 LMSNSIQKIKNNPFVKQKNLITLDLSHNGL 133

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 67.7 bits (166), Expect = 1e-13
 Identities = 21/97 (21%), Positives = 30/97 (30%), Gaps = 7/97 (7%)

Query: 104 FSCFPNLKSFKIHSNYL-------LSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRL 156
                 L+   +  N L         G     +  +S L  L L S+    I       L
Sbjct: 500 LEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDL 559

Query: 157 RNLVHLDLSDNYLSGYIPPTLGRLSKLEILNLSSNDL 193
             L  +DL  N L+            L+ LNL  N +
Sbjct: 560 FELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLI 596

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 66.2 bits (162), Expect = 4e-13
 Identities = 32/102 (31%), Positives = 44/102 (43%), Gaps = 3/102 (2%)

Query: 94  NITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGI--IPL 151
            I  EL   ++    N+    +  N        +  A V  LQ L L   +L  +   P 
Sbjct: 416 EIGQELTGQEWRGLENIFEIYLSYN-KYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPS 474

Query: 152 EMGRLRNLVHLDLSDNYLSGYIPPTLGRLSKLEILNLSSNDL 193
               LRNL  LDLS+N ++      L  L KLEIL+L  N+L
Sbjct: 475 PFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNL 516

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 65.8 bits (161), Expect = 4e-13
 Identities = 20/87 (22%), Positives = 36/87 (41%), Gaps = 1/87 (1%)

Query: 107 FPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLSD 166
             N+    +  N L      +     S L +L++  ++++ + P    +L  L  L+L  
Sbjct: 24  PTNITVLNLTHNQL-RRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQH 82

Query: 167 NYLSGYIPPTLGRLSKLEILNLSSNDL 193
           N LS     T    + L  L+L SN +
Sbjct: 83  NELSQLSDKTFAFCTNLTELHLMSNSI 109

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 63.5 bits (155), Expect = 3e-12
 Identities = 23/99 (23%), Positives = 39/99 (39%), Gaps = 10/99 (10%)

Query: 104 FSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSS---------SLTGIIPLEMG 154
           F+  P L+ F +  N +        +  +  ++ L L  S         SL  I      
Sbjct: 268 FAWLPQLEYFFLEYNNI-QHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQ 326

Query: 155 RLRNLVHLDLSDNYLSGYIPPTLGRLSKLEILNLSSNDL 193
            L+ L HL++ DN + G        L  L+ L+LS++  
Sbjct: 327 WLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFT 365

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 61.9 bits (151), Expect = 1e-11
 Identities = 29/99 (29%), Positives = 42/99 (42%), Gaps = 9/99 (9%)

Query: 104 FSCFPNLKSFKIHSNYLLS-GSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHL 162
           F+  P+L+   +    L +  S PS    +  L  L+L ++++  I    +  L  L  L
Sbjct: 450 FALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEIL 509

Query: 163 DLSDNYLS--------GYIPPTLGRLSKLEILNLSSNDL 193
           DL  N L+        G     L  LS L ILNL SN  
Sbjct: 510 DLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGF 548

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 61.2 bits (149), Expect = 2e-11
 Identities = 23/104 (22%), Positives = 41/104 (39%), Gaps = 5/104 (4%)

Query: 94  NITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEI---AAVSMLQTLELPSSSLTGIIP 150
           +I G +    F+   NLK   + +++    ++ +E     A S L  L L  + ++ I  
Sbjct: 340 DIPG-IKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIES 398

Query: 151 LEMGRLRNLVHLDLSDNYLSGYIPP-TLGRLSKLEILNLSSNDL 193
                L +L  LDL  N +   +       L  +  + LS N  
Sbjct: 399 DAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKY 442

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 60.4 bits (147), Expect = 3e-11
 Identities = 22/95 (23%), Positives = 39/95 (41%), Gaps = 6/95 (6%)

Query: 104 FSCFPNLKSFKIHSNYLLSGSIPSEIAAV---SMLQTLELPSSSLTGIIPLEMGRLR--N 158
           F     L    +++   L  S+  ++      + ++ L L +S L+         L+  N
Sbjct: 191 FHAIGRLFGLFLNNV-QLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTN 249

Query: 159 LVHLDLSDNYLSGYIPPTLGRLSKLEILNLSSNDL 193
           L  LDLS N L+     +   L +LE   L  N++
Sbjct: 250 LTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNI 284

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 60.0 bits (146), Expect = 4e-11
 Identities = 21/92 (22%), Positives = 39/92 (42%), Gaps = 3/92 (3%)

Query: 104 FSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIP--LEMGRLRNLVH 161
           F    NL +  +  N  LS +       +  LQ L L ++ +  +    L++    +L  
Sbjct: 117 FVKQKNLITLDLSHN-GLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKK 175

Query: 162 LDLSDNYLSGYIPPTLGRLSKLEILNLSSNDL 193
           L+LS N +  + P     + +L  L L++  L
Sbjct: 176 LELSSNQIKEFSPGCFHAIGRLFGLFLNNVQL 207

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 59.6 bits (145), Expect = 5e-11
 Identities = 25/92 (27%), Positives = 37/92 (40%), Gaps = 3/92 (3%)

Query: 104 FSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLD 163
           F+   NL    + SN +      +       L TL+L  + L+        +L NL  L 
Sbjct: 93  FAFCTNLTELHLMSNSI-QKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELL 151

Query: 164 LSDNYLSGYIPPTLG--RLSKLEILNLSSNDL 193
           LS+N +       L     S L+ L LSSN +
Sbjct: 152 LSNNKIQALKSEELDIFANSSLKKLELSSNQI 183

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 59.6 bits (145), Expect = 6e-11
 Identities = 18/93 (19%), Positives = 34/93 (36%), Gaps = 4/93 (4%)

Query: 104 FSCFPNLKSFKIHSNYLLSGSIP-SEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHL 162
           FS   +L+   +  N +    +   E   +  +  + L  +    +       + +L  L
Sbjct: 401 FSWLGHLEVLDLGLNEI-GQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRL 459

Query: 163 DLSDNYLSG--YIPPTLGRLSKLEILNLSSNDL 193
            L    L      P     L  L IL+LS+N++
Sbjct: 460 MLRRVALKNVDSSPSPFQPLRNLTILDLSNNNI 492

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 58.9 bits (143), Expect = 1e-10
 Identities = 15/92 (16%), Positives = 34/92 (36%), Gaps = 3/92 (3%)

Query: 102 FKFSCFPNLKSFKIHSNYLLSGSIPSEIA--AVSMLQTLELPSSSLTGIIPLEMGRLRNL 159
                  ++++  + ++ L S +  +       + L  L+L  ++L  +       L  L
Sbjct: 216 CLELANTSIRNLSLSNSQL-STTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQL 274

Query: 160 VHLDLSDNYLSGYIPPTLGRLSKLEILNLSSN 191
            +  L  N +      +L  L  +  LNL  +
Sbjct: 275 EYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRS 306

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 58.5 bits (142), Expect = 1e-10
 Identities = 20/95 (21%), Positives = 37/95 (38%), Gaps = 6/95 (6%)

Query: 104 FSCFPNLKSFKIHSNYLLSGSIPSEIAAV--SMLQTLELPSSSLTGIIPLEMGRLRNLVH 161
                NL+   + +N +       E+     S L+ LEL S+ +    P     +  L  
Sbjct: 141 QVQLENLQELLLSNNKI-QALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFG 199

Query: 162 LDLSDNYLSGYIPPTLG---RLSKLEILNLSSNDL 193
           L L++  L   +   L      + +  L+LS++ L
Sbjct: 200 LFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQL 234

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 56.5 bits (137), Expect = 7e-10
 Identities = 14/91 (15%), Positives = 29/91 (31%), Gaps = 2/91 (2%)

Query: 104 FSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLD 163
                +L    + SN             +  L+ ++L  ++L  +         +L  L+
Sbjct: 532 LKGLSHLHILNLESNGF-DEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLN 590

Query: 164 LSDNYLSGYIPPTLGR-LSKLEILNLSSNDL 193
           L  N ++       G     L  L++  N  
Sbjct: 591 LQKNLITSVEKKVFGPAFRNLTELDMRFNPF 621

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 55.0 bits (133), Expect = 2e-09
 Identities = 23/102 (22%), Positives = 41/102 (40%), Gaps = 7/102 (6%)

Query: 98  ELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLR 157
           ++  F F     L+   +  N  + G   +    +  L+ L L S+S T +  L      
Sbjct: 319 KIDDFSFQWLKCLEHLNMEDN-DIPGIKSNMFTGLINLKYLSL-SNSFTSLRTLTNETFV 376

Query: 158 N-----LVHLDLSDNYLSGYIPPTLGRLSKLEILNLSSNDLY 194
           +     L  L+L+ N +S         L  LE+L+L  N++ 
Sbjct: 377 SLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIG 418

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 40.8 bits (96), Expect = 1e-04
 Identities = 18/91 (19%), Positives = 33/91 (36%), Gaps = 5/91 (5%)

Query: 104 FSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGR-LRNLVHL 162
           F     LK   +  N  L+    S       L++L L  + +T +     G   RNL  L
Sbjct: 556 FKDLFELKIIDLGLN-NLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTEL 614

Query: 163 DLSDNYLSGYIPPTLGRLSKLEILNLSSNDL 193
           D+  N        ++     +  +N +  ++
Sbjct: 615 DMRFNPFDC-TCESIAWF--VNWINETHTNI 642

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 67.6 bits (165), Expect = 1e-13
 Identities = 12/86 (13%), Positives = 27/86 (31%), Gaps = 9/86 (10%)

Query: 117 SNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLSDNYLSGY---- 172
                  +     + +  L  +EL +      +P  +  L  L  L+++ N         
Sbjct: 475 DYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLK 534

Query: 173 -----IPPTLGRLSKLEILNLSSNDL 193
                +        K++I  +  N+L
Sbjct: 535 ADWTRLADDEDTGPKIQIFYMGYNNL 560

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 63.0 bits (153), Expect = 4e-12
 Identities = 17/98 (17%), Positives = 37/98 (37%), Gaps = 11/98 (11%)

Query: 102 FKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLEL------PSSSLTGIIPLEMGR 155
           F+ +  P L +  +  N     S P++    S L+   +        + +    P  +  
Sbjct: 747 FRATTLPYLSNMDVSYNCF--SSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITT 804

Query: 156 LRNLVHLDLSDNYLSGYIPPTLGRLSKLEILNLSSNDL 193
             +L+ L +  N +   +   L    +L IL+++ N  
Sbjct: 805 CPSLIQLQIGSNDIRK-VDEKL--TPQLYILDIADNPN 839

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 61.0 bits (148), Expect = 2e-11
 Identities = 15/98 (15%), Positives = 33/98 (33%), Gaps = 11/98 (11%)

Query: 104 FSCFPNLKSFKIHSNYLLSGSIPSEIAAVSM--LQTLELPSSSLTGIIPLEMGRLRNLVH 161
           +     L +  +  N L   S+  +  A ++  L  +++  +  +   P +      L  
Sbjct: 724 YKNTYLLTTIDLRFNKL--TSLSDDFRATTLPYLSNMDVSYNCFSSF-PTQPLNSSQLKA 780

Query: 162 LDL------SDNYLSGYIPPTLGRLSKLEILNLSSNDL 193
             +        N +    P  +     L  L + SND+
Sbjct: 781 FGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI 818

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 60.7 bits (147), Expect = 3e-11
 Identities = 14/97 (14%), Positives = 35/97 (36%), Gaps = 9/97 (9%)

Query: 104 FSCFPNLKSFKIHSNYLLSGSIPSEIAAVSM--LQTLELPSSSLTGIIP-----LEMGRL 156
            +    ++      N L    IP+   A S+  + +++   + +          ++  + 
Sbjct: 615 CAFTDQVEGLGFSHNKL--KYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKG 672

Query: 157 RNLVHLDLSDNYLSGYIPPTLGRLSKLEILNLSSNDL 193
            N   + LS N +  +        S +  + LS+N +
Sbjct: 673 INASTVTLSYNEIQKFPTELFATGSPISTIILSNNLM 709

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 56.0 bits (135), Expect = 1e-09
 Identities = 20/110 (18%), Positives = 37/110 (33%), Gaps = 14/110 (12%)

Query: 93  DNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGI---- 148
            NI+  +  +K     N  +  +  N  +        A  S + T+ L ++ +T I    
Sbjct: 661 RNISCSMDDYKGI---NASTVTLSYN-EIQKFPTELFATGSPISTIILSNNLMTSIPENS 716

Query: 149 ---IPLEMGRLRNLVHLDLSDNYLSGYIPPTL--GRLSKLEILNLSSNDL 193
                        L  +DL  N L+  +        L  L  +++S N  
Sbjct: 717 LKPKDGNYKNTYLLTTIDLRFNKLTS-LSDDFRATTLPYLSNMDVSYNCF 765

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 56.0 bits (135), Expect = 1e-09
 Identities = 18/91 (19%), Positives = 31/91 (34%), Gaps = 4/91 (4%)

Query: 104 FSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLD 163
               P ++ F +  N L      + +  +  L  L+   + +  +     G    L  L 
Sbjct: 544 EDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLEAF--GTNVKLTDLK 601

Query: 164 LSDNYLSGYIPPTLGR-LSKLEILNLSSNDL 193
           L  N +   IP        ++E L  S N L
Sbjct: 602 LDYNQIEE-IPEDFCAFTDQVEGLGFSHNKL 631

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 56.0 bits (135), Expect = 1e-09
 Identities = 14/111 (12%), Positives = 28/111 (25%), Gaps = 11/111 (9%)

Query: 94  NITGELGRFKFSCFPNLKSFKIHSNYLLS----GSIPSEIAAVSMLQTLELPSSSLTGII 149
            +      F       + S     N + S     S   +        T+ L  + +    
Sbjct: 630 KLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFP 689

Query: 150 PLEMGRLRNLVHLDLSDNYLS-------GYIPPTLGRLSKLEILNLSSNDL 193
                    +  + LS+N ++                   L  ++L  N L
Sbjct: 690 TELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKL 740

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 53.3 bits (128), Expect = 8e-09
 Identities = 8/51 (15%), Positives = 23/51 (45%)

Query: 143 SSLTGIIPLEMGRLRNLVHLDLSDNYLSGYIPPTLGRLSKLEILNLSSNDL 193
                   +++     +  L L+     G +P  +G+L++L++L+  ++  
Sbjct: 309 DMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSE 359

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 53.3 bits (128), Expect = 9e-09
 Identities = 22/170 (12%), Positives = 45/170 (26%), Gaps = 32/170 (18%)

Query: 52  TGWWVNNWATGNYTSYHCKWTGVSCNSAGSVIGVSLLWYENDNITGELGRFKFSCFPNLK 111
                 NW             GV  ++ G V G+SL         G +          LK
Sbjct: 295 NTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGLSL---AGFGAKGRVPD-AIGQLTELK 350

Query: 112 SFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLSDNYLSG 171
                ++             ++   + E           + +   + L   DL  + ++ 
Sbjct: 351 VLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINR 410

Query: 172 ----------------------------YIPPTLGRLSKLEILNLSSNDL 193
                                       +I   + RL+KL+I+  +++  
Sbjct: 411 NPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPF 460

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 51.4 bits (123), Expect = 4e-08
 Identities = 16/97 (16%), Positives = 30/97 (30%), Gaps = 9/97 (9%)

Query: 104 FSCFPNLKSFKIHSNYLLSGSIPSEI-AAVSMLQTLELPSSSLTGI-IPLEMGRLRNLVH 161
           F     L   K+  N +    IP +  A    ++ L    + L  I        +  +  
Sbjct: 591 FGTNVKLTDLKLDYNQI--EEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGS 648

Query: 162 LDLSDNYLSGYIP-----PTLGRLSKLEILNLSSNDL 193
           +D S N +              +      + LS N++
Sbjct: 649 VDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEI 685

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 51.0 bits (122), Expect = 5e-08
 Identities = 8/75 (10%), Positives = 21/75 (28%)

Query: 120 LLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLSDNYLSGYIPPTLGR 179
           +       ++     +  L L      G +P  +G+L  L  L    +  +         
Sbjct: 310 MWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDE 369

Query: 180 LSKLEILNLSSNDLY 194
               ++     + + 
Sbjct: 370 ELTPDMSEERKHRIR 384

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 49.5 bits (118), Expect = 2e-07
 Identities = 14/92 (15%), Positives = 24/92 (26%), Gaps = 6/92 (6%)

Query: 104 FSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLD 163
                 L       N +              L  L+L  + +  I          +  L 
Sbjct: 569 LQKMVKLGLLDCVHNKV---RHLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLG 625

Query: 164 LSDNYLSGYIPPT--LGRLSKLEILNLSSNDL 193
            S N L   IP       +  +  ++ S N +
Sbjct: 626 FSHNKLKY-IPNIFNAKSVYVMGSVDFSYNKI 656

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 45.6 bits (108), Expect = 3e-06
 Identities = 12/147 (8%), Positives = 33/147 (22%), Gaps = 28/147 (19%)

Query: 72  TGVSCNSAGSVIGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAA 131
           T          +   +       I     +        L    +  + +       E+  
Sbjct: 360 TVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNP---EMKP 416

Query: 132 VSMLQTLELPSSSLTGI------IPLEMGRLRNLVHLDLSDNYLSG-------------- 171
           +     + L  + +  +      I   + RL  L  +  +++  +               
Sbjct: 417 IKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDY 476

Query: 172 -----YIPPTLGRLSKLEILNLSSNDL 193
                    +   L  L  + L +   
Sbjct: 477 AKQYENEELSWSNLKDLTDVELYNCPN 503

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 42.6 bits (100), Expect = 4e-05
 Identities = 11/85 (12%), Positives = 30/85 (35%), Gaps = 3/85 (3%)

Query: 109 NLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLSDNY 168
            ++  +      +    P+ I     L  L++ S+ +  +   ++     L  LD++DN 
Sbjct: 782 GIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKV-DEKL--TPQLYILDIADNP 838

Query: 169 LSGYIPPTLGRLSKLEILNLSSNDL 193
                  ++    +  +  L  +  
Sbjct: 839 NISIDVTSVCPYIEAGMYVLLYDKT 863

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 66.6 bits (163), Expect = 3e-13
 Identities = 22/91 (24%), Positives = 40/91 (43%), Gaps = 3/91 (3%)

Query: 104 FSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLD 163
           F CF  L+   + + +L    +PS +  +S L+ L L ++    +  +      +L HL 
Sbjct: 274 FHCFSGLQELDLTATHL--SELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLS 331

Query: 164 LSDNYLSGYIPP-TLGRLSKLEILNLSSNDL 193
           +  N     +    L  L  L  L+LS +D+
Sbjct: 332 IKGNTKRLELGTGCLENLENLRELDLSHDDI 362

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 63.9 bits (156), Expect = 2e-12
 Identities = 20/90 (22%), Positives = 30/90 (33%), Gaps = 1/90 (1%)

Query: 104 FSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLD 163
           FS   NL    +    +          +   L TL L ++ L  +    +   + L HL 
Sbjct: 53  FSRLINLTFLDLTRCQI-YWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLF 111

Query: 164 LSDNYLSGYIPPTLGRLSKLEILNLSSNDL 193
                +S      L     LE L L SN +
Sbjct: 112 FIQTGISSIDFIPLHNQKTLESLYLGSNHI 141

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 63.1 bits (154), Expect = 3e-12
 Identities = 17/90 (18%), Positives = 37/90 (41%), Gaps = 1/90 (1%)

Query: 104 FSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLD 163
           F     L +  + +N  L     + ++    L+ L    + ++ I  + +   + L  L 
Sbjct: 77  FQSQHRLDTLVLTAN-PLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLY 135

Query: 164 LSDNYLSGYIPPTLGRLSKLEILNLSSNDL 193
           L  N++S    P      KL++L+  +N +
Sbjct: 136 LGSNHISSIKLPKGFPTEKLKVLDFQNNAI 165

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 59.3 bits (144), Expect = 7e-11
 Identities = 21/103 (20%), Positives = 32/103 (31%), Gaps = 4/103 (3%)

Query: 94  NITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEM 153
            +  +  +  F     LK   +  + L   S       +  LQ L L  +        + 
Sbjct: 411 RLKVKDAQSPFQNLHLLKVLNLSHSLL-DISSEQLFDGLPALQHLNLQGNHFPKGNIQKT 469

Query: 154 G---RLRNLVHLDLSDNYLSGYIPPTLGRLSKLEILNLSSNDL 193
                L  L  L LS   LS         L  +  ++LS N L
Sbjct: 470 NSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRL 512

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 59.3 bits (144), Expect = 7e-11
 Identities = 26/93 (27%), Positives = 35/93 (37%), Gaps = 3/93 (3%)

Query: 104 FSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLD 163
           F   P L+   +    L      S    + +L+ L L  S L          L  L HL+
Sbjct: 396 FKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLN 455

Query: 164 LSDNYLSGYI---PPTLGRLSKLEILNLSSNDL 193
           L  N+          +L  L +LEIL LS  DL
Sbjct: 456 LQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDL 488

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 58.1 bits (141), Expect = 2e-10
 Identities = 14/87 (16%), Positives = 25/87 (28%), Gaps = 1/87 (1%)

Query: 107 FPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLSD 166
             + +  +   N L      +  + +  L  L+L    +  I          L  L L+ 
Sbjct: 32  PNSTECLEFSFNVL-PTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTA 90

Query: 167 NYLSGYIPPTLGRLSKLEILNLSSNDL 193
           N L       L     L+ L      +
Sbjct: 91  NPLIFMAETALSGPKALKHLFFIQTGI 117

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 56.6 bits (137), Expect = 6e-10
 Identities = 20/93 (21%), Positives = 36/93 (38%), Gaps = 2/93 (2%)

Query: 102 FKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVH 161
           F+  C  +++S  +  +Y       +     S LQ L+L ++ L+ + P  +  L  L  
Sbjct: 248 FEGLCEMSVESINLQKHYF-FNISSNTFHCFSGLQELDLTATHLSEL-PSGLVGLSTLKK 305

Query: 162 LDLSDNYLSGYIPPTLGRLSKLEILNLSSNDLY 194
           L LS N        +      L  L++  N   
Sbjct: 306 LVLSANKFENLCQISASNFPSLTHLSIKGNTKR 338

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 56.6 bits (137), Expect = 7e-10
 Identities = 22/98 (22%), Positives = 37/98 (37%), Gaps = 2/98 (2%)

Query: 98  ELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGI--IPLEMGR 155
            L +   S FP+L    I  N          +  +  L+ L+L    +       L++  
Sbjct: 315 NLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRN 374

Query: 156 LRNLVHLDLSDNYLSGYIPPTLGRLSKLEILNLSSNDL 193
           L +L  L+LS N              +LE+L+L+   L
Sbjct: 375 LSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRL 412

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 55.4 bits (134), Expect = 2e-09
 Identities = 23/102 (22%), Positives = 38/102 (37%), Gaps = 2/102 (1%)

Query: 94  NITGELGRFKFSCFPNLKSFKIHSNYL-LSGSIPSEIAAVSMLQTLELPSSSLTGIIPLE 152
               ELG        NL+   +  + +  S     ++  +S LQ+L L  +    +    
Sbjct: 336 TKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEA 395

Query: 153 MGRLRNLVHLDLSDNYLSGYIPPT-LGRLSKLEILNLSSNDL 193
                 L  LDL+   L      +    L  L++LNLS + L
Sbjct: 396 FKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLL 437

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 55.0 bits (133), Expect = 2e-09
 Identities = 23/92 (25%), Positives = 39/92 (42%), Gaps = 3/92 (3%)

Query: 104 FSCFPNLKSFKIHSNYL--LSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVH 161
           F   P L+   +  N+    +    + +  +  L+ L L    L+ I       L+ + H
Sbjct: 445 FDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNH 504

Query: 162 LDLSDNYLSGYIPPTLGRLSKLEILNLSSNDL 193
           +DLS N L+      L  L  +  LNL+SN +
Sbjct: 505 VDLSHNRLTSSSIEALSHLKGI-YLNLASNHI 535

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 51.6 bits (124), Expect = 3e-08
 Identities = 20/90 (22%), Positives = 38/90 (42%), Gaps = 2/90 (2%)

Query: 104 FSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLD 163
                 L+   +    L S        ++ M+  ++L  + LT      +  L+ +  L+
Sbjct: 472 LQTLGRLEILVLSFCDL-SSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIY-LN 529

Query: 164 LSDNYLSGYIPPTLGRLSKLEILNLSSNDL 193
           L+ N++S  +P  L  LS+   +NL  N L
Sbjct: 530 LASNHISIILPSLLPILSQQRTINLRQNPL 559

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 50.8 bits (122), Expect = 7e-08
 Identities = 19/92 (20%), Positives = 33/92 (35%), Gaps = 3/92 (3%)

Query: 104 FSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLD 163
            S    LK        + S      +     L++L L S+ ++ I   +      L  LD
Sbjct: 101 LSGPKALKHLFFIQTGI-SSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLD 159

Query: 164 LSDNYLSGYIPPTLGRLSKLEI--LNLSSNDL 193
             +N +       +  L +     LNL+ ND+
Sbjct: 160 FQNNAIHYLSKEDMSSLQQATNLSLNLNGNDI 191

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 45.4 bits (108), Expect = 3e-06
 Identities = 14/94 (14%), Positives = 30/94 (31%), Gaps = 4/94 (4%)

Query: 104 FSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIP--LEMGRLRNLVH 161
            S      +  ++ N      I       ++ Q+L    +    +I   L+   +++L  
Sbjct: 173 MSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWL 232

Query: 162 LDLSDNYLSGYIPPTLGRLSK--LEILNLSSNDL 193
               D       P     L +  +E +NL  +  
Sbjct: 233 GTFEDMDDEDISPAVFEGLCEMSVESINLQKHYF 266

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 64.3 bits (157), Expect = 2e-12
 Identities = 21/90 (23%), Positives = 34/90 (37%)

Query: 104 FSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLD 163
           F    +L + K+  N     ++ +  A  + L  L+L    L  I       L  L  L+
Sbjct: 444 FLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLN 503

Query: 164 LSDNYLSGYIPPTLGRLSKLEILNLSSNDL 193
           +S N L         +L  L  L+ S N +
Sbjct: 504 MSHNNLLFLDSSHYNQLYSLSTLDCSFNRI 533

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 62.0 bits (151), Expect = 8e-12
 Identities = 18/90 (20%), Positives = 34/90 (37%), Gaps = 1/90 (1%)

Query: 104 FSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLD 163
           FS F  L+   +    +           +  L  L L  + +    P     L +L +L 
Sbjct: 52  FSNFSELQWLDLSRCEI-ETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLV 110

Query: 164 LSDNYLSGYIPPTLGRLSKLEILNLSSNDL 193
             +  L+      +G+L  L+ LN++ N +
Sbjct: 111 AVETKLASLESFPIGQLITLKKLNVAHNFI 140

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 60.8 bits (148), Expect = 2e-11
 Identities = 16/91 (17%), Positives = 33/91 (36%), Gaps = 3/91 (3%)

Query: 102 FKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEM-GRLRNLV 160
           +      +L+   +  N  +   + +    +  LQ L+   S+L  +        L  L+
Sbjct: 370 YSDLGTNSLRHLDLSFNGAII--MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLL 427

Query: 161 HLDLSDNYLSGYIPPTLGRLSKLEILNLSSN 191
           +LD+S              L+ L  L ++ N
Sbjct: 428 YLDISYTNTKIDFDGIFLGLTSLNTLKMAGN 458

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 60.8 bits (148), Expect = 2e-11
 Identities = 17/91 (18%), Positives = 40/91 (43%), Gaps = 2/91 (2%)

Query: 104 FSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLD 163
           +    +L +  +  N +     P   + ++ L+ L    + L  +    +G+L  L  L+
Sbjct: 76  WHGLHHLSNLILTGNPI-QSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLN 134

Query: 164 LSDNYLSGY-IPPTLGRLSKLEILNLSSNDL 193
           ++ N++    +P     L+ L  ++LS N +
Sbjct: 135 VAHNFIHSCKLPAYFSNLTNLVHVDLSYNYI 165

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 58.5 bits (142), Expect = 1e-10
 Identities = 15/91 (16%), Positives = 29/91 (31%), Gaps = 1/91 (1%)

Query: 104 FSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLD 163
           F     L+      + L   +  S   ++  L  L++  ++           L +L  L 
Sbjct: 395 FMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLK 454

Query: 164 LSDNYLSGYIPP-TLGRLSKLEILNLSSNDL 193
           ++ N              + L  L+LS   L
Sbjct: 455 MAGNSFKDNTLSNVFANTTNLTFLDLSKCQL 485

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 57.3 bits (139), Expect = 3e-10
 Identities = 20/87 (22%), Positives = 33/87 (37%), Gaps = 1/87 (1%)

Query: 107 FPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLSD 166
             + K+  +  N L         +  S LQ L+L    +  I       L +L +L L+ 
Sbjct: 31  PSSTKNIDLSFNPL-KILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTG 89

Query: 167 NYLSGYIPPTLGRLSKLEILNLSSNDL 193
           N +  + P +   L+ LE L      L
Sbjct: 90  NPIQSFSPGSFSGLTSLENLVAVETKL 116

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 54.7 bits (132), Expect = 3e-09
 Identities = 18/100 (18%), Positives = 32/100 (32%), Gaps = 1/100 (1%)

Query: 94  NITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEM 153
           +         F+   NL    +    L           +  LQ L +  ++L  +     
Sbjct: 459 SFKDNTLSNVFANTTNLTFLDLSKCQL-EQISWGVFDTLHRLQLLNMSHNNLLFLDSSHY 517

Query: 154 GRLRNLVHLDLSDNYLSGYIPPTLGRLSKLEILNLSSNDL 193
            +L +L  LD S N +             L   NL++N +
Sbjct: 518 NQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSV 557

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 53.9 bits (130), Expect = 6e-09
 Identities = 22/103 (21%), Positives = 33/103 (32%), Gaps = 8/103 (7%)

Query: 92  NDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPL 151
                      KF C  N+ +  +    +       ++      Q+L +    L     L
Sbjct: 269 TYTNDFSDDIVKFHCLANVSAMSLAGVSI---KYLEDVPKHFKWQSLSIIRCQLKQFPTL 325

Query: 152 EMGRLRNLVHLDLSDNYLSGYIPPTLGRLSKLEILNLSSNDLY 194
           +   L  L  L L+ N  S  I      L  L  L+LS N L 
Sbjct: 326 D---LPFLKSLTLTMNKGS--ISFKKVALPSLSYLDLSRNALS 363

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 52.0 bits (125), Expect = 3e-08
 Identities = 20/94 (21%), Positives = 39/94 (41%), Gaps = 5/94 (5%)

Query: 104 FSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNL---- 159
                 LK   +  N++ S  +P+  + ++ L  ++L  + +  I   ++  LR      
Sbjct: 124 IGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVN 183

Query: 160 VHLDLSDNYLSGYIPPTLGRLSKLEILNLSSNDL 193
           + LD+S N +  +I     +  KL  L L  N  
Sbjct: 184 LSLDMSLNPID-FIQDQAFQGIKLHELTLRGNFN 216

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 49.3 bits (118), Expect = 2e-07
 Identities = 23/95 (24%), Positives = 39/95 (41%), Gaps = 6/95 (6%)

Query: 104 FSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGI-IPLEMGRLRNLVHL 162
           FS   +L++       L +      I  +  L+ L +  + +    +P     L NLVH+
Sbjct: 100 FSGLTSLENLVAVETKL-ASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHV 158

Query: 163 DLSDNYLSGYIPPTLGRLSKL----EILNLSSNDL 193
           DLS NY+       L  L +       L++S N +
Sbjct: 159 DLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPI 193

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 47.3 bits (113), Expect = 9e-07
 Identities = 25/97 (25%), Positives = 39/97 (40%), Gaps = 6/97 (6%)

Query: 99  LGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIP--LEMGRL 156
           L +F     P LKS  +  N     SI  +  A+  L  L+L  ++L+            
Sbjct: 319 LKQFPTLDLPFLKSLTLTMNKG---SISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGT 375

Query: 157 RNLVHLDLSDNYLSGYIPPTLGRLSKLEILNLSSNDL 193
            +L HLDLS N     +      L +L+ L+   + L
Sbjct: 376 NSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTL 411

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 42.3 bits (100), Expect = 4e-05
 Identities = 12/105 (11%), Positives = 31/105 (29%), Gaps = 10/105 (9%)

Query: 99  LGRFKFSCF--PNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEM--- 153
           +   +   F    L    +  N+  S  + + +  ++ L    L          LE+   
Sbjct: 193 IDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEP 252

Query: 154 ---GRLRNLV--HLDLSDNYLSGYIPPTLGRLSKLEILNLSSNDL 193
                L ++      L+              L+ +  ++L+   +
Sbjct: 253 SIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSI 297

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 38.9 bits (91), Expect = 7e-04
 Identities = 11/107 (10%), Positives = 32/107 (29%), Gaps = 9/107 (8%)

Query: 94  NITGELGRFKFSCFPNLKSFKIHSNYL-----LSGSIPSEIAAVSMLQTLELPSS--SLT 146
             +  + +        L   ++          L    PS +  +  +   E   +  +  
Sbjct: 215 FNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDF 274

Query: 147 GIIPLEMGRLRNLVHLDLSDNYLSGYIPPTLGRLSKLEILNLSSNDL 193
               ++   L N+  + L+   +       + +  K + L++    L
Sbjct: 275 SDDIVKFHCLANVSAMSLAGVSIKY--LEDVPKHFKWQSLSIIRCQL 319

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 61.5 bits (150), Expect = 1e-11
 Identities = 22/99 (22%), Positives = 42/99 (42%), Gaps = 3/99 (3%)

Query: 93  DNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLE 152
           + +       +     NL+S ++    + S  +P+ IA +  L++L++ +S L+ +    
Sbjct: 168 EPLASTDASGEHQGLVNLQSLRLEWTGIRS--LPASIANLQNLKSLKIRNSPLSAL-GPA 224

Query: 153 MGRLRNLVHLDLSDNYLSGYIPPTLGRLSKLEILNLSSN 191
           +  L  L  LDL         PP  G  + L+ L L   
Sbjct: 225 IHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDC 263

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 58.8 bits (143), Expect = 7e-11
 Identities = 21/90 (23%), Positives = 37/90 (41%), Gaps = 5/90 (5%)

Query: 107 FPNLKSFKIHSNYLLS-GSIPSEIAAVSM--LQTLELPSSSLTGIIPLEMGRLRNLVHLD 163
             N  + +I +    +  +    +   +      LEL S  L    P +  RL +L H+ 
Sbjct: 52  QANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMT 110

Query: 164 LSDNYLSGYIPPTLGRLSKLEILNLSSNDL 193
           +    L   +P T+ + + LE L L+ N L
Sbjct: 111 IDAAGLM-ELPDTMQQFAGLETLTLARNPL 139

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 58.8 bits (143), Expect = 8e-11
 Identities = 23/99 (23%), Positives = 42/99 (42%), Gaps = 12/99 (12%)

Query: 104 FSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTL---------ELPSSSLTGIIPLEMG 154
              F  L++  +  N L   ++P+ IA+++ L+ L         ELP    +     E  
Sbjct: 123 MQQFAGLETLTLARNPL--RALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQ 180

Query: 155 RLRNLVHLDLSDNYLSGYIPPTLGRLSKLEILNLSSNDL 193
            L NL  L L    +   +P ++  L  L+ L + ++ L
Sbjct: 181 GLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPL 218

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 58.4 bits (142), Expect = 1e-10
 Identities = 18/85 (21%), Positives = 32/85 (37%), Gaps = 1/85 (1%)

Query: 109 NLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLSDNY 168
            L+   +     L  + P      + L+ L L   S    +PL++ RL  L  LDL    
Sbjct: 230 KLEELDLRGCTALR-NYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCV 288

Query: 169 LSGYIPPTLGRLSKLEILNLSSNDL 193
               +P  + +L    I+ +  +  
Sbjct: 289 NLSRLPSLIAQLPANCIILVPPHLQ 313

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 56.1 bits (136), Expect = 7e-10
 Identities = 19/94 (20%), Positives = 33/94 (35%), Gaps = 12/94 (12%)

Query: 109 NLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLSDNY 168
           +L+   I +  L    +P  +   + L+TL L  + L   +P  +  L  L  L +    
Sbjct: 105 HLQHMTIDAAGL--MELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACP 161

Query: 169 LSGYIPPTLGR---------LSKLEILNLSSNDL 193
               +P  L           L  L+ L L    +
Sbjct: 162 ELTELPEPLASTDASGEHQGLVNLQSLRLEWTGI 195

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 52.6 bits (127), Expect = 1e-08
 Identities = 18/87 (20%), Positives = 28/87 (32%), Gaps = 3/87 (3%)

Query: 109 NLKSFKIHSNYLLSG-SIPSEIAAVSMLQTLELPSSSLTGIIP-LEMGRLRNLVHLDLSD 166
            L  ++ H N   +        A  +  Q       +L      LE       V L+L  
Sbjct: 31  VLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRS 90

Query: 167 NYLSGYIPPTLGRLSKLEILNLSSNDL 193
             L    P    RLS L+ + + +  L
Sbjct: 91  VPLP-QFPDQAFRLSHLQHMTIDAAGL 116

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 58.1 bits (141), Expect = 1e-10
 Identities = 18/96 (18%), Positives = 38/96 (39%), Gaps = 3/96 (3%)

Query: 98  ELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLR 157
            L      C   ++   +  N + + +     A+   L+ L L  + +  +    +    
Sbjct: 134 MLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV--FA 191

Query: 158 NLVHLDLSDNYLSGYIPPTLGRLSKLEILNLSSNDL 193
            L  LDLS N L+ ++ P     + +  ++L +N L
Sbjct: 192 KLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKL 226

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 56.5 bits (137), Expect = 5e-10
 Identities = 23/70 (32%), Positives = 32/70 (45%)

Query: 124 SIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLSDNYLSGYIPPTLGRLSKL 183
           +I       +  +  ++  SSL   +        N+  LDLS N LS      L   +KL
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 184 EILNLSSNDL 193
           E+LNLSSN L
Sbjct: 61  ELLNLSSNVL 70

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 54.6 bits (132), Expect = 2e-09
 Identities = 21/86 (24%), Positives = 38/86 (44%), Gaps = 3/86 (3%)

Query: 108 PNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLSDN 167
              K  K+  + L   ++ S   +   ++ L+L  + L+ I   ++     L  L+LS N
Sbjct: 10  NRYKIEKVTDSSL-KQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN 68

Query: 168 YLSGYIPPTLGRLSKLEILNLSSNDL 193
            L       L  LS L  L+L++N +
Sbjct: 69  VLYE--TLDLESLSTLRTLDLNNNYV 92

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 52.3 bits (126), Expect = 1e-08
 Identities = 14/90 (15%), Positives = 42/90 (46%), Gaps = 9/90 (10%)

Query: 104 FSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLD 163
                 L++  +++NY+       E+     ++TL   +++++ +      R +   ++ 
Sbjct: 76  LESLSTLRTLDLNNNYV------QELLVGPSIETLHAANNNISRV---SCSRGQGKKNIY 126

Query: 164 LSDNYLSGYIPPTLGRLSKLEILNLSSNDL 193
           L++N ++       G  S+++ L+L  N++
Sbjct: 127 LANNKITMLRDLDEGCRSRVQYLDLKLNEI 156

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 51.5 bits (124), Expect = 2e-08
 Identities = 23/90 (25%), Positives = 41/90 (45%), Gaps = 8/90 (8%)

Query: 104 FSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLD 163
                N+K   +  N  LS    +++A  + L+ L L S+ L   + L    L  L  LD
Sbjct: 30  RQSAWNVKELDLSGN-PLSQISAADLAPFTKLELLNLSSNVLYETLDL--ESLSTLRTLD 86

Query: 164 LSDNYLSGYIPPTLGRLSKLEILNLSSNDL 193
           L++NY+       L     +E L+ ++N++
Sbjct: 87  LNNNYVQ-----ELLVGPSIETLHAANNNI 111

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 50.0 bits (120), Expect = 9e-08
 Identities = 17/87 (19%), Positives = 35/87 (40%), Gaps = 5/87 (5%)

Query: 108 PNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLSDN 167
           P++++    +N +    +          + + L ++ +T +  L+ G    + +LDL  N
Sbjct: 99  PSIETLHAANNNI--SRVSCSR--GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLN 154

Query: 168 YLSGYIPPTL-GRLSKLEILNLSSNDL 193
            +       L      LE LNL  N +
Sbjct: 155 EIDTVNFAELAASSDTLEHLNLQYNFI 181

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 45.4 bits (108), Expect = 3e-06
 Identities = 16/89 (17%), Positives = 32/89 (35%), Gaps = 4/89 (4%)

Query: 105 SCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDL 164
             F  LK+  + SN L    +  E  + + +  + L ++ L  +I   +   +NL H DL
Sbjct: 188 VVFAKLKTLDLSSNKLAF--MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDL 244

Query: 165 SDNYLSGYIPPTLGRLSKLEILNLSSNDL 193
             N                 +  ++   +
Sbjct: 245 RGNGFH-CGTLRDFFSKNQRVQTVAKQTV 272

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 57.6 bits (140), Expect = 2e-10
 Identities = 18/90 (20%), Positives = 38/90 (42%), Gaps = 6/90 (6%)

Query: 104 FSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLD 163
            S    L +  I +N +   +  S +  ++ L+ L L   +++ I PL    L  +  L+
Sbjct: 84  LSNLVKLTNLYIGTNKI---TDISALQNLTNLRELYLNEDNISDISPL--ANLTKMYSLN 138

Query: 164 LSDNYLSGYIPPTLGRLSKLEILNLSSNDL 193
           L  N+        L  ++ L  L ++ + +
Sbjct: 139 LGANHNLS-DLSPLSNMTGLNYLTVTESKV 167

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 53.7 bits (130), Expect = 5e-09
 Identities = 24/90 (26%), Positives = 41/90 (45%), Gaps = 5/90 (5%)

Query: 104 FSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLD 163
                 LK   + SN +   S  S +  +S L +L L ++ L       +G L NL  L 
Sbjct: 261 VKDLTKLKMLNVGSNQI---SDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLF 317

Query: 164 LSDNYLSGYIPPTLGRLSKLEILNLSSNDL 193
           LS N+++   P  L  LSK++  + ++  +
Sbjct: 318 LSQNHITDIRP--LASLSKMDSADFANQVI 345

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 53.7 bits (130), Expect = 5e-09
 Identities = 22/90 (24%), Positives = 40/90 (44%), Gaps = 5/90 (5%)

Query: 104 FSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLD 163
            +    L   +I +N +   S  + +  ++ L+ L + S+ ++ I  L    L  L  L 
Sbjct: 239 LANLSQLTWLEIGTNQI---SDINAVKDLTKLKMLNVGSNQISDISVL--NNLSQLNSLF 293

Query: 164 LSDNYLSGYIPPTLGRLSKLEILNLSSNDL 193
           L++N L       +G L+ L  L LS N +
Sbjct: 294 LNNNQLGNEDMEVIGGLTNLTTLFLSQNHI 323

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 52.2 bits (126), Expect = 2e-08
 Identities = 17/90 (18%), Positives = 37/90 (41%), Gaps = 7/90 (7%)

Query: 104 FSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLD 163
            S    L    +  + +      + IA ++ L +L L  + +  I PL    L +L +  
Sbjct: 151 LSNMTGLNYLTVTESKV---KDVTPIANLTDLYSLSLNYNQIEDISPL--ASLTSLHYFT 205

Query: 164 LSDNYLSGYIPPTLGRLSKLEILNLSSNDL 193
              N ++   P  +  +++L  L + +N +
Sbjct: 206 AYVNQITDITP--VANMTRLNSLKIGNNKI 233

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 49.8 bits (120), Expect = 9e-08
 Identities = 19/90 (21%), Positives = 40/90 (44%), Gaps = 7/90 (7%)

Query: 104 FSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLD 163
            +   +L S  ++ N +      S +A+++ L       + +T I P+    +  L  L 
Sbjct: 173 IANLTDLYSLSLNYNQI---EDISPLASLTSLHYFTAYVNQITDITPV--ANMTRLNSLK 227

Query: 164 LSDNYLSGYIPPTLGRLSKLEILNLSSNDL 193
           + +N ++   P  L  LS+L  L + +N +
Sbjct: 228 IGNNKITDLSP--LANLSQLTWLEIGTNQI 255

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 49.1 bits (118), Expect = 2e-07
 Identities = 16/92 (17%), Positives = 33/92 (35%), Gaps = 7/92 (7%)

Query: 102 FKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVH 161
           F  +         +    +   +       +  +  L +    +  I  +    L NL +
Sbjct: 16  FPDADLAEGIRAVLQKASV---TDVVTQEELESITKLVVAGEKVASIQGI--EYLTNLEY 70

Query: 162 LDLSDNYLSGYIPPTLGRLSKLEILNLSSNDL 193
           L+L+ N ++   P  L  L KL  L + +N +
Sbjct: 71  LNLNGNQITDISP--LSNLVKLTNLYIGTNKI 100

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 48.3 bits (116), Expect = 3e-07
 Identities = 15/90 (16%), Positives = 41/90 (45%), Gaps = 6/90 (6%)

Query: 104 FSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLD 163
                NL+   ++ + +   S  S +A ++ + +L L ++     +   +  +  L +L 
Sbjct: 106 LQNLTNLRELYLNEDNI---SDISPLANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLT 161

Query: 164 LSDNYLSGYIPPTLGRLSKLEILNLSSNDL 193
           ++++ +    P  +  L+ L  L+L+ N +
Sbjct: 162 VTESKVKDVTP--IANLTDLYSLSLNYNQI 189

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 44.8 bits (107), Expect = 6e-06
 Identities = 9/59 (15%), Positives = 18/59 (30%), Gaps = 4/59 (6%)

Query: 135 LQTLELPSSSLTGIIPLEMGRLRNLVHLDLSDNYLSGYIPPTLGRLSKLEILNLSSNDL 193
             TL    + +  I P     L   +   L    ++     T   L  +  L ++   +
Sbjct: 2   AATLATLPAPINQIFPDA--DLAEGIRAVLQKASVTD--VVTQEELESITKLVVAGEKV 56

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 41.0 bits (97), Expect = 9e-05
 Identities = 15/67 (22%), Positives = 27/67 (40%), Gaps = 3/67 (4%)

Query: 104 FSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLD 163
            +    L S  +++N  L       I  ++ L TL L  + +T I PL    L  +   D
Sbjct: 283 LNNLSQLNSLFLNNN-QLGNEDMEVIGGLTNLTTLFLSQNHITDIRPL--ASLSKMDSAD 339

Query: 164 LSDNYLS 170
            ++  + 
Sbjct: 340 FANQVIK 346

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 57.2 bits (138), Expect = 4e-10
 Identities = 18/96 (18%), Positives = 38/96 (39%), Gaps = 3/96 (3%)

Query: 98  ELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLR 157
            L      C   ++   +  N + + +     A+   L+ L L  + +  +    +    
Sbjct: 134 MLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV--FA 191

Query: 158 NLVHLDLSDNYLSGYIPPTLGRLSKLEILNLSSNDL 193
            L  LDLS N L+ ++ P     + +  ++L +N L
Sbjct: 192 KLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKL 226

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 57.2 bits (138), Expect = 4e-10
 Identities = 23/70 (32%), Positives = 32/70 (45%)

Query: 124 SIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLSDNYLSGYIPPTLGRLSKL 183
           +I       +  +  ++  SSL   +        N+  LDLS N LS      L   +KL
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 184 EILNLSSNDL 193
           E+LNLSSN L
Sbjct: 61  ELLNLSSNVL 70

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 55.6 bits (134), Expect = 1e-09
 Identities = 21/86 (24%), Positives = 38/86 (44%), Gaps = 3/86 (3%)

Query: 108 PNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLSDN 167
              K  K+  + L   ++ S   +   ++ L+L  + L+ I   ++     L  L+LS N
Sbjct: 10  NRYKIEKVTDSSL-KQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN 68

Query: 168 YLSGYIPPTLGRLSKLEILNLSSNDL 193
            L       L  LS L  L+L++N +
Sbjct: 69  VLYE--TLDLESLSTLRTLDLNNNYV 92

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 53.3 bits (128), Expect = 7e-09
 Identities = 14/90 (15%), Positives = 42/90 (46%), Gaps = 9/90 (10%)

Query: 104 FSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLD 163
                 L++  +++NY+       E+     ++TL   +++++ +      R +   ++ 
Sbjct: 76  LESLSTLRTLDLNNNYV------QELLVGPSIETLHAANNNISRVSC---SRGQGKKNIY 126

Query: 164 LSDNYLSGYIPPTLGRLSKLEILNLSSNDL 193
           L++N ++       G  S+++ L+L  N++
Sbjct: 127 LANNKITMLRDLDEGCRSRVQYLDLKLNEI 156

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 52.5 bits (126), Expect = 2e-08
 Identities = 23/90 (25%), Positives = 41/90 (45%), Gaps = 8/90 (8%)

Query: 104 FSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLD 163
                N+K   +  N  LS    +++A  + L+ L L S+ L   + L    L  L  LD
Sbjct: 30  RQSAWNVKELDLSGN-PLSQISAADLAPFTKLELLNLSSNVLYETLDL--ESLSTLRTLD 86

Query: 164 LSDNYLSGYIPPTLGRLSKLEILNLSSNDL 193
           L++NY+       L     +E L+ ++N++
Sbjct: 87  LNNNYVQ-----ELLVGPSIETLHAANNNI 111

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 52.2 bits (125), Expect = 2e-08
 Identities = 18/90 (20%), Positives = 34/90 (37%), Gaps = 5/90 (5%)

Query: 104 FSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLD 163
            +    L+   +  N++    +  ++     L+TL+L S+ L  +   E      +  + 
Sbjct: 165 AASSDTLEHLNLQYNFIYD--VKGQVVFAK-LKTLDLSSNKLAFM-GPEFQSAAGVTWIS 220

Query: 164 LSDNYLSGYIPPTLGRLSKLEILNLSSNDL 193
           L +N L   I   L     LE  +L  N  
Sbjct: 221 LRNNKLV-LIEKALRFSQNLEHFDLRGNGF 249

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 51.0 bits (122), Expect = 5e-08
 Identities = 17/87 (19%), Positives = 35/87 (40%), Gaps = 5/87 (5%)

Query: 108 PNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLSDN 167
           P++++    +N +    +          + + L ++ +T +  L+ G    + +LDL  N
Sbjct: 99  PSIETLHAANNNI--SRVSCSRG--QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLN 154

Query: 168 YLSGYIPPTL-GRLSKLEILNLSSNDL 193
            +       L      LE LNL  N +
Sbjct: 155 EIDTVNFAELAASSDTLEHLNLQYNFI 181

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 44.8 bits (106), Expect = 7e-06
 Identities = 16/89 (17%), Positives = 32/89 (35%), Gaps = 4/89 (4%)

Query: 105 SCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDL 164
             F  LK+  + SN L    +  E  + + +  + L ++ L  +I   +   +NL H DL
Sbjct: 188 VVFAKLKTLDLSSNKLAF--MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDL 244

Query: 165 SDNYLSGYIPPTLGRLSKLEILNLSSNDL 193
             N                 +  ++   +
Sbjct: 245 RGNGFHCGTLRDF-FSKNQRVQTVAKQTV 272

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 39.8 bits (93), Expect = 3e-04
 Identities = 9/90 (10%), Positives = 21/90 (23%), Gaps = 2/90 (2%)

Query: 104 FSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLD 163
                NL+ F +  N    G++    +     +   +   ++  +               
Sbjct: 233 LRFSQNLEHFDLRGNGFHCGTLRDFFS--KNQRVQTVAKQTVKKLTGQNEEECTVPTLGH 290

Query: 164 LSDNYLSGYIPPTLGRLSKLEILNLSSNDL 193
                      P   RL  L+    +    
Sbjct: 291 YGAYCCEDLPAPFADRLIALKRKEHALLSG 320

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 57.0 bits (138), Expect = 4e-10
 Identities = 23/92 (25%), Positives = 44/92 (47%), Gaps = 4/92 (4%)

Query: 104 FSCFPNLKSFKIHSNYLLSGSIPSEI-AAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHL 162
           +    +L +  +  N + S  +     + +S LQ L    ++L  +    +G L+ L  L
Sbjct: 72  YQSLSHLSTLILTGNPIQS--LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKEL 129

Query: 163 DLSDNYL-SGYIPPTLGRLSKLEILNLSSNDL 193
           +++ N + S  +P     L+ LE L+LSSN +
Sbjct: 130 NVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 55.5 bits (134), Expect = 2e-09
 Identities = 22/103 (21%), Positives = 41/103 (39%), Gaps = 3/103 (2%)

Query: 92  NDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPL 151
           N                +LK   +  N +++  + S    +  L+ L+   S+L  +   
Sbjct: 357 NGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT--MSSNFLGLEQLEHLDFQHSNLKQMSEF 414

Query: 152 EM-GRLRNLVHLDLSDNYLSGYIPPTLGRLSKLEILNLSSNDL 193
            +   LRNL++LD+S  +           LS LE+L ++ N  
Sbjct: 415 SVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSF 457

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 54.7 bits (132), Expect = 3e-09
 Identities = 20/91 (21%), Positives = 37/91 (40%), Gaps = 3/91 (3%)

Query: 104 FSCFPNLKSFKIHSNYLLSGSIPSE-IAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHL 162
           F  FP L+   +    + +  I      ++S L TL L  + +  +       L +L  L
Sbjct: 48  FFSFPELQVLDLSRCEIQT--IEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL 105

Query: 163 DLSDNYLSGYIPPTLGRLSKLEILNLSSNDL 193
              +  L+      +G L  L+ LN++ N +
Sbjct: 106 VAVETNLASLENFPIGHLKTLKELNVAHNLI 136

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 54.0 bits (130), Expect = 6e-09
 Identities = 20/90 (22%), Positives = 36/90 (40%)

Query: 104 FSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLD 163
           F+   +L+  K+  N      +P     +  L  L+L    L  + P     L +L  L+
Sbjct: 441 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 500

Query: 164 LSDNYLSGYIPPTLGRLSKLEILNLSSNDL 193
           ++ N L         RL+ L+ + L +N  
Sbjct: 501 MASNQLKSVPDGIFDRLTSLQKIWLHTNPW 530

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 53.2 bits (128), Expect = 9e-09
 Identities = 18/91 (19%), Positives = 29/91 (31%), Gaps = 1/91 (1%)

Query: 104 FSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLD 163
           F     L+      + L   S  S   ++  L  L++  +            L +L  L 
Sbjct: 392 FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLK 451

Query: 164 LSDNYLSGYIPP-TLGRLSKLEILNLSSNDL 193
           ++ N       P     L  L  L+LS   L
Sbjct: 452 MAGNSFQENFLPDIFTELRNLTFLDLSQCQL 482

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 45.9 bits (109), Expect = 2e-06
 Identities = 23/90 (25%), Positives = 36/90 (40%), Gaps = 8/90 (8%)

Query: 104 FSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLD 163
           F+C  N+ SF + S  +       + +     Q LEL +        L   +L++L  L 
Sbjct: 278 FNCLTNVSSFSLVSVTI---ERVKDFSYNFGWQHLELVNCKFGQFPTL---KLKSLKRLT 331

Query: 164 LSDNYLSGYIPPTLGRLSKLEILNLSSNDL 193
            + N        +   L  LE L+LS N L
Sbjct: 332 FTSNKGGN--AFSEVDLPSLEFLDLSRNGL 359

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 44.3 bits (105), Expect = 1e-05
 Identities = 23/95 (24%), Positives = 38/95 (40%), Gaps = 6/95 (6%)

Query: 104 FSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGI-IPLEMGRLRNLVHL 162
           FS   +L+        L +      I  +  L+ L +  + +    +P     L NL HL
Sbjct: 96  FSGLSSLQKLVAVETNL-ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHL 154

Query: 163 DLSDNYLSGYIPPTLGRLSKLEI----LNLSSNDL 193
           DLS N +       L  L ++ +    L+LS N +
Sbjct: 155 DLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPM 189

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 39.7 bits (93), Expect = 3e-04
 Identities = 21/118 (17%), Positives = 39/118 (33%), Gaps = 28/118 (23%)

Query: 104 FSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGI--------------- 148
                 LK   +  N + S  +P   + ++ L+ L+L S+ +  I               
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLN 179

Query: 149 ------------IPLEMGRLRNLVHLDLSDNYLSGYIPPT-LGRLSKLEILNLSSNDL 193
                       I     +   L  L L +N+ S  +  T +  L+ LE+  L   + 
Sbjct: 180 LSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEF 237

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 54.8 bits (132), Expect = 3e-09
 Identities = 22/92 (23%), Positives = 34/92 (36%), Gaps = 2/92 (2%)

Query: 104 FSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLD 163
           F     L+  ++ S Y            +  L+ L+L SS +  + P     L +L  L 
Sbjct: 44  FPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELR 103

Query: 164 LSDNYLSGYIPP--TLGRLSKLEILNLSSNDL 193
           L    LS  +        L  L  L+LS N +
Sbjct: 104 LYFCGLSDAVLKDGYFRNLKALTRLDLSKNQI 135

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 51.7 bits (124), Expect = 3e-08
 Identities = 19/94 (20%), Positives = 36/94 (38%), Gaps = 3/94 (3%)

Query: 102 FKFSCFPNLKSFKIHSNYLLSGSIPSEI-AAVSMLQTLELPSSSLTGIIPLEMGRLRNLV 160
           F      +++   +   ++ S  + S +   +  L+ L L  + +  I       L NL 
Sbjct: 260 FAGLARSSVRHLDLSHGFVFS--LNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQ 317

Query: 161 HLDLSDNYLSGYIPPTLGRLSKLEILNLSSNDLY 194
            L+LS N L          L K+  ++L  N + 
Sbjct: 318 VLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIA 351

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 49.0 bits (117), Expect = 2e-07
 Identities = 23/91 (25%), Positives = 37/91 (40%), Gaps = 3/91 (3%)

Query: 104 FSCFPNLKSFKIHSNYLLSGSIPSEI-AAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHL 162
           F    +LK   +  N +    I  E    +  LQ L L  + L  +       L  + ++
Sbjct: 286 FETLKDLKVLNLAYNKI--NKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYI 343

Query: 163 DLSDNYLSGYIPPTLGRLSKLEILNLSSNDL 193
           DL  N+++     T   L KL+ L+L  N L
Sbjct: 344 DLQKNHIAIIQDQTFKFLEKLQTLDLRDNAL 374

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 48.6 bits (116), Expect = 4e-07
 Identities = 26/112 (23%), Positives = 44/112 (39%), Gaps = 5/112 (4%)

Query: 87  LLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSL- 145
           L+    + +      +     P+L+   ++ N   S S     +    L+ L L  + L 
Sbjct: 405 LIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQ 464

Query: 146 ----TGIIPLEMGRLRNLVHLDLSDNYLSGYIPPTLGRLSKLEILNLSSNDL 193
               T +       L +L  L L+ NYL+   P     L+ L  L+L+SN L
Sbjct: 465 LAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRL 516

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 47.5 bits (113), Expect = 8e-07
 Identities = 27/110 (24%), Positives = 41/110 (37%), Gaps = 6/110 (5%)

Query: 88  LWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSI----PSEIAAVSMLQTLELPSS 143
           L    +  +   G    S  P+L+   +  N L               +S LQ L L  +
Sbjct: 431 LILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHN 490

Query: 144 SLTGIIPLEMGRLRNLVHLDLSDNYLSGYIPPTLGRLSKLEILNLSSNDL 193
            L  + P     L  L  L L+ N L+  +       + LEIL++S N L
Sbjct: 491 YLNSLPPGVFSHLTALRGLSLNSNRLT-VLSHND-LPANLEILDISRNQL 538

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 47.5 bits (113), Expect = 9e-07
 Identities = 15/71 (21%), Positives = 26/71 (36%), Gaps = 4/71 (5%)

Query: 124 SIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLSDNYLSGYIPP-TLGRLSK 182
            +P  +   +  + L L  + +  +       L  L  L+L   Y    I       L  
Sbjct: 18  QVPQVL---NTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPN 74

Query: 183 LEILNLSSNDL 193
           L IL+L S+ +
Sbjct: 75  LRILDLGSSKI 85

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 45.2 bits (107), Expect = 5e-06
 Identities = 19/95 (20%), Positives = 37/95 (38%), Gaps = 4/95 (4%)

Query: 104 FSCFPNLKSFKIHSNYLLSGSIPSEI-AAVSMLQTLELPSSSLTGI-IPLEMGRLRNLVH 161
           F    +L   +++   L    +       +  L  L+L  + +  + +    G+L +L  
Sbjct: 93  FQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKS 152

Query: 162 LDLSDNYLSGYIPPTLGRLS--KLEILNLSSNDLY 194
           +D S N +       L  L    L   +L++N LY
Sbjct: 153 IDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLY 187

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 41.3 bits (97), Expect = 1e-04
 Identities = 19/98 (19%), Positives = 38/98 (38%), Gaps = 8/98 (8%)

Query: 104 FSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIP--LEMGRLRNLVH 161
           F     L    +  N + S  +      ++ L++++  S+ +  +    LE  + + L  
Sbjct: 119 FRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSF 178

Query: 162 LDLSDNYLSGYIPPTLGRLSK------LEILNLSSNDL 193
             L+ N L   +    G+         LEIL++S N  
Sbjct: 179 FSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGW 216

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 53.9 bits (130), Expect = 4e-09
 Identities = 22/104 (21%), Positives = 41/104 (39%), Gaps = 5/104 (4%)

Query: 90  YENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGII 149
             N                +LK   +  N +++  + S    +  L+ L+   S+L  + 
Sbjct: 60  SSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT--MSSNFLGLEQLEHLDFQHSNLKQMS 117

Query: 150 PLEM-GRLRNLVHLDLSDNYLSGYIPP-TLGRLSKLEILNLSSN 191
              +   LRNL++LD+S  +            LS LE+L ++ N
Sbjct: 118 EFSVFLSLRNLIYLDISHTHTR-VAFNGIFNGLSSLEVLKMAGN 160

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 49.6 bits (119), Expect = 1e-07
 Identities = 20/91 (21%), Positives = 37/91 (40%), Gaps = 2/91 (2%)

Query: 104 FSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLD 163
           F+   +L+  K+  N      +P     +  L  L+L    L  + P     L +L  L+
Sbjct: 146 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 205

Query: 164 LSDNYLSGYIPP-TLGRLSKLEILNLSSNDL 193
           +S N     +       L+ L++L+ S N +
Sbjct: 206 MSHNNFF-SLDTFPYKCLNSLQVLDYSLNHI 235

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 46.9 bits (112), Expect = 1e-06
 Identities = 30/136 (22%), Positives = 47/136 (34%), Gaps = 13/136 (9%)

Query: 68  HCKWTGVSCNSAG-----SVIGVSL--LWYENDNITGELGRFKFSCFPNLKSFKIHSNYL 120
            C  T + CNS G     + I  S   L  E++ +   L    F     L    + SN L
Sbjct: 6   SCSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGL 64

Query: 121 LSGSIPSEI-AAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLSDNYLSGYIPP--TL 177
                 S+     + L+ L+L  + +   +      L  L HLD   + L   +      
Sbjct: 65  SFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLK-QMSEFSVF 122

Query: 178 GRLSKLEILNLSSNDL 193
             L  L  L++S    
Sbjct: 123 LSLRNLIYLDISHTHT 138

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 40.8 bits (96), Expect = 1e-04
 Identities = 21/93 (22%), Positives = 34/93 (36%), Gaps = 6/93 (6%)

Query: 104 FSCFPNLKSFKIHSNYLLSGSIPSEI-AAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHL 162
           F+   NL    +    L    +      ++S LQ L +  ++   +       L +L  L
Sbjct: 171 FTELRNLTFLDLSQCQL--EQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVL 228

Query: 163 DLSDNYLSGYIPPTL--GRLSKLEILNLSSNDL 193
           D S N++             S L  LNL+ ND 
Sbjct: 229 DYSLNHIM-TSKKQELQHFPSSLAFLNLTQNDF 260

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 53.8 bits (130), Expect = 5e-09
 Identities = 19/106 (17%), Positives = 41/106 (38%), Gaps = 10/106 (9%)

Query: 88  LWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTG 147
                 N+T  +     +    + + +     +        +  ++ L  +   ++ LT 
Sbjct: 29  TVLGKTNVTDTVS---QTDLDQVTTLQADRLGI---KSIDGVEYLNNLTQINFSNNQLTD 82

Query: 148 IIPLEMGRLRNLVHLDLSDNYLSGYIPPTLGRLSKLEILNLSSNDL 193
           I PL    L  LV + +++N ++   P  L  L+ L  L L +N +
Sbjct: 83  ITPL--KNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQI 124

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 53.8 bits (130), Expect = 6e-09
 Identities = 27/90 (30%), Positives = 45/90 (50%), Gaps = 7/90 (7%)

Query: 104 FSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLD 163
            +    L+   I SN +   S  S +A ++ L++L   ++ ++ I PL  G L NL  L 
Sbjct: 173 LANLTTLERLDISSNKV---SDISVLAKLTNLESLIATNNQISDITPL--GILTNLDELS 227

Query: 164 LSDNYLSGYIPPTLGRLSKLEILNLSSNDL 193
           L+ N L      TL  L+ L  L+L++N +
Sbjct: 228 LNGNQLKD--IGTLASLTNLTDLDLANNQI 255

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 53.0 bits (128), Expect = 9e-09
 Identities = 22/90 (24%), Positives = 38/90 (42%), Gaps = 7/90 (7%)

Query: 104 FSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLD 163
                NL      +N L   +  + +  ++ L  + + ++ +  I PL    L NL  L 
Sbjct: 64  VEYLNNLTQINFSNNQL---TDITPLKNLTKLVDILMNNNQIADITPL--ANLTNLTGLT 118

Query: 164 LSDNYLSGYIPPTLGRLSKLEILNLSSNDL 193
           L +N ++      L  L+ L  L LSSN +
Sbjct: 119 LFNNQITD--IDPLKNLTNLNRLELSSNTI 146

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 53.0 bits (128), Expect = 9e-09
 Identities = 19/90 (21%), Positives = 38/90 (42%), Gaps = 7/90 (7%)

Query: 104 FSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLD 163
            +    L + +++ N L      S I+ +  L  L L  ++++ I P+    L  L  L 
Sbjct: 283 LAGLTALTNLELNENQL---EDISPISNLKNLTYLTLYFNNISDISPV--SSLTKLQRLF 337

Query: 164 LSDNYLSGYIPPTLGRLSKLEILNLSSNDL 193
             +N +S     +L  L+ +  L+   N +
Sbjct: 338 FYNNKVSD--VSSLANLTNINWLSAGHNQI 365

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 51.9 bits (125), Expect = 2e-08
 Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 7/90 (7%)

Query: 104 FSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLD 163
            +   NL+S    +N +   S  + +  ++ L  L L  + L  I  L    L NL  LD
Sbjct: 195 LAKLTNLESLIATNNQI---SDITPLGILTNLDELSLNGNQLKDIGTL--ASLTNLTDLD 249

Query: 164 LSDNYLSGYIPPTLGRLSKLEILNLSSNDL 193
           L++N +S   P  L  L+KL  L L +N +
Sbjct: 250 LANNQISNLAP--LSGLTKLTELKLGANQI 277

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 50.7 bits (122), Expect = 6e-08
 Identities = 17/92 (18%), Positives = 36/92 (39%), Gaps = 7/92 (7%)

Query: 102 FKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVH 161
           F  +         +    +   +       +  + TL+     +  I  +E   L NL  
Sbjct: 18  FTDTALAEKMKTVLGKTNV---TDTVSQTDLDQVTTLQADRLGIKSIDGVE--YLNNLTQ 72

Query: 162 LDLSDNYLSGYIPPTLGRLSKLEILNLSSNDL 193
           ++ S+N L+   P  L  L+KL  + +++N +
Sbjct: 73  INFSNNQLTDITP--LKNLTKLVDILMNNNQI 102

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 50.7 bits (122), Expect = 6e-08
 Identities = 24/90 (26%), Positives = 39/90 (43%), Gaps = 7/90 (7%)

Query: 104 FSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLD 163
                NL    ++ N L        +A+++ L  L+L ++ ++ + PL    L  L  L 
Sbjct: 217 LGILTNLDELSLNGNQL---KDIGTLASLTNLTDLDLANNQISNLAPL--SGLTKLTELK 271

Query: 164 LSDNYLSGYIPPTLGRLSKLEILNLSSNDL 193
           L  N +S   P  L  L+ L  L L+ N L
Sbjct: 272 LGANQISNISP--LAGLTALTNLELNENQL 299

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 50.0 bits (120), Expect = 1e-07
 Identities = 26/90 (28%), Positives = 43/90 (47%), Gaps = 7/90 (7%)

Query: 104 FSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLD 163
            S    L   K+ +N + +    S +A ++ L  LEL  + L  I P+    L+NL +L 
Sbjct: 261 LSGLTKLTELKLGANQISN---ISPLAGLTALTNLELNENQLEDISPI--SNLKNLTYLT 315

Query: 164 LSDNYLSGYIPPTLGRLSKLEILNLSSNDL 193
           L  N +S   P  +  L+KL+ L   +N +
Sbjct: 316 LYFNNISDISP--VSSLTKLQRLFFYNNKV 343

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 48.4 bits (116), Expect = 3e-07
 Identities = 25/90 (27%), Positives = 42/90 (46%), Gaps = 8/90 (8%)

Query: 104 FSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLD 163
                NL   ++ SN +   S  S ++ ++ LQ L    + +T + PL    L  L  LD
Sbjct: 130 LKNLTNLNRLELSSNTI---SDISALSGLTSLQQLSF-GNQVTDLKPL--ANLTTLERLD 183

Query: 164 LSDNYLSGYIPPTLGRLSKLEILNLSSNDL 193
           +S N +S      L +L+ LE L  ++N +
Sbjct: 184 ISSNKVSD--ISVLAKLTNLESLIATNNQI 211

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 48.0 bits (115), Expect = 5e-07
 Identities = 20/90 (22%), Positives = 39/90 (43%), Gaps = 7/90 (7%)

Query: 104 FSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLD 163
            S   NL    ++ N +   S  S +++++ LQ L   ++ ++ +  L    L N+  L 
Sbjct: 305 ISNLKNLTYLTLYFNNI---SDISPVSSLTKLQRLFFYNNKVSDVSSL--ANLTNINWLS 359

Query: 164 LSDNYLSGYIPPTLGRLSKLEILNLSSNDL 193
              N +S   P  L  L+++  L L+    
Sbjct: 360 AGHNQISDLTP--LANLTRITQLGLNDQAW 387

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 41.5 bits (98), Expect = 7e-05
 Identities = 15/90 (16%), Positives = 33/90 (36%), Gaps = 5/90 (5%)

Query: 104 FSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLD 163
            S    L+    ++N +   S  S +A ++ +  L    + ++ + PL    L  +  L 
Sbjct: 327 VSSLTKLQRLFFYNNKV---SDVSSLANLTNINWLSAGHNQISDLTPL--ANLTRITQLG 381

Query: 164 LSDNYLSGYIPPTLGRLSKLEILNLSSNDL 193
           L+D   +         +S    +   +  L
Sbjct: 382 LNDQAWTNAPVNYKANVSIPNTVKNVTGAL 411

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 53.6 bits (128), Expect = 6e-09
 Identities = 25/86 (29%), Positives = 35/86 (40%), Gaps = 3/86 (3%)

Query: 108 PNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLSDN 167
           P   ++                   + ++ L L    LT +  LE  +L  + HLDLS N
Sbjct: 416 PMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCHLE--QLLLVTHLDLSHN 473

Query: 168 YLSGYIPPTLGRLSKLEILNLSSNDL 193
            L   +PP L  L  LE+L  S N L
Sbjct: 474 RLRA-LPPALAALRCLEVLQASDNAL 498

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 48.6 bits (115), Expect = 3e-07
 Identities = 21/88 (23%), Positives = 36/88 (40%), Gaps = 5/88 (5%)

Query: 107 FPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLSD 166
              +    +  N L   ++P  +AA+  L+ L+   ++L  +  +    L  L  L L +
Sbjct: 462 LLLVTHLDLSHNRL--RALPPALAALRCLEVLQASDNALENVDGV--ANLPRLQELLLCN 517

Query: 167 NYLSGY-IPPTLGRLSKLEILNLSSNDL 193
           N L        L    +L +LNL  N L
Sbjct: 518 NRLQQSAAIQPLVSCPRLVLLNLQGNSL 545

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 46.7 bits (110), Expect = 2e-06
 Identities = 19/87 (21%), Positives = 39/87 (44%), Gaps = 6/87 (6%)

Query: 107 FPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLSD 166
           + +++   +    L   ++   +  + ++  L+L  + L  + P  +  LR L  L  SD
Sbjct: 440 YADVRVLHLAHKDL---TVLCHLEQLLLVTHLDLSHNRLRAL-PPALAALRCLEVLQASD 495

Query: 167 NYLSGYIPPTLGRLSKLEILNLSSNDL 193
           N L   +   +  L +L+ L L +N L
Sbjct: 496 NALE-NVDG-VANLPRLQELLLCNNRL 520

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 53.0 bits (127), Expect = 1e-08
 Identities = 19/95 (20%), Positives = 38/95 (40%), Gaps = 4/95 (4%)

Query: 99  LGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRN 158
           +   +      L   K+  N L      + +     L  ++L  + L  I+     +++ 
Sbjct: 223 INVVRGPVNVELTILKLQHNNLTD---TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQR 279

Query: 159 LVHLDLSDNYLSGYIPPTLGRLSKLEILNLSSNDL 193
           L  L +S+N L   +      +  L++L+LS N L
Sbjct: 280 LERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHL 313

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 50.3 bits (120), Expect = 9e-08
 Identities = 18/104 (17%), Positives = 36/104 (34%), Gaps = 5/104 (4%)

Query: 92  NDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEI-AAVSMLQTLELPSSSLTGIIP 150
           +         F+     N K     ++ +    +P+ +  +   ++ L L    +  I  
Sbjct: 35  DMQTQDVYFGFEDITLNNQKIVTFKNSTM--RKLPAALLDSFRQVELLNLNDLQIEEIDT 92

Query: 151 LEMGRLRNLVHLDLSDNYLSGYIPP-TLGRLSKLEILNLSSNDL 193
                   +  L +  N +  Y+PP     +  L +L L  NDL
Sbjct: 93  YAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDL 135

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 49.5 bits (118), Expect = 2e-07
 Identities = 19/92 (20%), Positives = 37/92 (40%), Gaps = 5/92 (5%)

Query: 104 FSCFPNLKSFKIHSNYLLSGSIPSEI-AAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHL 162
              F  ++   ++   +    I +   A    +Q L +  +++  + P     +  L  L
Sbjct: 71  LDSFRQVELLNLNDLQI--EEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128

Query: 163 DLSDNYLSGYIPP-TLGRLSKLEILNLSSNDL 193
            L  N LS  +P        KL  L++S+N+L
Sbjct: 129 VLERNDLS-SLPRGIFHNTPKLTTLSMSNNNL 159

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 47.6 bits (113), Expect = 7e-07
 Identities = 19/90 (21%), Positives = 33/90 (36%), Gaps = 6/90 (6%)

Query: 104 FSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLD 163
           F     L+   I +N L   ++      +  L+ L+L  + L   +     +   L +L 
Sbjct: 274 FVKMQRLERLYISNNRL--VALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLY 330

Query: 164 LSDNYLSGYIPPTLGRLSKLEILNLSSNDL 193
           L  N +   +         L+ L LS ND 
Sbjct: 331 LDHNSIV-TLKL--STHHTLKNLTLSHNDW 357

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 45.7 bits (108), Expect = 3e-06
 Identities = 22/92 (23%), Positives = 37/92 (40%), Gaps = 5/92 (5%)

Query: 104 FSCFPNLKSFKIHSNYLLSGSIPSEI-AAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHL 162
           F+    ++   +  N +    +P  +   V +L  L L  + L+ +          L  L
Sbjct: 95  FAYAHTIQKLYMGFNAI--RYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTL 152

Query: 163 DLSDNYLSGYIPP-TLGRLSKLEILNLSSNDL 193
            +S+N L   I   T    + L+ L LSSN L
Sbjct: 153 SMSNNNLE-RIEDDTFQATTSLQNLQLSSNRL 183

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 44.9 bits (106), Expect = 5e-06
 Identities = 11/71 (15%), Positives = 26/71 (36%), Gaps = 2/71 (2%)

Query: 124 SIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLSDNYLSGYIPP-TLGRLSK 182
            I S +    +   + +   +       E   L N   +   ++ +   +P   L    +
Sbjct: 18  CIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQ 76

Query: 183 LEILNLSSNDL 193
           +E+LNL+   +
Sbjct: 77  VELLNLNDLQI 87

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 44.1 bits (104), Expect = 1e-05
 Identities = 24/115 (20%), Positives = 39/115 (33%), Gaps = 27/115 (23%)

Query: 99  LGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTL--------ELPSSSLTGIIP 150
           L     S  P+L    +  N L      S +A    ++ L         +       +  
Sbjct: 183 LTHVDLSLIPSLFHANVSYNLL------STLAIPIAVEELDASHNSINVVRGPVNVELTI 236

Query: 151 LEMGR-----------LRNLVHLDLSDNYLSGYIPP-TLGRLSKLEILNLSSNDL 193
           L++                LV +DLS N L   I      ++ +LE L +S+N L
Sbjct: 237 LKLQHNNLTDTAWLLNYPGLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNNRL 290

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 43.4 bits (102), Expect = 2e-05
 Identities = 24/91 (26%), Positives = 37/91 (40%), Gaps = 6/91 (6%)

Query: 104 FSCFPNLKSFKIHSNYLLSGSIPSEI-AAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHL 162
           F   P L    +  N L   S+P  I      L TL + +++L  I         +L +L
Sbjct: 119 FQNVPLLTVLVLERNDL--SSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNL 176

Query: 163 DLSDNYLSGYIPPTLGRLSKLEILNLSSNDL 193
            LS N L+ ++      +  L   N+S N L
Sbjct: 177 QLSSNRLT-HVDL--SLIPSLFHANVSYNLL 204

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 52.0 bits (125), Expect = 2e-08
 Identities = 21/91 (23%), Positives = 36/91 (39%), Gaps = 5/91 (5%)

Query: 104 FSCFPNLKSFKIHSNYLLSGSIPSEI-AAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHL 162
              +P L    +  N L    I       +  L+ L + ++ L   + L    +  L  L
Sbjct: 244 LLNYPGLVEVDLSYNEL--EKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVL 300

Query: 163 DLSDNYLSGYIPPTLGRLSKLEILNLSSNDL 193
           DLS N+L  ++     +  +LE L L  N +
Sbjct: 301 DLSHNHLL-HVERNQPQFDRLENLYLDHNSI 330

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 50.4 bits (121), Expect = 6e-08
 Identities = 19/87 (21%), Positives = 36/87 (41%), Gaps = 4/87 (4%)

Query: 107 FPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLSD 166
              L   K+  N L      + +     L  ++L  + L  I+     +++ L  L +S+
Sbjct: 225 NVELTILKLQHNNLTD---TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISN 281

Query: 167 NYLSGYIPPTLGRLSKLEILNLSSNDL 193
           N L   +      +  L++L+LS N L
Sbjct: 282 NRLV-ALNLYGQPIPTLKVLDLSHNHL 307

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 49.7 bits (119), Expect = 1e-07
 Identities = 18/91 (19%), Positives = 35/91 (38%), Gaps = 3/91 (3%)

Query: 104 FSCFPNLKSFKIHSNYLLSGSIPSEI-AAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHL 162
              F  ++   ++   +    I +   A    +Q L +  +++  + P     +  L  L
Sbjct: 65  LDSFRQVELLNLNDLQI--EEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122

Query: 163 DLSDNYLSGYIPPTLGRLSKLEILNLSSNDL 193
            L  N LS           KL  L++S+N+L
Sbjct: 123 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNL 153

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 49.7 bits (119), Expect = 1e-07
 Identities = 18/104 (17%), Positives = 36/104 (34%), Gaps = 5/104 (4%)

Query: 92  NDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEI-AAVSMLQTLELPSSSLTGIIP 150
           +         F+     N K     ++ +    +P+ +  +   ++ L L    +  I  
Sbjct: 29  DMQTQDVYFGFEDITLNNQKIVTFKNSTM--RKLPAALLDSFRQVELLNLNDLQIEEIDT 86

Query: 151 LEMGRLRNLVHLDLSDNYLSGYIPP-TLGRLSKLEILNLSSNDL 193
                   +  L +  N +  Y+PP     +  L +L L  NDL
Sbjct: 87  YAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDL 129

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 48.1 bits (115), Expect = 4e-07
 Identities = 19/90 (21%), Positives = 33/90 (36%), Gaps = 6/90 (6%)

Query: 104 FSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLD 163
           F     L+   I +N L   ++      +  L+ L+L  + L   +     +   L +L 
Sbjct: 268 FVKMQRLERLYISNNRL--VALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLY 324

Query: 164 LSDNYLSGYIPPTLGRLSKLEILNLSSNDL 193
           L  N +   +         L+ L LS ND 
Sbjct: 325 LDHNSIV-TLKL--STHHTLKNLTLSHNDW 351

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 45.0 bits (107), Expect = 5e-06
 Identities = 22/92 (23%), Positives = 37/92 (40%), Gaps = 5/92 (5%)

Query: 104 FSCFPNLKSFKIHSNYLLSGSIPSEI-AAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHL 162
           F+    ++   +  N +    +P  +   V +L  L L  + L+ +          L  L
Sbjct: 89  FAYAHTIQKLYMGFNAI--RYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTL 146

Query: 163 DLSDNYLSGYIPP-TLGRLSKLEILNLSSNDL 193
            +S+N L   I   T    + L+ L LSSN L
Sbjct: 147 SMSNNNLE-RIEDDTFQATTSLQNLQLSSNRL 177

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 44.6 bits (106), Expect = 5e-06
 Identities = 11/71 (15%), Positives = 26/71 (36%), Gaps = 2/71 (2%)

Query: 124 SIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLSDNYLSGYIPP-TLGRLSK 182
            I S +    +   + +   +       E   L N   +   ++ +   +P   L    +
Sbjct: 12  CIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQ 70

Query: 183 LEILNLSSNDL 193
           +E+LNL+   +
Sbjct: 71  VELLNLNDLQI 81

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 43.5 bits (103), Expect = 1e-05
 Identities = 24/116 (20%), Positives = 39/116 (33%), Gaps = 27/116 (23%)

Query: 98  ELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTL--------ELPSSSLTGII 149
            L     S  P+L    +  N L      S +A    ++ L         +       + 
Sbjct: 176 RLTHVDLSLIPSLFHANVSYNLL------STLAIPIAVEELDASHNSINVVRGPVNVELT 229

Query: 150 PLEMGR-----------LRNLVHLDLSDNYLSGYIPP-TLGRLSKLEILNLSSNDL 193
            L++                LV +DLS N L   I      ++ +LE L +S+N L
Sbjct: 230 ILKLQHNNLTDTAWLLNYPGLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNNRL 284

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 43.5 bits (103), Expect = 1e-05
 Identities = 24/91 (26%), Positives = 37/91 (40%), Gaps = 6/91 (6%)

Query: 104 FSCFPNLKSFKIHSNYLLSGSIPSEI-AAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHL 162
           F   P L    +  N L   S+P  I      L TL + +++L  I         +L +L
Sbjct: 113 FQNVPLLTVLVLERNDL--SSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNL 170

Query: 163 DLSDNYLSGYIPPTLGRLSKLEILNLSSNDL 193
            LS N L+ ++      +  L   N+S N L
Sbjct: 171 QLSSNRLT-HVDL--SLIPSLFHANVSYNLL 198

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 51.8 bits (124), Expect = 2e-08
 Identities = 19/103 (18%), Positives = 40/103 (38%), Gaps = 9/103 (8%)

Query: 91  ENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIP 150
           E+      + + +           +  + L   ++P  +   + + TL +P ++LT +  
Sbjct: 23  ESRGRAAVVQKMRACLNNGNAVLNVGESGL--TTLPDCLP--AHITTLVIPDNNLTSLPA 78

Query: 151 LEMGRLRNLVHLDLSDNYLSGYIPPTLGRLSKLEILNLSSNDL 193
           L       L  L++S N L+  +P     L +L I +     L
Sbjct: 79  L----PPELRTLEVSGNQLT-SLPVLPPGLLELSIFSNPLTHL 116

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 49.9 bits (119), Expect = 1e-07
 Identities = 24/87 (27%), Positives = 35/87 (40%), Gaps = 10/87 (11%)

Query: 107 FPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLSD 166
            P L+   +  N L   S+P+     S L  L   ++ LT + P+       L  L +SD
Sbjct: 140 PPGLQELSVSDNQL--ASLPALP---SELCKLWAYNNQLTSL-PMLPS---GLQELSVSD 190

Query: 167 NYLSGYIPPTLGRLSKLEILNLSSNDL 193
           N L+  +P     L KL   N     L
Sbjct: 191 NQLA-SLPTLPSELYKLWAYNNRLTSL 216

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 47.6 bits (113), Expect = 7e-07
 Identities = 22/87 (25%), Positives = 34/87 (39%), Gaps = 13/87 (14%)

Query: 107 FPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLSD 166
             ++ +  I  N L S  +P+       L+TLE+  + LT  +P+    L  L       
Sbjct: 60  PAHITTLVIPDNNLTS--LPALPPE---LRTLEVSGNQLT-SLPVLPPGLLELSIFSNPL 113

Query: 167 NYLSGYIPPTLGRLSKLEILNLSSNDL 193
            +L     P L   S L  L +  N L
Sbjct: 114 THL-----PAL--PSGLCKLWIFGNQL 133

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 45.3 bits (107), Expect = 5e-06
 Identities = 19/89 (21%), Positives = 34/89 (38%), Gaps = 13/89 (14%)

Query: 105 SCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDL 164
           +  P L++ ++  N L   S+P     +  L     P + L  +          L  L +
Sbjct: 78  ALPPELRTLEVSGNQL--TSLPVLPPGLLELSIFSNPLTHLPALPS-------GLCKLWI 128

Query: 165 SDNYLSGYIPPTLGRLSKLEILNLSSNDL 193
             N L+  +P        L+ L++S N L
Sbjct: 129 FGNQLT-SLPVLPP---GLQELSVSDNQL 153

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 44.9 bits (106), Expect = 6e-06
 Identities = 23/106 (21%), Positives = 39/106 (36%), Gaps = 28/106 (26%)

Query: 107 FPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLSD 166
              L     ++N L   S+P+  +    L+ L +  + LT + P+    L+ L    +S 
Sbjct: 200 PSELYKLWAYNNRL--TSLPALPSG---LKELIVSGNRLTSL-PVLPSELKEL---MVSG 250

Query: 167 NYLSG-------------------YIPPTLGRLSKLEILNLSSNDL 193
           N L+                     +P +L  LS    +NL  N L
Sbjct: 251 NRLTSLPMLPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPL 296

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 43.0 bits (101), Expect = 2e-05
 Identities = 20/85 (23%), Positives = 34/85 (40%), Gaps = 9/85 (10%)

Query: 109 NLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLSDNY 168
            LK   +  N L   S+P   +    L +L +  + LT + P  +  L +   ++L  N 
Sbjct: 242 ELKELMVSGNRL--TSLPMLPSG---LLSLSVYRNQLTRL-PESLIHLSSETTVNLEGNP 295

Query: 169 LSGYIPPTLGRLSKLEILNLSSNDL 193
           LS     TL  L ++      S  +
Sbjct: 296 LS---ERTLQALREITSAPGYSGPI 317

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 42.6 bits (100), Expect = 4e-05
 Identities = 23/106 (21%), Positives = 36/106 (33%), Gaps = 27/106 (25%)

Query: 105 SCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLR------- 157
           +    L     ++N L   S+P      S LQ L +  + L   +P     L        
Sbjct: 158 ALPSELCKLWAYNNQL--TSLPMLP---SGLQELSVSDNQLA-SLPTLPSELYKLWAYNN 211

Query: 158 ----------NLVHLDLSDNYLSGYIPPTLGRLSKLEILNLSSNDL 193
                      L  L +S N L+  +P       +L+ L +S N L
Sbjct: 212 RLTSLPALPSGLKELIVSGNRLT-SLPVLPS---ELKELMVSGNRL 253

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 49.6 bits (119), Expect = 6e-08
 Identities = 19/88 (21%), Positives = 38/88 (43%), Gaps = 3/88 (3%)

Query: 104 FSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLD 163
                N+K   I++ +    +  + I+ +S L+ L +    +T      +  L +L  LD
Sbjct: 62  IEYAHNIKDLTINNIHA---TNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118

Query: 164 LSDNYLSGYIPPTLGRLSKLEILNLSSN 191
           +S +     I   +  L K+  ++LS N
Sbjct: 119 ISHSAHDDSILTKINTLPKVNSIDLSYN 146

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 47.6 bits (114), Expect = 3e-07
 Identities = 20/88 (22%), Positives = 39/88 (44%), Gaps = 2/88 (2%)

Query: 104 FSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLD 163
            S   NL+  +I    + +      ++ ++ L  L++  S+    I  ++  L  +  +D
Sbjct: 84  ISGLSNLERLRIMGKDV-TSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSID 142

Query: 164 LSDNYLSGYIPPTLGRLSKLEILNLSSN 191
           LS N     I P L  L +L+ LN+  +
Sbjct: 143 LSYNGAITDIMP-LKTLPELKSLNIQFD 169

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 43.8 bits (104), Expect = 7e-06
 Identities = 13/59 (22%), Positives = 26/59 (44%), Gaps = 2/59 (3%)

Query: 135 LQTLELPSSSLTGIIPLEMGRLRNLVHLDLSDNYLSGYIPPTLGRLSKLEILNLSSNDL 193
           ++ L + +   T   P+    L NL  L +    ++    P L  L+ L +L++S +  
Sbjct: 68  IKDLTINNIHATNYNPISG--LSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAH 124

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 41.9 bits (99), Expect = 3e-05
 Identities = 19/89 (21%), Positives = 37/89 (41%), Gaps = 6/89 (6%)

Query: 104 FSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPS-SSLTGIIPLEMGRLRNLVHL 162
            S   +L    I  +     SI ++I  +  + +++L    ++T I+PL+   L  L  L
Sbjct: 108 LSGLTSLTLLDISHSAH-DDSILTKINTLPKVNSIDLSYNGAITDIMPLK--TLPELKSL 164

Query: 163 DLSDNYLSGYIPPTLGRLSKLEILNLSSN 191
           ++  + +  Y    +    KL  L   S 
Sbjct: 165 NIQFDGVHDYRG--IEDFPKLNQLYAFSQ 191

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 50.9 bits (122), Expect = 6e-08
 Identities = 18/92 (19%), Positives = 32/92 (34%), Gaps = 5/92 (5%)

Query: 104 FSCFPNLKSFKIHSNYLLSGSIPSEI-AAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHL 162
            S    L   ++    +   +I       +  L+ LE+        +        NL  L
Sbjct: 172 LSHLHGLIVLRLRHLNI--NAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSL 229

Query: 163 DLSDNYLSGYIPP-TLGRLSKLEILNLSSNDL 193
            ++   L+  +P   +  L  L  LNLS N +
Sbjct: 230 SITHCNLT-AVPYLAVRHLVYLRFLNLSYNPI 260

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 48.6 bits (116), Expect = 3e-07
 Identities = 28/108 (25%), Positives = 49/108 (45%), Gaps = 6/108 (5%)

Query: 88  LWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEI-AAVSMLQTLELPSSSLT 146
           L    + I   L + +F+ FP+L+  +++ N +   ++       +  L+TL L S+ L 
Sbjct: 37  LDLGKNRIK-TLNQDEFASFPHLEELELNENIV--SAVEPGAFNNLFNLRTLGLRSNRLK 93

Query: 147 GIIPLEMGRLRNLVHLDLSDNYLSGYIPP-TLGRLSKLEILNLSSNDL 193
            I       L NL  LD+S+N +   +       L  L+ L +  NDL
Sbjct: 94  LIPLGVFTGLSNLTKLDISENKIV-ILLDYMFQDLYNLKSLEVGDNDL 140

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 48.2 bits (115), Expect = 4e-07
 Identities = 26/107 (24%), Positives = 42/107 (39%), Gaps = 4/107 (3%)

Query: 88  LWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTG 147
           L   + NI   +  + F     LK  +I     L  ++         L +L +   +LT 
Sbjct: 181 LRLRHLNIN-AIRDYSFKRLYRLKVLEISHWPYLD-TMTPNCLYGLNLTSLSITHCNLTA 238

Query: 148 IIPLEMGRLRNLVHLDLSDNYLSGYIPP-TLGRLSKLEILNLSSNDL 193
           +  L +  L  L  L+LS N +S  I    L  L +L+ + L    L
Sbjct: 239 VPYLAVRHLVYLRFLNLSYNPIS-TIEGSMLHELLRLQEIQLVGGQL 284

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 48.2 bits (115), Expect = 4e-07
 Identities = 20/90 (22%), Positives = 37/90 (41%), Gaps = 6/90 (6%)

Query: 105 SCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDL 164
            C    ++   H    ++  +P  I   +  + L+L  + +  +   E     +L  L+L
Sbjct: 8   ECSAQDRAVLCHRKRFVA--VPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELEL 63

Query: 165 SDNYLSGYIPP-TLGRLSKLEILNLSSNDL 193
           ++N +S  + P     L  L  L L SN L
Sbjct: 64  NENIVS-AVEPGAFNNLFNLRTLGLRSNRL 92

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 47.8 bits (114), Expect = 5e-07
 Identities = 21/91 (23%), Positives = 36/91 (39%), Gaps = 3/91 (3%)

Query: 104 FSCFPNLKSFKIHSNYLLSGSIPSEI-AAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHL 162
           FS   +L+   +    L   SIP+E  + +  L  L L   ++  I      RL  L  L
Sbjct: 148 FSGLNSLEQLTLEKCNL--TSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVL 205

Query: 163 DLSDNYLSGYIPPTLGRLSKLEILNLSSNDL 193
           ++S       + P       L  L+++  +L
Sbjct: 206 EISHWPYLDTMTPNCLYGLNLTSLSITHCNL 236

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 45.5 bits (108), Expect = 3e-06
 Identities = 22/93 (23%), Positives = 36/93 (38%), Gaps = 5/93 (5%)

Query: 104 FSCFPNLKSFKIHSNYLLSGSIPSEI-AAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHL 162
           F+   NL    I  N +    +   +   +  L++LE+  + L  I       L +L  L
Sbjct: 100 FTGLSNLTKLDISENKI--VILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQL 157

Query: 163 DLSDNYLSGYIPP-TLGRLSKLEILNLSSNDLY 194
            L    L+  IP   L  L  L +L L   ++ 
Sbjct: 158 TLEKCNLT-SIPTEALSHLHGLIVLRLRHLNIN 189

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 43.2 bits (102), Expect = 2e-05
 Identities = 21/92 (22%), Positives = 35/92 (38%), Gaps = 5/92 (5%)

Query: 104 FSCFPNLKSFKIHSNYLLSGSIPSEI-AAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHL 162
                 L+   +  N +   +I   +   +  LQ ++L    L  + P     L  L  L
Sbjct: 244 VRHLVYLRFLNLSYNPI--STIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVL 301

Query: 163 DLSDNYLSGYIPP-TLGRLSKLEILNLSSNDL 193
           ++S N L+  +       +  LE L L SN L
Sbjct: 302 NVSGNQLT-TLEESVFHSVGNLETLILDSNPL 332

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 50.3 bits (120), Expect = 7e-08
 Identities = 24/97 (24%), Positives = 31/97 (31%), Gaps = 7/97 (7%)

Query: 104 FSCFPNLKSFKIHSNYLLSGSIPSEIA---AVSMLQTLELPS---SSLTGIIPLEMGRLR 157
              FP L +  +  N  L                LQ L L +    + +G+         
Sbjct: 169 VRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARV 228

Query: 158 NLVHLDLSDNYLSGYIPPTL-GRLSKLEILNLSSNDL 193
            L  LDLS N L            S+L  LNLS   L
Sbjct: 229 QLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGL 265

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 48.7 bits (116), Expect = 2e-07
 Identities = 35/132 (26%), Positives = 50/132 (37%), Gaps = 9/132 (6%)

Query: 68  HCKWTGVSCNSAGSVIGVSLLWYENDNITGELGRFKFSC---FPNLKSFKIHSNYL--LS 122
                  SC        +S L   ++   GE G     C   FP L+   + +  +   S
Sbjct: 158 QAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPS 217

Query: 123 GSIPSEIAAVSMLQTLELPSSSLTGIIPLEM-GRLRNLVHLDLSDNYLSGYIPPTLGRLS 181
           G   +  AA   LQ L+L  +SL              L  L+LS   L   +P  L   +
Sbjct: 218 GVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQ-VPKGL--PA 274

Query: 182 KLEILNLSSNDL 193
           KL +L+LS N L
Sbjct: 275 KLSVLDLSYNRL 286

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 45.7 bits (108), Expect = 3e-06
 Identities = 24/103 (23%), Positives = 35/103 (33%), Gaps = 8/103 (7%)

Query: 98  ELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLE----M 153
            L   +    P LK   I   + L+ S    +     L TL+L  +   G   L      
Sbjct: 139 WLAELQQWLKPGLKVLSIAQAHSLNFSCEQ-VRVFPALSTLDLSDNPELGERGLISALCP 197

Query: 154 GRLRNLVHLDLSDNY---LSGYIPPTLGRLSKLEILNLSSNDL 193
            +   L  L L +      SG          +L+ L+LS N L
Sbjct: 198 LKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSL 240

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 44.5 bits (105), Expect = 6e-06
 Identities = 16/94 (17%), Positives = 33/94 (35%), Gaps = 7/94 (7%)

Query: 107 FPNLKSFKIHSNYLLS-GSIPSEIAAVSM--LQTLELPSSSLTGIIPLEMGRLRNLVHLD 163
            P+L    + +    +  +  +E+       L+ L +  +        ++     L  LD
Sbjct: 120 GPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLD 179

Query: 164 LSDNYLSGYIPPT----LGRLSKLEILNLSSNDL 193
           LSDN   G           +   L++L L +  +
Sbjct: 180 LSDNPELGERGLISALCPLKFPTLQVLALRNAGM 213

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 49.7 bits (119), Expect = 1e-07
 Identities = 22/91 (24%), Positives = 31/91 (34%), Gaps = 6/91 (6%)

Query: 104 FSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLD 163
            SC             L    +P  I+     + L L  + +  I       LR+L  L 
Sbjct: 39  CSCSNQFSKVICVRKNLRE--VPDGISTN--TRLLNLHENQIQIIKVNSFKHLRHLEILQ 94

Query: 164 LSDNYLSGYIPP-TLGRLSKLEILNLSSNDL 193
           LS N++   I       L+ L  L L  N L
Sbjct: 95  LSRNHIR-TIEIGAFNGLANLNTLELFDNRL 124

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 45.9 bits (109), Expect = 3e-06
 Identities = 22/91 (24%), Positives = 37/91 (40%), Gaps = 5/91 (5%)

Query: 104 FSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLD 163
           F    NL+   +    L    IP+ +  +  L  L+L  + L+ I P     L +L  L 
Sbjct: 181 FEGLSNLRYLNLAMCNLRE--IPN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLW 237

Query: 164 LSDNYLSGYIPP-TLGRLSKLEILNLSSNDL 193
           +  + +   I       L  L  +NL+ N+L
Sbjct: 238 MIQSQIQ-VIERNAFDNLQSLVEINLAHNNL 267

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 44.4 bits (105), Expect = 8e-06
 Identities = 28/127 (22%), Positives = 45/127 (35%), Gaps = 13/127 (10%)

Query: 74  VSCNSAG-SVI------GVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIP 126
           V C       +         LL    + I   +    F    +L+  ++  N++   +I 
Sbjct: 48  VICVRKNLREVPDGISTNTRLLNLHENQIQ-IIKVNSFKHLRHLEILQLSRNHI--RTIE 104

Query: 127 SEI-AAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLSDNYLSGYIPP-TLGRLSKLE 184
                 ++ L TLEL  + LT I       L  L  L L +N +   IP     R+  L 
Sbjct: 105 IGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLR 163

Query: 185 ILNLSSN 191
            L+L   
Sbjct: 164 RLDLGEL 170

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 43.2 bits (102), Expect = 2e-05
 Identities = 20/89 (22%), Positives = 35/89 (39%), Gaps = 3/89 (3%)

Query: 104 FSCFPNLKSFKIHSNYLLSGSIPSEI-AAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHL 162
            +    L    +  N+L   +I       +  LQ L +  S +  I       L++LV +
Sbjct: 203 LTPLIKLDELDLSGNHL--SAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEI 260

Query: 163 DLSDNYLSGYIPPTLGRLSKLEILNLSSN 191
           +L+ N L+         L  LE ++L  N
Sbjct: 261 NLAHNNLTLLPHDLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 41.3 bits (97), Expect = 1e-04
 Identities = 26/92 (28%), Positives = 42/92 (45%), Gaps = 4/92 (4%)

Query: 104 FSCFPNLKSFKIHSNYLLSGSIPSEI-AAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHL 162
           F+   NL + ++  N L   +IP+     +S L+ L L ++ +  I      R+ +L  L
Sbjct: 108 FNGLANLNTLELFDNRL--TTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRL 165

Query: 163 DLSDNYLSGYIPP-TLGRLSKLEILNLSSNDL 193
           DL +     YI       LS L  LNL+  +L
Sbjct: 166 DLGELKRLSYISEGAFEGLSNLRYLNLAMCNL 197

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 49.6 bits (118), Expect = 2e-07
 Identities = 23/87 (26%), Positives = 39/87 (44%), Gaps = 13/87 (14%)

Query: 107 FPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLSD 166
            P +   +I  N L   S+P   A+   L+ L+   + L+  +P       +L HLD+ +
Sbjct: 79  PPQITVLEITQNAL--ISLPELPAS---LEYLDACDNRLS-TLPELPA---SLKHLDVDN 129

Query: 167 NYLSGYIPPTLGRLSKLEILNLSSNDL 193
           N L+  +P        LE +N  +N L
Sbjct: 130 NQLT-MLPELPA---LLEYINADNNQL 152

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 44.6 bits (105), Expect = 7e-06
 Identities = 13/72 (18%), Positives = 28/72 (38%), Gaps = 5/72 (6%)

Query: 124 SIPSEI-AAVSMLQTLELPSSSLTGIIP-LEMGRLRNLVHLDLSDNYLSGYIPPTLGRLS 181
              ++  +A    +   LP  +    +  L+   +     L L+   LS  +P  L    
Sbjct: 24  GTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQLNRLNLSS-LPDNLP--P 80

Query: 182 KLEILNLSSNDL 193
           ++ +L ++ N L
Sbjct: 81  QITVLEITQNAL 92

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 43.4 bits (102), Expect = 2e-05
 Identities = 20/87 (22%), Positives = 40/87 (45%), Gaps = 13/87 (14%)

Query: 107 FPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLSD 166
             +LK   + +N L    +P      ++L+ +   ++ LT +  L      +L  L + +
Sbjct: 119 PASLKHLDVDNNQL--TMLPELP---ALLEYINADNNQLTMLPEL----PTSLEVLSVRN 169

Query: 167 NYLSGYIPPTLGRLSKLEILNLSSNDL 193
           N L+ ++P        LE L++S+N L
Sbjct: 170 NQLT-FLPELPES---LEALDVSTNLL 192

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 41.1 bits (96), Expect = 1e-04
 Identities = 16/93 (17%), Positives = 32/93 (34%), Gaps = 7/93 (7%)

Query: 105 SCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQT----LELPSSSLTGIIPLEMGRLRNLV 160
               +L++  + +N L   S+P+        +          + +T I P  +  L    
Sbjct: 177 ELPESLEALDVSTNLL--ESLPAVPVRNHHSEETEIFFRCRENRITHI-PENILSLDPTC 233

Query: 161 HLDLSDNYLSGYIPPTLGRLSKLEILNLSSNDL 193
            + L DN LS  I  +L + +     +      
Sbjct: 234 TIILEDNPLSSRIRESLSQQTAQPDYHGPRIYF 266

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 49.4 bits (118), Expect = 2e-07
 Identities = 20/90 (22%), Positives = 29/90 (32%), Gaps = 6/90 (6%)

Query: 105 SCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDL 164
           SC             L    +P  I +    + L L  +++  I       L +L  L L
Sbjct: 51  SCSNQFSKVVCTRRGLSE--VPQGIPSN--TRYLNLMENNIQMIQADTFRHLHHLEVLQL 106

Query: 165 SDNYLSGYIPP-TLGRLSKLEILNLSSNDL 193
             N +   I       L+ L  L L  N L
Sbjct: 107 GRNSIR-QIEVGAFNGLASLNTLELFDNWL 135

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 45.9 bits (109), Expect = 2e-06
 Identities = 22/91 (24%), Positives = 39/91 (42%), Gaps = 5/91 (5%)

Query: 104 FSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLD 163
           F    NLK   +    +    +P+ +  +  L+ LE+  +    I P     L +L  L 
Sbjct: 192 FEGLFNLKYLNLGMCNIKD--MPN-LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLW 248

Query: 164 LSDNYLSGYIPP-TLGRLSKLEILNLSSNDL 193
           + ++ +S  I       L+ L  LNL+ N+L
Sbjct: 249 VMNSQVS-LIERNAFDGLASLVELNLAHNNL 278

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 43.6 bits (103), Expect = 1e-05
 Identities = 22/90 (24%), Positives = 38/90 (42%), Gaps = 5/90 (5%)

Query: 104 FSCFPNLKSFKIHSNYLLSGSIPSE-IAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHL 162
            +    L+  ++  N+     I       +S L+ L + +S ++ I       L +LV L
Sbjct: 214 LTPLVGLEELEMSGNHF--PEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVEL 271

Query: 163 DLSDNYLSGYIPP-TLGRLSKLEILNLSSN 191
           +L+ N LS  +P      L  L  L+L  N
Sbjct: 272 NLAHNNLS-SLPHDLFTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 43.6 bits (103), Expect = 2e-05
 Identities = 31/135 (22%), Positives = 46/135 (34%), Gaps = 15/135 (11%)

Query: 68  HCKWTG--VSCNSAG-SVI------GVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSN 118
            C      V C   G S +          L    +NI   +    F    +L+  ++  N
Sbjct: 51  SCSNQFSKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQ-MIQADTFRHLHHLEVLQLGRN 109

Query: 119 YLLSGSIPSEI-AAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLSDNYLSGYIPP-T 176
            +    I       ++ L TLEL  + LT I       L  L  L L +N +   IP   
Sbjct: 110 SI--RQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIE-SIPSYA 166

Query: 177 LGRLSKLEILNLSSN 191
             R+  L  L+L   
Sbjct: 167 FNRVPSLMRLDLGEL 181

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 43.6 bits (103), Expect = 2e-05
 Identities = 24/92 (26%), Positives = 42/92 (45%), Gaps = 4/92 (4%)

Query: 104 FSCFPNLKSFKIHSNYLLSGSIPSEI-AAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHL 162
           F+   +L + ++  N+L    IPS     +S L+ L L ++ +  I      R+ +L+ L
Sbjct: 119 FNGLASLNTLELFDNWL--TVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRL 176

Query: 163 DLSDNYLSGYIPP-TLGRLSKLEILNLSSNDL 193
           DL +     YI       L  L+ LNL   ++
Sbjct: 177 DLGELKKLEYISEGAFEGLFNLKYLNLGMCNI 208

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 43.2 bits (102), Expect = 2e-05
 Identities = 24/89 (26%), Positives = 40/89 (44%), Gaps = 5/89 (5%)

Query: 107 FPNLKSFKIHSNYLLSGSIPSEI-AAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLS 165
             N +   +  N +    I ++    +  L+ L+L  +S+  I       L +L  L+L 
Sbjct: 74  PSNTRYLNLMENNI--QMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF 131

Query: 166 DNYLSGYIPP-TLGRLSKLEILNLSSNDL 193
           DN+L+  IP      LSKL  L L +N +
Sbjct: 132 DNWLT-VIPSGAFEYLSKLRELWLRNNPI 159

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 48.8 bits (117), Expect = 2e-07
 Identities = 22/111 (19%), Positives = 43/111 (38%), Gaps = 21/111 (18%)

Query: 98  ELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLR 157
            + R +          ++++  L   S+P        L++L    +SLT  +P     L+
Sbjct: 61  AVSRLRDCLDRQAHELELNNLGL--SSLPELP---PHLESLVASCNSLT-ELPELPQSLK 114

Query: 158 NLVHLDLSDNYLSGYIP---------------PTLGRLSKLEILNLSSNDL 193
           +L+  + +   LS   P               P L   S L+I+++ +N L
Sbjct: 115 SLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSL 165

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 48.8 bits (117), Expect = 2e-07
 Identities = 18/89 (20%), Positives = 32/89 (35%), Gaps = 9/89 (10%)

Query: 105 SCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDL 164
              P+L+     +N L       E+  +  L  +   ++SL  +  L      +L  +  
Sbjct: 170 DLPPSLEFIAAGNNQL---EELPELQNLPFLTAIYADNNSLKKLPDL----PLSLESIVA 222

Query: 165 SDNYLSGYIPPTLGRLSKLEILNLSSNDL 193
            +N L     P L  L  L  +   +N L
Sbjct: 223 GNNILE--ELPELQNLPFLTTIYADNNLL 249

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 46.9 bits (112), Expect = 1e-06
 Identities = 20/104 (19%), Positives = 35/104 (33%), Gaps = 21/104 (20%)

Query: 105 SCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPL------------- 151
              P+L+S     N L    +P    ++  L        +L+ + PL             
Sbjct: 88  ELPPHLESLVASCNSL--TELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEK 145

Query: 152 --EMGRLRNLVHLDLSDNYLSGYIPPTLGRLSKLEILNLSSNDL 193
             E+     L  +D+ +N L   +P        LE +   +N L
Sbjct: 146 LPELQNSSFLKIIDVDNNSLK-KLPDLPP---SLEFIAAGNNQL 185

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 45.0 bits (107), Expect = 5e-06
 Identities = 22/98 (22%), Positives = 29/98 (29%), Gaps = 19/98 (19%)

Query: 109 NLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLR----------- 157
            L+    HS+ L    +P E   V          S      P   G  R           
Sbjct: 12  FLQEPLRHSSNL--TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCL 69

Query: 158 --NLVHLDLSDNYLSGYIPPTLGRLSKLEILNLSSNDL 193
                 L+L++  LS  +P        LE L  S N L
Sbjct: 70  DRQAHELELNNLGLS-SLPELPP---HLESLVASCNSL 103

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 45.0 bits (107), Expect = 5e-06
 Identities = 18/90 (20%), Positives = 33/90 (36%), Gaps = 8/90 (8%)

Query: 104 FSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLD 163
               P L +    +N L    +P        L+++   ++ L   +P E+  L  L  + 
Sbjct: 191 LQNLPFLTAIYADNNSLKK--LPDLP---LSLESIVAGNNILE-ELP-ELQNLPFLTTIY 243

Query: 164 LSDNYLSGYIPPTLGRLSKLEILNLSSNDL 193
             +N L   +P     L  L + +    DL
Sbjct: 244 ADNNLLK-TLPDLPPSLEALNVRDNYLTDL 272

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 42.7 bits (101), Expect = 3e-05
 Identities = 24/99 (24%), Positives = 40/99 (40%), Gaps = 19/99 (19%)

Query: 108 PNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIP----LEM---------G 154
           P+L++  +  NYL    +P    +++ L   E   S L+ + P    L            
Sbjct: 257 PSLEALNVRDNYL--TDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCD 314

Query: 155 RLRNLVHLDLSDNYLSGYIPPTLGRLSKLEILNLSSNDL 193
              +L  L++S+N L   +P       +LE L  S N L
Sbjct: 315 LPPSLEELNVSNNKLI-ELPALPP---RLERLIASFNHL 349

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 42.7 bits (101), Expect = 3e-05
 Identities = 19/90 (21%), Positives = 37/90 (41%), Gaps = 8/90 (8%)

Query: 104 FSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLD 163
                +L+S    +N L       E+  +  L T+   ++ L  +  L      +L  L+
Sbjct: 211 PDLPLSLESIVAGNNIL---EELPELQNLPFLTTIYADNNLLKTLPDL----PPSLEALN 263

Query: 164 LSDNYLSGYIPPTLGRLSKLEILNLSSNDL 193
           + DNYL+  +P     L+ L++     + L
Sbjct: 264 VRDNYLTD-LPELPQSLTFLDVSENIFSGL 292

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 41.9 bits (99), Expect = 5e-05
 Identities = 13/67 (19%), Positives = 26/67 (38%), Gaps = 1/67 (1%)

Query: 125 IPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLSDNYLSGYIPPTLGRLSKLE 184
           I     + + LQ     SS+LT  +P+E   +++      + +      PP  G   ++ 
Sbjct: 3   INPRNVSNTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMA 61

Query: 185 ILNLSSN 191
           +  L   
Sbjct: 62  VSRLRDC 68

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 39.6 bits (93), Expect = 3e-04
 Identities = 19/102 (18%), Positives = 36/102 (35%), Gaps = 26/102 (25%)

Query: 108 PNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLSDN 167
           P+L+   + +N L+   +P+       L+ L    + L  +  L     +NL  L +  N
Sbjct: 317 PSLEELNVSNNKLIE--LPALP---PRLERLIASFNHLAEVPEL----PQNLKQLHVEYN 367

Query: 168 YLSGYIPPTLGRL----------------SKLEILNLSSNDL 193
            L    P     +                  L+ L++ +N L
Sbjct: 368 PLR-EFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPL 408

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 48.6 bits (116), Expect = 4e-07
 Identities = 17/90 (18%), Positives = 38/90 (42%), Gaps = 4/90 (4%)

Query: 104 FSCFPNLKSFKIHSNYLLSGSIPSEI-AAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHL 162
                NL+   + S+ +   +I  +   ++  L+ L+L  + L+ +     G L +L +L
Sbjct: 46  LRACANLQVLILKSSRI--NTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYL 103

Query: 163 DLSDNYLSG-YIPPTLGRLSKLEILNLSSN 191
           +L  N      +      L+ L+ L + + 
Sbjct: 104 NLMGNPYQTLGVTSLFPNLTNLQTLRIGNV 133

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 47.4 bits (113), Expect = 8e-07
 Identities = 23/94 (24%), Positives = 39/94 (41%), Gaps = 5/94 (5%)

Query: 104 FSCFPNLKSFKIHSNYLLSGSI--PSEIAAVSMLQTLELPSSSLTGI--IPLEMGRLRNL 159
                +L+   +  N ++   +   +   A   LQTL L  + L  +      +  L+NL
Sbjct: 330 SQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNL 389

Query: 160 VHLDLSDNYLSGYIPPTLGRLSKLEILNLSSNDL 193
             LD+S N     +P +     K+  LNLSS  +
Sbjct: 390 TSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGI 422

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 47.4 bits (113), Expect = 8e-07
 Identities = 20/90 (22%), Positives = 38/90 (42%)

Query: 104 FSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLD 163
           F    NL++ +I +    S     + A ++ L  LE+ + SL       +  +R++ HL 
Sbjct: 119 FPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLT 178

Query: 164 LSDNYLSGYIPPTLGRLSKLEILNLSSNDL 193
           L  +  +  +      LS +  L L   +L
Sbjct: 179 LHLSESAFLLEIFADILSSVRYLELRDTNL 208

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 45.9 bits (109), Expect = 2e-06
 Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 2/70 (2%)

Query: 124 SIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLSDNYLSGYIPPTLGRLSKL 183
           SIPS +   + +++L+L  + +T I   ++    NL  L L  + ++         L  L
Sbjct: 19  SIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSL 76

Query: 184 EILNLSSNDL 193
           E L+LS N L
Sbjct: 77  EHLDLSDNHL 86

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 45.5 bits (108), Expect = 3e-06
 Identities = 30/89 (33%), Positives = 41/89 (46%), Gaps = 1/89 (1%)

Query: 105 SCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDL 164
                +KS  +  N + +     ++ A + LQ L L SS +  I       L +L HLDL
Sbjct: 23  GLTAAMKSLDLSFNKI-TYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDL 81

Query: 165 SDNYLSGYIPPTLGRLSKLEILNLSSNDL 193
           SDN+LS       G LS L+ LNL  N  
Sbjct: 82  SDNHLSSLSSSWFGPLSSLKYLNLMGNPY 110

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 45.1 bits (107), Expect = 4e-06
 Identities = 11/59 (18%), Positives = 23/59 (38%)

Query: 135 LQTLELPSSSLTGIIPLEMGRLRNLVHLDLSDNYLSGYIPPTLGRLSKLEILNLSSNDL 193
           ++ L +P   L   +      L  +  + + ++ +          L  LE L+LS N +
Sbjct: 288 IRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLM 346

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 45.1 bits (107), Expect = 4e-06
 Identities = 19/105 (18%), Positives = 40/105 (38%), Gaps = 4/105 (3%)

Query: 92  NDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPL 151
           N + +  +          ++   I   YL    + +  + +  ++ + + +S +  +   
Sbjct: 270 NPSESDVVSELGKVETVTIRRLHIPQFYLFY-DLSTVYSLLEKVKRITVENSKVFLVPCS 328

Query: 152 EMGRLRNLVHLDLSDNYLSGYIPPT---LGRLSKLEILNLSSNDL 193
               L++L  LDLS+N +           G    L+ L LS N L
Sbjct: 329 FSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHL 373

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 43.6 bits (103), Expect = 1e-05
 Identities = 17/91 (18%), Positives = 41/91 (45%), Gaps = 5/91 (5%)

Query: 104 FSCFPNLKSFKIHSNYLLS-GSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHL 162
              +P+L++  +  N+L S       +  +  L +L++  ++    +P        +  L
Sbjct: 357 KGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFL 415

Query: 163 DLSDNYLSGYIPPTLGRLSKLEILNLSSNDL 193
           +LS   +   +   +     LE+L++S+N+L
Sbjct: 416 NLSSTGIR-VVKTCI--PQTLEVLDVSNNNL 443

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 42.8 bits (101), Expect = 3e-05
 Identities = 16/100 (16%), Positives = 37/100 (37%), Gaps = 1/100 (1%)

Query: 92  NDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPL 151
           N     E+ R  F+   +L   +I +  L +      + ++  +  L L  S    ++ +
Sbjct: 132 NVETFSEIRRIDFAGLTSLNELEIKALSLRNYQ-SQSLKSIRDIHHLTLHLSESAFLLEI 190

Query: 152 EMGRLRNLVHLDLSDNYLSGYIPPTLGRLSKLEILNLSSN 191
               L ++ +L+L D  L+ +    L        +   + 
Sbjct: 191 FADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAF 230

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 42.0 bits (99), Expect = 5e-05
 Identities = 19/97 (19%), Positives = 35/97 (36%), Gaps = 9/97 (9%)

Query: 99  LGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRN 158
           +   K      L+   + +N L   S    +     LQ L +  + L  +          
Sbjct: 422 IRVVKTCIPQTLEVLDVSNNNL--DSFSLFLPR---LQELYISRNKLKTLPD--ASLFPV 474

Query: 159 LVHLDLSDNYLSGYIPP-TLGRLSKLEILNLSSNDLY 194
           L+ + +S N L   +P     RL+ L+ + L +N   
Sbjct: 475 LLVMKISRNQLK-SVPDGIFDRLTSLQKIWLHTNPWD 510

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 48.1 bits (115), Expect = 4e-07
 Identities = 16/88 (18%), Positives = 39/88 (44%), Gaps = 4/88 (4%)

Query: 107 FPNLKSFKIHSNYLLSGSIPSEI-AAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLS 165
            P+L    +  N +    + +     ++ L  L L  +S++ +    +    +L  L L+
Sbjct: 191 PPSLTELHLDGNKI--TKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLN 248

Query: 166 DNYLSGYIPPTLGRLSKLEILNLSSNDL 193
           +N L   +P  L     ++++ L +N++
Sbjct: 249 NNKLV-KVPGGLADHKYIQVVYLHNNNI 275

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 45.0 bits (107), Expect = 5e-06
 Identities = 16/96 (16%), Positives = 39/96 (40%), Gaps = 10/96 (10%)

Query: 104 FSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGI------IPLEMGRLR 157
            +  P+L+   +++N L+   +P  +A    +Q + L +++++ I       P    +  
Sbjct: 236 LANTPHLRELHLNNNKLVK--VPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKA 293

Query: 158 NLVHLDLSDNYLS-GYIPP-TLGRLSKLEILNLSSN 191
           +   + L  N +    I P T   +     + L + 
Sbjct: 294 SYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 45.0 bits (107), Expect = 5e-06
 Identities = 23/91 (25%), Positives = 36/91 (39%), Gaps = 6/91 (6%)

Query: 104 FSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLD 163
           F     L   +I    +   +IP        L  L L  + +T +    +  L NL  L 
Sbjct: 167 FQGMKKLSYIRIADTNI--TTIPQG--LPPSLTELHLDGNKITKVDAASLKGLNNLAKLG 222

Query: 164 LSDNYLSGYIPP-TLGRLSKLEILNLSSNDL 193
           LS N +S  +   +L     L  L+L++N L
Sbjct: 223 LSFNSISA-VDNGSLANTPHLRELHLNNNKL 252

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 44.2 bits (105), Expect = 8e-06
 Identities = 17/92 (18%), Positives = 36/92 (39%), Gaps = 6/92 (6%)

Query: 104 FSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLD 163
           F+    L+   +  N L    +P +      LQ L +  + +T +       L  ++ ++
Sbjct: 96  FAPLVKLERLYLSKNQL--KELPEK--MPKTLQELRVHENEITKVRKSVFNGLNQMIVVE 151

Query: 164 LSDNYL-SGYIPP-TLGRLSKLEILNLSSNDL 193
           L  N L S  I       + KL  + ++  ++
Sbjct: 152 LGTNPLKSSGIENGAFQGMKKLSYIRIADTNI 183

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 44.2 bits (105), Expect = 8e-06
 Identities = 27/91 (29%), Positives = 41/91 (45%), Gaps = 6/91 (6%)

Query: 104 FSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLD 163
           F C  +L+  +     L    +P ++        L+L ++ +T I   +   L+NL  L 
Sbjct: 27  FRCQCHLRVVQCSDLGLEK--VPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLI 82

Query: 164 LSDNYLSGYIPP-TLGRLSKLEILNLSSNDL 193
           L +N +S  I P     L KLE L LS N L
Sbjct: 83  LINNKIS-KISPGAFAPLVKLERLYLSKNQL 112

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 42.7 bits (101), Expect = 3e-05
 Identities = 16/98 (16%), Positives = 36/98 (36%), Gaps = 12/98 (12%)

Query: 104 FSCFPNLKSFKIHSNYLLSGSIPSEI-AAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHL 162
                NL    +  N +   ++ +   A    L+ L L ++ L   +P  +   + +  +
Sbjct: 212 LKGLNNLAKLGLSFNSI--SAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVV 268

Query: 163 DLSDNYLSGYIPPT-------LGRLSKLEILNLSSNDL 193
            L +N +S  I            + +    ++L SN +
Sbjct: 269 YLHNNNIS-AIGSNDFCPPGYNTKKASYSGVSLFSNPV 305

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 46.9 bits (112), Expect = 1e-06
 Identities = 24/91 (26%), Positives = 32/91 (35%), Gaps = 5/91 (5%)

Query: 104 FSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLD 163
           FS   N+   ++  N L +            L  L +  + LTGI          L  L 
Sbjct: 143 FSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPK---DLPETLNELH 199

Query: 164 LSDNYLSGYIPP-TLGRLSKLEILNLSSNDL 193
           L  N +   I    L R SKL  L L  N +
Sbjct: 200 LDHNKIQ-AIELEDLLRYSKLYRLGLGHNQI 229

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 46.5 bits (111), Expect = 1e-06
 Identities = 22/88 (25%), Positives = 36/88 (40%), Gaps = 4/88 (4%)

Query: 107 FPNLKSFKIHSNYLLSGSIPSEI-AAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLS 165
              L    +  N +   +I  E     S L  L L  + +  I    +  L  L  L L 
Sbjct: 192 PETLNELHLDHNKI--QAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLD 249

Query: 166 DNYLSGYIPPTLGRLSKLEILNLSSNDL 193
           +N LS  +P  L  L  L+++ L +N++
Sbjct: 250 NNKLS-RVPAGLPDLKLLQVVYLHTNNI 276

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 44.6 bits (106), Expect = 6e-06
 Identities = 23/91 (25%), Positives = 42/91 (46%), Gaps = 6/91 (6%)

Query: 104 FSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLD 163
           F C  +L+  +     L +  +P EI+       L+L ++ ++ +   +   L++L  L 
Sbjct: 29  FGCHCHLRVVQCSDLGLKA--VPKEISPD--TTLLDLQNNDISELRKDDFKGLQHLYALV 84

Query: 164 LSDNYLSGYIPP-TLGRLSKLEILNLSSNDL 193
           L +N +S  I       L KL+ L +S N L
Sbjct: 85  LVNNKIS-KIHEKAFSPLRKLQKLYISKNHL 114

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 43.9 bits (104), Expect = 1e-05
 Identities = 30/135 (22%), Positives = 55/135 (40%), Gaps = 16/135 (11%)

Query: 68  HCKWTGVSCNSAG--SV-----IGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYL 120
           HC    V C+  G  +V        +LL  +N++I+ EL +  F    +L +  + +N +
Sbjct: 32  HCHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNNKI 90

Query: 121 LSGSIPSEI-AAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLSDNYLSGYIPP-TLG 178
               I  +  + +  LQ L +  + L  I         +LV L + DN +   +P     
Sbjct: 91  --SKIHEKAFSPLRKLQKLYISKNHLVEI---PPNLPSSLVELRIHDNRIR-KVPKGVFS 144

Query: 179 RLSKLEILNLSSNDL 193
            L  +  + +  N L
Sbjct: 145 GLRNMNCIEMGGNPL 159

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 41.5 bits (98), Expect = 7e-05
 Identities = 14/98 (14%), Positives = 37/98 (37%), Gaps = 12/98 (12%)

Query: 104 FSCFPNLKSFKIHSNYLLSGSIPSEI-AAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHL 162
              +  L    +  N +    I +   + +  L+ L L ++ L+  +P  +  L+ L  +
Sbjct: 213 LLRYSKLYRLGLGHNQI--RMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVV 269

Query: 163 DLSDNYLSGYIPPT-------LGRLSKLEILNLSSNDL 193
            L  N ++  +            + +    ++L +N +
Sbjct: 270 YLHTNNIT-KVGVNDFCPVGFGVKRAYYNGISLFNNPV 306

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 41.2 bits (97), Expect = 8e-05
 Identities = 22/91 (24%), Positives = 34/91 (37%), Gaps = 5/91 (5%)

Query: 104 FSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLD 163
           FS    L+   I  N+L    IP      S L  L +  + +  +       LRN+  ++
Sbjct: 98  FSPLRKLQKLYISKNHL--VEIPPN--LPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIE 153

Query: 164 LSDNYL-SGYIPPTLGRLSKLEILNLSSNDL 193
           +  N L +    P      KL  L +S   L
Sbjct: 154 MGGNPLENSGFEPGAFDGLKLNYLRISEAKL 184

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 45.8 bits (109), Expect = 2e-06
 Identities = 20/92 (21%), Positives = 38/92 (41%), Gaps = 5/92 (5%)

Query: 104 FSCFPNLKSFKIHSNYLLSGSIPSEI-AAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHL 162
           F     L+   +  N L   ++P +    +  L  L L  + ++ +       L +L  L
Sbjct: 125 FRGLAALQYLYLQDNAL--QALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRL 182

Query: 163 DLSDNYLSGYIPP-TLGRLSKLEILNLSSNDL 193
            L  N ++ ++ P     L +L  L L +N+L
Sbjct: 183 LLHQNRVA-HVHPHAFRDLGRLMTLYLFANNL 213

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 45.4 bits (108), Expect = 3e-06
 Identities = 25/89 (28%), Positives = 34/89 (38%), Gaps = 4/89 (4%)

Query: 107 FPNLKSFKIHSNYLLSGSIPSEI-AAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLS 165
               +   +H N +    +P+    A   L  L L S+ L  I       L  L  LDLS
Sbjct: 31  PAASQRIFLHGNRI--SHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLS 88

Query: 166 DNYLSGYIPP-TLGRLSKLEILNLSSNDL 193
           DN     + P T   L +L  L+L    L
Sbjct: 89  DNAQLRSVDPATFHGLGRLHTLHLDRCGL 117

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 42.3 bits (100), Expect = 3e-05
 Identities = 26/109 (23%), Positives = 43/109 (39%), Gaps = 7/109 (6%)

Query: 88  LWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEI-AAVSMLQTLELPS-SSL 145
           ++   + I+  +    F    NL    +HSN L    I +     +++L+ L+L   + L
Sbjct: 37  IFLHGNRIS-HVPAASFRACRNLTILWLHSNVL--ARIDAAAFTGLALLEQLDLSDNAQL 93

Query: 146 TGIIPLEMGRLRNLVHLDLSDNYLSGYIPP-TLGRLSKLEILNLSSNDL 193
             + P     L  L  L L    L   + P     L+ L+ L L  N L
Sbjct: 94  RSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNAL 141

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 42.3 bits (100), Expect = 4e-05
 Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 4/69 (5%)

Query: 124 SIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLSDNYLSGYIPP-TLGRLSK 182
           ++P  I A    Q + L  + ++ +        RNL  L L  N L+  I       L+ 
Sbjct: 25  AVPVGIPAA--SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLAL 81

Query: 183 LEILNLSSN 191
           LE L+LS N
Sbjct: 82  LEQLDLSDN 90

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 40.0 bits (94), Expect = 2e-04
 Identities = 25/90 (27%), Positives = 36/90 (40%), Gaps = 5/90 (5%)

Query: 104 FSCFPNLKSFKIHSNYLLSGSIPSEI-AAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHL 162
           F    NL    +H N +   S+P      +  L  L L  + +  + P     L  L+ L
Sbjct: 149 FRDLGNLTHLFLHGNRI--SSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTL 206

Query: 163 DLSDNYLSGYIPP-TLGRLSKLEILNLSSN 191
            L  N LS  +P   L  L  L+ L L+ N
Sbjct: 207 YLFANNLS-ALPTEALAPLRALQYLRLNDN 235

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 45.9 bits (109), Expect = 2e-06
 Identities = 26/91 (28%), Positives = 40/91 (43%), Gaps = 4/91 (4%)

Query: 104 FSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLD 163
               P L +  +  N L   S+P     +  L  L++  + LT +    +  L  L  L 
Sbjct: 73  DGTLPVLGTLDLSHNQL--QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELY 130

Query: 164 LSDNYLSGYIPP-TLGRLSKLEILNLSSNDL 193
           L  N L   +PP  L    KLE L+L++N+L
Sbjct: 131 LKGNELK-TLPPGLLTPTPKLEKLSLANNNL 160

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 43.9 bits (104), Expect = 1e-05
 Identities = 18/90 (20%), Positives = 28/90 (31%), Gaps = 6/90 (6%)

Query: 104 FSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLD 163
            S   +          L   ++P ++        L L  + L       +     L  L+
Sbjct: 6   VSKVASHLEVNCDKRNL--TALPPDLPK--DTTILHLSENLLYTFSLATLMPYTRLTQLN 61

Query: 164 LSDNYLSGYIPPTLGRLSKLEILNLSSNDL 193
           L    L+       G L  L  L+LS N L
Sbjct: 62  LDRAELT--KLQVDGTLPVLGTLDLSHNQL 89

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 41.6 bits (98), Expect = 5e-05
 Identities = 24/87 (27%), Positives = 36/87 (41%), Gaps = 4/87 (4%)

Query: 107 FPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLSD 166
             +     +  N L + S  + +   + L  L L  + LT +     G L  L  LDLS 
Sbjct: 30  PKDTTILHLSENLLYTFS-LATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLGTLDLSH 86

Query: 167 NYLSGYIPPTLGRLSKLEILNLSSNDL 193
           N L   +P     L  L +L++S N L
Sbjct: 87  NQLQS-LPLLGQTLPALTVLDVSFNRL 112

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 38.9 bits (91), Expect = 5e-04
 Identities = 25/92 (27%), Positives = 36/92 (39%), Gaps = 5/92 (5%)

Query: 104 FSCFPNLKSFKIHSNYLLSGSIPSEI-AAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHL 162
               P L    +  N L   S+P      +  LQ L L  + L  + P  +     L  L
Sbjct: 96  GQTLPALTVLDVSFNRL--TSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKL 153

Query: 163 DLSDNYLSGYIPP-TLGRLSKLEILNLSSNDL 193
            L++N L+  +P   L  L  L+ L L  N L
Sbjct: 154 SLANNNLTE-LPAGLLNGLENLDTLLLQENSL 184

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 45.2 bits (107), Expect = 4e-06
 Identities = 22/90 (24%), Positives = 35/90 (38%), Gaps = 6/90 (6%)

Query: 107 FPNLKSFKIHSNYLLSGSIPSEIAAVSM--LQTLELPSSSLTGIIPLEMGRLRNLVHLDL 164
                   +  N L    + +E     +  L +L L  + L  I       + NL +LDL
Sbjct: 38  PSYTALLDLSHNNL--SRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDL 95

Query: 165 SDNYLSGYIPP-TLGRLSKLEILNLSSNDL 193
           S N+L   +       L  LE+L L +N +
Sbjct: 96  SSNHLH-TLDEFLFSDLQALEVLLLYNNHI 124

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 41.8 bits (98), Expect = 5e-05
 Identities = 26/95 (27%), Positives = 44/95 (46%), Gaps = 8/95 (8%)

Query: 104 FSCFPNLKSFKIHSNYLLSGSIPSEI-AAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHL 162
           F   PNL+   + SN+L   ++   + + +  L+ L L ++ +  +       +  L  L
Sbjct: 84  FVPVPNLRYLDLSSNHL--HTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKL 141

Query: 163 DLSDNYLSGYIPP----TLGRLSKLEILNLSSNDL 193
            LS N +S   P        +L KL +L+LSSN L
Sbjct: 142 YLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKL 175

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 43.9 bits (104), Expect = 4e-06
 Identities = 27/99 (27%), Positives = 41/99 (41%), Gaps = 5/99 (5%)

Query: 95  ITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMG 154
           I  EL     S   ++K   + ++    G +         L+ L   +  LT I  L   
Sbjct: 7   IHLELRNRTPS---DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLP-- 61

Query: 155 RLRNLVHLDLSDNYLSGYIPPTLGRLSKLEILNLSSNDL 193
           +L  L  L+LSDN +SG +     +   L  LNLS N +
Sbjct: 62  KLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKI 100

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 37.3 bits (87), Expect = 8e-04
 Identities = 21/86 (24%), Positives = 40/86 (46%), Gaps = 4/86 (4%)

Query: 107 FPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLSD 166
           F  L+     +  L S +    +  ++ L+ LEL  + ++G + +   +  NL HL+LS 
Sbjct: 41  FEELEFLSTINVGLTSIAN---LPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSG 97

Query: 167 NYLSGY-IPPTLGRLSKLEILNLSSN 191
           N +        L +L  L+ L+L + 
Sbjct: 98  NKIKDLSTIEPLKKLENLKSLDLFNC 123

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 44.7 bits (106), Expect = 6e-06
 Identities = 21/91 (23%), Positives = 39/91 (42%), Gaps = 2/91 (2%)

Query: 104 FSCFPNLKSFKIHSNYLLSGSIPSEI-AAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHL 162
           FS    L+  ++ +    +  I  +  A ++ L+ LE+ +S L    P  +  ++N+ HL
Sbjct: 145 FSHLTKLQILRVGNMDTFT-KIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHL 203

Query: 163 DLSDNYLSGYIPPTLGRLSKLEILNLSSNDL 193
            L        +   +   S +E L L   DL
Sbjct: 204 ILHMKQHILLLEIFVDVTSSVECLELRDTDL 234

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 43.6 bits (103), Expect = 1e-05
 Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 4/71 (5%)

Query: 124 SIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLSDNYLSGYIPP-TLGRLSK 182
           SIPS +     +++L+L ++ +T I   ++ R  NL  L L+ N ++  I   +   L  
Sbjct: 45  SIPSGLTEA--VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGS 101

Query: 183 LEILNLSSNDL 193
           LE L+LS N L
Sbjct: 102 LEHLDLSYNYL 112

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 40.9 bits (96), Expect = 9e-05
 Identities = 17/96 (17%), Positives = 38/96 (39%), Gaps = 10/96 (10%)

Query: 104 FSCFPNLKSFKIHSNYL-------LSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRL 156
                +++  ++    L       LS    + +      + +++   SL  ++ L    +
Sbjct: 218 VDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQ-I 276

Query: 157 RNLVHLDLSDNYLSGYIPP-TLGRLSKLEILNLSSN 191
             L+ L+ S N L   +P     RL+ L+ + L +N
Sbjct: 277 SGLLELEFSRNQLKS-VPDGIFDRLTSLQKIWLHTN 311

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 40.9 bits (96), Expect = 1e-04
 Identities = 24/60 (40%), Positives = 28/60 (46%), Gaps = 2/60 (3%)

Query: 135 LQTLELPSSSLTGIIPLEMGRLRNLVHLDLSDNYLSGYIPP-TLGRLSKLEILNLSSNDL 193
           LQ L L S+ +  I       L +L HLDLS NYLS  +       LS L  LNL  N  
Sbjct: 78  LQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS-NLSSSWFKPLSSLTFLNLLGNPY 136

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 39.7 bits (93), Expect = 3e-04
 Identities = 18/115 (15%), Positives = 36/115 (31%), Gaps = 13/115 (11%)

Query: 88  LWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEI-AAVSMLQTLEL------ 140
           L  +  ++             N+    +H        +        S ++ LEL      
Sbjct: 179 LEIDASDLQ-SYEPKSLKSIQNVSHLILHMKQH--ILLLEIFVDVTSSVECLELRDTDLD 235

Query: 141 --PSSSLTGIIPLEMGRLRNLVHLDLSDNYLSGYIPPTLGRLSKLEILNLSSNDL 193
               S L+      + +     ++ ++D  L   +   L ++S L  L  S N L
Sbjct: 236 TFHFSELSTGETNSLIKKFTFRNVKITDESLF-QVMKLLNQISGLLELEFSRNQL 289

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 44.7 bits (105), Expect = 7e-06
 Identities = 15/82 (18%), Positives = 27/82 (32%), Gaps = 3/82 (3%)

Query: 114 KIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEM-GRLRNLVHLDLSDNYLSGY 172
            +      +      +     L  L + +      + L     L  L +L +  + L  +
Sbjct: 12  GLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-F 70

Query: 173 IPP-TLGRLSKLEILNLSSNDL 193
           + P       +L  LNLS N L
Sbjct: 71  VAPDAFHFTPRLSRLNLSFNAL 92

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 42.8 bits (100), Expect = 2e-05
 Identities = 21/91 (23%), Positives = 32/91 (35%), Gaps = 3/91 (3%)

Query: 104 FSCFPNLKSFKIHSNYLLSGSIPSE-IAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHL 162
                NL    I +   L   +    +  +  L+ L +  S L  + P        L  L
Sbjct: 27  LPGAENLTELYIENQQHLQ-HLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRL 85

Query: 163 DLSDNYLSGYIPPTLGRLSKLEILNLSSNDL 193
           +LS N L   +     +   L+ L LS N L
Sbjct: 86  NLSFNALE-SLSWKTVQGLSLQELVLSGNPL 115

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 43.9 bits (104), Expect = 8e-06
 Identities = 23/92 (25%), Positives = 38/92 (41%), Gaps = 7/92 (7%)

Query: 102 FKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVH 161
           F      N        + +         A +  + TL    + +T I  ++   L NL+ 
Sbjct: 13  FPDPALANAIKIAAGKSNVTD---TVTQADLDGITTLSAFGTGVTTIEGVQY--LNNLIG 67

Query: 162 LDLSDNYLSGYIPPTLGRLSKLEILNLSSNDL 193
           L+L DN ++  + P L  L+K+  L LS N L
Sbjct: 68  LELKDNQITD-LAP-LKNLTKITELELSGNPL 97

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 43.9 bits (104), Expect = 1e-05
 Identities = 25/90 (27%), Positives = 42/90 (46%), Gaps = 7/90 (7%)

Query: 104 FSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLD 163
            +   ++K+  + S  +   +  + +A +S LQ L L  + +T I PL    L NL +L 
Sbjct: 103 IAGLQSIKTLDLTSTQI---TDVTPLAGLSNLQVLYLDLNQITNISPLA--GLTNLQYLS 157

Query: 164 LSDNYLSGYIPPTLGRLSKLEILNLSSNDL 193
           + +  +S   P  L  LSKL  L    N +
Sbjct: 158 IGNAQVSDLTP--LANLSKLTTLKADDNKI 185

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 41.6 bits (98), Expect = 6e-05
 Identities = 24/90 (26%), Positives = 43/90 (47%), Gaps = 7/90 (7%)

Query: 104 FSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLD 163
            +   NL+   I +  +   S  + +A +S L TL+   + ++ I PL    L NL+ + 
Sbjct: 147 LAGLTNLQYLSIGNAQV---SDLTPLANLSKLTTLKADDNKISDISPLA--SLPNLIEVH 201

Query: 164 LSDNYLSGYIPPTLGRLSKLEILNLSSNDL 193
           L +N +S   P  L   S L I+ L++  +
Sbjct: 202 LKNNQISDVSP--LANTSNLFIVTLTNQTI 229

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 40.8 bits (96), Expect = 1e-04
 Identities = 18/90 (20%), Positives = 39/90 (43%), Gaps = 7/90 (7%)

Query: 104 FSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLD 163
            +    + +       +   +I   +  ++ L  LEL  + +T + PL+   L  +  L+
Sbjct: 37  QADLDGITTLSAFGTGV--TTI-EGVQYLNNLIGLELKDNQITDLAPLK--NLTKITELE 91

Query: 164 LSDNYLSGYIPPTLGRLSKLEILNLSSNDL 193
           LS N L   +   +  L  ++ L+L+S  +
Sbjct: 92  LSGNPLKN-VSA-IAGLQSIKTLDLTSTQI 119

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 42.8 bits (101), Expect = 1e-05
 Identities = 23/87 (26%), Positives = 36/87 (41%), Gaps = 2/87 (2%)

Query: 107 FPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLSD 166
              ++   + +     G I    A    L+ L L +  L  +  L   +L  L  L+LS+
Sbjct: 23  PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLP--KLPKLKKLELSE 80

Query: 167 NYLSGYIPPTLGRLSKLEILNLSSNDL 193
           N + G +     +L  L  LNLS N L
Sbjct: 81  NRIFGGLDMLAEKLPNLTHLNLSGNKL 107

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 38.2 bits (89), Expect = 5e-04
 Identities = 26/89 (29%), Positives = 45/89 (50%), Gaps = 6/89 (6%)

Query: 105 SCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDL 164
           + F NL+   + +  L+S S    +  +  L+ LEL  + + G + +   +L NL HL+L
Sbjct: 46  AEFVNLEFLSLINVGLISVSN---LPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNL 102

Query: 165 SDNYLSGY--IPPTLGRLSKLEILNLSSN 191
           S N L     + P L +L  L+ L+L + 
Sbjct: 103 SGNKLKDISTLEP-LKKLECLKSLDLFNC 130

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 43.9 bits (103), Expect = 1e-05
 Identities = 17/92 (18%), Positives = 32/92 (34%), Gaps = 7/92 (7%)

Query: 102 FKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVH 161
           F    F       +    +           ++ +  +   +S +  +  ++   L N+  
Sbjct: 15  FPDDAFAETIKDNLKKKSVTD---AVTQNELNSIDQIIANNSDIKSVQGIQY--LPNVTK 69

Query: 162 LDLSDNYLSGYIPPTLGRLSKLEILNLSSNDL 193
           L L+ N L+  I P L  L  L  L L  N +
Sbjct: 70  LFLNGNKLTD-IKP-LTNLKNLGWLFLDENKI 99

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 42.8 bits (100), Expect = 3e-05
 Identities = 22/90 (24%), Positives = 39/90 (43%), Gaps = 7/90 (7%)

Query: 104 FSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLD 163
            +   NL    +  N +      S +  +  L++L L  + ++ I  L    L  L  L 
Sbjct: 83  LTNLKNLGWLFLDENKI---KDLSSLKDLKKLKSLSLEHNGISDINGLVH--LPQLESLY 137

Query: 164 LSDNYLSGYIPPTLGRLSKLEILNLSSNDL 193
           L +N ++      L RL+KL+ L+L  N +
Sbjct: 138 LGNNKIT--DITVLSRLTKLDTLSLEDNQI 165

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 43.4 bits (103), Expect = 1e-05
 Identities = 22/92 (23%), Positives = 43/92 (46%), Gaps = 4/92 (4%)

Query: 104 FSCFPNLKSFKIHSNYLLSGSIPSEI-AAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHL 162
           +    +L +  +  N +   S+     + +S LQ L    ++L  +    +G L+ L  L
Sbjct: 72  YQSLSHLSTLILTGNPI--QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKEL 129

Query: 163 DLSDNYLSGYIPP-TLGRLSKLEILNLSSNDL 193
           +++ N +  +  P     L+ LE L+LSSN +
Sbjct: 130 NVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 40.7 bits (96), Expect = 1e-04
 Identities = 17/71 (23%), Positives = 25/71 (35%), Gaps = 4/71 (5%)

Query: 124 SIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLSDNYLSGYIPP-TLGRLSK 182
            IP  +      + L+L  + L  +          L  LDLS   +   I       LS 
Sbjct: 21  KIPDNLPFS--TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSH 77

Query: 183 LEILNLSSNDL 193
           L  L L+ N +
Sbjct: 78  LSTLILTGNPI 88

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 44.1 bits (104), Expect = 1e-05
 Identities = 22/89 (24%), Positives = 34/89 (38%), Gaps = 2/89 (2%)

Query: 107 FPNLKSFKIHSNYLLSGSIPSEIA--AVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDL 164
             +LK+  IH         P        S +       S    +  L   ++   +HLD 
Sbjct: 272 GTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDF 331

Query: 165 SDNYLSGYIPPTLGRLSKLEILNLSSNDL 193
           S+N L+  +    G L++LE L L  N L
Sbjct: 332 SNNLLTDTVFENCGHLTELETLILQMNQL 360

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 43.7 bits (103), Expect = 2e-05
 Identities = 14/70 (20%), Positives = 29/70 (41%), Gaps = 2/70 (2%)

Query: 124 SIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLSDNYLSGYIPPTLGRLSKL 183
            +P +++       L +  + ++ +   ++  L  L  L +S N +            +L
Sbjct: 14  HVPKDLSQK--TTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQEL 71

Query: 184 EILNLSSNDL 193
           E L+LS N L
Sbjct: 72  EYLDLSHNKL 81

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 42.9 bits (101), Expect = 3e-05
 Identities = 22/90 (24%), Positives = 39/90 (43%), Gaps = 3/90 (3%)

Query: 104 FSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLD 163
            +   +L+   I  N +       + +    L +L + S+ LT  I   +     +  LD
Sbjct: 370 TTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL--PPRIKVLD 427

Query: 164 LSDNYLSGYIPPTLGRLSKLEILNLSSNDL 193
           L  N +   IP  + +L  L+ LN++SN L
Sbjct: 428 LHSNKIKS-IPKQVVKLEALQELNVASNQL 456

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 41.8 bits (98), Expect = 6e-05
 Identities = 22/86 (25%), Positives = 35/86 (40%), Gaps = 4/86 (4%)

Query: 108 PNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLSDN 167
                  I  NY+ S    S+I ++S L+ L +  + +  +        + L +LDLS N
Sbjct: 21  QKTTILNISQNYI-SELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN 79

Query: 168 YLSGYIPPTLGRLSKLEILNLSSNDL 193
            L   I         L+ L+LS N  
Sbjct: 80  KLVK-IS--CHPTVNLKHLDLSFNAF 102

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 40.2 bits (94), Expect = 2e-04
 Identities = 24/108 (22%), Positives = 49/108 (45%), Gaps = 12/108 (11%)

Query: 88  LWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSG---SIPSEIAAVSMLQTLELPSSS 144
           L    ++++ +  +   S   +L S  + SN L       +P        ++ L+L S+ 
Sbjct: 379 LDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPR------IKVLDLHSNK 432

Query: 145 LTGIIPLEMGRLRNLVHLDLSDNYLSGYIPP-TLGRLSKLEILNLSSN 191
           +  I P ++ +L  L  L+++ N L   +P     RL+ L+ + L +N
Sbjct: 433 IKSI-PKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTN 478

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 40.2 bits (94), Expect = 2e-04
 Identities = 21/88 (23%), Positives = 38/88 (43%), Gaps = 7/88 (7%)

Query: 109 NLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLSDNY 168
           N+K+F +    ++    PS+I   S    L+  ++ LT  +    G L  L  L L  N 
Sbjct: 303 NIKNFTVSGTRMVHMLCPSKI---SPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQ 359

Query: 169 LSGYIPPTLG---RLSKLEILNLSSNDL 193
           L   +        ++  L+ L++S N +
Sbjct: 360 LK-ELSKIAEMTTQMKSLQQLDISQNSV 386

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 43.6 bits (103), Expect = 1e-05
 Identities = 25/113 (22%), Positives = 46/113 (40%), Gaps = 9/113 (7%)

Query: 90  YENDNITGELGRFKFSCFPNLKSFKIHSNYL----LSG----SIPSEI-AAVSMLQTLEL 140
             + N+    G   F    N     + ++ +    LS     ++   + +  + L+ L L
Sbjct: 247 SNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTL 306

Query: 141 PSSSLTGIIPLEMGRLRNLVHLDLSDNYLSGYIPPTLGRLSKLEILNLSSNDL 193
             + +  I       L +L+ L+LS N+L          L KLE+L+LS N +
Sbjct: 307 AQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHI 359

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 42.0 bits (99), Expect = 5e-05
 Identities = 24/92 (26%), Positives = 37/92 (40%), Gaps = 5/92 (5%)

Query: 104 FSCFPNLKSFKIHSNYLLSGSIPSEI-AAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHL 162
           FS F +L+   +  N +    I       ++ L  L L  + L  I       L  L  L
Sbjct: 295 FSHFTDLEQLTLAQNEI--NKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVL 352

Query: 163 DLSDNYLSGYIPP-TLGRLSKLEILNLSSNDL 193
           DLS N++   +   +   L  L+ L L +N L
Sbjct: 353 DLSYNHIR-ALGDQSFLGLPNLKELALDTNQL 383

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 42.0 bits (99), Expect = 5e-05
 Identities = 16/88 (18%), Positives = 33/88 (37%), Gaps = 4/88 (4%)

Query: 108 PNLKSFKIHSNYLLSGSIPSE-IAAVSMLQTLELPSSSLTGIIPLEM-GRLRNLVHLDLS 165
            ++    +  N +    +     + +  LQ L++   +   +I       L +L+ L L 
Sbjct: 30  AHVNYVDLSLNSI--AELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLD 87

Query: 166 DNYLSGYIPPTLGRLSKLEILNLSSNDL 193
            N            L+ LE+L L+  +L
Sbjct: 88  YNQFLQLETGAFNGLANLEVLTLTQCNL 115

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 39.0 bits (91), Expect = 5e-04
 Identities = 24/90 (26%), Positives = 39/90 (43%), Gaps = 5/90 (5%)

Query: 104 FSCFPNLKSFKIHSNYLLSGSIPSEI-AAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHL 162
           F    +L    +  N+L  GSI S +   +  L+ L+L  + +  +       L NL  L
Sbjct: 319 FWGLTHLLKLNLSQNFL--GSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKEL 376

Query: 163 DLSDNYLSGYIPP-TLGRLSKLEILNLSSN 191
            L  N L   +P     RL+ L+ + L +N
Sbjct: 377 ALDTNQLKS-VPDGIFDRLTSLQKIWLHTN 405

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 38.6 bits (90), Expect = 8e-04
 Identities = 20/95 (21%), Positives = 34/95 (35%), Gaps = 4/95 (4%)

Query: 104 FSCFPNLKSFKIHSNYLLSGSIPSEI-AAVSMLQTLELPSSSLTGIIPLEM-GRLRNLVH 161
           F+   NL+   +    L    +       ++ L+ L L  +++  I P      +R    
Sbjct: 99  FNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHV 158

Query: 162 LDLSDNYLSGYIPPTLGRLSK--LEILNLSSNDLY 194
           LDL+ N +       L         +L LSS  L 
Sbjct: 159 LDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQ 193

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 41.9 bits (99), Expect = 5e-05
 Identities = 30/91 (32%), Positives = 41/91 (45%), Gaps = 6/91 (6%)

Query: 104 FSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLD 163
            SC  N  S    S  L +  IPS I A    + L+L S+ L+ +      RL  L  L 
Sbjct: 12  CSCNNNKNSVDCSSKKLTA--IPSNIPA--DTKKLDLQSNKLSSLPSKAFHRLTKLRLLY 67

Query: 164 LSDNYLSGYIPPTL-GRLSKLEILNLSSNDL 193
           L+DN L   +P  +   L  LE L ++ N L
Sbjct: 68  LNDNKLQT-LPAGIFKELKNLETLWVTDNKL 97

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 38.4 bits (90), Expect = 6e-04
 Identities = 28/108 (25%), Positives = 50/108 (46%), Gaps = 6/108 (5%)

Query: 88  LWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEI-AAVSMLQTLELPSSSLT 146
           L  +++ ++  L    F     L+   ++ N L   ++P+ I   +  L+TL +  + L 
Sbjct: 42  LDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKL--QTLPAGIFKELKNLETLWVTDNKLQ 98

Query: 147 GIIPLEMGRLRNLVHLDLSDNYLSGYIPPTL-GRLSKLEILNLSSNDL 193
            +      +L NL  L L  N L   +PP +   L+KL  L+L  N+L
Sbjct: 99  ALPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNEL 145

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 41.6 bits (98), Expect = 7e-05
 Identities = 18/95 (18%), Positives = 30/95 (31%), Gaps = 9/95 (9%)

Query: 99  LGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRN 158
           L     S    L +       L       EI      Q +   +     I  L++     
Sbjct: 245 LTELDVSTLSKLTTLHCIQTDL------LEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQ 298

Query: 159 LVHLDLSDNYLSGYIPPTLGRLSKLEILNLSSNDL 193
           L  LD     ++  +   L +  KL  L L++ +L
Sbjct: 299 LYLLDCQAAGIT-ELD--LSQNPKLVYLYLNNTEL 330

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 40.1 bits (94), Expect = 2e-04
 Identities = 19/90 (21%), Positives = 37/90 (41%), Gaps = 9/90 (10%)

Query: 104 FSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLD 163
            S    L     H N  ++     ++   + L TL+   + +T    L++ + + L  L+
Sbjct: 144 VSHNTQLTELDCHLNKKIT---KLDVTPQTQLTTLDCSFNKITE---LDVSQNKLLNRLN 197

Query: 164 LSDNYLSGYIPPTLGRLSKLEILNLSSNDL 193
              N ++      L +  +L  L+ SSN L
Sbjct: 198 CDTNNITK---LDLNQNIQLTFLDCSSNKL 224

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 39.7 bits (93), Expect = 3e-04
 Identities = 18/86 (20%), Positives = 39/86 (45%), Gaps = 6/86 (6%)

Query: 108 PNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLSDN 167
            N  S ++ + + +  +       ++ L +L+  +SS+T +  +E  +L  L  L  + N
Sbjct: 18  DNFAS-EVAAAFEMQATDTISEEQLATLTSLDCHNSSITDMTGIE--KLTGLTKLICTSN 74

Query: 168 YLSGYIPPTLGRLSKLEILNLSSNDL 193
            ++  +   L + + L  L   SN L
Sbjct: 75  NIT-TLD--LSQNTNLTYLACDSNKL 97

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 38.5 bits (90), Expect = 6e-04
 Identities = 16/90 (17%), Positives = 34/90 (37%), Gaps = 9/90 (10%)

Query: 104 FSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLD 163
            +    L  F+      +          V+    L L      GI  L++ +   LV+L 
Sbjct: 271 LTHNTQLIYFQAEGCRKIK------ELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLY 324

Query: 164 LSDNYLSGYIPPTLGRLSKLEILNLSSNDL 193
           L++  L+  +   +   +KL+ L+  +  +
Sbjct: 325 LNNTELT-ELD--VSHNTKLKSLSCVNAHI 351

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 41.2 bits (97), Expect = 7e-05
 Identities = 24/90 (26%), Positives = 38/90 (42%), Gaps = 7/90 (7%)

Query: 104 FSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLD 163
               PN+    ++ N L    I   +A +  L  L L  + +  +  L+   L+ L  L 
Sbjct: 64  IQYLPNVTKLFLNGNKL--TDI-KPLANLKNLGWLFLDENKVKDLSSLK--DLKKLKSLS 118

Query: 164 LSDNYLSGYIPPTLGRLSKLEILNLSSNDL 193
           L  N +S  I   L  L +LE L L +N +
Sbjct: 119 LEHNGIS-DING-LVHLPQLESLYLGNNKI 146

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 40.4 bits (95), Expect = 1e-04
 Identities = 17/92 (18%), Positives = 32/92 (34%), Gaps = 7/92 (7%)

Query: 102 FKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVH 161
           F    F       +    +           ++ +  +   +S +  +  ++   L N+  
Sbjct: 18  FSDDAFAETIKDNLKKKSVTD---AVTQNELNSIDQIIANNSDIKSVQGIQY--LPNVTK 72

Query: 162 LDLSDNYLSGYIPPTLGRLSKLEILNLSSNDL 193
           L L+ N L+  I P L  L  L  L L  N +
Sbjct: 73  LFLNGNKLT-DIKP-LANLKNLGWLFLDENKV 102

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 40.0 bits (94), Expect = 2e-04
 Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 4/59 (6%)

Query: 135 LQTLELPSSSLTGIIPLEMGRLRNLVHLDLSDNYLSGYIPPTLGRLSKLEILNLSSNDL 193
           L++L L  + ++ I  L    L  L  L L +N ++  I   L RL+KL+ L+L  N +
Sbjct: 114 LKSLSLEHNGISDINGLV--HLPQLESLYLGNNKITD-ITV-LSRLTKLDTLSLEDNQI 168

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 40.0 bits (94), Expect = 1e-04
 Identities = 27/135 (20%), Positives = 50/135 (37%), Gaps = 14/135 (10%)

Query: 69  CKWTGVSCNSAG--SV-----IGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLL 121
           C+ T V C++     +        + L   N+  T       F   P L+     +N + 
Sbjct: 11  CEGTTVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKI- 69

Query: 122 SGSIPSEI-AAVSMLQTLELPSSSLTGIIPLEM-GRLRNLVHLDLSDNYLSGYIPP-TLG 178
              I        S +  + L S+ L  +   +M   L +L  L L  N ++  +   +  
Sbjct: 70  -TDIEEGAFEGASGVNEILLTSNRLENV-QHKMFKGLESLKTLMLRSNRIT-CVGNDSFI 126

Query: 179 RLSKLEILNLSSNDL 193
            LS + +L+L  N +
Sbjct: 127 GLSSVRLLSLYDNQI 141

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 40.0 bits (94), Expect = 2e-04
 Identities = 17/71 (23%), Positives = 30/71 (42%), Gaps = 4/71 (5%)

Query: 124 SIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLSDNYLSGYIPP-TLGRLSK 182
            IP+ +     +  + L  +++  I P      + L  +DLS+N +S  + P     L  
Sbjct: 25  EIPTNLPET--ITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRS 81

Query: 183 LEILNLSSNDL 193
           L  L L  N +
Sbjct: 82  LNSLVLYGNKI 92

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 40.6 bits (95), Expect = 2e-04
 Identities = 26/109 (23%), Positives = 45/109 (41%), Gaps = 10/109 (9%)

Query: 88  LWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEI-AAVSMLQTLELPSSSLT 146
           L    ++I+ EL     S    L+  ++  N +   S+   +      L+ L++  + L 
Sbjct: 57  LSLSQNSIS-ELRMPDISFLSELRVLRLSHNRI--RSLDFHVFLFNQDLEYLDVSHNRLQ 113

Query: 147 GIIPLEMGRLRNLVHLDLSDNYLSGYIPPT--LGRLSKLEILNLSSNDL 193
               +    + +L HLDLS N     +P     G L+KL  L LS+   
Sbjct: 114 N---ISCCPMASLRHLDLSFNDFDV-LPVCKEFGNLTKLTFLGLSAAKF 158

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 39.6 bits (93), Expect = 2e-04
 Identities = 22/93 (23%), Positives = 38/93 (40%), Gaps = 14/93 (15%)

Query: 104 FSCFPNLKSFKIHSNYLLSGSIPSEIAAVSM---LQTLELPSSSLTGIIPLEMGRLRNLV 160
              F NLK   +  N +      S+++ +     L+ L +  + L  +  +       L 
Sbjct: 59  MQFFTNLKELHLSHNQI------SDLSPLKDLTKLEELSVNRNRLKNLNGIP---SACLS 109

Query: 161 HLDLSDNYLSGYIPPTLGRLSKLEILNLSSNDL 193
            L L +N L      +L  L  LEIL++ +N L
Sbjct: 110 RLFLDNNELRD--TDSLIHLKNLEILSIRNNKL 140

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 39.8 bits (93), Expect = 2e-04
 Identities = 24/110 (21%), Positives = 42/110 (38%), Gaps = 6/110 (5%)

Query: 88  LWYENDNITGELGRFKFSCFPNLKSFKI-HSNYLLSGSIPSEI-AAVSMLQTLELPSSSL 145
           +    +++   +    FS  P L   +I  +N LL   I  E    +  LQ L + ++ +
Sbjct: 59  IEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLY--INPEAFQNLPNLQYLLISNTGI 116

Query: 146 TGIIPLEMGRLRNLVHLDLSDNYLSGYIPPTL--GRLSKLEILNLSSNDL 193
             +  +        V LD+ DN     I      G   +  IL L+ N +
Sbjct: 117 KHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGI 166

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 39.4 bits (92), Expect = 3e-04
 Identities = 17/90 (18%), Positives = 33/90 (36%), Gaps = 6/90 (6%)

Query: 106 CFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLS 165
           C  + + F    + +    IPS++        L    + L  I         +L  +++S
Sbjct: 7   CHCSNRVFLCQESKVTE--IPSDLPRN--AIELRFVLTKLRVIQKGAFSGFGDLEKIEIS 62

Query: 166 DNYLSGYIPP-TLGRLSKLEILNLS-SNDL 193
            N +   I       L KL  + +  +N+L
Sbjct: 63  QNDVLEVIEADVFSNLPKLHEIRIEKANNL 92

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 38.4 bits (90), Expect = 4e-04
 Identities = 23/72 (31%), Positives = 33/72 (45%), Gaps = 5/72 (6%)

Query: 124 SIPSEIAAVSMLQTLELPSSSLTGIIPLEM-GRLRNLVHLDLSDNYLSGYIPP-TLGRLS 181
            IP +I   +    L L  + L  I    + GRL +LV L+L  N L+G I P      S
Sbjct: 22  EIPRDIPLHT--TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTG-IEPNAFEGAS 78

Query: 182 KLEILNLSSNDL 193
            ++ L L  N +
Sbjct: 79  HIQELQLGENKI 90

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 38.1 bits (89), Expect = 7e-04
 Identities = 24/89 (26%), Positives = 36/89 (40%), Gaps = 4/89 (4%)

Query: 105 SCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDL 164
           +C    K        L   S+PS I A +  + L+L S+ L  +       L  L  L+L
Sbjct: 11  TCNEGKKEVDCQGKSL--DSVPSGIPADT--EKLDLQSTGLATLSDATFRGLTKLTWLNL 66

Query: 165 SDNYLSGYIPPTLGRLSKLEILNLSSNDL 193
             N L          L++L  L L++N L
Sbjct: 67  DYNQLQTLSAGVFDDLTELGTLGLANNQL 95

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	194
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.92
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.87
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.85
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.84
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.8
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.79
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.76
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.75
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.74
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.74
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.73
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.73
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.73
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.73
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.73
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.72
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.71
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.71
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.7
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.7
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.69
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.68
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.67
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.66
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.65
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.65
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.65
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.65
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.64
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.64
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.64
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.64
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.63
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.63
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.63
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.63
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.63
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.63
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.62
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.62
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.62
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.61
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.61
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.61
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.6
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.6
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.6
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.6
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.6
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.59
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.59
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.58
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.58
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.57
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.57
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.57
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.57
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.57
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.56
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.56
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.56
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.56
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.56
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.55
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.55
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.55
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.55
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.55
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.54
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.54
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.54
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.54
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.54
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.54
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.53
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.53
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.53
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.53
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.53
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.53
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.52
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.52
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.52
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.51
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.51
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.51
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.51
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.5
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.5
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.49
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.49
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.49
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.48
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.48
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.47
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.47
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.46
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.45
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.45
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.44
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.44
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.43
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.42
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.41
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.39
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.39
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.39
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.38
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.38
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.38
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.36
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.34
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.33
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.29
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.28
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.28
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.28
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.27
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.27
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.24
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.23
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.22
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.22
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.2
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.18
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.18
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.17
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.15
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.15
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.13
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.13
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.09
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.08
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.08
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	98.98
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	98.89
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.85
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.8
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.73
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.7
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.67
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.57
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	98.51
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.48
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	98.47
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.13
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.1
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	98.08
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	98.04
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	97.96
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.95
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	97.72
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.6
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.55
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	97.53
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.21
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	96.97
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	96.96
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	96.8
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	96.76
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	96.61
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	96.25
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	95.84
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	95.28

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.92  E-value=1.1e-25  Score=179.35  Aligned_cols=154  Identities=27%  Similarity=0.419  Sum_probs=125.6

Q ss_pred             cCCCCchhHHHHHHHhhcCCCCCCCCCCCCCCCCCcc--cccceeCCCCCeeeeeeeeccCCcccc--ccCccccCCCCC
Q 046655           34 AAGLLSSPKLLEREALLATGWWVNNWATGNYTSYHCK--WTGVSCNSAGSVIGVSLLWYENDNITG--ELGRFKFSCFPN  109 (194)
Q Consensus        34 ~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~~~c~--~~gv~c~~~~~~~~l~~l~l~~n~l~~--~lp~~~~~~l~~  109 (194)
                      +.+.|.+||++||+++.++. .+.+|   ..+.++|.  |.||.|+......+++.+++++|++.+  .+| ..+..+++
T Consensus         3 c~~~~~~aL~~~k~~~~~~~-~l~~W---~~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~-~~l~~l~~   77 (313)
T 1ogq_A            3 CNPQDKQALLQIKKDLGNPT-TLSSW---LPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIP-SSLANLPY   77 (313)
T ss_dssp             SCHHHHHHHHHHHHHTTCCG-GGTTC---CTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECC-GGGGGCTT
T ss_pred             CCHHHHHHHHHHHHhcCCcc-cccCC---CCCCCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCcccC-hhHhCCCC
Confidence            34557889999999997654 67899   45678998  999999864322345556678888888  788 68888889


Q ss_pred             ccEEEecC-CCCCcccCCccccCCCCCCEeecCCCcccccCchhhccCcccceeecccCccCCCCccccCCCCCCCeEec
Q 046655          110 LKSFKIHS-NYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLSDNYLSGYIPPTLGRLSKLEILNL  188 (194)
Q Consensus       110 L~~L~l~~-n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~l  188 (194)
                      |++|++++ | .+.+.+|..|..+++|++|++++|++.+.+|..+..+++|++|++++|++++.+|..+..+++|++|++
T Consensus        78 L~~L~L~~~n-~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L  156 (313)
T 1ogq_A           78 LNFLYIGGIN-NLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITF  156 (313)
T ss_dssp             CSEEEEEEET-TEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEEC
T ss_pred             CCeeeCCCCC-cccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEEC
Confidence            99999985 7 788888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             cCCcC
Q 046655          189 SSNDL  193 (194)
Q Consensus       189 s~N~l  193 (194)
                      ++|++
T Consensus       157 ~~N~l  161 (313)
T 1ogq_A          157 DGNRI  161 (313)
T ss_dssp             CSSCC
T ss_pred             cCCcc
Confidence            88876

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.87  E-value=2.1e-22  Score=174.30  Aligned_cols=151  Identities=19%  Similarity=0.279  Sum_probs=127.9

Q ss_pred             CCCchhHHHHHHHhhcCCCC--------CCCCCCCCCCCCCccc---ccceeCCCCCeeeeeeeeccCCccccccCcccc
Q 046655           36 GLLSSPKLLEREALLATGWW--------VNNWATGNYTSYHCKW---TGVSCNSAGSVIGVSLLWYENDNITGELGRFKF  104 (194)
Q Consensus        36 ~~~~~~l~~~~~~~~~~~~~--------~~~w~~~~~~~~~c~~---~gv~c~~~~~~~~l~~l~l~~n~l~~~lp~~~~  104 (194)
                      ..|+.||.+++.++.++.+.        ..+|   ..+.++|.|   .||.|+..++|+.|.   ++++++.|.+| +.+
T Consensus        29 ~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W---~~~~~~c~w~~~~GV~C~~~~~V~~L~---L~~~~l~g~lp-~~l  101 (636)
T 4eco_A           29 IKDYLALKEIWDALNGKNWSQQGFGTQPGANW---NFNKELDMWGAQPGVSLNSNGRVTGLS---LEGFGASGRVP-DAI  101 (636)
T ss_dssp             HHHHHHHHHHHHHTTGGGCCCCC------CCC---CCSSCGGGTTCCTTEEECTTCCEEEEE---CTTSCCEEEEC-GGG
T ss_pred             HHHHHHHHHHHHHcCCCCcccCCcCCccCCCC---CCCCCcccccCCCCeEEcCCCCEEEEE---ecCcccCCcCC-hHH
Confidence            45688999999998766533        2369   567899999   999998777777665   49999999999 799


Q ss_pred             CCCCCccEEEecCCC-----------------------------------------------------------------
Q 046655          105 SCFPNLKSFKIHSNY-----------------------------------------------------------------  119 (194)
Q Consensus       105 ~~l~~L~~L~l~~n~-----------------------------------------------------------------  119 (194)
                      +.+++|++|++++|.                                                                 
T Consensus       102 ~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~  181 (636)
T 4eco_A          102 GQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRI  181 (636)
T ss_dssp             GGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCC
T ss_pred             hcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCcccccccccccc
Confidence            999999999998882                                                                 


Q ss_pred             ------------CCcccCCccccCCCCCCEeecCCCccccc-----------------Cchhhc--cCcccceeecccCc
Q 046655          120 ------------LLSGSIPSEIAAVSMLQTLELPSSSLTGI-----------------IPLEMG--RLRNLVHLDLSDNY  168 (194)
Q Consensus       120 ------------~l~~~~p~~~~~l~~L~~L~L~~n~l~~~-----------------~p~~~~--~l~~L~~L~L~~N~  168 (194)
                                  .++| +|..++++++|++|+|++|++++.                 +|..++  ++++|++|++++|+
T Consensus       182 ~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~  260 (636)
T 4eco_A          182 TLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCP  260 (636)
T ss_dssp             CCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCT
T ss_pred             chhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCc
Confidence                        2334 788899999999999999999985                 899988  99999999999999


Q ss_pred             cCCCCccccCCCCCCCeEeccCCc-CC
Q 046655          169 LSGYIPPTLGRLSKLEILNLSSND-LY  194 (194)
Q Consensus       169 l~g~~p~~~~~l~~L~~L~ls~N~-ls  194 (194)
                      +.|.+|..++++++|++|++++|+ ++
T Consensus       261 l~~~~p~~l~~l~~L~~L~Ls~n~~l~  287 (636)
T 4eco_A          261 NLTKLPTFLKALPEMQLINVACNRGIS  287 (636)
T ss_dssp             TCSSCCTTTTTCSSCCEEECTTCTTSC
T ss_pred             CCccChHHHhcCCCCCEEECcCCCCCc
Confidence            999999999999999999999997 53

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.85  E-value=4.9e-22  Score=175.28  Aligned_cols=147  Identities=20%  Similarity=0.290  Sum_probs=89.8

Q ss_pred             CCCCchhHHHHHHHhhcCCCCCCCCCCCCCCCCCcccccceeCCCCCeeeeeeeeccCCccccc---cCccccCCCCCcc
Q 046655           35 AGLLSSPKLLEREALLATGWWVNNWATGNYTSYHCKWTGVSCNSAGSVIGVSLLWYENDNITGE---LGRFKFSCFPNLK  111 (194)
Q Consensus        35 ~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~~~c~~~gv~c~~~~~~~~l~~l~l~~n~l~~~---lp~~~~~~l~~L~  111 (194)
                      .+.|++||++||+++.++. .+++|   ..+.++|+|.||+|+ .++|+.|   +++++.+.|.   ++ +.+..+++|+
T Consensus        10 ~~~~~~all~~k~~~~~~~-~l~~W---~~~~~~C~w~gv~C~-~~~v~~L---~L~~~~l~g~~~~l~-~~l~~L~~L~   80 (768)
T 3rgz_A           10 LYREIHQLISFKDVLPDKN-LLPDW---SSNKNPCTFDGVTCR-DDKVTSI---DLSSKPLNVGFSAVS-SSLLSLTGLE   80 (768)
T ss_dssp             HHHHHHHHHHHHTTCSCTT-SSTTC---CTTSCGGGSTTEEEE-TTEEEEE---ECTTSCCCEEHHHHH-HHTTTCTTCC
T ss_pred             CHHHHHHHHHHHhhCCCcc-cccCC---CCCCCCcCCcceEEC-CCcEEEE---ECCCCCcCCccCccC-hhHhccCccc
Confidence            3557889999999998776 78999   467799999999998 4666655   4577777766   55 4455555555


Q ss_pred             EEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCch--hhccCcccceeecccCccCCCCcccc-CCCCCCCeEec
Q 046655          112 SFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPL--EMGRLRNLVHLDLSDNYLSGYIPPTL-GRLSKLEILNL  188 (194)
Q Consensus       112 ~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~--~~~~l~~L~~L~L~~N~l~g~~p~~~-~~l~~L~~L~l  188 (194)
                      .++++.+ .+. .+|..++.+++|++|+|++|.+.|.+|.  .++.+++|++|++++|.+++..|..+ .++++|++|++
T Consensus        81 ~l~~~~~-~~~-~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L  158 (768)
T 3rgz_A           81 SLFLSNS-HIN-GSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDL  158 (768)
T ss_dssp             EEECTTS-CEE-ECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEEC
T ss_pred             ccCCcCC-CcC-CCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEEC
Confidence            5555554 332 2334455555555555555555554554  45555555555555555554444433 44455555555


Q ss_pred             cCCc
Q 046655          189 SSND  192 (194)
Q Consensus       189 s~N~  192 (194)
                      ++|.
T Consensus       159 s~n~  162 (768)
T 3rgz_A          159 SANS  162 (768)
T ss_dssp             CSSC
T ss_pred             CCCc
Confidence            5444

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.84  E-value=1.5e-21  Score=173.84  Aligned_cols=150  Identities=21%  Similarity=0.240  Sum_probs=122.5

Q ss_pred             CCCCchhHHHHHHHhhcCCCCCCCCCCCC--CCCCC--ccc------------ccceeCCCCCeeeeeeeeccCCccccc
Q 046655           35 AGLLSSPKLLEREALLATGWWVNNWATGN--YTSYH--CKW------------TGVSCNSAGSVIGVSLLWYENDNITGE   98 (194)
Q Consensus        35 ~~~~~~~l~~~~~~~~~~~~~~~~w~~~~--~~~~~--c~~------------~gv~c~~~~~~~~l~~l~l~~n~l~~~   98 (194)
                      ...|..||++||+++.++     +|....  ...++  |.|            .||.|+..++|+.|.   |+++++.|.
T Consensus       267 ~~~d~~ALl~~k~~l~~~-----~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~~~~V~~L~---Ls~~~L~G~  338 (876)
T 4ecn_A          267 YIKDYKALKAIWEALDGK-----NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGLS---LAGFGAKGR  338 (876)
T ss_dssp             HHHHHHHHHHHHHHTTGG-----GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECTTSCEEEEE---CTTTCCEEE
T ss_pred             chHHHHHHHHHHHHcCCC-----CCCcCCCcccccCCccccccccccccccCcCceEecCCCCEEEEE---CccCCCCCc
Confidence            345788999999999655     573111  12355  999            999999767777665   489999999


Q ss_pred             cCccccCCCCCccEEEe-cCCCCCccc-----------------------------------------------------
Q 046655           99 LGRFKFSCFPNLKSFKI-HSNYLLSGS-----------------------------------------------------  124 (194)
Q Consensus        99 lp~~~~~~l~~L~~L~l-~~n~~l~~~-----------------------------------------------------  124 (194)
                      +| +.++.+++|++|++ ++| .++|.                                                     
T Consensus       339 ip-~~l~~L~~L~~LdLss~N-~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~~  416 (876)
T 4ecn_A          339 VP-DAIGQLTELKVLSFGTHS-ETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKP  416 (876)
T ss_dssp             EC-GGGGGCTTCCEEESCCTT-HHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSCC
T ss_pred             Cc-hHHhccccceEeeecccc-cccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCccccc
Confidence            99 78999999999999 666 44433                                                     


Q ss_pred             -----------------------CCccccCCCCCCEeecCCCcccc-----------------cCchhhc--cCccccee
Q 046655          125 -----------------------IPSEIAAVSMLQTLELPSSSLTG-----------------IIPLEMG--RLRNLVHL  162 (194)
Q Consensus       125 -----------------------~p~~~~~l~~L~~L~L~~n~l~~-----------------~~p~~~~--~l~~L~~L  162 (194)
                                             +|..++++++|+.|+|++|++++                 .+|..++  ++++|++|
T Consensus       417 i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L  496 (876)
T 4ecn_A          417 IKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDV  496 (876)
T ss_dssp             CCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEE
T ss_pred             cccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEE
Confidence                                   78888899999999999999997                 3888877  99999999


Q ss_pred             ecccCccCCCCccccCCCCCCCeEeccCCc-CC
Q 046655          163 DLSDNYLSGYIPPTLGRLSKLEILNLSSND-LY  194 (194)
Q Consensus       163 ~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~-ls  194 (194)
                      ++++|++.|.+|..++++++|++|++++|+ ++
T Consensus       497 ~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~ls  529 (876)
T 4ecn_A          497 ELYNCPNMTQLPDFLYDLPELQSLNIACNRGIS  529 (876)
T ss_dssp             EEESCTTCCSCCGGGGGCSSCCEEECTTCTTSC
T ss_pred             ECcCCCCCccChHHHhCCCCCCEEECcCCCCcc
Confidence            999999999999999999999999999997 53

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.80  E-value=4.9e-21  Score=153.43  Aligned_cols=157  Identities=18%  Similarity=0.266  Sum_probs=84.5

Q ss_pred             hccCCCCchhHHHHHHHhhcCC-CCCCCCC-CCCCCCCCcccccceeCC---------CCCeee----------------
Q 046655           32 ASAAGLLSSPKLLEREALLATG-WWVNNWA-TGNYTSYHCKWTGVSCNS---------AGSVIG----------------   84 (194)
Q Consensus        32 ~~~~~~~~~~l~~~~~~~~~~~-~~~~~w~-~~~~~~~~c~~~gv~c~~---------~~~~~~----------------   84 (194)
                      .....++..+|.+||..+..++ .+...|. ......++|.|.|+.|..         ..+++.                
T Consensus        22 ~~~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~~lp~~l~  101 (328)
T 4fcg_A           22 STALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLPQFPDQAF  101 (328)
T ss_dssp             -CCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCSSCCSCGG
T ss_pred             cccCchHHHHHHHHHHhccCCchhhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCCCchhcChhhh
Confidence            3445566889999999885444 5556772 012357899999999952         123322                


Q ss_pred             ----eeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchhhcc-----
Q 046655           85 ----VSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGR-----  155 (194)
Q Consensus        85 ----l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~-----  155 (194)
                          |+.+++++|++. .+| ..+..+++|++|++++| .++ .+|..+..+++|++|++++|++.+.+|..+..     
T Consensus       102 ~l~~L~~L~L~~n~l~-~lp-~~~~~l~~L~~L~Ls~n-~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~  177 (328)
T 4fcg_A          102 RLSHLQHMTIDAAGLM-ELP-DTMQQFAGLETLTLARN-PLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASG  177 (328)
T ss_dssp             GGTTCSEEEEESSCCC-CCC-SCGGGGTTCSEEEEESC-CCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CC
T ss_pred             hCCCCCEEECCCCCcc-chh-HHHhccCCCCEEECCCC-ccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchh
Confidence                223444444444 444 34444444455555444 444 34444444555555555554444444444332     


Q ss_pred             ----CcccceeecccCccCCCCccccCCCCCCCeEeccCCcC
Q 046655          156 ----LRNLVHLDLSDNYLSGYIPPTLGRLSKLEILNLSSNDL  193 (194)
Q Consensus       156 ----l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l  193 (194)
                          +++|++|++++|+++ .+|..++++++|++|++++|.+
T Consensus       178 ~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l  218 (328)
T 4fcg_A          178 EHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPL  218 (328)
T ss_dssp             CEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCC
T ss_pred             hhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCC
Confidence                455555555555555 4555555555666666665554

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.79  E-value=1.1e-18  Score=133.01  Aligned_cols=128  Identities=27%  Similarity=0.342  Sum_probs=86.7

Q ss_pred             CCCCCCcccccceeCCC-------CCeeeeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCC
Q 046655           63 NYTSYHCKWTGVSCNSA-------GSVIGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSML  135 (194)
Q Consensus        63 ~~~~~~c~~~gv~c~~~-------~~~~~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L  135 (194)
                      ..+...|+|.+|.|...       +-...++.+++++|++.+..| ..+..+++|++|++++| .+....+..|..+++|
T Consensus        13 ~~~~~~Cs~~~v~c~~~~l~~ip~~~~~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~L~~N-~l~~i~~~~~~~l~~L   90 (229)
T 3e6j_A           13 CPSQCSCSGTTVDCRSKRHASVPAGIPTNAQILYLHDNQITKLEP-GVFDSLINLKELYLGSN-QLGALPVGVFDSLTQL   90 (229)
T ss_dssp             CCTTCEEETTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCT-TTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTC
T ss_pred             CCCCCEEeCCEeEccCCCcCccCCCCCCCCCEEEcCCCccCccCH-HHhhCccCCcEEECCCC-CCCCcChhhcccCCCc
Confidence            35788999999999731       122445667778888774444 56777777777777777 6664444556677777


Q ss_pred             CEeecCCCcccccCchhhccCcccceeecccCccCCCCccccCCCCCCCeEeccCCcC
Q 046655          136 QTLELPSSSLTGIIPLEMGRLRNLVHLDLSDNYLSGYIPPTLGRLSKLEILNLSSNDL  193 (194)
Q Consensus       136 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l  193 (194)
                      ++|+|++|++++..+..|..+++|+.|++++|+++ .+|..+..+++|++|++++|+|
T Consensus        91 ~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l  147 (229)
T 3e6j_A           91 TVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQL  147 (229)
T ss_dssp             CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCC
T ss_pred             CEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcC
Confidence            77777777777544445666777777777777776 5666666666666666666655

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.76  E-value=3.2e-18  Score=127.02  Aligned_cols=128  Identities=26%  Similarity=0.401  Sum_probs=109.6

Q ss_pred             CCCCcccccceeCCC--CC-----eeeeeeeeccCCccccccCcc-ccCCCCCccEEEecCCCCCcccCCccccCCCCCC
Q 046655           65 TSYHCKWTGVSCNSA--GS-----VIGVSLLWYENDNITGELGRF-KFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQ  136 (194)
Q Consensus        65 ~~~~c~~~gv~c~~~--~~-----~~~l~~l~l~~n~l~~~lp~~-~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~  136 (194)
                      ....|.|..+.|...  ..     ...++.+++++|++. .++.. .+..+++|++|++++| .+++..|..|..+++|+
T Consensus         4 ~~C~C~~~~l~~s~~~l~~ip~~~~~~l~~L~l~~n~i~-~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~   81 (192)
T 1w8a_A            4 AMCHCEGTTVDCTGRGLKEIPRDIPLHTTELLLNDNELG-RISSDGLFGRLPHLVKLELKRN-QLTGIEPNAFEGASHIQ   81 (192)
T ss_dssp             TTSEEETTEEECTTSCCSSCCSCCCTTCSEEECCSCCCC-SBCCSCSGGGCTTCCEEECCSS-CCCCBCTTTTTTCTTCC
T ss_pred             CCCEECCCEEEcCCCCcCcCccCCCCCCCEEECCCCcCC-ccCCccccccCCCCCEEECCCC-CCCCcCHhHcCCcccCC
Confidence            345578888888631  11     125667899999999 55523 4889999999999999 99988899999999999


Q ss_pred             EeecCCCcccccCchhhccCcccceeecccCccCCCCccccCCCCCCCeEeccCCcCC
Q 046655          137 TLELPSSSLTGIIPLEMGRLRNLVHLDLSDNYLSGYIPPTLGRLSKLEILNLSSNDLY  194 (194)
Q Consensus       137 ~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~ls  194 (194)
                      +|+|++|++++..|..|.++++|++|++++|++++..|..+..+++|++|++++|+++
T Consensus        82 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  139 (192)
T 1w8a_A           82 ELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             EEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred             EEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence            9999999999888888999999999999999999988999999999999999999874

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.75  E-value=1.3e-17  Score=121.93  Aligned_cols=127  Identities=21%  Similarity=0.262  Sum_probs=105.8

Q ss_pred             CCCcccccceeCCC-------CCeeeeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEe
Q 046655           66 SYHCKWTGVSCNSA-------GSVIGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTL  138 (194)
Q Consensus        66 ~~~c~~~gv~c~~~-------~~~~~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L  138 (194)
                      ...|.|.++.|...       +....++.+++++|++. .++...+..+++|++|++++| .+++..+..+..+++|++|
T Consensus         4 ~C~C~~~~l~~~~~~l~~~p~~~~~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L   81 (177)
T 2o6r_A            4 RCSCSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSQN-QIQSLPDGVFDKLTKLTIL   81 (177)
T ss_dssp             TCEEETTEEECCSSCCSSCCTTCCTTCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEE
T ss_pred             CCEeCCCEEEecCCCCccCCCCCCCCCcEEEeCCCccc-EeCHHHhcCcccccEEECCCC-cceEeChhHccCCCccCEE
Confidence            44688999999731       12346777999999999 666466889999999999999 8887666668999999999


Q ss_pred             ecCCCcccccCchhhccCcccceeecccCccCCCCccccCCCCCCCeEeccCCcCC
Q 046655          139 ELPSSSLTGIIPLEMGRLRNLVHLDLSDNYLSGYIPPTLGRLSKLEILNLSSNDLY  194 (194)
Q Consensus       139 ~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~ls  194 (194)
                      ++++|++++..+..+..+++|++|++++|++++..+..+..+++|++|++++|+++
T Consensus        82 ~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  137 (177)
T 2o6r_A           82 YLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD  137 (177)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             ECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCee
Confidence            99999999666666889999999999999999655555788999999999999874

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.74  E-value=1.6e-17  Score=124.32  Aligned_cols=125  Identities=23%  Similarity=0.291  Sum_probs=61.2

Q ss_pred             CCcccccceeCCCC-------CeeeeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEee
Q 046655           67 YHCKWTGVSCNSAG-------SVIGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLE  139 (194)
Q Consensus        67 ~~c~~~gv~c~~~~-------~~~~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~  139 (194)
                      ..|.|.++.|...+       ....++.+++++|+++ .++...+..+++|++|++++| .+++..+..|..+++|++|+
T Consensus         5 C~C~~~~v~c~~~~l~~~p~~~~~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~   82 (208)
T 2o6s_A            5 CSCSGTTVECYSQGRTSVPTGIPAQTTYLDLETNSLK-SLPNGVFDELTSLTQLYLGGN-KLQSLPNGVFNKLTSLTYLN   82 (208)
T ss_dssp             CEEETTEEECCSSCCSSCCSCCCTTCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEE
T ss_pred             CEECCCEEEecCCCccCCCCCCCCCCcEEEcCCCccC-cCChhhhcccccCcEEECCCC-ccCccChhhcCCCCCcCEEE
Confidence            34566666664211       1123444555555555 333234455555555555555 45533333345555555555


Q ss_pred             cCCCcccccCchhhccCcccceeecccCccCCCCccccCCCCCCCeEeccCCcC
Q 046655          140 LPSSSLTGIIPLEMGRLRNLVHLDLSDNYLSGYIPPTLGRLSKLEILNLSSNDL  193 (194)
Q Consensus       140 L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l  193 (194)
                      +++|++++..+..+..+++|++|++++|++++..+..+..+++|++|++++|.+
T Consensus        83 Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l  136 (208)
T 2o6s_A           83 LSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQL  136 (208)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             CCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCcc
Confidence            555555533333344555555555555555533333344555555555555543

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.74  E-value=1.6e-17  Score=125.84  Aligned_cols=114  Identities=20%  Similarity=0.182  Sum_probs=60.0

Q ss_pred             CCCCeeeeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchhhccCc
Q 046655           78 SAGSVIGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLR  157 (194)
Q Consensus        78 ~~~~~~~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~  157 (194)
                      .+..+..|+.+++++|++.+..| ..|..+++|++|++++| .++...+..|..+++|++|+|++|++.+..|..|..++
T Consensus        51 ~~~~l~~L~~L~Ls~N~i~~~~~-~~~~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~  128 (220)
T 2v9t_B           51 AFSPYKKLRRIDLSNNQISELAP-DAFQGLRSLNSLVLYGN-KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLH  128 (220)
T ss_dssp             SSTTCTTCCEEECCSSCCCEECT-TTTTTCSSCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred             HhhCCCCCCEEECCCCcCCCcCH-HHhhCCcCCCEEECCCC-cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCC
Confidence            34444445555555555552223 45555555555555555 55533333345555555555555555544455555555


Q ss_pred             ccceeecccCccCCCCccccCCCCCCCeEeccCCcC
Q 046655          158 NLVHLDLSDNYLSGYIPPTLGRLSKLEILNLSSNDL  193 (194)
Q Consensus       158 ~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l  193 (194)
                      +|+.|++++|++++..+..|..+++|+.|++++|++
T Consensus       129 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~  164 (220)
T 2v9t_B          129 NLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF  164 (220)
T ss_dssp             TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred             CCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence            555555555555544444455555566666655554

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.73  E-value=1e-17  Score=126.85  Aligned_cols=113  Identities=22%  Similarity=0.245  Sum_probs=89.3

Q ss_pred             CCCeeeeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchhhccCcc
Q 046655           79 AGSVIGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRN  158 (194)
Q Consensus        79 ~~~~~~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~  158 (194)
                      +..++.|+.+++++|+++ .++...|..+++|++|++++| .+++..+..|..+++|++|+|++|++.+..|..|..+++
T Consensus        53 ~~~l~~L~~L~L~~N~i~-~i~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~  130 (220)
T 2v70_A           53 FKKLPQLRKINFSNNKIT-DIEEGAFEGASGVNEILLTSN-RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSS  130 (220)
T ss_dssp             GGGCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSS-CCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTT
T ss_pred             hccCCCCCEEECCCCcCC-EECHHHhCCCCCCCEEECCCC-ccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCcc
Confidence            456667777888888888 555357788888888888888 777666666788888888888888888777777888888


Q ss_pred             cceeecccCccCCCCccccCCCCCCCeEeccCCcC
Q 046655          159 LVHLDLSDNYLSGYIPPTLGRLSKLEILNLSSNDL  193 (194)
Q Consensus       159 L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l  193 (194)
                      |+.|++++|++++..|..|..+++|+.|++++|++
T Consensus       131 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l  165 (220)
T 2v70_A          131 VRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPF  165 (220)
T ss_dssp             CSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCE
T ss_pred             CCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCC
Confidence            88888888888877777888888888888888875

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.73  E-value=4.4e-18  Score=150.08  Aligned_cols=88  Identities=39%  Similarity=0.564  Sum_probs=77.8

Q ss_pred             CCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchhhccCcccceeecccCccCCCCccccCCCCCCCe
Q 046655          106 CFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLSDNYLSGYIPPTLGRLSKLEI  185 (194)
Q Consensus       106 ~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~  185 (194)
                      .++.|++||+++| .++|.+|..++.+++|+.|+|++|+++|.+|..++.+++|+.||+++|+++|.+|..+..+++|++
T Consensus       630 ~l~~L~~LdLs~N-~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~  708 (768)
T 3rgz_A          630 NNGSMMFLDMSYN-MLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTE  708 (768)
T ss_dssp             SSBCCCEEECCSS-CCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSE
T ss_pred             ccccccEEECcCC-cccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCE
Confidence            3567888899998 888889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeccCCcCC
Q 046655          186 LNLSSNDLY  194 (194)
Q Consensus       186 L~ls~N~ls  194 (194)
                      |++++|+++
T Consensus       709 L~ls~N~l~  717 (768)
T 3rgz_A          709 IDLSNNNLS  717 (768)
T ss_dssp             EECCSSEEE
T ss_pred             EECcCCccc
Confidence            999998763

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.73  E-value=2.8e-17  Score=124.50  Aligned_cols=130  Identities=19%  Similarity=0.222  Sum_probs=108.9

Q ss_pred             CCCCCcccccceeCCC--CCe-----eeeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCC
Q 046655           64 YTSYHCKWTGVSCNSA--GSV-----IGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQ  136 (194)
Q Consensus        64 ~~~~~c~~~gv~c~~~--~~~-----~~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~  136 (194)
                      +....|.|..+.|...  ..+     ..++.+++++|++++..+...+..+++|++|++++| .+++..+..|..+++|+
T Consensus         6 P~~C~C~~~~l~~s~n~l~~iP~~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~   84 (220)
T 2v70_A            6 PEKCRCEGTTVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNN-KITDIEEGAFEGASGVN   84 (220)
T ss_dssp             CTTCEEETTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSS-CCCEECTTTTTTCTTCC
T ss_pred             CCCCEECCCEeEeCCCCcccCccCCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCC-cCCEECHHHhCCCCCCC
Confidence            3445678888888631  111     234568899999994445345889999999999999 89987777899999999


Q ss_pred             EeecCCCcccccCchhhccCcccceeecccCccCCCCccccCCCCCCCeEeccCCcCC
Q 046655          137 TLELPSSSLTGIIPLEMGRLRNLVHLDLSDNYLSGYIPPTLGRLSKLEILNLSSNDLY  194 (194)
Q Consensus       137 ~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~ls  194 (194)
                      +|+|++|++++..|..|..+++|++|++++|++++..|..|..+++|++|++++|+|+
T Consensus        85 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  142 (220)
T 2v70_A           85 EILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQIT  142 (220)
T ss_dssp             EEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCC
T ss_pred             EEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCC
Confidence            9999999999777778999999999999999999888999999999999999999874

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.73  E-value=2.4e-17  Score=122.48  Aligned_cols=126  Identities=25%  Similarity=0.304  Sum_probs=107.0

Q ss_pred             CCCCcccccceeCCC-------CCeeeeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCE
Q 046655           65 TSYHCKWTGVSCNSA-------GSVIGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQT  137 (194)
Q Consensus        65 ~~~~c~~~gv~c~~~-------~~~~~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~  137 (194)
                      ....|.+..+.|...       +-...++.+++++|+++ .+| ..+..+++|++|++++| .+++..+..|..+++|++
T Consensus         6 ~~C~C~~~~l~~~~~~l~~ip~~~~~~l~~L~L~~n~i~-~ip-~~~~~l~~L~~L~Ls~N-~i~~i~~~~f~~l~~L~~   82 (193)
T 2wfh_A            6 TECTCLDTVVRCSNKGLKVLPKGIPRDVTELYLDGNQFT-LVP-KELSNYKHLTLIDLSNN-RISTLSNQSFSNMTQLLT   82 (193)
T ss_dssp             TTCEEETTEEECTTSCCSSCCSCCCTTCCEEECCSSCCC-SCC-GGGGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCE
T ss_pred             CCCEeCCCEEEcCCCCCCcCCCCCCCCCCEEECCCCcCc-hhH-HHhhcccCCCEEECCCC-cCCEeCHhHccCCCCCCE
Confidence            344566777777521       11235667899999999 999 78999999999999999 899877788999999999


Q ss_pred             eecCCCcccccCchhhccCcccceeecccCccCCCCccccCCCCCCCeEeccCCcC
Q 046655          138 LELPSSSLTGIIPLEMGRLRNLVHLDLSDNYLSGYIPPTLGRLSKLEILNLSSNDL  193 (194)
Q Consensus       138 L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l  193 (194)
                      |+|++|++++..|..|..+++|+.|++++|++++..+..|..+++|+.|++++|++
T Consensus        83 L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~  138 (193)
T 2wfh_A           83 LILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL  138 (193)
T ss_dssp             EECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred             EECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCe
Confidence            99999999987777899999999999999999965555689999999999999986

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.73  E-value=2.3e-17  Score=125.00  Aligned_cols=129  Identities=21%  Similarity=0.271  Sum_probs=109.6

Q ss_pred             CCCCCcccccceeCCCC--C-----eeeeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCC
Q 046655           64 YTSYHCKWTGVSCNSAG--S-----VIGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQ  136 (194)
Q Consensus        64 ~~~~~c~~~gv~c~~~~--~-----~~~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~  136 (194)
                      +....|.|..+.|...+  .     -..++.+++++|++. .++...|..+++|++|++++| .+++..|..|..+++|+
T Consensus         6 P~~C~C~~~~v~c~~~~l~~iP~~l~~~l~~L~l~~n~i~-~i~~~~~~~l~~L~~L~Ls~N-~i~~~~~~~~~~l~~L~   83 (220)
T 2v9t_B            6 PAACTCSNNIVDCRGKGLTEIPTNLPETITEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNN-QISELAPDAFQGLRSLN   83 (220)
T ss_dssp             CTTSEEETTEEECTTSCCSSCCSSCCTTCCEEECCSSCCC-EECTTSSTTCTTCCEEECCSS-CCCEECTTTTTTCSSCC
T ss_pred             CCCCEECCCEEEcCCCCcCcCCCccCcCCCEEECCCCcCC-CcCHhHhhCCCCCCEEECCCC-cCCCcCHHHhhCCcCCC
Confidence            34456788888886311  1     135677899999999 666468999999999999999 89988899999999999


Q ss_pred             EeecCCCcccccCchhhccCcccceeecccCccCCCCccccCCCCCCCeEeccCCcCC
Q 046655          137 TLELPSSSLTGIIPLEMGRLRNLVHLDLSDNYLSGYIPPTLGRLSKLEILNLSSNDLY  194 (194)
Q Consensus       137 ~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~ls  194 (194)
                      +|+|++|+++...+..|.++++|+.|++++|++++..|..|..+++|++|++++|+|+
T Consensus        84 ~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  141 (220)
T 2v9t_B           84 SLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQ  141 (220)
T ss_dssp             EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred             EEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCC
Confidence            9999999999544455789999999999999999888889999999999999999874

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.72  E-value=4.5e-17  Score=124.05  Aligned_cols=125  Identities=22%  Similarity=0.236  Sum_probs=110.5

Q ss_pred             CCcccccceeCCCCCeeeeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCccc
Q 046655           67 YHCKWTGVSCNSAGSVIGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLT  146 (194)
Q Consensus        67 ~~c~~~gv~c~~~~~~~~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~  146 (194)
                      ..+...++....+..+..|+.+++++|++. .++...|..+++|++|++++| .+++..+..|..+++|++|++++|+++
T Consensus        48 s~n~i~~~~~~~~~~l~~L~~L~L~~N~l~-~i~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~Ls~N~l~  125 (229)
T 3e6j_A           48 HDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLDLGTN-QLTVLPSAVFDRLVHLKELFMCCNKLT  125 (229)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             CCCccCccCHHHhhCccCCcEEECCCCCCC-CcChhhcccCCCcCEEECCCC-cCCccChhHhCcchhhCeEeccCCccc
Confidence            456677776777788899999999999998 777566889999999999999 898766677899999999999999999


Q ss_pred             ccCchhhccCcccceeecccCccCCCCccccCCCCCCCeEeccCCcCC
Q 046655          147 GIIPLEMGRLRNLVHLDLSDNYLSGYIPPTLGRLSKLEILNLSSNDLY  194 (194)
Q Consensus       147 ~~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~ls  194 (194)
                       .+|..+..+++|+.|++++|++++..+..+..+++|+.|++++|+++
T Consensus       126 -~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  172 (229)
T 3e6j_A          126 -ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD  172 (229)
T ss_dssp             -SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred             -ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence             88999999999999999999999665567999999999999999874

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.71  E-value=6e-17  Score=126.01  Aligned_cols=105  Identities=23%  Similarity=0.278  Sum_probs=50.1

Q ss_pred             eeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchhhccCcccceeecc
Q 046655           86 SLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLS  165 (194)
Q Consensus        86 ~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~  165 (194)
                      +.+++++|++. .++...+..+++|++|++++| .++...+..|..+++|++|++++|++.+..+..|..+++|++|+++
T Consensus        40 ~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n-~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  117 (270)
T 2o6q_A           40 KKLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDN-KLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLD  117 (270)
T ss_dssp             SEEECCSSCCS-CCCTTSSSSCTTCCEEECCSS-CCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECC
T ss_pred             CEEECcCCCCC-eeCHHHhcCCCCCCEEECCCC-ccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECC
Confidence            33555555555 333234555555555555555 4443333333445555555555555553333334444455555555


Q ss_pred             cCccCCCCccccCCCCCCCeEeccCCc
Q 046655          166 DNYLSGYIPPTLGRLSKLEILNLSSND  192 (194)
Q Consensus       166 ~N~l~g~~p~~~~~l~~L~~L~ls~N~  192 (194)
                      +|++++..+..|..+++|++|++++|.
T Consensus       118 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~  144 (270)
T 2o6q_A          118 RNQLKSLPPRVFDSLTKLTYLSLGYNE  144 (270)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CCccCeeCHHHhCcCcCCCEEECCCCc
Confidence            555443333334444444444444443

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.71  E-value=9.5e-17  Score=123.61  Aligned_cols=122  Identities=22%  Similarity=0.272  Sum_probs=77.2

Q ss_pred             ccccceeCCCCCeeeeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccC
Q 046655           70 KWTGVSCNSAGSVIGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGII  149 (194)
Q Consensus        70 ~~~gv~c~~~~~~~~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~  149 (194)
                      .+.++....+..+..|+.+++++|+++ .++...+..+++|++|++++| .+++..+..|..+++|++|+|++|++++..
T Consensus        70 ~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~  147 (251)
T 3m19_A           70 QLQTLSAGVFDDLTELGTLGLANNQLA-SLPLGVFDHLTQLDKLYLGGN-QLKSLPSGVFDRLTKLKELRLNTNQLQSIP  147 (251)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred             cCCccCHhHhccCCcCCEEECCCCccc-ccChhHhcccCCCCEEEcCCC-cCCCcChhHhccCCcccEEECcCCcCCccC
Confidence            344444444455666666666666666 444345566666777777777 666544444566777777777777776444


Q ss_pred             chhhccCcccceeecccCccCCCCccccCCCCCCCeEeccCCcC
Q 046655          150 PLEMGRLRNLVHLDLSDNYLSGYIPPTLGRLSKLEILNLSSNDL  193 (194)
Q Consensus       150 p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l  193 (194)
                      +..|..+++|++|++++|++++..+..+..+++|++|++++|++
T Consensus       148 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~  191 (251)
T 3m19_A          148 AGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQF  191 (251)
T ss_dssp             TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCB
T ss_pred             HHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCce
Confidence            44566777777777777777755555666777777777777765

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.70  E-value=1.1e-16  Score=123.36  Aligned_cols=126  Identities=19%  Similarity=0.210  Sum_probs=105.9

Q ss_pred             CCcccccceeCCCCCeeeeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCccc
Q 046655           67 YHCKWTGVSCNSAGSVIGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLT  146 (194)
Q Consensus        67 ~~c~~~gv~c~~~~~~~~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~  146 (194)
                      ..+...++....+..+.+|+.+++++|++.+..+ ..+..+++|++|++++| .+++..+..|..+++|++|++++|+++
T Consensus        43 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~  120 (251)
T 3m19_A           43 QSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSA-GVFDDLTELGTLGLANN-QLASLPLGVFDHLTQLDKLYLGGNQLK  120 (251)
T ss_dssp             TTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCT-TTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             cCCCcCccCHhHhcCcccCCEEECCCCcCCccCH-hHhccCCcCCEEECCCC-cccccChhHhcccCCCCEEEcCCCcCC
Confidence            4455666666667788899999999999995444 67889999999999999 888776777889999999999999999


Q ss_pred             ccCchhhccCcccceeecccCccCCCCccccCCCCCCCeEeccCCcCC
Q 046655          147 GIIPLEMGRLRNLVHLDLSDNYLSGYIPPTLGRLSKLEILNLSSNDLY  194 (194)
Q Consensus       147 ~~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~ls  194 (194)
                      +..+..|..+++|+.|++++|++++..+..|..+++|++|++++|+++
T Consensus       121 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  168 (251)
T 3m19_A          121 SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ  168 (251)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred             CcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCC
Confidence            665566789999999999999999666667999999999999999874

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.70  E-value=7.8e-18  Score=133.86  Aligned_cols=116  Identities=26%  Similarity=0.443  Sum_probs=103.3

Q ss_pred             eCCCCCeeeeeeeeccC-CccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchhhc
Q 046655           76 CNSAGSVIGVSLLWYEN-DNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMG  154 (194)
Q Consensus        76 c~~~~~~~~l~~l~l~~-n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~  154 (194)
                      ....+.++.|+.+++++ |++.+.+| ..+..+++|++|++++| .+++.+|..+..+++|++|++++|.+.+.+|..+.
T Consensus        69 ~~~l~~l~~L~~L~L~~~n~l~~~~p-~~l~~l~~L~~L~Ls~n-~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~  146 (313)
T 1ogq_A           69 PSSLANLPYLNFLYIGGINNLVGPIP-PAIAKLTQLHYLYITHT-NVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS  146 (313)
T ss_dssp             CGGGGGCTTCSEEEEEEETTEESCCC-GGGGGCTTCSEEEEEEE-CCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGG
T ss_pred             ChhHhCCCCCCeeeCCCCCcccccCC-hhHhcCCCCCEEECcCC-eeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHh
Confidence            33456677888899995 99998888 78999999999999999 88888999999999999999999999989999999


Q ss_pred             cCcccceeecccCccCCCCccccCCCC-CCCeEeccCCcC
Q 046655          155 RLRNLVHLDLSDNYLSGYIPPTLGRLS-KLEILNLSSNDL  193 (194)
Q Consensus       155 ~l~~L~~L~L~~N~l~g~~p~~~~~l~-~L~~L~ls~N~l  193 (194)
                      .+++|++|++++|+++|.+|..+..++ +|++|++++|.+
T Consensus       147 ~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l  186 (313)
T 1ogq_A          147 SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRL  186 (313)
T ss_dssp             GCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEE
T ss_pred             cCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCee
Confidence            999999999999999988999999988 899999999875

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.69  E-value=2e-16  Score=118.35  Aligned_cols=126  Identities=17%  Similarity=0.206  Sum_probs=106.6

Q ss_pred             CCcccccceeCCCCCeeeeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCccc
Q 046655           67 YHCKWTGVSCNSAGSVIGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLT  146 (194)
Q Consensus        67 ~~c~~~gv~c~~~~~~~~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~  146 (194)
                      ..+...++....++.+..|+.+++++|+++ .++...+..+++|++|++++| .+++..+..+..+++|++|++++|+++
T Consensus        36 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~  113 (208)
T 2o6s_A           36 ETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTN-QLQSLPNGVFDKLTQLKELALNTNQLQ  113 (208)
T ss_dssp             CSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             CCCccCcCChhhhcccccCcEEECCCCccC-ccChhhcCCCCCcCEEECCCC-cCCccCHhHhcCccCCCEEEcCCCcCc
Confidence            344555555555678889999999999999 666466789999999999999 888766666899999999999999999


Q ss_pred             ccCchhhccCcccceeecccCccCCCCccccCCCCCCCeEeccCCcCC
Q 046655          147 GIIPLEMGRLRNLVHLDLSDNYLSGYIPPTLGRLSKLEILNLSSNDLY  194 (194)
Q Consensus       147 ~~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~ls  194 (194)
                      +..+..+..+++|+.|++++|++++..+..+..+++|++|++++|++.
T Consensus       114 ~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  161 (208)
T 2o6s_A          114 SLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD  161 (208)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred             ccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee
Confidence            666666899999999999999999766666899999999999999763

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.68  E-value=2.8e-16  Score=122.40  Aligned_cols=122  Identities=18%  Similarity=0.204  Sum_probs=81.0

Q ss_pred             ccccceeCCCCCeeeeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccC
Q 046655           70 KWTGVSCNSAGSVIGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGII  149 (194)
Q Consensus        70 ~~~gv~c~~~~~~~~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~  149 (194)
                      .+.++....++.+..|+.+++++|++. .++...+..+++|++|++++| .+++..+..+..+++|++|++++|++++..
T Consensus        96 ~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  173 (272)
T 3rfs_A           96 QLQSLPNGVFDKLTNLKELVLVENQLQ-SLPDGVFDKLTNLTYLNLAHN-QLQSLPKGVFDKLTNLTELDLSYNQLQSLP  173 (272)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred             ccCccChhHhcCCcCCCEEECCCCcCC-ccCHHHhccCCCCCEEECCCC-ccCccCHHHhccCccCCEEECCCCCcCccC
Confidence            344444444456666666777777777 444245666777777777777 666555555667777777777777777555


Q ss_pred             chhhccCcccceeecccCccCCCCccccCCCCCCCeEeccCCcC
Q 046655          150 PLEMGRLRNLVHLDLSDNYLSGYIPPTLGRLSKLEILNLSSNDL  193 (194)
Q Consensus       150 p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l  193 (194)
                      +..+..+++|+.|++++|++++..|..+..+++|++|++++|++
T Consensus       174 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~  217 (272)
T 3rfs_A          174 EGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPW  217 (272)
T ss_dssp             TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred             HHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCc
Confidence            55567777777777777777765555567777777777777765

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.67  E-value=4.4e-16  Score=113.38  Aligned_cols=102  Identities=18%  Similarity=0.193  Sum_probs=86.9

Q ss_pred             eeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchhhccCcccceeecccC
Q 046655           88 LWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLSDN  167 (194)
Q Consensus        88 l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N  167 (194)
                      +++++|+++ .+| ..+  .+.+++|++++| .+++..|..|..+++|++|+|++|++++..+..|..+++|++|++++|
T Consensus        14 l~~s~n~l~-~ip-~~~--~~~l~~L~L~~N-~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N   88 (170)
T 3g39_A           14 VDCSGKSLA-SVP-TGI--PTTTQVLYLYDN-QITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN   88 (170)
T ss_dssp             EECTTSCCS-SCC-SCC--CTTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             EEeCCCCcC-ccC-ccC--CCCCcEEEcCCC-cCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence            455777777 788 444  378999999999 899877888999999999999999999666666889999999999999


Q ss_pred             ccCCCCccccCCCCCCCeEeccCCcCC
Q 046655          168 YLSGYIPPTLGRLSKLEILNLSSNDLY  194 (194)
Q Consensus       168 ~l~g~~p~~~~~l~~L~~L~ls~N~ls  194 (194)
                      ++++..+..|..+++|++|++++|+++
T Consensus        89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~  115 (170)
T 3g39_A           89 QLKSIPRGAFDNLKSLTHIWLLNNPWD  115 (170)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             ccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence            999765666999999999999999874

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.66  E-value=4.8e-16  Score=133.02  Aligned_cols=108  Identities=20%  Similarity=0.272  Sum_probs=83.4

Q ss_pred             eeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchhhccCcccceee
Q 046655           84 GVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLD  163 (194)
Q Consensus        84 ~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~  163 (194)
                      .++.|++++|+|+ .++...|..+++|++|++++| .+++..+..|.++++|++|+|++|++++..+..|.++++|++|+
T Consensus        53 ~~~~LdLs~N~i~-~l~~~~f~~l~~L~~L~Ls~N-~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~  130 (635)
T 4g8a_A           53 STKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV  130 (635)
T ss_dssp             TCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEE
T ss_pred             CCCEEEeeCCCCC-CCCHHHHhCCCCCCEEECCCC-cCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEE
Confidence            4566888888888 666567888888888888888 77766666788888888888888888865556678888888888


Q ss_pred             cccCccCCCCccccCCCCCCCeEeccCCcC
Q 046655          164 LSDNYLSGYIPPTLGRLSKLEILNLSSNDL  193 (194)
Q Consensus       164 L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l  193 (194)
                      +++|++++..+..|+++++|++|++++|.+
T Consensus       131 Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l  160 (635)
T 4g8a_A          131 AVETNLASLENFPIGHLKTLKELNVAHNLI  160 (635)
T ss_dssp             CTTSCCCCSTTCCCTTCTTCCEEECCSSCC
T ss_pred             CCCCcCCCCChhhhhcCcccCeeccccCcc
Confidence            888888865555677888888888888765

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.65  E-value=3.5e-16  Score=111.04  Aligned_cols=107  Identities=23%  Similarity=0.299  Sum_probs=55.6

Q ss_pred             eeeeeeeccCCccc-cccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchhhccCcccce
Q 046655           83 IGVSLLWYENDNIT-GELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVH  161 (194)
Q Consensus        83 ~~l~~l~l~~n~l~-~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~  161 (194)
                      ..++.+++++|++. +.+| ..+..+++|++|++++| .+++.  ..+..+++|++|++++|.+++.+|..+..+++|++
T Consensus        17 ~~l~~L~l~~n~l~~~~~~-~~~~~l~~L~~L~l~~n-~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~   92 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLE-GLTDEFEELEFLSTINV-GLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH   92 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCC-SCCTTCTTCCEEECTTS-CCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred             ccCeEEEccCCcCChhHHH-HHHhhcCCCcEEECcCC-CCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence            33444455555555 4555 34455555555555555 44432  44555555555555555555445555555555555


Q ss_pred             eecccCccCCC-CccccCCCCCCCeEeccCCcC
Q 046655          162 LDLSDNYLSGY-IPPTLGRLSKLEILNLSSNDL  193 (194)
Q Consensus       162 L~L~~N~l~g~-~p~~~~~l~~L~~L~ls~N~l  193 (194)
                      |++++|++++. .+..+..+++|++|++++|++
T Consensus        93 L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l  125 (149)
T 2je0_A           93 LNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEV  125 (149)
T ss_dssp             EECTTSCCCSHHHHGGGGGCTTCCEEECTTCGG
T ss_pred             EECCCCcCCChHHHHHHhhCCCCCEEeCcCCcc
Confidence            55555555531 224455555555555555544

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.65  E-value=8.7e-16  Score=112.28  Aligned_cols=104  Identities=22%  Similarity=0.249  Sum_probs=88.9

Q ss_pred             eeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchhhccCcccceeecc
Q 046655           86 SLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLS  165 (194)
Q Consensus        86 ~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~  165 (194)
                      ..+++++|++. .+| ..+.  +.|++|++++| .+++..|..|..+++|++|+|++|++++..+..|..+++|+.|+++
T Consensus        15 ~~l~~~~n~l~-~iP-~~~~--~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~   89 (174)
T 2r9u_A           15 TLVNCQNIRLA-SVP-AGIP--TDKQRLWLNNN-QITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLN   89 (174)
T ss_dssp             SEEECCSSCCS-SCC-SCCC--TTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             cEEEeCCCCCC-ccC-CCcC--CCCcEEEeCCC-CccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECC
Confidence            34667888887 888 4443  88999999999 8998888899999999999999999996544557899999999999


Q ss_pred             cCccCCCCccccCCCCCCCeEeccCCcCC
Q 046655          166 DNYLSGYIPPTLGRLSKLEILNLSSNDLY  194 (194)
Q Consensus       166 ~N~l~g~~p~~~~~l~~L~~L~ls~N~ls  194 (194)
                      +|++++..+..|..+++|++|++++|+++
T Consensus        90 ~N~l~~l~~~~~~~l~~L~~L~L~~N~~~  118 (174)
T 2r9u_A           90 DNHLKSIPRGAFDNLKSLTHIYLYNNPWD  118 (174)
T ss_dssp             SSCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred             CCccceeCHHHhccccCCCEEEeCCCCcc
Confidence            99999654455999999999999999874

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.65  E-value=5.9e-16  Score=128.20  Aligned_cols=124  Identities=18%  Similarity=0.159  Sum_probs=104.7

Q ss_pred             cccccceeCCCCCeeeeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCccccc
Q 046655           69 CKWTGVSCNSAGSVIGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGI  148 (194)
Q Consensus        69 c~~~gv~c~~~~~~~~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~  148 (194)
                      |...++.....+.+++|+.+++++|++.+..| ..+..+++|++|++++| .+.+..|..+..+++|++|++++|++++.
T Consensus       285 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~  362 (455)
T 3v47_A          285 SKIFALLKSVFSHFTDLEQLTLAQNEINKIDD-NAFWGLTHLLKLNLSQN-FLGSIDSRMFENLDKLEVLDLSYNHIRAL  362 (455)
T ss_dssp             SCCCEECTTTTTTCTTCCEEECTTSCCCEECT-TTTTTCTTCCEEECCSS-CCCEECGGGGTTCTTCCEEECCSSCCCEE
T ss_pred             ccccccchhhcccCCCCCEEECCCCcccccCh-hHhcCcccCCEEECCCC-ccCCcChhHhcCcccCCEEECCCCccccc
Confidence            44455555566778888889999999995555 78889999999999999 88877788889999999999999999988


Q ss_pred             CchhhccCcccceeecccCccCCCCccccCCCCCCCeEeccCCcCC
Q 046655          149 IPLEMGRLRNLVHLDLSDNYLSGYIPPTLGRLSKLEILNLSSNDLY  194 (194)
Q Consensus       149 ~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~ls  194 (194)
                      .|..+..+++|++|++++|++++..+..+..+++|++|++++|+++
T Consensus       363 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~  408 (455)
T 3v47_A          363 GDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD  408 (455)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             ChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcc
Confidence            8888999999999999999999655556789999999999999874

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.65  E-value=1.4e-15  Score=118.29  Aligned_cols=112  Identities=22%  Similarity=0.329  Sum_probs=64.0

Q ss_pred             CCeeeeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchhhccCccc
Q 046655           80 GSVIGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNL  159 (194)
Q Consensus        80 ~~~~~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L  159 (194)
                      ..+..|+.+++++|++. .++...+..+++|++|++++| .+++..+..|..+++|++|++++|++.+..+..|..+++|
T Consensus        82 ~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  159 (270)
T 2o6q_A           82 KELKNLETLWVTDNKLQ-ALPIGVFDQLVNLAELRLDRN-QLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSL  159 (270)
T ss_dssp             SSCTTCCEEECCSSCCC-CCCTTTTTTCSSCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             cCCCCCCEEECCCCcCC-cCCHhHcccccCCCEEECCCC-ccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCccc
Confidence            34445555555555555 343234455555666666665 5554444445566666666666666664333345666666


Q ss_pred             ceeecccCccCCCCccccCCCCCCCeEeccCCcC
Q 046655          160 VHLDLSDNYLSGYIPPTLGRLSKLEILNLSSNDL  193 (194)
Q Consensus       160 ~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l  193 (194)
                      +.|++++|++++..+..|.++++|++|++++|++
T Consensus       160 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l  193 (270)
T 2o6q_A          160 KELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQL  193 (270)
T ss_dssp             CEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             ceeEecCCcCcEeChhHhccCCCcCEEECCCCcC
Confidence            6666666666654444466666666666666655

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.64  E-value=7.2e-16  Score=120.59  Aligned_cols=115  Identities=22%  Similarity=0.279  Sum_probs=69.3

Q ss_pred             CCCCCeeeeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchhhccC
Q 046655           77 NSAGSVIGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRL  156 (194)
Q Consensus        77 ~~~~~~~~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l  156 (194)
                      .....+++|+.+++++|++. .++...+..+++|++|++++| .+++..+..+..+++|++|++++|++.+..|..+..+
T Consensus       123 ~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l  200 (285)
T 1ozn_A          123 GLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGN-RISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDL  200 (285)
T ss_dssp             TTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTC
T ss_pred             hHhhCCcCCCEEECCCCccc-ccCHhHhccCCCccEEECCCC-cccccCHHHhcCccccCEEECCCCcccccCHhHccCc
Confidence            33445555555666666665 343244556666666666666 5554444446666666666666666665556666666


Q ss_pred             cccceeecccCccCCCCccccCCCCCCCeEeccCCcC
Q 046655          157 RNLVHLDLSDNYLSGYIPPTLGRLSKLEILNLSSNDL  193 (194)
Q Consensus       157 ~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l  193 (194)
                      ++|+.|++++|++++..+..+..+++|++|++++|++
T Consensus       201 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~  237 (285)
T 1ozn_A          201 GRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPW  237 (285)
T ss_dssp             TTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCE
T ss_pred             ccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCc
Confidence            6666666666666654444566666666666666654

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.64  E-value=8.7e-16  Score=131.42  Aligned_cols=124  Identities=19%  Similarity=0.190  Sum_probs=106.7

Q ss_pred             ccccceeCCCCCeeeeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccC
Q 046655           70 KWTGVSCNSAGSVIGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGII  149 (194)
Q Consensus        70 ~~~gv~c~~~~~~~~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~  149 (194)
                      ...++..........++.+++++|++...+++..+..+++|++|++++| .+++..|..|.++++|++|+|++|++++..
T Consensus       456 ~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N-~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~  534 (635)
T 4g8a_A          456 HTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMSHNNFFSLD  534 (635)
T ss_dssp             CCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTSCCCBCC
T ss_pred             ccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCC-ccCCcChHHHcCCCCCCEEECCCCcCCCCC
Confidence            3444444455677788889999998664443378899999999999999 999888999999999999999999999888


Q ss_pred             chhhccCcccceeecccCccCCCCccccCCC-CCCCeEeccCCcCC
Q 046655          150 PLEMGRLRNLVHLDLSDNYLSGYIPPTLGRL-SKLEILNLSSNDLY  194 (194)
Q Consensus       150 p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l-~~L~~L~ls~N~ls  194 (194)
                      |..|.++++|++|++++|++++..|..+..+ ++|++|++++|+++
T Consensus       535 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~  580 (635)
T 4g8a_A          535 TFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA  580 (635)
T ss_dssp             CGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBC
T ss_pred             hhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCc
Confidence            8889999999999999999999888889888 68999999999874

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.64  E-value=1.4e-15  Score=118.49  Aligned_cols=115  Identities=23%  Similarity=0.278  Sum_probs=96.4

Q ss_pred             CCCCeeeeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchhhccCc
Q 046655           78 SAGSVIGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLR  157 (194)
Q Consensus        78 ~~~~~~~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~  157 (194)
                      ..+.+++|+.+++++|+++ .++...+..+++|++|++++| .+++..+..+..+++|++|++++|++++..+..+..++
T Consensus        80 ~l~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~  157 (272)
T 3rfs_A           80 ALKELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKELVLVEN-QLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLT  157 (272)
T ss_dssp             GGTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred             hhcCCCCCCEEECCCCccC-ccChhHhcCCcCCCEEECCCC-cCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCc
Confidence            3566778888899999998 555366788999999999999 88876666788899999999999999966666678899


Q ss_pred             ccceeecccCccCCCCccccCCCCCCCeEeccCCcCC
Q 046655          158 NLVHLDLSDNYLSGYIPPTLGRLSKLEILNLSSNDLY  194 (194)
Q Consensus       158 ~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~ls  194 (194)
                      +|+.|++++|++++..+..+..+++|++|++++|+++
T Consensus       158 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~  194 (272)
T 3rfs_A          158 NLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLK  194 (272)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred             cCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCC
Confidence            9999999999999766666888999999999999874

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.64  E-value=1.2e-15  Score=118.82  Aligned_cols=126  Identities=20%  Similarity=0.272  Sum_probs=94.8

Q ss_pred             CCcccccceeCCCCCeeeeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCccc
Q 046655           67 YHCKWTGVSCNSAGSVIGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLT  146 (194)
Q Consensus        67 ~~c~~~gv~c~~~~~~~~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~  146 (194)
                      ..+...++....+..+..|+.+++++|++. .++...+..+++|++|++++| .+++..+..|..+++|++|++++|++.
T Consensus        36 s~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~  113 (276)
T 2z62_A           36 SFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGN-PIQSLALGAFSGLSSLQKLVAVETNLA  113 (276)
T ss_dssp             TTCCCCEECTTTTTTCTTCSEEECTTCCCC-EECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTSCCC
T ss_pred             CCCcccccCHhHhccccCCcEEECCCCcCC-ccCHHHccCCcCCCEEECCCC-ccCccChhhhcCCccccEEECCCCCcc
Confidence            344555555556667777888888888887 555356778888888888888 777766677888888888888888887


Q ss_pred             ccCchhhccCcccceeecccCccCC-CCccccCCCCCCCeEeccCCcCC
Q 046655          147 GIIPLEMGRLRNLVHLDLSDNYLSG-YIPPTLGRLSKLEILNLSSNDLY  194 (194)
Q Consensus       147 ~~~p~~~~~l~~L~~L~L~~N~l~g-~~p~~~~~l~~L~~L~ls~N~ls  194 (194)
                      +..+..+..+++|++|++++|++++ .+|..+..+++|++|++++|+++
T Consensus       114 ~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~  162 (276)
T 2z62_A          114 SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ  162 (276)
T ss_dssp             CSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCC
T ss_pred             ccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCC
Confidence            6555567788888888888888875 35778888888888888888763

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.63  E-value=1.3e-15  Score=123.29  Aligned_cols=123  Identities=22%  Similarity=0.267  Sum_probs=86.3

Q ss_pred             cccccceeCCCC-CeeeeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccc
Q 046655           69 CKWTGVSCNSAG-SVIGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTG  147 (194)
Q Consensus        69 c~~~gv~c~~~~-~~~~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~  147 (194)
                      +...++....+. .+.+|+.|++++|+++ .++...|..+++|++|++++| .+++..+..|..+++|++|+|++|++.+
T Consensus        49 N~l~~l~~~~~~~~l~~L~~L~L~~N~i~-~i~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~i~~  126 (361)
T 2xot_A           49 NNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSSN-HLHTLDEFLFSDLQALEVLLLYNNHIVV  126 (361)
T ss_dssp             SCCCEECTTSSSSCCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCCE
T ss_pred             CCCCccChhhhhhcccccCEEECCCCcCC-ccChhhccCCCCCCEEECCCC-cCCcCCHHHhCCCcCCCEEECCCCcccE
Confidence            344444444444 6677777777777777 554356777788888888888 7776656667778888888888888876


Q ss_pred             cCchhhccCcccceeecccCccCCCCccc-c---CCCCCCCeEeccCCcCC
Q 046655          148 IIPLEMGRLRNLVHLDLSDNYLSGYIPPT-L---GRLSKLEILNLSSNDLY  194 (194)
Q Consensus       148 ~~p~~~~~l~~L~~L~L~~N~l~g~~p~~-~---~~l~~L~~L~ls~N~ls  194 (194)
                      ..|..|.++++|+.|+|++|++++ +|.. |   ..+++|++|++++|+|+
T Consensus       127 ~~~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~~~~l~~L~~L~L~~N~l~  176 (361)
T 2xot_A          127 VDRNAFEDMAQLQKLYLSQNQISR-FPVELIKDGNKLPKLMLLDLSSNKLK  176 (361)
T ss_dssp             ECTTTTTTCTTCCEEECCSSCCCS-CCGGGTC----CTTCCEEECCSSCCC
T ss_pred             ECHHHhCCcccCCEEECCCCcCCe-eCHHHhcCcccCCcCCEEECCCCCCC
Confidence            667777788888888888888884 4544 3   46778888888888763

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.63  E-value=1.5e-15  Score=122.84  Aligned_cols=129  Identities=22%  Similarity=0.220  Sum_probs=107.8

Q ss_pred             CCCCCcccccceeCCC--CCe-----eeeeeeeccCCccccccCccccC-CCCCccEEEecCCCCCcccCCccccCCCCC
Q 046655           64 YTSYHCKWTGVSCNSA--GSV-----IGVSLLWYENDNITGELGRFKFS-CFPNLKSFKIHSNYLLSGSIPSEIAAVSML  135 (194)
Q Consensus        64 ~~~~~c~~~gv~c~~~--~~~-----~~l~~l~l~~n~l~~~lp~~~~~-~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L  135 (194)
                      +....|.+..+.|...  ..+     ..++.|++++|+++ .++...+. .+++|++|++++| .+++..+..|..+++|
T Consensus        13 p~~C~C~~~~l~c~~~~l~~iP~~~~~~l~~L~Ls~N~l~-~l~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L   90 (361)
T 2xot_A           13 PANCLCASNILSCSKQQLPNVPQSLPSYTALLDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHN-HLNFISSEAFVPVPNL   90 (361)
T ss_dssp             CTTCEEETTEEECCSSCCSSCCSSCCTTCSEEECCSSCCC-EECTTSSSSCCTTCCEEECCSS-CCCEECTTTTTTCTTC
T ss_pred             CCCCEECCCEEEeCCCCcCccCccCCCCCCEEECCCCCCC-ccChhhhhhcccccCEEECCCC-cCCccChhhccCCCCC
Confidence            3445567777888631  111     23566999999999 66646676 8999999999999 8998777889999999


Q ss_pred             CEeecCCCcccccCchhhccCcccceeecccCccCCCCccccCCCCCCCeEeccCCcCC
Q 046655          136 QTLELPSSSLTGIIPLEMGRLRNLVHLDLSDNYLSGYIPPTLGRLSKLEILNLSSNDLY  194 (194)
Q Consensus       136 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~ls  194 (194)
                      ++|+|++|++....+..|..+++|+.|+|++|++++..|..|..+++|++|++++|.|+
T Consensus        91 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~  149 (361)
T 2xot_A           91 RYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS  149 (361)
T ss_dssp             CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred             CEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCC
Confidence            99999999999776777999999999999999999877889999999999999999874

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.63  E-value=2.4e-15  Score=117.58  Aligned_cols=114  Identities=20%  Similarity=0.207  Sum_probs=57.3

Q ss_pred             CCCCeeeeeeeeccCCc-cccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchhhccC
Q 046655           78 SAGSVIGVSLLWYENDN-ITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRL  156 (194)
Q Consensus        78 ~~~~~~~l~~l~l~~n~-l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l  156 (194)
                      .+..++.|+.+++++|+ +. .++...+..+++|++|++++| .+++..+..+..+++|++|++++|++.+..+..+..+
T Consensus        75 ~~~~l~~L~~L~l~~n~~l~-~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l  152 (285)
T 1ozn_A           75 AFTGLALLEQLDLSDNAQLR-SVDPATFHGLGRLHTLHLDRC-GLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDL  152 (285)
T ss_dssp             TTTTCTTCCEEECCSCTTCC-CCCTTTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred             hcCCccCCCEEeCCCCCCcc-ccCHHHhcCCcCCCEEECCCC-cCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccC
Confidence            34444445555555554 33 332244455555555555555 4444444445555555555555555553333335555


Q ss_pred             cccceeecccCccCCCCccccCCCCCCCeEeccCCcC
Q 046655          157 RNLVHLDLSDNYLSGYIPPTLGRLSKLEILNLSSNDL  193 (194)
Q Consensus       157 ~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l  193 (194)
                      ++|+.|++++|++++..+..+..+++|++|++++|.+
T Consensus       153 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l  189 (285)
T 1ozn_A          153 GNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRV  189 (285)
T ss_dssp             TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred             CCccEEECCCCcccccCHHHhcCccccCEEECCCCcc
Confidence            5555555555555533333455555555555555544

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.63  E-value=9.5e-16  Score=126.97  Aligned_cols=126  Identities=17%  Similarity=0.204  Sum_probs=92.9

Q ss_pred             CCcccccceeCCCCCeeeeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCccc
Q 046655           67 YHCKWTGVSCNSAGSVIGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLT  146 (194)
Q Consensus        67 ~~c~~~gv~c~~~~~~~~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~  146 (194)
                      ..+...++.....++++.|+.+++++|.+.+.++...+..+++|++|++++| .+++..|..|.++++|++|++++|++.
T Consensus        38 s~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~  116 (455)
T 3v47_A           38 SLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN-QFLQLETGAFNGLANLEVLTLTQCNLD  116 (455)
T ss_dssp             CSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTC-TTCEECTTTTTTCTTCCEEECTTSCCB
T ss_pred             cCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCC-ccCccChhhccCcccCCEEeCCCCCCC
Confidence            3445555555556677777777777777776665456777888888888888 777667777888888888888888887


Q ss_pred             ccCchh--hccCcccceeecccCccCCCCccc-cCCCCCCCeEeccCCcC
Q 046655          147 GIIPLE--MGRLRNLVHLDLSDNYLSGYIPPT-LGRLSKLEILNLSSNDL  193 (194)
Q Consensus       147 ~~~p~~--~~~l~~L~~L~L~~N~l~g~~p~~-~~~l~~L~~L~ls~N~l  193 (194)
                      +..|..  +..+++|++|++++|++++..|.. +.++++|++|++++|.+
T Consensus       117 ~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l  166 (455)
T 3v47_A          117 GAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKV  166 (455)
T ss_dssp             THHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCB
T ss_pred             ccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcc
Confidence            655554  777888888888888888666665 67788888888888765

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.63  E-value=1.5e-15  Score=119.80  Aligned_cols=123  Identities=20%  Similarity=0.193  Sum_probs=95.6

Q ss_pred             cccccceeCCCCCeeeeeeeeccCCcccc-ccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccc
Q 046655           69 CKWTGVSCNSAGSVIGVSLLWYENDNITG-ELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTG  147 (194)
Q Consensus        69 c~~~gv~c~~~~~~~~l~~l~l~~n~l~~-~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~  147 (194)
                      |...++.......+..|+.+++++|.+.+ .+| ..+..+++|++|++++| .+++..|..+..+++|++|++++|++.+
T Consensus       136 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~~  213 (306)
T 2z66_A          136 THTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP-DIFTELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMSHNNFFS  213 (306)
T ss_dssp             SCCEECSTTTTTTCTTCCEEECTTCEEGGGEEC-SCCTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTSCCSB
T ss_pred             CcCCccchhhcccCcCCCEEECCCCccccccch-hHHhhCcCCCEEECCCC-CcCCcCHHHhcCCCCCCEEECCCCccCc
Confidence            33444444455667777788888888875 356 67788888888888888 7877777788888888888888888886


Q ss_pred             cCchhhccCcccceeecccCccCCCCccccCCCC-CCCeEeccCCcC
Q 046655          148 IIPLEMGRLRNLVHLDLSDNYLSGYIPPTLGRLS-KLEILNLSSNDL  193 (194)
Q Consensus       148 ~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~-~L~~L~ls~N~l  193 (194)
                      ..+..+..+++|+.|++++|++++..|..+..++ +|++|++++|++
T Consensus       214 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~  260 (306)
T 2z66_A          214 LDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF  260 (306)
T ss_dssp             CCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCE
T ss_pred             cChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCe
Confidence            6666788888888888888888887888888874 888888888876

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.63  E-value=9.4e-16  Score=110.95  Aligned_cols=123  Identities=19%  Similarity=0.242  Sum_probs=97.4

Q ss_pred             CCcccc-cceeCCCCCeeeeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcc
Q 046655           67 YHCKWT-GVSCNSAGSVIGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSL  145 (194)
Q Consensus        67 ~~c~~~-gv~c~~~~~~~~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l  145 (194)
                      ..|... +........+..|+.+++++|.++ .+  ..+..+++|++|++++| .+++.+|..+..+++|++|++++|.+
T Consensus        32 ~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~-~~--~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l  107 (168)
T 2ell_A           32 DNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-SV--SNLPKLPKLKKLELSEN-RIFGGLDMLAEKLPNLTHLNLSGNKL  107 (168)
T ss_dssp             CSCBCBTTBCSSCCGGGGGCCEEEEESSCCC-CC--SSCCCCSSCCEEEEESC-CCCSCCCHHHHHCTTCCEEECBSSSC
T ss_pred             CCCCCChhhHHHHHHhCCCCCEEeCcCCCCC-Ch--hhhccCCCCCEEECcCC-cCchHHHHHHhhCCCCCEEeccCCcc
Confidence            445555 333344567788888999999988 44  36788999999999999 88877787777899999999999999


Q ss_pred             ccc-CchhhccCcccceeecccCccCCCCc---cccCCCCCCCeEeccCCcC
Q 046655          146 TGI-IPLEMGRLRNLVHLDLSDNYLSGYIP---PTLGRLSKLEILNLSSNDL  193 (194)
Q Consensus       146 ~~~-~p~~~~~l~~L~~L~L~~N~l~g~~p---~~~~~l~~L~~L~ls~N~l  193 (194)
                      ++. .+..+..+++|+.|++++|.+++..+   ..+..+++|++|++++|.+
T Consensus       108 ~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~  159 (168)
T 2ell_A          108 KDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRED  159 (168)
T ss_dssp             CSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred             CcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCCh
Confidence            843 22678889999999999999995433   3788999999999998875

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.62  E-value=3.2e-15  Score=117.62  Aligned_cols=111  Identities=23%  Similarity=0.263  Sum_probs=65.7

Q ss_pred             CCeeeeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchhhccCccc
Q 046655           80 GSVIGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNL  159 (194)
Q Consensus        80 ~~~~~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L  159 (194)
                      +.+..|+.+++++|++. .+| ..+..+++|++|++++| .+++..+..|..+++|++|++++|++++..+..|..+++|
T Consensus        74 ~~l~~L~~L~Ls~N~l~-~l~-~~~~~l~~L~~L~l~~N-~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L  150 (290)
T 1p9a_G           74 GTLPVLGTLDLSHNQLQ-SLP-LLGQTLPALTVLDVSFN-RLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL  150 (290)
T ss_dssp             SCCTTCCEEECCSSCCS-SCC-CCTTTCTTCCEEECCSS-CCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTC
T ss_pred             CCCCcCCEEECCCCcCC-cCc-hhhccCCCCCEEECCCC-cCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCC
Confidence            34445555666666665 555 45556666666666666 5665444556666666666666666664444445566666


Q ss_pred             ceeecccCccCCCCccccCCCCCCCeEeccCCcC
Q 046655          160 VHLDLSDNYLSGYIPPTLGRLSKLEILNLSSNDL  193 (194)
Q Consensus       160 ~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l  193 (194)
                      +.|++++|++++..+..|.++++|++|++++|+|
T Consensus       151 ~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l  184 (290)
T 1p9a_G          151 EKLSLANNNLTELPAGLLNGLENLDTLLLQENSL  184 (290)
T ss_dssp             CEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             CEEECCCCcCCccCHHHhcCcCCCCEEECCCCcC
Confidence            6666666666633333345566666666666654

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.62  E-value=2e-15  Score=129.34  Aligned_cols=126  Identities=16%  Similarity=0.222  Sum_probs=104.5

Q ss_pred             CCcccccceeCCCCCeeeeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCccc
Q 046655           67 YHCKWTGVSCNSAGSVIGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLT  146 (194)
Q Consensus        67 ~~c~~~gv~c~~~~~~~~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~  146 (194)
                      ..+...++....+.+++.|+.+++++|++++..| ..|..+++|++|++++| .+++..|..|+++++|++|++++|++.
T Consensus        40 s~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~-~~~~~l~~L~~L~Ls~n-~l~~~~p~~~~~l~~L~~L~L~~n~l~  117 (606)
T 3vq2_A           40 SFNPLKILKSYSFSNFSELQWLDLSRCEIETIED-KAWHGLHHLSNLILTGN-PIQSFSPGSFSGLTSLENLVAVETKLA  117 (606)
T ss_dssp             TTSCCCEECTTTTTTCTTCCEEECTTCCCCEECT-TTTTTCTTCCEEECTTC-CCCCCCTTSSTTCTTCCEEECTTSCCC
T ss_pred             CCCCcCEeChhhccCCccCcEEeCCCCcccccCH-HHhhchhhcCEeECCCC-cccccChhhcCCcccCCEEEccCCccc
Confidence            4455666666677788888889999999884334 67888999999999999 788777888999999999999999998


Q ss_pred             ccCchhhccCcccceeecccCccCC-CCccccCCCCCCCeEeccCCcCC
Q 046655          147 GIIPLEMGRLRNLVHLDLSDNYLSG-YIPPTLGRLSKLEILNLSSNDLY  194 (194)
Q Consensus       147 ~~~p~~~~~l~~L~~L~L~~N~l~g-~~p~~~~~l~~L~~L~ls~N~ls  194 (194)
                      +..|..++++++|++|++++|++++ .+|..++++++|++|++++|.++
T Consensus       118 ~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~  166 (606)
T 3vq2_A          118 SLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQ  166 (606)
T ss_dssp             CSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCC
T ss_pred             cccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcce
Confidence            6666778899999999999999885 57888999999999999998764

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.62  E-value=1.6e-15  Score=128.42  Aligned_cols=122  Identities=19%  Similarity=0.243  Sum_probs=97.5

Q ss_pred             CcccccceeCCC-C--------CeeeeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEe
Q 046655           68 HCKWTGVSCNSA-G--------SVIGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTL  138 (194)
Q Consensus        68 ~c~~~gv~c~~~-~--------~~~~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L  138 (194)
                      .|.|.|+ |+.. .        -...++.+++++|++++..| ..+..+++|++|++++| .+++..|..|..+++|++|
T Consensus         3 ~C~~~~~-c~~~~~~l~~ip~~~~~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L   79 (549)
T 2z81_A            3 SCDASGV-CDGRSRSFTSIPSGLTAAMKSLDLSFNKITYIGH-GDLRACANLQVLILKSS-RINTIEGDAFYSLGSLEHL   79 (549)
T ss_dssp             EECTTSE-EECTTSCCSSCCSCCCTTCCEEECCSSCCCEECS-STTSSCTTCCEEECTTS-CCCEECTTTTTTCTTCCEE
T ss_pred             cCCCCce-EECCCCccccccccCCCCccEEECcCCccCccCh-hhhhcCCcccEEECCCC-CcCccChhhccccccCCEE
Confidence            4777777 6521 1        12356778889999884445 67888999999999999 8888777888999999999


Q ss_pred             ecCCCcccccCchhhccCcccceeecccCccCC-CCccccCCCCCCCeEeccCCc
Q 046655          139 ELPSSSLTGIIPLEMGRLRNLVHLDLSDNYLSG-YIPPTLGRLSKLEILNLSSND  192 (194)
Q Consensus       139 ~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~g-~~p~~~~~l~~L~~L~ls~N~  192 (194)
                      ++++|++.+..|..|+++++|++|++++|++++ ..|..++++++|++|++++|.
T Consensus        80 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~  134 (549)
T 2z81_A           80 DLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVE  134 (549)
T ss_dssp             ECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESS
T ss_pred             ECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCc
Confidence            999999987766678899999999999999885 356778888889999888886

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.61  E-value=5.6e-15  Score=109.65  Aligned_cols=103  Identities=20%  Similarity=0.331  Sum_probs=92.0

Q ss_pred             eeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchhhccCcccceeecc
Q 046655           86 SLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLS  165 (194)
Q Consensus        86 ~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~  165 (194)
                      ..+++++|+++ .+| ..+  .+.+++|++++| .++ .+|..|..+++|++|+|++|.+++..+..|.++++|+.|+++
T Consensus        13 ~~l~~~~~~l~-~ip-~~~--~~~l~~L~L~~n-~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls   86 (193)
T 2wfh_A           13 TVVRCSNKGLK-VLP-KGI--PRDVTELYLDGN-QFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILS   86 (193)
T ss_dssp             TEEECTTSCCS-SCC-SCC--CTTCCEEECCSS-CCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CEEEcCCCCCC-cCC-CCC--CCCCCEEECCCC-cCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECC
Confidence            45778999999 888 444  368999999999 887 688999999999999999999997777789999999999999


Q ss_pred             cCccCCCCccccCCCCCCCeEeccCCcCC
Q 046655          166 DNYLSGYIPPTLGRLSKLEILNLSSNDLY  194 (194)
Q Consensus       166 ~N~l~g~~p~~~~~l~~L~~L~ls~N~ls  194 (194)
                      +|++++..|..|..+++|++|++++|+|+
T Consensus        87 ~N~l~~i~~~~f~~l~~L~~L~L~~N~l~  115 (193)
T 2wfh_A           87 YNRLRCIPPRTFDGLKSLRLLSLHGNDIS  115 (193)
T ss_dssp             SSCCCBCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             CCccCEeCHHHhCCCCCCCEEECCCCCCC
Confidence            99999877778999999999999999874

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.61  E-value=6.7e-16  Score=133.62  Aligned_cols=123  Identities=15%  Similarity=0.196  Sum_probs=111.9

Q ss_pred             CcccccceeCCCCCeeeeeeeeccCCccccc-----------------cCccccC--CCCCccEEEecCCCCCcccCCcc
Q 046655           68 HCKWTGVSCNSAGSVIGVSLLWYENDNITGE-----------------LGRFKFS--CFPNLKSFKIHSNYLLSGSIPSE  128 (194)
Q Consensus        68 ~c~~~gv~c~~~~~~~~l~~l~l~~n~l~~~-----------------lp~~~~~--~l~~L~~L~l~~n~~l~~~~p~~  128 (194)
                      .+.+.| .....++++.|+.+++++|+++|.                 +| ..+.  .+++|++|++++| .+.+.+|..
T Consensus       192 ~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip-~~l~~~~l~~L~~L~L~~n-~l~~~~p~~  268 (636)
T 4eco_A          192 SNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKT-EDLKWDNLKDLTDVEVYNC-PNLTKLPTF  268 (636)
T ss_dssp             SCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTT-SCCCGGGCTTCCEEEEECC-TTCSSCCTT
T ss_pred             cCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCc-hhhhhcccCCCCEEEecCC-cCCccChHH
Confidence            567778 455678899999999999999975                 99 7888  9999999999999 899999999


Q ss_pred             ccCCCCCCEeecCCCc-ccc-cCchhhccC------cccceeecccCccCCCCcc--ccCCCCCCCeEeccCCcCC
Q 046655          129 IAAVSMLQTLELPSSS-LTG-IIPLEMGRL------RNLVHLDLSDNYLSGYIPP--TLGRLSKLEILNLSSNDLY  194 (194)
Q Consensus       129 ~~~l~~L~~L~L~~n~-l~~-~~p~~~~~l------~~L~~L~L~~N~l~g~~p~--~~~~l~~L~~L~ls~N~ls  194 (194)
                      ++++++|++|++++|+ ++| .+|..++.+      ++|++|++++|+++ .+|.  .++++++|++|++++|.++
T Consensus       269 l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~  343 (636)
T 4eco_A          269 LKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLE  343 (636)
T ss_dssp             TTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCE
T ss_pred             HhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCc
Confidence            9999999999999998 998 899998887      99999999999999 8998  8999999999999999863

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.61  E-value=2.9e-15  Score=120.60  Aligned_cols=105  Identities=22%  Similarity=0.264  Sum_probs=71.5

Q ss_pred             eeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchhhccCcccceee
Q 046655           84 GVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLD  163 (194)
Q Consensus        84 ~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~  163 (194)
                      .++.+++++|+++ .++...+..+++|++|++++| .+++..+..|..+++|++|++++|++++..+..+.++++|++|+
T Consensus        53 ~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  130 (353)
T 2z80_A           53 AVKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSN-GINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLN  130 (353)
T ss_dssp             TCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEE
T ss_pred             cCcEEECCCCcCc-ccCHHHhccCCCCCEEECCCC-ccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEE
Confidence            4555677777777 455346777777777777777 66666666677777777777777777743333467777777777


Q ss_pred             cccCccCCCCcc--ccCCCCCCCeEeccCC
Q 046655          164 LSDNYLSGYIPP--TLGRLSKLEILNLSSN  191 (194)
Q Consensus       164 L~~N~l~g~~p~--~~~~l~~L~~L~ls~N  191 (194)
                      +++|+++ .+|.  .+.++++|++|++++|
T Consensus       131 L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n  159 (353)
T 2z80_A          131 LLGNPYK-TLGETSLFSHLTKLQILRVGNM  159 (353)
T ss_dssp             CTTCCCS-SSCSSCSCTTCTTCCEEEEEES
T ss_pred             CCCCCCc-ccCchhhhccCCCCcEEECCCC
Confidence            7777777 3444  5667777777777766

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.60  E-value=4.2e-15  Score=110.15  Aligned_cols=104  Identities=20%  Similarity=0.241  Sum_probs=91.8

Q ss_pred             eeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCc-cccCCCCCCEeecCCCcccccCchhhccCcccceeec
Q 046655           86 SLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPS-EIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDL  164 (194)
Q Consensus        86 ~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~-~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L  164 (194)
                      +.+++++|++. .+| ..+.  ..+++|++++| .+++..+. .|..+++|++|+|++|++++..|..|.++++|+.|++
T Consensus        11 ~~l~~s~~~l~-~ip-~~~~--~~l~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L   85 (192)
T 1w8a_A           11 TTVDCTGRGLK-EIP-RDIP--LHTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQL   85 (192)
T ss_dssp             TEEECTTSCCS-SCC-SCCC--TTCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred             CEEEcCCCCcC-cCc-cCCC--CCCCEEECCCC-cCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEEC
Confidence            45778999997 898 4443  38999999999 88865554 4899999999999999999888999999999999999


Q ss_pred             ccCccCCCCccccCCCCCCCeEeccCCcCC
Q 046655          165 SDNYLSGYIPPTLGRLSKLEILNLSSNDLY  194 (194)
Q Consensus       165 ~~N~l~g~~p~~~~~l~~L~~L~ls~N~ls  194 (194)
                      ++|++++..|..|..+++|++|++++|+|+
T Consensus        86 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  115 (192)
T 1w8a_A           86 GENKIKEISNKMFLGLHQLKTLNLYDNQIS  115 (192)
T ss_dssp             CSCCCCEECSSSSTTCTTCCEEECCSSCCC
T ss_pred             CCCcCCccCHHHhcCCCCCCEEECCCCcCC
Confidence            999999888888999999999999999874

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.60  E-value=3e-15  Score=118.09  Aligned_cols=115  Identities=19%  Similarity=0.224  Sum_probs=89.8

Q ss_pred             CCCCeeeeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcc-cCCccccCCCCCCEeecCCCcccccCchhhccC
Q 046655           78 SAGSVIGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSG-SIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRL  156 (194)
Q Consensus        78 ~~~~~~~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~-~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l  156 (194)
                      ....+.+|+.+++++|++.+..+ ..+..+++|++|++++| .+.+ .+|..+..+++|++|++++|++.+..|..+..+
T Consensus       121 ~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l  198 (306)
T 2z66_A          121 VFLSLRNLIYLDISHTHTRVAFN-GIFNGLSSLEVLKMAGN-SFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSL  198 (306)
T ss_dssp             TTTTCTTCCEEECTTSCCEECST-TTTTTCTTCCEEECTTC-EEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTC
T ss_pred             hhhhccCCCEEECCCCcCCccch-hhcccCcCCCEEECCCC-ccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCC
Confidence            34566777777888888775555 66777888888888888 6665 467778888888888888888887777788888


Q ss_pred             cccceeecccCccCCCCccccCCCCCCCeEeccCCcCC
Q 046655          157 RNLVHLDLSDNYLSGYIPPTLGRLSKLEILNLSSNDLY  194 (194)
Q Consensus       157 ~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~ls  194 (194)
                      ++|+.|++++|++++..+..+..+++|++|++++|+++
T Consensus       199 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  236 (306)
T 2z66_A          199 SSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM  236 (306)
T ss_dssp             TTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCC
T ss_pred             CCCCEEECCCCccCccChhhccCcccCCEeECCCCCCc
Confidence            88888888888888665667888888888888888763

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.60  E-value=2.3e-15  Score=120.39  Aligned_cols=108  Identities=27%  Similarity=0.282  Sum_probs=79.2

Q ss_pred             eeeeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchhhccCcccce
Q 046655           82 VIGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVH  161 (194)
Q Consensus        82 ~~~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~  161 (194)
                      ++.|+.+++++|+++ .+| ..+..+++|++|++++| .+++ +|..+..+++|++|++++|.+.+.+|..++.+++|+.
T Consensus       182 l~~L~~L~L~~n~l~-~lp-~~l~~l~~L~~L~L~~N-~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~  257 (328)
T 4fcg_A          182 LVNLQSLRLEWTGIR-SLP-ASIANLQNLKSLKIRNS-PLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKR  257 (328)
T ss_dssp             STTCCEEEEEEECCC-CCC-GGGGGCTTCCEEEEESS-CCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCE
T ss_pred             CCCCCEEECcCCCcC-cch-HhhcCCCCCCEEEccCC-CCCc-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCE
Confidence            556666777777777 777 56777777777777777 6664 5666777777777777777777777777777777777


Q ss_pred             eecccCccCCCCccccCCCCCCCeEeccCCcC
Q 046655          162 LDLSDNYLSGYIPPTLGRLSKLEILNLSSNDL  193 (194)
Q Consensus       162 L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l  193 (194)
                      |++++|++.+.+|..+.++++|++|++++|++
T Consensus       258 L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~  289 (328)
T 4fcg_A          258 LILKDCSNLLTLPLDIHRLTQLEKLDLRGCVN  289 (328)
T ss_dssp             EECTTCTTCCBCCTTGGGCTTCCEEECTTCTT
T ss_pred             EECCCCCchhhcchhhhcCCCCCEEeCCCCCc
Confidence            77777777777777777777777777777654

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.60  E-value=1.6e-15  Score=133.17  Aligned_cols=110  Identities=25%  Similarity=0.318  Sum_probs=100.3

Q ss_pred             CCCeeeeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchhhccCcc
Q 046655           79 AGSVIGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRN  158 (194)
Q Consensus        79 ~~~~~~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~  158 (194)
                      +..+..|+.|++++|.+. .+| ..+..+++|++|+|++| .++ .+|..|..+++|++|+|++|+++ .+|..|+.+++
T Consensus       220 ~~~l~~L~~L~Ls~n~l~-~l~-~~~~~l~~L~~L~Ls~N-~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~  294 (727)
T 4b8c_D          220 KYDDQLWHALDLSNLQIF-NIS-ANIFKYDFLTRLYLNGN-SLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQ  294 (727)
T ss_dssp             --CCCCCCEEECTTSCCS-CCC-GGGGGCCSCSCCBCTTS-CCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTT
T ss_pred             hccCCCCcEEECCCCCCC-CCC-hhhcCCCCCCEEEeeCC-cCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCC
Confidence            456677888999999999 898 67779999999999999 888 78999999999999999999999 88999999999


Q ss_pred             cceeecccCccCCCCccccCCCCCCCeEeccCCcCC
Q 046655          159 LVHLDLSDNYLSGYIPPTLGRLSKLEILNLSSNDLY  194 (194)
Q Consensus       159 L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~ls  194 (194)
                      |++|+|++|.++ .+|..|+.+++|++|+|++|+|+
T Consensus       295 L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~  329 (727)
T 4b8c_D          295 LKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLE  329 (727)
T ss_dssp             CSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCC
T ss_pred             CCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccC
Confidence            999999999998 78999999999999999999874

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.60  E-value=4.8e-15  Score=116.66  Aligned_cols=123  Identities=24%  Similarity=0.229  Sum_probs=103.4

Q ss_pred             CCcccccceeCCCCCeeeeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCccc
Q 046655           67 YHCKWTGVSCNSAGSVIGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLT  146 (194)
Q Consensus        67 ~~c~~~gv~c~~~~~~~~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~  146 (194)
                      ..+...++....+..++.|+.+++++|+++ .++ . ...+++|++|++++| .++ .+|..+..+++|++|++++|+++
T Consensus        39 ~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~-~-~~~l~~L~~L~Ls~N-~l~-~l~~~~~~l~~L~~L~l~~N~l~  113 (290)
T 1p9a_G           39 SENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQ-V-DGTLPVLGTLDLSHN-QLQ-SLPLLGQTLPALTVLDVSFNRLT  113 (290)
T ss_dssp             TTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEE-C-CSCCTTCCEEECCSS-CCS-SCCCCTTTCTTCCEEECCSSCCC
T ss_pred             CCCcCCccCHHHhhcCCCCCEEECCCCccC-ccc-C-CCCCCcCCEEECCCC-cCC-cCchhhccCCCCCEEECCCCcCc
Confidence            345566666666777888888999999998 666 2 378899999999999 777 67888899999999999999999


Q ss_pred             ccCchhhccCcccceeecccCccCCCCccccCCCCCCCeEeccCCcCC
Q 046655          147 GIIPLEMGRLRNLVHLDLSDNYLSGYIPPTLGRLSKLEILNLSSNDLY  194 (194)
Q Consensus       147 ~~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~ls  194 (194)
                      +..|..|.++++|+.|++++|++++..+..|..+++|+.|++++|+|+
T Consensus       114 ~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  161 (290)
T 1p9a_G          114 SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT  161 (290)
T ss_dssp             CCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCS
T ss_pred             ccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCC
Confidence            666678999999999999999999766666889999999999999874

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.59  E-value=3.2e-15  Score=108.13  Aligned_cols=108  Identities=27%  Similarity=0.313  Sum_probs=95.8

Q ss_pred             eeeeeeeeccCCccc-cccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchhhccCcccc
Q 046655           82 VIGVSLLWYENDNIT-GELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLV  160 (194)
Q Consensus        82 ~~~l~~l~l~~n~l~-~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~  160 (194)
                      ...++.+++++|++. +.+| ..+..+++|++|++++| .+++.  ..+..+++|++|++++|++.+.+|..+..+++|+
T Consensus        23 ~~~L~~L~l~~n~l~~~~i~-~~~~~l~~L~~L~l~~n-~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~   98 (168)
T 2ell_A           23 PAAVRELVLDNCKSNDGKIE-GLTAEFVNLEFLSLINV-GLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLT   98 (168)
T ss_dssp             TTSCSEEECCSCBCBTTBCS-SCCGGGGGCCEEEEESS-CCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCC
T ss_pred             cccCCEEECCCCCCChhhHH-HHHHhCCCCCEEeCcCC-CCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCC
Confidence            356777888999998 7888 67889999999999999 78864  7789999999999999999977888888899999


Q ss_pred             eeecccCccCCCCc--cccCCCCCCCeEeccCCcCC
Q 046655          161 HLDLSDNYLSGYIP--PTLGRLSKLEILNLSSNDLY  194 (194)
Q Consensus       161 ~L~L~~N~l~g~~p--~~~~~l~~L~~L~ls~N~ls  194 (194)
                      +|++++|++++ +|  ..+..+++|++|++++|+++
T Consensus        99 ~L~Ls~N~l~~-~~~~~~l~~l~~L~~L~l~~N~l~  133 (168)
T 2ell_A           99 HLNLSGNKLKD-ISTLEPLKKLECLKSLDLFNCEVT  133 (168)
T ss_dssp             EEECBSSSCCS-SGGGGGGSSCSCCCEEECCSSGGG
T ss_pred             EEeccCCccCc-chhHHHHhcCCCCCEEEeeCCcCc
Confidence            99999999995 44  78999999999999999863

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.59  E-value=8.1e-15  Score=117.62  Aligned_cols=108  Identities=26%  Similarity=0.261  Sum_probs=90.9

Q ss_pred             CcccccceeCCCCCeeeeeeeeccCC-ccccccCccccCCCCCccEEEecC-CCCCcccCCccccCCCCCCEeecCCCcc
Q 046655           68 HCKWTGVSCNSAGSVIGVSLLWYEND-NITGELGRFKFSCFPNLKSFKIHS-NYLLSGSIPSEIAAVSMLQTLELPSSSL  145 (194)
Q Consensus        68 ~c~~~gv~c~~~~~~~~l~~l~l~~n-~l~~~lp~~~~~~l~~L~~L~l~~-n~~l~~~~p~~~~~l~~L~~L~L~~n~l  145 (194)
                      .|.|..+.|.              ++ +++ .+| . +..+++|++|+|++ | .+++..+..|..+++|+.|+|++|++
T Consensus         7 ~C~~~~v~~~--------------~~n~l~-~ip-~-l~~~~~L~~L~l~~~n-~l~~~~~~~~~~l~~L~~L~l~~N~l   68 (347)
T 2ifg_A            7 PHGSSGLRCT--------------RDGALD-SLH-H-LPGAENLTELYIENQQ-HLQHLELRDLRGLGELRNLTIVKSGL   68 (347)
T ss_dssp             CSSSSCEECC--------------SSCCCT-TTT-T-SCSCSCCSEEECCSCS-SCCEECGGGSCSCCCCSEEECCSSCC
T ss_pred             cccCCEEEcC--------------CCCCCC-ccC-C-CCCCCCeeEEEccCCC-CCCCcChhHhccccCCCEEECCCCcc
Confidence            4777777664              33 566 788 5 88999999999996 8 89987778899999999999999999


Q ss_pred             cccCchhhccCcccceeecccCccCCCCccccCCCCCCCeEeccCCcCC
Q 046655          146 TGIIPLEMGRLRNLVHLDLSDNYLSGYIPPTLGRLSKLEILNLSSNDLY  194 (194)
Q Consensus       146 ~~~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~ls  194 (194)
                      ++..|..|.++++|+.|+|++|+|++..+..+..++ |+.|++.+|+|.
T Consensus        69 ~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~  116 (347)
T 2ifg_A           69 RFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLH  116 (347)
T ss_dssp             CEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred             ceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEEeeCCCcc
Confidence            988888999999999999999999965444555555 999999999874

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.58  E-value=7.2e-15  Score=125.85  Aligned_cols=110  Identities=17%  Similarity=0.201  Sum_probs=99.7

Q ss_pred             eeeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchhhccCccccee
Q 046655           83 IGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHL  162 (194)
Q Consensus        83 ~~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L  162 (194)
                      ..++.+++++|+++ .++...|..+++|++|++++| .+++..|..|.++++|++|++++|++.+..|..|+++++|++|
T Consensus        32 ~~l~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n-~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L  109 (606)
T 3vq2_A           32 SSTKNIDLSFNPLK-ILKSYSFSNFSELQWLDLSRC-EIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENL  109 (606)
T ss_dssp             TTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEE
T ss_pred             CCcCEEECCCCCcC-EeChhhccCCccCcEEeCCCC-cccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEE
Confidence            55777899999999 555378999999999999999 8998888899999999999999999998889999999999999


Q ss_pred             ecccCccCCCCccccCCCCCCCeEeccCCcCC
Q 046655          163 DLSDNYLSGYIPPTLGRLSKLEILNLSSNDLY  194 (194)
Q Consensus       163 ~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~ls  194 (194)
                      ++++|++++..|..++++++|++|++++|.++
T Consensus       110 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  141 (606)
T 3vq2_A          110 VAVETKLASLESFPIGQLITLKKLNVAHNFIH  141 (606)
T ss_dssp             ECTTSCCCCSSSSCCTTCTTCCEEECCSSCCC
T ss_pred             EccCCccccccccccCCCCCCCEEeCCCCccc
Confidence            99999999766688999999999999999863

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.58  E-value=8.2e-15  Score=122.26  Aligned_cols=123  Identities=20%  Similarity=0.192  Sum_probs=64.5

Q ss_pred             cccccceeCCCCCeeeeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCccccc
Q 046655           69 CKWTGVSCNSAGSVIGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGI  148 (194)
Q Consensus        69 c~~~gv~c~~~~~~~~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~  148 (194)
                      +...++....+..+..|+.+++++|++.+..| ..|..+++|++|++++| .+++..+..|.++++|++|++++|++.+.
T Consensus        42 n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~-~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~  119 (477)
T 2id5_A           42 NRIKTLNQDEFASFPHLEELELNENIVSAVEP-GAFNNLFNLRTLGLRSN-RLKLIPLGVFTGLSNLTKLDISENKIVIL  119 (477)
T ss_dssp             SCCCEECTTTTTTCTTCCEEECTTSCCCEECT-TTTTTCTTCCEEECCSS-CCCSCCTTSSTTCTTCCEEECTTSCCCEE
T ss_pred             CccceECHhHccCCCCCCEEECCCCccCEeCh-hhhhCCccCCEEECCCC-cCCccCcccccCCCCCCEEECCCCccccC
Confidence            33444444444555555555555555553333 45555555555555555 45533333445555555555555555555


Q ss_pred             CchhhccCcccceeecccCccCCCCccccCCCCCCCeEeccCCcC
Q 046655          149 IPLEMGRLRNLVHLDLSDNYLSGYIPPTLGRLSKLEILNLSSNDL  193 (194)
Q Consensus       149 ~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l  193 (194)
                      .|..|..+++|+.|++++|++++..|..|..+++|+.|++++|++
T Consensus       120 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l  164 (477)
T 2id5_A          120 LDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNL  164 (477)
T ss_dssp             CTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCC
T ss_pred             ChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcC
Confidence            455555555555555555555544444555555555555555543

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.57  E-value=5.2e-15  Score=126.54  Aligned_cols=102  Identities=25%  Similarity=0.353  Sum_probs=81.1

Q ss_pred             eeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchhhccCcccceeec
Q 046655           85 VSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDL  164 (194)
Q Consensus        85 l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L  164 (194)
                      ++.+++++|+++ .+| . +..+++|++|++++| .++ .+|..++.+++|+.|+|++|++++ +| .++.+++|+.|++
T Consensus       443 L~~L~Ls~n~l~-~lp-~-~~~l~~L~~L~Ls~N-~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~L  515 (567)
T 1dce_A          443 VRVLHLAHKDLT-VLC-H-LEQLLLVTHLDLSHN-RLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLL  515 (567)
T ss_dssp             CSEEECTTSCCS-SCC-C-GGGGTTCCEEECCSS-CCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEEC
T ss_pred             ceEEEecCCCCC-CCc-C-ccccccCcEeecCcc-ccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEEC
Confidence            455777888888 577 4 778888888888888 777 678888888888888888888884 66 7888888888888


Q ss_pred             ccCccCCCC-ccccCCCCCCCeEeccCCcC
Q 046655          165 SDNYLSGYI-PPTLGRLSKLEILNLSSNDL  193 (194)
Q Consensus       165 ~~N~l~g~~-p~~~~~l~~L~~L~ls~N~l  193 (194)
                      ++|++++.. |..++.+++|+.|++++|+|
T Consensus       516 s~N~l~~~~~p~~l~~l~~L~~L~L~~N~l  545 (567)
T 1dce_A          516 CNNRLQQSAAIQPLVSCPRLVLLNLQGNSL  545 (567)
T ss_dssp             CSSCCCSSSTTGGGGGCTTCCEEECTTSGG
T ss_pred             CCCCCCCCCCcHHHhcCCCCCEEEecCCcC
Confidence            888888665 78888888888888888876

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.57  E-value=8.9e-15  Score=130.23  Aligned_cols=127  Identities=22%  Similarity=0.295  Sum_probs=105.3

Q ss_pred             CCcccccceeCCCCCeeeeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCccc
Q 046655           67 YHCKWTGVSCNSAGSVIGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLT  146 (194)
Q Consensus        67 ~~c~~~gv~c~~~~~~~~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~  146 (194)
                      ..|...++....+.+++.|+.|++++|...+.+++..|..+++|++|++++| .+.+..|..|.++++|++|+|++|.+.
T Consensus        32 s~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N-~l~~~~p~~~~~l~~L~~L~Ls~n~l~  110 (844)
T 3j0a_A           32 SFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS-KIYFLHPDAFQGLFHLFELRLYFCGLS  110 (844)
T ss_dssp             ESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTC-CCCEECTTSSCSCSSCCCEECTTCCCS
T ss_pred             CCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCC-cCcccCHhHccCCcccCEeeCcCCCCC
Confidence            3455666666677888888889999987777885478889999999999999 888888888999999999999999998


Q ss_pred             ccCchh--hccCcccceeecccCccCCCCc-cccCCCCCCCeEeccCCcCC
Q 046655          147 GIIPLE--MGRLRNLVHLDLSDNYLSGYIP-PTLGRLSKLEILNLSSNDLY  194 (194)
Q Consensus       147 ~~~p~~--~~~l~~L~~L~L~~N~l~g~~p-~~~~~l~~L~~L~ls~N~ls  194 (194)
                      +.+|..  +..+++|++|++++|.+++..+ ..|+++++|++|++++|.++
T Consensus       111 ~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~  161 (844)
T 3j0a_A          111 DAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIF  161 (844)
T ss_dssp             SCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCC
T ss_pred             cccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCC
Confidence            767765  8889999999999999986544 56889999999999998763

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.57  E-value=1.1e-14  Score=123.71  Aligned_cols=126  Identities=20%  Similarity=0.272  Sum_probs=99.1

Q ss_pred             CCcccccceeCCCCCeeeeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCccc
Q 046655           67 YHCKWTGVSCNSAGSVIGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLT  146 (194)
Q Consensus        67 ~~c~~~gv~c~~~~~~~~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~  146 (194)
                      ..+...++....+..++.|+.+++++|++. .++...|..+++|++|++++| .+++..|..|.++++|++|++++|++.
T Consensus        36 s~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~-~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~  113 (570)
T 2z63_A           36 SFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGN-PIQSLALGAFSGLSSLQKLVAVETNLA  113 (570)
T ss_dssp             CSCCCCEECTTTTTTCSSCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTSCCC
T ss_pred             cCCccCccChhHhhCCCCceEEECCCCcCC-ccCcccccCchhCCEEeCcCC-cCCccCHhhhcCccccccccccccccc
Confidence            345566666666777888888888888888 454367888888888888888 777766778888888888888888888


Q ss_pred             ccCchhhccCcccceeecccCccCC-CCccccCCCCCCCeEeccCCcCC
Q 046655          147 GIIPLEMGRLRNLVHLDLSDNYLSG-YIPPTLGRLSKLEILNLSSNDLY  194 (194)
Q Consensus       147 ~~~p~~~~~l~~L~~L~L~~N~l~g-~~p~~~~~l~~L~~L~ls~N~ls  194 (194)
                      +..+..++.+++|++|++++|.+++ .+|..++++++|++|++++|.++
T Consensus       114 ~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~  162 (570)
T 2z63_A          114 SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ  162 (570)
T ss_dssp             CSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCC
T ss_pred             cCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccc
Confidence            5444468888888888888888886 46888888888888888888763

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.57  E-value=8.1e-15  Score=108.84  Aligned_cols=107  Identities=17%  Similarity=0.207  Sum_probs=53.7

Q ss_pred             CeeeeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCc-ccccCchhhccCccc
Q 046655           81 SVIGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSS-LTGIIPLEMGRLRNL  159 (194)
Q Consensus        81 ~~~~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~-l~~~~p~~~~~l~~L  159 (194)
                      .++.|+.+++++|++++..+ ..+..+++|++|++++| .+++..+..+..+++|++|++++|+ +. .+| .+..+++|
T Consensus        86 ~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~Ls~n-~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L  161 (197)
T 4ezg_A           86 GLSNLERLRIMGKDVTSDKI-PNLSGLTSLTLLDISHS-AHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPEL  161 (197)
T ss_dssp             TCTTCCEEEEECTTCBGGGS-CCCTTCTTCCEEECCSS-BCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSC
T ss_pred             cCCCCCEEEeECCccCcccC-hhhcCCCCCCEEEecCC-ccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCC
Confidence            33444445555555554344 34555555555555555 4444444445555555555555554 33 333 35555555


Q ss_pred             ceeecccCccCCCCccccCCCCCCCeEeccCCcC
Q 046655          160 VHLDLSDNYLSGYIPPTLGRLSKLEILNLSSNDL  193 (194)
Q Consensus       160 ~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l  193 (194)
                      +.|++++|++++ ++ .+..+++|++|++++|+|
T Consensus       162 ~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i  193 (197)
T 4ezg_A          162 KSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTI  193 (197)
T ss_dssp             CEEECTTBCCCC-CT-TGGGCSSCCEEEECBC--
T ss_pred             CEEECCCCCCcC-hH-HhccCCCCCEEEeeCccc
Confidence            555555555553 33 445555555555555554

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.57  E-value=5.7e-15  Score=109.69  Aligned_cols=110  Identities=20%  Similarity=0.237  Sum_probs=97.2

Q ss_pred             CCCeeeeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchhhccCcc
Q 046655           79 AGSVIGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRN  158 (194)
Q Consensus        79 ~~~~~~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~  158 (194)
                      ...+++|+.+++++|.+. .++  .+..+++|++|++++| .+++..+..+..+++|++|++++|++.+..|..+..+++
T Consensus        62 l~~l~~L~~L~l~~n~~~-~~~--~l~~l~~L~~L~l~~n-~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~  137 (197)
T 4ezg_A           62 IEYAHNIKDLTINNIHAT-NYN--PISGLSNLERLRIMGK-DVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPK  137 (197)
T ss_dssp             GGGCTTCSEEEEESCCCS-CCG--GGTTCTTCCEEEEECT-TCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSS
T ss_pred             HhcCCCCCEEEccCCCCC-cch--hhhcCCCCCEEEeECC-ccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCC
Confidence            345667888999999776 554  6889999999999999 888777889999999999999999999888899999999


Q ss_pred             cceeecccCc-cCCCCccccCCCCCCCeEeccCCcCC
Q 046655          159 LVHLDLSDNY-LSGYIPPTLGRLSKLEILNLSSNDLY  194 (194)
Q Consensus       159 L~~L~L~~N~-l~g~~p~~~~~l~~L~~L~ls~N~ls  194 (194)
                      |++|++++|+ ++ .+| .+..+++|++|++++|.++
T Consensus       138 L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~  172 (197)
T 4ezg_A          138 VNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVH  172 (197)
T ss_dssp             CCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCC
T ss_pred             CCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCc
Confidence            9999999998 66 676 6899999999999999874

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.56  E-value=3.3e-15  Score=105.97  Aligned_cols=120  Identities=18%  Similarity=0.193  Sum_probs=99.2

Q ss_pred             CCcccc-cceeCCCCCeeeeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcc
Q 046655           67 YHCKWT-GVSCNSAGSVIGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSL  145 (194)
Q Consensus        67 ~~c~~~-gv~c~~~~~~~~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l  145 (194)
                      ..|... +........+..|+.+++++|+++ .+  ..+..+++|++|++++| .+++.+|..+..+++|++|++++|++
T Consensus        25 ~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~-~~--~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~ls~N~i  100 (149)
T 2je0_A           25 DNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SI--ANLPKLNKLKKLELSDN-RVSGGLEVLAEKCPNLTHLNLSGNKI  100 (149)
T ss_dssp             TTCBCBTTBCCSCCTTCTTCCEEECTTSCCC-CC--TTCCCCTTCCEEECCSS-CCCSCTHHHHHHCTTCCEEECTTSCC
T ss_pred             cCCcCChhHHHHHHhhcCCCcEEECcCCCCC-Cc--hhhhcCCCCCEEECCCC-cccchHHHHhhhCCCCCEEECCCCcC
Confidence            344444 333445577888999999999999 44  36889999999999999 88877888888899999999999999


Q ss_pred             ccc-CchhhccCcccceeecccCccCCCCc---cccCCCCCCCeEeccC
Q 046655          146 TGI-IPLEMGRLRNLVHLDLSDNYLSGYIP---PTLGRLSKLEILNLSS  190 (194)
Q Consensus       146 ~~~-~p~~~~~l~~L~~L~L~~N~l~g~~p---~~~~~l~~L~~L~ls~  190 (194)
                      ++. .|..+..+++|++|++++|++++..+   ..+..+++|++|++++
T Consensus       101 ~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A          101 KDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             CSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             CChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence            963 34789999999999999999996544   4688999999999874

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.56  E-value=2.9e-15  Score=133.54  Aligned_cols=123  Identities=15%  Similarity=0.247  Sum_probs=109.0

Q ss_pred             CcccccceeCCCCCeeeeeeeeccCCcccc-----------------ccCccccC--CCCCccEEEecCCCCCcccCCcc
Q 046655           68 HCKWTGVSCNSAGSVIGVSLLWYENDNITG-----------------ELGRFKFS--CFPNLKSFKIHSNYLLSGSIPSE  128 (194)
Q Consensus        68 ~c~~~gv~c~~~~~~~~l~~l~l~~n~l~~-----------------~lp~~~~~--~l~~L~~L~l~~n~~l~~~~p~~  128 (194)
                      .+.+.|+ ....++++.|+.|++++|+++|                 .+| ..+.  .+++|++|++++| .+.+.+|..
T Consensus       434 ~N~L~~I-P~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP-~~l~f~~L~~L~~L~Ls~N-~l~~~iP~~  510 (876)
T 4ecn_A          434 TNRITFI-SKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYEN-EELSWSNLKDLTDVELYNC-PNMTQLPDF  510 (876)
T ss_dssp             SCEEEEE-CGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTT-SCCCGGGCTTCCEEEEESC-TTCCSCCGG
T ss_pred             cCcccch-hHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCC-hhhhhccCCCCCEEECcCC-CCCccChHH
Confidence            4567773 4557888999999999999997                 388 6777  9999999999999 889999999


Q ss_pred             ccCCCCCCEeecCCCc-ccc-cCchhhccCc-------ccceeecccCccCCCCcc--ccCCCCCCCeEeccCCcCC
Q 046655          129 IAAVSMLQTLELPSSS-LTG-IIPLEMGRLR-------NLVHLDLSDNYLSGYIPP--TLGRLSKLEILNLSSNDLY  194 (194)
Q Consensus       129 ~~~l~~L~~L~L~~n~-l~~-~~p~~~~~l~-------~L~~L~L~~N~l~g~~p~--~~~~l~~L~~L~ls~N~ls  194 (194)
                      +.++++|+.|++++|+ +++ .+|..++.++       +|+.|++++|+++ .+|.  .++++++|+.|++++|.++
T Consensus       511 l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~  586 (876)
T 4ecn_A          511 LYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR  586 (876)
T ss_dssp             GGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC
T ss_pred             HhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc
Confidence            9999999999999998 998 8898888776       9999999999999 8898  8999999999999999874

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.56  E-value=6.3e-15  Score=120.03  Aligned_cols=108  Identities=25%  Similarity=0.309  Sum_probs=72.8

Q ss_pred             eeeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchh-hccCcccce
Q 046655           83 IGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLE-MGRLRNLVH  161 (194)
Q Consensus        83 ~~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~-~~~l~~L~~  161 (194)
                      +.|+.+++++|++. .++...+..+++|++|++++| .+++..|..+..+++|++|++++|++. .+|.. |..+++|++
T Consensus        69 ~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~  145 (390)
T 3o6n_A           69 RQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFN-AIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTT  145 (390)
T ss_dssp             CCCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCE
T ss_pred             ccCcEEECCCCccc-ccChhhccCCCCcCEEECCCC-CCCcCCHHHhcCCCCCCEEECCCCccC-cCCHHHhcCCCCCcE
Confidence            34444666666666 444356667777777777777 666655666677777777777777777 44443 567777777


Q ss_pred             eecccCccCCCCccccCCCCCCCeEeccCCcC
Q 046655          162 LDLSDNYLSGYIPPTLGRLSKLEILNLSSNDL  193 (194)
Q Consensus       162 L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l  193 (194)
                      |++++|++++..|..+..+++|++|++++|.+
T Consensus       146 L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l  177 (390)
T 3o6n_A          146 LSMSNNNLERIEDDTFQATTSLQNLQLSSNRL  177 (390)
T ss_dssp             EECCSSCCCBCCTTTTSSCTTCCEEECCSSCC
T ss_pred             EECCCCccCccChhhccCCCCCCEEECCCCcC
Confidence            77777777765566677777777777777765

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.56  E-value=2.1e-14  Score=111.71  Aligned_cols=109  Identities=20%  Similarity=0.265  Sum_probs=97.6

Q ss_pred             eeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchhhccCcccceee
Q 046655           84 GVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLD  163 (194)
Q Consensus        84 ~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~  163 (194)
                      .++.+++++|+++ .++...+..+++|++|++++| .+++..+..|..+++|++|++++|.+.+..|..+.++++|++|+
T Consensus        29 ~l~~L~ls~n~l~-~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  106 (276)
T 2z62_A           29 STKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV  106 (276)
T ss_dssp             TCCEEECTTCCCC-EECTTTTTTCTTCSEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred             CccEEECCCCccc-ccCHhHhccccCCcEEECCCC-cCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEE
Confidence            4777899999999 565468999999999999999 88877777899999999999999999988778899999999999


Q ss_pred             cccCccCCCCccccCCCCCCCeEeccCCcCC
Q 046655          164 LSDNYLSGYIPPTLGRLSKLEILNLSSNDLY  194 (194)
Q Consensus       164 L~~N~l~g~~p~~~~~l~~L~~L~ls~N~ls  194 (194)
                      +++|++++..+..+.++++|++|++++|.++
T Consensus       107 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  137 (276)
T 2z62_A          107 AVETNLASLENFPIGHLKTLKELNVAHNLIQ  137 (276)
T ss_dssp             CTTSCCCCSTTCCCTTCTTCCEEECCSSCCC
T ss_pred             CCCCCccccCchhcccCCCCCEEECcCCccc
Confidence            9999999766667999999999999999874

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.56  E-value=4.6e-15  Score=122.86  Aligned_cols=124  Identities=22%  Similarity=0.269  Sum_probs=73.7

Q ss_pred             CCcccccceeCCCCCeeeeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCccc
Q 046655           67 YHCKWTGVSCNSAGSVIGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLT  146 (194)
Q Consensus        67 ~~c~~~gv~c~~~~~~~~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~  146 (194)
                      ..+...++....+..+.+|+.+++++|++. .++...|..+++|++|++++| .++...+..|..+++|++|++++|++.
T Consensus        72 ~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~-~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N~i~  149 (440)
T 3zyj_A           72 HENQIQIIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFNGLANLNTLELFDN-RLTTIPNGAFVYLSKLKELWLRNNPIE  149 (440)
T ss_dssp             CSCCCCEECTTTTSSCSSCCEEECCSSCCC-EECGGGGTTCSSCCEEECCSS-CCSSCCTTTSCSCSSCCEEECCSCCCC
T ss_pred             cCCcCCeeCHHHhhCCCCCCEEECCCCcCC-ccChhhccCCccCCEEECCCC-cCCeeCHhHhhccccCceeeCCCCccc
Confidence            345555665566677777777777777777 444356777777777777777 676544556777777777777777776


Q ss_pred             ccCchhhccCcccceeecccCccCCCCcc-ccCCCCCCCeEeccCCc
Q 046655          147 GIIPLEMGRLRNLVHLDLSDNYLSGYIPP-TLGRLSKLEILNLSSND  192 (194)
Q Consensus       147 ~~~p~~~~~l~~L~~L~L~~N~l~g~~p~-~~~~l~~L~~L~ls~N~  192 (194)
                      ...+..|..+++|+.|++++|+..+.++. .|..+++|++|++++|+
T Consensus       150 ~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~  196 (440)
T 3zyj_A          150 SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCN  196 (440)
T ss_dssp             EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSC
T ss_pred             ccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCc
Confidence            44444455555555555554222112222 34444444444444443

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.55  E-value=8.1e-15  Score=125.85  Aligned_cols=110  Identities=24%  Similarity=0.258  Sum_probs=80.9

Q ss_pred             eeeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchhhccCccccee
Q 046655           83 IGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHL  162 (194)
Q Consensus        83 ~~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L  162 (194)
                      +.|+.+++++|.+. .++...|..+++|++|++++| .+++..|..|+.+++|++|+|++|.+.+..+..|+.+++|++|
T Consensus        75 ~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L  152 (597)
T 3oja_B           75 RQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFN-AIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTL  152 (597)
T ss_dssp             CCCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             CCCcEEECCCCCCC-CCChHHhcCCCCCCEEECCCC-cCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEE
Confidence            34455777777777 343257777888888888888 7777666667788888888888888874333446778888888


Q ss_pred             ecccCccCCCCccccCCCCCCCeEeccCCcCC
Q 046655          163 DLSDNYLSGYIPPTLGRLSKLEILNLSSNDLY  194 (194)
Q Consensus       163 ~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~ls  194 (194)
                      ++++|.+++..|..|..+++|++|++++|.++
T Consensus       153 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  184 (597)
T 3oja_B          153 SMSNNNLERIEDDTFQATTSLQNLQLSSNRLT  184 (597)
T ss_dssp             ECCSSCCCBCCTTTTTTCTTCCEEECTTSCCS
T ss_pred             EeeCCcCCCCChhhhhcCCcCcEEECcCCCCC
Confidence            88888888777777888888888888888763

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.55  E-value=1.4e-14  Score=120.77  Aligned_cols=124  Identities=18%  Similarity=0.186  Sum_probs=100.6

Q ss_pred             CcccccceeCCCCCeeeeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccc
Q 046655           68 HCKWTGVSCNSAGSVIGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTG  147 (194)
Q Consensus        68 ~c~~~gv~c~~~~~~~~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~  147 (194)
                      .|...++....++.+.+|+.+++++|+++ .+|...|..+++|++|++++| .+.+..+..|..+++|++|++++|.+.+
T Consensus        65 ~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~l~~n~l~~  142 (477)
T 2id5_A           65 ENIVSAVEPGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKLDISEN-KIVILLDYMFQDLYNLKSLEVGDNDLVY  142 (477)
T ss_dssp             TSCCCEECTTTTTTCTTCCEEECCSSCCC-SCCTTSSTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEEECCTTCCE
T ss_pred             CCccCEeChhhhhCCccCCEEECCCCcCC-ccCcccccCCCCCCEEECCCC-ccccCChhHccccccCCEEECCCCccce
Confidence            45566666667788888889999999988 676456788899999999999 8887778888888999999999998887


Q ss_pred             cCchhhccCcccceeecccCccCCCCccccCCCCCCCeEeccCCcC
Q 046655          148 IIPLEMGRLRNLVHLDLSDNYLSGYIPPTLGRLSKLEILNLSSNDL  193 (194)
Q Consensus       148 ~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l  193 (194)
                      ..|..|.++++|+.|++++|++++..+..+..+++|+.|++++|.+
T Consensus       143 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i  188 (477)
T 2id5_A          143 ISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNI  188 (477)
T ss_dssp             ECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCC
T ss_pred             eChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcC
Confidence            7777888888888888888888865555677788888888877765

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.55  E-value=1.8e-14  Score=123.41  Aligned_cols=124  Identities=16%  Similarity=0.142  Sum_probs=70.6

Q ss_pred             CcccccceeCCCCCeeeeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccc
Q 046655           68 HCKWTGVSCNSAGSVIGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTG  147 (194)
Q Consensus        68 ~c~~~gv~c~~~~~~~~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~  147 (194)
                      .+...++....++++++|+.+++++|++.+..| ..|..+++|++|++++| .+++..|..|..+++|++|++++|++++
T Consensus        42 ~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~i~~  119 (606)
T 3t6q_A           42 FNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHE-DTFQSQHRLDTLVLTAN-PLIFMAETALSGPKALKHLFFIQTGISS  119 (606)
T ss_dssp             TCCCSEECTTTSTTCTTCSEEECTTCCCCEECT-TTTTTCTTCCEEECTTC-CCSEECTTTTSSCTTCCEEECTTSCCSC
T ss_pred             CCccCcCChhHhccCccceEEECCCCccceeCh-hhccCccccCeeeCCCC-cccccChhhhcccccccEeeccccCccc
Confidence            344444444455556666666666666663333 45666666666666666 5555555566666666666666666664


Q ss_pred             cCchhhccCcccceeecccCccCCCCccccCCCCCCCeEeccCCcC
Q 046655          148 IIPLEMGRLRNLVHLDLSDNYLSGYIPPTLGRLSKLEILNLSSNDL  193 (194)
Q Consensus       148 ~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l  193 (194)
                      ..|..++.+++|++|++++|++++..++.+..+++|++|++++|.+
T Consensus       120 l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l  165 (606)
T 3t6q_A          120 IDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAI  165 (606)
T ss_dssp             GGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCC
T ss_pred             CCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcc
Confidence            4445556666666666666666642222333366666666666654

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.55  E-value=1.4e-14  Score=122.93  Aligned_cols=114  Identities=19%  Similarity=0.235  Sum_probs=94.0

Q ss_pred             CCCeeeeeeeeccCCccccccCccccCCCCCccEEEecCCCCCc-ccCCccccCCCCCCEeecCCCcccccCchhhccCc
Q 046655           79 AGSVIGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLS-GSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLR  157 (194)
Q Consensus        79 ~~~~~~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~-~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~  157 (194)
                      ...+++|+.+++++|.+.+..| ..+..+++|++|++++| .+. +.+|..+..+++|++|++++|++++..|..+..++
T Consensus       417 ~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n-~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~  494 (570)
T 2z63_A          417 FLSLRNLIYLDISHTHTRVAFN-GIFNGLSSLEVLKMAGN-SFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLS  494 (570)
T ss_dssp             TTTCTTCCEEECTTSCCEECCT-TTTTTCTTCCEEECTTC-EEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred             hhcCCCCCEEeCcCCcccccch-hhhhcCCcCcEEECcCC-cCccccchhhhhcccCCCEEECCCCccccCChhhhhccc
Confidence            4566777778888888886666 67788888888888888 666 56788888888999999999998877788888889


Q ss_pred             ccceeecccCccCCCCccccCCCCCCCeEeccCCcCC
Q 046655          158 NLVHLDLSDNYLSGYIPPTLGRLSKLEILNLSSNDLY  194 (194)
Q Consensus       158 ~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~ls  194 (194)
                      +|+.|++++|++++..|..+.++++|+.|++++|+++
T Consensus       495 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~  531 (570)
T 2z63_A          495 SLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWD  531 (570)
T ss_dssp             TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             CCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCccc
Confidence            9999999999998776777888899999999998764

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.55  E-value=2.4e-14  Score=118.53  Aligned_cols=110  Identities=22%  Similarity=0.252  Sum_probs=71.4

Q ss_pred             CCeeeeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchhhccCccc
Q 046655           80 GSVIGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNL  159 (194)
Q Consensus        80 ~~~~~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L  159 (194)
                      ..+.+|+.+++++|+++ .+|  .+..+++|++|++++| .+++..|..|..+++|++|++++|++.+..|..|..+++|
T Consensus       182 ~~l~~L~~L~L~~n~l~-~~~--~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  257 (440)
T 3zyj_A          182 EGLSNLRYLNLAMCNLR-EIP--NLTPLIKLDELDLSGN-HLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSL  257 (440)
T ss_dssp             TTCSSCCEEECTTSCCS-SCC--CCTTCSSCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTC
T ss_pred             hcccccCeecCCCCcCc-ccc--ccCCCcccCEEECCCC-ccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCC
Confidence            34445555555666555 555  3556666666666666 6666556666667777777777777766666666677777


Q ss_pred             ceeecccCccCCCCccccCCCCCCCeEeccCCcC
Q 046655          160 VHLDLSDNYLSGYIPPTLGRLSKLEILNLSSNDL  193 (194)
Q Consensus       160 ~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l  193 (194)
                      +.|++++|++++..+..|..+++|+.|++++|++
T Consensus       258 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~  291 (440)
T 3zyj_A          258 VEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPW  291 (440)
T ss_dssp             CEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCE
T ss_pred             CEEECCCCCCCccChhHhccccCCCEEEcCCCCc
Confidence            7777777777755455566677777777777764

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.54  E-value=3.7e-14  Score=112.99  Aligned_cols=123  Identities=24%  Similarity=0.366  Sum_probs=80.8

Q ss_pred             CCCCcccccceeCCCC-------CeeeeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCE
Q 046655           65 TSYHCKWTGVSCNSAG-------SVIGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQT  137 (194)
Q Consensus        65 ~~~~c~~~gv~c~~~~-------~~~~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~  137 (194)
                      ....|.+..+.|...+       -...++.+++++|+++ .++...+..+++|++|++++| .+++..|..|..+++|++
T Consensus        27 ~~c~c~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~  104 (330)
T 1xku_A           27 FRCQCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINN-KISKISPGAFAPLVKLER  104 (330)
T ss_dssp             TTCEEETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCC-CBCTTTTTTCTTCCEEECCSS-CCCCBCTTTTTTCTTCCE
T ss_pred             CCCcCCCeEEEecCCCccccCccCCCCCeEEECCCCcCC-EeChhhhccCCCCCEEECCCC-cCCeeCHHHhcCCCCCCE
Confidence            3455778888886311       1234666888888888 555357888888888888888 788777888888888888


Q ss_pred             eecCCCcccccCchhhccCcccceeecccCccCCCCccccCCCCCCCeEeccCCc
Q 046655          138 LELPSSSLTGIIPLEMGRLRNLVHLDLSDNYLSGYIPPTLGRLSKLEILNLSSND  192 (194)
Q Consensus       138 L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~  192 (194)
                      |++++|+++ .+|..+.  ++|+.|++++|++++..+..+.++++|++|++++|.
T Consensus       105 L~Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~  156 (330)
T 1xku_A          105 LYLSKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNP  156 (330)
T ss_dssp             EECCSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSC
T ss_pred             EECCCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCc
Confidence            888888877 4554432  455555555555554444444555555555555544

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.54  E-value=9.5e-15  Score=125.44  Aligned_cols=109  Identities=17%  Similarity=0.193  Sum_probs=73.3

Q ss_pred             eeeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchhhccCccccee
Q 046655           83 IGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHL  162 (194)
Q Consensus        83 ~~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L  162 (194)
                      ..++.+++++|.+. .+|...+..+++|++|++++| .+++..|..|..+++|++|+|++|.+.+..|..|+.+++|++|
T Consensus        51 ~~l~~l~l~~~~l~-~lp~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  128 (597)
T 3oja_B           51 NNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL  128 (597)
T ss_dssp             CCCSEEEESSCEES-EECTHHHHHCCCCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             CCceEEEeeCCCCC-CcCHHHHccCCCCcEEECCCC-CCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence            44455666676666 566444566777777777777 6666666667777777777777777776555666777777777


Q ss_pred             ecccCccCCCCccccCCCCCCCeEeccCCcC
Q 046655          163 DLSDNYLSGYIPPTLGRLSKLEILNLSSNDL  193 (194)
Q Consensus       163 ~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l  193 (194)
                      ++++|.+++..+..|..+++|++|++++|.+
T Consensus       129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l  159 (597)
T 3oja_B          129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNL  159 (597)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             EeeCCCCCCCCHHHhccCCCCCEEEeeCCcC
Confidence            7777777743333356777777777777765

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.54  E-value=3.5e-14  Score=113.29  Aligned_cols=123  Identities=24%  Similarity=0.373  Sum_probs=99.8

Q ss_pred             CCCcccccceeCCCC-------CeeeeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEe
Q 046655           66 SYHCKWTGVSCNSAG-------SVIGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTL  138 (194)
Q Consensus        66 ~~~c~~~gv~c~~~~-------~~~~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L  138 (194)
                      ...|.|..+.|...+       -...++.+++++|++. .++...+..+++|++|++++| .+++..|..|..+++|++|
T Consensus        30 ~c~c~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~-~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L  107 (332)
T 2ft3_A           30 GCHCHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNN-KISKIHEKAFSPLRKLQKL  107 (332)
T ss_dssp             SCEEETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSS-CCCEECGGGSTTCTTCCEE
T ss_pred             CCcccCCEEECCCCCccccCCCCCCCCeEEECCCCcCC-ccCHhHhhCCCCCcEEECCCC-ccCccCHhHhhCcCCCCEE
Confidence            345788888886311       1235677899999999 554368999999999999999 8888778899999999999


Q ss_pred             ecCCCcccccCchhhccCcccceeecccCccCCCCccccCCCCCCCeEeccCCcC
Q 046655          139 ELPSSSLTGIIPLEMGRLRNLVHLDLSDNYLSGYIPPTLGRLSKLEILNLSSNDL  193 (194)
Q Consensus       139 ~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l  193 (194)
                      ++++|++. .+|..+.  ++|++|++++|++++..+..+.++++|++|++++|.+
T Consensus       108 ~L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l  159 (332)
T 2ft3_A          108 YISKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPL  159 (332)
T ss_dssp             ECCSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCC
T ss_pred             ECCCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCcc
Confidence            99999998 6776655  7899999999999865555688899999999998876

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.54  E-value=1.3e-14  Score=125.97  Aligned_cols=123  Identities=25%  Similarity=0.177  Sum_probs=82.0

Q ss_pred             cccccceeCCCCCeeeeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCccccc
Q 046655           69 CKWTGVSCNSAGSVIGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGI  148 (194)
Q Consensus        69 c~~~gv~c~~~~~~~~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~  148 (194)
                      +...++....+++++.|+.+++++|++.+..| ..+..+++|++|++++| .+++..+..|+++++|++|++++|++.+.
T Consensus        35 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n~l~~~  112 (680)
T 1ziw_A           35 NQLRRLPAANFTRYSQLTSLDVGFNTISKLEP-ELCQKLPMLKVLNLQHN-ELSQLSDKTFAFCTNLTELHLMSNSIQKI  112 (680)
T ss_dssp             SCCCCCCGGGGGGGTTCSEEECCSSCCCCCCT-THHHHCTTCCEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCCC
T ss_pred             CCCCCcCHHHHhCCCcCcEEECCCCccCccCH-HHHhcccCcCEEECCCC-ccCccChhhhccCCCCCEEECCCCccCcc
Confidence            34444444445556666667777777774444 56667777777777777 66643333577777777777777777655


Q ss_pred             CchhhccCcccceeecccCccCCCCccccCCCCCCCeEeccCCcC
Q 046655          149 IPLEMGRLRNLVHLDLSDNYLSGYIPPTLGRLSKLEILNLSSNDL  193 (194)
Q Consensus       149 ~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l  193 (194)
                      .|..|+++++|++|++++|++++..|..+.++++|++|++++|.+
T Consensus       113 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l  157 (680)
T 1ziw_A          113 KNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKI  157 (680)
T ss_dssp             CSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCC
T ss_pred             ChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcc
Confidence            556677777777777777777766666677777777777777755

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.54  E-value=2.8e-14  Score=122.15  Aligned_cols=109  Identities=19%  Similarity=0.121  Sum_probs=99.4

Q ss_pred             eeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchhhccCcccceee
Q 046655           84 GVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLD  163 (194)
Q Consensus        84 ~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~  163 (194)
                      .++.+++++|++++..| ..|..+++|++|++++| .+.+..|..|.++++|++|++++|++.+..|..|+++++|++|+
T Consensus        34 ~l~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  111 (606)
T 3t6q_A           34 STECLEFSFNVLPTIQN-TTFSRLINLTFLDLTRC-QIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLF  111 (606)
T ss_dssp             TCCEEECTTCCCSEECT-TTSTTCTTCSEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEE
T ss_pred             cCcEEEccCCccCcCCh-hHhccCccceEEECCCC-ccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEee
Confidence            46678999999994445 78999999999999999 88888899999999999999999999988899999999999999


Q ss_pred             cccCccCCCCccccCCCCCCCeEeccCCcCC
Q 046655          164 LSDNYLSGYIPPTLGRLSKLEILNLSSNDLY  194 (194)
Q Consensus       164 L~~N~l~g~~p~~~~~l~~L~~L~ls~N~ls  194 (194)
                      +++|++++..|..++++++|++|++++|.++
T Consensus       112 L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~  142 (606)
T 3t6q_A          112 FIQTGISSIDFIPLHNQKTLESLYLGSNHIS  142 (606)
T ss_dssp             CTTSCCSCGGGSCCTTCTTCCEEECCSSCCC
T ss_pred             ccccCcccCCcchhccCCcccEEECCCCccc
Confidence            9999999766788999999999999999874

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.54  E-value=2.4e-14  Score=109.20  Aligned_cols=103  Identities=20%  Similarity=0.283  Sum_probs=54.6

Q ss_pred             eeeeeccCCccccccCccccCCCCCccEEEecCCCC-CcccCCccccCCCCCCEeecCC-CcccccCchhhccCccccee
Q 046655           85 VSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYL-LSGSIPSEIAAVSMLQTLELPS-SSLTGIIPLEMGRLRNLVHL  162 (194)
Q Consensus        85 l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~-l~~~~p~~~~~l~~L~~L~L~~-n~l~~~~p~~~~~l~~L~~L  162 (194)
                      ++.+++++|+++ .++...+..+++|++|++++| . ++...+..|..+++|++|++++ |++++..+..|.++++|++|
T Consensus        33 l~~L~l~~n~l~-~i~~~~~~~l~~L~~L~l~~n-~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L  110 (239)
T 2xwt_C           33 TQTLKLIETHLR-TIPSHAFSNLPNISRIYVSID-VTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL  110 (239)
T ss_dssp             CCEEEEESCCCS-EECTTTTTTCTTCCEEEEECC-SSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred             ccEEEEeCCcce-EECHHHccCCCCCcEEeCCCC-CCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence            444555666655 444345555666666666666 3 4443334555566666666665 55554433445555555555


Q ss_pred             ecccCccCCCCccccCCCCCCC---eEeccCC
Q 046655          163 DLSDNYLSGYIPPTLGRLSKLE---ILNLSSN  191 (194)
Q Consensus       163 ~L~~N~l~g~~p~~~~~l~~L~---~L~ls~N  191 (194)
                      ++++|++++ +|. +..+++|+   +|++++|
T Consensus       111 ~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N  140 (239)
T 2xwt_C          111 GIFNTGLKM-FPD-LTKVYSTDIFFILEITDN  140 (239)
T ss_dssp             EEEEECCCS-CCC-CTTCCBCCSEEEEEEESC
T ss_pred             eCCCCCCcc-ccc-cccccccccccEEECCCC
Confidence            555555553 443 44444444   5555544

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.53  E-value=2e-14  Score=104.91  Aligned_cols=104  Identities=17%  Similarity=0.229  Sum_probs=78.8

Q ss_pred             eeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCch--hhccCcccce
Q 046655           84 GVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPL--EMGRLRNLVH  161 (194)
Q Consensus        84 ~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~--~~~~l~~L~~  161 (194)
                      .|+.+++++|+++ .++  .+..+++|++|++++| .+++..+..+..+++|++|++++|++. .+|.  .+..+++|+.
T Consensus        43 ~L~~L~Ls~N~l~-~~~--~l~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~  117 (176)
T 1a9n_A           43 QFDAIDFSDNEIR-KLD--GFPLLRRLKTLLVNNN-RICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTY  117 (176)
T ss_dssp             CCSEEECCSSCCC-EEC--CCCCCSSCCEEECCSS-CCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCE
T ss_pred             CCCEEECCCCCCC-ccc--ccccCCCCCEEECCCC-cccccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCE
Confidence            6777888888888 453  5777888888888888 777543344478888888888888886 5665  6778888888


Q ss_pred             eecccCccCCCCccc----cCCCCCCCeEeccCCcC
Q 046655          162 LDLSDNYLSGYIPPT----LGRLSKLEILNLSSNDL  193 (194)
Q Consensus       162 L~L~~N~l~g~~p~~----~~~l~~L~~L~ls~N~l  193 (194)
                      |++++|.++ .+|..    +..+++|++||+++|.+
T Consensus       118 L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~  152 (176)
T 1a9n_A          118 LCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKL  152 (176)
T ss_dssp             EECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred             EEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCH
Confidence            888888887 56664    77888888888887753

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.53  E-value=2e-14  Score=128.01  Aligned_cols=120  Identities=23%  Similarity=0.214  Sum_probs=102.5

Q ss_pred             cccccceeCCCCCeeeeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccC-CccccCCCCCCEeecCCCcccc
Q 046655           69 CKWTGVSCNSAGSVIGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSI-PSEIAAVSMLQTLELPSSSLTG  147 (194)
Q Consensus        69 c~~~gv~c~~~~~~~~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~-p~~~~~l~~L~~L~L~~n~l~~  147 (194)
                      |.|..|.+    -...++.+++++|.+++..+ ..|..+++|++|++++| ...+.+ |..|.++++|++|+|++|.+.+
T Consensus        14 ~~L~~vP~----lp~~l~~LdLs~N~i~~i~~-~~~~~l~~L~~LdLs~n-~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~   87 (844)
T 3j0a_A           14 CNLTQVPQ----VLNTTERLLLSFNYIRTVTA-SSFPFLEQLQLLELGSQ-YTPLTIDKEAFRNLPNLRILDLGSSKIYF   87 (844)
T ss_dssp             CCSSCCCS----SCTTCCEEEEESCCCCEECS-SSCSSCCSCSEEEECTT-CCCCEECTTTTSSCTTCCEEECTTCCCCE
T ss_pred             CCCCCCCC----CCCCcCEEECCCCcCCccCh-hHCcccccCeEEeCCCC-CCccccCHHHhcCCCCCCEEECCCCcCcc
Confidence            44555554    23456667889999995555 78999999999999999 555555 7889999999999999999998


Q ss_pred             cCchhhccCcccceeecccCccCCCCccc--cCCCCCCCeEeccCCcCC
Q 046655          148 IIPLEMGRLRNLVHLDLSDNYLSGYIPPT--LGRLSKLEILNLSSNDLY  194 (194)
Q Consensus       148 ~~p~~~~~l~~L~~L~L~~N~l~g~~p~~--~~~l~~L~~L~ls~N~ls  194 (194)
                      ..|..|+++++|++|++++|++++.+|..  +.++++|++|++++|.++
T Consensus        88 ~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~  136 (844)
T 3j0a_A           88 LHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIR  136 (844)
T ss_dssp             ECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCC
T ss_pred             cCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCccc
Confidence            88999999999999999999999877765  899999999999999874

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.53  E-value=4.8e-15  Score=117.58  Aligned_cols=111  Identities=18%  Similarity=0.155  Sum_probs=58.7

Q ss_pred             CCeeeeeeeeccCCccccccCccccCCC-----CCccEEEecCCCCCcccCCccccCCCCCCEeecCCCccccc--Cchh
Q 046655           80 GSVIGVSLLWYENDNITGELGRFKFSCF-----PNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGI--IPLE  152 (194)
Q Consensus        80 ~~~~~l~~l~l~~n~l~~~lp~~~~~~l-----~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~--~p~~  152 (194)
                      +.++.|+.+++++|++++. | ..+..+     ++|++|++++| .+.+..|..|..+++|++|++++|++.+.  +|..
T Consensus       118 ~~l~~L~~L~Ls~N~l~~~-~-~~~~~l~~~~~~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~  194 (312)
T 1wwl_A          118 ATGPDLNILNLRNVSWATR-D-AWLAELQQWLKPGLKVLSIAQA-HSLNFSCEQVRVFPALSTLDLSDNPELGERGLISA  194 (312)
T ss_dssp             CCSCCCSEEEEESCBCSSS-S-SHHHHHHTTCCTTCCEEEEESC-SCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHH
T ss_pred             hcCCCccEEEccCCCCcch-h-HHHHHHHHhhcCCCcEEEeeCC-CCccchHHHhccCCCCCEEECCCCCcCcchHHHHH
Confidence            4455555555556555533 4 344433     55666666666 55554445556666666666666665443  2233


Q ss_pred             h--ccCcccceeecccCccCC--CCc-cccCCCCCCCeEeccCCcC
Q 046655          153 M--GRLRNLVHLDLSDNYLSG--YIP-PTLGRLSKLEILNLSSNDL  193 (194)
Q Consensus       153 ~--~~l~~L~~L~L~~N~l~g--~~p-~~~~~l~~L~~L~ls~N~l  193 (194)
                      +  ..+++|++|++++|++++  .++ ..+..+++|++|++++|++
T Consensus       195 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l  240 (312)
T 1wwl_A          195 LCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSL  240 (312)
T ss_dssp             SCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCC
T ss_pred             HHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcC
Confidence            3  555666666666666652  111 1233555666666666654

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.53  E-value=4.5e-14  Score=114.99  Aligned_cols=109  Identities=18%  Similarity=0.234  Sum_probs=77.5

Q ss_pred             eeeeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchhhccCcccce
Q 046655           82 VIGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVH  161 (194)
Q Consensus        82 ~~~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~  161 (194)
                      +..++.+++++|.+. .+|...+..+++|++|++++| .+++..+..|..+++|++|++++|++.+..|..++.+++|++
T Consensus        44 l~~l~~l~l~~~~l~-~l~~~~~~~l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  121 (390)
T 3o6n_A           44 LNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV  121 (390)
T ss_dssp             GCCCSEEEEESCEES-EECTHHHHHCCCCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             cCCceEEEecCCchh-hCChhHhcccccCcEEECCCC-cccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCE
Confidence            355566777777776 666444667777777777777 676655667777777778888777777666666777777777


Q ss_pred             eecccCccCCCCccc-cCCCCCCCeEeccCCcC
Q 046655          162 LDLSDNYLSGYIPPT-LGRLSKLEILNLSSNDL  193 (194)
Q Consensus       162 L~L~~N~l~g~~p~~-~~~l~~L~~L~ls~N~l  193 (194)
                      |++++|+++ .+|.. |.++++|++|++++|.+
T Consensus       122 L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l  153 (390)
T 3o6n_A          122 LVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNL  153 (390)
T ss_dssp             EECCSSCCC-CCCTTTTTTCTTCCEEECCSSCC
T ss_pred             EECCCCccC-cCCHHHhcCCCCCcEEECCCCcc
Confidence            887777777 44444 57777777777777765

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.53  E-value=1.8e-14  Score=126.40  Aligned_cols=154  Identities=18%  Similarity=0.123  Sum_probs=93.2

Q ss_pred             cCCCCchhHHHHHHHhhcCC-CCCCCCCCCCCCCCCcccccceeCCCCCeeeeee---------------eeccCCcccc
Q 046655           34 AAGLLSSPKLLEREALLATG-WWVNNWATGNYTSYHCKWTGVSCNSAGSVIGVSL---------------LWYENDNITG   97 (194)
Q Consensus        34 ~~~~~~~~l~~~~~~~~~~~-~~~~~w~~~~~~~~~c~~~gv~c~~~~~~~~l~~---------------l~l~~n~l~~   97 (194)
                      ....+..++.++........ .....|.  ......+.|.++.+.. .+++.+.+               +.|+.|.|.+
T Consensus       129 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~s~-~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~  205 (727)
T 4b8c_D          129 LVDCTKQALMEMADTLTDSKTAKKQQPT--GDSTPSGTATNSAVST-PLTPKIELFANGKDEANQALLQHKKLSQYSIDE  205 (727)
T ss_dssp             ---CCCHHHHHHHHHHHHHHTTC---------------------------------------------------------
T ss_pred             ccccchhhhhhhhhhcccccCcccCCCc--CCCCccccCCCceecC-CccceEEeeCCCCCcchhhHhhcCccCcccccC
Confidence            34666788888887765443 2234562  3344556677665543 22333222               4444444432


Q ss_pred             --------ccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchhhccCcccceeecccCcc
Q 046655           98 --------ELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLSDNYL  169 (194)
Q Consensus        98 --------~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l  169 (194)
                              .++...+..++.|+.|+|++| .+. .+|..+..+++|++|+|++|.++ .+|..|+.+++|++|+|++|+|
T Consensus       206 ~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n-~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l  282 (727)
T 4b8c_D          206 DDDIENRMVMPKDSKYDDQLWHALDLSNL-QIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRL  282 (727)
T ss_dssp             ----------------CCCCCCEEECTTS-CCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCC
T ss_pred             ccccccceecChhhhccCCCCcEEECCCC-CCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcC
Confidence                    122367888999999999999 777 68888889999999999999999 8999999999999999999999


Q ss_pred             CCCCccccCCCCCCCeEeccCCcCC
Q 046655          170 SGYIPPTLGRLSKLEILNLSSNDLY  194 (194)
Q Consensus       170 ~g~~p~~~~~l~~L~~L~ls~N~ls  194 (194)
                      + .+|..|+.+++|++|+|++|.|+
T Consensus       283 ~-~lp~~~~~l~~L~~L~L~~N~l~  306 (727)
T 4b8c_D          283 T-SLPAELGSCFQLKYFYFFDNMVT  306 (727)
T ss_dssp             S-SCCSSGGGGTTCSEEECCSSCCC
T ss_pred             C-ccChhhcCCCCCCEEECCCCCCC
Confidence            9 88999999999999999999874

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.53  E-value=1.1e-14  Score=111.09  Aligned_cols=123  Identities=15%  Similarity=0.262  Sum_probs=92.9

Q ss_pred             CcccccceeCCCCCeeeeeeeeccCCc-cccccCccccCCCCCccEEEecC-CCCCcccCCccccCCCCCCEeecCCCcc
Q 046655           68 HCKWTGVSCNSAGSVIGVSLLWYENDN-ITGELGRFKFSCFPNLKSFKIHS-NYLLSGSIPSEIAAVSMLQTLELPSSSL  145 (194)
Q Consensus        68 ~c~~~gv~c~~~~~~~~l~~l~l~~n~-l~~~lp~~~~~~l~~L~~L~l~~-n~~l~~~~p~~~~~l~~L~~L~L~~n~l  145 (194)
                      .+...++....+..+++|+.+++++|+ ++ .++...|..+++|++|++++ | .+++..+..|..+++|++|++++|++
T Consensus        40 ~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~-~i~~~~f~~l~~L~~L~l~~~n-~l~~i~~~~f~~l~~L~~L~l~~n~l  117 (239)
T 2xwt_C           40 ETHLRTIPSHAFSNLPNISRIYVSIDVTLQ-QLESHSFYNLSKVTHIEIRNTR-NLTYIDPDALKELPLLKFLGIFNTGL  117 (239)
T ss_dssp             SCCCSEECTTTTTTCTTCCEEEEECCSSCC-EECTTTEESCTTCCEEEEEEET-TCCEECTTSEECCTTCCEEEEEEECC
T ss_pred             CCcceEECHHHccCCCCCcEEeCCCCCCcc-eeCHhHcCCCcCCcEEECCCCC-CeeEcCHHHhCCCCCCCEEeCCCCCC
Confidence            345555555566777888888888886 76 66645788888888888887 7 77766666788888888888888888


Q ss_pred             cccCchhhccCcccc---eeecccC-ccCCCCccccCCCCCCC-eEeccCCcCC
Q 046655          146 TGIIPLEMGRLRNLV---HLDLSDN-YLSGYIPPTLGRLSKLE-ILNLSSNDLY  194 (194)
Q Consensus       146 ~~~~p~~~~~l~~L~---~L~L~~N-~l~g~~p~~~~~l~~L~-~L~ls~N~ls  194 (194)
                      ++ +|. +..+++|+   .|++++| ++++..+..|..+++|+ +|++++|+++
T Consensus       118 ~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~  169 (239)
T 2xwt_C          118 KM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT  169 (239)
T ss_dssp             CS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC
T ss_pred             cc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc
Confidence            84 665 77777777   8888888 78755555677888888 8888887763

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.52  E-value=8.4e-14  Score=101.51  Aligned_cols=104  Identities=18%  Similarity=0.234  Sum_probs=88.5

Q ss_pred             eeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchhhccCcccceeecc
Q 046655           86 SLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLS  165 (194)
Q Consensus        86 ~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~  165 (194)
                      ..++++++++. .+| ..+  .+.+++|++++| .+++..+..+..+++|++|++++|++++..+..+..+++|+.|+++
T Consensus        10 ~~l~~~~~~l~-~~p-~~~--~~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~   84 (177)
T 2o6r_A           10 TEIRCNSKGLT-SVP-TGI--PSSATRLELESN-KLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLH   84 (177)
T ss_dssp             TEEECCSSCCS-SCC-TTC--CTTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CEEEecCCCCc-cCC-CCC--CCCCcEEEeCCC-cccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECC
Confidence            34667888888 787 333  478999999999 8887666678999999999999999996655668999999999999


Q ss_pred             cCccCCCCccccCCCCCCCeEeccCCcCC
Q 046655          166 DNYLSGYIPPTLGRLSKLEILNLSSNDLY  194 (194)
Q Consensus       166 ~N~l~g~~p~~~~~l~~L~~L~ls~N~ls  194 (194)
                      +|++++..+..+..+++|++|++++|.++
T Consensus        85 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~  113 (177)
T 2o6r_A           85 ENKLQSLPNGVFDKLTQLKELALDTNQLK  113 (177)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred             CCCccccCHHHhhCCcccCEEECcCCcce
Confidence            99999766666899999999999999874

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.52  E-value=3.7e-14  Score=113.03  Aligned_cols=108  Identities=19%  Similarity=0.290  Sum_probs=70.0

Q ss_pred             CeeeeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchhhccCcccc
Q 046655           81 SVIGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLV  160 (194)
Q Consensus        81 ~~~~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~  160 (194)
                      .+++|+.+++++|+++ .+| ..+  .++|++|++++| .+++..+..+..+++|++|++++|++.+..+..+..+++|+
T Consensus       169 ~l~~L~~L~l~~n~l~-~l~-~~~--~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  243 (330)
T 1xku_A          169 GMKKLSYIRIADTNIT-TIP-QGL--PPSLTELHLDGN-KITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLR  243 (330)
T ss_dssp             GCTTCCEEECCSSCCC-SCC-SSC--CTTCSEEECTTS-CCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCC
T ss_pred             CCCCcCEEECCCCccc-cCC-ccc--cccCCEEECCCC-cCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCC
Confidence            3444555555555555 454 222  256666666666 66655566677777777777777777765555677777777


Q ss_pred             eeecccCccCCCCccccCCCCCCCeEeccCCcCC
Q 046655          161 HLDLSDNYLSGYIPPTLGRLSKLEILNLSSNDLY  194 (194)
Q Consensus       161 ~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~ls  194 (194)
                      .|++++|+++ .+|..+..+++|++|++++|+|+
T Consensus       244 ~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~  276 (330)
T 1xku_A          244 ELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS  276 (330)
T ss_dssp             EEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCC
T ss_pred             EEECCCCcCc-cCChhhccCCCcCEEECCCCcCC
Confidence            7777777777 66767777777777777777653

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.52  E-value=4.2e-14  Score=117.46  Aligned_cols=104  Identities=22%  Similarity=0.185  Sum_probs=54.1

Q ss_pred             eeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchhhccCcccceee
Q 046655           84 GVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLD  163 (194)
Q Consensus        84 ~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~  163 (194)
                      .++.+++++|++.+..+ ..|..+++|++|++++| .+++..+..|.++++|++|+|++|++++..+..|..+++|++|+
T Consensus        76 ~l~~L~L~~n~i~~~~~-~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  153 (452)
T 3zyi_A           76 NTRYLNLMENNIQMIQA-DTFRHLHHLEVLQLGRN-SIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELW  153 (452)
T ss_dssp             TCSEEECCSSCCCEECT-TTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEE
T ss_pred             CccEEECcCCcCceECH-HHcCCCCCCCEEECCCC-ccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEE
Confidence            34445556666653223 45555666666666666 55555555555566666666666665533333455555566666


Q ss_pred             cccCccCCCCccccCCCCCCCeEecc
Q 046655          164 LSDNYLSGYIPPTLGRLSKLEILNLS  189 (194)
Q Consensus       164 L~~N~l~g~~p~~~~~l~~L~~L~ls  189 (194)
                      +++|++++..+..|.++++|++|+++
T Consensus       154 L~~N~l~~~~~~~~~~l~~L~~L~l~  179 (452)
T 3zyi_A          154 LRNNPIESIPSYAFNRVPSLMRLDLG  179 (452)
T ss_dssp             CCSCCCCEECTTTTTTCTTCCEEECC
T ss_pred             CCCCCcceeCHhHHhcCCcccEEeCC
Confidence            66555553333233344444444443

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.51  E-value=1.3e-14  Score=122.84  Aligned_cols=125  Identities=19%  Similarity=0.170  Sum_probs=82.6

Q ss_pred             CCcccccceeCCCCCeeeeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCccc
Q 046655           67 YHCKWTGVSCNSAGSVIGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLT  146 (194)
Q Consensus        67 ~~c~~~gv~c~~~~~~~~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~  146 (194)
                      ..|...++....+..++.|+.+++++|++.+..| ..+..+++|++|++++| .+++..|..|+.+++|++|++++|.+.
T Consensus        34 s~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~  111 (549)
T 2z81_A           34 SFNKITYIGHGDLRACANLQVLILKSSRINTIEG-DAFYSLGSLEHLDLSDN-HLSSLSSSWFGPLSSLKYLNLMGNPYQ  111 (549)
T ss_dssp             CSSCCCEECSSTTSSCTTCCEEECTTSCCCEECT-TTTTTCTTCCEEECTTS-CCCSCCHHHHTTCTTCCEEECTTCCCS
T ss_pred             cCCccCccChhhhhcCCcccEEECCCCCcCccCh-hhccccccCCEEECCCC-ccCccCHHHhccCCCCcEEECCCCccc
Confidence            3455566655566677777777777777774333 56777777777777777 666655555777777777777777776


Q ss_pred             c-cCchhhccCcccceeecccCccCCCCc-cccCCCCCCCeEeccCCcC
Q 046655          147 G-IIPLEMGRLRNLVHLDLSDNYLSGYIP-PTLGRLSKLEILNLSSNDL  193 (194)
Q Consensus       147 ~-~~p~~~~~l~~L~~L~L~~N~l~g~~p-~~~~~l~~L~~L~ls~N~l  193 (194)
                      + ..|..++.+++|++|++++|++.+.+| ..+.++++|++|++++|.+
T Consensus       112 ~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l  160 (549)
T 2z81_A          112 TLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSL  160 (549)
T ss_dssp             SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTC
T ss_pred             ccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcc
Confidence            4 345566677777777777776433444 4566667777777766654

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.51  E-value=4.5e-14  Score=120.25  Aligned_cols=105  Identities=24%  Similarity=0.259  Sum_probs=59.6

Q ss_pred             eeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchhhccCcccceee
Q 046655           84 GVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLD  163 (194)
Q Consensus        84 ~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~  163 (194)
                      .++.+++++|++. .++...+..+++|++|++++| .+++..|..|..+++|++|++++|+++ .+|..  .+++|++|+
T Consensus        53 ~L~~L~Ls~N~i~-~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~  127 (562)
T 3a79_B           53 RTKALSLSQNSIS-ELRMPDISFLSELRVLRLSHN-RIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLD  127 (562)
T ss_dssp             TCCEEECCSSCCC-CCCGGGTTTCTTCCEEECCSC-CCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEE
T ss_pred             CcCEEECCCCCcc-ccChhhhccCCCccEEECCCC-CCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEE
Confidence            3444555666665 333245566666666666666 555555555666666666666666665 44444  556666666


Q ss_pred             cccCccCC-CCccccCCCCCCCeEeccCCcC
Q 046655          164 LSDNYLSG-YIPPTLGRLSKLEILNLSSNDL  193 (194)
Q Consensus       164 L~~N~l~g-~~p~~~~~l~~L~~L~ls~N~l  193 (194)
                      +++|++++ .+|..|+++++|++|++++|++
T Consensus       128 Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l  158 (562)
T 3a79_B          128 LSFNDFDVLPVCKEFGNLTKLTFLGLSAAKF  158 (562)
T ss_dssp             CCSSCCSBCCCCGGGGGCTTCCEEEEECSBC
T ss_pred             CCCCCccccCchHhhcccCcccEEecCCCcc
Confidence            66666654 2345566666666666666554

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.51  E-value=6.8e-14  Score=116.18  Aligned_cols=123  Identities=20%  Similarity=0.283  Sum_probs=79.3

Q ss_pred             CCcccccceeCCCCCeeeeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCccc
Q 046655           67 YHCKWTGVSCNSAGSVIGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLT  146 (194)
Q Consensus        67 ~~c~~~gv~c~~~~~~~~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~  146 (194)
                      ..+...++..+.+.++..|+.+++++|++. .++...|..+++|++|++++| .+++..+..|..+++|++|+|++|++.
T Consensus        83 ~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~  160 (452)
T 3zyi_A           83 MENNIQMIQADTFRHLHHLEVLQLGRNSIR-QIEVGAFNGLASLNTLELFDN-WLTVIPSGAFEYLSKLRELWLRNNPIE  160 (452)
T ss_dssp             CSSCCCEECTTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSS-CCSBCCTTTSSSCTTCCEEECCSCCCC
T ss_pred             cCCcCceECHHHcCCCCCCCEEECCCCccC-CcChhhccCcccCCEEECCCC-cCCccChhhhcccCCCCEEECCCCCcc
Confidence            345566666666777888888888888888 444367888888888888888 777655566788888888888888887


Q ss_pred             ccCchhhccCcccceeecccC-ccCCCCcc-ccCCCCCCCeEeccCCc
Q 046655          147 GIIPLEMGRLRNLVHLDLSDN-YLSGYIPP-TLGRLSKLEILNLSSND  192 (194)
Q Consensus       147 ~~~p~~~~~l~~L~~L~L~~N-~l~g~~p~-~~~~l~~L~~L~ls~N~  192 (194)
                      ...+..|..+++|+.|++++| .+. .++. .|..+++|++|++++|+
T Consensus       161 ~~~~~~~~~l~~L~~L~l~~~~~l~-~i~~~~~~~l~~L~~L~L~~n~  207 (452)
T 3zyi_A          161 SIPSYAFNRVPSLMRLDLGELKKLE-YISEGAFEGLFNLKYLNLGMCN  207 (452)
T ss_dssp             EECTTTTTTCTTCCEEECCCCTTCC-EECTTTTTTCTTCCEEECTTSC
T ss_pred             eeCHhHHhcCCcccEEeCCCCCCcc-ccChhhccCCCCCCEEECCCCc
Confidence            544444555555555555542 222 2222 24444444444444443

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.51  E-value=1.6e-14  Score=116.17  Aligned_cols=121  Identities=19%  Similarity=0.188  Sum_probs=54.5

Q ss_pred             cccccceeCCCCCeeeeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCccccc
Q 046655           69 CKWTGVSCNSAGSVIGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGI  148 (194)
Q Consensus        69 c~~~gv~c~~~~~~~~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~  148 (194)
                      +...++.......+++|+.+++++|++++..+ ..+..+++|++|++++| .+++..+..+..+++|++|++++|++. .
T Consensus        62 n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~-~  138 (353)
T 2z80_A           62 NRITYISNSDLQRCVNLQALVLTSNGINTIEE-DSFSSLGSLEHLDLSYN-YLSNLSSSWFKPLSSLTFLNLLGNPYK-T  138 (353)
T ss_dssp             SCCCEECTTTTTTCTTCCEEECTTSCCCEECT-TTTTTCTTCCEEECCSS-CCSSCCHHHHTTCTTCSEEECTTCCCS-S
T ss_pred             CcCcccCHHHhccCCCCCEEECCCCccCccCH-hhcCCCCCCCEEECCCC-cCCcCCHhHhCCCccCCEEECCCCCCc-c
Confidence            33444433344455555555555555552222 34555555555555555 444322222445555555555555554 2


Q ss_pred             Cch--hhccCcccceeecccC-ccCCCCccccCCCCCCCeEeccCCc
Q 046655          149 IPL--EMGRLRNLVHLDLSDN-YLSGYIPPTLGRLSKLEILNLSSND  192 (194)
Q Consensus       149 ~p~--~~~~l~~L~~L~L~~N-~l~g~~p~~~~~l~~L~~L~ls~N~  192 (194)
                      +|.  .+..+++|++|++++| .+++..|..+.++++|++|++++|.
T Consensus       139 l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~  185 (353)
T 2z80_A          139 LGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASD  185 (353)
T ss_dssp             SCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT
T ss_pred             cCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCC
Confidence            332  3444444444444444 2332223334444444444444443

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.50  E-value=2.6e-14  Score=120.35  Aligned_cols=106  Identities=27%  Similarity=0.272  Sum_probs=66.5

Q ss_pred             eeeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchhhccCccccee
Q 046655           83 IGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHL  162 (194)
Q Consensus        83 ~~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L  162 (194)
                      ..++.+++++|++. .++...+..+++|++|++++| .+++..|..|..+++|++|++++|+++ .+|..  .+++|++|
T Consensus        21 ~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L   95 (520)
T 2z7x_B           21 QKTTILNISQNYIS-ELWTSDILSLSKLRILIISHN-RIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHL   95 (520)
T ss_dssp             TTCSEEECCSSCCC-CCCHHHHTTCTTCCEEECCSS-CCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEE
T ss_pred             ccccEEECCCCccc-ccChhhccccccccEEecCCC-ccCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEE
Confidence            44555566666666 333245666666666666666 666555666666666666666666666 45544  56666666


Q ss_pred             ecccCccCC-CCccccCCCCCCCeEeccCCcC
Q 046655          163 DLSDNYLSG-YIPPTLGRLSKLEILNLSSNDL  193 (194)
Q Consensus       163 ~L~~N~l~g-~~p~~~~~l~~L~~L~ls~N~l  193 (194)
                      ++++|++++ .+|..++++++|++|++++|.+
T Consensus        96 ~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l  127 (520)
T 2z7x_B           96 DLSFNAFDALPICKEFGNMSQLKFLGLSTTHL  127 (520)
T ss_dssp             ECCSSCCSSCCCCGGGGGCTTCCEEEEEESSC
T ss_pred             eccCCccccccchhhhccCCcceEEEecCccc
Confidence            666666665 3556666666666666666654

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.50  E-value=9.1e-14  Score=120.59  Aligned_cols=122  Identities=27%  Similarity=0.266  Sum_probs=64.6

Q ss_pred             cccccceeCCCCCeeeeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCccc--
Q 046655           69 CKWTGVSCNSAGSVIGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLT--  146 (194)
Q Consensus        69 c~~~gv~c~~~~~~~~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~--  146 (194)
                      |...++....+..+.+|+.+++++|++.+.+|...+..+++|++|++++| .+.+..+..|..+++|+.|++++|.+.  
T Consensus       391 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~~~~L~~L~l~~n~l~~~  469 (680)
T 1ziw_A          391 NKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYN-KYLQLTRNSFALVPSLQRLMLRRVALKNV  469 (680)
T ss_dssp             SCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSC-SEEECCTTTTTTCTTCCEEECTTSCCBCT
T ss_pred             CCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCC-CcceeChhhhhcCcccccchhcccccccc
Confidence            34445545556667777778888888876666556777777777777777 555443444444444444444444332  


Q ss_pred             ccCchhhccCcccceeecccCccCCCCccccCCCCCCCeEeccCC
Q 046655          147 GIIPLEMGRLRNLVHLDLSDNYLSGYIPPTLGRLSKLEILNLSSN  191 (194)
Q Consensus       147 ~~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N  191 (194)
                      +.+|..+..+++|+.|++++|++++..|..|..+++|++|++++|
T Consensus       470 ~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N  514 (680)
T 1ziw_A          470 DSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHN  514 (680)
T ss_dssp             TCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             ccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCC
Confidence            233344444444444444444444333333444444444444444

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.49  E-value=6.7e-14  Score=111.19  Aligned_cols=119  Identities=20%  Similarity=0.181  Sum_probs=88.0

Q ss_pred             ccccceeCCCCCeeeeeeeeccCCccccccCcccc-CCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCccccc
Q 046655           70 KWTGVSCNSAGSVIGVSLLWYENDNITGELGRFKF-SCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGI  148 (194)
Q Consensus        70 ~~~gv~c~~~~~~~~l~~l~l~~n~l~~~lp~~~~-~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~  148 (194)
                      .+.++.....+.++.|+.+++++|++.+..+ ..+ ..+++|++|++++| .+++. + ....+++|++|++++|++++ 
T Consensus       131 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~~l~~L~~L~L~~N-~l~~~-~-~~~~l~~L~~L~Ls~N~l~~-  205 (317)
T 3o53_A          131 KITMLRDLDEGCRSRVQYLDLKLNEIDTVNF-AELAASSDTLEHLNLQYN-FIYDV-K-GQVVFAKLKTLDLSSNKLAF-  205 (317)
T ss_dssp             CCCSGGGBCTGGGSSEEEEECTTSCCCEEEG-GGGGGGTTTCCEEECTTS-CCCEE-E-CCCCCTTCCEEECCSSCCCE-
T ss_pred             CCCCccchhhhccCCCCEEECCCCCCCcccH-HHHhhccCcCCEEECCCC-cCccc-c-cccccccCCEEECCCCcCCc-
Confidence            3344434445556677778888888774444 444 36778888888888 66643 3 23458889999999999884 


Q ss_pred             CchhhccCcccceeecccCccCCCCccccCCCCCCCeEeccCCcCC
Q 046655          149 IPLEMGRLRNLVHLDLSDNYLSGYIPPTLGRLSKLEILNLSSNDLY  194 (194)
Q Consensus       149 ~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~ls  194 (194)
                      +|..+..+++|+.|++++|+++ .+|..+..+++|+.|++++|+++
T Consensus       206 l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~  250 (317)
T 3o53_A          206 MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH  250 (317)
T ss_dssp             ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCB
T ss_pred             chhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCcc
Confidence            5566888899999999999999 57888888999999999999863

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.49  E-value=1.6e-14  Score=114.48  Aligned_cols=110  Identities=25%  Similarity=0.230  Sum_probs=80.0

Q ss_pred             eeeeeeeccCCccccccCccccCCCCCccEEEecCCCCCccc--CCccc--cCCCCCCEeecCCCcccc--cCc-hhhcc
Q 046655           83 IGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGS--IPSEI--AAVSMLQTLELPSSSLTG--IIP-LEMGR  155 (194)
Q Consensus        83 ~~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~--~p~~~--~~l~~L~~L~L~~n~l~~--~~p-~~~~~  155 (194)
                      ++|+.+++++|++.+..+ ..+..+++|++|++++| .+.+.  ++..+  ..+++|++|++++|++++  .++ ..+..
T Consensus       149 ~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~  226 (312)
T 1wwl_A          149 PGLKVLSIAQAHSLNFSC-EQVRVFPALSTLDLSDN-PELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAA  226 (312)
T ss_dssp             TTCCEEEEESCSCCCCCT-TTCCCCSSCCEEECCSC-TTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHT
T ss_pred             CCCcEEEeeCCCCccchH-HHhccCCCCCEEECCCC-CcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhc
Confidence            667778888888884444 67888888888888888 66554  23333  678888888888888873  222 23456


Q ss_pred             CcccceeecccCccCCCCc-cccCCCCCCCeEeccCCcCC
Q 046655          156 LRNLVHLDLSDNYLSGYIP-PTLGRLSKLEILNLSSNDLY  194 (194)
Q Consensus       156 l~~L~~L~L~~N~l~g~~p-~~~~~l~~L~~L~ls~N~ls  194 (194)
                      +++|+.|++++|++++..| ..+..+++|++|++++|+|+
T Consensus       227 l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~  266 (312)
T 1wwl_A          227 RVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK  266 (312)
T ss_dssp             TCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS
T ss_pred             CCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC
Confidence            7888888888888887664 44566788888888888764

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.49  E-value=6.1e-14  Score=117.82  Aligned_cols=111  Identities=20%  Similarity=0.193  Sum_probs=72.7

Q ss_pred             CCCCeeeeeeeeccCCccccccCccccC-CCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchhhccC
Q 046655           78 SAGSVIGVSLLWYENDNITGELGRFKFS-CFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRL  156 (194)
Q Consensus        78 ~~~~~~~l~~l~l~~n~l~~~lp~~~~~-~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l  156 (194)
                      ..+.++.|+.+++++|.+++..| ..+. .++.|++|++++| .+++. + .+..+++|++|+|++|.+++ +|+.+..+
T Consensus       139 ~~~~l~~L~~L~Ls~N~l~~~~~-~~l~~~l~~L~~L~Ls~N-~l~~~-~-~~~~l~~L~~L~Ls~N~l~~-~~~~~~~l  213 (487)
T 3oja_A          139 DEGCRSRVQYLDLKLNEIDTVNF-AELAASSDTLEHLNLQYN-FIYDV-K-GQVVFAKLKTLDLSSNKLAF-MGPEFQSA  213 (487)
T ss_dssp             CGGGGSSEEEEECTTSCCCEEEG-GGGGGGTTTCCEEECTTS-CCCEE-E-CCCCCTTCCEEECCSSCCCE-ECGGGGGG
T ss_pred             hhcCCCCCCEEECCCCCCCCcCh-HHHhhhCCcccEEecCCC-ccccc-c-ccccCCCCCEEECCCCCCCC-CCHhHcCC
Confidence            33445555556666666665444 3443 5666666666666 55543 2 23346777777777777774 44457777


Q ss_pred             cccceeecccCccCCCCccccCCCCCCCeEeccCCcCC
Q 046655          157 RNLVHLDLSDNYLSGYIPPTLGRLSKLEILNLSSNDLY  194 (194)
Q Consensus       157 ~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~ls  194 (194)
                      ++|+.|++++|.+++ +|..+..+++|+.|++++|+++
T Consensus       214 ~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~  250 (487)
T 3oja_A          214 AGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFH  250 (487)
T ss_dssp             TTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBC
T ss_pred             CCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCc
Confidence            888888888888884 6777777788888888887753

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.48  E-value=2.7e-14  Score=104.18  Aligned_cols=106  Identities=17%  Similarity=0.129  Sum_probs=89.5

Q ss_pred             eeeeeeeeccCCccccccCccccCCC-CCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchhhccCcccc
Q 046655           82 VIGVSLLWYENDNITGELGRFKFSCF-PNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLV  160 (194)
Q Consensus        82 ~~~l~~l~l~~n~l~~~lp~~~~~~l-~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~  160 (194)
                      ...++.+++++|++. .++ . +..+ ++|++|++++| .+++.  ..+..+++|++|++++|++++..|..+..+++|+
T Consensus        18 ~~~L~~L~l~~n~l~-~i~-~-~~~~~~~L~~L~Ls~N-~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~   91 (176)
T 1a9n_A           18 AVRDRELDLRGYKIP-VIE-N-LGATLDQFDAIDFSDN-EIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT   91 (176)
T ss_dssp             TTSCEEEECTTSCCC-SCC-C-GGGGTTCCSEEECCSS-CCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred             cCCceEEEeeCCCCc-hhH-H-hhhcCCCCCEEECCCC-CCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCC
Confidence            445677888999999 776 3 4444 49999999999 88864  6789999999999999999965445568999999


Q ss_pred             eeecccCccCCCCcc--ccCCCCCCCeEeccCCcCC
Q 046655          161 HLDLSDNYLSGYIPP--TLGRLSKLEILNLSSNDLY  194 (194)
Q Consensus       161 ~L~L~~N~l~g~~p~--~~~~l~~L~~L~ls~N~ls  194 (194)
                      +|++++|+++ .+|.  .+..+++|++|++++|+++
T Consensus        92 ~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~  126 (176)
T 1a9n_A           92 ELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT  126 (176)
T ss_dssp             EEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG
T ss_pred             EEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC
Confidence            9999999997 6776  7899999999999999863

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.48  E-value=6.8e-14  Score=117.79  Aligned_cols=107  Identities=22%  Similarity=0.316  Sum_probs=62.7

Q ss_pred             eeeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchhhccCccccee
Q 046655           83 IGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHL  162 (194)
Q Consensus        83 ~~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L  162 (194)
                      ++|+.+++++|++.+.+|...+..++.|++|++++| .+++.+|..+.  ++|++|++++|+++ .+|..+..+++|++|
T Consensus       374 ~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L  449 (520)
T 2z7x_B          374 KSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSN-ILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQEL  449 (520)
T ss_dssp             TTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSS-CCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEE
T ss_pred             CCCCEEECCCCcCCcccccchhccCccCCEEECcCC-CCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEE
Confidence            333334444444443344222444444455555444 44443333332  46666666666666 667666677777788


Q ss_pred             ecccCccCCCCccc-cCCCCCCCeEeccCCcCC
Q 046655          163 DLSDNYLSGYIPPT-LGRLSKLEILNLSSNDLY  194 (194)
Q Consensus       163 ~L~~N~l~g~~p~~-~~~l~~L~~L~ls~N~ls  194 (194)
                      ++++|+++ .+|.. +..+++|++|++++|+++
T Consensus       450 ~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~  481 (520)
T 2z7x_B          450 NVASNQLK-SVPDGIFDRLTSLQKIWLHTNPWD  481 (520)
T ss_dssp             ECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             ECCCCcCC-ccCHHHhccCCcccEEECcCCCCc
Confidence            88777777 45655 777777888888877763

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.47  E-value=9.3e-14  Score=110.85  Aligned_cols=84  Identities=24%  Similarity=0.307  Sum_probs=48.2

Q ss_pred             CCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchhhccCcccceeecccCccCCCCccccCCCCCCCeEe
Q 046655          108 PNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLSDNYLSGYIPPTLGRLSKLEILN  187 (194)
Q Consensus       108 ~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~  187 (194)
                      ++|++|++++| .+++..+..+..+++|++|++++|++.+..|..+..+++|+.|++++|+++ .+|..+..+++|++|+
T Consensus       193 ~~L~~L~l~~n-~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~  270 (332)
T 2ft3_A          193 ETLNELHLDHN-KIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVY  270 (332)
T ss_dssp             SSCSCCBCCSS-CCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEE
T ss_pred             CCCCEEECCCC-cCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEE
Confidence            34555555555 555444455555566666666666665444445555566666666666665 4555555566666666


Q ss_pred             ccCCcC
Q 046655          188 LSSNDL  193 (194)
Q Consensus       188 ls~N~l  193 (194)
                      +++|+|
T Consensus       271 l~~N~l  276 (332)
T 2ft3_A          271 LHTNNI  276 (332)
T ss_dssp             CCSSCC
T ss_pred             CCCCCC
Confidence            666554

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.47  E-value=1.5e-13  Score=116.93  Aligned_cols=107  Identities=20%  Similarity=0.315  Sum_probs=59.7

Q ss_pred             eeeeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchhhccCcccce
Q 046655           82 VIGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVH  161 (194)
Q Consensus        82 ~~~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~  161 (194)
                      ++.|+.+++++|++.+.+|...+..+++|++|++++| .+++.+|..+.  ++|++|++++|+++ .+|..+..+++|+.
T Consensus       402 l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~  477 (562)
T 3a79_B          402 MSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSN-MLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQE  477 (562)
T ss_dssp             CTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSS-CCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSE
T ss_pred             CCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCC-CCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCE
Confidence            3334444444444443344223344444444444444 44433333222  45666666666666 56666667777777


Q ss_pred             eecccCccCCCCccc-cCCCCCCCeEeccCCcC
Q 046655          162 LDLSDNYLSGYIPPT-LGRLSKLEILNLSSNDL  193 (194)
Q Consensus       162 L~L~~N~l~g~~p~~-~~~l~~L~~L~ls~N~l  193 (194)
                      |++++|+++ .+|.. +..+++|+.|++++|++
T Consensus       478 L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~  509 (562)
T 3a79_B          478 LNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPW  509 (562)
T ss_dssp             EECCSSCCC-CCCTTSTTTCTTCCCEECCSCCB
T ss_pred             EECCCCCCC-CCCHHHHhcCCCCCEEEecCCCc
Confidence            777777777 45555 67777777777777765

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.46  E-value=8.7e-14  Score=116.89  Aligned_cols=119  Identities=21%  Similarity=0.259  Sum_probs=95.5

Q ss_pred             CcccccceeCCCCCeeeeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCcccc-CCCCCCEeecCCCccc
Q 046655           68 HCKWTGVSCNSAGSVIGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIA-AVSMLQTLELPSSSLT  146 (194)
Q Consensus        68 ~c~~~gv~c~~~~~~~~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~-~l~~L~~L~L~~n~l~  146 (194)
                      .|.+.++.+..   +..|..+++++|.+++..| ..+..+++|++|++++| .+++..|..+. .+++|+.|+|++|.++
T Consensus       108 ~N~l~~~~~~~---l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~Ls~N-~l~~~~~~~l~~~l~~L~~L~Ls~N~l~  182 (487)
T 3oja_A          108 NNNISRVSCSR---GQGKKNIYLANNKITMLRD-LDEGCRSRVQYLDLKLN-EIDTVNFAELAASSDTLEHLNLQYNFIY  182 (487)
T ss_dssp             SSCCCCEEECC---CSSCEEEECCSSCCCSGGG-BCGGGGSSEEEEECTTS-CCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred             CCcCCCCCccc---cCCCCEEECCCCCCCCCCc-hhhcCCCCCCEEECCCC-CCCCcChHHHhhhCCcccEEecCCCccc
Confidence            34555555543   3556778889999996556 67888999999999999 88887787776 7899999999999998


Q ss_pred             ccCchhhccCcccceeecccCccCCCCccccCCCCCCCeEeccCCcCC
Q 046655          147 GIIPLEMGRLRNLVHLDLSDNYLSGYIPPTLGRLSKLEILNLSSNDLY  194 (194)
Q Consensus       147 ~~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~ls  194 (194)
                      +. |. +..+++|+.|++++|++++ +|+.+..+++|+.|++++|.|+
T Consensus       183 ~~-~~-~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~  227 (487)
T 3oja_A          183 DV-KG-QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV  227 (487)
T ss_dssp             EE-EC-CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC
T ss_pred             cc-cc-cccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCc
Confidence            65 33 4468999999999999996 5556889999999999999874

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.45  E-value=3.6e-13  Score=97.81  Aligned_cols=106  Identities=21%  Similarity=0.260  Sum_probs=86.5

Q ss_pred             CCCCcccccceeCCC-------CCeeeeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCE
Q 046655           65 TSYHCKWTGVSCNSA-------GSVIGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQT  137 (194)
Q Consensus        65 ~~~~c~~~gv~c~~~-------~~~~~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~  137 (194)
                      ....|.|+.+.|...       +-...++.+++++|++++..| ..|..+++|++|++++| .+++..+..|..+++|++
T Consensus         5 ~~C~C~~~~l~~s~n~l~~ip~~~~~~l~~L~L~~N~i~~~~~-~~~~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~   82 (170)
T 3g39_A            5 SQCSCSGTTVDCSGKSLASVPTGIPTTTQVLYLYDNQITKLEP-GVFDRLTQLTRLDLDNN-QLTVLPAGVFDKLTQLTQ   82 (170)
T ss_dssp             -CCEEETTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCT-TTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCE
T ss_pred             CcCCcCCCEEEeCCCCcCccCccCCCCCcEEEcCCCcCCccCh-hhhcCcccCCEEECCCC-CcCccChhhccCCCCCCE
Confidence            345577888888631       122456779999999994445 78999999999999999 899766667899999999


Q ss_pred             eecCCCcccccCchhhccCcccceeecccCccCCC
Q 046655          138 LELPSSSLTGIIPLEMGRLRNLVHLDLSDNYLSGY  172 (194)
Q Consensus       138 L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~g~  172 (194)
                      |+|++|++++..+..|..+++|+.|++++|.++..
T Consensus        83 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~  117 (170)
T 3g39_A           83 LSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCA  117 (170)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred             EECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence            99999999966566799999999999999999854

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.45  E-value=5e-13  Score=105.10  Aligned_cols=105  Identities=29%  Similarity=0.455  Sum_probs=65.9

Q ss_pred             CCCeeeeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchhhccCcc
Q 046655           79 AGSVIGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRN  158 (194)
Q Consensus        79 ~~~~~~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~  158 (194)
                      ...+++|+.+++++|++. .++  .+..+++|++|++++| .+++ + +.+..+++|+.|++++|++++.  ..+..+++
T Consensus        86 l~~l~~L~~L~l~~n~l~-~~~--~l~~l~~L~~L~L~~n-~i~~-~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~  157 (291)
T 1h6t_A           86 LANLKNLGWLFLDENKVK-DLS--SLKDLKKLKSLSLEHN-GISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTK  157 (291)
T ss_dssp             GTTCTTCCEEECCSSCCC-CGG--GGTTCTTCCEEECTTS-CCCC-C-GGGGGCTTCCEEECCSSCCCCC--GGGGGCTT
T ss_pred             cccCCCCCEEECCCCcCC-CCh--hhccCCCCCEEECCCC-cCCC-C-hhhcCCCCCCEEEccCCcCCcc--hhhccCCC
Confidence            345555666666666666 444  3666667777777776 5553 2 3466666677777777766643  45666677


Q ss_pred             cceeecccCccCCCCccccCCCCCCCeEeccCCcC
Q 046655          159 LVHLDLSDNYLSGYIPPTLGRLSKLEILNLSSNDL  193 (194)
Q Consensus       159 L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l  193 (194)
                      |+.|++++|++++. +. +..+++|++|++++|.+
T Consensus       158 L~~L~L~~N~l~~~-~~-l~~l~~L~~L~L~~N~i  190 (291)
T 1h6t_A          158 LDTLSLEDNQISDI-VP-LAGLTKLQNLYLSKNHI  190 (291)
T ss_dssp             CSEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCC
T ss_pred             CCEEEccCCccccc-hh-hcCCCccCEEECCCCcC
Confidence            77777777777643 33 66667777777776665

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.44  E-value=4.9e-14  Score=111.56  Aligned_cols=110  Identities=24%  Similarity=0.198  Sum_probs=62.9

Q ss_pred             CeeeeeeeeccCCccccccCccccCCCCCccEEEecCCCCCccc--C--CccccCCCCCCEeecCCCcccccCch----h
Q 046655           81 SVIGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGS--I--PSEIAAVSMLQTLELPSSSLTGIIPL----E  152 (194)
Q Consensus        81 ~~~~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~--~--p~~~~~l~~L~~L~L~~n~l~~~~p~----~  152 (194)
                      ...+|+.+++++|++.+..+ ..+..+++|++|++++| .+.+.  +  +..+..+++|++|++++|+++ .+|.    .
T Consensus       143 ~~~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l  219 (310)
T 4glp_A          143 LKPGLKVLSIAQAHSPAFSC-EQVRAFPALTSLDLSDN-PGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAAL  219 (310)
T ss_dssp             BCSCCCEEEEECCSSCCCCT-TSCCCCTTCCEEECCSC-TTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHH
T ss_pred             hccCCCEEEeeCCCcchhhH-HHhccCCCCCEEECCCC-CCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHH
Confidence            35566666667777763333 56666777777777777 54431  1  222345666666666666665 2222    1


Q ss_pred             hccCcccceeecccCccCCCCccccCCC---CCCCeEeccCCcC
Q 046655          153 MGRLRNLVHLDLSDNYLSGYIPPTLGRL---SKLEILNLSSNDL  193 (194)
Q Consensus       153 ~~~l~~L~~L~L~~N~l~g~~p~~~~~l---~~L~~L~ls~N~l  193 (194)
                      +..+++|++|++++|++++..|..+..+   ++|++|++++|+|
T Consensus       220 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l  263 (310)
T 4glp_A          220 AAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGL  263 (310)
T ss_dssp             HHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCC
T ss_pred             HhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCC
Confidence            3455666666666666665555555544   4666666666654

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.44  E-value=2.6e-13  Score=108.55  Aligned_cols=107  Identities=25%  Similarity=0.323  Sum_probs=75.7

Q ss_pred             CCeeeeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchhhccCccc
Q 046655           80 GSVIGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNL  159 (194)
Q Consensus        80 ~~~~~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L  159 (194)
                      ....+|+.+++++|++. .++  .+..+++|++|++++| .+++ + +.+..+++|+.|++++|.+.+..|..+..+++|
T Consensus       240 ~~l~~L~~L~l~~n~l~-~~~--~~~~l~~L~~L~l~~n-~l~~-~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L  313 (347)
T 4fmz_A          240 ANLSQLTWLEIGTNQIS-DIN--AVKDLTKLKMLNVGSN-QISD-I-SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNL  313 (347)
T ss_dssp             TTCTTCCEEECCSSCCC-CCG--GGTTCTTCCEEECCSS-CCCC-C-GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTC
T ss_pred             hcCCCCCEEECCCCccC-CCh--hHhcCCCcCEEEccCC-ccCC-C-hhhcCCCCCCEEECcCCcCCCcChhHhhccccC
Confidence            45555666677777766 443  4667777777777777 6664 3 346777888888888888877777778888888


Q ss_pred             ceeecccCccCCCCccccCCCCCCCeEeccCCcCC
Q 046655          160 VHLDLSDNYLSGYIPPTLGRLSKLEILNLSSNDLY  194 (194)
Q Consensus       160 ~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~ls  194 (194)
                      +.|++++|++++..|  +..+++|++|++++|+|+
T Consensus       314 ~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          314 TTLFLSQNHITDIRP--LASLSKMDSADFANQVIK  346 (347)
T ss_dssp             SEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred             CEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence            888888888885444  677888888888888764

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.43  E-value=2.8e-13  Score=107.21  Aligned_cols=118  Identities=25%  Similarity=0.283  Sum_probs=65.2

Q ss_pred             cccceeCCCCCeeeeeeeeccCCccccc--cCc-cccCCCCCccEEEecCCCCCcccCCc----cccCCCCCCEeecCCC
Q 046655           71 WTGVSCNSAGSVIGVSLLWYENDNITGE--LGR-FKFSCFPNLKSFKIHSNYLLSGSIPS----EIAAVSMLQTLELPSS  143 (194)
Q Consensus        71 ~~gv~c~~~~~~~~l~~l~l~~n~l~~~--lp~-~~~~~l~~L~~L~l~~n~~l~~~~p~----~~~~l~~L~~L~L~~n  143 (194)
                      ..++.+...+.+..|+.+++++|++.+.  ++. ..+..+++|++|++++| .++. ++.    .+..+++|++|++++|
T Consensus       157 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~-l~~~~~~l~~~l~~L~~L~Ls~N  234 (310)
T 4glp_A          157 SPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNT-GMET-PTGVCAALAAAGVQPHSLDLSHN  234 (310)
T ss_dssp             SCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSS-CCCC-HHHHHHHHHHHTCCCSSEECTTS
T ss_pred             cchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCC-CCCc-hHHHHHHHHhcCCCCCEEECCCC
Confidence            3344444455556666666666665432  210 12245666666666666 5541 222    1345566666666666


Q ss_pred             cccccCchhhccC---cccceeecccCccCCCCccccCCCCCCCeEeccCCcC
Q 046655          144 SLTGIIPLEMGRL---RNLVHLDLSDNYLSGYIPPTLGRLSKLEILNLSSNDL  193 (194)
Q Consensus       144 ~l~~~~p~~~~~l---~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l  193 (194)
                      ++.+..|..+..+   ++|++|++++|+++ .+|..+.  ++|++|++++|++
T Consensus       235 ~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l  284 (310)
T 4glp_A          235 SLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRL  284 (310)
T ss_dssp             CCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCC
T ss_pred             CCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcC
Confidence            6665555555544   46666666666666 4555543  5666666666655

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.42  E-value=9.8e-13  Score=104.15  Aligned_cols=105  Identities=23%  Similarity=0.381  Sum_probs=56.1

Q ss_pred             CCCeeeeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchhhccCcc
Q 046655           79 AGSVIGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRN  158 (194)
Q Consensus        79 ~~~~~~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~  158 (194)
                      ...+++|+.+++++|++. .++  .+..+++|++|++++| .+++ ++. +..+++|++|++++|++++. +. +..+++
T Consensus        81 ~~~l~~L~~L~L~~n~l~-~~~--~~~~l~~L~~L~l~~n-~l~~-~~~-l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~  152 (308)
T 1h6u_A           81 LKNLTKITELELSGNPLK-NVS--AIAGLQSIKTLDLTST-QITD-VTP-LAGLSNLQVLYLDLNQITNI-SP-LAGLTN  152 (308)
T ss_dssp             GTTCCSCCEEECCSCCCS-CCG--GGTTCTTCCEEECTTS-CCCC-CGG-GTTCTTCCEEECCSSCCCCC-GG-GGGCTT
T ss_pred             HccCCCCCEEEccCCcCC-Cch--hhcCCCCCCEEECCCC-CCCC-chh-hcCCCCCCEEECCCCccCcC-cc-ccCCCC
Confidence            344555555666666655 343  3555666666666666 5543 222 55555566666666655532 22 555555


Q ss_pred             cceeecccCccCCCCccccCCCCCCCeEeccCCcC
Q 046655          159 LVHLDLSDNYLSGYIPPTLGRLSKLEILNLSSNDL  193 (194)
Q Consensus       159 L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l  193 (194)
                      |+.|++++|++++ ++. +..+++|+.|++++|.+
T Consensus       153 L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l  185 (308)
T 1h6u_A          153 LQYLSIGNAQVSD-LTP-LANLSKLTTLKADDNKI  185 (308)
T ss_dssp             CCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCC
T ss_pred             ccEEEccCCcCCC-Chh-hcCCCCCCEEECCCCcc
Confidence            5555555555553 333 55555555555555544

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.41  E-value=4.1e-13  Score=114.78  Aligned_cols=115  Identities=18%  Similarity=0.133  Sum_probs=97.7

Q ss_pred             CCcccccceeCCCCCeeeeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCccc
Q 046655           67 YHCKWTGVSCNSAGSVIGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLT  146 (194)
Q Consensus        67 ~~c~~~gv~c~~~~~~~~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~  146 (194)
                      ..|...++.  ..+.++.|+.|++++|+++ .+| ..+..+++|++|++++| .+++ +| .++.+++|+.|+|++|+++
T Consensus       449 s~n~l~~lp--~~~~l~~L~~L~Ls~N~l~-~lp-~~~~~l~~L~~L~Ls~N-~l~~-lp-~l~~l~~L~~L~Ls~N~l~  521 (567)
T 1dce_A          449 AHKDLTVLC--HLEQLLLVTHLDLSHNRLR-ALP-PALAALRCLEVLQASDN-ALEN-VD-GVANLPRLQELLLCNNRLQ  521 (567)
T ss_dssp             TTSCCSSCC--CGGGGTTCCEEECCSSCCC-CCC-GGGGGCTTCCEEECCSS-CCCC-CG-GGTTCSSCCEEECCSSCCC
T ss_pred             cCCCCCCCc--CccccccCcEeecCccccc-ccc-hhhhcCCCCCEEECCCC-CCCC-Cc-ccCCCCCCcEEECCCCCCC
Confidence            445555653  2677888999999999999 999 78999999999999999 8886 67 8999999999999999999


Q ss_pred             ccC-chhhccCcccceeecccCccCCCCccc---cCCCCCCCeEec
Q 046655          147 GII-PLEMGRLRNLVHLDLSDNYLSGYIPPT---LGRLSKLEILNL  188 (194)
Q Consensus       147 ~~~-p~~~~~l~~L~~L~L~~N~l~g~~p~~---~~~l~~L~~L~l  188 (194)
                      +.. |..++.+++|+.|++++|++++..|..   +..+++|+.|++
T Consensus       522 ~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          522 QSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             SSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             CCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence            776 999999999999999999999654422   334899999875

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.39  E-value=1.5e-12  Score=100.89  Aligned_cols=103  Identities=21%  Similarity=0.344  Sum_probs=49.4

Q ss_pred             CeeeeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCc--------------------cccCCCCCCEeec
Q 046655           81 SVIGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPS--------------------EIAAVSMLQTLEL  140 (194)
Q Consensus        81 ~~~~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~--------------------~~~~l~~L~~L~L  140 (194)
                      .++.|+.+++++|+++ .++ . +..+++|++|++++| .+++ +|.                    .+..+++|+.|++
T Consensus        61 ~l~~L~~L~L~~N~i~-~~~-~-l~~l~~L~~L~L~~N-~l~~-l~~~~~~~L~~L~L~~N~l~~~~~l~~l~~L~~L~L  135 (263)
T 1xeu_A           61 FFTNLKELHLSHNQIS-DLS-P-LKDLTKLEELSVNRN-RLKN-LNGIPSACLSRLFLDNNELRDTDSLIHLKNLEILSI  135 (263)
T ss_dssp             GCTTCCEEECCSSCCC-CCG-G-GTTCSSCCEEECCSS-CCSC-CTTCCCSSCCEEECCSSCCSBSGGGTTCTTCCEEEC
T ss_pred             hCCCCCEEECCCCccC-CCh-h-hccCCCCCEEECCCC-ccCC-cCccccCcccEEEccCCccCCChhhcCcccccEEEC
Confidence            3444555555555555 444 2 455555555555555 4443 222                    2444445555555


Q ss_pred             CCCcccccCchhhccCcccceeecccCccCCCCccccCCCCCCCeEeccCCc
Q 046655          141 PSSSLTGIIPLEMGRLRNLVHLDLSDNYLSGYIPPTLGRLSKLEILNLSSND  192 (194)
Q Consensus       141 ~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~  192 (194)
                      ++|++++ +| .+..+++|+.|++++|++++.  ..+..+++|+.|++++|+
T Consensus       136 s~N~i~~-~~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~  183 (263)
T 1xeu_A          136 RNNKLKS-IV-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQK  183 (263)
T ss_dssp             TTSCCCB-CG-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEE
T ss_pred             CCCcCCC-Ch-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCc
Confidence            5555542 22 344445555555555555532  334445555555555544

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.39  E-value=1.2e-12  Score=101.41  Aligned_cols=82  Identities=22%  Similarity=0.334  Sum_probs=68.3

Q ss_pred             eeeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchhhccCccccee
Q 046655           83 IGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHL  162 (194)
Q Consensus        83 ~~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L  162 (194)
                      ..|+.+++++|+++ .++  .+..+++|++|++++| .+++ ++ .+..+++|+.|++++|++++.  ..+..+++|+.|
T Consensus       106 ~~L~~L~L~~N~l~-~~~--~l~~l~~L~~L~Ls~N-~i~~-~~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L  177 (263)
T 1xeu_A          106 ACLSRLFLDNNELR-DTD--SLIHLKNLEILSIRNN-KLKS-IV-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWI  177 (263)
T ss_dssp             SSCCEEECCSSCCS-BSG--GGTTCTTCCEEECTTS-CCCB-CG-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEE
T ss_pred             CcccEEEccCCccC-CCh--hhcCcccccEEECCCC-cCCC-Ch-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEE
Confidence            45555667777776 454  4788999999999999 8885 44 688999999999999999965  678899999999


Q ss_pred             ecccCccCCC
Q 046655          163 DLSDNYLSGY  172 (194)
Q Consensus       163 ~L~~N~l~g~  172 (194)
                      ++++|.+++.
T Consensus       178 ~l~~N~~~~~  187 (263)
T 1xeu_A          178 DLTGQKCVNE  187 (263)
T ss_dssp             EEEEEEEECC
T ss_pred             eCCCCcccCC
Confidence            9999999954

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.39  E-value=5.6e-13  Score=105.81  Aligned_cols=108  Identities=21%  Similarity=0.257  Sum_probs=83.6

Q ss_pred             eeeeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccc-cCCCCCCEeecCCCcccccCchhhccCcccc
Q 046655           82 VIGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEI-AAVSMLQTLELPSSSLTGIIPLEMGRLRNLV  160 (194)
Q Consensus        82 ~~~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~-~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~  160 (194)
                      ...|+.+++++|++++ ++...+..+++|++|++++| .+++..+..+ ..+++|++|++++|.+++. |. ...+++|+
T Consensus       119 ~~~L~~L~l~~N~l~~-~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~  194 (317)
T 3o53_A          119 GQGKKNIYLANNKITM-LRDLDEGCRSRVQYLDLKLN-EIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLK  194 (317)
T ss_dssp             CSSCEEEECCSSCCCS-GGGBCTGGGSSEEEEECTTS-CCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCC
T ss_pred             cCCCCEEECCCCCCCC-ccchhhhccCCCCEEECCCC-CCCcccHHHHhhccCcCCEEECCCCcCccc-cc-ccccccCC
Confidence            3456667788888884 44357778888999999998 7777666665 3688899999999998854 33 33588999


Q ss_pred             eeecccCccCCCCccccCCCCCCCeEeccCCcCC
Q 046655          161 HLDLSDNYLSGYIPPTLGRLSKLEILNLSSNDLY  194 (194)
Q Consensus       161 ~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~ls  194 (194)
                      .|++++|++++ +|..+..+++|++|++++|+++
T Consensus       195 ~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~  227 (317)
T 3o53_A          195 TLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV  227 (317)
T ss_dssp             EEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC
T ss_pred             EEECCCCcCCc-chhhhcccCcccEEECcCCccc
Confidence            99999999994 5666888999999999999874

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.38  E-value=1.5e-12  Score=103.05  Aligned_cols=105  Identities=22%  Similarity=0.371  Sum_probs=68.7

Q ss_pred             CCCeeeeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchhhccCcc
Q 046655           79 AGSVIGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRN  158 (194)
Q Consensus        79 ~~~~~~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~  158 (194)
                      ...+..|+.+++++|++. .++  .+..+++|++|++++| .+++. +. +..+++|++|++++|++++ ++. +..+++
T Consensus       103 ~~~l~~L~~L~l~~n~l~-~~~--~l~~l~~L~~L~l~~n-~l~~~-~~-l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~  174 (308)
T 1h6u_A          103 IAGLQSIKTLDLTSTQIT-DVT--PLAGLSNLQVLYLDLN-QITNI-SP-LAGLTNLQYLSIGNAQVSD-LTP-LANLSK  174 (308)
T ss_dssp             GTTCTTCCEEECTTSCCC-CCG--GGTTCTTCCEEECCSS-CCCCC-GG-GGGCTTCCEEECCSSCCCC-CGG-GTTCTT
T ss_pred             hcCCCCCCEEECCCCCCC-Cch--hhcCCCCCCEEECCCC-ccCcC-cc-ccCCCCccEEEccCCcCCC-Chh-hcCCCC
Confidence            445666777777888777 455  2677777777777777 66643 32 6677777777777777763 333 666667


Q ss_pred             cceeecccCccCCCCccccCCCCCCCeEeccCCcC
Q 046655          159 LVHLDLSDNYLSGYIPPTLGRLSKLEILNLSSNDL  193 (194)
Q Consensus       159 L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l  193 (194)
                      |+.|++++|++++ ++. +..+++|++|++++|++
T Consensus       175 L~~L~l~~n~l~~-~~~-l~~l~~L~~L~L~~N~l  207 (308)
T 1h6u_A          175 LTTLKADDNKISD-ISP-LASLPNLIEVHLKNNQI  207 (308)
T ss_dssp             CCEEECCSSCCCC-CGG-GGGCTTCCEEECTTSCC
T ss_pred             CCEEECCCCccCc-Chh-hcCCCCCCEEEccCCcc
Confidence            7777777777663 333 56666666666666655

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.38  E-value=2e-12  Score=101.59  Aligned_cols=106  Identities=23%  Similarity=0.362  Sum_probs=91.2

Q ss_pred             CCCeeeeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchhhccCcc
Q 046655           79 AGSVIGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRN  158 (194)
Q Consensus        79 ~~~~~~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~  158 (194)
                      ...+..|+.+++++|+++ .++ . +..+++|++|++++| .+++ + +.+..+++|++|++++|++.+ + +.+..+++
T Consensus        64 ~~~l~~L~~L~L~~n~l~-~~~-~-l~~l~~L~~L~l~~n-~l~~-~-~~l~~l~~L~~L~L~~n~i~~-~-~~l~~l~~  135 (291)
T 1h6t_A           64 IQYLPNVTKLFLNGNKLT-DIK-P-LANLKNLGWLFLDEN-KVKD-L-SSLKDLKKLKSLSLEHNGISD-I-NGLVHLPQ  135 (291)
T ss_dssp             GGGCTTCCEEECCSSCCC-CCG-G-GTTCTTCCEEECCSS-CCCC-G-GGGTTCTTCCEEECTTSCCCC-C-GGGGGCTT
T ss_pred             HhcCCCCCEEEccCCccC-CCc-c-cccCCCCCEEECCCC-cCCC-C-hhhccCCCCCEEECCCCcCCC-C-hhhcCCCC
Confidence            455677888999999999 666 3 889999999999999 7775 3 448999999999999999985 3 56889999


Q ss_pred             cceeecccCccCCCCccccCCCCCCCeEeccCCcCC
Q 046655          159 LVHLDLSDNYLSGYIPPTLGRLSKLEILNLSSNDLY  194 (194)
Q Consensus       159 L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~ls  194 (194)
                      |+.|++++|++++.  ..+..+++|++|++++|.++
T Consensus       136 L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~  169 (291)
T 1h6t_A          136 LESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQIS  169 (291)
T ss_dssp             CCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCC
T ss_pred             CCEEEccCCcCCcc--hhhccCCCCCEEEccCCccc
Confidence            99999999999964  57889999999999999874

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.38  E-value=1.7e-12  Score=111.75  Aligned_cols=103  Identities=30%  Similarity=0.484  Sum_probs=51.3

Q ss_pred             CeeeeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchhhccCcccc
Q 046655           81 SVIGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLV  160 (194)
Q Consensus        81 ~~~~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~  160 (194)
                      .+..|+.|++++|++. .++  .+..+++|++|++++| .+.+ + +.+..+++|+.|+|++|++++.  ..+..+++|+
T Consensus        85 ~l~~L~~L~Ls~N~l~-~l~--~l~~l~~L~~L~Ls~N-~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~  156 (605)
T 1m9s_A           85 NLKNLGWLFLDENKIK-DLS--SLKDLKKLKSLSLEHN-GISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLD  156 (605)
T ss_dssp             GCTTCCEEECCSSCCC-CCT--TSTTCTTCCEEECTTS-CCCC-C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCS
T ss_pred             cCCCCCEEECcCCCCC-CCh--hhccCCCCCEEEecCC-CCCC-C-ccccCCCccCEEECCCCccCCc--hhhcccCCCC
Confidence            3444444555555554 333  3445555555555555 4443 2 2345555555555555555532  3445555555


Q ss_pred             eeecccCccCCCCccccCCCCCCCeEeccCCcC
Q 046655          161 HLDLSDNYLSGYIPPTLGRLSKLEILNLSSNDL  193 (194)
Q Consensus       161 ~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l  193 (194)
                      .|+|++|++++..|  +..+++|+.|+|++|.|
T Consensus       157 ~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i  187 (605)
T 1m9s_A          157 TLSLEDNQISDIVP--LAGLTKLQNLYLSKNHI  187 (605)
T ss_dssp             EEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred             EEECcCCcCCCchh--hccCCCCCEEECcCCCC
Confidence            55555555553322  45555555555555544

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.36  E-value=1.9e-12  Score=103.56  Aligned_cols=107  Identities=25%  Similarity=0.339  Sum_probs=89.9

Q ss_pred             CCeeeeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchhhccCccc
Q 046655           80 GSVIGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNL  159 (194)
Q Consensus        80 ~~~~~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L  159 (194)
                      ....+|+.+++++|+++ .++ . +..+++|++|++++| .+++ + +.+..+++|++|++++|++.+ + +.+..+++|
T Consensus       218 ~~~~~L~~L~l~~n~l~-~~~-~-~~~l~~L~~L~l~~n-~l~~-~-~~~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L  289 (347)
T 4fmz_A          218 ANMTRLNSLKIGNNKIT-DLS-P-LANLSQLTWLEIGTN-QISD-I-NAVKDLTKLKMLNVGSNQISD-I-SVLNNLSQL  289 (347)
T ss_dssp             GGCTTCCEEECCSSCCC-CCG-G-GTTCTTCCEEECCSS-CCCC-C-GGGTTCTTCCEEECCSSCCCC-C-GGGGGCTTC
T ss_pred             hcCCcCCEEEccCCccC-CCc-c-hhcCCCCCEEECCCC-ccCC-C-hhHhcCCCcCEEEccCCccCC-C-hhhcCCCCC
Confidence            44566777888999888 666 3 788999999999999 7774 3 568889999999999999985 3 458889999


Q ss_pred             ceeecccCccCCCCccccCCCCCCCeEeccCCcCC
Q 046655          160 VHLDLSDNYLSGYIPPTLGRLSKLEILNLSSNDLY  194 (194)
Q Consensus       160 ~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~ls  194 (194)
                      +.|++++|++++..|..+..+++|++|++++|+++
T Consensus       290 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~  324 (347)
T 4fmz_A          290 NSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHIT  324 (347)
T ss_dssp             SEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCC
T ss_pred             CEEECcCCcCCCcChhHhhccccCCEEEccCCccc
Confidence            99999999999888888999999999999999874

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.34  E-value=2.9e-12  Score=110.30  Aligned_cols=106  Identities=25%  Similarity=0.434  Sum_probs=93.1

Q ss_pred             CCCCeeeeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchhhccCc
Q 046655           78 SAGSVIGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLR  157 (194)
Q Consensus        78 ~~~~~~~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~  157 (194)
                      ....+..|+.|++++|++. .++  .+..+++|+.|++++| .+++.  ..+..+++|+.|+|++|.+.+..|  +..++
T Consensus       104 ~l~~l~~L~~L~Ls~N~l~-~l~--~l~~l~~L~~L~Ls~N-~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~  175 (605)
T 1m9s_A          104 SLKDLKKLKSLSLEHNGIS-DIN--GLVHLPQLESLYLGNN-KITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLT  175 (605)
T ss_dssp             TSTTCTTCCEEECTTSCCC-CCG--GGGGCTTCSEEECCSS-CCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCT
T ss_pred             hhccCCCCCEEEecCCCCC-CCc--cccCCCccCEEECCCC-ccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCC
Confidence            4567788888999999999 565  5889999999999999 88864  678999999999999999996655  89999


Q ss_pred             ccceeecccCccCCCCccccCCCCCCCeEeccCCcC
Q 046655          158 NLVHLDLSDNYLSGYIPPTLGRLSKLEILNLSSNDL  193 (194)
Q Consensus       158 ~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l  193 (194)
                      +|+.|+|++|++++ +| .+..+++|+.|++++|++
T Consensus       176 ~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~L~~N~l  209 (605)
T 1m9s_A          176 KLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQEC  209 (605)
T ss_dssp             TCCEEECCSSCCCB-CG-GGTTCTTCSEEECCSEEE
T ss_pred             CCCEEECcCCCCCC-Ch-HHccCCCCCEEEccCCcC
Confidence            99999999999995 44 689999999999999975

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.33  E-value=6.3e-12  Score=91.60  Aligned_cols=87  Identities=24%  Similarity=0.291  Sum_probs=75.1

Q ss_pred             eeeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchhhccCccccee
Q 046655           83 IGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHL  162 (194)
Q Consensus        83 ~~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L  162 (194)
                      ..++.+++++|++.+..| ..|..+++|++|++++| .+++..+..|..+++|++|+|++|++++..+..|..+++|++|
T Consensus        33 ~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L  110 (174)
T 2r9u_A           33 TDKQRLWLNNNQITKLEP-GVFDHLVNLQQLYFNSN-KLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHI  110 (174)
T ss_dssp             TTCSEEECCSSCCCCCCT-TTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEE
T ss_pred             CCCcEEEeCCCCccccCH-HHhcCCcCCCEEECCCC-CCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEE
Confidence            557779999999994445 78999999999999999 8997555567899999999999999995544559999999999


Q ss_pred             ecccCccCC
Q 046655          163 DLSDNYLSG  171 (194)
Q Consensus       163 ~L~~N~l~g  171 (194)
                      ++++|.++.
T Consensus       111 ~L~~N~~~c  119 (174)
T 2r9u_A          111 YLYNNPWDC  119 (174)
T ss_dssp             ECCSSCBCT
T ss_pred             EeCCCCccc
Confidence            999999984

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.29  E-value=8.7e-12  Score=106.60  Aligned_cols=95  Identities=19%  Similarity=0.291  Sum_probs=60.3

Q ss_pred             eeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchhhccCccc-----
Q 046655           85 VSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNL-----  159 (194)
Q Consensus        85 l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L-----  159 (194)
                      |+.+++++|+++ .+| .   .+++|++|++++| .+++ +|. |.  ++|+.|+|++|+++ .+|. +..  +|     
T Consensus       142 L~~L~Ls~N~l~-~lp-~---~l~~L~~L~Ls~N-~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~  207 (571)
T 3cvr_A          142 LEYINADNNQLT-MLP-E---LPTSLEVLSVRNN-QLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEE  207 (571)
T ss_dssp             CCEEECCSSCCS-CCC-C---CCTTCCEEECCSS-CCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------
T ss_pred             ccEEeCCCCccC-cCC-C---cCCCcCEEECCCC-CCCC-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccc
Confidence            333444444444 244 2   3455666666666 5554 555 44  66777777777777 5665 443  56     


Q ss_pred             --ceeecccCccCCCCccccCCCCCCCeEeccCCcCC
Q 046655          160 --VHLDLSDNYLSGYIPPTLGRLSKLEILNLSSNDLY  194 (194)
Q Consensus       160 --~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~ls  194 (194)
                        +.|++++|+++ .+|..+..+++|+.|++++|+++
T Consensus       208 ~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~  243 (571)
T 3cvr_A          208 TEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLS  243 (571)
T ss_dssp             CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCC
T ss_pred             cceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCC
Confidence              88888888888 57887777888888888888774

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.28  E-value=1.4e-11  Score=102.69  Aligned_cols=102  Identities=20%  Similarity=0.317  Sum_probs=46.4

Q ss_pred             eeeeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchhhccCcccce
Q 046655           82 VIGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVH  161 (194)
Q Consensus        82 ~~~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~  161 (194)
                      ..+|+.+++++|++. .++ . +..+++|++|++++| .+.+. +. +..+++|+.|++++|++.+..|  +..+++|+.
T Consensus       264 l~~L~~L~l~~n~l~-~~~-~-~~~l~~L~~L~L~~n-~l~~~-~~-~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~  335 (466)
T 1o6v_A          264 LTKLTELKLGANQIS-NIS-P-LAGLTALTNLELNEN-QLEDI-SP-ISNLKNLTYLTLYFNNISDISP--VSSLTKLQR  335 (466)
T ss_dssp             CTTCSEEECCSSCCC-CCG-G-GTTCTTCSEEECCSS-CCSCC-GG-GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCE
T ss_pred             CCCCCEEECCCCccC-ccc-c-ccCCCccCeEEcCCC-cccCc-hh-hcCCCCCCEEECcCCcCCCchh--hccCccCCE
Confidence            334444444555544 333 1 444455555555555 44432 11 4445555555555555543322  344444444


Q ss_pred             eecccCccCCCCccccCCCCCCCeEeccCCcC
Q 046655          162 LDLSDNYLSGYIPPTLGRLSKLEILNLSSNDL  193 (194)
Q Consensus       162 L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l  193 (194)
                      |++++|++++.  ..+..+++|+.|++++|++
T Consensus       336 L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l  365 (466)
T 1o6v_A          336 LFFYNNKVSDV--SSLANLTNINWLSAGHNQI  365 (466)
T ss_dssp             EECCSSCCCCC--GGGTTCTTCCEEECCSSCC
T ss_pred             eECCCCccCCc--hhhccCCCCCEEeCCCCcc
Confidence            44444444432  2344444555555554443

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.28  E-value=4.3e-12  Score=108.46  Aligned_cols=74  Identities=27%  Similarity=0.383  Sum_probs=37.8

Q ss_pred             CCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchhhccCcccceeecccCccCCCCccccCCCCCCCeE
Q 046655          107 FPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLSDNYLSGYIPPTLGRLSKLEIL  186 (194)
Q Consensus       107 l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L  186 (194)
                      +++|++|++++| .+++ +|. +..  +|++|++++|++++ +|.   .+++|+.|++++|++++ +|.   .+++|++|
T Consensus        99 l~~L~~L~Ls~N-~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L  165 (571)
T 3cvr_A           99 PASLEYLDACDN-RLST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVL  165 (571)
T ss_dssp             CTTCCEEECCSS-CCSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEE
T ss_pred             cCCCCEEEccCC-CCCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEE
Confidence            344555555555 4443 444 332  55555555555553 443   34555555566555553 444   34555566


Q ss_pred             eccCCcC
Q 046655          187 NLSSNDL  193 (194)
Q Consensus       187 ~ls~N~l  193 (194)
                      ++++|+|
T Consensus       166 ~Ls~N~L  172 (571)
T 3cvr_A          166 SVRNNQL  172 (571)
T ss_dssp             ECCSSCC
T ss_pred             ECCCCCC
Confidence            6665554

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.28  E-value=2.2e-14  Score=106.61  Aligned_cols=107  Identities=25%  Similarity=0.328  Sum_probs=90.9

Q ss_pred             CCCeeeeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchhhccCcc
Q 046655           79 AGSVIGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRN  158 (194)
Q Consensus        79 ~~~~~~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~  158 (194)
                      .+.+..|+.+++++|++. .+|  .+..+++|++|++++| .++ .+|..+..+++|++|++++|++++ +| .+..+++
T Consensus        44 ~~~l~~L~~L~ls~n~l~-~l~--~~~~l~~L~~L~l~~n-~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~  116 (198)
T 1ds9_A           44 LSTLKACKHLALSTNNIE-KIS--SLSGMENLRILSLGRN-LIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVN  116 (198)
T ss_dssp             HHHTTTCSEEECSEEEES-CCC--CHHHHTTCCEEEEEEE-EEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHH
T ss_pred             HhcCCCCCEEECCCCCCc-ccc--ccccCCCCCEEECCCC-Ccc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCC
Confidence            445667888889999998 577  6788999999999999 777 578877788999999999999985 45 6888999


Q ss_pred             cceeecccCccCCCCc--cccCCCCCCCeEeccCCcC
Q 046655          159 LVHLDLSDNYLSGYIP--PTLGRLSKLEILNLSSNDL  193 (194)
Q Consensus       159 L~~L~L~~N~l~g~~p--~~~~~l~~L~~L~ls~N~l  193 (194)
                      |++|++++|++++ ++  ..+..+++|++|++++|++
T Consensus       117 L~~L~l~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~l  152 (198)
T 1ds9_A          117 LRVLYMSNNKITN-WGEIDKLAALDKLEDLLLAGNPL  152 (198)
T ss_dssp             SSEEEESEEECCC-HHHHHHHTTTTTCSEEEECSCHH
T ss_pred             CCEEECCCCcCCc-hhHHHHHhcCCCCCEEEecCCcc
Confidence            9999999999994 44  3688999999999999975

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.27  E-value=7.8e-12  Score=104.14  Aligned_cols=105  Identities=19%  Similarity=0.323  Sum_probs=91.3

Q ss_pred             CCCeeeeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchhhccCcc
Q 046655           79 AGSVIGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRN  158 (194)
Q Consensus        79 ~~~~~~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~  158 (194)
                      ...++.|+.+++++|++. .++ . +..+++|++|++++| .+++..|  +..+++|++|++++|++++.  ..+..+++
T Consensus       283 ~~~l~~L~~L~L~~n~l~-~~~-~-~~~l~~L~~L~L~~n-~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~  354 (466)
T 1o6v_A          283 LAGLTALTNLELNENQLE-DIS-P-ISNLKNLTYLTLYFN-NISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTN  354 (466)
T ss_dssp             GTTCTTCSEEECCSSCCS-CCG-G-GGGCTTCSEEECCSS-CCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTT
T ss_pred             ccCCCccCeEEcCCCccc-Cch-h-hcCCCCCCEEECcCC-cCCCchh--hccCccCCEeECCCCccCCc--hhhccCCC
Confidence            456677888999999999 555 2 788999999999999 8886544  78999999999999999964  57889999


Q ss_pred             cceeecccCccCCCCccccCCCCCCCeEeccCCcC
Q 046655          159 LVHLDLSDNYLSGYIPPTLGRLSKLEILNLSSNDL  193 (194)
Q Consensus       159 L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l  193 (194)
                      |+.|++++|++++..|  +..+++|+.|++++|++
T Consensus       355 L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~  387 (466)
T 1o6v_A          355 INWLSAGHNQISDLTP--LANLTRITQLGLNDQAW  387 (466)
T ss_dssp             CCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEE
T ss_pred             CCEEeCCCCccCccch--hhcCCCCCEEeccCCcc
Confidence            9999999999998766  89999999999999975

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.27  E-value=3.7e-14  Score=105.31  Aligned_cols=86  Identities=20%  Similarity=0.266  Sum_probs=78.1

Q ss_pred             ccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchhhccCcccceeecccCccCCCCccccCCCCC
Q 046655          103 KFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLSDNYLSGYIPPTLGRLSK  182 (194)
Q Consensus       103 ~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~  182 (194)
                      .+..+++|++|++++| .+++ +| .+..+++|++|++++|.+. .+|..+..+++|+.|++++|++++ +| .+..+++
T Consensus        43 ~~~~l~~L~~L~ls~n-~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~  116 (198)
T 1ds9_A           43 TLSTLKACKHLALSTN-NIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVN  116 (198)
T ss_dssp             HHHHTTTCSEEECSEE-EESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHH
T ss_pred             HHhcCCCCCEEECCCC-CCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCC
Confidence            7888999999999999 8886 67 8899999999999999999 788888888999999999999995 56 6888999


Q ss_pred             CCeEeccCCcCC
Q 046655          183 LEILNLSSNDLY  194 (194)
Q Consensus       183 L~~L~ls~N~ls  194 (194)
                      |++|++++|+++
T Consensus       117 L~~L~l~~N~i~  128 (198)
T 1ds9_A          117 LRVLYMSNNKIT  128 (198)
T ss_dssp             SSEEEESEEECC
T ss_pred             CCEEECCCCcCC
Confidence            999999999874

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.24  E-value=1.2e-11  Score=103.19  Aligned_cols=109  Identities=23%  Similarity=0.292  Sum_probs=82.3

Q ss_pred             CcccccceeCCCCCeeeeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccc
Q 046655           68 HCKWTGVSCNSAGSVIGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTG  147 (194)
Q Consensus        68 ~c~~~gv~c~~~~~~~~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~  147 (194)
                      .|.+.++.  ..+.++.|+.+++++|+++ .+|   +..+++|++|++++| .+++ ++  ++.+++|++|++++|++++
T Consensus        51 ~n~l~~~~--~l~~l~~L~~L~Ls~n~l~-~~~---~~~l~~L~~L~Ls~N-~l~~-~~--~~~l~~L~~L~L~~N~l~~  120 (457)
T 3bz5_A           51 NSSITDMT--GIEKLTGLTKLICTSNNIT-TLD---LSQNTNLTYLACDSN-KLTN-LD--VTPLTKLTYLNCDTNKLTK  120 (457)
T ss_dssp             SSCCCCCT--TGGGCTTCSEEECCSSCCS-CCC---CTTCTTCSEEECCSS-CCSC-CC--CTTCTTCCEEECCSSCCSC
T ss_pred             CCCcccCh--hhcccCCCCEEEccCCcCC-eEc---cccCCCCCEEECcCC-CCce-ee--cCCCCcCCEEECCCCcCCe
Confidence            34455542  3456677777888888888 454   677888888888888 7775 33  7788888888888888885


Q ss_pred             cCchhhccCcccceeecccCccCCCCccccCCCCCCCeEeccCCc
Q 046655          148 IIPLEMGRLRNLVHLDLSDNYLSGYIPPTLGRLSKLEILNLSSND  192 (194)
Q Consensus       148 ~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~  192 (194)
                       +|  ++.+++|++|++++|++++ ++  ++++++|++|++++|+
T Consensus       121 -l~--~~~l~~L~~L~l~~N~l~~-l~--l~~l~~L~~L~l~~n~  159 (457)
T 3bz5_A          121 -LD--VSQNPLLTYLNCARNTLTE-ID--VSHNTQLTELDCHLNK  159 (457)
T ss_dssp             -CC--CTTCTTCCEEECTTSCCSC-CC--CTTCTTCCEEECTTCS
T ss_pred             -ec--CCCCCcCCEEECCCCccce-ec--cccCCcCCEEECCCCC
Confidence             44  7788888888888888886 43  7788888888888883

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.23  E-value=6.1e-11  Score=98.80  Aligned_cols=79  Identities=22%  Similarity=0.328  Sum_probs=43.2

Q ss_pred             CCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchhhccCcccceeecccCccCCCCccccCCCCCCC
Q 046655          105 SCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLSDNYLSGYIPPTLGRLSKLE  184 (194)
Q Consensus       105 ~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~  184 (194)
                      ..+++|++|++++| .+++ +|  +..+++|+.|++++|++++.   .++.+++|+.|++++|++++ +|  ++.+++|+
T Consensus       167 ~~l~~L~~L~ls~n-~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~  236 (457)
T 3bz5_A          167 TPQTQLTTLDCSFN-KITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLT  236 (457)
T ss_dssp             TTCTTCCEEECCSS-CCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCS
T ss_pred             ccCCcCCEEECCCC-ccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCC
Confidence            34445555555555 4443 23  44555555555555555532   25555666666666666664 44  55666666


Q ss_pred             eEeccCCcC
Q 046655          185 ILNLSSNDL  193 (194)
Q Consensus       185 ~L~ls~N~l  193 (194)
                      +|++++|++
T Consensus       237 ~L~l~~N~l  245 (457)
T 3bz5_A          237 YFDCSVNPL  245 (457)
T ss_dssp             EEECCSSCC
T ss_pred             EEEeeCCcC
Confidence            666666654

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.22  E-value=1.4e-12  Score=103.86  Aligned_cols=109  Identities=22%  Similarity=0.195  Sum_probs=60.2

Q ss_pred             CeeeeeeeeccCCccccc-cCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCC-ccccc-CchhhccCc
Q 046655           81 SVIGVSLLWYENDNITGE-LGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSS-SLTGI-IPLEMGRLR  157 (194)
Q Consensus        81 ~~~~l~~l~l~~n~l~~~-lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n-~l~~~-~p~~~~~l~  157 (194)
                      ...+|+.+++++|.+.+. ++ ..+..+++|++|++++| .+++..+..++.+++|++|++++| .+++. ++..+..++
T Consensus        91 ~~~~L~~L~L~~~~l~~~~~~-~~~~~~~~L~~L~L~~~-~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~  168 (336)
T 2ast_B           91 SPFRVQHMDLSNSVIEVSTLH-GILSQCSKLQNLSLEGL-RLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCS  168 (336)
T ss_dssp             CCBCCCEEECTTCEECHHHHH-HHHTTBCCCSEEECTTC-BCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCT
T ss_pred             cCCCCCEEEccCCCcCHHHHH-HHHhhCCCCCEEeCcCc-ccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCC
Confidence            345555566666665543 44 44555666666666666 555445555555666666666666 45432 444455555


Q ss_pred             ccceeecccC-ccCCC-CccccCCCC-CCCeEeccCC
Q 046655          158 NLVHLDLSDN-YLSGY-IPPTLGRLS-KLEILNLSSN  191 (194)
Q Consensus       158 ~L~~L~L~~N-~l~g~-~p~~~~~l~-~L~~L~ls~N  191 (194)
                      +|++|++++| .+++. ++..+..++ +|++|++++|
T Consensus       169 ~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~  205 (336)
T 2ast_B          169 RLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGY  205 (336)
T ss_dssp             TCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSC
T ss_pred             CCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCC
Confidence            6666666665 55532 344455555 5555555555

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.22  E-value=1.6e-11  Score=98.80  Aligned_cols=120  Identities=18%  Similarity=0.169  Sum_probs=87.0

Q ss_pred             CCcccccceeCCC--CCe-----eeeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCC-ccccCCCCCCE-
Q 046655           67 YHCKWTGVSCNSA--GSV-----IGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIP-SEIAAVSMLQT-  137 (194)
Q Consensus        67 ~~c~~~gv~c~~~--~~~-----~~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p-~~~~~l~~L~~-  137 (194)
                      ..|.+..|.|...  ..+     +.++.|++++|+|+ .+|...|..+++|++|++++| .+.+.+| ..|.+++++++ 
T Consensus         7 C~C~~~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~Ls~N-~i~~~i~~~~f~~L~~l~~~   84 (350)
T 4ay9_X            7 CHCSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQN-DVLEVIEADVFSNLPKLHEI   84 (350)
T ss_dssp             SEEETTEEEEESTTCCSCCTTCCTTCSEEEEESCCCS-EECTTSSTTCTTCCEEEEECC-TTCCEECTTSBCSCTTCCEE
T ss_pred             cEeeCCEEEecCCCCCccCcCcCCCCCEEEccCCcCC-CcCHHHHcCCCCCCEEECcCC-CCCCccChhHhhcchhhhhh
Confidence            3477888888631  111     34666889999999 888667899999999999999 7655555 45778888775 


Q ss_pred             eecCCCcccccCchhhccCcccceeecccCccCCCCccccCCCCCCCeEec
Q 046655          138 LELPSSSLTGIIPLEMGRLRNLVHLDLSDNYLSGYIPPTLGRLSKLEILNL  188 (194)
Q Consensus       138 L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~l  188 (194)
                      +.+..|++....|..|..+++|+++++++|++++..+..+....++..+++
T Consensus        85 l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l  135 (350)
T 4ay9_X           85 RIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDI  135 (350)
T ss_dssp             EEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEE
T ss_pred             hcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhh
Confidence            566778998777788899999999999999988544433333333444444

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.20  E-value=2.9e-12  Score=101.91  Aligned_cols=109  Identities=24%  Similarity=0.247  Sum_probs=92.6

Q ss_pred             eeeeeeeccCCccccccCccccCCCCCccEEEecCCCCCccc-CCccccCCCCCCEeecCCCcccccCchhhccCcccce
Q 046655           83 IGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGS-IPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVH  161 (194)
Q Consensus        83 ~~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~-~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~  161 (194)
                      ..++.+++++|.+.+..+  .+..+++|++|++++| .+++. ++..+..+++|++|++++|.+.+..|..+..+++|++
T Consensus        70 ~~l~~L~l~~n~l~~~~~--~~~~~~~L~~L~L~~~-~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~  146 (336)
T 2ast_B           70 QGVIAFRCPRSFMDQPLA--EHFSPFRVQHMDLSNS-VIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVR  146 (336)
T ss_dssp             TTCSEEECTTCEECSCCC--SCCCCBCCCEEECTTC-EECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSE
T ss_pred             ccceEEEcCCccccccch--hhccCCCCCEEEccCC-CcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCE
Confidence            456667889999986555  4667899999999999 77755 7778889999999999999999888889999999999


Q ss_pred             eecccC-ccCC-CCccccCCCCCCCeEeccCC-cCC
Q 046655          162 LDLSDN-YLSG-YIPPTLGRLSKLEILNLSSN-DLY  194 (194)
Q Consensus       162 L~L~~N-~l~g-~~p~~~~~l~~L~~L~ls~N-~ls  194 (194)
                      |++++| .+++ .++..+..+++|++|++++| .++
T Consensus       147 L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~  182 (336)
T 2ast_B          147 LNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFT  182 (336)
T ss_dssp             EECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCC
T ss_pred             EECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcC
Confidence            999999 6875 36777888999999999999 663

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.18  E-value=3.2e-12  Score=103.93  Aligned_cols=110  Identities=16%  Similarity=0.176  Sum_probs=66.5

Q ss_pred             eeeeeeccCCccccc----cCccccCCCCCccEEEecCCCCCc----ccCCccccCCCCCCEeecCCCccccc----Cch
Q 046655           84 GVSLLWYENDNITGE----LGRFKFSCFPNLKSFKIHSNYLLS----GSIPSEIAAVSMLQTLELPSSSLTGI----IPL  151 (194)
Q Consensus        84 ~l~~l~l~~n~l~~~----lp~~~~~~l~~L~~L~l~~n~~l~----~~~p~~~~~l~~L~~L~L~~n~l~~~----~p~  151 (194)
                      .|+.+++++|++...    +.+..+..+++|++|++++| .++    +.+|..+..+++|++|+|++|.+++.    +|.
T Consensus       188 ~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n-~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~  266 (386)
T 2ca6_A          188 LLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDN-TFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVD  266 (386)
T ss_dssp             TCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSS-CCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHH
T ss_pred             CcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCC-CCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHH
Confidence            455555666665521    11024556666777777777 554    34556666667777777777776644    344


Q ss_pred             hhc--cCcccceeecccCccCC----CCcccc-CCCCCCCeEeccCCcCC
Q 046655          152 EMG--RLRNLVHLDLSDNYLSG----YIPPTL-GRLSKLEILNLSSNDLY  194 (194)
Q Consensus       152 ~~~--~l~~L~~L~L~~N~l~g----~~p~~~-~~l~~L~~L~ls~N~ls  194 (194)
                      .+.  .+++|+.|++++|.+++    .+|..+ .++++|++|++++|+++
T Consensus       267 ~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~  316 (386)
T 2ca6_A          267 AFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS  316 (386)
T ss_dssp             HHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred             HHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCC
Confidence            443  26677777777777775    366655 45677777777777653

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.18  E-value=5.3e-11  Score=95.32  Aligned_cols=90  Identities=21%  Similarity=0.194  Sum_probs=77.5

Q ss_pred             CCCeeeeeeeeccC-CccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchhhccCc
Q 046655           79 AGSVIGVSLLWYEN-DNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLR  157 (194)
Q Consensus        79 ~~~~~~l~~l~l~~-n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~  157 (194)
                      .+..++|+.|+|++ |++. .++...|..+++|++|+|++| .+++..|..|..+++|++|+|++|++++..+..+..++
T Consensus        27 l~~~~~L~~L~l~~~n~l~-~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~  104 (347)
T 2ifg_A           27 LPGAENLTELYIENQQHLQ-HLELRDLRGLGELRNLTIVKS-GLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS  104 (347)
T ss_dssp             SCSCSCCSEEECCSCSSCC-EECGGGSCSCCCCSEEECCSS-CCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC
T ss_pred             CCCCCCeeEEEccCCCCCC-CcChhHhccccCCCEEECCCC-ccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC
Confidence            56677888899997 9999 666478999999999999999 99998888999999999999999999955445565555


Q ss_pred             ccceeecccCccCC
Q 046655          158 NLVHLDLSDNYLSG  171 (194)
Q Consensus       158 ~L~~L~L~~N~l~g  171 (194)
                       |+.|++.+|.+..
T Consensus       105 -L~~l~l~~N~~~c  117 (347)
T 2ifg_A          105 -LQELVLSGNPLHC  117 (347)
T ss_dssp             -CCEEECCSSCCCC
T ss_pred             -ceEEEeeCCCccC
Confidence             9999999999984

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.17  E-value=1.4e-10  Score=100.21  Aligned_cols=77  Identities=30%  Similarity=0.417  Sum_probs=64.8

Q ss_pred             CCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchhhccCcccceeecccCccCCCCccccCCCCCCCeEe
Q 046655          108 PNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLSDNYLSGYIPPTLGRLSKLEILN  187 (194)
Q Consensus       108 ~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~  187 (194)
                      ++|++|++++| .+++ +|   ..+++|++|++++|+++ .+|.   .+++|+.|++++|+++ .+|..+.++++|+.|+
T Consensus       221 ~~L~~L~Ls~N-~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~  290 (622)
T 3g06_A          221 SGLKELIVSGN-RLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVN  290 (622)
T ss_dssp             TTCCEEECCSS-CCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEE
T ss_pred             CCCCEEEccCC-ccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEE
Confidence            66888888888 7774 55   44578899999999988 5666   5688999999999999 7899999999999999


Q ss_pred             ccCCcCC
Q 046655          188 LSSNDLY  194 (194)
Q Consensus       188 ls~N~ls  194 (194)
                      +++|+++
T Consensus       291 L~~N~l~  297 (622)
T 3g06_A          291 LEGNPLS  297 (622)
T ss_dssp             CCSCCCC
T ss_pred             ecCCCCC
Confidence            9999874

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.15  E-value=5.8e-12  Score=101.72  Aligned_cols=125  Identities=18%  Similarity=0.210  Sum_probs=83.3

Q ss_pred             CCccccccee----CCCCCee-eeeeeeccCCccccccCccccCCC-----CCccEEEecCCCCCcccCCcccc----CC
Q 046655           67 YHCKWTGVSC----NSAGSVI-GVSLLWYENDNITGELGRFKFSCF-----PNLKSFKIHSNYLLSGSIPSEIA----AV  132 (194)
Q Consensus        67 ~~c~~~gv~c----~~~~~~~-~l~~l~l~~n~l~~~lp~~~~~~l-----~~L~~L~l~~n~~l~~~~p~~~~----~l  132 (194)
                      ..|.+.+..+    ....... .|+.+++++|++.+..+ ..+..+     +.|++|++++| .+++..+..+.    .+
T Consensus        30 s~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~-~~l~~~l~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~  107 (362)
T 3goz_A           30 SLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNS-DELVQILAAIPANVTSLNLSGN-FLSYKSSDELVKTLAAI  107 (362)
T ss_dssp             TTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCH-HHHHHHHHTSCTTCCEEECCSS-CGGGSCHHHHHHHHHTS
T ss_pred             cCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHH-HHHHHHHhccCCCccEEECcCC-cCChHHHHHHHHHHHhC
Confidence            4455555544    3334444 67777888888884444 445443     78888888888 77765554333    33


Q ss_pred             -CCCCEeecCCCcccccCchhhcc-----CcccceeecccCccCCC----CccccCCCC-CCCeEeccCCcC
Q 046655          133 -SMLQTLELPSSSLTGIIPLEMGR-----LRNLVHLDLSDNYLSGY----IPPTLGRLS-KLEILNLSSNDL  193 (194)
Q Consensus       133 -~~L~~L~L~~n~l~~~~p~~~~~-----l~~L~~L~L~~N~l~g~----~p~~~~~l~-~L~~L~ls~N~l  193 (194)
                       ++|++|++++|++++..+..+..     .++|++|++++|++++.    ++..+..++ +|++|++++|++
T Consensus       108 ~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l  179 (362)
T 3goz_A          108 PFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNL  179 (362)
T ss_dssp             CTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCG
T ss_pred             CCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCC
Confidence             78888888888888665554433     35888888888888853    333345555 888888888876

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.15  E-value=2.1e-10  Score=95.47  Aligned_cols=98  Identities=22%  Similarity=0.293  Sum_probs=50.6

Q ss_pred             eeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchhhccCc------
Q 046655           84 GVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLR------  157 (194)
Q Consensus        84 ~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~------  157 (194)
                      .|+.+++++|+++ .+|  .+..+++|++|++++| .+++ +|..+   .+|++|++++|++.+ +| .++.++      
T Consensus       132 ~L~~L~L~~n~l~-~lp--~~~~l~~L~~L~l~~N-~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~  201 (454)
T 1jl5_A          132 LLEYLGVSNNQLE-KLP--ELQNSSFLKIIDVDNN-SLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIY  201 (454)
T ss_dssp             TCCEEECCSSCCS-SCC--CCTTCTTCCEEECCSS-CCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEE
T ss_pred             CCCEEECcCCCCC-CCc--ccCCCCCCCEEECCCC-cCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEE
Confidence            4555566666666 355  2556666666666666 5543 33321   244444444444442 23 233333      


Q ss_pred             --------------ccceeecccCccCCCCccccCCCCCCCeEeccCCcC
Q 046655          158 --------------NLVHLDLSDNYLSGYIPPTLGRLSKLEILNLSSNDL  193 (194)
Q Consensus       158 --------------~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l  193 (194)
                                    +|+.|++++|+++ .+|. ++.+++|++|++++|++
T Consensus       202 l~~N~l~~l~~~~~~L~~L~l~~n~l~-~lp~-~~~l~~L~~L~l~~N~l  249 (454)
T 1jl5_A          202 ADNNSLKKLPDLPLSLESIVAGNNILE-ELPE-LQNLPFLTTIYADNNLL  249 (454)
T ss_dssp             CCSSCCSSCCCCCTTCCEEECCSSCCS-SCCC-CTTCTTCCEEECCSSCC
T ss_pred             CCCCcCCcCCCCcCcccEEECcCCcCC-cccc-cCCCCCCCEEECCCCcC
Confidence                          4444444444444 4453 66666777777776655

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.13  E-value=7.7e-11  Score=94.73  Aligned_cols=102  Identities=16%  Similarity=0.170  Sum_probs=84.4

Q ss_pred             eeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCch-hhccCcccce-eecc
Q 046655           88 LWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPL-EMGRLRNLVH-LDLS  165 (194)
Q Consensus        88 l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~-~~~~l~~L~~-L~L~  165 (194)
                      ++-++++++ ++| ..+  .+++++|++++| .++...+..|.++++|++|+|++|++.+.+|. .|.++++++. +.+.
T Consensus        14 v~C~~~~Lt-~iP-~~l--~~~l~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~   88 (350)
T 4ay9_X           14 FLCQESKVT-EIP-SDL--PRNAIELRFVLT-KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK   88 (350)
T ss_dssp             EEEESTTCC-SCC-TTC--CTTCSEEEEESC-CCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred             EEecCCCCC-ccC-cCc--CCCCCEEEccCC-cCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence            556788888 898 444  368999999999 88865455799999999999999999766665 5788888765 6667


Q ss_pred             cCccCCCCccccCCCCCCCeEeccCCcCC
Q 046655          166 DNYLSGYIPPTLGRLSKLEILNLSSNDLY  194 (194)
Q Consensus       166 ~N~l~g~~p~~~~~l~~L~~L~ls~N~ls  194 (194)
                      .|++++..|..|..+++|++|++++|+++
T Consensus        89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~  117 (350)
T 4ay9_X           89 ANNLLYINPEAFQNLPNLQYLLISNTGIK  117 (350)
T ss_dssp             ETTCCEECTTSBCCCTTCCEEEEEEECCS
T ss_pred             CCcccccCchhhhhccccccccccccccc
Confidence            89999777888999999999999999864

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.13  E-value=1.6e-11  Score=99.13  Aligned_cols=112  Identities=22%  Similarity=0.245  Sum_probs=87.6

Q ss_pred             CeeeeeeeeccCCccccccCc----cccCCCC-CccEEEecCCCCCcccCCccccCC-----CCCCEeecCCCcccccCc
Q 046655           81 SVIGVSLLWYENDNITGELGR----FKFSCFP-NLKSFKIHSNYLLSGSIPSEIAAV-----SMLQTLELPSSSLTGIIP  150 (194)
Q Consensus        81 ~~~~l~~l~l~~n~l~~~lp~----~~~~~l~-~L~~L~l~~n~~l~~~~p~~~~~l-----~~L~~L~L~~n~l~~~~p  150 (194)
                      ....|+.+++++|++. ..+.    ..+..++ +|++|++++| .+.+..+..+..+     ++|++|++++|.+++..+
T Consensus        20 ~~~~L~~L~Ls~n~l~-~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~   97 (362)
T 3goz_A           20 IPHGVTSLDLSLNNLY-SISTVELIQAFANTPASVTSLNLSGN-SLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSS   97 (362)
T ss_dssp             SCTTCCEEECTTSCGG-GSCHHHHHHHHHTCCTTCCEEECCSS-CGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCH
T ss_pred             CCCCceEEEccCCCCC-hHHHHHHHHHHHhCCCceeEEECcCC-CCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHH
Confidence            3344777888999988 5553    3566787 8999999999 8887767777765     899999999999997777


Q ss_pred             hhhcc----C-cccceeecccCccCCCCccc----cCC-CCCCCeEeccCCcCC
Q 046655          151 LEMGR----L-RNLVHLDLSDNYLSGYIPPT----LGR-LSKLEILNLSSNDLY  194 (194)
Q Consensus       151 ~~~~~----l-~~L~~L~L~~N~l~g~~p~~----~~~-l~~L~~L~ls~N~ls  194 (194)
                      ..+..    + ++|+.|++++|++++..+..    +.. .++|++|++++|.++
T Consensus        98 ~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~  151 (362)
T 3goz_A           98 DELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLG  151 (362)
T ss_dssp             HHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGG
T ss_pred             HHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCC
Confidence            65444    3 89999999999999665544    334 369999999999863

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.09  E-value=1.9e-11  Score=99.37  Aligned_cols=111  Identities=18%  Similarity=0.211  Sum_probs=64.8

Q ss_pred             CeeeeeeeeccCCcccc----ccCccccCCCCCccEEEecCCCCCcccCCcccc----CC---------CCCCEeecCCC
Q 046655           81 SVIGVSLLWYENDNITG----ELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIA----AV---------SMLQTLELPSS  143 (194)
Q Consensus        81 ~~~~l~~l~l~~n~l~~----~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~----~l---------~~L~~L~L~~n  143 (194)
                      ..+.|+.+++++|.+.+    .++ ..+..+++|++|++++| .+....+..+.    .+         ++|++|++++|
T Consensus        92 ~~~~L~~L~Ls~n~l~~~~~~~l~-~~l~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n  169 (386)
T 2ca6_A           92 KCPKLHTVRLSDNAFGPTAQEPLI-DFLSKHTPLEHLYLHNN-GLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRN  169 (386)
T ss_dssp             TCTTCCEEECCSCCCCTTTHHHHH-HHHHHCTTCCEEECCSS-CCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSS
T ss_pred             hCCcccEEECCCCcCCHHHHHHHH-HHHHhCCCCCEEECcCC-CCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCC
Confidence            34555556666666664    244 45556666666666666 55432222222    22         66777777777


Q ss_pred             ccc-ccCc---hhhccCcccceeecccCccC--C---CCccccCCCCCCCeEeccCCcC
Q 046655          144 SLT-GIIP---LEMGRLRNLVHLDLSDNYLS--G---YIPPTLGRLSKLEILNLSSNDL  193 (194)
Q Consensus       144 ~l~-~~~p---~~~~~l~~L~~L~L~~N~l~--g---~~p~~~~~l~~L~~L~ls~N~l  193 (194)
                      ++. +.+|   ..+..+++|+.|++++|+++  |   ..|..+.++++|++|++++|.+
T Consensus       170 ~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l  228 (386)
T 2ca6_A          170 RLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTF  228 (386)
T ss_dssp             CCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCC
T ss_pred             CCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCC
Confidence            665 2333   34556667777777777766  2   2333566677777777777765

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.08  E-value=5.9e-11  Score=102.47  Aligned_cols=94  Identities=28%  Similarity=0.345  Sum_probs=62.9

Q ss_pred             eeeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchhhccCccccee
Q 046655           83 IGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHL  162 (194)
Q Consensus        83 ~~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L  162 (194)
                      ..|+.+++++|+++ .+| .   .+++|++|++++| .++ .+|.   .+++|++|++++|+++ .+|.   .+++|+.|
T Consensus        61 ~~L~~L~L~~N~l~-~lp-~---~l~~L~~L~Ls~N-~l~-~lp~---~l~~L~~L~Ls~N~l~-~l~~---~l~~L~~L  126 (622)
T 3g06_A           61 AHITTLVIPDNNLT-SLP-A---LPPELRTLEVSGN-QLT-SLPV---LPPGLLELSIFSNPLT-HLPA---LPSGLCKL  126 (622)
T ss_dssp             TTCSEEEECSCCCS-CCC-C---CCTTCCEEEECSC-CCS-CCCC---CCTTCCEEEECSCCCC-CCCC---CCTTCCEE
T ss_pred             CCCcEEEecCCCCC-CCC-C---cCCCCCEEEcCCC-cCC-cCCC---CCCCCCEEECcCCcCC-CCCC---CCCCcCEE
Confidence            34555666777777 666 2   4567777777777 665 3554   5677777777777777 3444   45677777


Q ss_pred             ecccCccCCCCccccCCCCCCCeEeccCCcCC
Q 046655          163 DLSDNYLSGYIPPTLGRLSKLEILNLSSNDLY  194 (194)
Q Consensus       163 ~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~ls  194 (194)
                      ++++|+++ .+|..   +++|++|++++|+++
T Consensus       127 ~L~~N~l~-~lp~~---l~~L~~L~Ls~N~l~  154 (622)
T 3g06_A          127 WIFGNQLT-SLPVL---PPGLQELSVSDNQLA  154 (622)
T ss_dssp             ECCSSCCS-CCCCC---CTTCCEEECCSSCCS
T ss_pred             ECCCCCCC-cCCCC---CCCCCEEECcCCcCC
Confidence            77777777 35553   367888888887653

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.08  E-value=4.2e-10  Score=93.64  Aligned_cols=98  Identities=24%  Similarity=0.354  Sum_probs=76.4

Q ss_pred             eeeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchhhccCccccee
Q 046655           83 IGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHL  162 (194)
Q Consensus        83 ~~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L  162 (194)
                      ..|+.+++++|+++ .++ ..   .++|++|++++| .+++ +| .++.+++|++|++++|++++ +|..+   .+|++|
T Consensus       111 ~~L~~L~l~~n~l~-~l~-~~---~~~L~~L~L~~n-~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L  178 (454)
T 1jl5_A          111 QSLKSLLVDNNNLK-ALS-DL---PPLLEYLGVSNN-QLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFI  178 (454)
T ss_dssp             TTCCEEECCSSCCS-CCC-SC---CTTCCEEECCSS-CCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCCC---TTCCEE
T ss_pred             CCCcEEECCCCccC-ccc-CC---CCCCCEEECcCC-CCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCCc---ccccEE
Confidence            45556666777766 454 11   268899999999 7885 77 58899999999999999984 66543   589999


Q ss_pred             ecccCccCCCCccccCCCCCCCeEeccCCcCC
Q 046655          163 DLSDNYLSGYIPPTLGRLSKLEILNLSSNDLY  194 (194)
Q Consensus       163 ~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~ls  194 (194)
                      ++++|++++ +| .++++++|++|++++|.++
T Consensus       179 ~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~  208 (454)
T 1jl5_A          179 AAGNNQLEE-LP-ELQNLPFLTAIYADNNSLK  208 (454)
T ss_dssp             ECCSSCCSS-CC-CCTTCTTCCEEECCSSCCS
T ss_pred             ECcCCcCCc-Cc-cccCCCCCCEEECCCCcCC
Confidence            999999996 67 5889999999999998763

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=98.98  E-value=2.6e-11  Score=100.28  Aligned_cols=86  Identities=26%  Similarity=0.183  Sum_probs=57.9

Q ss_pred             CCccEEEecCCCCCccc----CCccccCCCCCCEeecCCCcccccCchhhcc-----CcccceeecccCccCC----CCc
Q 046655          108 PNLKSFKIHSNYLLSGS----IPSEIAAVSMLQTLELPSSSLTGIIPLEMGR-----LRNLVHLDLSDNYLSG----YIP  174 (194)
Q Consensus       108 ~~L~~L~l~~n~~l~~~----~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~-----l~~L~~L~L~~N~l~g----~~p  174 (194)
                      +.|++|++++| .+++.    ++..+..+++|++|++++|.+.+..+..+..     .++|+.|++++|++++    .+|
T Consensus       313 ~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~  391 (461)
T 1z7x_W          313 CQLESLWVKSC-SFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLA  391 (461)
T ss_dssp             CCCCEEECTTS-CCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHH
T ss_pred             ccceeeEcCCC-CCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHH
Confidence            35555555555 44432    2344555677888888888777554444432     5688888888888875    677


Q ss_pred             cccCCCCCCCeEeccCCcCC
Q 046655          175 PTLGRLSKLEILNLSSNDLY  194 (194)
Q Consensus       175 ~~~~~l~~L~~L~ls~N~ls  194 (194)
                      ..+..+++|++|++++|+|+
T Consensus       392 ~~l~~~~~L~~L~l~~N~i~  411 (461)
T 1z7x_W          392 ATLLANHSLRELDLSNNCLG  411 (461)
T ss_dssp             HHHHHCCCCCEEECCSSSCC
T ss_pred             HHHHhCCCccEEECCCCCCC
Confidence            77777888888888888764

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=98.89  E-value=9.4e-11  Score=96.95  Aligned_cols=109  Identities=24%  Similarity=0.227  Sum_probs=55.0

Q ss_pred             eeeeeeeccCCccccc----cCccccCCCCCccEEEecCCCCCcccCCccccC-----CCCCCEeecCCCccccc----C
Q 046655           83 IGVSLLWYENDNITGE----LGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAA-----VSMLQTLELPSSSLTGI----I  149 (194)
Q Consensus        83 ~~l~~l~l~~n~l~~~----lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~-----l~~L~~L~L~~n~l~~~----~  149 (194)
                      ..|+.+++++|++++.    ++ ..+..+++|++|++++| .+....+..+..     .++|++|++++|.+++.    +
T Consensus       256 ~~L~~L~L~~n~l~~~~~~~l~-~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l  333 (461)
T 1z7x_W          256 SRLRTLWIWECGITAKGCGDLC-RVLRAKESLKELSLAGN-ELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHF  333 (461)
T ss_dssp             CCCCEEECTTSCCCHHHHHHHH-HHHHHCTTCCEEECTTC-CCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred             CCceEEECcCCCCCHHHHHHHH-HHHhhCCCcceEECCCC-CCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHH
Confidence            3444455555555421    33 33444555555555555 443222222221     14566666666665543    3


Q ss_pred             chhhccCcccceeecccCccCCCCccccC----C-CCCCCeEeccCCcC
Q 046655          150 PLEMGRLRNLVHLDLSDNYLSGYIPPTLG----R-LSKLEILNLSSNDL  193 (194)
Q Consensus       150 p~~~~~l~~L~~L~L~~N~l~g~~p~~~~----~-l~~L~~L~ls~N~l  193 (194)
                      +..+..+++|+.|++++|++++..+..+.    . .++|++|++++|++
T Consensus       334 ~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i  382 (461)
T 1z7x_W          334 SSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDV  382 (461)
T ss_dssp             HHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCC
T ss_pred             HHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCC
Confidence            44455566666677766666643333222    1 45677777777665

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.85  E-value=2.1e-10  Score=89.02  Aligned_cols=79  Identities=25%  Similarity=0.324  Sum_probs=51.9

Q ss_pred             CCCCccEEEecCCCCCcc--cCCccccCCCCCCEeecCCCcccccCchhhccCc--ccceeecccCccCCCCcc------
Q 046655          106 CFPNLKSFKIHSNYLLSG--SIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLR--NLVHLDLSDNYLSGYIPP------  175 (194)
Q Consensus       106 ~l~~L~~L~l~~n~~l~~--~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~--~L~~L~L~~N~l~g~~p~------  175 (194)
                      .++.|++|+|++| .+++  .+|..+..+++|+.|+|++|++.+.  ..+..+.  .|+.|+|++|.+.+.+|.      
T Consensus       168 ~l~~L~~L~Ls~N-~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~  244 (267)
T 3rw6_A          168 NIPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS  244 (267)
T ss_dssp             HCTTCCEEECTTS-CCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred             hCCCCCEEECCCC-CCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence            4567777777777 6665  3445556777777777777777743  3334443  777777777777765552      


Q ss_pred             -ccCCCCCCCeEe
Q 046655          176 -TLGRLSKLEILN  187 (194)
Q Consensus       176 -~~~~l~~L~~L~  187 (194)
                       .+..+++|+.||
T Consensus       245 ~il~~~P~L~~LD  257 (267)
T 3rw6_A          245 AIRERFPKLLRLD  257 (267)
T ss_dssp             HHHHHCTTCCEES
T ss_pred             HHHHHCcccCeEC
Confidence             255677777766

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.80  E-value=6.7e-10  Score=90.22  Aligned_cols=110  Identities=17%  Similarity=0.212  Sum_probs=72.6

Q ss_pred             eeeeeeeccCCccccccCcccc-----CCCCCccEEEecCCCCCccc----CCccccCCCCCCEeecCCCccccc----C
Q 046655           83 IGVSLLWYENDNITGELGRFKF-----SCFPNLKSFKIHSNYLLSGS----IPSEIAAVSMLQTLELPSSSLTGI----I  149 (194)
Q Consensus        83 ~~l~~l~l~~n~l~~~lp~~~~-----~~l~~L~~L~l~~n~~l~~~----~p~~~~~l~~L~~L~L~~n~l~~~----~  149 (194)
                      .+++.+++++|+++..-. ..+     ...+.|++|++++| .++..    ++..+...++|++|+|++|.+.+.    +
T Consensus       126 ~~L~~L~Ls~n~l~~~~~-~~L~~~L~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L  203 (372)
T 3un9_A          126 LRARKLGLQLNSLGPEAC-KDLRDLLLHDQCQITTLRLSNN-PLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELL  203 (372)
T ss_dssp             HTEEEEECCSSCCCHHHH-HHHHHHHHSTTCCCCEEECCSS-CCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHH
T ss_pred             HhccHhhcCCCCCCHHHH-HHHHHHHHhcCCccceeeCCCC-CCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHH
Confidence            345567777777653211 222     24567888888888 66531    333345677888888888888743    2


Q ss_pred             chhhccCcccceeecccCccCC----CCccccCCCCCCCeEeccCCcCC
Q 046655          150 PLEMGRLRNLVHLDLSDNYLSG----YIPPTLGRLSKLEILNLSSNDLY  194 (194)
Q Consensus       150 p~~~~~l~~L~~L~L~~N~l~g----~~p~~~~~l~~L~~L~ls~N~ls  194 (194)
                      +..+...++|+.|++++|.++.    .+...+...++|++|++++|.|+
T Consensus       204 ~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~  252 (372)
T 3un9_A          204 AAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELS  252 (372)
T ss_dssp             HHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred             HHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCC
Confidence            4556677788888888888874    23344556688888888888774

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.73  E-value=8.1e-09  Score=80.11  Aligned_cols=87  Identities=26%  Similarity=0.292  Sum_probs=63.4

Q ss_pred             cCCCCCccE--EEecCCCCCcccCCcc----ccCCCCCCEeecCCCcccc--cCchhhccCcccceeecccCccCCCCcc
Q 046655          104 FSCFPNLKS--FKIHSNYLLSGSIPSE----IAAVSMLQTLELPSSSLTG--IIPLEMGRLRNLVHLDLSDNYLSGYIPP  175 (194)
Q Consensus       104 ~~~l~~L~~--L~l~~n~~l~~~~p~~----~~~l~~L~~L~L~~n~l~~--~~p~~~~~l~~L~~L~L~~N~l~g~~p~  175 (194)
                      +...+.|+.  ++++.| ... .++..    ...+++|+.|+|++|++++  .+|..+..+++|+.|+|++|++++.  .
T Consensus       137 l~~dp~L~~~~l~l~~N-~~~-~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~  212 (267)
T 3rw6_A          137 LRSDPDLVAQNIDVVLN-RRS-CMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--R  212 (267)
T ss_dssp             GGGCHHHHHTTCCCCTT-SHH-HHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--G
T ss_pred             cCCCcchhhcCccccCC-HHH-HHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--h
Confidence            444455555  666777 422 22221    2457899999999999997  4567788999999999999999964  3


Q ss_pred             ccCCCC--CCCeEeccCCcCC
Q 046655          176 TLGRLS--KLEILNLSSNDLY  194 (194)
Q Consensus       176 ~~~~l~--~L~~L~ls~N~ls  194 (194)
                      .+..+.  +|++|++++|+++
T Consensus       213 ~l~~l~~l~L~~L~L~~Npl~  233 (267)
T 3rw6_A          213 ELDKIKGLKLEELWLDGNSLC  233 (267)
T ss_dssp             GGGGGTTSCCSEEECTTSTTG
T ss_pred             hhhhcccCCcceEEccCCcCc
Confidence            344444  9999999999873

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.70  E-value=3.5e-08  Score=78.42  Aligned_cols=103  Identities=20%  Similarity=0.137  Sum_probs=86.5

Q ss_pred             eeeeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCC-EeecCCCcccccCchhhccCcccc
Q 046655           82 VIGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQ-TLELPSSSLTGIIPLEMGRLRNLV  160 (194)
Q Consensus        82 ~~~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~-~L~L~~n~l~~~~p~~~~~l~~L~  160 (194)
                      ..+|+.+++++|+++ .++...|..+++|+.+++..|  ++..-+..|.++.+|+ .+++.+ .+...-+..|.++++|+
T Consensus       225 ~~~L~~l~L~~n~i~-~I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~  300 (329)
T 3sb4_A          225 MPNLVSLDISKTNAT-TIPDFTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLR  300 (329)
T ss_dssp             CTTCCEEECTTBCCC-EECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEE
T ss_pred             cCCCeEEECCCCCcc-eecHhhhhCCCCCCEEECCcc--cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCC
Confidence            356777888999998 898788999999999999998  5545667799999999 999988 77755567899999999


Q ss_pred             eeecccCccCCCCccccCCCCCCCeEec
Q 046655          161 HLDLSDNYLSGYIPPTLGRLSKLEILNL  188 (194)
Q Consensus       161 ~L~L~~N~l~g~~p~~~~~l~~L~~L~l  188 (194)
                      .+++++|+++..-+..|.++++|+.++.
T Consensus       301 ~l~l~~n~i~~I~~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          301 YVLATGDKITTLGDELFGNGVPSKLIYK  328 (329)
T ss_dssp             EEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred             EEEeCCCccCccchhhhcCCcchhhhcc
Confidence            9999999999655667999999998874

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.67  E-value=1.5e-09  Score=88.18  Aligned_cols=111  Identities=17%  Similarity=0.175  Sum_probs=80.9

Q ss_pred             eeeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccc-----cCCCCCCEeecCCCccccc----Cchhh
Q 046655           83 IGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEI-----AAVSMLQTLELPSSSLTGI----IPLEM  153 (194)
Q Consensus        83 ~~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~-----~~l~~L~~L~L~~n~l~~~----~p~~~  153 (194)
                      ..|+.+++++|++...-...-...+++|++|++++| .+...-...+     ...++|++|+|++|.++..    ++..+
T Consensus       101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n-~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L  179 (372)
T 3un9_A          101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLN-SLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGL  179 (372)
T ss_dssp             SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSS-CCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHH
T ss_pred             CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCC-CCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHH
Confidence            567788889998874322111224568999999999 7764322333     2357899999999999742    44455


Q ss_pred             ccCcccceeecccCccCC----CCccccCCCCCCCeEeccCCcCC
Q 046655          154 GRLRNLVHLDLSDNYLSG----YIPPTLGRLSKLEILNLSSNDLY  194 (194)
Q Consensus       154 ~~l~~L~~L~L~~N~l~g----~~p~~~~~l~~L~~L~ls~N~ls  194 (194)
                      ...++|++|+|++|.++.    .++..+...++|+.|++++|.|+
T Consensus       180 ~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~  224 (372)
T 3un9_A          180 AGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAG  224 (372)
T ss_dssp             HTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCC
T ss_pred             hcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCC
Confidence            778999999999999884    23556777889999999999874

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.57  E-value=2.2e-07  Score=73.82  Aligned_cols=84  Identities=18%  Similarity=0.182  Sum_probs=59.1

Q ss_pred             CCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchhhccCcccc-eeecccCccCCCCccccCCCCCCCe
Q 046655          107 FPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLV-HLDLSDNYLSGYIPPTLGRLSKLEI  185 (194)
Q Consensus       107 l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~-~L~L~~N~l~g~~p~~~~~l~~L~~  185 (194)
                      ++.|+++++++| .++..-+..|.++++|+.+++.+| +...-+..|.++++|+ .+++.+ +++..-+..|..+++|+.
T Consensus       225 ~~~L~~l~L~~n-~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~  301 (329)
T 3sb4_A          225 MPNLVSLDISKT-NATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRY  301 (329)
T ss_dssp             CTTCCEEECTTB-CCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEE
T ss_pred             cCCCeEEECCCC-CcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCE
Confidence            456777777777 666555556777778888888777 6534445577788887 888776 566444566788888888


Q ss_pred             EeccCCcC
Q 046655          186 LNLSSNDL  193 (194)
Q Consensus       186 L~ls~N~l  193 (194)
                      ++++.|.+
T Consensus       302 l~l~~n~i  309 (329)
T 3sb4_A          302 VLATGDKI  309 (329)
T ss_dssp             EEECSSCC
T ss_pred             EEeCCCcc
Confidence            88877765

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=98.51  E-value=7.8e-09  Score=87.97  Aligned_cols=91  Identities=15%  Similarity=0.038  Sum_probs=58.9

Q ss_pred             cCCCCCccEEEecCCC-CCcccCCcccc-CCCCCCEeecCCCcccc-cCchhhccCcccceeecccCccCCC-CccccCC
Q 046655          104 FSCFPNLKSFKIHSNY-LLSGSIPSEIA-AVSMLQTLELPSSSLTG-IIPLEMGRLRNLVHLDLSDNYLSGY-IPPTLGR  179 (194)
Q Consensus       104 ~~~l~~L~~L~l~~n~-~l~~~~p~~~~-~l~~L~~L~L~~n~l~~-~~p~~~~~l~~L~~L~L~~N~l~g~-~p~~~~~  179 (194)
                      +..+++|++|+++.+. .+++.....+. .+++|++|++++|++++ .++..+..+++|+.|++++|.+++. ++..+..
T Consensus       432 ~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~  511 (592)
T 3ogk_B          432 LIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTK  511 (592)
T ss_dssp             HHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHH
T ss_pred             HHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHh
Confidence            3446667777775431 13322222232 36778888888888775 3445567788888888888887643 3444557


Q ss_pred             CCCCCeEeccCCcCC
Q 046655          180 LSKLEILNLSSNDLY  194 (194)
Q Consensus       180 l~~L~~L~ls~N~ls  194 (194)
                      +++|++|++++|+++
T Consensus       512 l~~L~~L~ls~n~it  526 (592)
T 3ogk_B          512 LPSLRYLWVQGYRAS  526 (592)
T ss_dssp             CSSCCEEEEESCBCC
T ss_pred             cCccCeeECcCCcCC
Confidence            788888888888764

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.48  E-value=1.8e-08  Score=73.86  Aligned_cols=110  Identities=15%  Similarity=0.138  Sum_probs=80.4

Q ss_pred             eeeeeeeeccCC-cccc----ccCccccCCCCCccEEEecCCCCCccc----CCccccCCCCCCEeecCCCccccc----
Q 046655           82 VIGVSLLWYEND-NITG----ELGRFKFSCFPNLKSFKIHSNYLLSGS----IPSEIAAVSMLQTLELPSSSLTGI----  148 (194)
Q Consensus        82 ~~~l~~l~l~~n-~l~~----~lp~~~~~~l~~L~~L~l~~n~~l~~~----~p~~~~~l~~L~~L~L~~n~l~~~----  148 (194)
                      -..|+.+++++| .+..    .+. ..+...+.|++|++++| .+...    +...+...++|++|+|++|.+.+.    
T Consensus        35 ~~~L~~L~L~~n~~i~~~g~~~l~-~~L~~~~~L~~L~Ls~n-~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~  112 (185)
T 1io0_A           35 DPDLEEVNLNNIMNIPVPTLKACA-EALKTNTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA  112 (185)
T ss_dssp             CTTCCEEECTTCTTCCHHHHHHHH-HHHTTCCSCCEEECTTS-CCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred             CCCCCEEEecCCCCCCHHHHHHHH-HHHHhCCCcCEEECcCC-CCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHH
Confidence            445666777888 7763    233 44566789999999999 66531    233445568899999999999854    


Q ss_pred             CchhhccCcccceeec--ccCccCCC----CccccCCCCCCCeEeccCCcC
Q 046655          149 IPLEMGRLRNLVHLDL--SDNYLSGY----IPPTLGRLSKLEILNLSSNDL  193 (194)
Q Consensus       149 ~p~~~~~l~~L~~L~L--~~N~l~g~----~p~~~~~l~~L~~L~ls~N~l  193 (194)
                      +...+...+.|++|++  ++|.+...    +...+...++|++|++++|.+
T Consensus       113 l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i  163 (185)
T 1io0_A          113 LVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ  163 (185)
T ss_dssp             HHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred             HHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence            3455677789999999  88999842    334556678999999999975

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=98.47  E-value=3.3e-08  Score=84.13  Aligned_cols=57  Identities=7%  Similarity=-0.019  Sum_probs=25.8

Q ss_pred             CCCCccEEEecCCCCCc----ccCCccccCCCCCCEeecCCCcccccCchhhccCcccceeec
Q 046655          106 CFPNLKSFKIHSNYLLS----GSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDL  164 (194)
Q Consensus       106 ~l~~L~~L~l~~n~~l~----~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L  164 (194)
                      .+++|++|++++| .++    +.++..+..+++|+.|++++|.+.+ +|..+..+++|+.+++
T Consensus       190 ~~~~L~~L~L~~n-~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l  250 (592)
T 3ogk_B          190 HNTSLEVLNFYMT-EFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCG  250 (592)
T ss_dssp             HCCCCCEEECTTC-CCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEE
T ss_pred             cCCCccEEEeecc-CCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcc
Confidence            3455555555555 443    1222233345555555555555542 3333333444444433

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.13  E-value=1.1e-06  Score=64.26  Aligned_cols=93  Identities=13%  Similarity=0.160  Sum_probs=69.8

Q ss_pred             cccCCCCCccEEEecCCCCCcc----cCCccccCCCCCCEeecCCCccccc----CchhhccCcccceeecccCccCCC-
Q 046655          102 FKFSCFPNLKSFKIHSNYLLSG----SIPSEIAAVSMLQTLELPSSSLTGI----IPLEMGRLRNLVHLDLSDNYLSGY-  172 (194)
Q Consensus       102 ~~~~~l~~L~~L~l~~n~~l~~----~~p~~~~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~L~~N~l~g~-  172 (194)
                      ..+...+.|++|++++|..+..    .+...+...++|++|+|++|.+...    +...+...+.|++|+|++|.+... 
T Consensus        30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g  109 (185)
T 1io0_A           30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSG  109 (185)
T ss_dssp             HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHH
T ss_pred             HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHH
Confidence            4566788999999999822321    1234455678999999999999753    334456668999999999999842 


Q ss_pred             ---CccccCCCCCCCeEec--cCCcCC
Q 046655          173 ---IPPTLGRLSKLEILNL--SSNDLY  194 (194)
Q Consensus       173 ---~p~~~~~l~~L~~L~l--s~N~ls  194 (194)
                         +...+...++|++|++  ++|.|+
T Consensus       110 ~~~l~~~L~~n~~L~~L~L~~~~N~i~  136 (185)
T 1io0_A          110 ILALVEALQSNTSLIELRIDNQSQPLG  136 (185)
T ss_dssp             HHHHHHGGGGCSSCCEEECCCCSSCCC
T ss_pred             HHHHHHHHHhCCCceEEEecCCCCCCC
Confidence               4556778889999999  889874

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.10  E-value=5.6e-07  Score=72.78  Aligned_cols=89  Identities=16%  Similarity=0.178  Sum_probs=59.0

Q ss_pred             CCCCccEEEecCCC-CCccc-----CCccc--cCCCCCCEeecCCCcccccCchhhc---cCcccceeecccCccCCC--
Q 046655          106 CFPNLKSFKIHSNY-LLSGS-----IPSEI--AAVSMLQTLELPSSSLTGIIPLEMG---RLRNLVHLDLSDNYLSGY--  172 (194)
Q Consensus       106 ~l~~L~~L~l~~n~-~l~~~-----~p~~~--~~l~~L~~L~L~~n~l~~~~p~~~~---~l~~L~~L~L~~N~l~g~--  172 (194)
                      .+++|++|+|+.+. ...+.     +...+  ..+++|+.|+|.+|.+.+..+..+.   .+++|+.|+|+.|.+++.  
T Consensus       217 ~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~  296 (362)
T 2ra8_A          217 DLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGA  296 (362)
T ss_dssp             BCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHH
T ss_pred             cCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHH
Confidence            57888888875320 11111     11122  2468899999998888754444443   478899999999988852  


Q ss_pred             --CccccCCCCCCCeEeccCCcCC
Q 046655          173 --IPPTLGRLSKLEILNLSSNDLY  194 (194)
Q Consensus       173 --~p~~~~~l~~L~~L~ls~N~ls  194 (194)
                        ++..+.++++|+.|++++|.|+
T Consensus       297 ~~L~~~L~~l~~L~~L~L~~n~i~  320 (362)
T 2ra8_A          297 RLLLDHVDKIKHLKFINMKYNYLS  320 (362)
T ss_dssp             HHHHTTHHHHTTCSEEECCSBBCC
T ss_pred             HHHHhhcccCCcceEEECCCCcCC
Confidence              3444456789999999998874

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=98.08  E-value=1.7e-07  Score=79.66  Aligned_cols=62  Identities=13%  Similarity=0.124  Sum_probs=36.9

Q ss_pred             CCCCCEeecCCCcccccCchhh-ccCcccceeecccCccCCCCcc-ccCCCCCCCeEeccCCcC
Q 046655          132 VSMLQTLELPSSSLTGIIPLEM-GRLRNLVHLDLSDNYLSGYIPP-TLGRLSKLEILNLSSNDL  193 (194)
Q Consensus       132 l~~L~~L~L~~n~l~~~~p~~~-~~l~~L~~L~L~~N~l~g~~p~-~~~~l~~L~~L~ls~N~l  193 (194)
                      +++|+.|++++|.+++..+..+ ..+++|+.|++++|.+++.... ....+++|+.|++++|++
T Consensus       455 ~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~  518 (594)
T 2p1m_B          455 AKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV  518 (594)
T ss_dssp             CTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred             chhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence            5666666666666654433333 4567777777777776532222 234466777777777654

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=98.04  E-value=5.7e-07  Score=76.38  Aligned_cols=107  Identities=19%  Similarity=0.153  Sum_probs=57.9

Q ss_pred             eeeeeeccCCccccccCccccC-CCCCccEEEecCCCCCccc-CCccccCCCCCCEeecCCCcccccCchhhc----cCc
Q 046655           84 GVSLLWYENDNITGELGRFKFS-CFPNLKSFKIHSNYLLSGS-IPSEIAAVSMLQTLELPSSSLTGIIPLEMG----RLR  157 (194)
Q Consensus        84 ~l~~l~l~~n~l~~~lp~~~~~-~l~~L~~L~l~~n~~l~~~-~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~----~l~  157 (194)
                      .|+.+++++|.+++..+ ..+. .+++|++|++++|..+... ++..+..+++|++|++++|.+++..+..+.    .++
T Consensus       106 ~L~~L~L~~~~~~~~~~-~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~  184 (594)
T 2p1m_B          106 WLEEIRLKRMVVTDDCL-ELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYT  184 (594)
T ss_dssp             TCCEEEEESCBCCHHHH-HHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCC
T ss_pred             CCCeEEeeCcEEcHHHH-HHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCC
Confidence            45556667766664444 3333 4667777777776322211 233334567777777777776654443333    445


Q ss_pred             ccceeecccCc--cCC-CCccccCCCCCCCeEeccCC
Q 046655          158 NLVHLDLSDNY--LSG-YIPPTLGRLSKLEILNLSSN  191 (194)
Q Consensus       158 ~L~~L~L~~N~--l~g-~~p~~~~~l~~L~~L~ls~N  191 (194)
                      +|+.|++++|.  ++. .++..+.++++|++|++++|
T Consensus       185 ~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~  221 (594)
T 2p1m_B          185 SLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRA  221 (594)
T ss_dssp             CCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTT
T ss_pred             cCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCC
Confidence            67777777665  211 11111234566777777665

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=97.96  E-value=2.9e-05  Score=63.44  Aligned_cols=96  Identities=14%  Similarity=0.206  Sum_probs=60.9

Q ss_pred             CccccccCccccCCCCCccEEEecCCCCCc-----ccCCccccCCCCCCEeecCCCcccccCchhhccCcccceeecccC
Q 046655           93 DNITGELGRFKFSCFPNLKSFKIHSNYLLS-----GSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLSDN  167 (194)
Q Consensus        93 n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~-----~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N  167 (194)
                      +++. .++...|..+++|+.+++.+| ...     ..-+..|.++++|+.+.+.. .+...-...|.++.+|+.+.+..|
T Consensus       257 ~~i~-~I~~~aF~~c~~L~~l~l~~~-~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~  333 (401)
T 4fdw_A          257 NGVT-NIASRAFYYCPELAEVTTYGS-TFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN  333 (401)
T ss_dssp             TTCC-EECTTTTTTCTTCCEEEEESS-CCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT
T ss_pred             CCcc-EEChhHhhCCCCCCEEEeCCc-cccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc
Confidence            3444 555566777778888887776 433     23345677777788777773 455333455777777777777544


Q ss_pred             ccCCCCccccCCCCCCCeEeccCCcC
Q 046655          168 YLSGYIPPTLGRLSKLEILNLSSNDL  193 (194)
Q Consensus       168 ~l~g~~p~~~~~l~~L~~L~ls~N~l  193 (194)
                       ++..-+..|..+ +|+.+++.+|.+
T Consensus       334 -l~~I~~~aF~~~-~L~~l~l~~n~~  357 (401)
T 4fdw_A          334 -VTQINFSAFNNT-GIKEVKVEGTTP  357 (401)
T ss_dssp             -CCEECTTSSSSS-CCCEEEECCSSC
T ss_pred             -ccEEcHHhCCCC-CCCEEEEcCCCC
Confidence             553334557777 777777777653

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.95  E-value=5.2e-06  Score=60.23  Aligned_cols=83  Identities=13%  Similarity=0.093  Sum_probs=36.1

Q ss_pred             eeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCC----CCCCEeecCCCc-ccccCchhhccCcc
Q 046655           84 GVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAV----SMLQTLELPSSS-LTGIIPLEMGRLRN  158 (194)
Q Consensus        84 ~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l----~~L~~L~L~~n~-l~~~~p~~~~~l~~  158 (194)
                      .|+.++++++.++..-- ..+..+++|++|+|++|..++..--..++.+    ++|++|+|+++. +++.--..+..+++
T Consensus        62 ~L~~LDLs~~~Itd~GL-~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~  140 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGF-DHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN  140 (176)
T ss_dssp             CEEEEEEESCCCCGGGG-GGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred             eEeEEeCcCCCccHHHH-HHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence            34445555555442211 2344555555555555533332111122222    245555555542 44322223444555


Q ss_pred             cceeecccC
Q 046655          159 LVHLDLSDN  167 (194)
Q Consensus       159 L~~L~L~~N  167 (194)
                      |+.|++++.
T Consensus       141 L~~L~L~~c  149 (176)
T 3e4g_A          141 LKYLFLSDL  149 (176)
T ss_dssp             CCEEEEESC
T ss_pred             CCEEECCCC
Confidence            555555544

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=97.72  E-value=0.00015  Score=59.15  Aligned_cols=108  Identities=16%  Similarity=0.146  Sum_probs=55.9

Q ss_pred             CCCCeeeeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCC--------------
Q 046655           78 SAGSVIGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSS--------------  143 (194)
Q Consensus        78 ~~~~~~~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n--------------  143 (194)
                      ++....+|+.+.+.+|+++ .++...|. ...|+.+.+..+  ++..-...|.++++|+.+++..|              
T Consensus       175 aF~~c~~L~~l~l~~n~l~-~I~~~aF~-~~~L~~l~lp~~--l~~I~~~aF~~~~~L~~l~l~~~l~~I~~~aF~~~~L  250 (401)
T 4fdw_A          175 IFYYCYNLKKADLSKTKIT-KLPASTFV-YAGIEEVLLPVT--LKEIGSQAFLKTSQLKTIEIPENVSTIGQEAFRESGI  250 (401)
T ss_dssp             TTTTCTTCCEEECTTSCCS-EECTTTTT-TCCCSEEECCTT--CCEECTTTTTTCTTCCCEECCTTCCEECTTTTTTCCC
T ss_pred             HhhCcccCCeeecCCCcce-EechhhEe-ecccCEEEeCCc--hheehhhHhhCCCCCCEEecCCCccCccccccccCCc
Confidence            3444455555666666555 55544443 355555555533  33333445556666666666543              


Q ss_pred             -------cccccCchhhccCcccceeecccCccC-----CCCccccCCCCCCCeEecc
Q 046655          144 -------SLTGIIPLEMGRLRNLVHLDLSDNYLS-----GYIPPTLGRLSKLEILNLS  189 (194)
Q Consensus       144 -------~l~~~~p~~~~~l~~L~~L~L~~N~l~-----g~~p~~~~~l~~L~~L~ls  189 (194)
                             .+...-...|.++++|+.+++.+|.+.     ..-+..|..+++|+.+++.
T Consensus       251 ~~i~lp~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~  308 (401)
T 4fdw_A          251 TTVKLPNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP  308 (401)
T ss_dssp             SEEEEETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC
T ss_pred             cEEEeCCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC
Confidence                   122112334556666666666665543     1223446666666666665

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.60  E-value=2.3e-05  Score=56.84  Aligned_cols=84  Identities=8%  Similarity=0.115  Sum_probs=62.3

Q ss_pred             CCccEEEecCCCCCcccCCccccCCCCCCEeecCCCc-ccccCchhhccC----cccceeecccC-ccCCCCccccCCCC
Q 046655          108 PNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSS-LTGIIPLEMGRL----RNLVHLDLSDN-YLSGYIPPTLGRLS  181 (194)
Q Consensus       108 ~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~-l~~~~p~~~~~l----~~L~~L~L~~N-~l~g~~p~~~~~l~  181 (194)
                      ..|++||++++ .++..--..+..+++|+.|+|+++. +++.--..+..+    ++|++|+++++ +++..=-..+.+++
T Consensus        61 ~~L~~LDLs~~-~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~  139 (176)
T 3e4g_A           61 YKIQAIDATDS-CIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFR  139 (176)
T ss_dssp             CCEEEEEEESC-CCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCT
T ss_pred             ceEeEEeCcCC-CccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCC
Confidence            46999999999 6664433556789999999999985 664433445553    47999999997 47732223467899


Q ss_pred             CCCeEeccCCc
Q 046655          182 KLEILNLSSND  192 (194)
Q Consensus       182 ~L~~L~ls~N~  192 (194)
                      +|++|++++++
T Consensus       140 ~L~~L~L~~c~  150 (176)
T 3e4g_A          140 NLKYLFLSDLP  150 (176)
T ss_dssp             TCCEEEEESCT
T ss_pred             CCCEEECCCCC
Confidence            99999999864

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.55  E-value=0.0001  Score=50.61  Aligned_cols=57  Identities=21%  Similarity=0.199  Sum_probs=39.2

Q ss_pred             cEEEecCCCCCc-ccCCccccCCCCCCEeecCCCcccccCchhhccCcccceeecccCccC
Q 046655          111 KSFKIHSNYLLS-GSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLSDNYLS  170 (194)
Q Consensus       111 ~~L~l~~n~~l~-~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~  170 (194)
                      ..++.+++ .++ ..+|..+.  .+|++|+|++|+++..-+..|..+++|+.|+|.+|.+.
T Consensus        11 ~~v~Cs~~-~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           11 TLVDCGRR-GLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             TEEECCSS-CCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             CEEEeCCC-CCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            36677777 665 24565432  46888888888888444455777888888888888765

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=97.53  E-value=2.7e-05  Score=62.83  Aligned_cols=38  Identities=24%  Similarity=0.318  Sum_probs=20.6

Q ss_pred             CcccceeecccCccCCCCcccc---CCCCCCCeEeccCCcC
Q 046655          156 LRNLVHLDLSDNYLSGYIPPTL---GRLSKLEILNLSSNDL  193 (194)
Q Consensus       156 l~~L~~L~L~~N~l~g~~p~~~---~~l~~L~~L~ls~N~l  193 (194)
                      +++|++|++.+|.+....+..+   ..+++|++|+|+.|.+
T Consensus       251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L  291 (362)
T 2ra8_A          251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVL  291 (362)
T ss_dssp             CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCC
T ss_pred             CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCC
Confidence            4566666666665553222221   2356667777766654

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.21  E-value=0.00078  Score=46.16  Aligned_cols=54  Identities=19%  Similarity=0.189  Sum_probs=40.2

Q ss_pred             eccCCccc-cccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCccc
Q 046655           89 WYENDNIT-GELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLT  146 (194)
Q Consensus        89 ~l~~n~l~-~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~  146 (194)
                      +-++++++ ..+| ..+  .+.+++|+|++| .++..-+..|..+++|++|+|.+|.+.
T Consensus        14 ~Cs~~~L~~~~vP-~~l--p~~l~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           14 DCGRRGLTWASLP-TAF--PVDTTELVLTGN-NLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             ECCSSCCCTTTSC-SCC--CTTCSEEECTTS-CCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             EeCCCCCccccCC-CCC--CcCCCEEECCCC-cCCccChhhhhhccccCEEEecCCCee
Confidence            33555554 3566 222  246999999999 888665667889999999999999885

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=96.97  E-value=0.0037  Score=50.03  Aligned_cols=90  Identities=13%  Similarity=0.143  Sum_probs=56.2

Q ss_pred             ccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchhhccCcccceeecccCccCCCCcccc
Q 046655           98 ELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLSDNYLSGYIPPTL  177 (194)
Q Consensus        98 ~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~  177 (194)
                      .++...|.....|+.+.+..+  +...-...|.++.+|+.+.+..+.+...-...|.++.+|+.+.+..+ ++..-...|
T Consensus       253 ~I~~~aF~~~~~l~~i~l~~~--i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF  329 (379)
T 4h09_A          253 SIGSFLLQNCTALKTLNFYAK--VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAF  329 (379)
T ss_dssp             EECTTTTTTCTTCCEEEECCC--CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTT
T ss_pred             EeCccccceeehhcccccccc--ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHh
Confidence            444455666677777777654  33233445677778888887777776333456777778888777643 442223457


Q ss_pred             CCCCCCCeEeccC
Q 046655          178 GRLSKLEILNLSS  190 (194)
Q Consensus       178 ~~l~~L~~L~ls~  190 (194)
                      .++++|+.+.+..
T Consensus       330 ~~C~~L~~i~ip~  342 (379)
T 4h09_A          330 KNCKALSTISYPK  342 (379)
T ss_dssp             TTCTTCCCCCCCT
T ss_pred             hCCCCCCEEEECC
Confidence            7777777776654

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=96.96  E-value=0.0021  Score=51.97  Aligned_cols=89  Identities=16%  Similarity=0.287  Sum_probs=45.2

Q ss_pred             cCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchhhccCcccceeecccCccCCCCccccC
Q 046655           99 LGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLSDNYLSGYIPPTLG  178 (194)
Q Consensus        99 lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~  178 (194)
                      ++...|..++.|+.+.+..+  ++..-...|.++.+|+.+.+..+ +...-...|.++.+|+.+.+..+ ++..-...|.
T Consensus       279 I~~~aF~~c~~L~~i~l~~~--i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~  354 (394)
T 4gt6_A          279 IGTGAFMNCPALQDIEFSSR--ITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFS  354 (394)
T ss_dssp             ECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGT
T ss_pred             ecCcccccccccccccCCCc--ccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhh
Confidence            33344555666666666433  33233344556666666666543 33222234556666666666433 4422233456


Q ss_pred             CCCCCCeEeccCC
Q 046655          179 RLSKLEILNLSSN  191 (194)
Q Consensus       179 ~l~~L~~L~ls~N  191 (194)
                      ++++|+.+++.+|
T Consensus       355 ~C~~L~~i~~~~~  367 (394)
T 4gt6_A          355 NCTALNNIEYSGS  367 (394)
T ss_dssp             TCTTCCEEEESSC
T ss_pred             CCCCCCEEEECCc
Confidence            6666666665544

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=96.80  E-value=0.0067  Score=48.95  Aligned_cols=93  Identities=23%  Similarity=0.271  Sum_probs=56.3

Q ss_pred             ccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchhhccCcccceeecccCccCCCC
Q 046655           94 NITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLSDNYLSGYI  173 (194)
Q Consensus        94 ~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~g~~  173 (194)
                      .+. .++...|..+.+|+.+++..+  ++..-...|.++.+|+.+.+..+ +...-...|.++.+|+.+++.++...   
T Consensus       298 ~i~-~I~~~aF~~c~~L~~i~lp~~--v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~---  370 (394)
T 4gt6_A          298 RIT-ELPESVFAGCISLKSIDIPEG--ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQ---  370 (394)
T ss_dssp             TCC-EECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHH---
T ss_pred             ccc-ccCceeecCCCCcCEEEeCCc--ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceee---
Confidence            344 566567777888888888765  44344566788888888888654 54233356888888888888877544   


Q ss_pred             ccccCCCCCCCeEeccCCcC
Q 046655          174 PPTLGRLSKLEILNLSSNDL  193 (194)
Q Consensus       174 p~~~~~l~~L~~L~ls~N~l  193 (194)
                      -..+....+|+.+.+..|.+
T Consensus       371 ~~~~~~~~~L~~i~i~~~~~  390 (394)
T 4gt6_A          371 WNAISTDSGLQNLPVAPGSI  390 (394)
T ss_dssp             HHTCBCCCCC----------
T ss_pred             hhhhhccCCCCEEEeCCCCE
Confidence            13466677788887776643

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=96.76  E-value=0.0044  Score=50.05  Aligned_cols=88  Identities=13%  Similarity=0.113  Sum_probs=62.3

Q ss_pred             CccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchhhccCcccceeecccCccCCCCccccCC
Q 046655          100 GRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLSDNYLSGYIPPTLGR  179 (194)
Q Consensus       100 p~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~  179 (194)
                      +...+..+..|+.+.+..+  ++..-...|.++.+|+.+++..+ +...-...|.++.+|+.+++..| ++..-...|.+
T Consensus       289 ~~~~F~~~~~L~~i~l~~~--i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~  364 (394)
T 4fs7_A          289 PEKTFYGCSSLTEVKLLDS--VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQG  364 (394)
T ss_dssp             CTTTTTTCTTCCEEEECTT--CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTT
T ss_pred             ccccccccccccccccccc--cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhC
Confidence            3345666778888888765  44334566888889999988754 55333456888999999998766 65333456888


Q ss_pred             CCCCCeEeccCC
Q 046655          180 LSKLEILNLSSN  191 (194)
Q Consensus       180 l~~L~~L~ls~N  191 (194)
                      +++|+.+++..+
T Consensus       365 C~~L~~i~lp~~  376 (394)
T 4fs7_A          365 CINLKKVELPKR  376 (394)
T ss_dssp             CTTCCEEEEEGG
T ss_pred             CCCCCEEEECCC
Confidence            999999988654

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=96.61  E-value=0.0038  Score=50.40  Aligned_cols=86  Identities=16%  Similarity=0.182  Sum_probs=66.0

Q ss_pred             cccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchhhccCcccceeecccCccCCCCc
Q 046655           95 ITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLSDNYLSGYIP  174 (194)
Q Consensus        95 l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~g~~p  174 (194)
                      +. .++...|..+.+|+.+++..+  ++..-...|.++.+|+.+.+..+ +...-...|.++.+|+.+++..+ ++ .+.
T Consensus       308 i~-~I~~~aF~~c~~L~~i~lp~~--v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~-~~~  381 (394)
T 4fs7_A          308 VK-FIGEEAFESCTSLVSIDLPYL--VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LE-QYR  381 (394)
T ss_dssp             CC-EECTTTTTTCTTCCEECCCTT--CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GG-GGG
T ss_pred             cc-eechhhhcCCCCCCEEEeCCc--ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CE-Ehh
Confidence            45 676677889999999999765  55444677899999999999877 65344567999999999999765 34 345


Q ss_pred             cccCCCCCCCeE
Q 046655          175 PTLGRLSKLEIL  186 (194)
Q Consensus       175 ~~~~~l~~L~~L  186 (194)
                      ..|.++++|+.+
T Consensus       382 ~~F~~c~~L~~I  393 (394)
T 4fs7_A          382 YDFEDTTKFKWI  393 (394)
T ss_dssp             GGBCTTCEEEEE
T ss_pred             heecCCCCCcEE
Confidence            578888888765

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=96.25  E-value=0.0025  Score=46.87  Aligned_cols=107  Identities=13%  Similarity=0.084  Sum_probs=63.9

Q ss_pred             eeeeeeccCC-cccc----ccCccccCCCCCccEEEecCCCCCccc----CCccccCCCCCCEeecCCCccccc----Cc
Q 046655           84 GVSLLWYEND-NITG----ELGRFKFSCFPNLKSFKIHSNYLLSGS----IPSEIAAVSMLQTLELPSSSLTGI----IP  150 (194)
Q Consensus        84 ~l~~l~l~~n-~l~~----~lp~~~~~~l~~L~~L~l~~n~~l~~~----~p~~~~~l~~L~~L~L~~n~l~~~----~p  150 (194)
                      .|..+++++| +|..    .+- +.+..-+.|++|+|++| .+...    +.+.+..=+.|+.|+|++|.|.+.    +-
T Consensus        42 ~L~~L~L~~nn~igd~ga~~la-~aL~~N~~L~~L~L~~n-~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala  119 (197)
T 1pgv_A           42 DLKEVNINNMKRVSKERIRSLI-EAACNSKHIEKFSLANT-AISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL  119 (197)
T ss_dssp             SCCEEECTTCCSSCHHHHHHHH-HHHTTCSCCCEEECTTS-CCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred             CccEEECCCCCCCCHHHHHHHH-HHHhhCCCcCEEEccCC-CCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHH
Confidence            3444566764 5542    122 34555677889999888 65422    112222346789999999988743    22


Q ss_pred             hhhccCcccceeecccCcc---CC----CCccccCCCCCCCeEeccCCc
Q 046655          151 LEMGRLRNLVHLDLSDNYL---SG----YIPPTLGRLSKLEILNLSSND  192 (194)
Q Consensus       151 ~~~~~l~~L~~L~L~~N~l---~g----~~p~~~~~l~~L~~L~ls~N~  192 (194)
                      +.+..-+.|+.|+|++|..   ..    .+-+.+..-+.|+.|+++.|.
T Consensus       120 ~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~  168 (197)
T 1pgv_A          120 RSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS  168 (197)
T ss_dssp             HHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             HHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence            2344456788888876533   31    133345556788888887764

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=95.84  E-value=0.04  Score=43.96  Aligned_cols=90  Identities=18%  Similarity=0.193  Sum_probs=63.9

Q ss_pred             cCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchhhccCcccceeecccCccCCCCccccC
Q 046655           99 LGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLSDNYLSGYIPPTLG  178 (194)
Q Consensus        99 lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~  178 (194)
                      ++...+.....|+.+.+..+  ++..-...|..+.+|+.+.+..+ +...-...|.++.+|+.+.+.++.++..-...|.
T Consensus       231 i~~~~f~~~~~L~~i~lp~~--v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~  307 (379)
T 4h09_A          231 LGDGAFYGMKALDEIAIPKN--VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFM  307 (379)
T ss_dssp             ECTTTTTTCSSCCEEEECTT--CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTT
T ss_pred             EccccccCCccceEEEcCCC--ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhc
Confidence            33345666777888877665  33334556777888888888654 4423335688999999999998888844455688


Q ss_pred             CCCCCCeEeccCC
Q 046655          179 RLSKLEILNLSSN  191 (194)
Q Consensus       179 ~l~~L~~L~ls~N  191 (194)
                      ++.+|+.+++..+
T Consensus       308 ~c~~L~~i~lp~~  320 (379)
T 4h09_A          308 DCVKLSSVTLPTA  320 (379)
T ss_dssp             TCTTCCEEECCTT
T ss_pred             CCCCCCEEEcCcc
Confidence            9999999998654

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=95.28  E-value=0.0096  Score=43.73  Aligned_cols=88  Identities=11%  Similarity=0.106  Sum_probs=62.1

Q ss_pred             cCCCCCccEEEecCCCCCcc----cCCccccCCCCCCEeecCCCccccc----CchhhccCcccceeecccCccCC----
Q 046655          104 FSCFPNLKSFKIHSNYLLSG----SIPSEIAAVSMLQTLELPSSSLTGI----IPLEMGRLRNLVHLDLSDNYLSG----  171 (194)
Q Consensus       104 ~~~l~~L~~L~l~~n~~l~~----~~p~~~~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~L~~N~l~g----  171 (194)
                      +..-+.|++|++++|..+..    .+-+.+..-+.|+.|+|++|.+.+.    +-+.+..-+.|+.|+|+.|.|..    
T Consensus        37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~  116 (197)
T 1pgv_A           37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA  116 (197)
T ss_dssp             HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred             HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence            44567899999998513321    1223344557899999999999843    22345556899999999999983    


Q ss_pred             CCccccCCCCCCCeEeccCC
Q 046655          172 YIPPTLGRLSKLEILNLSSN  191 (194)
Q Consensus       172 ~~p~~~~~l~~L~~L~ls~N  191 (194)
                      .+-+.+..-+.|++|+|++|
T Consensus       117 ala~aL~~N~tL~~L~L~n~  136 (197)
T 1pgv_A          117 RLLRSTLVTQSIVEFKADNQ  136 (197)
T ss_dssp             HHHHHTTTTCCCSEEECCCC
T ss_pred             HHHHHHhhCCceeEEECCCC
Confidence            23345667788999999865

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	194
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	3e-10
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-05
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-09
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-08
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	8e-05
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	6e-04
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-08
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-05
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	4e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	4e-08
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	4e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	4e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	4e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	4e-05
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	4e-05
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	0.001
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	5e-05
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	1e-04
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	8e-04
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	0.001
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	0.001
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	0.003
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	0.001
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	0.002
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	0.002

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 55.9 bits (133), Expect = 3e-10
 Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 1/61 (1%)

Query: 133 SMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLSDNYLSGYIPPTLGRLSKLEILNLSSND 192
             L  L+L ++ + G +P  + +L+ L  L++S N L G I P  G L + ++   ++N 
Sbjct: 244 KNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEI-PQGGNLQRFDVSAYANNK 302

Query: 193 L 193
            
Sbjct: 303 C 303

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 42.0 bits (97), Expect = 2e-05
 Identities = 39/156 (25%), Positives = 67/156 (42%), Gaps = 8/156 (5%)

Query: 45  EREALLA------TGWWVNNWATGNYTSYHCKWTGVSCNSAGSVIGVSLLWYENDNITGE 98
           +++ALL           +++W        +  W GV C++      V+ L     N+   
Sbjct: 7   DKQALLQIKKDLGNPTTLSSWLPTTDCC-NRTWLGVLCDTDTQTYRVNNLDLSGLNLPKP 65

Query: 99  LGRFK-FSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLR 157
                  +  P L    I     L G IP  IA ++ L  L +  ++++G IP  + +++
Sbjct: 66  YPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIK 125

Query: 158 NLVHLDLSDNYLSGYIPPTLGRLSKLEILNLSSNDL 193
            LV LD S N LSG +PP++  L  L  +    N +
Sbjct: 126 TLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRI 161

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 53.9 bits (128), Expect = 2e-09
 Identities = 22/126 (17%), Positives = 45/126 (35%), Gaps = 4/126 (3%)

Query: 68  HCKWTGVSCNSAGSVIGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPS 127
           +     ++ N   ++  +S L    +   G       S    L +              S
Sbjct: 242 NLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDIS 301

Query: 128 EIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLSDNYLSGYIPPTLGRLSKLEILN 187
            I+ +  L  L L  ++++ I P+    L  L  L  ++N +S     +L  L+ +  L+
Sbjct: 302 PISNLKNLTYLTLYFNNISDISPV--SSLTKLQRLFFANNKVSD--VSSLANLTNINWLS 357

Query: 188 LSSNDL 193
              N +
Sbjct: 358 AGHNQI 363

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 51.2 bits (121), Expect = 1e-08
 Identities = 20/90 (22%), Positives = 39/90 (43%), Gaps = 7/90 (7%)

Query: 102 FKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVH 161
              S   NL    ++ N + S   P  +++++ LQ L   ++ ++ +  L    L N+  
Sbjct: 301 SPISNLKNLTYLTLYFNNI-SDISP--VSSLTKLQRLFFANNKVSDVSSL--ANLTNINW 355

Query: 162 LDLSDNYLSGYIPPTLGRLSKLEILNLSSN 191
           L    N +S   P  L  L+++  L L+  
Sbjct: 356 LSAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.0 bits (92), Expect = 8e-05
 Identities = 27/80 (33%), Positives = 38/80 (47%), Gaps = 6/80 (7%)

Query: 115 IHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLSDNYLSGYIP 174
           I +N  +S   P  I  ++ L  L L  + L  I  L    L NL  LDL++N +S   P
Sbjct: 203 IATNNQISDITPLGI--LTNLDELSLNGNQLKDIGTL--ASLTNLTDLDLANNQISNLAP 258

Query: 175 PTLGRLSKLEILNLSSNDLY 194
             L  L+KL  L L +N + 
Sbjct: 259 --LSGLTKLTELKLGANQIS 276

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.3 bits (85), Expect = 6e-04
 Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 4/55 (7%)

Query: 135 LQTLELPSSSLTGIIPLEMGRLRNLVHLDLSDNYLSGYIPPTLGRLSKLEILNLS 189
           + TL+     +  I  +E   L NL  ++ S+N L+   P  L  L+KL  + ++
Sbjct: 46  VTTLQADRLGIKSIDGVE--YLNNLTQINFSNNQLTDITP--LKNLTKLVDILMN 96

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 50.0 bits (118), Expect = 3e-08
 Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 2/70 (2%)

Query: 124 SIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLSDNYLSGYIPPTLGRLSKL 183
            +P ++        L+L ++ +T I   +   L+NL  L L +N +S   P     L KL
Sbjct: 24  KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKL 81

Query: 184 EILNLSSNDL 193
           E L LS N L
Sbjct: 82  ERLYLSKNQL 91

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 42.3 bits (98), Expect = 1e-05
 Identities = 22/127 (17%), Positives = 38/127 (29%), Gaps = 19/127 (14%)

Query: 68  HCKWTGVSCNSAGSVIGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPS 127
            C    V C+  G                  L +      P+     + +N + +     
Sbjct: 9   QCHLRVVQCSDLG------------------LEKVPKDLPPDTALLDLQNNKI-TEIKDG 49

Query: 128 EIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLSDNYLSGYIPPTLGRLSKLEILN 187
           +   +  L TL L ++ ++ I P     L  L  L LS N L          L +L +  
Sbjct: 50  DFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHE 109

Query: 188 LSSNDLY 194
                + 
Sbjct: 110 NEITKVR 116

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 37.7 bits (86), Expect = 4e-04
 Identities = 22/103 (21%), Positives = 41/103 (39%), Gaps = 2/103 (1%)

Query: 89  WYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGI 148
              ++N   ++ +  F+    +   ++ +N L S     E  A   ++ L     + T I
Sbjct: 105 LRVHENEITKVRKSVFNGLNQMIVVELGTNPLKS--SGIENGAFQGMKKLSYIRIADTNI 162

Query: 149 IPLEMGRLRNLVHLDLSDNYLSGYIPPTLGRLSKLEILNLSSN 191
             +  G   +L  L L  N ++     +L  L+ L  L LS N
Sbjct: 163 TTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFN 205

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 49.3 bits (116), Expect = 4e-08
 Identities = 27/136 (19%), Positives = 47/136 (34%), Gaps = 4/136 (2%)

Query: 54  WWVNNWATGNYTSYHCKWTGVSCNSAGSVIGVSLLWYENDNITGELGRFKFSCFPNLKSF 113
                  +        K   ++      V  ++ L                S    L + 
Sbjct: 94  GNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNL 153

Query: 114 KIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLSDNYLSGYI 173
           +  S      S  + +A +S L TL+   + ++ I PL    L NL+ + L +N +S   
Sbjct: 154 QYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISPL--ASLPNLIEVHLKNNQISDVS 211

Query: 174 PPTLGRLSKLEILNLS 189
           P  L   S L I+ L+
Sbjct: 212 P--LANTSNLFIVTLT 225

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.3 bits (85), Expect = 4e-04
 Identities = 13/78 (16%), Positives = 29/78 (37%), Gaps = 5/78 (6%)

Query: 89  WYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGI 148
            Y +            +    L + K   N +      S +A++  L  + L ++ ++ +
Sbjct: 154 QYLSIGNAQVSDLTPLANLSKLTTLKADDNKISD---ISPLASLPNLIEVHLKNNQISDV 210

Query: 149 IPLEMGRLRNLVHLDLSD 166
            PL      NL  + L++
Sbjct: 211 SPL--ANTSNLFIVTLTN 226

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 47.9 bits (112), Expect = 2e-07
 Identities = 21/134 (15%), Positives = 41/134 (30%), Gaps = 10/134 (7%)

Query: 54  WWVNNWATGNYTSYHCKWTGVSCNSAGSVIGVSLLWYENDNITGELGRFKFSCFPNLKSF 113
              +N+ T                +  S +          N +    R      P+L+  
Sbjct: 230 NVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEEL 289

Query: 114 KIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLSDNYLSGYI 173
            + +N L+   +P+       L+ L    + L  +  L     +NL  L +  N L    
Sbjct: 290 NVSNNKLIE--LPALP---PRLERLIASFNHLAEVPEL----PQNLKQLHVEYNPLRE-F 339

Query: 174 PPTLGRLSKLEILN 187
           P     +  L + +
Sbjct: 340 PDIPESVEDLRMNS 353

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.3 bits (110), Expect = 4e-07
 Identities = 16/92 (17%), Positives = 30/92 (32%), Gaps = 9/92 (9%)

Query: 109 NLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGI----IPLEMGRLRNLVHLDL 164
           +++S  I    L        +  +   Q + L    LT      I   +     L  L+L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 165 SDNYLSGYIPPTLGRL-----SKLEILNLSSN 191
             N L       + +       K++ L+L + 
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNC 94

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.1 bits (94), Expect = 4e-05
 Identities = 17/64 (26%), Positives = 27/64 (42%), Gaps = 5/64 (7%)

Query: 135 LQTLELPSSSLTGIIPLEM-GRLRNLVHLDLSDNYLSG----YIPPTLGRLSKLEILNLS 189
           +Q+L++    L+     E+   L+    + L D  L+      I   L     L  LNL 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 190 SNDL 193
           SN+L
Sbjct: 64  SNEL 67

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.2 bits (89), Expect = 2e-04
 Identities = 19/149 (12%), Positives = 32/149 (21%), Gaps = 9/149 (6%)

Query: 54  WWVNNWATGNYTSYHCKWTGVSCNSAGSVIGVSLLWYENDNITGELGRFKFSCFPNLKSF 113
              N                  C      +          +    +            S 
Sbjct: 290 LAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISN 349

Query: 114 KIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGI----IPLEMGRLRNLVHLDLSDNYL 169
               +  +           S+L+ L L    ++      +   +    +L  LDLS+N L
Sbjct: 350 NRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCL 409

Query: 170 SGYIPPTLGR-----LSKLEILNLSSNDL 193
                  L          LE L L     
Sbjct: 410 GDAGILQLVESVRQPGCLLEQLVLYDIYW 438

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (93), Expect = 4e-05
 Identities = 8/44 (18%), Positives = 13/44 (29%)

Query: 148 IIPLEMGRLRNLVHLDLSDNYLSGYIPPTLGRLSKLEILNLSSN 191
           +           V LD+S   +       L  L KL   +  + 
Sbjct: 192 LPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNL 235

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.4 bits (93), Expect = 4e-05
 Identities = 31/140 (22%), Positives = 50/140 (35%), Gaps = 7/140 (5%)

Query: 54  WWVNNWATGNYTSYHCKWTGVSCNSAGSVIGVSLLWYENDNITGELGRFKFSCFPNLKSF 113
           +   N  T      + K  G        V  +S L       +  L     S    L   
Sbjct: 74  FLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHL 133

Query: 114 KIHSNYLLSGSIPSEIAAVSMLQTLELP---SSSLTGIIPLEMGRLRNLVHLDLSDNYLS 170
               +  L  +  ++I  +S L  L+      + ++ I+PL    L  L +L LS N++S
Sbjct: 134 PQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPL--AGLTKLQNLYLSKNHIS 191

Query: 171 GYIPPTLGRLSKLEILNLSS 190
                 L  L  L++L L S
Sbjct: 192 D--LRALAGLKNLDVLELFS 209

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 36.1 bits (82), Expect = 0.001
 Identities = 11/77 (14%), Positives = 28/77 (36%), Gaps = 10/77 (12%)

Query: 124 SIPSEIAAV------SMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLSDNYLSGYIPPTL 177
           ++P+ I  +      +      L   S+T  +      L ++  +  +++ +       +
Sbjct: 9   TVPTPIKQIFSDDAFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIKSVQG--I 64

Query: 178 GRLSKLEILNLSSNDLY 194
             L  +  L L+ N L 
Sbjct: 65  QYLPNVTKLFLNGNKLT 81

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.5 bits (93), Expect = 5e-05
 Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 3/64 (4%)

Query: 128 EIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLSDNYLSGYIPPTLGRLSKLEILN 187
           E++ V+    +     +LT + P ++ +  +   L LS+N L  +   TL   ++L  LN
Sbjct: 5   EVSKVASHLEVNCDKRNLTAL-PPDLPK--DTTILHLSENLLYTFSLATLMPYTRLTQLN 61

Query: 188 LSSN 191
           L   
Sbjct: 62  LDRA 65

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.9 bits (89), Expect = 1e-04
 Identities = 13/48 (27%), Positives = 16/48 (33%), Gaps = 1/48 (2%)

Query: 146 TGIIPLEMGRLRNLVHLDLSDNYLSGYIPPTLGRLSKLEILNLSSNDL 193
           T +    +  L NL  L L +N L   IP        L    L  N  
Sbjct: 161 TELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW 207

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 36.6 bits (83), Expect = 8e-04
 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 4/45 (8%)

Query: 142 SSSLTGIIPLEMGRLRNLVHLDLSDNYLSGYIPPTLGRLSKLEIL 186
           S+ +T + PL    L  L  LD+S N +S      L +L+ LE L
Sbjct: 159 SNQVTDLKPL--ANLTTLERLDISSNKVSD--ISVLAKLTNLESL 199

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.1 bits (82), Expect = 0.001
 Identities = 7/39 (17%), Positives = 14/39 (35%), Gaps = 1/39 (2%)

Query: 156 LRNLVHLDLSDNYLSGYIPPTLGRLSKLEILNLSSNDLY 194
                 LDL    +   I      L + + ++ S N++ 
Sbjct: 17  AVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR 54

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 35.9 bits (81), Expect = 0.001
 Identities = 28/123 (22%), Positives = 46/123 (37%), Gaps = 8/123 (6%)

Query: 68  HCKWTGVSCNSAG-----SVIGVSL--LWYENDNITGELGRFKFSCFPNLKSFKIHSNYL 120
           HC+ T V C   G       I +    L   ++ +        F   P+L   ++  N L
Sbjct: 7   HCEGTTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQL 66

Query: 121 LSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLSDNYLSGYIPPTLGRL 180
                 +   A  + Q L+L  + +  I       L  L  L+L DN +S  +P +   L
Sbjct: 67  TGIEPNAFEGASHI-QELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHL 125

Query: 181 SKL 183
           + L
Sbjct: 126 NSL 128

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 34.8 bits (78), Expect = 0.003
 Identities = 18/140 (12%), Positives = 39/140 (27%), Gaps = 5/140 (3%)

Query: 54  WWVNNWATGNYTSYHCKWTGVSCNSAGSVIGVSLLWYENDNITGELGRFKFSCFPNLKSF 113
                                   +A             +N   E+    F     LK+ 
Sbjct: 48  GLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTL 107

Query: 114 KIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLSDNYLSGYI 173
            ++ +  +S  +P     ++ L +L L S+       L       L    L+        
Sbjct: 108 NLY-DNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHL-AWFAEWLRKKSLNGGAARCGA 165

Query: 174 PPTLGRLSKLEILNLSSNDL 193
           P    ++  ++I +L  ++ 
Sbjct: 166 PS---KVRDVQIKDLPHSEF 182

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 36.4 bits (82), Expect = 0.001
 Identities = 10/49 (20%), Positives = 14/49 (28%), Gaps = 5/49 (10%)

Query: 150 PLEMGRLRNLVHLDLSDNYLSGYIPPTL-----GRLSKLEILNLSSNDL 193
                    L  L L  N +      TL      ++  L  L L+ N  
Sbjct: 266 AFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF 314

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.9 bits (81), Expect = 0.002
 Identities = 18/135 (13%), Positives = 38/135 (28%), Gaps = 3/135 (2%)

Query: 54  WWVNNWATGNYTSYHCKWTGVSCNSAGSVIGVSLLWYENDNITGELGRFKFSCFPNLKSF 113
                                          +  L   +  +       +F     L+  
Sbjct: 146 VSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHL 205

Query: 114 KIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLSDNYLSGYI 173
            +   Y +      E+  +  L+TL++      G + L       L HL ++ ++ +   
Sbjct: 206 SLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLL---KEALPHLQINCSHFTTIA 262

Query: 174 PPTLGRLSKLEILNL 188
            PT+G     EI  +
Sbjct: 263 RPTIGNKKNQEIWGI 277

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.2 bits (80), Expect = 0.002
 Identities = 21/97 (21%), Positives = 37/97 (38%), Gaps = 6/97 (6%)

Query: 103 KFSCFPNLKSFKI----HSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEM--GRL 156
                P+L +  I    +    ++ ++      +  L +L L ++ L  +  +     + 
Sbjct: 31  GLRSDPDLVAQNIDVVLNRRSSMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKA 90

Query: 157 RNLVHLDLSDNYLSGYIPPTLGRLSKLEILNLSSNDL 193
            NL  L+LS N L         +  KLE L L  N L
Sbjct: 91  PNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSL 127

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	194
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.93
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.76
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.66
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.61
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.57
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.55
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.54
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.52
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.51
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.5
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.47
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.42
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.39
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.33
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.28
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.27
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.25
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.23
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.2
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.18
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.16
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.13
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.05
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.04
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	98.98
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.98
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	98.97
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	98.78
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.77
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.54
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.5
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.37
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	98.34
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.33
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.19
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.08
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	97.9
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	97.87
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.61
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.44
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.17
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	95.82

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.93  E-value=1.6e-26  Score=181.94  Aligned_cols=154  Identities=27%  Similarity=0.418  Sum_probs=137.6

Q ss_pred             cCCCCchhHHHHHHHhhcCCCCCCCCCCCCCCCCCc--ccccceeCCCCCeeeeeeeeccCCcccc--ccCccccCCCCC
Q 046655           34 AAGLLSSPKLLEREALLATGWWVNNWATGNYTSYHC--KWTGVSCNSAGSVIGVSLLWYENDNITG--ELGRFKFSCFPN  109 (194)
Q Consensus        34 ~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~~~c--~~~gv~c~~~~~~~~l~~l~l~~n~l~~--~lp~~~~~~l~~  109 (194)
                      +.++|++||++||+.+.++. .+++|   ..++++|  .|.||+|+..+.+.++..++++++++.|  .+| ..+.++++
T Consensus         3 c~~~e~~aLl~~k~~~~~~~-~l~sW---~~~~d~C~~~w~gv~C~~~~~~~~v~~L~L~~~~l~g~~~lp-~~l~~L~~   77 (313)
T d1ogqa_           3 CNPQDKQALLQIKKDLGNPT-TLSSW---LPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIP-SSLANLPY   77 (313)
T ss_dssp             SCHHHHHHHHHHHHHTTCCG-GGTTC---CTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECC-GGGGGCTT
T ss_pred             CCHHHHHHHHHHHHHCCCCC-cCCCC---CCCCCCCCCcCCCeEEeCCCCcEEEEEEECCCCCCCCCCCCC-hHHhcCcc
Confidence            35667899999999998765 67899   5678999  5999999987777777778889999987  578 78999999


Q ss_pred             ccEEEecC-CCCCcccCCccccCCCCCCEeecCCCcccccCchhhccCcccceeecccCccCCCCccccCCCCCCCeEec
Q 046655          110 LKSFKIHS-NYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLSDNYLSGYIPPTLGRLSKLEILNL  188 (194)
Q Consensus       110 L~~L~l~~-n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~l  188 (194)
                      |++|++++ | .++|.+|..|+++++|++|+|++|++.+..|..+..+..|+.++++.|++.+.+|..+.++++++++++
T Consensus        78 L~~L~Ls~~N-~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l  156 (313)
T d1ogqa_          78 LNFLYIGGIN-NLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITF  156 (313)
T ss_dssp             CSEEEEEEET-TEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEEC
T ss_pred             cccccccccc-ccccccccccccccccchhhhccccccccccccccchhhhcccccccccccccCchhhccCcccceeec
Confidence            99999997 7 899999999999999999999999999988888999999999999999999999999999999999999


Q ss_pred             cCCcC
Q 046655          189 SSNDL  193 (194)
Q Consensus       189 s~N~l  193 (194)
                      ++|.+
T Consensus       157 ~~n~l  161 (313)
T d1ogqa_         157 DGNRI  161 (313)
T ss_dssp             CSSCC
T ss_pred             ccccc
Confidence            99875

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.76  E-value=2.2e-18  Score=126.23  Aligned_cols=129  Identities=26%  Similarity=0.406  Sum_probs=110.6

Q ss_pred             CCCCcccccceeCCCC--Ce-----eeeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCE
Q 046655           65 TSYHCKWTGVSCNSAG--SV-----IGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQT  137 (194)
Q Consensus        65 ~~~~c~~~gv~c~~~~--~~-----~~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~  137 (194)
                      ....|.+..|.|...+  .+     ..++.|++++|+|++.++...|..+++|++|++++| .+.+..+..|..+++|++
T Consensus         4 ~~C~C~~~~v~Cs~~~L~~iP~~lp~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N-~i~~~~~~~~~~~~~L~~   82 (192)
T d1w8aa_           4 AMCHCEGTTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRN-QLTGIEPNAFEGASHIQE   82 (192)
T ss_dssp             TTSEEETTEEECTTSCCSSCCSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSS-CCCCBCTTTTTTCTTCCE
T ss_pred             CCCEEcCCEEEEeCCCcCccCCCCCCCCCEEEeCCCCCcccccccccCCCceEeeeecccc-ccccccccccccccccce
Confidence            3455778888886311  11     356679999999986676577889999999999999 888888999999999999


Q ss_pred             eecCCCcccccCchhhccCcccceeecccCccCCCCccccCCCCCCCeEeccCCcCC
Q 046655          138 LELPSSSLTGIIPLEMGRLRNLVHLDLSDNYLSGYIPPTLGRLSKLEILNLSSNDLY  194 (194)
Q Consensus       138 L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~ls  194 (194)
                      |+|++|++....|..|.++++|++|+|++|++++..|..|..+++|+++++++|++.
T Consensus        83 L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~  139 (192)
T d1w8aa_          83 LQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             EECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred             eeeccccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccc
Confidence            999999999777778999999999999999999877778999999999999999863

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.66  E-value=1.8e-16  Score=108.11  Aligned_cols=100  Identities=24%  Similarity=0.352  Sum_probs=86.4

Q ss_pred             eeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchhhccCcccceeeccc
Q 046655           87 LLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLSD  166 (194)
Q Consensus        87 ~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~  166 (194)
                      ++++++|+++ .++  .+..++.|++|++++| .++ .+|+.+..+++|+.|++++|+++ .+| .+..+++|+.+++++
T Consensus         2 ~L~Ls~n~l~-~l~--~l~~l~~L~~L~ls~N-~l~-~lp~~~~~l~~L~~L~l~~N~i~-~l~-~~~~l~~L~~L~l~~   74 (124)
T d1dcea3           2 VLHLAHKDLT-VLC--HLEQLLLVTHLDLSHN-RLR-ALPPALAALRCLEVLQASDNALE-NVD-GVANLPRLQELLLCN   74 (124)
T ss_dssp             EEECTTSCCS-SCC--CGGGGTTCCEEECCSS-CCC-CCCGGGGGCTTCCEEECCSSCCC-CCG-GGTTCSSCCEEECCS
T ss_pred             EEEcCCCCCC-CCc--ccccCCCCCEEECCCC-ccC-cchhhhhhhhccccccccccccc-ccC-ccccccccCeEECCC
Confidence            5788999998 777  4788999999999999 887 57888999999999999999998 455 588999999999999


Q ss_pred             CccCCCCc--cccCCCCCCCeEeccCCcCC
Q 046655          167 NYLSGYIP--PTLGRLSKLEILNLSSNDLY  194 (194)
Q Consensus       167 N~l~g~~p--~~~~~l~~L~~L~ls~N~ls  194 (194)
                      |+++. +|  ..+..+++|+++++++|+++
T Consensus        75 N~i~~-~~~~~~l~~~~~L~~L~l~~N~i~  103 (124)
T d1dcea3          75 NRLQQ-SAAIQPLVSCPRLVLLNLQGNSLC  103 (124)
T ss_dssp             SCCCS-SSTTGGGGGCTTCCEEECTTSGGG
T ss_pred             CccCC-CCCchhhcCCCCCCEEECCCCcCC
Confidence            99984 44  46888999999999999873

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=1.4e-15  Score=117.23  Aligned_cols=123  Identities=21%  Similarity=0.283  Sum_probs=105.0

Q ss_pred             cccccceeCCCCCeeeeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCccccc
Q 046655           69 CKWTGVSCNSAGSVIGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGI  148 (194)
Q Consensus        69 c~~~gv~c~~~~~~~~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~  148 (194)
                      |...++..........|..+++++|+++ .++...|..++.|++|++++| .+++..+..|.++++|+++++++|++++.
T Consensus       115 n~~~~~~~~~~~~~~~L~~l~l~~N~l~-~i~~~~f~~~~~L~~L~l~~N-~l~~l~~~~f~~l~~L~~l~l~~N~l~~i  192 (284)
T d1ozna_         115 CGLQELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGN-RISSVPERAFRGLHSLDRLLLHQNRVAHV  192 (284)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCCEE
T ss_pred             cccccccccccchhcccchhhhcccccc-ccChhHhccccchhhcccccC-cccccchhhhccccccchhhhhhcccccc
Confidence            3444455555566777778888999998 666467888899999999999 88877788889999999999999999988


Q ss_pred             CchhhccCcccceeecccCccCCCCccccCCCCCCCeEeccCCcC
Q 046655          149 IPLEMGRLRNLVHLDLSDNYLSGYIPPTLGRLSKLEILNLSSNDL  193 (194)
Q Consensus       149 ~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l  193 (194)
                      .|..|.++++|++|++++|++++..|..|+.+++|++|++++|++
T Consensus       193 ~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l  237 (284)
T d1ozna_         193 HPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPW  237 (284)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCE
T ss_pred             ChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCC
Confidence            899999999999999999999987778899999999999999975

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.57  E-value=5.7e-15  Score=107.65  Aligned_cols=103  Identities=20%  Similarity=0.221  Sum_probs=90.8

Q ss_pred             eeeccCCccccccCccccCCCCCccEEEecCCCCCcccC-CccccCCCCCCEeecCCCcccccCchhhccCcccceeecc
Q 046655           87 LLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSI-PSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLS  165 (194)
Q Consensus        87 ~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~-p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~  165 (194)
                      .++.++++++ .+| ..+  .+.+++|++++| .+++.+ +..|..+++|+.|+|++|++....+..+..+++|+.|+++
T Consensus        12 ~v~Cs~~~L~-~iP-~~l--p~~l~~L~Ls~N-~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls   86 (192)
T d1w8aa_          12 TVDCTGRGLK-EIP-RDI--PLHTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG   86 (192)
T ss_dssp             EEECTTSCCS-SCC-SCC--CTTCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             EEEEeCCCcC-ccC-CCC--CCCCCEEEeCCC-CCcccccccccCCCceEeeeeccccccccccccccccccccceeeec
Confidence            4677899999 999 444  368999999999 887644 5667899999999999999998888899999999999999


Q ss_pred             cCccCCCCccccCCCCCCCeEeccCCcCC
Q 046655          166 DNYLSGYIPPTLGRLSKLEILNLSSNDLY  194 (194)
Q Consensus       166 ~N~l~g~~p~~~~~l~~L~~L~ls~N~ls  194 (194)
                      +|++++..|..|.++++|++|+|++|+|+
T Consensus        87 ~N~l~~l~~~~F~~l~~L~~L~L~~N~l~  115 (192)
T d1w8aa_          87 ENKIKEISNKMFLGLHQLKTLNLYDNQIS  115 (192)
T ss_dssp             SCCCCEECSSSSTTCTTCCEEECCSSCCC
T ss_pred             cccccccCHHHHhCCCcccccccCCcccc
Confidence            99999777778999999999999999875

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=5.4e-15  Score=105.17  Aligned_cols=106  Identities=17%  Similarity=0.133  Sum_probs=83.0

Q ss_pred             eeeeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchhhccCcccce
Q 046655           82 VIGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVH  161 (194)
Q Consensus        82 ~~~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~  161 (194)
                      ...++.+++++|+|+ .++ ..+..+++|++|++++| .++. + +.+..+++|++|++++|+++...+..+..+++|+.
T Consensus        17 ~~~lr~L~L~~n~I~-~i~-~~~~~l~~L~~L~Ls~N-~i~~-l-~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~   91 (162)
T d1a9na_          17 AVRDRELDLRGYKIP-VIE-NLGATLDQFDAIDFSDN-EIRK-L-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE   91 (162)
T ss_dssp             TTSCEEEECTTSCCC-SCC-CGGGGTTCCSEEECCSS-CCCE-E-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred             cCcCcEEECCCCCCC-ccC-ccccccccCCEEECCCC-CCCc-c-CCcccCcchhhhhcccccccCCCcccccccccccc
Confidence            345666888999988 777 55677888999999999 7773 4 35788889999999999998544445677889999


Q ss_pred             eecccCccCCCCcc--ccCCCCCCCeEeccCCcC
Q 046655          162 LDLSDNYLSGYIPP--TLGRLSKLEILNLSSNDL  193 (194)
Q Consensus       162 L~L~~N~l~g~~p~--~~~~l~~L~~L~ls~N~l  193 (194)
                      |++++|+++ .+++  .+..+++|+++++++|++
T Consensus        92 L~L~~N~i~-~~~~l~~l~~l~~L~~L~l~~N~i  124 (162)
T d1a9na_          92 LILTNNSLV-ELGDLDPLASLKSLTYLCILRNPV  124 (162)
T ss_dssp             EECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGG
T ss_pred             ceecccccc-ccccccccccccccchhhcCCCcc
Confidence            999999888 3443  577888999999998876

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.54  E-value=1.8e-15  Score=117.93  Aligned_cols=115  Identities=28%  Similarity=0.477  Sum_probs=105.7

Q ss_pred             CCCCCeeeeeeeeccC-CccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchhhcc
Q 046655           77 NSAGSVIGVSLLWYEN-DNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGR  155 (194)
Q Consensus        77 ~~~~~~~~l~~l~l~~-n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~  155 (194)
                      ...+.++.|+.+++++ |++.|.+| ..+.++++|++|++++| .+.+..+..+..+..|+.+++++|.+.+.+|..+..
T Consensus        70 ~~l~~L~~L~~L~Ls~~N~l~g~iP-~~i~~L~~L~~L~Ls~N-~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~  147 (313)
T d1ogqa_          70 SSLANLPYLNFLYIGGINNLVGPIP-PAIAKLTQLHYLYITHT-NVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISS  147 (313)
T ss_dssp             GGGGGCTTCSEEEEEEETTEESCCC-GGGGGCTTCSEEEEEEE-CCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGG
T ss_pred             hHHhcCccccccccccccccccccc-cccccccccchhhhccc-cccccccccccchhhhcccccccccccccCchhhcc
Confidence            3456788888899987 89999999 78999999999999999 999989999999999999999999999999999999


Q ss_pred             CcccceeecccCccCCCCccccCCCCCC-CeEeccCCcC
Q 046655          156 LRNLVHLDLSDNYLSGYIPPTLGRLSKL-EILNLSSNDL  193 (194)
Q Consensus       156 l~~L~~L~L~~N~l~g~~p~~~~~l~~L-~~L~ls~N~l  193 (194)
                      ++.++.+++++|+++|.+|..+..+.++ +.+++++|++
T Consensus       148 l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l  186 (313)
T d1ogqa_         148 LPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRL  186 (313)
T ss_dssp             CTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEE
T ss_pred             Ccccceeeccccccccccccccccccccccccccccccc
Confidence            9999999999999999999999888876 8899998875

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=4.9e-14  Score=99.51  Aligned_cols=101  Identities=22%  Similarity=0.143  Sum_probs=82.0

Q ss_pred             cCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchhhccCcccceeecccCccC
Q 046655           91 ENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLSDNYLS  170 (194)
Q Consensus        91 ~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~  170 (194)
                      .++++. ++| ..+..++++++|++++|..++...+..|.++++|+.|++++|+++...|..|..+++|++|+|++|+++
T Consensus        16 ~~~~~~-~~p-~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~   93 (156)
T d2ifga3          16 TRDGAL-DSL-HHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALE   93 (156)
T ss_dssp             CSSCCC-TTT-TTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCS
T ss_pred             cCCCCc-cCc-ccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCCCCc
Confidence            344444 566 567788999999998773577656677999999999999999999777788999999999999999999


Q ss_pred             CCCccccCCCCCCCeEeccCCcCC
Q 046655          171 GYIPPTLGRLSKLEILNLSSNDLY  194 (194)
Q Consensus       171 g~~p~~~~~l~~L~~L~ls~N~ls  194 (194)
                       .+|.......+|+.|++++|+|.
T Consensus        94 -~l~~~~~~~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          94 -SLSWKTVQGLSLQELVLSGNPLH  116 (156)
T ss_dssp             -CCCSTTTCSCCCCEEECCSSCCC
T ss_pred             -ccChhhhccccccccccCCCccc
Confidence             56666555568999999999873

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=6.9e-14  Score=106.70  Aligned_cols=109  Identities=22%  Similarity=0.198  Sum_probs=75.0

Q ss_pred             eeeeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchhhccCcccce
Q 046655           82 VIGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVH  161 (194)
Q Consensus        82 ~~~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~  161 (194)
                      +..|+.+++++|.+. .++...+..+.++++|++++| .+....+..+..+++++.+++++|++++..+..|..+++|++
T Consensus        99 l~~L~~L~l~~~~~~-~~~~~~~~~l~~l~~L~l~~n-~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~  176 (266)
T d1p9ag_          99 LPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGN-ELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDT  176 (266)
T ss_dssp             CTTCCEEECCSSCCC-CCCSSTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCE
T ss_pred             ccccccccccccccc-eeecccccccccccccccccc-ccceeccccccccccchhcccccccccccCccccccccccce
Confidence            333444444444444 233234445555555666666 555444555667788888888888888666667888888899


Q ss_pred             eecccCccCCCCccccCCCCCCCeEeccCCcC
Q 046655          162 LDLSDNYLSGYIPPTLGRLSKLEILNLSSNDL  193 (194)
Q Consensus       162 L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l  193 (194)
                      |+|++|+++ .+|+.+..+++|+.|+|++|++
T Consensus       177 L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~  207 (266)
T d1p9ag_         177 LLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW  207 (266)
T ss_dssp             EECCSSCCC-CCCTTTTTTCCCSEEECCSCCB
T ss_pred             eecccCCCc-ccChhHCCCCCCCEEEecCCCC
Confidence            999988888 7888888888888999988875

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=6e-14  Score=107.86  Aligned_cols=117  Identities=20%  Similarity=0.207  Sum_probs=102.6

Q ss_pred             eCCCCCeeeeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchhhcc
Q 046655           76 CNSAGSVIGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGR  155 (194)
Q Consensus        76 c~~~~~~~~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~  155 (194)
                      ...+..+++|+.+++++|.+. .++...+.....|+.+++++| .+++..+..|..+++|+.|++++|++.+..+..|.+
T Consensus        98 ~~~~~~l~~L~~L~l~~n~~~-~~~~~~~~~~~~L~~l~l~~N-~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~  175 (284)
T d1ozna_          98 PATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDN-ALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRG  175 (284)
T ss_dssp             TTTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTT
T ss_pred             chhhcccccCCEEecCCcccc-cccccccchhcccchhhhccc-cccccChhHhccccchhhcccccCcccccchhhhcc
Confidence            445667788888999999987 555467888899999999999 888766677889999999999999999777788999


Q ss_pred             CcccceeecccCccCCCCccccCCCCCCCeEeccCCcCC
Q 046655          156 LRNLVHLDLSDNYLSGYIPPTLGRLSKLEILNLSSNDLY  194 (194)
Q Consensus       156 l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~ls  194 (194)
                      +++|+.+++++|++++..|..|..+++|++|++++|+++
T Consensus       176 l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~  214 (284)
T d1ozna_         176 LHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS  214 (284)
T ss_dssp             CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred             ccccchhhhhhccccccChhHhhhhhhcccccccccccc
Confidence            999999999999999888999999999999999999874

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=1.8e-13  Score=104.35  Aligned_cols=122  Identities=23%  Similarity=0.251  Sum_probs=78.0

Q ss_pred             CcccccceeCCCCCeeeeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCC-------------
Q 046655           68 HCKWTGVSCNSAGSVIGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSM-------------  134 (194)
Q Consensus        68 ~c~~~gv~c~~~~~~~~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~-------------  134 (194)
                      .+...++....+.++++|+.+++++|+|+ .++  .+..+++|++|++++| .+++ ++..+..+++             
T Consensus        40 ~N~i~~l~~~~f~~l~~L~~L~L~~N~l~-~l~--~~~~l~~L~~L~Ls~N-~l~~-~~~~~~~l~~L~~L~l~~~~~~~  114 (266)
T d1p9ag_          40 ENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQ--VDGTLPVLGTLDLSHN-QLQS-LPLLGQTLPALTVLDVSFNRLTS  114 (266)
T ss_dssp             TSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEE--CCSCCTTCCEEECCSS-CCSS-CCCCTTTCTTCCEEECCSSCCCC
T ss_pred             CCcCCCcCHHHhhcccccccccccccccc-ccc--cccccccccccccccc-cccc-cccccccccccccccccccccce
Confidence            34445555444555666666666666665 554  2345556666666666 4442 3344444444             


Q ss_pred             -----------CCEeecCCCcccccCchhhccCcccceeecccCccCCCCccccCCCCCCCeEeccCCcCC
Q 046655          135 -----------LQTLELPSSSLTGIIPLEMGRLRNLVHLDLSDNYLSGYIPPTLGRLSKLEILNLSSNDLY  194 (194)
Q Consensus       135 -----------L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~ls  194 (194)
                                 +++|++++|.+....+..+..++.++.+++++|++++..+..|..+++|++|++++|+|+
T Consensus       115 ~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~  185 (266)
T d1p9ag_         115 LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY  185 (266)
T ss_dssp             CCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             eeccccccccccccccccccccceeccccccccccchhcccccccccccCccccccccccceeecccCCCc
Confidence                       455555555555333445667888999999999999766777889999999999999874

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.42  E-value=3.9e-13  Score=104.02  Aligned_cols=105  Identities=19%  Similarity=0.200  Sum_probs=62.7

Q ss_pred             eeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchhhccCcccceeec
Q 046655           85 VSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDL  164 (194)
Q Consensus        85 l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L  164 (194)
                      ++.+++++|...+..+ ..+..++.+++|++++| .+.+..+..+.++++|++|+|++|+++ .+|..+..+++|++|++
T Consensus       173 L~~L~l~~n~~~~~~~-~~~~~~~~l~~L~~s~n-~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~L  249 (305)
T d1xkua_         173 LTELHLDGNKITKVDA-ASLKGLNNLAKLGLSFN-SISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYL  249 (305)
T ss_dssp             CSEEECTTSCCCEECT-GGGTTCTTCCEEECCSS-CCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEEC
T ss_pred             cCEEECCCCcCCCCCh-hHhhccccccccccccc-cccccccccccccccceeeeccccccc-ccccccccccCCCEEEC
Confidence            3445556666554444 45666666666666666 566555556666666666666666666 45666666666666666


Q ss_pred             ccCccCCCCcc-------ccCCCCCCCeEeccCCcC
Q 046655          165 SDNYLSGYIPP-------TLGRLSKLEILNLSSNDL  193 (194)
Q Consensus       165 ~~N~l~g~~p~-------~~~~l~~L~~L~ls~N~l  193 (194)
                      ++|+++ .++.       ....+.+|+.|++++|++
T Consensus       250 s~N~i~-~i~~~~f~~~~~~~~~~~L~~L~L~~N~~  284 (305)
T d1xkua_         250 HNNNIS-AIGSNDFCPPGYNTKKASYSGVSLFSNPV  284 (305)
T ss_dssp             CSSCCC-CCCTTSSSCSSCCTTSCCCSEEECCSSSS
T ss_pred             CCCccC-ccChhhccCcchhcccCCCCEEECCCCcC
Confidence            666666 3322       123445666666666654

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.39  E-value=6.9e-13  Score=89.95  Aligned_cols=78  Identities=24%  Similarity=0.374  Sum_probs=69.9

Q ss_pred             cEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchhhccCcccceeecccCccCCCCccccCCCCCCCeEeccC
Q 046655          111 KSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLSDNYLSGYIPPTLGRLSKLEILNLSS  190 (194)
Q Consensus       111 ~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~  190 (194)
                      ++|++++| .++ .++ .+..+++|++|++++|+++ .+|+.++.+++|+.|++++|+++ .+| .+.++++|++|++++
T Consensus         1 R~L~Ls~n-~l~-~l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~-~l~-~~~~l~~L~~L~l~~   74 (124)
T d1dcea3           1 RVLHLAHK-DLT-VLC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVD-GVANLPRLQELLLCN   74 (124)
T ss_dssp             SEEECTTS-CCS-SCC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCG-GGTTCSSCCEEECCS
T ss_pred             CEEEcCCC-CCC-CCc-ccccCCCCCEEECCCCccC-cchhhhhhhhccccccccccccc-ccC-ccccccccCeEECCC
Confidence            57999999 887 454 5899999999999999998 78888999999999999999999 466 489999999999999


Q ss_pred             CcCC
Q 046655          191 NDLY  194 (194)
Q Consensus       191 N~ls  194 (194)
                      |+|+
T Consensus        75 N~i~   78 (124)
T d1dcea3          75 NRLQ   78 (124)
T ss_dssp             SCCC
T ss_pred             CccC
Confidence            9874

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.33  E-value=2.8e-12  Score=99.07  Aligned_cols=110  Identities=18%  Similarity=0.264  Sum_probs=97.1

Q ss_pred             CCCeeeeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchhhccCcc
Q 046655           79 AGSVIGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRN  158 (194)
Q Consensus        79 ~~~~~~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~  158 (194)
                      ...++.+..+++++|++. .+| ..  .++++++|++++| ...+..+..+..++.++.|++++|.+.+..+..+.++++
T Consensus       146 ~~~l~~L~~l~l~~n~l~-~l~-~~--~~~~L~~L~l~~n-~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~  220 (305)
T d1xkua_         146 FQGMKKLSYIRIADTNIT-TIP-QG--LPPSLTELHLDGN-KITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPH  220 (305)
T ss_dssp             GGGCTTCCEEECCSSCCC-SCC-SS--CCTTCSEEECTTS-CCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTT
T ss_pred             cccccccCccccccCCcc-ccC-cc--cCCccCEEECCCC-cCCCCChhHhhcccccccccccccccccccccccccccc
Confidence            345566777888999888 777 33  3688999999999 788888899999999999999999999888888999999


Q ss_pred             cceeecccCccCCCCccccCCCCCCCeEeccCCcCC
Q 046655          159 LVHLDLSDNYLSGYIPPTLGRLSKLEILNLSSNDLY  194 (194)
Q Consensus       159 L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~ls  194 (194)
                      |++|+|++|+++ .+|+.+.++++|++|++++|+|+
T Consensus       221 L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~  255 (305)
T d1xkua_         221 LRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS  255 (305)
T ss_dssp             CCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCC
T ss_pred             ceeeeccccccc-ccccccccccCCCEEECCCCccC
Confidence            999999999999 68999999999999999999874

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=8.5e-12  Score=87.74  Aligned_cols=98  Identities=20%  Similarity=0.229  Sum_probs=79.2

Q ss_pred             ccccceeCC---------CCCeeeeeeeeccCCc-cccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEee
Q 046655           70 KWTGVSCNS---------AGSVIGVSLLWYENDN-ITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLE  139 (194)
Q Consensus        70 ~~~gv~c~~---------~~~~~~l~~l~l~~n~-l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~  139 (194)
                      .+++++|..         ...+.++..+++.+|+ ++ .++...|..+++|+.|++++| .++...+..|..+++|++|+
T Consensus         9 ~~~~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~-~i~~~~f~~l~~L~~L~Ls~N-~l~~i~~~~f~~l~~L~~L~   86 (156)
T d2ifga3           9 GSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQ-HLELRDLRGLGELRNLTIVKS-GLRFVAPDAFHFTPRLSRLN   86 (156)
T ss_dssp             SSSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCC-EECGGGSCSCCCCSEEECCSS-CCCEECTTGGGSCSCCCEEE
T ss_pred             CCCeEEecCCCCccCcccccCccccCeeecCCCcccc-ccCchhhccccccCcceeecc-ccCCccccccccccccccee
Confidence            455666652         2345666778887775 77 888678999999999999999 89987788899999999999


Q ss_pred             cCCCcccccCchhhccCcccceeecccCccC
Q 046655          140 LPSSSLTGIIPLEMGRLRNLVHLDLSDNYLS  170 (194)
Q Consensus       140 L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~  170 (194)
                      |++|+++ .+|........|+.|++++|.+.
T Consensus        87 Ls~N~l~-~l~~~~~~~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          87 LSFNALE-SLSWKTVQGLSLQELVLSGNPLH  116 (156)
T ss_dssp             CCSSCCS-CCCSTTTCSCCCCEEECCSSCCC
T ss_pred             ccCCCCc-ccChhhhccccccccccCCCccc
Confidence            9999999 66665445557999999999885

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=2e-12  Score=91.57  Aligned_cols=88  Identities=15%  Similarity=0.167  Sum_probs=74.7

Q ss_pred             ccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchhhccCcccceeecccCccCCCCccccCCCCC
Q 046655          103 KFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLSDNYLSGYIPPTLGRLSK  182 (194)
Q Consensus       103 ~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~  182 (194)
                      .+.+...+++|++++| .++ .++..+..+++|+.|++++|+++ .+ +.+..+++|+.|++++|+++...+..+..+++
T Consensus        13 ~~~n~~~lr~L~L~~n-~I~-~i~~~~~~l~~L~~L~Ls~N~i~-~l-~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~   88 (162)
T d1a9na_          13 QYTNAVRDRELDLRGY-KIP-VIENLGATLDQFDAIDFSDNEIR-KL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPD   88 (162)
T ss_dssp             EEECTTSCEEEECTTS-CCC-SCCCGGGGTTCCSEEECCSSCCC-EE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTT
T ss_pred             hccCcCcCcEEECCCC-CCC-ccCccccccccCCEEECCCCCCC-cc-CCcccCcchhhhhcccccccCCCccccccccc
Confidence            4667788999999999 887 46776788999999999999998 44 35889999999999999999544444678999


Q ss_pred             CCeEeccCCcCC
Q 046655          183 LEILNLSSNDLY  194 (194)
Q Consensus       183 L~~L~ls~N~ls  194 (194)
                      |++|++++|+|+
T Consensus        89 L~~L~L~~N~i~  100 (162)
T d1a9na_          89 LTELILTNNSLV  100 (162)
T ss_dssp             CCEEECCSCCCC
T ss_pred             cccceecccccc
Confidence            999999999874

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.25  E-value=2.9e-11  Score=88.03  Aligned_cols=104  Identities=23%  Similarity=0.406  Sum_probs=64.4

Q ss_pred             CeeeeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchhhccCcccc
Q 046655           81 SVIGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLV  160 (194)
Q Consensus        81 ~~~~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~  160 (194)
                      .+++|+.+++++|.+. .++  .+..++.|+.|++++| ....  ...+..+++|+.+++++|++. .+ +.+..+++|+
T Consensus        82 ~l~~L~~L~l~~n~~~-~~~--~l~~l~~L~~L~l~~~-~~~~--~~~~~~l~~L~~L~l~~n~l~-~~-~~l~~~~~L~  153 (199)
T d2omxa2          82 NLTKLVDILMNNNQIA-DIT--PLANLTNLTGLTLFNN-QITD--IDPLKNLTNLNRLELSSNTIS-DI-SALSGLTSLQ  153 (199)
T ss_dssp             TCTTCCEEECCSSCCC-CCG--GGTTCTTCSEEECCSS-CCCC--CGGGTTCTTCSEEECCSSCCC-CC-GGGTTCTTCS
T ss_pred             CCcccccccccccccc-ccc--cccccccccccccccc-cccc--ccccchhhhhHHhhhhhhhhc-cc-cccccccccc
Confidence            3334444444444444 333  2445555555555555 3332  233556677777777777776 33 3467778888


Q ss_pred             eeecccCccCCCCccccCCCCCCCeEeccCCcCC
Q 046655          161 HLDLSDNYLSGYIPPTLGRLSKLEILNLSSNDLY  194 (194)
Q Consensus       161 ~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~ls  194 (194)
                      .+++.+|++++ ++ .++++++|++|++++|+++
T Consensus       154 ~L~l~~n~l~~-l~-~l~~l~~L~~L~ls~N~i~  185 (199)
T d2omxa2         154 QLNFSSNQVTD-LK-PLANLTTLERLDISSNKVS  185 (199)
T ss_dssp             EEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCC
T ss_pred             ccccccccccC-Cc-cccCCCCCCEEECCCCCCC
Confidence            88888888874 44 3788889999999988764

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.23  E-value=4.4e-11  Score=87.83  Aligned_cols=104  Identities=28%  Similarity=0.428  Sum_probs=55.9

Q ss_pred             CeeeeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchhhccCcccc
Q 046655           81 SVIGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLV  160 (194)
Q Consensus        81 ~~~~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~  160 (194)
                      .+++|+.+++++|+++ .++  .+..++.|+.|++++| .+..  ...+..++.++.+++++|.+.+  +..+..+++|+
T Consensus        88 ~l~~L~~L~l~~n~i~-~l~--~l~~l~~L~~L~l~~~-~~~~--~~~l~~l~~l~~l~~~~n~l~~--~~~~~~l~~L~  159 (210)
T d1h6ta2          88 NLKNLGWLFLDENKVK-DLS--SLKDLKKLKSLSLEHN-GISD--INGLVHLPQLESLYLGNNKITD--ITVLSRLTKLD  159 (210)
T ss_dssp             TCTTCCEEECCSSCCC-CGG--GGTTCTTCCEEECTTS-CCCC--CGGGGGCTTCCEEECCSSCCCC--CGGGGGCTTCS
T ss_pred             cCcccccccccccccc-ccc--cccccccccccccccc-cccc--cccccccccccccccccccccc--ccccccccccc
Confidence            3444444555555554 343  2444555555555555 3321  1233444444444444444432  23455667777


Q ss_pred             eeecccCccCCCCccccCCCCCCCeEeccCCcCC
Q 046655          161 HLDLSDNYLSGYIPPTLGRLSKLEILNLSSNDLY  194 (194)
Q Consensus       161 ~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~ls  194 (194)
                      .+++++|++++ +++ +.++++|+.|++++|+|+
T Consensus       160 ~l~l~~n~l~~-i~~-l~~l~~L~~L~Ls~N~i~  191 (210)
T d1h6ta2         160 TLSLEDNQISD-IVP-LAGLTKLQNLYLSKNHIS  191 (210)
T ss_dssp             EEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCC
T ss_pred             ccccccccccc-ccc-ccCCCCCCEEECCCCCCC
Confidence            77777777774 333 677777777777777663

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.20  E-value=1.5e-13  Score=100.68  Aligned_cols=107  Identities=25%  Similarity=0.315  Sum_probs=89.2

Q ss_pred             CCCeeeeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchhhccCcc
Q 046655           79 AGSVIGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRN  158 (194)
Q Consensus        79 ~~~~~~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~  158 (194)
                      ...+++|+.+++++|+|+ .++  .+..+++|++|++++| .++ .+|..+..+++|+.|++++|+++. + +.+..+++
T Consensus        44 l~~L~~L~~L~Ls~n~I~-~i~--~l~~l~~L~~L~Ls~N-~i~-~i~~~~~~~~~L~~L~l~~N~i~~-l-~~~~~l~~  116 (198)
T d1m9la_          44 LSTLKACKHLALSTNNIE-KIS--SLSGMENLRILSLGRN-LIK-KIENLDAVADTLEELWISYNQIAS-L-SGIEKLVN  116 (198)
T ss_dssp             HHHTTTCCEEECSEEEES-CCC--CHHHHTTCCEEECCEE-EEC-SCSSHHHHHHHCCEEECSEEECCC-H-HHHHHHHH
T ss_pred             HhcccccceeECcccCCC-Ccc--cccCCccccChhhccc-ccc-cccccccccccccccccccccccc-c-cccccccc
Confidence            345677788999999999 776  4788999999999999 776 466656666789999999999984 3 45888999


Q ss_pred             cceeecccCccCCCCc--cccCCCCCCCeEeccCCcC
Q 046655          159 LVHLDLSDNYLSGYIP--PTLGRLSKLEILNLSSNDL  193 (194)
Q Consensus       159 L~~L~L~~N~l~g~~p--~~~~~l~~L~~L~ls~N~l  193 (194)
                      |+.|++++|+++ .++  ..+..+++|+.|++++|++
T Consensus       117 L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~L~~N~l  152 (198)
T d1m9la_         117 LRVLYMSNNKIT-NWGEIDKLAALDKLEDLLLAGNPL  152 (198)
T ss_dssp             SSEEEESEEECC-CHHHHHHHTTTTTCSEEEECSSHH
T ss_pred             ccccccccchhc-cccccccccCCCccceeecCCCcc
Confidence            999999999998 444  4688999999999999975

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.18  E-value=2.8e-11  Score=95.56  Aligned_cols=82  Identities=22%  Similarity=0.373  Sum_probs=66.6

Q ss_pred             ccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchhhccCcccceeecccCccCCCCccccCCCCC
Q 046655          103 KFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLSDNYLSGYIPPTLGRLSK  182 (194)
Q Consensus       103 ~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~  182 (194)
                      .+..++.+++|++++| .+++. + .+..+++|++|++++|++++ ++ .+.++++|++|++++|++++. ++ +.++++
T Consensus       302 ~~~~~~~l~~L~ls~n-~l~~l-~-~l~~l~~L~~L~L~~n~l~~-l~-~l~~l~~L~~L~l~~N~l~~l-~~-l~~l~~  374 (384)
T d2omza2         302 PISNLKNLTYLTLYFN-NISDI-S-PVSSLTKLQRLFFANNKVSD-VS-SLANLTNINWLSAGHNQISDL-TP-LANLTR  374 (384)
T ss_dssp             GGGGCTTCSEEECCSS-CCSCC-G-GGGGCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECCSSCCCBC-GG-GTTCTT
T ss_pred             ccchhcccCeEECCCC-CCCCC-c-ccccCCCCCEEECCCCCCCC-Ch-hHcCCCCCCEEECCCCcCCCC-hh-hccCCC
Confidence            3566778888999988 77753 3 37888999999999999883 44 688899999999999999964 43 888999


Q ss_pred             CCeEeccCC
Q 046655          183 LEILNLSSN  191 (194)
Q Consensus       183 L~~L~ls~N  191 (194)
                      |+.|++++|
T Consensus       375 L~~L~L~~N  383 (384)
T d2omza2         375 ITQLGLNDQ  383 (384)
T ss_dssp             CSEEECCCE
T ss_pred             CCEeeCCCC
Confidence            999999987

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.16  E-value=7.5e-11  Score=85.78  Aligned_cols=105  Identities=27%  Similarity=0.395  Sum_probs=86.3

Q ss_pred             CCeeeeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchhhccCccc
Q 046655           80 GSVIGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNL  159 (194)
Q Consensus        80 ~~~~~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L  159 (194)
                      ..+++|+.+++++|+++ .++  .+..+++|++|++++| .+.. ++ .+..++.|+.+++++|.+...  ..+..+++|
T Consensus        59 ~~l~nL~~L~Ls~N~l~-~~~--~l~~l~~L~~L~l~~n-~~~~-~~-~l~~l~~L~~L~l~~~~~~~~--~~~~~l~~L  130 (199)
T d2omxa2          59 EYLNNLTQINFSNNQLT-DIT--PLKNLTKLVDILMNNN-QIAD-IT-PLANLTNLTGLTLFNNQITDI--DPLKNLTNL  130 (199)
T ss_dssp             GGCTTCCEEECCSSCCC-CCG--GGTTCTTCCEEECCSS-CCCC-CG-GGTTCTTCSEEECCSSCCCCC--GGGTTCTTC
T ss_pred             ccCCCcCcCcccccccc-Ccc--cccCCccccccccccc-cccc-cc-ccccccccccccccccccccc--cccchhhhh
Confidence            45677888999999998 565  3788999999999999 6653 43 478899999999999988743  347889999


Q ss_pred             ceeecccCccCCCCccccCCCCCCCeEeccCCcCC
Q 046655          160 VHLDLSDNYLSGYIPPTLGRLSKLEILNLSSNDLY  194 (194)
Q Consensus       160 ~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~ls  194 (194)
                      +.+++++|++. .++ .+..+++|+.|++++|+++
T Consensus       131 ~~L~l~~n~l~-~~~-~l~~~~~L~~L~l~~n~l~  163 (199)
T d2omxa2         131 NRLELSSNTIS-DIS-ALSGLTSLQQLNFSSNQVT  163 (199)
T ss_dssp             SEEECCSSCCC-CCG-GGTTCTTCSEEECCSSCCC
T ss_pred             HHhhhhhhhhc-ccc-ccccccccccccccccccc
Confidence            99999999998 444 5888999999999999864

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.13  E-value=1.3e-10  Score=85.26  Aligned_cols=102  Identities=25%  Similarity=0.384  Sum_probs=85.3

Q ss_pred             CCCeeeeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchhhccCcc
Q 046655           79 AGSVIGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRN  158 (194)
Q Consensus        79 ~~~~~~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~  158 (194)
                      ...+++|+.+++++|.+. .++  .+..++.++.+++++| .++.  +..+..+++|+++++++|++++ ++ .+.++++
T Consensus       108 l~~l~~L~~L~l~~~~~~-~~~--~l~~l~~l~~l~~~~n-~l~~--~~~~~~l~~L~~l~l~~n~l~~-i~-~l~~l~~  179 (210)
T d1h6ta2         108 LKDLKKLKSLSLEHNGIS-DIN--GLVHLPQLESLYLGNN-KITD--ITVLSRLTKLDTLSLEDNQISD-IV-PLAGLTK  179 (210)
T ss_dssp             GTTCTTCCEEECTTSCCC-CCG--GGGGCTTCCEEECCSS-CCCC--CGGGGGCTTCSEEECCSSCCCC-CG-GGTTCTT
T ss_pred             cccccccccccccccccc-ccc--cccccccccccccccc-cccc--cccccccccccccccccccccc-cc-cccCCCC
Confidence            445667777888998887 665  5778999999999999 7763  4567889999999999999985 44 3889999


Q ss_pred             cceeecccCccCCCCccccCCCCCCCeEeccC
Q 046655          159 LVHLDLSDNYLSGYIPPTLGRLSKLEILNLSS  190 (194)
Q Consensus       159 L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~  190 (194)
                      |+.|++++|+++ .+| .+.++++|++|++++
T Consensus       180 L~~L~Ls~N~i~-~l~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         180 LQNLYLSKNHIS-DLR-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             CCEEECCSSCCC-BCG-GGTTCTTCSEEEEEE
T ss_pred             CCEEECCCCCCC-CCh-hhcCCCCCCEEEccC
Confidence            999999999999 566 589999999999974

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.05  E-value=3.6e-10  Score=89.04  Aligned_cols=106  Identities=24%  Similarity=0.333  Sum_probs=76.3

Q ss_pred             CeeeeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccC--------------------CccccCCCCCCEeec
Q 046655           81 SVIGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSI--------------------PSEIAAVSMLQTLEL  140 (194)
Q Consensus        81 ~~~~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~--------------------p~~~~~l~~L~~L~L  140 (194)
                      .++.+..+++.+|+++ .++  .+..+++|++|+++++ .+++..                    ...+..+++++.+++
T Consensus       239 ~l~~L~~L~l~~n~l~-~~~--~~~~~~~L~~L~l~~~-~l~~~~~~~~~~~l~~l~~~~n~l~~~~~~~~~~~l~~L~l  314 (384)
T d2omza2         239 SLTNLTDLDLANNQIS-NLA--PLSGLTKLTELKLGAN-QISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTL  314 (384)
T ss_dssp             GCTTCSEEECCSSCCC-CCG--GGTTCTTCSEEECCSS-CCCCCGGGTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEEC
T ss_pred             cccccchhccccCccC-CCC--cccccccCCEeeccCc-ccCCCCccccccccccccccccccccccccchhcccCeEEC
Confidence            3344555666666666 343  2555666666666666 444321                    234667788999999


Q ss_pred             CCCcccccCchhhccCcccceeecccCccCCCCccccCCCCCCCeEeccCCcCC
Q 046655          141 PSSSLTGIIPLEMGRLRNLVHLDLSDNYLSGYIPPTLGRLSKLEILNLSSNDLY  194 (194)
Q Consensus       141 ~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~ls  194 (194)
                      ++|++++. + .+..+++|+.|++++|++++ ++ .+.++++|++|++++|+|+
T Consensus       315 s~n~l~~l-~-~l~~l~~L~~L~L~~n~l~~-l~-~l~~l~~L~~L~l~~N~l~  364 (384)
T d2omza2         315 YFNNISDI-S-PVSSLTKLQRLFFANNKVSD-VS-SLANLTNINWLSAGHNQIS  364 (384)
T ss_dssp             CSSCCSCC-G-GGGGCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECCSSCCC
T ss_pred             CCCCCCCC-c-ccccCCCCCEEECCCCCCCC-Ch-hHcCCCCCCEEECCCCcCC
Confidence            99999854 3 38889999999999999994 55 5899999999999999874

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.04  E-value=5e-10  Score=82.76  Aligned_cols=59  Identities=27%  Similarity=0.460  Sum_probs=30.2

Q ss_pred             CCCCCCEeecCCCcccccCchhhccCcccceeecccCccCCCCccccCCCCCCCeEeccCCcC
Q 046655          131 AVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLSDNYLSGYIPPTLGRLSKLEILNLSSNDL  193 (194)
Q Consensus       131 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l  193 (194)
                      .+++|++|++++|.+.+.  ..++++++|+.|++++|++++ ++. +.++++|++|++++|++
T Consensus       149 ~~~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~Ls~n~l~~-l~~-l~~l~~L~~L~Ls~N~l  207 (227)
T d1h6ua2         149 GLTNLQYLSIGNAQVSDL--TPLANLSKLTTLKADDNKISD-ISP-LASLPNLIEVHLKNNQI  207 (227)
T ss_dssp             GCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCC-CGG-GGGCTTCCEEECTTSCC
T ss_pred             cccccccccccccccccc--hhhcccccceecccCCCccCC-Chh-hcCCCCCCEEECcCCcC
Confidence            344455555555544422  224555556666666665553 332 55555666666665554

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.98  E-value=8e-10  Score=81.63  Aligned_cols=80  Identities=28%  Similarity=0.450  Sum_probs=67.5

Q ss_pred             cCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchhhccCcccceeecccCccCCCCccccCCCCCC
Q 046655          104 FSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLSDNYLSGYIPPTLGRLSKL  183 (194)
Q Consensus       104 ~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L  183 (194)
                      +...+.|++|++++| .+..  ...+..+++|+.|++++|++.+ ++ .+..+++|++|++++|++++ +++ +.++++|
T Consensus       147 ~~~~~~L~~L~l~~n-~~~~--~~~l~~l~~L~~L~Ls~n~l~~-l~-~l~~l~~L~~L~Ls~N~lt~-i~~-l~~l~~L  219 (227)
T d1h6ua2         147 LAGLTNLQYLSIGNA-QVSD--LTPLANLSKLTTLKADDNKISD-IS-PLASLPNLIEVHLKNNQISD-VSP-LANTSNL  219 (227)
T ss_dssp             GGGCTTCCEEECCSS-CCCC--CGGGTTCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECTTSCCCB-CGG-GTTCTTC
T ss_pred             hcccccccccccccc-cccc--chhhcccccceecccCCCccCC-Ch-hhcCCCCCCEEECcCCcCCC-Ccc-cccCCCC
Confidence            566788999999999 7663  2348899999999999999984 44 48899999999999999994 554 8899999


Q ss_pred             CeEeccC
Q 046655          184 EILNLSS  190 (194)
Q Consensus       184 ~~L~ls~  190 (194)
                      +.|++++
T Consensus       220 ~~L~lsn  226 (227)
T d1h6ua2         220 FIVTLTN  226 (227)
T ss_dssp             CEEEEEE
T ss_pred             CEEEeeC
Confidence            9999974

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.98  E-value=4.4e-12  Score=92.63  Aligned_cols=90  Identities=19%  Similarity=0.265  Sum_probs=76.0

Q ss_pred             ccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchhhccCcccceeecccCccCCCCcccc
Q 046655           98 ELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLSDNYLSGYIPPTL  177 (194)
Q Consensus        98 ~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~  177 (194)
                      .++ ..+..+++|++|++++| .++ .++ .+..+++|+.|++++|.++ .+|..+..++.|+.|++++|+++. ++ .+
T Consensus        39 ~l~-~sl~~L~~L~~L~Ls~n-~I~-~i~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~~-l~-~~  111 (198)
T d1m9la_          39 KMD-ATLSTLKACKHLALSTN-NIE-KIS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GI  111 (198)
T ss_dssp             CCH-HHHHHTTTCCEEECSEE-EES-CCC-CHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECCC-HH-HH
T ss_pred             hhh-hHHhcccccceeECccc-CCC-Ccc-cccCCccccChhhcccccc-cccccccccccccccccccccccc-cc-cc
Confidence            444 56778999999999999 777 454 5889999999999999998 677766677899999999999994 44 47


Q ss_pred             CCCCCCCeEeccCCcCC
Q 046655          178 GRLSKLEILNLSSNDLY  194 (194)
Q Consensus       178 ~~l~~L~~L~ls~N~ls  194 (194)
                      ..+++|+.|++++|+|+
T Consensus       112 ~~l~~L~~L~L~~N~i~  128 (198)
T d1m9la_         112 EKLVNLRVLYMSNNKIT  128 (198)
T ss_dssp             HHHHHSSEEEESEEECC
T ss_pred             cccccccccccccchhc
Confidence            88899999999999874

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.97  E-value=5.5e-10  Score=83.01  Aligned_cols=101  Identities=19%  Similarity=0.241  Sum_probs=74.7

Q ss_pred             cccccceeCCC------CC-eeeeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccC-CccccCCCCCCEeec
Q 046655           69 CKWTGVSCNSA------GS-VIGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSI-PSEIAAVSMLQTLEL  140 (194)
Q Consensus        69 c~~~gv~c~~~------~~-~~~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~-p~~~~~l~~L~~L~L  140 (194)
                      |....+.|...      .. .+.++.+++++|+++ .+|...|..+++|++|++++| .+...+ +..|..++.++++.+
T Consensus         8 C~~~~i~c~~~~l~~iP~~l~~~l~~L~Ls~n~i~-~l~~~~f~~l~~L~~L~ls~n-~~~~~i~~~~f~~l~~l~~l~~   85 (242)
T d1xwdc1           8 CSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQN-DVLEVIEADVFSNLPKLHEIRI   85 (242)
T ss_dssp             ECSSEEEEESCSCSSCCSCSCSCCSEEEEESCCCC-EECTTTTTTCTTCCEEEEESC-TTCCEECSSSEESCTTCCEEEE
T ss_pred             CcCCEEEEeCCCCCCcCCCCCCCCCEEECcCCcCC-ccChhHhhccchhhhhhhccc-cccceeeccccccccccccccc
Confidence            45556667521      11 135667888999988 787567888999999999999 655443 446788889999887


Q ss_pred             C-CCcccccCchhhccCcccceeecccCccCC
Q 046655          141 P-SSSLTGIIPLEMGRLRNLVHLDLSDNYLSG  171 (194)
Q Consensus       141 ~-~n~l~~~~p~~~~~l~~L~~L~L~~N~l~g  171 (194)
                      . .|.+....+..|.++++|+.+++++|+++.
T Consensus        86 ~~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~  117 (242)
T d1xwdc1          86 EKANNLLYINPEAFQNLPNLQYLLISNTGIKH  117 (242)
T ss_dssp             ECCTTCCEECTTSEECCTTCCEEEEESCCCCS
T ss_pred             cccccccccccccccccccccccccchhhhcc
Confidence            5 467776667778889999999999998873

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.78  E-value=8.8e-09  Score=76.30  Aligned_cols=69  Identities=14%  Similarity=0.172  Sum_probs=30.8

Q ss_pred             CCCCeeeeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCccc
Q 046655           78 SAGSVIGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLT  146 (194)
Q Consensus        78 ~~~~~~~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~  146 (194)
                      .+.++++|+.+++++|.+...++...|..++.++++.+..+..+....+..|.++++|+.+++++|++.
T Consensus        48 ~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~  116 (242)
T d1xwdc1          48 AFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIK  116 (242)
T ss_dssp             TTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEEEEESCCCC
T ss_pred             Hhhccchhhhhhhccccccceeeccccccccccccccccccccccccccccccccccccccccchhhhc
Confidence            334444444455555544433333334444445554443321333333444444555555555555444

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.77  E-value=1.9e-08  Score=77.68  Aligned_cols=93  Identities=26%  Similarity=0.305  Sum_probs=61.2

Q ss_pred             eeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchhhccCcccceeec
Q 046655           85 VSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDL  164 (194)
Q Consensus        85 l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L  164 (194)
                      +..|+++++.++ .+| +   .+++|++|++++| .++ .+|..   +.+|+.|++++|++. .++. +  .+.|++|++
T Consensus        40 l~~LdLs~~~L~-~lp-~---~~~~L~~L~Ls~N-~l~-~lp~~---~~~L~~L~l~~n~l~-~l~~-l--p~~L~~L~L  105 (353)
T d1jl5a_          40 AHELELNNLGLS-SLP-E---LPPHLESLVASCN-SLT-ELPEL---PQSLKSLLVDNNNLK-ALSD-L--PPLLEYLGV  105 (353)
T ss_dssp             CSEEECTTSCCS-CCC-S---CCTTCSEEECCSS-CCS-SCCCC---CTTCCEEECCSSCCS-CCCS-C--CTTCCEEEC
T ss_pred             CCEEEeCCCCCC-CCC-C---CCCCCCEEECCCC-CCc-ccccc---hhhhhhhhhhhcccc-hhhh-h--ccccccccc
Confidence            445666777777 677 3   2457777888877 666 46654   346777777777776 4432 1  135777888


Q ss_pred             ccCccCCCCccccCCCCCCCeEeccCCcC
Q 046655          165 SDNYLSGYIPPTLGRLSKLEILNLSSNDL  193 (194)
Q Consensus       165 ~~N~l~g~~p~~~~~l~~L~~L~ls~N~l  193 (194)
                      ++|.++ .+|. ++.+++|++|++++|.+
T Consensus       106 ~~n~l~-~lp~-~~~l~~L~~L~l~~~~~  132 (353)
T d1jl5a_         106 SNNQLE-KLPE-LQNSSFLKIIDVDNNSL  132 (353)
T ss_dssp             CSSCCS-SCCC-CTTCTTCCEEECCSSCC
T ss_pred             cccccc-cccc-hhhhccceeeccccccc
Confidence            887777 4564 56777778887777654

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.54  E-value=4.5e-09  Score=83.97  Aligned_cols=109  Identities=20%  Similarity=0.270  Sum_probs=79.7

Q ss_pred             eeeeeeeccCCccccc-cCccccCCCCCccEEEecCCCCCcc----cCCccccCCCCCCEeecCCCccccc----Cchhh
Q 046655           83 IGVSLLWYENDNITGE-LGRFKFSCFPNLKSFKIHSNYLLSG----SIPSEIAAVSMLQTLELPSSSLTGI----IPLEM  153 (194)
Q Consensus        83 ~~l~~l~l~~n~l~~~-lp~~~~~~l~~L~~L~l~~n~~l~~----~~p~~~~~l~~L~~L~L~~n~l~~~----~p~~~  153 (194)
                      ..|+.+++++|++++. +. ..+..++++++|+|++| .++.    .+...+..+++|++|+|++|.++..    +...+
T Consensus         2 ~~l~~ld~~~~~i~~~~~~-~l~~~l~~l~~L~L~~~-~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l   79 (460)
T d1z7xw1           2 LDIQSLDIQCEELSDARWA-ELLPLLQQCQVVRLDDC-GLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGL   79 (460)
T ss_dssp             EEEEEEEEESCCCCHHHHH-HHHHHHTTCSEEEEESS-CCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTT
T ss_pred             CCCCEEEeeCCcCChHHHH-HHHHhCCCCCEEEeCCC-CCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHH
Confidence            3577788899998742 12 23456789999999999 6652    2334467789999999999998632    11222


Q ss_pred             c-cCcccceeecccCccCCC----CccccCCCCCCCeEeccCCcC
Q 046655          154 G-RLRNLVHLDLSDNYLSGY----IPPTLGRLSKLEILNLSSNDL  193 (194)
Q Consensus       154 ~-~l~~L~~L~L~~N~l~g~----~p~~~~~l~~L~~L~ls~N~l  193 (194)
                      . ...+|+.|++++|+++..    ++..+..+++|++|++++|.+
T Consensus        80 ~~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i  124 (460)
T d1z7xw1          80 QTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLL  124 (460)
T ss_dssp             CSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBC
T ss_pred             hcCCCCCCEEECCCCCccccccccccchhhccccccccccccccc
Confidence            2 224799999999999742    456678899999999999976

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.50  E-value=2.4e-08  Score=70.03  Aligned_cols=84  Identities=25%  Similarity=0.207  Sum_probs=63.0

Q ss_pred             ccCCCCCccEEEecCCCCCccc--CCccccCCCCCCEeecCCCcccccCchhhccCcccceeecccCccCCCCcc-----
Q 046655          103 KFSCFPNLKSFKIHSNYLLSGS--IPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHLDLSDNYLSGYIPP-----  175 (194)
Q Consensus       103 ~~~~l~~L~~L~l~~n~~l~~~--~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~g~~p~-----  175 (194)
                      ....++.|++|++++| .++..  ++..+..+++|+.|++++|+++...+-.+.....|+.+++++|.+......     
T Consensus        60 ~~~~~~~L~~L~Ls~N-~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~  138 (162)
T d1koha1          60 IEENIPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYI  138 (162)
T ss_dssp             HHHHCTTCCCCCCCSS-CCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHH
T ss_pred             HHHhCCCCCEeeCCCc-cccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHH
Confidence            3456889999999999 77743  234466789999999999999843332333455799999999999865442     


Q ss_pred             --ccCCCCCCCeEe
Q 046655          176 --TLGRLSKLEILN  187 (194)
Q Consensus       176 --~~~~l~~L~~L~  187 (194)
                        .+..+|+|+.||
T Consensus       139 ~~i~~~~P~L~~LD  152 (162)
T d1koha1         139 SAIRERFPKLLRLD  152 (162)
T ss_dssp             HHHHTTSTTCCEET
T ss_pred             HHHHHHCCCCCEEC
Confidence              266889999887

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.37  E-value=6.8e-09  Score=72.87  Aligned_cols=68  Identities=26%  Similarity=0.179  Sum_probs=53.4

Q ss_pred             CccccCCCCCCEeecCCCccccc--CchhhccCcccceeecccCccCCCCcc-ccCCCCCCCeEeccCCcCC
Q 046655          126 PSEIAAVSMLQTLELPSSSLTGI--IPLEMGRLRNLVHLDLSDNYLSGYIPP-TLGRLSKLEILNLSSNDLY  194 (194)
Q Consensus       126 p~~~~~l~~L~~L~L~~n~l~~~--~p~~~~~l~~L~~L~L~~N~l~g~~p~-~~~~l~~L~~L~ls~N~ls  194 (194)
                      +..+..+++|++|+|++|+++..  ++..+..+++|+.|++++|+++ .+++ .+.+..+|+.+++++|+++
T Consensus        58 ~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~-~l~~l~~l~~~~L~~L~L~~Npl~  128 (162)
T d1koha1          58 RIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELK-SERELDKIKGLKLEELWLDGNSLS  128 (162)
T ss_dssp             HHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCC-CGGGHHHHTTCCCSSCCCTTSTTS
T ss_pred             HHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccc-cchhhhhhhccccceeecCCCCcC
Confidence            33445789999999999999853  2455778999999999999999 4444 3344567999999999874

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.34  E-value=1.1e-07  Score=72.43  Aligned_cols=36  Identities=44%  Similarity=0.480  Sum_probs=21.2

Q ss_pred             cCcccceeecccC-ccCCCCccccCCCCCCCeEeccC
Q 046655          155 RLRNLVHLDLSDN-YLSGYIPPTLGRLSKLEILNLSS  190 (194)
Q Consensus       155 ~l~~L~~L~L~~N-~l~g~~p~~~~~l~~L~~L~ls~  190 (194)
                      .+++|++|+++++ .+++.....+.++++|++|++++
T Consensus       173 ~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~  209 (284)
T d2astb2         173 RCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSR  209 (284)
T ss_dssp             HCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTT
T ss_pred             ccccccccccccccCCCchhhhhhcccCcCCEEECCC
Confidence            4556666666654 35544455556666666666665

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.33  E-value=1.4e-06  Score=66.76  Aligned_cols=99  Identities=23%  Similarity=0.279  Sum_probs=71.5

Q ss_pred             eeeeeeeccCCccccccCccccCCCCCccEEEecCCCCCcccCCccccCCCCCCEeecCCCcccccCchhhccCccccee
Q 046655           83 IGVSLLWYENDNITGELGRFKFSCFPNLKSFKIHSNYLLSGSIPSEIAAVSMLQTLELPSSSLTGIIPLEMGRLRNLVHL  162 (194)
Q Consensus        83 ~~l~~l~l~~n~l~~~lp~~~~~~l~~L~~L~l~~n~~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L  162 (194)
                      .+|+.|++++|+|+ .+| ..   +.+|+.|++++| .++ .++. +  .+.|++|++++|.+. .+|. ++.+++|+.+
T Consensus        58 ~~L~~L~Ls~N~l~-~lp-~~---~~~L~~L~l~~n-~l~-~l~~-l--p~~L~~L~L~~n~l~-~lp~-~~~l~~L~~L  125 (353)
T d1jl5a_          58 PHLESLVASCNSLT-ELP-EL---PQSLKSLLVDNN-NLK-ALSD-L--PPLLEYLGVSNNQLE-KLPE-LQNSSFLKII  125 (353)
T ss_dssp             TTCSEEECCSSCCS-SCC-CC---CTTCCEEECCSS-CCS-CCCS-C--CTTCCEEECCSSCCS-SCCC-CTTCTTCCEE
T ss_pred             CCCCEEECCCCCCc-ccc-cc---hhhhhhhhhhhc-ccc-hhhh-h--ccccccccccccccc-cccc-hhhhccceee
Confidence            45677888999999 888 43   467899999999 766 3443 1  246999999999998 6664 6788999999


Q ss_pred             ecccCccCCCCc------------------cccCCCCCCCeEeccCCcC
Q 046655          163 DLSDNYLSGYIP------------------PTLGRLSKLEILNLSSNDL  193 (194)
Q Consensus       163 ~L~~N~l~g~~p------------------~~~~~l~~L~~L~ls~N~l  193 (194)
                      ++++|.+++..+                  ..+..++.++.+++++|.+
T Consensus       126 ~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~l~~l~~l~~L~l~~n~~  174 (353)
T d1jl5a_         126 DVDNNSLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSL  174 (353)
T ss_dssp             ECCSSCCSCCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCC
T ss_pred             ccccccccccccccccccchhhccccccccccccccccceecccccccc
Confidence            999888773221                  1234456667777776643

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.19  E-value=1.7e-07  Score=72.84  Aligned_cols=109  Identities=17%  Similarity=0.168  Sum_probs=67.9

Q ss_pred             eeeeeeccCCccccc-----cCccccCCCCCccEEEecCCCCCccc----CCccccCCCCCCEeecCCCcccccCchh--
Q 046655           84 GVSLLWYENDNITGE-----LGRFKFSCFPNLKSFKIHSNYLLSGS----IPSEIAAVSMLQTLELPSSSLTGIIPLE--  152 (194)
Q Consensus        84 ~l~~l~l~~n~l~~~-----lp~~~~~~l~~L~~L~l~~n~~l~~~----~p~~~~~l~~L~~L~L~~n~l~~~~p~~--  152 (194)
                      .++.+++++|++...     +. ..+...++|++|++++| .+...    +...+..+++|++|+|++|.+++.-...  
T Consensus       187 ~L~~L~L~~n~i~~~g~~~~l~-~~l~~~~~L~~L~Ls~N-~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~  264 (344)
T d2ca6a1         187 LLHTVKMVQNGIRPEGIEHLLL-EGLAYCQELKVLDLQDN-TFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVV  264 (344)
T ss_dssp             TCCEEECCSSCCCHHHHHHHHH-TTGGGCTTCCEEECCSS-CCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHH
T ss_pred             hhcccccccccccccccccchh-hhhcchhhhcccccccc-cccccccccccccccccccchhhhhhcCccCchhhHHHH
Confidence            345566677776521     22 34556778888888888 55421    2344567778888888888876432222  


Q ss_pred             --hcc--CcccceeecccCccCCC----CccccC-CCCCCCeEeccCCcCC
Q 046655          153 --MGR--LRNLVHLDLSDNYLSGY----IPPTLG-RLSKLEILNLSSNDLY  194 (194)
Q Consensus       153 --~~~--l~~L~~L~L~~N~l~g~----~p~~~~-~l~~L~~L~ls~N~ls  194 (194)
                        +..  .+.|+.|++++|+++..    +...+. +.++|++|++++|.|+
T Consensus       265 ~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~  315 (344)
T d2ca6a1         265 DAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS  315 (344)
T ss_dssp             HHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred             HHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCC
Confidence              222  35688888888887631    222232 5677888888888763

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.08  E-value=4.1e-07  Score=70.61  Aligned_cols=110  Identities=19%  Similarity=0.263  Sum_probs=75.6

Q ss_pred             eeeeeeeccCCcccc----ccCccccCCCCCccEEEecCCCCCccc-----CCccccCCCCCCEeecCCCccccc----C
Q 046655           83 IGVSLLWYENDNITG----ELGRFKFSCFPNLKSFKIHSNYLLSGS-----IPSEIAAVSMLQTLELPSSSLTGI----I  149 (194)
Q Consensus        83 ~~l~~l~l~~n~l~~----~lp~~~~~~l~~L~~L~l~~n~~l~~~-----~p~~~~~l~~L~~L~L~~n~l~~~----~  149 (194)
                      ..+..+.+++|++..    .+. ..+...+.++.+++++| .+...     +...+..+++|+.|++++|.++..    +
T Consensus       158 ~~L~~l~l~~n~i~~~~~~~l~-~~l~~~~~L~~L~L~~n-~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L  235 (344)
T d2ca6a1         158 PPLRSIICGRNRLENGSMKEWA-KTFQSHRLLHTVKMVQN-GIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSAL  235 (344)
T ss_dssp             CCCCEEECCSSCCTGGGHHHHH-HHHHHCTTCCEEECCSS-CCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHH
T ss_pred             cccceeeccccccccccccccc-chhhhhhhhcccccccc-cccccccccchhhhhcchhhhcccccccccccccccccc
Confidence            345556667766642    122 23445678999999999 65421     234466788999999999998643    3


Q ss_pred             chhhccCcccceeecccCccCCC----CccccC--CCCCCCeEeccCCcCC
Q 046655          150 PLEMGRLRNLVHLDLSDNYLSGY----IPPTLG--RLSKLEILNLSSNDLY  194 (194)
Q Consensus       150 p~~~~~l~~L~~L~L~~N~l~g~----~p~~~~--~l~~L~~L~ls~N~ls  194 (194)
                      ...+..++.|++|++++|.+++.    +-..+.  ..+.|++|++++|+|+
T Consensus       236 ~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~  286 (344)
T d2ca6a1         236 AIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIE  286 (344)
T ss_dssp             HHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCB
T ss_pred             cccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCC
Confidence            34567889999999999998843    212222  3467999999999873

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.90  E-value=9.1e-07  Score=70.15  Aligned_cols=38  Identities=29%  Similarity=0.364  Sum_probs=19.3

Q ss_pred             CCCCEeecCCCccccc----CchhhccCcccceeecccCccC
Q 046655          133 SMLQTLELPSSSLTGI----IPLEMGRLRNLVHLDLSDNYLS  170 (194)
Q Consensus       133 ~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~L~~N~l~  170 (194)
                      +.|++|+|++|.+++.    ++..+..+++|++|++++|+++
T Consensus       369 ~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~  410 (460)
T d1z7xw1         369 SVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG  410 (460)
T ss_dssp             CCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCC
T ss_pred             CCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCC
Confidence            3455555555555432    2233444455555555555554

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.87  E-value=7.4e-06  Score=61.88  Aligned_cols=85  Identities=20%  Similarity=0.178  Sum_probs=58.0

Q ss_pred             CCCccEEEecCCC-CCcc-cCCccccCCCCCCEeecCCC-cccccCchhhccCcccceeeccc-CccCCCCccccCCCCC
Q 046655          107 FPNLKSFKIHSNY-LLSG-SIPSEIAAVSMLQTLELPSS-SLTGIIPLEMGRLRNLVHLDLSD-NYLSGYIPPTLGRLSK  182 (194)
Q Consensus       107 l~~L~~L~l~~n~-~l~~-~~p~~~~~l~~L~~L~L~~n-~l~~~~p~~~~~l~~L~~L~L~~-N~l~g~~p~~~~~l~~  182 (194)
                      .+.|+.|+++++. .++. .+......+++|++|+++++ .+++.....+..+++|++|++++ +.++..-...+.++++
T Consensus       147 ~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~  226 (284)
T d2astb2         147 SETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPT  226 (284)
T ss_dssp             CTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTT
T ss_pred             ccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCC
Confidence            4678888887651 1221 12223346788888888875 46666667778888888888888 4676555556777888


Q ss_pred             CCeEeccCC
Q 046655          183 LEILNLSSN  191 (194)
Q Consensus       183 L~~L~ls~N  191 (194)
                      |+.|+++++
T Consensus       227 L~~L~l~~~  235 (284)
T d2astb2         227 LKTLQVFGI  235 (284)
T ss_dssp             CCEEECTTS
T ss_pred             CCEEeeeCC
Confidence            888888765

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.61  E-value=1.9e-05  Score=54.98  Aligned_cols=107  Identities=15%  Similarity=0.094  Sum_probs=65.8

Q ss_pred             eeeeeeeccCC-ccccc----cCccccCCCCCccEEEecCCCCCccc----CCccccCCCCCCEeecCCCccccc----C
Q 046655           83 IGVSLLWYEND-NITGE----LGRFKFSCFPNLKSFKIHSNYLLSGS----IPSEIAAVSMLQTLELPSSSLTGI----I  149 (194)
Q Consensus        83 ~~l~~l~l~~n-~l~~~----lp~~~~~~l~~L~~L~l~~n~~l~~~----~p~~~~~l~~L~~L~L~~n~l~~~----~  149 (194)
                      ..|+.++++++ .+...    +- ..+...+.|++|++++| .+...    +...+...+.|+.|+|++|.+++.    +
T Consensus        15 ~~L~~L~L~~~~~i~~~~~~~l~-~~L~~n~~L~~L~Ls~n-~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l   92 (167)
T d1pgva_          15 TDLKEVNINNMKRVSKERIRSLI-EAACNSKHIEKFSLANT-AISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL   92 (167)
T ss_dssp             SSCCEEECTTCCSSCHHHHHHHH-HHHTTCSCCCEEECTTS-CCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred             CCCcEEEeCCCCCCCHHHHHHHH-HHHhhCCccceeecccc-ccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHH
Confidence            34555666653 34321    22 24556677888999888 65522    122334567888999998888743    1


Q ss_pred             chhhccCcccceeecccCccCCC-------CccccCCCCCCCeEeccCC
Q 046655          150 PLEMGRLRNLVHLDLSDNYLSGY-------IPPTLGRLSKLEILNLSSN  191 (194)
Q Consensus       150 p~~~~~l~~L~~L~L~~N~l~g~-------~p~~~~~l~~L~~L~ls~N  191 (194)
                      -..+...++|+.|++++|++...       +...+...++|+.|+++.+
T Consensus        93 ~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~  141 (167)
T d1pgva_          93 LRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA  141 (167)
T ss_dssp             HHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred             HHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCC
Confidence            22355567788888888866521       2333455678888888765

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.44  E-value=2e-05  Score=54.86  Aligned_cols=87  Identities=10%  Similarity=0.106  Sum_probs=51.6

Q ss_pred             CCCCccEEEecCCCCCccc----CCccccCCCCCCEeecCCCccccc----CchhhccCcccceeecccCccCCC----C
Q 046655          106 CFPNLKSFKIHSNYLLSGS----IPSEIAAVSMLQTLELPSSSLTGI----IPLEMGRLRNLVHLDLSDNYLSGY----I  173 (194)
Q Consensus       106 ~l~~L~~L~l~~n~~l~~~----~p~~~~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~L~~N~l~g~----~  173 (194)
                      +.+.|++|+++++..+...    +-..+...+.|++|+|++|.+...    +...+...+.|+.|++++|.++..    +
T Consensus        13 n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l   92 (167)
T d1pgva_          13 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL   92 (167)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred             CCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHH
Confidence            3467778888764133211    122344556778888888777632    122344556778888888777731    2


Q ss_pred             ccccCCCCCCCeEeccCCc
Q 046655          174 PPTLGRLSKLEILNLSSND  192 (194)
Q Consensus       174 p~~~~~l~~L~~L~ls~N~  192 (194)
                      -..+...++|++|++++|.
T Consensus        93 ~~aL~~n~sL~~L~l~~n~  111 (167)
T d1pgva_          93 LRSTLVTQSIVEFKADNQR  111 (167)
T ss_dssp             HHHTTTTCCCSEEECCCCS
T ss_pred             HHHHHhCCcCCEEECCCCc
Confidence            2335566778888887764

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.17  E-value=0.0011  Score=45.35  Aligned_cols=89  Identities=15%  Similarity=0.199  Sum_probs=58.3

Q ss_pred             ccCCCCCccEEEecCCCCCccc----CCccccCCCCCCEeecCCCccccc----CchhhccCcccceeec--ccCccCC-
Q 046655          103 KFSCFPNLKSFKIHSNYLLSGS----IPSEIAAVSMLQTLELPSSSLTGI----IPLEMGRLRNLVHLDL--SDNYLSG-  171 (194)
Q Consensus       103 ~~~~l~~L~~L~l~~n~~l~~~----~p~~~~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~L--~~N~l~g-  171 (194)
                      .+...++|++|++++| .+...    +-..+...+.++.+++++|.+...    +-..+...+.|+.++|  ++|.+.. 
T Consensus        41 al~~n~~L~~L~Ls~n-~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~  119 (166)
T d1io0a_          41 ALKTNTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNN  119 (166)
T ss_dssp             HHTTCCSCCEEECTTS-CCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHH
T ss_pred             HHhcCCccCeeeccCC-cccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHHHHHHhCccccEEeeccCCCcCcHH
Confidence            4456788999999988 65432    122344567899999988888643    2234556677876444  5666652 


Q ss_pred             ---CCccccCCCCCCCeEeccCCc
Q 046655          172 ---YIPPTLGRLSKLEILNLSSND  192 (194)
Q Consensus       172 ---~~p~~~~~l~~L~~L~ls~N~  192 (194)
                         .+...+...++|+.|+++.+.
T Consensus       120 ~~~~La~~L~~n~~L~~L~l~~~~  143 (166)
T d1io0a_         120 VEMEIANMLEKNTTLLKFGYHFTQ  143 (166)
T ss_dssp             HHHHHHHHHHHCSSCCEEECCCSS
T ss_pred             HHHHHHHHHHhCCCcCEEeCcCCC
Confidence               233445677889999887764

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=95.82  E-value=0.001  Score=45.47  Aligned_cols=83  Identities=12%  Similarity=0.196  Sum_probs=43.1

Q ss_pred             CCCCccEEEecCCCCCccc----CCccccCCCCCCEeecCCCcccccC----chhhccCcccceeecccCccCCC----C
Q 046655          106 CFPNLKSFKIHSNYLLSGS----IPSEIAAVSMLQTLELPSSSLTGII----PLEMGRLRNLVHLDLSDNYLSGY----I  173 (194)
Q Consensus       106 ~l~~L~~L~l~~n~~l~~~----~p~~~~~l~~L~~L~L~~n~l~~~~----p~~~~~l~~L~~L~L~~N~l~g~----~  173 (194)
                      +.+.|++|+++++..++..    +-..+...++|++|++++|.+....    -..+...+.++.+++++|.+...    +
T Consensus        15 ~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l   94 (166)
T d1io0a_          15 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILAL   94 (166)
T ss_dssp             TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHH
T ss_pred             cCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHH
Confidence            4456777777653233211    1122335566777777777665321    12234456677777776666521    2


Q ss_pred             ccccCCCCCCCeEec
Q 046655          174 PPTLGRLSKLEILNL  188 (194)
Q Consensus       174 p~~~~~l~~L~~L~l  188 (194)
                      -..+...++|+.++|
T Consensus        95 ~~~l~~~~~L~~l~L  109 (166)
T d1io0a_          95 VEALQSNTSLIELRI  109 (166)
T ss_dssp             HHGGGGCSSCCEEEC
T ss_pred             HHHHHhCccccEEee
Confidence            233455566665444